Citrus Sinensis ID: 015243

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410
Protein Sequence
MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRCGSISL
Secondary Structure (PSIPRED)
cccHHHHHHHHcccEEEEcccHHHHHHHHHHHHcccccEEEEEcccccccccccccccccccccccHHHHHHHHHHHHccccEEEEEccccccccccHHHHHcccEEEEccccHHHHHHHHHHHHHccccEEEccccccccEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHccccccccccccccccccccccccHHHHccccccccccccccHHHHHHcccccccccccHHHcHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHccEEEEcccHHHHHHHHHHHHHcccEEEEEccccEEHccccccEEEcHHHccccHHHHHHHHHHHHccccEEEEEccccccccccHHHHHHccEEEEccccHHHHHHHHHHHHHccccEEEEcccccccEEEEEEccccEEcccccccccccccEEEEccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHccccHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccEEccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccEEcc
Coil and Loop (DISEMBL)
MVSERQLEAIKGAKVLMVGAGGIGCELLKTLAlsgfqdihiidmdtievsnLNRQflfrqshvgqskaKVARDAVlkfrpqmsitahhanvkdpkfnVEFFKQFNVVLNGLDNLDARRHVNRLCLaadvplvesgttgflGQVTVHVkgktecyecqpkpapktypvctitstpskfvHCIVWAKDLLFAKLfgdknqendlnvrssdasssahaedvfvrrkdedidqygRRIYDHVFGYNIEVASsneetwknrnrpkpiysadvmpenlteqngnvakncVVDTSSVSAMASlglknpqdtwTLLESSRIFLEALKLFFAKREKEignlsfdkddQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKdtdkyrcgsisl
Flexible Loop (DISEMBL)
MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFrqshvgqskakVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAAdvplvesgttgfLGQVTVHVKGKTEcyecqpkpapktyPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENdlnvrssdasssahaedvfvrrkdedidqYGRRIYDHVFGYNIEVAssneetwknrnrPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGnlsfdkddQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLlkdtdkyrcgsisl
Low Complexity Region (SEG)
MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRssdasssahaEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRCGSISL
Disordered region (IsUnstruct)
********AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFG************************FVRRKDEDIDQYGRRIYDHVFGYNIEVA********************************VAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRC*****
Disordered Region (DISOPRED)
MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECY*****P*PKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDL*V**SD*SSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCV*********************TLLESSRIFLEALKLFFAK*EKEI*NLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRCGSISL
Disordered Region (DISEMBL)
MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSH********ARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQEND*************AEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRCGSISL
Disordered Region (DISPRO)
MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQ*NDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRCGSISL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRCGSISL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	410	2.2.26 [Sep-21-2011]
Q9SJT1	700	SUMO-activating enzyme su	no	no	0.982	0.575	0.820	0.0
Q9Z1F9	638	SUMO-activating enzyme su	yes	no	0.926	0.595	0.452	3e-96
Q9UBT2	640	SUMO-activating enzyme su	yes	no	0.941	0.603	0.45	3e-96
O42939	628	Ubiquitin-activating enzy	yes	no	0.907	0.592	0.451	5e-96
Q28GH3	641	SUMO-activating enzyme su	yes	no	0.929	0.594	0.447	1e-94
Q7ZY60	641	SUMO-activating enzyme su	N/A	no	0.929	0.594	0.447	1e-94
Q642Q1	641	SUMO-activating enzyme su	N/A	no	0.929	0.594	0.444	3e-94
Q7SXG4	650	SUMO-activating enzyme su	yes	no	0.929	0.586	0.431	6e-93
Q54L40	661	SUMO-activating enzyme su	yes	no	0.914	0.567	0.435	2e-90
Q9NAN1	582	SUMO-activating enzyme su	yes	no	0.890	0.627	0.412	2e-85

>sp|Q9SJT1|SAE2_ARATH SUMO-activating enzyme subunit 2 OS=Arabidopsis thaliana GN=SAE2 PE=1 SV=1

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/407 (82%), Positives = 372/407 (91%), Gaps = 4/407 (0%)

Query: 1   MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
           M +++Q  AIKGAKVLMVGAGGIGCELLKTLALSGF+DIHIIDMDTIEVSNLNRQFLFR+
Sbjct: 1   MATQQQQSAIKGAKVLMVGAGGIGCELLKTLALSGFEDIHIIDMDTIEVSNLNRQFLFRR 60

Query: 61  SHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHV 120
           SHVGQSKAKVARDAVL+FRP ++I ++HANVK+P+F+V+FFKQF+VVLNGLDNLDARRHV
Sbjct: 61  SHVGQSKAKVARDAVLRFRPNINIRSYHANVKNPEFDVDFFKQFDVVLNGLDNLDARRHV 120

Query: 121 NRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHC 180
           NRLCLAADVPLVESGTTGFLGQVTVH+KGKTECYECQ KPAPKTYPVCTITSTP+KFVHC
Sbjct: 121 NRLCLAADVPLVESGTTGFLGQVTVHIKGKTECYECQTKPAPKTYPVCTITSTPTKFVHC 180

Query: 181 IVWAKDLLFAKLFGDKNQENDLNVRSSD-ASSSAHAEDVFVRRKDEDIDQYGRRIYDHVF 239
           IVWAKDLLFAKLFGDKNQ+NDLNVRS++ ASSS   EDVF R +DEDI+QYGR+IYDHVF
Sbjct: 181 IVWAKDLLFAKLFGDKNQDNDLNVRSNNSASSSKETEDVFERSEDEDIEQYGRKIYDHVF 240

Query: 240 GYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSS--VSAMASLG 297
           G NIE A SNEETWKNR RP+PIYS DV+PE+LT+QNG+  +NC V      VSAM SLG
Sbjct: 241 GSNIEAALSNEETWKNRRRPRPIYSKDVLPESLTQQNGS-TQNCSVTDGDLMVSAMPSLG 299

Query: 298 LKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFG 357
           LKNPQ+ W L ++S +F+EALKLFFAKR+KEIG+L+FDKDDQLAVEFVTAAANIRA SFG
Sbjct: 300 LKNPQELWGLTQNSLVFIEALKLFFAKRKKEIGHLTFDKDDQLAVEFVTAAANIRAESFG 359

Query: 358 ISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYR 404
           I LHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVL KD DK+R
Sbjct: 360 IPLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLKKDVDKFR 406

The dimeric enzyme acts as a E1 ligase for SUMO1 and SUMO2. It mediates ATP-dependent activation of SUMO proteins and formation of a thioester with a conserved cysteine residue on SAE2.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9Z1F9|SAE2_MOUSE SUMO-activating enzyme subunit 2 OS=Mus musculus GN=Uba2 PE=2 SV=1

 Score =  352 bits (903), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 192/424 (45%), Positives = 273/424 (64%), Gaps = 44/424 (10%)

Query: 5   RQL-EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV 63
           R+L EA+ G +VL+VGAGGIGCELLK L L+GF  I +ID+DTI+VSNLNRQFLF++ HV
Sbjct: 9   RELAEAVSGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHV 68

Query: 64  GQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL 123
           G+SKA+VA+++VL+F PQ +I AHH ++ +P +NVEFF+QF +V+N LDN  AR HVNR+
Sbjct: 69  GRSKAQVAKESVLQFHPQANIEAHHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRM 128

Query: 124 CLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVW 183
           CLAADVPL+ESGT G+LGQVT   KG TECYEC PKP  +T+P CTI +TPS+ +HCIVW
Sbjct: 129 CLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGCTIRNTPSEPIHCIVW 188

Query: 184 AKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRI--------- 234
           AK  LF +LFG+++ + +++   +D  ++    +   R +  + D   +RI         
Sbjct: 189 AK-YLFNQLFGEEDADQEVSPDRADPEAAWEPTEAEARARASNEDGDIKRISTKEWAKST 247

Query: 235 -YDHV------FGYNIEVASSNEETWKNRNRPKPIYSADVMPE---NLTEQNGNVAKNCV 284
            YD V      F  +I    + ++ W+ R  P P+  A+V  +   N  +QN        
Sbjct: 248 GYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQGEANADQQN-------- 299

Query: 285 VDTSSVSAMASLGLKNPQ----DTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQL 340
                      LGLK+ Q     ++  L S  I  E L++  A++  +   L +DKDD  
Sbjct: 300 --------EPQLGLKDQQVLDVKSYASLFSKSI--ETLRVHLAEK-GDGAELIWDKDDPP 348

Query: 341 AVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDT 400
           A++FVT+AAN+R   F +++ S F+ K +AGNI+ A+ATTNA+IAGLIV+E +K+L    
Sbjct: 349 AMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKI 408

Query: 401 DKYR 404
           D+ R
Sbjct: 409 DQCR 412

The heterodimer acts as a E1 ligase for SUMO1, SUMO2, SUMO3, and probably SUMO4. It mediates ATP-dependent activation of SUMO proteins followed by formation of a thioester bond between a SUMO protein and a conserved active site cysteine residue on UBA2/SAE2.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9UBT2|SAE2_HUMAN SUMO-activating enzyme subunit 2 OS=Homo sapiens GN=UBA2 PE=1 SV=2

 Score =  352 bits (903), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 189/420 (45%), Positives = 275/420 (65%), Gaps = 34/420 (8%)

Query: 5   RQL-EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV 63
           R+L EA+ G +VL+VGAGGIGCELLK L L+GF  I +ID+DTI+VSNLNRQFLF++ HV
Sbjct: 9   RELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHV 68

Query: 64  GQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL 123
           G+SKA+VA+++VL+F P+ +I A+H ++ +P +NVEFF+QF +V+N LDN  AR HVNR+
Sbjct: 69  GRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRM 128

Query: 124 CLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVW 183
           CLAADVPL+ESGT G+LGQVT   KG TECYEC PKP  +T+P CTI +TPS+ +HCIVW
Sbjct: 129 CLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGCTIRNTPSEPIHCIVW 188

Query: 184 AKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRI--------- 234
           AK  LF +LFG+++ + +++   +D  ++    +   R +  + D   +RI         
Sbjct: 189 AK-YLFNQLFGEEDADQEVSPDRADPEAAWEPTEAEARARASNEDGDIKRISTKEWAKST 247

Query: 235 -YDHV------FGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDT 287
            YD V      F  +I    + ++ W+ R  P P+  A+V  +   E N +  +N     
Sbjct: 248 GYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQG-EETNASDQQN----- 301

Query: 288 SSVSAMASLGLKNPQDTWTLLESSRIF---LEALKLFFAKREKEIGNLSFDKDDQLAVEF 344
                   LGLK+ Q    +   +R+F   +E L++  A++  +   L +DKDD  A++F
Sbjct: 302 -----EPQLGLKD-QQVLDVKSYARLFSKSIETLRVHLAEK-GDGAELIWDKDDPSAMDF 354

Query: 345 VTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYR 404
           VT+AAN+R   F +++ S F+ K +AGNI+ A+ATTNA+IAGLIV+E +K+L    D+ R
Sbjct: 355 VTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCR 414

The heterodimer acts as a E1 ligase for SUMO1, SUMO2, SUMO3, and probably SUMO4. It mediates ATP-dependent activation of SUMO proteins followed by formation of a thioester bond between a SUMO protein and a conserved active site cysteine residue on UBA2/SAE2.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O42939|UBA2_SCHPO Ubiquitin-activating enzyme E1-like OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=uba2 PE=1 SV=1

 Score =  351 bits (901), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 182/403 (45%), Positives = 255/403 (63%), Gaps = 31/403 (7%)

Query: 7   LEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQS 66
           L   K AKVL+VGAGGIGCELLK L +SG +++HIID+DTI++SNLNRQFLFR+ HV Q 
Sbjct: 20  LRNFKSAKVLLVGAGGIGCELLKNLLMSGVKEVHIIDLDTIDLSNLNRQFLFRKKHVKQP 79

Query: 67  KAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA 126
           KA VA      F P + + A+HAN+K+ +FNV +F+QF++V N LDNLDARRHVN+ CL 
Sbjct: 80  KAIVAAKTASSFNPNVKLEAYHANIKEDRFNVAWFRQFDLVFNALDNLDARRHVNKQCLL 139

Query: 127 ADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKD 186
           A VPL+ESGTTGFLGQV V + GKTECY+C PK  PKTYPVCTI STPS+ +HC+VWAK 
Sbjct: 140 ASVPLIESGTTGFLGQVQVIIHGKTECYDCNPKEPPKTYPVCTIRSTPSQPIHCVVWAKS 199

Query: 187 LLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYG----------RRIYD 236
             F +LF + +QE+D  + +  A+     E   + R+  ++++             +I+ 
Sbjct: 200 YFFPQLFSN-DQESDGIIDNVSANEMERREIAELARETTELNELRSSIGQSDNGFEKIFT 258

Query: 237 HVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASL 296
            +F  +I       + W  R+ PK +  ++++ EN                   +  A+ 
Sbjct: 259 KMFTKDIVRLREVPDAWTYRSPPKELSYSELL-EN-------------------AEKATS 298

Query: 297 GLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASF 356
              N Q+ W + ES  +  ++++    + +    +LSFDKDD+  ++FV AAAN+RA  F
Sbjct: 299 PWLNEQNVWNVAESFAVLRDSIRRLALRSKSSKDDLSFDKDDKDTLDFVAAAANLRAHVF 358

Query: 357 GISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKD 399
           GI   S F+ K +AGNI+ A+ATTNA+IAGL + +AIKVL  D
Sbjct: 359 GIQQLSEFDIKQMAGNIIPAIATTNAVIAGLCITQAIKVLQGD 401

The dimeric enzyme acts as a SUMO/pmt3 E1 ligase. It mediates ATP-dependent activation of pmt3 and formation of a thioester with a conserved cysteine residue on aos1.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q28GH3|SAE2_XENTR SUMO-activating enzyme subunit 2 OS=Xenopus tropicalis GN=uba2 PE=2 SV=1

 Score =  347 bits (889), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 186/416 (44%), Positives = 281/416 (67%), Gaps = 35/416 (8%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           EA+  +++L+VGAGGIGCELLK L L+GF ++ +ID+DTI+VSNLNRQFLF++ HVG+SK
Sbjct: 13  EAVSTSRLLVVGAGGIGCELLKNLVLTGFINLDVIDLDTIDVSNLNRQFLFQKKHVGRSK 72

Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127
           A+VA+++VL+F P+ +ITA+H ++ +P +NVEFFKQF +V+N LDN  AR HVNR+CLAA
Sbjct: 73  AQVAKESVLQFCPEANITAYHDSIMNPDYNVEFFKQFTMVMNALDNNAARNHVNRMCLAA 132

Query: 128 DVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDL 187
            +PL+ESGT G+LGQVTV  KG TECYECQPKP  KT+P CTI +TPS+ +HCIVWAK  
Sbjct: 133 GIPLIESGTAGYLGQVTVVKKGVTECYECQPKPTQKTFPGCTIRNTPSEPIHCIVWAK-Y 191

Query: 188 LFAKLFGDKNQENDLNVRSSD---------ASSSAHAEDVFVRRKDEDIDQYGR------ 232
           LF +LFG+++ + ++    +D         A+  A+A +V    K     Q+ +      
Sbjct: 192 LFNQLFGEEDADQEVAPDIADPEAAWDPTQAAERANASNVDGDIKRVSTKQWAKSTGYDP 251

Query: 233 -RIYDHVFGYNIEVASSNEETWKNRNRPKPI-YSADVMPENLTEQNGNVAKNCVVDTSSV 290
            ++++ +F  +I+   + +  W+ R  P P+ +S+    EN +E            T + 
Sbjct: 252 IKLFNKLFRDDIKYLLTMDRLWRKRKPPVPLEWSSLHNKENCSE------------TQNE 299

Query: 291 SAMASLGLKNPQDTWTLLESSRIFLEALKLFFAK-REKEIG-NLSFDKDDQLAVEFVTAA 348
           S++   GLK+ Q    +   +++F ++++    + REK  G  L +DKDD  A++FVTAA
Sbjct: 300 SSLQ--GLKD-QKVLDVTSCAQLFSKSVETLREQLREKGNGAELVWDKDDPPAMDFVTAA 356

Query: 349 ANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYR 404
           AN+R   F +++ S F+ K +AGNI+ A+ATTNA+I+GLIV+E +K+L  +T++ R
Sbjct: 357 ANLRMHIFSMNMKSRFDVKSMAGNIIPAIATTNAVISGLIVLEGLKILSGNTEQCR 412

The heterodimer acts as a E1 ligase for sumo1, sumo2, and sumo3. It mediates ATP-dependent activation of sumo proteins followed by formation of a thioester bond between a sumo protein and a conserved active site cysteine residue on uba2/sae2.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7ZY60|SAE2B_XENLA SUMO-activating enzyme subunit 2-B OS=Xenopus laevis GN=uba2-b PE=2 SV=2

 Score =  347 bits (889), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 186/416 (44%), Positives = 279/416 (67%), Gaps = 35/416 (8%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           EA+  +++L+VGAGGIGCELLK L L+GF ++ +ID+DTI+VSNLNRQFLF++ HVG+SK
Sbjct: 13  EAVSASRLLVVGAGGIGCELLKNLVLTGFTNLDVIDLDTIDVSNLNRQFLFQKKHVGRSK 72

Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127
           A+VA+++VL+F P  SITA+H ++ +P +NVEFFKQF + +N LDN  AR HVNR+CLAA
Sbjct: 73  AQVAKESVLQFCPDASITAYHDSIMNPDYNVEFFKQFTMAMNALDNNAARNHVNRMCLAA 132

Query: 128 DVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDL 187
            +PL+ESGT G+LGQV+V  KG TECYECQPKP  KT+P CTI +TPS+ +HCIVWAK  
Sbjct: 133 GIPLIESGTAGYLGQVSVIKKGVTECYECQPKPTQKTFPGCTIRNTPSEPIHCIVWAK-Y 191

Query: 188 LFAKLFGDKNQENDLNVRSSD---------ASSSAHAEDVFVRRKDEDIDQYGR------ 232
           LF +LFG+++ + ++    +D         A+  A+A +V    K     Q+ +      
Sbjct: 192 LFNQLFGEEDADQEVAPDIADPEAAWDPTKAAERANASNVDGDIKRVSTKQWAKSTGYDP 251

Query: 233 -RIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVM-PENLTEQNGNVAKNCVVDTSSV 290
            ++++ +F  +I+   + +  W+ R  P P+  A +   EN +E         + + SS+
Sbjct: 252 IKLFNKLFRDDIKYLLTMDRLWRKRKPPIPLEWASLHNKENCSE---------IQNESSL 302

Query: 291 SAMASLGLKNPQDTWTLLESSRIFLEALKLFFAK-REKEIG-NLSFDKDDQLAVEFVTAA 348
                LGLK+ Q    +   +++F ++++    + REK  G  L +DKDD  A++FVTAA
Sbjct: 303 -----LGLKD-QKVLNVASYAQLFSKSVETLREQLREKGDGAELVWDKDDVPAMDFVTAA 356

Query: 349 ANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYR 404
           AN+R   F +++ S F+ K +AGNI+ A+ATTNA+I+GLIV+E +K+L  +T++ R
Sbjct: 357 ANLRMHIFSMNMKSKFDVKSMAGNIIPAIATTNAVISGLIVLEGLKILSGNTEQCR 412

The heterodimer acts as a E1 ligase for sumo1, sumo2, and sumo3. It mediates ATP-dependent activation of sumo proteins followed by formation of a thioester bond between a sumo protein and a conserved active site cysteine residue on uba2/sae2.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q642Q1|SAE2A_XENLA SUMO-activating enzyme subunit 2-A OS=Xenopus laevis GN=uba2-a PE=2 SV=1

 Score =  345 bits (885), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 185/416 (44%), Positives = 279/416 (67%), Gaps = 35/416 (8%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           EA+  +++L+VGAGGIGCELLK L L+GF ++ +ID+DTI+VSNLNRQFLF++ HVG+SK
Sbjct: 13  EAVSASRLLVVGAGGIGCELLKNLVLTGFTNLDVIDLDTIDVSNLNRQFLFQKKHVGRSK 72

Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127
           A+VA+++VL+F P  +ITA+H ++ +P +NVEFFKQF + +N LDN  AR HVNR+CLAA
Sbjct: 73  AQVAKESVLQFCPDANITAYHDSIMNPDYNVEFFKQFTMAMNALDNNAARNHVNRMCLAA 132

Query: 128 DVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDL 187
            +PL+ESGT G+LGQV+V  KG TECYECQPKP  KT+P CTI +TPS+ +HCIVWAK  
Sbjct: 133 GIPLIESGTAGYLGQVSVIKKGVTECYECQPKPTQKTFPGCTIRNTPSEPIHCIVWAK-Y 191

Query: 188 LFAKLFGDKNQENDLNVRSSD---------ASSSAHAEDVFVRRKDEDIDQYGR------ 232
           LF +LFG+++ + ++    +D         A+  A+A +V    K     Q+ +      
Sbjct: 192 LFNQLFGEEDADQEVAPDIADPEAAWDPTKAAERANASNVDGDIKRVSTKQWAKSTGYDP 251

Query: 233 -RIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVM-PENLTEQNGNVAKNCVVDTSSV 290
            ++++ +F  +I+   + +  W+ R  P P+  A +   EN +E         + + SS+
Sbjct: 252 IKLFNKLFRDDIKYLLTMDRLWRKRKPPIPLEWASLHNKENCSE---------IQNESSL 302

Query: 291 SAMASLGLKNPQDTWTLLESSRIFLEALKLFFAK-REKEIG-NLSFDKDDQLAVEFVTAA 348
                LGLK+ Q    +   +++F ++++    + REK  G  L +DKDD  A++FVTAA
Sbjct: 303 -----LGLKD-QKVLNVASYAQLFSKSVETLREQLREKGDGAELVWDKDDVPAMDFVTAA 356

Query: 349 ANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYR 404
           AN+R   F +++ S F+ K +AGNI+ A+ATTNA+I+GLIV+E +K+L  +T++ R
Sbjct: 357 ANLRMHIFSMNMKSKFDVKSMAGNIIPAIATTNAVISGLIVLEGLKILSGNTEQCR 412

The heterodimer acts as a E1 ligase for sumo1, sumo2, and sumo3. It mediates ATP-dependent activation of sumo proteins followed by formation of a thioester bond between a sumo protein and a conserved active site cysteine residue on uba2/sae2.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7SXG4|SAE2_DANRE SUMO-activating enzyme subunit 2 OS=Danio rerio GN=uba2 PE=1 SV=2

 Score =  341 bits (875), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 185/429 (43%), Positives = 277/429 (64%), Gaps = 48/429 (11%)

Query: 5   RQL-EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV 63
           +QL +++   +VL+VGAGGIGCELLK L L+GF++I +ID+DTI+VSNLNRQFLF++ HV
Sbjct: 10  KQLADSLSSCRVLVVGAGGIGCELLKNLVLTGFKNIEVIDLDTIDVSNLNRQFLFQKKHV 69

Query: 64  GQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL 123
           G+SKA+VA+++VL+F P  +ITA+H ++ +P +NVEFF+ F +V+N LDN  AR HVNR+
Sbjct: 70  GKSKAQVAKESVLRFCPSANITAYHDSIMNPDYNVEFFRNFQLVMNALDNRAARNHVNRM 129

Query: 124 CLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVW 183
           CLAAD+PL+ESGT G+LGQVTV  KG+TECYECQPKP  KT+P CTI +TPS+ +HCIVW
Sbjct: 130 CLAADIPLIESGTAGYLGQVTVIKKGQTECYECQPKPTQKTFPGCTIRNTPSEPIHCIVW 189

Query: 184 AKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRI--------- 234
           AK  LF +LFG+++ + +++  ++D  ++ +  D   R    D D   +R+         
Sbjct: 190 AK-YLFNQLFGEEDADQEVSPDTADPEAAWNPADAAARATASDQDGDIKRVSTKEWARST 248

Query: 235 -YD----------------HVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNG 277
            YD                ++F  +I    + ++ WK R  P P+   ++      EQ  
Sbjct: 249 GYDPIKLFNKVSALSQTSPYLFKDDIMYLLTMDKLWKKRKAPLPLEWEEINQLGSQEQ-- 306

Query: 278 NVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAK-REKEIG-NLSFD 335
                          +   GLK+ Q    +   +++F  +++   ++ +EK  G  L +D
Sbjct: 307 ---------------VIGSGLKD-QQVLGVQGYAQLFQHSVETLRSQLKEKGDGAELVWD 350

Query: 336 KDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKV 395
           KDD  A++FVTAA+N+R   F +++ S F+ K +AGNI+ A+ATTNA+IAGLIV+EA+K+
Sbjct: 351 KDDPPAMDFVTAASNLRMNVFSMNMKSRFDVKSMAGNIIPAIATTNAVIAGLIVLEALKI 410

Query: 396 LLKDTDKYR 404
           L  D ++ R
Sbjct: 411 LNSDFEQCR 419

The heterodimer acts as a E1 ligase for sumo1, sumo2, and sumo3. It mediates ATP-dependent activation of sumo proteins followed by formation of a thioester bond between a sumo protein and a conserved active site cysteine residue on uba2/sae2.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q54L40|SAE2_DICDI SUMO-activating enzyme subunit 2 OS=Dictyostelium discoideum GN=uba2 PE=3 SV=1

 Score =  332 bits (852), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 179/411 (43%), Positives = 264/411 (64%), Gaps = 36/411 (8%)

Query: 2   VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQS 61
           + +   + I+  K+L+VGAGGIGCELLK L L+GF++I IID+DTI++SNLNRQFLFR+ 
Sbjct: 12  LGQSTFDKIQTCKILVVGAGGIGCELLKNLVLTGFKNIDIIDLDTIDISNLNRQFLFRKQ 71

Query: 62  HVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVN 121
           H+G SKAK+A+++V+K+  Q++ITAHH +VK  +F  EFFKQF++V+N LDN+ ARRHVN
Sbjct: 72  HIGMSKAKIAKESVMKYNEQVNITAHHGDVKSSEFGSEFFKQFDLVMNALDNISARRHVN 131

Query: 122 RLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCI 181
           RLCL+ DVP++ESGT G+LGQV+V  KGKTEC+ECQP   PK + VCTI + PS  +HCI
Sbjct: 132 RLCLSVDVPMIESGTAGYLGQVSVIRKGKTECFECQPIAVPKQFAVCTIRTNPSAPIHCI 191

Query: 182 VWAKDLLFAKLFGDK------------NQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQ 229
           VWAK +LF KLFG K            + +N++   + +  +    E + + ++      
Sbjct: 192 VWAK-MLFGKLFGPKDDDGGGDSSSLTDLDNNIIHGTEELGNIKRDEQLLIEKE----KG 246

Query: 230 YGRRIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSS 289
           + R ++  +F  +IE      + WK++  P  +   +++      Q        +     
Sbjct: 247 FKRWVFHKIFHTDIETLIHMPDLWKDKQPPTSLKLDEILSSKEVSQAEEEGDQLI----- 301

Query: 290 VSAMASLGLKNP-QDTWTLLESSRIFLEALKLFFAKREKEIGN---LSFDKDDQLAVEFV 345
                    K P Q  WT  E+  +FL+ L+    K++ +  N   +++DKDD+LA+ FV
Sbjct: 302 --------FKLPDQKQWTFKENVEVFLDCLEKL--KQQFDQSNSKPMTWDKDDELALSFV 351

Query: 346 TAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVL 396
            +A+NIR+  FGI + S F+ K +AGNI+ A+ATTNA+I GLIV+EAIKV+
Sbjct: 352 CSASNIRSKIFGIPMKSRFDVKSMAGNIIPAIATTNAVIGGLIVMEAIKVV 402

The dimeric enzyme acts as a E1 ligase for sumo. It mediates ATP-dependent activation of sumo and formation of a thioester with a conserved cysteine residue on sae2.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9NAN1|SAE2_CAEEL SUMO-activating enzyme subunit uba-2 OS=Caenorhabditis elegans GN=uba-2 PE=3 SV=3

 Score =  317 bits (811), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 170/412 (41%), Positives = 252/412 (61%), Gaps = 47/412 (11%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           E I  +K+L++GAGGIGCELLK LA++GF+ +H+ID+DTI++SNLNRQFLFR+ HV  SK
Sbjct: 9   EKIVQSKILVIGAGGIGCELLKNLAVTGFRKVHVIDLDTIDISNLNRQFLFRKEHVSSSK 68

Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127
           A  A   V +F PQ+ +T  H ++ + K+N+EFF+ +++VLN LDN  AR +VNR+C AA
Sbjct: 69  AATATQVVKQFCPQIELTFDHDSIFEKKYNMEFFQAYDIVLNALDNRAARNYVNRMCHAA 128

Query: 128 DVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPK-TYPVCTITSTPSKFVHCIVWAKD 186
           + PL++SG+ G+ GQV+V ++GKTECYEC  KP  + TYP CTI +TPS+ +HC VWAK 
Sbjct: 129 NRPLIDSGSGGYFGQVSVIMRGKTECYECVDKPVQQTTYPGCTIRNTPSEHIHCTVWAKH 188

Query: 187 LLFAKLFGDKNQENDLNVRSSDASSSAHAE----------------DVFVRRKDEDIDQY 230
            +F +LFG+ + ++D++    DA    + E                 V  R+  E +D  
Sbjct: 189 -VFNQLFGEVDIDDDVS-PDMDAVDPDNTEAVTTEKEKEAMKEEPAPVGTRQWAESVDYD 246

Query: 231 GRRIYDHVFGYNIEVASSNEETWKNRNRPKPI-----YSADVMPENLTEQNGNVAKNCVV 285
             +++D +F ++IE     E  WK R RP P+      S    P++L +   +       
Sbjct: 247 AAKVFDKLFLHDIEYLCKMEHLWKQRKRPSPLEFHTASSTGGEPQSLCDAQRD------- 299

Query: 286 DTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAK-REKEIGNLSFDKDDQLAVEF 344
           DTS                WTL   +++F   ++    + R +    L+FDKD  + + F
Sbjct: 300 DTS---------------IWTLSTCAKVFSTCIQELLEQIRAEPDVKLAFDKDHAIIMSF 344

Query: 345 VTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVL 396
           V A ANIRA  FGI + S F+ K +AGNI+ A+A+TNAI+AG+IV EA++V+
Sbjct: 345 VAACANIRAKIFGIPMKSQFDIKAMAGNIIPAIASTNAIVAGIIVTEAVRVI 396

The dimeric enzyme acts as a E1 ligase for smo-1. It mediates ATP-dependent activation of smo-1 and formation of a thioester with a conserved cysteine residue on uba-2.

Caenorhabditis elegans (taxid: 6239)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	410
449464696	641	PREDICTED: SUMO-activating enzyme subuni	0.985	0.630	0.830	0.0
449517032	641	PREDICTED: LOW QUALITY PROTEIN: SUMO-act	0.985	0.630	0.827	0.0
255543783	644	ubiquitin-activating enzyme E1b, putativ	0.965	0.614	0.859	0.0
356544157	636	PREDICTED: SUMO-activating enzyme subuni	0.963	0.621	0.858	0.0
356546382	638	PREDICTED: SUMO-activating enzyme subuni	0.963	0.619	0.861	0.0
225428380	634	PREDICTED: SUMO-activating enzyme subuni	0.985	0.637	0.857	0.0
30681414	625	SUMO-activating enzyme subunit 2 [Arabid	0.982	0.644	0.820	0.0
42570865	700	SUMO-activating enzyme subunit 2 [Arabid	0.982	0.575	0.820	0.0
334184353	628	SUMO-activating enzyme subunit 2 [Arabid	0.982	0.641	0.814	0.0
297744435	618	unnamed protein product [Vitis vinifera]	0.946	0.627	0.866	0.0

>gi|449464696|ref|XP_004150065.1| PREDICTED: SUMO-activating enzyme subunit 2-like [Cucumis sativus]

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/406 (83%), Positives = 372/406 (91%), Gaps = 2/406 (0%)

Query: 1   MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
           M S++QL  IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFR+
Sbjct: 1   MASQQQLSVIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRK 60

Query: 61  SHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHV 120
           SHVG SKAKVARDAVL+FRPQ+SIT++HANVK+ +FNV+F KQF+VVLNGLDNLDARRHV
Sbjct: 61  SHVGLSKAKVARDAVLRFRPQVSITSYHANVKNQEFNVDFLKQFSVVLNGLDNLDARRHV 120

Query: 121 NRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHC 180
           NRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHC
Sbjct: 121 NRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHC 180

Query: 181 IVWAKDLLFAKLFGDKNQENDLNVRSSD-ASSSAHAEDVFVRRKDEDIDQYGRRIYDHVF 239
           IVWAKDLLF KLFGDKNQENDLNVRSSD ASSS HAED+F   KDE I+ YGRR++DHVF
Sbjct: 181 IVWAKDLLFTKLFGDKNQENDLNVRSSDPASSSDHAEDIFQLNKDETIEHYGRRVFDHVF 240

Query: 240 GYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSS-VSAMASLGL 298
           GYNIEVA SNE+TWKNRN+P+PIYS D++PE  T+QNGN  KNC  D  S +SAM SLG+
Sbjct: 241 GYNIEVALSNEDTWKNRNKPRPIYSRDILPEEPTKQNGNTDKNCATDDQSLISAMTSLGI 300

Query: 299 KNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGI 358
           KNPQ+ W+L+E+SRIF+EA+KLFF KREK++GNL+FDKDDQLAVEFVTAAANIRA SFGI
Sbjct: 301 KNPQEIWSLMENSRIFIEAIKLFFTKREKDVGNLAFDKDDQLAVEFVTAAANIRAESFGI 360

Query: 359 SLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYR 404
            +HSLFE+KGIAGNIVHAVATTNAIIAGLIVIEAIKVL  D + YR
Sbjct: 361 PMHSLFESKGIAGNIVHAVATTNAIIAGLIVIEAIKVLQNDANNYR 406

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517032|ref|XP_004165550.1| PREDICTED: LOW QUALITY PROTEIN: SUMO-activating enzyme subunit 2-like [Cucumis sativus]

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/406 (82%), Positives = 371/406 (91%), Gaps = 2/406 (0%)

Query: 1   MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
           M S++QL  IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFR+
Sbjct: 1   MASQQQLSVIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRK 60

Query: 61  SHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHV 120
           SHVG SKAKVARDAVL+FRPQ+SIT++HANVK+ +FNV+F KQF+VVLNGLDNLDARRHV
Sbjct: 61  SHVGLSKAKVARDAVLRFRPQVSITSYHANVKNQEFNVDFLKQFSVVLNGLDNLDARRHV 120

Query: 121 NRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHC 180
           NRLCLAADVPLVESGTTGFLGQVTVHV GKTECYECQPKPAPKTYPVCTITSTPSKFVHC
Sbjct: 121 NRLCLAADVPLVESGTTGFLGQVTVHVXGKTECYECQPKPAPKTYPVCTITSTPSKFVHC 180

Query: 181 IVWAKDLLFAKLFGDKNQENDLNVRSSD-ASSSAHAEDVFVRRKDEDIDQYGRRIYDHVF 239
           IVWAKDLLF KLFGDKNQENDLNVRSSD ASSS HAED+F   KDE I+ YGRR++DHVF
Sbjct: 181 IVWAKDLLFTKLFGDKNQENDLNVRSSDPASSSDHAEDIFQLNKDETIEHYGRRVFDHVF 240

Query: 240 GYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSS-VSAMASLGL 298
           GYNIEVA SNE+TWKNRN+P+PIYS D++PE  T+QNGN  KNC  D  S +SAM SLG+
Sbjct: 241 GYNIEVALSNEDTWKNRNKPRPIYSRDILPEEPTKQNGNTDKNCATDDQSLISAMTSLGI 300

Query: 299 KNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGI 358
           KNPQ+ W+L+E+SRIF+EA+KLFF KREK++GNL+FDKDDQLAVEFVTAAANIRA SFGI
Sbjct: 301 KNPQEIWSLMENSRIFIEAIKLFFTKREKDVGNLAFDKDDQLAVEFVTAAANIRAESFGI 360

Query: 359 SLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYR 404
            +HSLFE+KGIAGNIVHAVATTNAIIAGLIVIEAIKVL  D + YR
Sbjct: 361 PMHSLFESKGIAGNIVHAVATTNAIIAGLIVIEAIKVLQNDANNYR 406

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543783|ref|XP_002512954.1| ubiquitin-activating enzyme E1b, putative [Ricinus communis] gi|223547965|gb|EEF49457.1| ubiquitin-activating enzyme E1b, putative [Ricinus communis]

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/398 (85%), Positives = 366/398 (91%), Gaps = 2/398 (0%)

Query: 9   AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKA 68
           A+KGAKVLMVGAGGIGCELLKTLALSGF+DIHIIDMDTIEVSNLNRQFLFR+SHVGQSKA
Sbjct: 9   AVKGAKVLMVGAGGIGCELLKTLALSGFEDIHIIDMDTIEVSNLNRQFLFRKSHVGQSKA 68

Query: 69  KVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAAD 128
           KVARDAVL+F+P + IT++HANVKD  FNV+FFKQF+ VLNGLDNLDARRHVNRLCLAA+
Sbjct: 69  KVARDAVLRFKPHIRITSYHANVKDSDFNVDFFKQFSAVLNGLDNLDARRHVNRLCLAAE 128

Query: 129 VPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLL 188
           VPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPK+YPVCTITSTPSKFVHCIVWAKDLL
Sbjct: 129 VPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKSYPVCTITSTPSKFVHCIVWAKDLL 188

Query: 189 FAKLFGDKNQENDLNVRSSDAS-SSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVAS 247
           FAKLFGDKNQENDLNVRSSDAS SS HAEDVF R  +EDI+QYGRRIYDHVFGYNIE A 
Sbjct: 189 FAKLFGDKNQENDLNVRSSDASNSSEHAEDVFERGNNEDIEQYGRRIYDHVFGYNIETAL 248

Query: 248 SNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVV-DTSSVSAMASLGLKNPQDTWT 306
           SNEETWKNRNRP+PIYS DV+P+  ++QNG+V K     D SSVSAMASLGLKNPQ+ W+
Sbjct: 249 SNEETWKNRNRPRPIYSRDVLPDRPSQQNGSVDKGSASHDPSSVSAMASLGLKNPQEIWS 308

Query: 307 LLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEA 366
           L E+SR+F EALKLFF  REKEIGNLSFDKDDQLAVE VTAAANIRAASFGI LHSLFEA
Sbjct: 309 LTENSRVFFEALKLFFVSREKEIGNLSFDKDDQLAVEIVTAAANIRAASFGIPLHSLFEA 368

Query: 367 KGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYR 404
           KGIAGNIVHAVATTNAIIAGLIVIEAIKVL KD D YR
Sbjct: 369 KGIAGNIVHAVATTNAIIAGLIVIEAIKVLEKDADNYR 406

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544157|ref|XP_003540521.1| PREDICTED: SUMO-activating enzyme subunit 2-like [Glycine max]

 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/396 (85%), Positives = 363/396 (91%), Gaps = 1/396 (0%)

Query: 10  IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAK 69
           IK AKVLMVGAGGIGCELLKTLALSGF DIHIIDMDTIEVSNLNRQFLFRQ HVGQSKAK
Sbjct: 9   IKDAKVLMVGAGGIGCELLKTLALSGFPDIHIIDMDTIEVSNLNRQFLFRQFHVGQSKAK 68

Query: 70  VARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADV 129
           VARDAVLKFRP ++IT +HANVKDP+FNV+FFKQFNVVLNGLDNLDARRHVNRLCLAA+V
Sbjct: 69  VARDAVLKFRPHINITPYHANVKDPEFNVDFFKQFNVVLNGLDNLDARRHVNRLCLAANV 128

Query: 130 PLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLF 189
           PLVESGTTGFLGQVTVHVKG+TECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLF
Sbjct: 129 PLVESGTTGFLGQVTVHVKGRTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLF 188

Query: 190 AKLFGDKNQENDLNVRSSD-ASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASS 248
           AKLFGDKNQ+NDLNVRSSD ASSS + EDVF RRKDEDIDQYGR+I+DHVFGYNIE+A S
Sbjct: 189 AKLFGDKNQDNDLNVRSSDAASSSKNVEDVFERRKDEDIDQYGRKIFDHVFGYNIELALS 248

Query: 249 NEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLL 308
           NEETWKNRNRPKPIYS D++ +   +QNGN+ K    D  SVSAMASLG+KNPQD W+L 
Sbjct: 249 NEETWKNRNRPKPIYSKDILSDEPAQQNGNLEKKYESDELSVSAMASLGMKNPQDIWSLK 308

Query: 309 ESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKG 368
           E+SRIFLEA +LFF KREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGI L +LFEAKG
Sbjct: 309 ENSRIFLEAFRLFFTKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGIPLQNLFEAKG 368

Query: 369 IAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYR 404
           IAGNIVHAVATTNA+IAGLIVIEAIKVL  D   YR
Sbjct: 369 IAGNIVHAVATTNAVIAGLIVIEAIKVLKNDIKNYR 404

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546382|ref|XP_003541605.1| PREDICTED: SUMO-activating enzyme subunit 2-like [Glycine max]

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/396 (86%), Positives = 362/396 (91%), Gaps = 1/396 (0%)

Query: 10  IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAK 69
           IK AKVLMVGAGGIGCELLKTLALSGF DIHIIDMDTIEVSNLNRQFLFRQ HVGQSKAK
Sbjct: 11  IKDAKVLMVGAGGIGCELLKTLALSGFPDIHIIDMDTIEVSNLNRQFLFRQFHVGQSKAK 70

Query: 70  VARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADV 129
           VARDAVLKFRP ++IT +HANVKDP+FNV+FFKQFNVVLNGLDNLDARRHVNRLCLAA+V
Sbjct: 71  VARDAVLKFRPHINITPYHANVKDPEFNVDFFKQFNVVLNGLDNLDARRHVNRLCLAANV 130

Query: 130 PLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLF 189
           PLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLF
Sbjct: 131 PLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLF 190

Query: 190 AKLFGDKNQENDLNVRSSD-ASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASS 248
           AKLFGDKNQ+NDLNVRSSD ASSS + EDVF RRKDEDIDQYGR+I+DHVFGYNIE+A S
Sbjct: 191 AKLFGDKNQDNDLNVRSSDAASSSKNVEDVFERRKDEDIDQYGRKIFDHVFGYNIELALS 250

Query: 249 NEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLL 308
           NEETWKNRNRPKPIYS DV+ +   +QNGN+ K    D   VSAMASLG+KNPQD W+L 
Sbjct: 251 NEETWKNRNRPKPIYSKDVLSDEPAQQNGNLEKKYESDELPVSAMASLGMKNPQDIWSLK 310

Query: 309 ESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKG 368
           E+SRIFLEA +LFF KREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGI L +LFEAKG
Sbjct: 311 ENSRIFLEAFRLFFTKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGIPLQNLFEAKG 370

Query: 369 IAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYR 404
           IAGNIVHAVATTNA+IAGLIVIEAIKVL  D   YR
Sbjct: 371 IAGNIVHAVATTNAVIAGLIVIEAIKVLNNDIKNYR 406

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428380|ref|XP_002283529.1| PREDICTED: SUMO-activating enzyme subunit 2-like [Vitis vinifera]

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/406 (85%), Positives = 370/406 (91%), Gaps = 2/406 (0%)

Query: 1   MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
           M S ++  AIKGAKVLMVGAGGIGCELLKTLALSGF+DIHIIDMDTIEVSNLNRQFLFRQ
Sbjct: 1   MASHQRSPAIKGAKVLMVGAGGIGCELLKTLALSGFEDIHIIDMDTIEVSNLNRQFLFRQ 60

Query: 61  SHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHV 120
           SHVGQSKAKVARDAVL+FRP +SIT++HANVKDP FNV+FFKQFNVVLNGLDNLDARRHV
Sbjct: 61  SHVGQSKAKVARDAVLRFRPHISITSYHANVKDPDFNVDFFKQFNVVLNGLDNLDARRHV 120

Query: 121 NRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHC 180
           NRLCLA+DVPLVESGTTGFLGQVTVHVKGKTECYECQPKP PKTYPVCTITSTPSKFVHC
Sbjct: 121 NRLCLASDVPLVESGTTGFLGQVTVHVKGKTECYECQPKPTPKTYPVCTITSTPSKFVHC 180

Query: 181 IVWAKDLLFAKLFGDKNQENDL-NVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVF 239
           IVWAKDLLFAKLFGDKNQENDL    S+ ASSS  AEDVF R+ DE ID+Y +RIYDHVF
Sbjct: 181 IVWAKDLLFAKLFGDKNQENDLNARSSNAASSSQQAEDVFERQNDEGIDEYAKRIYDHVF 240

Query: 240 GYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTS-SVSAMASLGL 298
           GYNI VA SNEETWKNRNRPKP+YS DV PE  ++QNGN+ KNC  D   SVSAMASLGL
Sbjct: 241 GYNIGVALSNEETWKNRNRPKPLYSRDVFPEEPSQQNGNMDKNCATDDPLSVSAMASLGL 300

Query: 299 KNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGI 358
           KNPQD W+LLE+SRIFLEALKLFF KREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGI
Sbjct: 301 KNPQDIWSLLENSRIFLEALKLFFGKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGI 360

Query: 359 SLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYR 404
            LHSLFEAKGIAGNIVHAVATTNA+IAGLIVIEAIKVL +D + YR
Sbjct: 361 PLHSLFEAKGIAGNIVHAVATTNAVIAGLIVIEAIKVLQRDANNYR 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30681414|ref|NP_179742.2| SUMO-activating enzyme subunit 2 [Arabidopsis thaliana] gi|26450535|dbj|BAC42380.1| putative ubiquitin activating enzyme [Arabidopsis thaliana] gi|208879522|gb|ACI31306.1| At2g21470 [Arabidopsis thaliana] gi|330252087|gb|AEC07181.1| SUMO-activating enzyme subunit 2 [Arabidopsis thaliana]

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/407 (82%), Positives = 372/407 (91%), Gaps = 4/407 (0%)

Query: 1   MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
           M +++Q  AIKGAKVLMVGAGGIGCELLKTLALSGF+DIHIIDMDTIEVSNLNRQFLFR+
Sbjct: 1   MATQQQQSAIKGAKVLMVGAGGIGCELLKTLALSGFEDIHIIDMDTIEVSNLNRQFLFRR 60

Query: 61  SHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHV 120
           SHVGQSKAKVARDAVL+FRP ++I ++HANVK+P+F+V+FFKQF+VVLNGLDNLDARRHV
Sbjct: 61  SHVGQSKAKVARDAVLRFRPNINIRSYHANVKNPEFDVDFFKQFDVVLNGLDNLDARRHV 120

Query: 121 NRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHC 180
           NRLCLAADVPLVESGTTGFLGQVTVH+KGKTECYECQ KPAPKTYPVCTITSTP+KFVHC
Sbjct: 121 NRLCLAADVPLVESGTTGFLGQVTVHIKGKTECYECQTKPAPKTYPVCTITSTPTKFVHC 180

Query: 181 IVWAKDLLFAKLFGDKNQENDLNVRSSD-ASSSAHAEDVFVRRKDEDIDQYGRRIYDHVF 239
           IVWAKDLLFAKLFGDKNQ+NDLNVRS++ ASSS   EDVF R +DEDI+QYGR+IYDHVF
Sbjct: 181 IVWAKDLLFAKLFGDKNQDNDLNVRSNNSASSSKETEDVFERSEDEDIEQYGRKIYDHVF 240

Query: 240 GYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSS--VSAMASLG 297
           G NIE A SNEETWKNR RP+PIYS DV+PE+LT+QNG+  +NC V      VSAM SLG
Sbjct: 241 GSNIEAALSNEETWKNRRRPRPIYSKDVLPESLTQQNGS-TQNCSVTDGDLMVSAMPSLG 299

Query: 298 LKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFG 357
           LKNPQ+ W L ++S +F+EALKLFFAKR+KEIG+L+FDKDDQLAVEFVTAAANIRA SFG
Sbjct: 300 LKNPQELWGLTQNSLVFIEALKLFFAKRKKEIGHLTFDKDDQLAVEFVTAAANIRAESFG 359

Query: 358 ISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYR 404
           I LHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVL KD DK+R
Sbjct: 360 IPLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLKKDVDKFR 406

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42570865|ref|NP_973506.1| SUMO-activating enzyme subunit 2 [Arabidopsis thaliana] gi|75265963|sp|Q9SJT1.1|SAE2_ARATH RecName: Full=SUMO-activating enzyme subunit 2; AltName: Full=Protein EMBRYO DEFECTIVE 2764; AltName: Full=Ubiquitin-like 1-activating enzyme E1B gi|4567278|gb|AAD23691.1| putative ubiquitin activating enzyme [Arabidopsis thaliana] gi|330252088|gb|AEC07182.1| SUMO-activating enzyme subunit 2 [Arabidopsis thaliana]

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/407 (82%), Positives = 372/407 (91%), Gaps = 4/407 (0%)

Query: 1   MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
           M +++Q  AIKGAKVLMVGAGGIGCELLKTLALSGF+DIHIIDMDTIEVSNLNRQFLFR+
Sbjct: 1   MATQQQQSAIKGAKVLMVGAGGIGCELLKTLALSGFEDIHIIDMDTIEVSNLNRQFLFRR 60

Query: 61  SHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHV 120
           SHVGQSKAKVARDAVL+FRP ++I ++HANVK+P+F+V+FFKQF+VVLNGLDNLDARRHV
Sbjct: 61  SHVGQSKAKVARDAVLRFRPNINIRSYHANVKNPEFDVDFFKQFDVVLNGLDNLDARRHV 120

Query: 121 NRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHC 180
           NRLCLAADVPLVESGTTGFLGQVTVH+KGKTECYECQ KPAPKTYPVCTITSTP+KFVHC
Sbjct: 121 NRLCLAADVPLVESGTTGFLGQVTVHIKGKTECYECQTKPAPKTYPVCTITSTPTKFVHC 180

Query: 181 IVWAKDLLFAKLFGDKNQENDLNVRSSD-ASSSAHAEDVFVRRKDEDIDQYGRRIYDHVF 239
           IVWAKDLLFAKLFGDKNQ+NDLNVRS++ ASSS   EDVF R +DEDI+QYGR+IYDHVF
Sbjct: 181 IVWAKDLLFAKLFGDKNQDNDLNVRSNNSASSSKETEDVFERSEDEDIEQYGRKIYDHVF 240

Query: 240 GYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSS--VSAMASLG 297
           G NIE A SNEETWKNR RP+PIYS DV+PE+LT+QNG+  +NC V      VSAM SLG
Sbjct: 241 GSNIEAALSNEETWKNRRRPRPIYSKDVLPESLTQQNGS-TQNCSVTDGDLMVSAMPSLG 299

Query: 298 LKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFG 357
           LKNPQ+ W L ++S +F+EALKLFFAKR+KEIG+L+FDKDDQLAVEFVTAAANIRA SFG
Sbjct: 300 LKNPQELWGLTQNSLVFIEALKLFFAKRKKEIGHLTFDKDDQLAVEFVTAAANIRAESFG 359

Query: 358 ISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYR 404
           I LHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVL KD DK+R
Sbjct: 360 IPLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLKKDVDKFR 406

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334184353|ref|NP_001189570.1| SUMO-activating enzyme subunit 2 [Arabidopsis thaliana] gi|330252089|gb|AEC07183.1| SUMO-activating enzyme subunit 2 [Arabidopsis thaliana]

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/410 (81%), Positives = 372/410 (90%), Gaps = 7/410 (1%)

Query: 1   MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
           M +++Q  AIKGAKVLMVGAGGIGCELLKTLALSGF+DIHIIDMDTIEVSNLNRQFLFR+
Sbjct: 1   MATQQQQSAIKGAKVLMVGAGGIGCELLKTLALSGFEDIHIIDMDTIEVSNLNRQFLFRR 60

Query: 61  SHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHV 120
           SHVGQSKAKVARDAVL+FRP ++I ++HANVK+P+F+V+FFKQF+VVLNGLDNLDARRHV
Sbjct: 61  SHVGQSKAKVARDAVLRFRPNINIRSYHANVKNPEFDVDFFKQFDVVLNGLDNLDARRHV 120

Query: 121 NRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHC 180
           NRLCLAADVPLVESGTTGFLGQVTVH+KGKTECYECQ KPAPKTYPVCTITSTP+KFVHC
Sbjct: 121 NRLCLAADVPLVESGTTGFLGQVTVHIKGKTECYECQTKPAPKTYPVCTITSTPTKFVHC 180

Query: 181 IVWAKDLLFAKLFGDKNQENDLNVRSSD-ASSSAHAEDVFVRRKDEDIDQYGRRIYDHVF 239
           IVWAKDLLFAKLFGDKNQ+NDLNVRS++ ASSS   EDVF R +DEDI+QYGR+IYDHVF
Sbjct: 181 IVWAKDLLFAKLFGDKNQDNDLNVRSNNSASSSKETEDVFERSEDEDIEQYGRKIYDHVF 240

Query: 240 GYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSS--VSAMASLG 297
           G NIE A SNEETWKNR RP+PIYS DV+PE+LT+QNG+  +NC V      VSAM SLG
Sbjct: 241 GSNIEAALSNEETWKNRRRPRPIYSKDVLPESLTQQNGS-TQNCSVTDGDLMVSAMPSLG 299

Query: 298 LKNPQDTWTLLESSRIFLEALKLFFAKREK---EIGNLSFDKDDQLAVEFVTAAANIRAA 354
           LKNPQ+ W L ++S +F+EALKLFFAKR+K   EIG+L+FDKDDQLAVEFVTAAANIRA 
Sbjct: 300 LKNPQELWGLTQNSLVFIEALKLFFAKRKKVCVEIGHLTFDKDDQLAVEFVTAAANIRAE 359

Query: 355 SFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYR 404
           SFGI LHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVL KD DK+R
Sbjct: 360 SFGIPLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLKKDVDKFR 409

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744435|emb|CBI37697.3| unnamed protein product [Vitis vinifera]

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/390 (86%), Positives = 358/390 (91%), Gaps = 2/390 (0%)

Query: 17  MVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVL 76
           MVGAGGIGCELLKTLALSGF+DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVL
Sbjct: 1   MVGAGGIGCELLKTLALSGFEDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVL 60

Query: 77  KFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT 136
           +FRP +SIT++HANVKDP FNV+FFKQFNVVLNGLDNLDARRHVNRLCLA+DVPLVESGT
Sbjct: 61  RFRPHISITSYHANVKDPDFNVDFFKQFNVVLNGLDNLDARRHVNRLCLASDVPLVESGT 120

Query: 137 TGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDK 196
           TGFLGQVTVHVKGKTECYECQPKP PKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDK
Sbjct: 121 TGFLGQVTVHVKGKTECYECQPKPTPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDK 180

Query: 197 NQENDL-NVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASSNEETWKN 255
           NQENDL    S+ ASSS  AEDVF R+ DE ID+Y +RIYDHVFGYNI VA SNEETWKN
Sbjct: 181 NQENDLNARSSNAASSSQQAEDVFERQNDEGIDEYAKRIYDHVFGYNIGVALSNEETWKN 240

Query: 256 RNRPKPIYSADVMPENLTEQNGNVAKNCVVDTS-SVSAMASLGLKNPQDTWTLLESSRIF 314
           RNRPKP+YS DV PE  ++QNGN+ KNC  D   SVSAMASLGLKNPQD W+LLE+SRIF
Sbjct: 241 RNRPKPLYSRDVFPEEPSQQNGNMDKNCATDDPLSVSAMASLGLKNPQDIWSLLENSRIF 300

Query: 315 LEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIV 374
           LEALKLFF KREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGI LHSLFEAKGIAGNIV
Sbjct: 301 LEALKLFFGKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGIPLHSLFEAKGIAGNIV 360

Query: 375 HAVATTNAIIAGLIVIEAIKVLLKDTDKYR 404
           HAVATTNA+IAGLIVIEAIKVL +D + YR
Sbjct: 361 HAVATTNAVIAGLIVIEAIKVLQRDANNYR 390

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	410
TAIR|locus:2050069	700	SAE2 "SUMO-activating enzyme 2	0.982	0.575	0.808	4.1e-175
DICTYBASE|DDB_G0286919	661	uba2 "sumo-activating enzyme s	0.924	0.573	0.444	8.6e-88
UNIPROTKB|Q9UBT2	640	UBA2 "SUMO-activating enzyme s	0.939	0.601	0.458	6.9e-86
MGI|MGI:1858313	638	Uba2 "ubiquitin-like modifier	0.936	0.601	0.459	1.1e-85
POMBASE|SPBC16H5.03c	628	fub2 "SUMO E1-like activator e	0.929	0.606	0.459	3.8e-85
ASPGD|ASPL0000050249	610	AN2450 [Emericella nidulans (t	0.914	0.614	0.461	4.9e-85
UNIPROTKB|E2R837	640	UBA2 "Uncharacterized protein"	0.936	0.6	0.462	4.9e-85
UNIPROTKB|Q28GH3	641	uba2 "SUMO-activating enzyme s	0.931	0.595	0.450	4.9e-85
ZFIN|ZDB-GENE-040426-2681	651	uba2 "ubiquitin-like modifier	0.965	0.608	0.436	6.2e-85
UNIPROTKB|Q7ZY60	641	uba2-b "SUMO-activating enzyme	0.929	0.594	0.451	1e-84

TAIR|locus:2050069 SAE2 "SUMO-activating enzyme 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1701 (603.8 bits), Expect = 4.1e-175, P = 4.1e-175
 Identities = 329/407 (80%), Positives = 365/407 (89%)

Query:     1 MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
             M +++Q  AIKGAKVLMVGAGGIGCELLKTLALSGF+DIHIIDMDTIEVSNLNRQFLFR+
Sbjct:     1 MATQQQQSAIKGAKVLMVGAGGIGCELLKTLALSGFEDIHIIDMDTIEVSNLNRQFLFRR 60

Query:    61 SHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHV 120
             SHVGQSKAKVARDAVL+FRP ++I ++HANVK+P+F+V+FFKQF+VVLNGLDNLDARRHV
Sbjct:    61 SHVGQSKAKVARDAVLRFRPNINIRSYHANVKNPEFDVDFFKQFDVVLNGLDNLDARRHV 120

Query:   121 NRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHC 180
             NRLCLAADVPLVESGTTGFLGQVTVH+KGKTECYECQ KPAPKTYPVCTITSTP+KFVHC
Sbjct:   121 NRLCLAADVPLVESGTTGFLGQVTVHIKGKTECYECQTKPAPKTYPVCTITSTPTKFVHC 180

Query:   181 IVWAKDLLFAKLFGDKNQENDLNVRXXXXXXXXX-XEDVFVRRKDEDIDQYGRRIYDHVF 239
             IVWAKDLLFAKLFGDKNQ+NDLNVR           EDVF R +DEDI+QYGR+IYDHVF
Sbjct:   181 IVWAKDLLFAKLFGDKNQDNDLNVRSNNSASSSKETEDVFERSEDEDIEQYGRKIYDHVF 240

Query:   240 GYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSS--VSAMASLG 297
             G NIE A SNEETWKNR RP+PIYS DV+PE+LT+QNG+  +NC V      VSAM SLG
Sbjct:   241 GSNIEAALSNEETWKNRRRPRPIYSKDVLPESLTQQNGST-QNCSVTDGDLMVSAMPSLG 299

Query:   298 LKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFG 357
             LKNPQ+ W L ++S +F+EALKLFFAKR+KEIG+L+FDKDDQLAVEFVTAAANIRA SFG
Sbjct:   300 LKNPQELWGLTQNSLVFIEALKLFFAKRKKEIGHLTFDKDDQLAVEFVTAAANIRAESFG 359

Query:   358 ISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYR 404
             I LHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVL KD DK+R
Sbjct:   360 IPLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLKKDVDKFR 406

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0016925 "protein sumoylation" evidence=ISS;IDA

GO:0019948 "SUMO activating enzyme activity" evidence=ISS;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

DICTYBASE|DDB_G0286919 uba2 "sumo-activating enzyme subunit 2" [Dictyostelium discoideum (taxid:44689)]

 Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
 Identities = 181/407 (44%), Positives = 266/407 (65%)

Query:     2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQS 61
             + +   + I+  K+L+VGAGGIGCELLK L L+GF++I IID+DTI++SNLNRQFLFR+ 
Sbjct:    12 LGQSTFDKIQTCKILVVGAGGIGCELLKNLVLTGFKNIDIIDLDTIDISNLNRQFLFRKQ 71

Query:    62 HVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVN 121
             H+G SKAK+A+++V+K+  Q++ITAHH +VK  +F  EFFKQF++V+N LDN+ ARRHVN
Sbjct:    72 HIGMSKAKIAKESVMKYNEQVNITAHHGDVKSSEFGSEFFKQFDLVMNALDNISARRHVN 131

Query:   122 RLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCI 181
             RLCL+ DVP++ESGT G+LGQV+V  KGKTEC+ECQP   PK + VCTI + PS  +HCI
Sbjct:   132 RLCLSVDVPMIESGTAGYLGQVSVIRKGKTECFECQPIAVPKQFAVCTIRTNPSAPIHCI 191

Query:   182 VWAKDLLFAKLFGDKNQE---NDLNVRXXXXXXXXXXEDVFVRRKDED--IDQ---YGRR 233
             VWAK +LF KLFG K+ +   +  ++           E++   ++DE   I++   + R 
Sbjct:   192 VWAK-MLFGKLFGPKDDDGGGDSSSLTDLDNNIIHGTEELGNIKRDEQLLIEKEKGFKRW 250

Query:   234 IYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAM 293
             ++  +F  +IE      + WK++  P  +   +++      Q        +         
Sbjct:   251 VFHKIFHTDIETLIHMPDLWKDKQPPTSLKLDEILSSKEVSQAEEEGDQLI--------- 301

Query:   294 ASLGLKNP-QDTWTLLESSRIFLEALKLFFAKREKEIGN---LSFDKDDQLAVEFVTAAA 349
                  K P Q  WT  E+  +FL+ L+    K++ +  N   +++DKDD+LA+ FV +A+
Sbjct:   302 ----FKLPDQKQWTFKENVEVFLDCLEKL--KQQFDQSNSKPMTWDKDDELALSFVCSAS 355

Query:   350 NIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVL 396
             NIR+  FGI + S F+ K +AGNI+ A+ATTNA+I GLIV+EAIKV+
Sbjct:   356 NIRSKIFGIPMKSRFDVKSMAGNIIPAIATTNAVIGGLIVMEAIKVV 402

GO:0008641 "small protein activating enzyme activity" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0031510 "SUMO activating enzyme complex" evidence=ISS

GO:0019948 "SUMO activating enzyme activity" evidence=ISS

GO:0016925 "protein sumoylation" evidence=IEA;ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q9UBT2 UBA2 "SUMO-activating enzyme subunit 2" [Homo sapiens (taxid:9606)]

 Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
 Identities = 193/421 (45%), Positives = 274/421 (65%)

Query:     5 RQL-EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV 63
             R+L EA+ G +VL+VGAGGIGCELLK L L+GF  I +ID+DTI+VSNLNRQFLF++ HV
Sbjct:     9 RELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHV 68

Query:    64 GQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL 123
             G+SKA+VA+++VL+F P+ +I A+H ++ +P +NVEFF+QF +V+N LDN  AR HVNR+
Sbjct:    69 GRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRM 128

Query:   124 CLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVW 183
             CLAADVPL+ESGT G+LGQVT   KG TECYEC PKP  +T+P CTI +TPS+ +HCIVW
Sbjct:   129 CLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGCTIRNTPSEPIHCIVW 188

Query:   184 AKDLLFAKLFGDKNQENDLNV-RXXXXXXXXXXE-DVFVRRKDEDID-------QYGRRI 234
             AK  LF +LFG+++ + +++  R          E +   R  +ED D       ++ +  
Sbjct:   189 AK-YLFNQLFGEEDADQEVSPDRADPEAAWEPTEAEARARASNEDGDIKRISTKEWAKST 247

Query:   235 -YDHV------FGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDT 287
              YD V      F  +I    + ++ W+ R  P P+  A+V  +   E N +  +N     
Sbjct:   248 GYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQG-EETNASDQQN----- 301

Query:   288 SSVSAMASLGLKNPQDTWTLLESSRIF---LEALKLFFAKREKEIG-NLSFDKDDQLAVE 343
                     LGLK+ Q    +   +R+F   +E L++  A  EK  G  L +DKDD  A++
Sbjct:   302 -----EPQLGLKD-QQVLDVKSYARLFSKSIETLRVHLA--EKGDGAELIWDKDDPSAMD 353

Query:   344 FVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKY 403
             FVT+AAN+R   F +++ S F+ K +AGNI+ A+ATTNA+IAGLIV+E +K+L    D+ 
Sbjct:   354 FVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQC 413

Query:   404 R 404
             R
Sbjct:   414 R 414

GO:0005524 "ATP binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA;IDA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0019948 "SUMO activating enzyme activity" evidence=IDA

GO:0008047 "enzyme activator activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0043085 "positive regulation of catalytic activity" evidence=TAS

MGI|MGI:1858313 Uba2 "ubiquitin-like modifier activating enzyme 2" [Mus musculus (taxid:10090)]

 Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
 Identities = 193/420 (45%), Positives = 269/420 (64%)

Query:     5 RQL-EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV 63
             R+L EA+ G +VL+VGAGGIGCELLK L L+GF  I +ID+DTI+VSNLNRQFLF++ HV
Sbjct:     9 RELAEAVSGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHV 68

Query:    64 GQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL 123
             G+SKA+VA+++VL+F PQ +I AHH ++ +P +NVEFF+QF +V+N LDN  AR HVNR+
Sbjct:    69 GRSKAQVAKESVLQFHPQANIEAHHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRM 128

Query:   124 CLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVW 183
             CLAADVPL+ESGT G+LGQVT   KG TECYEC PKP  +T+P CTI +TPS+ +HCIVW
Sbjct:   129 CLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGCTIRNTPSEPIHCIVW 188

Query:   184 AKDLLFAKLFGDKNQENDLNV-RXXXXXXXXXXE-DVFVRRKDEDID-------QYGRRI 234
             AK  LF +LFG+++ + +++  R          E +   R  +ED D       ++ +  
Sbjct:   189 AK-YLFNQLFGEEDADQEVSPDRADPEAAWEPTEAEARARASNEDGDIKRISTKEWAKST 247

Query:   235 -YDHV------FGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDT 287
              YD V      F  +I    + ++ W+ R  P P+  A+V  +   E N +         
Sbjct:   248 GYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQG--EANADQQNE----- 300

Query:   288 SSVSAMASLGLKNPQ--DTWTLLESSRIFLEALKLFFAKREKEIG-NLSFDKDDQLAVEF 344
                     LGLK+ Q  D  +        +E L++  A  EK  G  L +DKDD  A++F
Sbjct:   301 ------PQLGLKDQQVLDVKSYASLFSKSIETLRVHLA--EKGDGAELIWDKDDPPAMDF 352

Query:   345 VTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYR 404
             VT+AAN+R   F +++ S F+ K +AGNI+ A+ATTNA+IAGLIV+E +K+L    D+ R
Sbjct:   353 VTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCR 412

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0008641 "small protein activating enzyme activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016925 "protein sumoylation" evidence=ISO

GO:0019948 "SUMO activating enzyme activity" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=ISO

POMBASE|SPBC16H5.03c fub2 "SUMO E1-like activator enzyme Fub2 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 852 (305.0 bits), Expect = 3.8e-85, P = 3.8e-85
 Identities = 181/394 (45%), Positives = 249/394 (63%)

Query:     7 LEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQS 66
             L   K AKVL+VGAGGIGCELLK L +SG +++HIID+DTI++SNLNRQFLFR+ HV Q 
Sbjct:    20 LRNFKSAKVLLVGAGGIGCELLKNLLMSGVKEVHIIDLDTIDLSNLNRQFLFRKKHVKQP 79

Query:    67 KAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA 126
             KA VA      F P + + A+HAN+K+ +FNV +F+QF++V N LDNLDARRHVN+ CL 
Sbjct:    80 KAIVAAKTASSFNPNVKLEAYHANIKEDRFNVAWFRQFDLVFNALDNLDARRHVNKQCLL 139

Query:   127 ADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKD 186
             A VPL+ESGTTGFLGQV V + GKTECY+C PK  PKTYPVCTI STPS+ +HC+VWAK 
Sbjct:   140 ASVPLIESGTTGFLGQVQVIIHGKTECYDCNPKEPPKTYPVCTIRSTPSQPIHCVVWAKS 199

Query:   187 LLFAKLFGDKNQENDLNVRXXXXXXXXXXEDVFVRRKDEDIDQYGRRIYDHVFGYN-IEV 245
               F +LF + +QE+D  +           E   + R+  ++++    I     G+  I  
Sbjct:   200 YFFPQLFSN-DQESDGIIDNVSANEMERREIAELARETTELNELRSSIGQSDNGFEKIFT 258

Query:   246 ASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTW 305
                 ++  + R  P   ++    P+ L+     + +N    TS           N Q+ W
Sbjct:   259 KMFTKDIVRLREVPDA-WTYRSPPKELSYSE--LLENAEKATSP--------WLNEQNVW 307

Query:   306 TLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFE 365
              + ES  +  ++++    + +    +LSFDKDD+  ++FV AAAN+RA  FGI   S F+
Sbjct:   308 NVAESFAVLRDSIRRLALRSKSSKDDLSFDKDDKDTLDFVAAAANLRAHVFGIQQLSEFD 367

Query:   366 AKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKD 399
              K +AGNI+ A+ATTNA+IAGL + +AIKVL  D
Sbjct:   368 IKQMAGNIIPAIATTNAVIAGLCITQAIKVLQGD 401

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0016874 "ligase activity" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IGI

GO:0019948 "SUMO activating enzyme activity" evidence=ISO

GO:0031510 "SUMO activating enzyme complex" evidence=TAS

GO:0046872 "metal ion binding" evidence=IEA

ASPGD|ASPL0000050249 AN2450 [Emericella nidulans (taxid:162425)]

 Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
 Identities = 190/412 (46%), Positives = 256/412 (62%)

Query:     6 QLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQ 65
             Q   I+ ++VL+VGAGGIGCELLK L L+GF +IH+ID+DTI++SNLNRQFLFR  H+ +
Sbjct:    14 QANRIRESRVLLVGAGGIGCELLKNLLLTGFGEIHVIDLDTIDLSNLNRQFLFRHEHIKK 73

Query:    66 SKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL 125
              KA VA++   KF+P   I A+HAN+KD KF+V++F  FNVV N LDNLDARRHVN +CL
Sbjct:    74 PKAIVAKEVAQKFQPSARIEAYHANIKDSKFDVDWFATFNVVFNALDNLDARRHVNMMCL 133

Query:   126 AADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAK 185
             AADVPL+ESGTTGF GQV V  K  TECY+C  K  PK++PVCTI STPS+ +HCIVWAK
Sbjct:   134 AADVPLIESGTTGFNGQVQVIKKNVTECYDCNSKEVPKSFPVCTIRSTPSQPIHCIVWAK 193

Query:   186 DLLFAKLFGDKNQENDLNVRXXXXXXXXXXEDVFVRRKD---EDIDQ------YGRRIYD 236
               L  +LFG    E D              E   ++R+    ++I Q      + ++++D
Sbjct:   194 SYLLPELFG--TSETDTEEFDYSADADNVEEIENLQREARALKEIRQSMGSAEFAQKVFD 251

Query:   237 HVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASL 296
              VF  +I      E+ W +R  P+P+        +  E  G +        S+V    SL
Sbjct:   252 KVFKEDINRLRGMEDMWTSRKAPEPL--------DFKELEGTL--------STVEPEVSL 295

Query:   297 GLKNPQDTWTLLESSRIFLEAL----KLFFAKREKEIGN---LSFDKDDQLAVEFVTAAA 349
                  Q  WT+ E+  +F ++L    K     + +E G+   L FDKDD   ++FVTA+A
Sbjct:   296 ---KDQRVWTVSENLAVFKDSLDRLSKRLKTLQSEESGSPAVLVFDKDDVDTLDFVTASA 352

Query:   350 NIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTD 401
             N+RA  FGI   S F+ K +AGNI+ A+ATTNA+ AGL V++A+KVL  D D
Sbjct:   353 NLRATIFGIEPKSKFDTKQMAGNIIPAIATTNAMTAGLCVLQALKVLKGDYD 404

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008641 "small protein activating enzyme activity" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA

UNIPROTKB|E2R837 UBA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
 Identities = 195/422 (46%), Positives = 274/422 (64%)

Query:     5 RQL-EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV 63
             R+L EA+ G +VL+VGAGGIGCELLK L L+GF  I +ID+DTI+VSNLNRQFLF++ HV
Sbjct:     9 RELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHV 68

Query:    64 GQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL 123
             G+SKA+VA+++VL+F P+ +I A+H ++ +P +NVEFF+QF +V+N LDN  AR HVNR+
Sbjct:    69 GRSKAQVAKESVLQFYPKANIIAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRM 128

Query:   124 CLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVW 183
             CLAADVPL+ESGT G+LGQVT   KG TECYEC PKP  +T+P CTI +TPS+ +HCIVW
Sbjct:   129 CLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGCTIRNTPSEPIHCIVW 188

Query:   184 AKDLLFAKLFGDKNQENDLNV-RXXXXXXXXXXE-DVFVRRKDEDID-------QYGRRI 234
             AK  LF +LFG+++ + +++  R          E +   R  +ED D       ++ +  
Sbjct:   189 AK-YLFNQLFGEEDADQEVSPDRADPEASWEPMEAEARARASNEDGDIKRISTKEWAKST 247

Query:   235 -YDHV------FGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDT 287
              YD V      F  +I    + ++ W+ R  P P+  A+V  +   E N +  +N     
Sbjct:   248 GYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQG-EETNASDQQN----- 301

Query:   288 SSVSAMASLGLKNPQ--D--TWTLLESSRIFLEALKLFFAKREKEIG-NLSFDKDDQLAV 342
                     LGLK+ Q  D  ++  L S  I  E L++  A  EK  G  L +DKDD  A+
Sbjct:   302 -----EPQLGLKDQQVLDVKSYACLFSKSI--ETLRVHLA--EKGDGAELIWDKDDPSAM 352

Query:   343 EFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDK 402
             +FVT+AAN+R   F +++ S F+ K +AGNI+ A+ATTNA+IAGLIV+E +K+L    D+
Sbjct:   353 DFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQ 412

Query:   403 YR 404
              R
Sbjct:   413 CR 414

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0019948 "SUMO activating enzyme activity" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

UNIPROTKB|Q28GH3 uba2 "SUMO-activating enzyme subunit 2" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
 Identities = 187/415 (45%), Positives = 275/415 (66%)

Query:     8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
             EA+  +++L+VGAGGIGCELLK L L+GF ++ +ID+DTI+VSNLNRQFLF++ HVG+SK
Sbjct:    13 EAVSTSRLLVVGAGGIGCELLKNLVLTGFINLDVIDLDTIDVSNLNRQFLFQKKHVGRSK 72

Query:    68 AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127
             A+VA+++VL+F P+ +ITA+H ++ +P +NVEFFKQF +V+N LDN  AR HVNR+CLAA
Sbjct:    73 AQVAKESVLQFCPEANITAYHDSIMNPDYNVEFFKQFTMVMNALDNNAARNHVNRMCLAA 132

Query:   128 DVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDL 187
              +PL+ESGT G+LGQVTV  KG TECYECQPKP  KT+P CTI +TPS+ +HCIVWAK  
Sbjct:   133 GIPLIESGTAGYLGQVTVVKKGVTECYECQPKPTQKTFPGCTIRNTPSEPIHCIVWAK-Y 191

Query:   188 LFAKLFG--DKNQE--NDLNVRXXXXXXXXXXEDVFVRRKDEDID-----QYGR------ 232
             LF +LFG  D +QE   D+             E       D DI      Q+ +      
Sbjct:   192 LFNQLFGEEDADQEVAPDIADPEAAWDPTQAAERANASNVDGDIKRVSTKQWAKSTGYDP 251

Query:   233 -RIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVS 291
              ++++ +F  +I+   + +  W+ R  P P+  + +        N    +NC  +T + S
Sbjct:   252 IKLFNKLFRDDIKYLLTMDRLWRKRKPPVPLEWSSL-------HN---KENCS-ETQNES 300

Query:   292 AMASLGLKNPQDTWTLLESSRIFLEALKLFFAK-REKEIG-NLSFDKDDQLAVEFVTAAA 349
             ++   GLK+ Q    +   +++F ++++    + REK  G  L +DKDD  A++FVTAAA
Sbjct:   301 SLQ--GLKD-QKVLDVTSCAQLFSKSVETLREQLREKGNGAELVWDKDDPPAMDFVTAAA 357

Query:   350 NIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYR 404
             N+R   F +++ S F+ K +AGNI+ A+ATTNA+I+GLIV+E +K+L  +T++ R
Sbjct:   358 NLRMHIFSMNMKSRFDVKSMAGNIIPAIATTNAVISGLIVLEGLKILSGNTEQCR 412

GO:0016925 "protein sumoylation" evidence=ISS

GO:0019948 "SUMO activating enzyme activity" evidence=ISS

ZFIN|ZDB-GENE-040426-2681 uba2 "ubiquitin-like modifier activating enzyme 2" [Danio rerio (taxid:7955)]

 Score = 850 (304.3 bits), Expect = 6.2e-85, P = 6.2e-85
 Identities = 181/415 (43%), Positives = 277/415 (66%)

Query:     5 RQL-EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV 63
             +QL +++   +VL+VGAGGIGCELLK L L+GF++I +ID+DTI+VSNLNRQFLF++ HV
Sbjct:    10 KQLADSLSSCRVLVVGAGGIGCELLKNLVLTGFKNIEVIDLDTIDVSNLNRQFLFQKKHV 69

Query:    64 GQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL 123
             G+SKA+VA+++VL+F P  +ITA+H ++ +P +NVEFF+ F +V+N LDN  AR HVNR+
Sbjct:    70 GKSKAQVAKESVLRFCPSANITAYHDSIMNPDYNVEFFRNFQLVMNALDNRAARNHVNRM 129

Query:   124 CLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVW 183
             CLAAD+PL+ESGT G+LGQVTV  KG+TECYECQPKP  KT+P CTI +TPS+ +HCIVW
Sbjct:   130 CLAADIPLIESGTAGYLGQVTVIKKGQTECYECQPKPTQKTFPGCTIRNTPSEPIHCIVW 189

Query:   184 AKDLLFAKLFGDKNQENDLNVRXXXXXXXXXXEDVFVRR----KDEDIDQYGRRIYDHVF 239
             AK  LF +LFG+++ + +++             D   R     +D DI +   + +    
Sbjct:   190 AK-YLFNQLFGEEDADQEVSPDTADPEAAWNPADAAARATASDQDGDIKRVSTKEWARST 248

Query:   240 GYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCV-VDTSSVSAMASL-- 296
             GY+  +   N+ +  ++  P  ++  D+M     ++     K  + ++   ++ +A    
Sbjct:   249 GYD-PIKLFNKVSALSQTSPY-LFKDDIMYLLTMDKLWKKRKAPLPLEWEEINQLAGSQE 306

Query:   297 -----GLKNPQDTWTLLESSRIFLEALKLFFAK-REKEIG-NLSFDKDDQLAVEFVTAAA 349
                  GLK+ Q    +   +++F  +++   ++ +EK  G  L +DKDD  A++FVTAA+
Sbjct:   307 QVIGSGLKD-QQVLGVQGYAQLFQHSVETLRSQLKEKGDGAELVWDKDDPPAMDFVTAAS 365

Query:   350 NIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYR 404
             N+R   F +++ S F+ K +AGNI+ A+ATTNA+IAGLIV+EA+K+L  D ++ R
Sbjct:   366 NLRMNVFSMNMKSRFDVKSMAGNIIPAIATTNAVIAGLIVLEALKILNSDFEQCR 420

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0008641 "small protein activating enzyme activity" evidence=IEA

GO:0019948 "SUMO activating enzyme activity" evidence=ISS

GO:0016925 "protein sumoylation" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

UNIPROTKB|Q7ZY60 uba2-b "SUMO-activating enzyme subunit 2-B" [Xenopus laevis (taxid:8355)]

 Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
 Identities = 188/416 (45%), Positives = 273/416 (65%)

Query:     8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
             EA+  +++L+VGAGGIGCELLK L L+GF ++ +ID+DTI+VSNLNRQFLF++ HVG+SK
Sbjct:    13 EAVSASRLLVVGAGGIGCELLKNLVLTGFTNLDVIDLDTIDVSNLNRQFLFQKKHVGRSK 72

Query:    68 AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127
             A+VA+++VL+F P  SITA+H ++ +P +NVEFFKQF + +N LDN  AR HVNR+CLAA
Sbjct:    73 AQVAKESVLQFCPDASITAYHDSIMNPDYNVEFFKQFTMAMNALDNNAARNHVNRMCLAA 132

Query:   128 DVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDL 187
              +PL+ESGT G+LGQV+V  KG TECYECQPKP  KT+P CTI +TPS+ +HCIVWAK  
Sbjct:   133 GIPLIESGTAGYLGQVSVIKKGVTECYECQPKPTQKTFPGCTIRNTPSEPIHCIVWAK-Y 191

Query:   188 LFAKLFG--DKNQE--NDLNVRXXXXXXXXXXEDVFVRRKDEDID-----QYGR------ 232
             LF +LFG  D +QE   D+             E       D DI      Q+ +      
Sbjct:   192 LFNQLFGEEDADQEVAPDIADPEAAWDPTKAAERANASNVDGDIKRVSTKQWAKSTGYDP 251

Query:   233 -RIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVM-PENLTEQNGNVAKNCVVDTSSV 290
              ++++ +F  +I+   + +  W+ R  P P+  A +   EN +E         + + SS+
Sbjct:   252 IKLFNKLFRDDIKYLLTMDRLWRKRKPPIPLEWASLHNKENCSE---------IQNESSL 302

Query:   291 SAMASLGLKNPQDTWTLLESSRIFLEALKLFFAK-REKEIG-NLSFDKDDQLAVEFVTAA 348
                  LGLK+ Q    +   +++F ++++    + REK  G  L +DKDD  A++FVTAA
Sbjct:   303 -----LGLKD-QKVLNVASYAQLFSKSVETLREQLREKGDGAELVWDKDDVPAMDFVTAA 356

Query:   349 ANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYR 404
             AN+R   F +++ S F+ K +AGNI+ A+ATTNA+I+GLIV+E +K+L  +T++ R
Sbjct:   357 ANLRMHIFSMNMKSKFDVKSMAGNIIPAIATTNAVISGLIVLEGLKILSGNTEQCR 412

GO:0016925 "protein sumoylation" evidence=ISS

GO:0019948 "SUMO activating enzyme activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	410
cd01489	312	cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E	1e-139
cd01484	234	cd01484, E1-2_like, Ubiquitin activating enzyme (E	6e-76
cd01488	291	cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1	2e-67
cd01490	435	cd01490, Ube1_repeat2, Ubiquitin activating enzyme	2e-60
TIGR01408	1008	TIGR01408, Ube1, ubiquitin-activating enzyme E1	1e-58
pfam00899	134	pfam00899, ThiF, ThiF family	1e-47
COG0476	254	COG0476, ThiF, Dinucleotide-utilizing enzymes invo	6e-44
cd00757	228	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA	4e-43
cd01483	143	cd01483, E1_enzyme_family, Superfamily of activati	5e-37
cd01489	312	cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E	1e-34
PRK05690	245	PRK05690, PRK05690, molybdopterin biosynthesis pro	2e-32
TIGR02355	240	TIGR02355, moeB, molybdopterin synthase sulfurylas	6e-30
TIGR02356	202	TIGR02356, adenyl_thiF, thiazole biosynthesis aden	4e-29
PRK08762	376	PRK08762, PRK08762, molybdopterin biosynthesis pro	5e-26
PRK07878	392	PRK07878, PRK07878, molybdopterin biosynthesis-lik	1e-25
pfam02134	66	pfam02134, UBACT, Repeat in ubiquitin-activating (	2e-25
PRK05600	370	PRK05600, PRK05600, thiamine biosynthesis protein	1e-23
pfam10585	44	pfam10585, UBA_e1_thiolCys, Ubiquitin-activating e	1e-22
cd00755	231	cd00755, YgdL_like, Family of activating enzymes (	4e-21
PRK05597	355	PRK05597, PRK05597, molybdopterin biosynthesis pro	2e-20
COG1179	263	COG1179, COG1179, Dinucleotide-utilizing enzymes i	3e-20
cd01492	197	cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E	6e-18
PRK07411	390	PRK07411, PRK07411, hypothetical protein; Validate	6e-18
PRK08644	212	PRK08644, PRK08644, thiamine biosynthesis protein	2e-17
PRK08328	231	PRK08328, PRK08328, hypothetical protein; Provisio	8e-17
cd01490	435	cd01490, Ube1_repeat2, Ubiquitin activating enzyme	3e-15
cd01485	198	cd01485, E1-1_like, Ubiquitin activating enzyme (E	3e-14
cd01487	174	cd01487, E1_ThiF_like, E1_ThiF_like	1e-13
PRK12475	338	PRK12475, PRK12475, thiamine/molybdopterin biosynt	1e-13
PRK08223	287	PRK08223, PRK08223, hypothetical protein; Validate	2e-13
PRK15116	268	PRK15116, PRK15116, sulfur acceptor protein CsdL;	7e-12
PRK07688	339	PRK07688, PRK07688, thiamine/molybdopterin biosynt	7e-12
cd01484	234	cd01484, E1-2_like, Ubiquitin activating enzyme (E	1e-11
TIGR02354	200	TIGR02354, thiF_fam2, thiamine biosynthesis protei	2e-11
cd01491	286	cd01491, Ube1_repeat1, Ubiquitin activating enzyme	1e-10
PRK14851	679	PRK14851, PRK14851, hypothetical protein; Provisio	4e-10
cd01493	425	cd01493, APPBP1_RUB, Ubiquitin activating enzyme (	8e-10
PRK14852	989	PRK14852, PRK14852, hypothetical protein; Provisio	3e-09
cd01488	291	cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1	1e-08
TIGR01408	1008	TIGR01408, Ube1, ubiquitin-activating enzyme E1	1e-07
TIGR01381	664	TIGR01381, E1_like_apg7, E1-like protein-activatin	3e-07
cd01486	307	cd01486, Apg7, Apg7 is an E1-like protein, that ac	4e-05
TIGR03736	244	TIGR03736, PRTRC_ThiF, PRTRC system ThiF family pr	1e-04
pfam01488	133	pfam01488, Shikimate_DH, Shikimate / quinate 5-deh	0.002

>gnl|CDD|238766 cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E1) subunit UBA2

 Score =  398 bits (1025), Expect = e-139
 Identities = 144/254 (56%), Positives = 173/254 (68%), Gaps = 44/254 (17%)

Query: 14  KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARD 73
           KVL+VGAGGIGCELLK L L+GF +IHIID+DTI++SNLNRQFLFR+ HVG+SKA+VA++
Sbjct: 1   KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKE 60

Query: 74  AVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVE 133
           AVL F P + I A+HAN+KDP FNVEFFKQF++V N LDNL ARRHVN++CLAADVPL+E
Sbjct: 61  AVLSFNPNVKIVAYHANIKDPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIE 120

Query: 134 SGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLF 193
           SGTTGFLGQV V  KGKTECYECQPK  PKT+PVCTI STPS+ +HCIVWAK L F    
Sbjct: 121 SGTTGFLGQVQVIKKGKTECYECQPKETPKTFPVCTIRSTPSQPIHCIVWAKSLFF---- 176

Query: 194 GDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASSNEETW 253
                                                   +++ VF  +IE   S EE W
Sbjct: 177 ----------------------------------------LFNKVFKDDIERLLSMEELW 196

Query: 254 KNRNRPKPIYSADV 267
           K R  P P+   ++
Sbjct: 197 KTRKPPVPLSWKEL 210

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Length = 312

>gnl|CDD|238761 cd01484, E1-2_like, Ubiquitin activating enzyme (E1), repeat 2-like

 Score =  235 bits (601), Expect = 6e-76
 Identities = 93/177 (52%), Positives = 119/177 (67%), Gaps = 1/177 (0%)

Query: 14  KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARD 73
           KVL+VGAGGIGCELLK LAL GF  IH+IDMDTI+VSNLNRQFLFR   +G+ K++VA +
Sbjct: 1   KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAE 60

Query: 74  AVLKFRPQMSITAHHANVKDPK-FNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLV 132
           AV    P   +  +   V   + FN  FF+QF++++N LDN+ ARR+VN + +   VPL+
Sbjct: 61  AVNDRNPNCKVVPYQNKVGPEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLI 120

Query: 133 ESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLF 189
           ESGT GF G   V + G TEC EC   P  K +P+CTI S P    HCI WA+ L +
Sbjct: 121 ESGTEGFKGNAQVILPGMTECIECTLYPPQKNFPMCTIASMPRLPEHCIEWARMLQW 177

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologous to the second repeat of Ub-E1. Length = 234

>gnl|CDD|238765 cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1) subunit UBA3

 Score =  215 bits (550), Expect = 2e-67
 Identities = 90/198 (45%), Positives = 128/198 (64%), Gaps = 12/198 (6%)

Query: 14  KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARD 73
           K+L++GAGG+GCELLK LALSGF++IH+IDMDTI+VSNLNRQFLFR+  +G+ KA+VA  
Sbjct: 1   KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAK 60

Query: 74  AVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVN----RLCLAAD- 128
            V    P +++T H   ++D   + EF++QFN+++ GLD+++ARR +N     L L  D 
Sbjct: 61  FVNDRVPGVNVTPHFGKIQD--KDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDP 118

Query: 129 ---VPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPK--TYPVCTITSTPSKFVHCIVW 183
              +PL++ GT GF G   V + G T C EC     P   T+P+CTI +TP    HCI +
Sbjct: 119 ESIIPLIDGGTEGFKGHARVILPGITACIECSLDLFPPQVTFPLCTIANTPRLPEHCIEY 178

Query: 184 AKDLLFAKLFGDKNQEND 201
           A  + + K F     + D
Sbjct: 179 ASLIQWPKEFPFVPLDGD 196

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Length = 291

>gnl|CDD|238767 cd01490, Ube1_repeat2, Ubiquitin activating enzyme (E1), repeat 2

 Score =  201 bits (514), Expect = 2e-60
 Identities = 87/197 (44%), Positives = 113/197 (57%), Gaps = 13/197 (6%)

Query: 14  KVLMVGAGGIGCELLKTLALSGFQ-----DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKA 68
           KV +VGAG IGCELLK  AL G       +I + DMD IE SNLNRQFLFR   VG+ K+
Sbjct: 1   KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKS 60

Query: 69  KVARDAVLKFRPQMSITAHHANVKDPK----FNVEFFKQFNVVLNGLDNLDARRHVNRLC 124
           +VA  AV    P + ITA    V  P+    FN EF+++ + V N LDN+DAR +V+R C
Sbjct: 61  EVAAAAVKAMNPDLKITALQNRV-GPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRC 119

Query: 125 LAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWA 184
           +    PL+ESGT G  G   V +   TE Y     P  K+ P+CT+ + P+   H I WA
Sbjct: 120 VYYRKPLLESGTLGTKGNTQVVIPHLTESYSSSRDPPEKSIPLCTLKNFPNAIEHTIQWA 179

Query: 185 KDL---LFAKLFGDKNQ 198
           +D    LF +   + NQ
Sbjct: 180 RDEFEGLFKQPPENVNQ 196

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. Length = 435

>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1

 Score =  205 bits (524), Expect = 1e-58
 Identities = 140/471 (29%), Positives = 201/471 (42%), Gaps = 97/471 (20%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQ-----DIHIIDMDTIEVSNLNRQFLFRQSH 62
           + ++   + +VG G IGCE+LK  AL G        I + D D IE SNLNRQFLFR  H
Sbjct: 415 QKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHH 474

Query: 63  VGQSKAKVARDAVLKFRPQMSITAHHANV---KDPKFNVEFFKQFNVVLNGLDNLDARRH 119
           +G+ K+  A DA LK  PQ+ I AH   V    +  FN EF+++ +VV+N LDN++ARR+
Sbjct: 475 IGKPKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRY 534

Query: 120 VNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVH 179
           V+  CLA   PL+ESGT G  G   V V   TE Y     P  K  P CT+ S P+   H
Sbjct: 535 VDSRCLAFLKPLLESGTLGTKGNTQVVVPHLTESYGSSRDPPEKEIPFCTLKSFPAAIEH 594

Query: 180 CIVWAKDLLFAKLFGDKNQENDLNVRS-------SDASSSAHAEDV-------FVRRKDE 225
            I WA+D  F  LF  K    +  + S            S H+ +          + K  
Sbjct: 595 TIQWARD-KFEGLFSHKPSLVNKYLSSPSSAEEVLQKIQSGHSREGLEQIIKLLSKEKPR 653

Query: 226 DIDQ---YGRRIYDHVFGYNIE----------VASSNEETWKNRNR-PKPIYSADVMPEN 271
           +  Q   + R  ++  F                 S+    W +  R P P+      P +
Sbjct: 654 NFSQCVEWARLKFEKYFNNKALQLLHCFPLDIRTSTGSPFWSSPKRPPSPLKFDLNEPLH 713

Query: 272 LTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLF----FAKRE- 326
           L         + +   + + A    G+   +    L  S+   L  L       F  R  
Sbjct: 714 L---------SFIQAAAKLYAT-VYGIPFAE--EDL--SADALLNILSEVKIPEFKPRSN 759

Query: 327 --------------------KEIGNL-------------------SFDKDDQLA--VEFV 345
                                 I  L                   SF+KDD     ++F+
Sbjct: 760 KKIQTDETARKPDTAPEDDRNAIFQLEKAILSNEATKSDFRMAPLSFEKDDDHNGHIDFI 819

Query: 346 TAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVL 396
           TAA+N+RA ++ I     F+ K IAG I+ A+AT+ A ++GL+ +E IKV 
Sbjct: 820 TAASNLRAKNYSIEPADRFKTKFIAGKIIPAIATSTATVSGLVCLELIKVT 870

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. Length = 1008

>gnl|CDD|216180 pfam00899, ThiF, ThiF family

 Score =  158 bits (403), Expect = 1e-47
 Identities = 52/133 (39%), Positives = 84/133 (63%), Gaps = 1/133 (0%)

Query: 13  AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVAR 72
           ++VL+VGAGG+G    + LA +G   + ++D DT+E+SNLNRQ LF +S +G+ KA+VA+
Sbjct: 2   SRVLVVGAGGLGSPAAEYLARAGVGKLTLVDFDTVELSNLNRQILFTESDIGKPKAEVAK 61

Query: 73  DAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLV 132
           + +    P + + A+   +  P+   E  K  ++V++ LDN  AR  +N  C+   +PL+
Sbjct: 62  ERLRAINPDVEVEAYPERL-TPENLEELLKGVDLVVDALDNFAARYLLNDACVKRGIPLI 120

Query: 133 ESGTTGFLGQVTV 145
            +G  GF GQVTV
Sbjct: 121 SAGALGFDGQVTV 133

This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family. Length = 134

>gnl|CDD|223552 COG0476, ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]

 Score =  153 bits (388), Expect = 6e-44
 Identities = 69/172 (40%), Positives = 97/172 (56%), Gaps = 2/172 (1%)

Query: 4   ERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV 63
               + +K ++VL+VGAGG+G    K LAL+G   + I+D DT+E+SNL RQFLF ++ V
Sbjct: 22  GEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADV 81

Query: 64  GQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL 123
           G+ KA+VA  A+ K  P + + A+   + D +   E   QF+VVL+  DN + R  +N  
Sbjct: 82  GKPKAEVAAKALRKLNPLVEVVAYLERL-DEENAEELIAQFDVVLDCTDNFETRYLINDA 140

Query: 124 CLAADVPLVESGTTGFLGQVTVHVKG-KTECYECQPKPAPKTYPVCTITSTP 174
           C+   +PLV  G  GF GQVTV + G KT CY C     P    V T     
Sbjct: 141 CVKLGIPLVHGGAIGFEGQVTVIIPGDKTPCYRCLFPEKPPPGLVPTSCDEA 192

Length = 254

>gnl|CDD|238386 cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA

 Score =  150 bits (381), Expect = 4e-43
 Identities = 61/168 (36%), Positives = 92/168 (54%), Gaps = 2/168 (1%)

Query: 2   VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQS 61
           + E   E +K A+VL+VGAGG+G    + LA +G   + ++D D +E+SNL RQ L  ++
Sbjct: 11  IGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEA 70

Query: 62  HVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVN 121
            VGQ KA+ A + +    P + I A++  + D +   E    +++VL+  DN   R  +N
Sbjct: 71  DVGQPKAEAAAERLRAINPDVEIEAYNERL-DAENAEELIAGYDLVLDCTDNFATRYLIN 129

Query: 122 RLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQ-PKPAPKTYPVC 168
             C+    PLV     GF GQVTV + G+  CY C  P+P P   P C
Sbjct: 130 DACVKLGKPLVSGAVLGFEGQVTVFIPGEGPCYRCLFPEPPPPGVPSC 177

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). . Length = 228

>gnl|CDD|238760 cd01483, E1_enzyme_family, Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

 Score =  131 bits (331), Expect = 5e-37
 Identities = 50/133 (37%), Positives = 82/133 (61%), Gaps = 1/133 (0%)

Query: 14  KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARD 73
           +VL+VG GG+G E+   LA SG   I +ID DT+E+SNLNRQFL RQ+ +G+ KA+VA  
Sbjct: 1   RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAAR 60

Query: 74  AVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVE 133
            + +  P +++TA    + +     +F    ++V++ +DN+  RR +NR C    +P+++
Sbjct: 61  RLNELNPGVNVTAVPEGISEDN-LDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVID 119

Query: 134 SGTTGFLGQVTVH 146
           +G  G  G + V 
Sbjct: 120 AGGLGLGGDIQVI 132

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. Length = 143

>gnl|CDD|238766 cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E1) subunit UBA2

 Score =  130 bits (328), Expect = 1e-34
 Identities = 45/73 (61%), Positives = 59/73 (80%)

Query: 332 LSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIE 391
           L+FDKDDQ A++FV AAAN+R+  FGI + S F+ K +AGNI+ A+ATTNAIIAGLIV+E
Sbjct: 210 LTFDKDDQDALDFVAAAANLRSHVFGIPMKSRFDIKQMAGNIIPAIATTNAIIAGLIVLE 269

Query: 392 AIKVLLKDTDKYR 404
           A+KVL  D ++ R
Sbjct: 270 ALKVLSGDKEQCR 282

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Length = 312

>gnl|CDD|180204 PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional

 Score =  121 bits (307), Expect = 2e-32
 Identities = 57/151 (37%), Positives = 83/151 (54%), Gaps = 4/151 (2%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           E +K A+VL+VG GG+GC   + LA +G   + ++D DT+ +SNL RQ L   + +GQ K
Sbjct: 28  EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPK 87

Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127
            + AR A+ +  P ++I   +A + D +         ++VL+  DN+  R  +NR C AA
Sbjct: 88  VESARAALARINPHIAIETINARLDDDELA-ALIAGHDLVLDCTDNVATRNQLNRACFAA 146

Query: 128 DVPLVESGTTG-FLGQVTVHVKGKTE-CYEC 156
             PLV SG      GQVTV      E CY C
Sbjct: 147 KKPLV-SGAAIRMEGQVTVFTYQDDEPCYRC 176

Length = 245

>gnl|CDD|131408 TIGR02355, moeB, molybdopterin synthase sulfurylase MoeB

 Score =  115 bits (290), Expect = 6e-30
 Identities = 53/150 (35%), Positives = 88/150 (58%), Gaps = 2/150 (1%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           EA+K ++VL+VG GG+GC   + LA +G  ++ ++D DT+ +SNL RQ L   +++GQ K
Sbjct: 20  EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPK 79

Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127
            + A+DA+ +  P ++I   +A + D +       + ++V++  DN++ R  +NR C AA
Sbjct: 80  VESAKDALTQINPHIAINPINAKLDDAELA-ALIAEHDIVVDCTDNVEVRNQLNRQCFAA 138

Query: 128 DVPLVESGTTGFLGQVTVHV-KGKTECYEC 156
            VPLV        GQV+V   +    CY C
Sbjct: 139 KVPLVSGAAIRMEGQVSVFTYQDGEPCYRC 168

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899) [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin]. Length = 240

>gnl|CDD|162820 TIGR02356, adenyl_thiF, thiazole biosynthesis adenylyltransferase ThiF, E

 Score =  112 bits (281), Expect = 4e-29
 Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 2/171 (1%)

Query: 2   VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQS 61
           + E   + +  + VL++GAGG+G      LA +G   I I+D D +++SNL RQ LF + 
Sbjct: 11  IGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEE 70

Query: 62  HVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVN 121
            VG+ K +VA   + +    + +TA    V   +         ++VL+  DN   R  +N
Sbjct: 71  DVGRPKVEVAAQRLRELNSDIQVTALKERV-TAENLELLINNVDLVLDCTDNFATRYLIN 129

Query: 122 RLCLAADVPLVESGTTGFLGQV-TVHVKGKTECYECQPKPAPKTYPVCTIT 171
             C+A   PL+ +   GF GQ+      G+  C  C       T P C   
Sbjct: 130 DACVALGTPLISAAVVGFGGQLMVFDPGGEGPCLRCLFPDIADTGPSCATA 180

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 202

>gnl|CDD|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB; Validated

 Score =  107 bits (270), Expect = 5e-26
 Identities = 56/164 (34%), Positives = 78/164 (47%), Gaps = 9/164 (5%)

Query: 13  AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVAR 72
           A+VL++GAGG+G      LA +G   + I+D D ++ SNL RQ L  +  VGQ K   A 
Sbjct: 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAA 195

Query: 73  DAVLKFRPQMSITAHHANVKDPKFNVE-FFKQFNVVLNGLDNLDARRHVNRLCLAADVPL 131
             +    P + + A    V     NVE   +  +VV++G DN   R  +N  C+    PL
Sbjct: 196 QRLAALNPDVQVEAVQERVTSD--NVEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPL 253

Query: 132 VESGTTGFLGQVTVHVKGKTE----CYECQ-PKPAPKTY-PVCT 169
           V      F GQV+V   G+      CY C  P+P P    P C 
Sbjct: 254 VYGAVFRFEGQVSVFDAGRQRGQAPCYRCLFPEPPPPELAPSCA 297

Length = 376

>gnl|CDD|181156 PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated

 Score =  106 bits (267), Expect = 1e-25
 Identities = 57/158 (36%), Positives = 87/158 (55%), Gaps = 6/158 (3%)

Query: 10  IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAK 69
           +K A+VL++GAGG+G   L  LA +G   + I++ D ++ SNL RQ +  QS VG+SKA+
Sbjct: 40  LKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQ 99

Query: 70  VARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADV 129
            ARD++++  P +++  H   + DP   VE F Q++++L+G DN   R  VN   + A  
Sbjct: 100 SARDSIVEINPLVNVRLHEFRL-DPSNAVELFSQYDLILDGTDNFATRYLVNDAAVLAGK 158

Query: 130 PLVESGTTGFLGQVTV----HVKGKTECYEC-QPKPAP 162
           P V      F GQ +V       G    Y    P+P P
Sbjct: 159 PYVWGSIYRFEGQASVFWEDAPDGLGLNYRDLYPEPPP 196

Length = 392

>gnl|CDD|202124 pfam02134, UBACT, Repeat in ubiquitin-activating (UBA) protein

 Score = 97.6 bits (244), Expect = 2e-25
 Identities = 36/64 (56%), Positives = 50/64 (78%)

Query: 333 SFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEA 392
            FDKDD   ++FV AAAN+RA ++GI     F+ KGIAGNI+ A+ATTNAI+AG++V+E 
Sbjct: 1   EFDKDDDDHLDFVYAAANLRAQNYGIPPADRFDVKGIAGNIIPAIATTNAIVAGIVVLEL 60

Query: 393 IKVL 396
           +K+L
Sbjct: 61  LKIL 64

Length = 66

>gnl|CDD|235528 PRK05600, PRK05600, thiamine biosynthesis protein ThiF; Validated

 Score =  101 bits (252), Expect = 1e-23
 Identities = 48/147 (32%), Positives = 79/147 (53%), Gaps = 1/147 (0%)

Query: 6   QLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQ 65
           Q E +  A+VL++GAGG+GC  +++LA +G   I +ID DT++VSN++RQ LF  S VG+
Sbjct: 35  QQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGR 94

Query: 66  SKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL 125
            K +VA + + + +P + + A    +   +  VE     ++VL+G D+   +  V     
Sbjct: 95  PKVEVAAERLKEIQPDIRVNALRERL-TAENAVELLNGVDLVLDGSDSFATKFLVADAAE 153

Query: 126 AADVPLVESGTTGFLGQVTVHVKGKTE 152
               PLV      F G++ V   G   
Sbjct: 154 ITGTPLVWGTVLRFHGELAVFNSGPDH 180

Length = 370

>gnl|CDD|192635 pfam10585, UBA_e1_thiolCys, Ubiquitin-activating enzyme active site

 Score = 89.5 bits (223), Expect = 1e-22
 Identities = 27/45 (60%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 150 KTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFG 194
            TECYEC P P  K+ PVCT+ S PS   HCI WA+D LF  LFG
Sbjct: 1   VTECYECSPDPPEKSIPVCTLRSFPSTPEHCIEWARD-LFEGLFG 44

Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2). This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP. Length = 44

>gnl|CDD|238384 cd00755, YgdL_like, Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

 Score = 90.7 bits (226), Expect = 4e-21
 Identities = 37/132 (28%), Positives = 63/132 (47%)

Query: 7   LEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQS 66
           LE ++ A V +VG GG+G    + LA SG   + +ID D + VSNLNRQ     S VG+ 
Sbjct: 6   LEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKP 65

Query: 67  KAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA 126
           K +V  + +    P+  + A    +             + V++ +D++ A+  +   C  
Sbjct: 66  KVEVMAERIRDINPECEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRK 125

Query: 127 ADVPLVESGTTG 138
             +P++ S   G
Sbjct: 126 RKIPVISSMGAG 137

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. Length = 231

>gnl|CDD|235526 PRK05597, PRK05597, molybdopterin biosynthesis protein MoeB; Validated

 Score = 91.5 bits (227), Expect = 2e-20
 Identities = 57/166 (34%), Positives = 89/166 (53%), Gaps = 7/166 (4%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           +++  AKV ++GAGG+G   L  LA +G   I IID DT+++SNL+RQ +   + VGQ K
Sbjct: 24  QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPK 83

Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127
           A+ AR+A+L   P + +T     +      ++  +  +V+L+G DN D  RH+     A 
Sbjct: 84  AESAREAMLALNPDVKVTVSVRRL-TWSNALDELRDADVILDGSDNFDT-RHLASWAAAR 141

Query: 128 -DVPLVESGTTGFLGQVTVHVKGKTECYE---CQPKPAPKTYPVCT 169
             +P V +   GF  Q++V   G    YE     P P P + P C+
Sbjct: 142 LGIPHVWASILGFDAQLSVFHAGHGPIYEDLFPTP-PPPGSVPSCS 186

Length = 355

>gnl|CDD|224100 COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

 Score = 89.3 bits (222), Expect = 3e-20
 Identities = 40/138 (28%), Positives = 72/138 (52%)

Query: 1   MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
           +  E  LE +K A V +VG GG+G   ++ LA SG   I +IDMD + V+N NRQ     
Sbjct: 19  LYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALL 78

Query: 61  SHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHV 120
             +G+ K +V ++ + +  P+  +TA +  + +        K F+ V++ +D++ A+  +
Sbjct: 79  GDIGKPKVEVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVAL 138

Query: 121 NRLCLAADVPLVESGTTG 138
              C    +P++ S   G
Sbjct: 139 IAYCRRNKIPVISSMGAG 156

Length = 263

>gnl|CDD|238769 cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E1) subunit Aos1

 Score = 81.2 bits (201), Expect = 6e-18
 Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 4/137 (2%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           + ++ A++L++G  G+G E+ K L LSG   + I+D  T+   +L  QFL     +GQ++
Sbjct: 17  KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNR 76

Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFN-VVLNGLDNLDARRHVNRLCLA 126
           A+ + + +    P++ ++    ++   +   EFF QF+ VV   L   +  + +N LC  
Sbjct: 77  AEASLERLRALNPRVKVSVDTDDIS--EKPEEFFSQFDVVVATELSRAELVK-INELCRK 133

Query: 127 ADVPLVESGTTGFLGQV 143
             V    +G  G  G V
Sbjct: 134 LGVKFYATGVHGLFGFV 150

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. Length = 197

>gnl|CDD|180967 PRK07411, PRK07411, hypothetical protein; Validated

 Score = 84.4 bits (209), Expect = 6e-18
 Identities = 49/154 (31%), Positives = 75/154 (48%), Gaps = 2/154 (1%)

Query: 10  IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAK 69
           +K A VL +G GG+G  LL  LA +G   I I+D D ++ SNL RQ +   S VG+ K +
Sbjct: 36  LKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIE 95

Query: 70  VARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADV 129
            A++ +L+  P   +  +   +      ++    ++VV++G DN   R  VN  C+  + 
Sbjct: 96  SAKNRILEINPYCQVDLYETRLSSEN-ALDILAPYDVVVDGTDNFPTRYLVNDACVLLNK 154

Query: 130 PLVESGTTGFLGQVTVHVKGKTECYEC-QPKPAP 162
           P V      F GQ TV        Y    P+P P
Sbjct: 155 PNVYGSIFRFEGQATVFNYEGGPNYRDLYPEPPP 188

Length = 390

>gnl|CDD|236320 PRK08644, PRK08644, thiamine biosynthesis protein ThiF; Provisional

 Score = 79.9 bits (198), Expect = 2e-17
 Identities = 48/139 (34%), Positives = 74/139 (53%), Gaps = 6/139 (4%)

Query: 4   ERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV 63
            + LE +K AKV + GAGG+G  +   LA SG  ++ ++D D +E SNLNRQ  F  S +
Sbjct: 20  PKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQI 78

Query: 64  GQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNV-EFFKQFNVVLNGLDNLDARRH-VN 121
           G  K +  ++ +L+  P + I AH  N K  + N+ E FK  ++V+   DN + +   V 
Sbjct: 79  GMPKVEALKENLLEINPFVEIEAH--NEKIDEDNIEELFKDCDIVVEAFDNAETKAMLVE 136

Query: 122 RLCLAADVPLV-ESGTTGF 139
            +       LV  SG  G+
Sbjct: 137 TVLEHPGKKLVAASGMAGY 155

Length = 212

>gnl|CDD|169382 PRK08328, PRK08328, hypothetical protein; Provisional

 Score = 78.7 bits (194), Expect = 8e-17
 Identities = 60/191 (31%), Positives = 91/191 (47%), Gaps = 20/191 (10%)

Query: 1   MVSERQL---------------EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45
           M+SER+L               E +K AKV +VG GG+G  +   LA +G   I +ID  
Sbjct: 1   MLSERELERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60

Query: 46  TIEVSNLNRQFLFRQSHVGQ-SKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQF 104
           T E+SNLNRQ L  +  +G+  K   A+  + +F   + I      + +   + E  K  
Sbjct: 61  TPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVGRLSEENID-EVLKGV 119

Query: 105 NVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECY-ECQPKPAPK 163
           +V+++ LDN + R  ++       +PLV     G  GQVT  V GKT+   E  PK   K
Sbjct: 120 DVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQVTTIVPGKTKRLREIFPKVKKK 179

Query: 164 T--YPVCTITS 172
              +P+   T+
Sbjct: 180 KGKFPILGATA 190

Length = 231

>gnl|CDD|238767 cd01490, Ube1_repeat2, Ubiquitin activating enzyme (E1), repeat 2

 Score = 76.6 bits (189), Expect = 3e-15
 Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 4/85 (4%)

Query: 330 GNLSFDKDDQ--LAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGL 387
           G   F+KDD     ++F+TAA+N+RA ++ I      + K IAG I+ A+ATT A + GL
Sbjct: 273 GIPGFEKDDDTNFHMDFITAASNLRARNYSIPPADRHKTKRIAGKIIPAIATTTAAVTGL 332

Query: 388 IVIEAIKVLL--KDTDKYRCGSISL 410
           + +E  KV+   +  + Y+   ++L
Sbjct: 333 VCLELYKVVDGKRPLEAYKNAFLNL 357

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. Length = 435

>gnl|CDD|238762 cd01485, E1-1_like, Ubiquitin activating enzyme (E1), repeat 1-like

 Score = 70.9 bits (174), Expect = 3e-14
 Identities = 33/144 (22%), Positives = 66/144 (45%), Gaps = 11/144 (7%)

Query: 7   LEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV--G 64
              ++ AKVL++GAG +G E+ K L L+G   I I+D   +   +L   F         G
Sbjct: 14  QNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSG 73

Query: 65  QSKAKVARDAVLKFRPQMSITAHHANVKDPKFNV-----EFFKQFNVVLNGLDNLDARRH 119
            ++A  + + + +  P + ++     V++   +      E+ ++F +V+   +N +    
Sbjct: 74  MNRAAASYEFLQELNPNVKLSI----VEEDSLSNDSNIEEYLQKFTLVIATEENYERTAK 129

Query: 120 VNRLCLAADVPLVESGTTGFLGQV 143
           VN +C    +P +   T G +G  
Sbjct: 130 VNDVCRKHHIPFISCATYGLIGYA 153

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologous to the first repeat of Ub-E1. Length = 198

>gnl|CDD|238764 cd01487, E1_ThiF_like, E1_ThiF_like

 Score = 68.6 bits (168), Expect = 1e-13
 Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 4/128 (3%)

Query: 14  KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARD 73
           KV + GAGG+G  +   LA SG  ++ ++D D +E SNLNRQ  +  S +G+ K +  ++
Sbjct: 1   KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQ-YFLSQIGEPKVEALKE 59

Query: 74  AVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHV-NRLCLAADVPLV 132
            + +  P + I A +  + D       F   ++V+   DN + +  +   L    + P+V
Sbjct: 60  NLREINPFVKIEAINIKI-DENNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVV 118

Query: 133 -ESGTTGF 139
             SG  GF
Sbjct: 119 CASGMAGF 126

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. Length = 174

>gnl|CDD|183547 PRK12475, PRK12475, thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

 Score = 70.9 bits (174), Expect = 1e-13
 Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 3/183 (1%)

Query: 2   VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQS 61
           + E     I+   VL+VGAG +G    + L  +G   + I D D +E SNL RQ L+ + 
Sbjct: 14  IGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEE 73

Query: 62  HVGQS--KAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRH 119
              Q   KA  A++ + K   ++ I     +V   +   E  K+ +++++  DN D R  
Sbjct: 74  DAKQKKPKAIAAKEHLRKINSEVEIVPVVTDVTVEELE-ELVKEVDLIIDATDNFDTRLL 132

Query: 120 VNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVH 179
           +N L    ++P +  G  G  G     + GKT C  C  +  P     C         V 
Sbjct: 133 INDLSQKYNIPWIYGGCVGSYGVTYTIIPGKTPCLRCLMEHVPVGGATCDTAGIIQPAVQ 192

Query: 180 CIV 182
            +V
Sbjct: 193 IVV 195

Length = 338

>gnl|CDD|181302 PRK08223, PRK08223, hypothetical protein; Validated

 Score = 70.1 bits (172), Expect = 2e-13
 Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 3/146 (2%)

Query: 2   VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQS 61
           ++  + + ++ ++V + G GG+G   L TLA  G     I D D  E+ N NRQ     S
Sbjct: 17  ITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMS 76

Query: 62  HVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLD--NLDARRH 119
            +G+ KA+V  + V    P++ I A    +     +  F    +V ++GLD    DARR 
Sbjct: 77  TLGRPKAEVLAEMVRDINPELEIRAFPEGIGKENAD-AFLDGVDVYVDGLDFFEFDARRL 135

Query: 120 VNRLCLAADVPLVESGTTGFLGQVTV 145
           V   C    +P + +   G    + V
Sbjct: 136 VFAACQQRGIPALTAAPLGMGTALLV 161

Length = 287

>gnl|CDD|185071 PRK15116, PRK15116, sulfur acceptor protein CsdL; Provisional

 Score = 64.8 bits (158), Expect = 7e-12
 Identities = 43/144 (29%), Positives = 74/144 (51%), Gaps = 10/144 (6%)

Query: 4   ERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV 63
           E+ L+    A + +VG GG+G    + LA +G   I +IDMD + V+N NRQ    + +V
Sbjct: 22  EKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNV 81

Query: 64  GQSKAKVARDAVLKFRPQMSITAHHANVKD---PKFNVEFFKQ-FNVVLNGLDNLDARRH 119
           G +KA+V  + + +  P+  +T     V D   P    E+    F+ V++ +D++  +  
Sbjct: 82  GLAKAEVMAERIRQINPECRVTV----VDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAA 137

Query: 120 VNRLCLAADVPLVESGTTGFLGQV 143
           +   C    +PLV +G  G  GQ+
Sbjct: 138 LIAYCRRNKIPLVTTGGAG--GQI 159

Length = 268

>gnl|CDD|181084 PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

 Score = 65.8 bits (161), Expect = 7e-12
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 3/151 (1%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQS- 66
           + ++   VL++GAG +G    + L  +G   + I+D D +E SNL RQ L+ +S V  + 
Sbjct: 20  QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNL 79

Query: 67  -KAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL 125
            KA  A+  + +    + + A   +V   +   E     +++++  DN + R  VN    
Sbjct: 80  PKAVAAKKRLEEINSDVRVEAIVQDV-TAEELEELVTGVDLIIDATDNFETRFIVNDAAQ 138

Query: 126 AADVPLVESGTTGFLGQVTVHVKGKTECYEC 156
              +P +     G  G     + GKT C  C
Sbjct: 139 KYGIPWIYGACVGSYGLSYTIIPGKTPCLRC 169

Length = 339

>gnl|CDD|238761 cd01484, E1-2_like, Ubiquitin activating enzyme (E1), repeat 2-like

 Score = 63.8 bits (155), Expect = 1e-11
 Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 2/63 (3%)

Query: 331 NLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVI 390
            L +D  + +  +F+  A+N RA+ + I   + F  KG+AG I+ AVATTNA++AG+  +
Sbjct: 174 MLQWDDPEHI--QFIFQASNERASQYNIRGVTYFLTKGVAGRIIPAVATTNAVVAGVCAL 231

Query: 391 EAI 393
           E  
Sbjct: 232 EVF 234

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologous to the second repeat of Ub-E1. Length = 234

>gnl|CDD|162819 TIGR02354, thiF_fam2, thiamine biosynthesis protein ThiF, family 2

 Score = 62.6 bits (152), Expect = 2e-11
 Identities = 32/115 (27%), Positives = 63/115 (54%), Gaps = 2/115 (1%)

Query: 3   SERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSH 62
           + + ++ ++ A V + G GG+G  +   LA +G   + ++D D +E SNLNRQ  ++ S 
Sbjct: 12  TPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQ-QYKASQ 70

Query: 63  VGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDAR 117
           VG+ K +  ++ + +  P   I A+   + +   + +FFK  ++V    DN +A+
Sbjct: 71  VGEPKTEALKENISEINPYTEIEAYDEKITEENID-KFFKDADIVCEAFDNAEAK 124

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 200

>gnl|CDD|238768 cd01491, Ube1_repeat1, Ubiquitin activating enzyme (E1), repeat 1

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 36/147 (24%), Positives = 71/147 (48%), Gaps = 13/147 (8%)

Query: 5   RQL-----EAIK---GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQF 56
           RQL     EA+K    + VL+ G GG+G E+ K L L+G + + + D      S+L+ QF
Sbjct: 4   RQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQF 63

Query: 57  LFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDA 116
             R+  +G+++A+ ++  + +  P + +T             +   +F VV+    +L+ 
Sbjct: 64  YLREEDIGKNRAEASQARLAELNPYVPVTVSTG-----PLTTDELLKFQVVVLTDASLED 118

Query: 117 RRHVNRLCLAADVPLVESGTTGFLGQV 143
           +  +N  C +  +  + + T G  G +
Sbjct: 119 QLKINEFCHSPGIKFISADTRGLFGSI 145

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. Length = 286

>gnl|CDD|184853 PRK14851, PRK14851, hypothetical protein; Provisional

 Score = 61.0 bits (148), Expect = 4e-10
 Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 3/141 (2%)

Query: 1   MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
           + +  + E +  AKV + G GG+G   L T+  +G    HI D D  E  N+NRQF  R 
Sbjct: 32  LFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARV 91

Query: 61  SHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLD--NLDARR 118
              G+ K  V ++  L   P + IT   A +     +  F    +VVL+GLD    + RR
Sbjct: 92  PSFGRPKLAVMKEQALSINPFLEITPFPAGINADNMDA-FLDGVDVVLDGLDFFQFEIRR 150

Query: 119 HVNRLCLAADVPLVESGTTGF 139
            +  +     +P++ +G  G+
Sbjct: 151 TLFNMAREKGIPVITAGPLGY 171

Length = 679

>gnl|CDD|238770 cd01493, APPBP1_RUB, Ubiquitin activating enzyme (E1) subunit APPBP1

 Score = 60.0 bits (146), Expect = 8e-10
 Identities = 37/158 (23%), Positives = 68/158 (43%), Gaps = 19/158 (12%)

Query: 5   RQL--------EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQF 56
           RQL         A++ A V ++ A   G E+LK L L G     I+D   ++  +L   F
Sbjct: 5   RQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNF 64

Query: 57  LFRQSHVGQSKAKVARDAVLKFRPQM--SITAHHANVKDPKF----NVEFFKQFNVVLNG 110
               S +G+S+A+    A  +   ++   +    A  + P+     +  FF QF VV+  
Sbjct: 65  FLDASSLGKSRAE----ATCELLQELNPDVNG-SAVEESPEALLDNDPSFFSQFTVVIAT 119

Query: 111 LDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVK 148
                    +  +  +A++PL+   + G  G + + +K
Sbjct: 120 NLPESTLLRLADVLWSANIPLLYVRSYGLYGYIRIQLK 157

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. Length = 425

>gnl|CDD|184854 PRK14852, PRK14852, hypothetical protein; Provisional

 Score = 58.9 bits (142), Expect = 3e-09
 Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 3/139 (2%)

Query: 13  AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVAR 72
           ++V + G GG+G   L TLA +G  + ++ D D     NLNRQ+    +  G+ K  V  
Sbjct: 333 SRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMT 392

Query: 73  DAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLD--NLDARRHVNRLCLAADVP 130
           +  L   P + I +    V     +  F K  +++++G+D   LD RR +    L   +P
Sbjct: 393 ERALSVNPFLDIRSFPEGVAAETIDA-FLKDVDLLVDGIDFFALDIRRRLFNRALELGIP 451

Query: 131 LVESGTTGFLGQVTVHVKG 149
           ++ +G  G+   + V + G
Sbjct: 452 VITAGPLGYSCALLVFMPG 470

Length = 989

>gnl|CDD|238765 cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1) subunit UBA3

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 27/71 (38%), Positives = 39/71 (54%)

Query: 326 EKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIA 385
            KE   +  D DD   +E++   A  RAA F IS  +    +G+   I+ AVA+TNAIIA
Sbjct: 185 PKEFPFVPLDGDDPEHIEWLYQKALERAAQFNISGVTYSLTQGVVKRIIPAVASTNAIIA 244

Query: 386 GLIVIEAIKVL 396
               +EA+K+ 
Sbjct: 245 AACCLEALKIA 255

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Length = 291

>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 39/169 (23%), Positives = 76/169 (44%), Gaps = 8/169 (4%)

Query: 15  VLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDA 74
           VL+ G GG+G E+ K L L+G + + + D +  +  +L+  F   +  VG+++A+     
Sbjct: 27  VLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKK 86

Query: 75  VLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPL--V 132
           + +  P +     H +     FN EF  +F  V+    +L  ++ +N  C +   P+  +
Sbjct: 87  LAELNPYV-----HVSSSSVPFNEEFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFI 141

Query: 133 ESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCI 181
            +   G  G +      + E  +   +  PKT  + +IT      V C+
Sbjct: 142 SADVRGLFGSLFCDFGDEFEVLDTDGE-EPKTGFIASITQANPGIVTCL 189

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. Length = 1008

>gnl|CDD|233388 TIGR01381, E1_like_apg7, E1-like protein-activating enzyme Gsa7p/Apg7p

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 40/144 (27%), Positives = 59/144 (40%), Gaps = 19/144 (13%)

Query: 4   ERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV 63
           + QLE     KVL++GAG +GC + + L   G + I  +D   +  SN  RQ L      
Sbjct: 330 DLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDC 389

Query: 64  ---GQSKAKVARDAVLKFRPQMSITAHHANV----------------KDPKFNVEFFKQF 104
              G+ KA+ A+ A+ +  P +  T H   V                KD     +  K  
Sbjct: 390 LLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDH 449

Query: 105 NVVLNGLDNLDARRHVNRLCLAAD 128
           +VV   LD+ +AR     LC    
Sbjct: 450 DVVFLLLDSREARWLPTVLCSRHK 473

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. Length = 664

>gnl|CDD|238763 cd01486, Apg7, Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV--GQSKAKVA 71
          K L++GAG +GC + + L   G + I  +D   +  SN  RQ LF       G+ KA+ A
Sbjct: 1  KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAA 60

Query: 72 RDAVLKFRPQMSITAH 87
           + + +  P +  T  
Sbjct: 61 AERLKEIFPSIDATGI 76

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. Length = 307

>gnl|CDD|163448 TIGR03736, PRTRC_ThiF, PRTRC system ThiF family protein

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 26/120 (21%)

Query: 14  KVLMVGAGGIGCEL----------LKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV 63
            V++VGAGG G ++          LK L   G   + + D DT+  +N+ RQ  F  + V
Sbjct: 13  SVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ-AFYPADV 71

Query: 64  GQSKAKVARDAVLKFRPQMSI----TAHHANVKDPKFNVE-FFKQFNVVLNGLDNLDARR 118
           GQ+KA      VL  R   ++    TAH       +        + ++V+  +DN  AR 
Sbjct: 72  GQNKA-----IVLVNRLNQAMGTDWTAHPE-----RVERSSTLHRPDIVIGCVDNRAARL 121

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. Length = 244

>gnl|CDD|216527 pfam01488, Shikimate_DH, Shikimate / quinate 5-dehydrogenase

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 4  ERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHII 42
          ++    +KG KVL++GAG +     K L   G + I I 
Sbjct: 4  KKIFGDLKGKKVLLIGAGEMARLAAKHLLSKGAKKITIA 42

This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyzes the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyzes the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate. Length = 133

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	410
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	100.0
KOG2012	1013	consensus Ubiquitin activating enzyme UBA1 [Posttr	100.0
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	100.0
KOG2013	603	consensus SMT3/SUMO-activating complex, catalytic	100.0
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	100.0
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	100.0
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	100.0
KOG2015	422	consensus NEDD8-activating complex, catalytic comp	100.0
PRK08223	287	hypothetical protein; Validated	100.0
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	100.0
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	100.0
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	100.0
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	100.0
PRK07411	390	hypothetical protein; Validated	100.0
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	100.0
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	100.0
PRK08328	231	hypothetical protein; Provisional	100.0
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	100.0
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	100.0
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	100.0
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	100.0
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	100.0
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	100.0
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	100.0
COG0476	254	ThiF Dinucleotide-utilizing enzymes involved in mo	100.0
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	100.0
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	100.0
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	100.0
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	99.98
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	99.98
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	99.98
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	99.98
PRK14851	679	hypothetical protein; Provisional	99.97
PRK14852	989	hypothetical protein; Provisional	99.97
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	99.97
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	99.97
PRK15116	268	sulfur acceptor protein CsdL; Provisional	99.96
PRK07877	722	hypothetical protein; Provisional	99.96
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	99.96
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	99.96
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	99.96
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	99.95
TIGR03603	318	cyclo_dehy_ocin bacteriocin biosynthesis cyclodehy	99.95
PRK06153	393	hypothetical protein; Provisional	99.94
PF02134	67	UBACT: Repeat in ubiquitin-activating (UBA) protei	99.93
KOG2336	422	consensus Molybdopterin biosynthesis-related prote	99.92
KOG2014	331	consensus SMT3/SUMO-activating complex, AOS1/RAD31	99.9
KOG2012	1013	consensus Ubiquitin activating enzyme UBA1 [Posttr	99.89
PTZ00245	287	ubiquitin activating enzyme; Provisional	99.89
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	99.87
KOG2337	669	consensus Ubiquitin activating E1 enzyme-like prot	99.85
KOG2016	523	consensus NEDD8-activating complex, APP-BP1/UBA5 c	99.82
TIGR03693	637	ocin_ThiF_like putative thiazole-containing bacter	99.58
PF10585	45	UBA_e1_thiolCys: Ubiquitin-activating enzyme activ	99.5
COG4015	217	Predicted dinucleotide-utilizing enzyme of the Thi	98.28
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	98.09
TIGR03882	193	cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydr	98.04
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.99
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.85
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.85
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.81
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.62
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.59
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.42
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	97.38
PRK05562	223	precorrin-2 dehydrogenase; Provisional	97.34
PRK12548	289	shikimate 5-dehydrogenase; Provisional	96.98
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	96.92
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	96.88
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.8
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.77
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.71
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	96.68
PRK13940	414	glutamyl-tRNA reductase; Provisional	96.65
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.56
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	96.48
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.47
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	96.45
PRK04148	134	hypothetical protein; Provisional	96.44
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.43
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.42
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.35
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.31
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.25
PRK10637	457	cysG siroheme synthase; Provisional	96.21
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	96.1
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.07
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	96.07
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.04
KOG4169	261	consensus 15-hydroxyprostaglandin dehydrogenase an	95.93
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	95.84
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	95.82
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	95.8
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	95.73
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	95.72
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	95.71
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	95.65
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	95.62
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	95.6
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	95.57
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	95.52
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	95.52
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	95.5
PTZ00082	321	L-lactate dehydrogenase; Provisional	95.5
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	95.49
PLN00203	519	glutamyl-tRNA reductase	95.42
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	95.41
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	95.29
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	95.26
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	95.22
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	95.16
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.14
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.04
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.01
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	94.89
PRK09496	453	trkA potassium transporter peripheral membrane com	94.89
PRK07063	260	short chain dehydrogenase; Provisional	94.85
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	94.79
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.79
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	94.77
PLN02602	350	lactate dehydrogenase	94.77
PRK05854	313	short chain dehydrogenase; Provisional	94.66
PRK13403	335	ketol-acid reductoisomerase; Provisional	94.66
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	94.65
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	94.61
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.59
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	94.56
PRK06197	306	short chain dehydrogenase; Provisional	94.54
PRK09242	257	tropinone reductase; Provisional	94.51
PLN03209	576	translocon at the inner envelope of chloroplast su	94.42
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	94.4
PLN02427	386	UDP-apiose/xylose synthase	94.37
PLN02240	352	UDP-glucose 4-epimerase	94.35
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	94.34
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	94.26
PRK08618	325	ornithine cyclodeaminase; Validated	94.26
PRK08251	248	short chain dehydrogenase; Provisional	94.25
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	94.19
PRK06141	314	ornithine cyclodeaminase; Validated	94.18
PRK00048	257	dihydrodipicolinate reductase; Provisional	94.09
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	94.08
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	94.05
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	94.03
PTZ00431	260	pyrroline carboxylate reductase; Provisional	94.01
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	94.0
PRK07831	262	short chain dehydrogenase; Provisional	93.97
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	93.97
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	93.96
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	93.94
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	93.9
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	93.9
PRK14982	340	acyl-ACP reductase; Provisional	93.85
PRK11730	715	fadB multifunctional fatty acid oxidation complex	93.82
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	93.8
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	93.77
PRK05875	276	short chain dehydrogenase; Provisional	93.76
PRK07523	255	gluconate 5-dehydrogenase; Provisional	93.72
PRK07062	265	short chain dehydrogenase; Provisional	93.71
PRK09496	453	trkA potassium transporter peripheral membrane com	93.69
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	93.68
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	93.65
PRK08655	437	prephenate dehydrogenase; Provisional	93.62
PRK07417	279	arogenate dehydrogenase; Reviewed	93.62
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	93.61
PRK07576	264	short chain dehydrogenase; Provisional	93.61
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	93.59
PLN02688	266	pyrroline-5-carboxylate reductase	93.59
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.54
PRK03562	621	glutathione-regulated potassium-efflux system prot	93.54
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	93.52
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	93.5
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	93.49
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	93.47
PRK06223	307	malate dehydrogenase; Reviewed	93.46
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	93.44
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.42
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	93.41
PRK07340	304	ornithine cyclodeaminase; Validated	93.38
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	93.33
PRK06194	287	hypothetical protein; Provisional	93.19
PRK07680	273	late competence protein ComER; Validated	93.19
PTZ00325	321	malate dehydrogenase; Provisional	93.18
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	93.16
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	93.16
PRK05867	253	short chain dehydrogenase; Provisional	93.12
PRK05866	293	short chain dehydrogenase; Provisional	93.09
PTZ00117	319	malate dehydrogenase; Provisional	93.09
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	93.03
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	93.01
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	92.99
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	92.96
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	92.92
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	92.9
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	92.88
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	92.85
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	92.81
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	92.79
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.74
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	92.71
PLN02206	442	UDP-glucuronate decarboxylase	92.63
PRK08291	330	ectoine utilization protein EutC; Validated	92.63
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	92.61
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	92.59
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	92.59
PRK08339	263	short chain dehydrogenase; Provisional	92.51
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	92.48
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	92.47
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	92.43
PRK13304	265	L-aspartate dehydrogenase; Reviewed	92.41
PRK03659	601	glutathione-regulated potassium-efflux system prot	92.38
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	92.35
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	92.35
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	92.35
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	92.34
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.31
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	92.28
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	92.26
PRK09186	256	flagellin modification protein A; Provisional	92.26
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	92.24
PRK06181	263	short chain dehydrogenase; Provisional	92.23
PLN02253	280	xanthoxin dehydrogenase	92.22
COG0300	265	DltE Short-chain dehydrogenases of various substra	92.21
PRK07478	254	short chain dehydrogenase; Provisional	92.21
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	92.15
PLN02653	340	GDP-mannose 4,6-dehydratase	92.15
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	92.11
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	92.1
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	92.02
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	92.01
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	91.99
PRK07814	263	short chain dehydrogenase; Provisional	91.99
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	91.93
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	91.87
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	91.84
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	91.82
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.81
PRK12939	250	short chain dehydrogenase; Provisional	91.81
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	91.8
PRK06940	275	short chain dehydrogenase; Provisional	91.78
PRK06138	252	short chain dehydrogenase; Provisional	91.78
PRK08277	278	D-mannonate oxidoreductase; Provisional	91.77
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	91.73
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.71
PLN02695	370	GDP-D-mannose-3',5'-epimerase	91.7
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	91.7
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	91.68
PRK07453	322	protochlorophyllide oxidoreductase; Validated	91.66
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	91.62
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.6
PRK06567	1028	putative bifunctional glutamate synthase subunit b	91.59
PRK06172	253	short chain dehydrogenase; Provisional	91.54
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	91.53
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	91.52
PRK12829	264	short chain dehydrogenase; Provisional	91.52
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	91.52
PRK05876	275	short chain dehydrogenase; Provisional	91.5
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.49
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	91.39
PLN02852	491	ferredoxin-NADP+ reductase	91.38
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	91.33
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	91.32
PLN02214	342	cinnamoyl-CoA reductase	91.29
CHL00194	317	ycf39 Ycf39; Provisional	91.29
TIGR00065	349	ftsZ cell division protein FtsZ. This family consi	91.28
PRK10675	338	UDP-galactose-4-epimerase; Provisional	91.27
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	91.23
PRK07326	237	short chain dehydrogenase; Provisional	91.21
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	91.17
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	91.13
PRK07024	257	short chain dehydrogenase; Provisional	91.13
PLN02650	351	dihydroflavonol-4-reductase	91.13
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	91.13
PRK13018	378	cell division protein FtsZ; Provisional	91.07
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	91.0
PLN02166	436	dTDP-glucose 4,6-dehydratase	90.97
PRK06949	258	short chain dehydrogenase; Provisional	90.97
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	90.92
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	90.9
PRK07035	252	short chain dehydrogenase; Provisional	90.89
PLN02572	442	UDP-sulfoquinovose synthase	90.88
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	90.86
PRK06545	359	prephenate dehydrogenase; Validated	90.83
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	90.76
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	90.74
PLN02896	353	cinnamyl-alcohol dehydrogenase	90.74
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	90.71
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	90.7
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	90.56
PRK05872	296	short chain dehydrogenase; Provisional	90.54
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	90.52
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	90.52
PRK12744	257	short chain dehydrogenase; Provisional	90.49
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	90.49
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	90.46
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	90.37
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	90.33
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	90.32
PRK08213	259	gluconate 5-dehydrogenase; Provisional	90.31
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.26
PRK08265	261	short chain dehydrogenase; Provisional	90.22
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	90.21
PRK05855	582	short chain dehydrogenase; Validated	90.2
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	90.2
cd02201	304	FtsZ_type1 FtsZ is a GTPase that is similar to the	90.19
PRK13243	333	glyoxylate reductase; Reviewed	90.18
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	90.15
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	90.14
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.13
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	90.12
PRK06046	326	alanine dehydrogenase; Validated	90.11
PRK10537	393	voltage-gated potassium channel; Provisional	90.09
PRK07774	250	short chain dehydrogenase; Provisional	90.03
PRK07102	243	short chain dehydrogenase; Provisional	90.03
PRK06125	259	short chain dehydrogenase; Provisional	90.02
PRK09330	384	cell division protein FtsZ; Validated	90.01
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.91
PRK10669	558	putative cation:proton antiport protein; Provision	89.91
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.9
PRK15076	431	alpha-galactosidase; Provisional	89.88
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	89.85
PRK06196	315	oxidoreductase; Provisional	89.85
PRK08643	256	acetoin reductase; Validated	89.81
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	89.8
PRK06139	330	short chain dehydrogenase; Provisional	89.77
PRK12480	330	D-lactate dehydrogenase; Provisional	89.76
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	89.74
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	89.74
PRK06124	256	gluconate 5-dehydrogenase; Provisional	89.74
PRK12367	245	short chain dehydrogenase; Provisional	89.73
PRK12827	249	short chain dehydrogenase; Provisional	89.7
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	89.66
PRK08306	296	dipicolinate synthase subunit A; Reviewed	89.64
PRK07109	334	short chain dehydrogenase; Provisional	89.55
PRK08226	263	short chain dehydrogenase; Provisional	89.54
PRK08278	273	short chain dehydrogenase; Provisional	89.52
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	89.51
PLN02780	320	ketoreductase/ oxidoreductase	89.5
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	89.43
TIGR00036	266	dapB dihydrodipicolinate reductase.	89.43
PLN02928	347	oxidoreductase family protein	89.42
PRK08818	370	prephenate dehydrogenase; Provisional	89.41
PRK08374	336	homoserine dehydrogenase; Provisional	89.38
PRK07806	248	short chain dehydrogenase; Provisional	89.37
PLN03129	581	NADP-dependent malic enzyme; Provisional	89.35
COG0281	432	SfcA Malic enzyme [Energy production and conversio	89.3
PRK09072	263	short chain dehydrogenase; Provisional	89.29
PRK05479	330	ketol-acid reductoisomerase; Provisional	89.26
PRK07074	257	short chain dehydrogenase; Provisional	89.25
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	89.17
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	89.1
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	89.08
PRK08324	681	short chain dehydrogenase; Validated	89.06
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	88.98
PRK13529	563	malate dehydrogenase; Provisional	88.96
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	88.96
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	88.95
PRK07856	252	short chain dehydrogenase; Provisional	88.94
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	88.94
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	88.8
PRK08085	254	gluconate 5-dehydrogenase; Provisional	88.77
PRK15059	292	tartronate semialdehyde reductase; Provisional	88.77
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	88.74
PRK07097	265	gluconate 5-dehydrogenase; Provisional	88.74
PRK06114	254	short chain dehydrogenase; Provisional	88.73
PRK12746	254	short chain dehydrogenase; Provisional	88.67
PTZ00188	506	adrenodoxin reductase; Provisional	88.67
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	88.63
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	88.63
PLN00198	338	anthocyanidin reductase; Provisional	88.61
PRK07677	252	short chain dehydrogenase; Provisional	88.6
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	88.58
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	88.57
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	88.54
PRK07890	258	short chain dehydrogenase; Provisional	88.5
PRK05717	255	oxidoreductase; Validated	88.49
PRK10538	248	malonic semialdehyde reductase; Provisional	88.48
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	88.43
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	88.43
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	88.38
PLN02494	477	adenosylhomocysteinase	88.37
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	88.3
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	88.23
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	88.22
PLN02383	344	aspartate semialdehyde dehydrogenase	88.22
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	88.21
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	88.2
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	88.19
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	88.19
PTZ00075	476	Adenosylhomocysteinase; Provisional	88.17
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	88.11
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	88.08
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	88.05
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	88.05
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	88.02
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	87.99
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	87.89
PRK12779	944	putative bifunctional glutamate synthase subunit b	87.89
PLN02503	605	fatty acyl-CoA reductase 2	87.83
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	87.75
PRK06523	260	short chain dehydrogenase; Provisional	87.71
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	87.67
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.67
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	87.63
PRK06487	317	glycerate dehydrogenase; Provisional	87.52
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	87.46
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	87.42
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	87.41
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	87.41
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	87.38
PRK13303	265	L-aspartate dehydrogenase; Provisional	87.37
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	87.35
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	87.34
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	87.33
PRK08264	238	short chain dehydrogenase; Validated	87.32
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	87.25
PRK06436	303	glycerate dehydrogenase; Provisional	87.25
PRK08340	259	glucose-1-dehydrogenase; Provisional	87.25
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.25
PRK06270	341	homoserine dehydrogenase; Provisional	87.23
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	87.21
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	87.18
PLN02256	304	arogenate dehydrogenase	87.16
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	87.12
PRK07454	241	short chain dehydrogenase; Provisional	87.11
PRK06128	300	oxidoreductase; Provisional	87.09
PRK12814	652	putative NADPH-dependent glutamate synthase small	87.09
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	87.08
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	87.03
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	86.94
PRK06914	280	short chain dehydrogenase; Provisional	86.93
PF10087	97	DUF2325: Uncharacterized protein conserved in bact	86.85
PRK07574	385	formate dehydrogenase; Provisional	86.84
PRK08936	261	glucose-1-dehydrogenase; Provisional	86.83
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	86.71
PRK07904	253	short chain dehydrogenase; Provisional	86.65
PRK08589	272	short chain dehydrogenase; Validated	86.63
KOG0409	327	consensus Predicted dehydrogenase [General functio	86.58
PLN00106	323	malate dehydrogenase	86.52
TIGR01746	367	Thioester-redct thioester reductase domain. It has	86.52
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	86.46
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	86.44
PRK06057	255	short chain dehydrogenase; Provisional	86.42
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	86.39
PRK07067	257	sorbitol dehydrogenase; Provisional	86.37
PRK05650	270	short chain dehydrogenase; Provisional	86.34
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	86.31
PRK08862	227	short chain dehydrogenase; Provisional	86.3
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	86.25
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	86.24
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	86.23
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	86.21
PRK05884	223	short chain dehydrogenase; Provisional	86.21
PRK08267	260	short chain dehydrogenase; Provisional	86.2
PRK07791	286	short chain dehydrogenase; Provisional	86.15
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	86.12
PRK00811	283	spermidine synthase; Provisional	86.12
PRK12831	464	putative oxidoreductase; Provisional	86.12
PRK06841	255	short chain dehydrogenase; Provisional	86.11
PLN00016	378	RNA-binding protein; Provisional	86.1
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	86.09
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	86.04
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	86.0
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	85.96
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	85.86
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	85.77
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	85.72
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	85.7
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	85.68
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	85.67
PRK09135	249	pteridine reductase; Provisional	85.65
PRK12937	245	short chain dehydrogenase; Provisional	85.65
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	85.58
PRK09291	257	short chain dehydrogenase; Provisional	85.55
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	85.54
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	85.51
PRK06932	314	glycerate dehydrogenase; Provisional	85.42
PLN02740	381	Alcohol dehydrogenase-like	85.42
TIGR02415	254	23BDH acetoin reductases. One member of this famil	85.35
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	85.32
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	85.32
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	85.26
PRK09126	392	hypothetical protein; Provisional	85.19
PRK08303	305	short chain dehydrogenase; Provisional	85.19
PLN03139	386	formate dehydrogenase; Provisional	85.15
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	85.11
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	85.07
PRK06398	258	aldose dehydrogenase; Validated	85.04
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	84.99
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	84.96
PRK08507	275	prephenate dehydrogenase; Validated	84.89
PRK06185	407	hypothetical protein; Provisional	84.78
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	84.74
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	84.71
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	84.69
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	84.68
PRK14031	444	glutamate dehydrogenase; Provisional	84.64
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	84.63
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	84.62
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	84.59
PRK08628	258	short chain dehydrogenase; Provisional	84.49

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=100.00  E-value=3.6e-94  Score=788.21  Aligned_cols=408  Identities=32%  Similarity=0.494  Sum_probs=337.8

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCC-----CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHH
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGF-----QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVL   76 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv-----~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~   76 (410)
                      +|.++|++|++++|+||||||+|||++|+|+++||     |+|+|+|+|+|+.|||||||||+.+|||++|+++|+++++
T Consensus       409 ~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~Ka~vaa~~l~  488 (1008)
T TIGR01408       409 FGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKPKSYTAADATL  488 (1008)
T ss_pred             cCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCcHHHHHHHHHHH
Confidence            69999999999999999999999999999999999     8999999999999999999999999999999999999999


Q ss_pred             hhCCCCeEEEEccCCCC---CcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCcc
Q 015243           77 KFRPQMSITAHHANVKD---PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTEC  153 (410)
Q Consensus        77 ~~np~v~i~~~~~~i~~---~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c  153 (410)
                      ++||+++|+++..++..   ..++.+||+++|+|++|+||.++|.+++++|+.+++|+|++|+.|+.|++++++|+.|+|
T Consensus       489 ~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~~G~v~v~ip~~te~  568 (1008)
T TIGR01408       489 KINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGTKGNTQVVVPHLTES  568 (1008)
T ss_pred             HHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCceeeEEEEeCCCcCC
Confidence            99999999999999853   346678999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCCCceeeccCCCcchHHHHHHHHHHHHHHhCCCCcccc-c-ccc----------C-ccc-cchhhHHhhh
Q 015243          154 YECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQEND-L-NVR----------S-SDA-SSSAHAEDVF  219 (410)
Q Consensus       154 ~~C~~~~~~~~~p~cti~~~p~~~~h~i~~a~~~~f~~~f~~~~~~~~-~-~~~----------~-~~~-~~~~~~~~~~  219 (410)
                      |.|.++++++++|+||++++|+.++|||+||++ +|+.+|+..++..+ + ..+          . ... ..++.+.+.+
T Consensus       569 y~~~~d~~~~~~P~Ctl~~~P~~~~h~i~wa~~-~f~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l  647 (1008)
T TIGR01408       569 YGSSRDPPEKEIPFCTLKSFPAAIEHTIQWARD-KFEGLFSHKPSLVNKYLSSPSSAEEVLQKIQSGHSREGLEQIIKLL  647 (1008)
T ss_pred             CCCCCCCCCCCCCcccccCCCCCchHHHHHHHH-HHHHHHHhhHHHHHHHhhChHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            999999989999999999999999999999999 79999997665421 1 110          0 000 1234444444


Q ss_pred             ---hcCCcccHHHHHHHHHHhhhcccHHHHhcC----------CcccCC-CCCCCccccC--CCCCcchhhhcccccccc
Q 015243          220 ---VRRKDEDIDQYGRRIYDHVFGYNIEVASSN----------EETWKN-RNRPKPIYSA--DVMPENLTEQNGNVAKNC  283 (410)
Q Consensus       220 ---~~~~~~~~~~~a~~~f~~~F~~~I~~ll~~----------~~fw~~-k~~P~pl~~~--~~~~~~~~~~~~~~~~~~  283 (410)
                         .+..+++|++||+.+|+++|+++|+|||++          ++||++ ||+|+||+|+  +..+.+++.++++|++..
T Consensus       648 ~~~~p~~~~~cv~~a~~~f~~~F~~~I~qLl~~fP~d~~~~~G~~fWs~~kr~P~pl~Fd~~~~~h~~Fi~aaanL~A~~  727 (1008)
T TIGR01408       648 SKEKPRNFSQCVEWARLKFEKYFNNKALQLLHCFPLDIRTSTGSPFWSSPKRPPSPLKFDLNEPLHLSFIQAAAKLYATV  727 (1008)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCccccCCCCCCCceeeCCCCHHHHHHHHHHHHHHHHH
Confidence               356899999999999999999999999987          899996 9999999999  445566777777776542


Q ss_pred             ---cc---cchhhhHHhhh---CCC-----CCCCcccc------hhchHHHHHHHHHHHHhh---h-----hccCCcccc
Q 015243          284 ---VV---DTSSVSAMASL---GLK-----NPQDTWTL------LESSRIFLEALKLFFAKR---E-----KEIGNLSFD  335 (410)
Q Consensus       284 ---~~---~~~~~~~~~~~---~~~-----~~~~~~~~------~~~~~~~~~~~~~~~~~~---~-----~~~~p~~Fe  335 (410)
                         +.   +.......+.+   .+.     ....+++-      .++...+.+++.++..+.   .     ..+.|++||
T Consensus       728 ygi~~~~~~~~~~~~~~~~~~~~vp~f~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~p~~Fe  807 (1008)
T TIGR01408       728 YGIPFAEEDLSADALLNILSEVKIPEFKPRSNKKIQTDETARKPDTAPEDDRNAIFQLEKAILSNEATKSDFRMAPLSFE  807 (1008)
T ss_pred             hCCCCccccchHHHHHHHHhcCCCCCCCCCcCceeecChhhhcccccccchHHHHHHHHHHhhccccccCCCCCCceeec
Confidence               11   11101111111   111     11122321      100111233344433321   1     248899999


Q ss_pred             CCcHH--HHHHHHHHHHHHHHhcCCCCCChhHHHhhhccccchhhhHHHHHHHHHHHHHHHHHhcC--ccccccccccC
Q 015243          336 KDDQL--AVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKD--TDKYRCGSISL  410 (410)
Q Consensus       336 KDDd~--hidFI~AasNLRA~ny~I~~~~~~~~k~iag~IiPAiatT~aivagl~~~e~~k~~~~~--~~~~r~~~~~l  410 (410)
                      ||||+  |||||+|||||||+||+||++|||++|+||||||||||||||+||||||+|+||++.|.  ++.|||+|+||
T Consensus       808 KDDd~n~HidFI~AasNLRA~nY~I~~~d~~~~K~iAG~IIPAiATTTA~vaGLv~lEl~Kv~~~~~~i~~~kn~f~nl  886 (1008)
T TIGR01408       808 KDDDHNGHIDFITAASNLRAKNYSIEPADRFKTKFIAGKIIPAIATSTATVSGLVCLELIKVTDGGYKFEVYKNCFLNL  886 (1008)
T ss_pred             cCCCcchHHHHHHHHHhhHHHhcCCCcccHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHhccccHHHHhHHHHhh
Confidence            99998  99999999999999999999999999999999999999999999999999999999994  69999999997

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.6e-95  Score=745.99  Aligned_cols=408  Identities=33%  Similarity=0.511  Sum_probs=337.6

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCC-----cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHH
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQ-----DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVL   76 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~-----~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~   76 (410)
                      ||.+.|+||.++++++||||+||||++||++++|+|     +|+++|+|.||.||||||||||..|||++|+++|+++++
T Consensus       420 fG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFLFR~~dVgk~KSe~AA~A~~  499 (1013)
T KOG2012|consen  420 FGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFLFRPWDVGKPKSEVAAAAAR  499 (1013)
T ss_pred             hchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccceeeccccccCchHHHHHHHHHH
Confidence            799999999999999999999999999999999994     799999999999999999999999999999999999999


Q ss_pred             hhCCCCeEEEEccCC---CCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCcc
Q 015243           77 KFRPQMSITAHHANV---KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTEC  153 (410)
Q Consensus        77 ~~np~v~i~~~~~~i---~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c  153 (410)
                      .+||+++|+++..++   +|..|+++||.+.|+|.+|+||++||+|+++.|+.+.+|++++||.|++|++++++|+.|+.
T Consensus       500 ~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~kPLLESGTlGTKGntQVvvPhlTEs  579 (1013)
T KOG2012|consen  500 GMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYRKPLLESGTLGTKGNTQVVVPHLTES  579 (1013)
T ss_pred             hcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhccchhhccCcCCccceeEEecccccc
Confidence            999999999999998   67899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCCCceeeccCCCcchHHHHHHHHHHHHHHhCCCCcccc--cccc----------Ccccc--chhhHHhhh
Q 015243          154 YECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQEND--LNVR----------SSDAS--SSAHAEDVF  219 (410)
Q Consensus       154 ~~C~~~~~~~~~p~cti~~~p~~~~h~i~~a~~~~f~~~f~~~~~~~~--~~~~----------~~~~~--~~~~~~~~~  219 (410)
                      |....+|+++++|+||+++||+.++|||+|||+ .|+.+|.+..+..+  +..+          +....  .++.+.+.+
T Consensus       580 Y~SS~DPPEksiP~CTlknFPn~IeHTiqWAR~-eFEg~F~~~~e~vN~yls~p~f~e~sl~~~~~~~~~~~l~~v~~~l  658 (1013)
T KOG2012|consen  580 YGSSRDPPEKSIPVCTLKSFPNAIEHTIQWARD-EFEGLFKQSAENVNKYLSDPVFYETSLKLIGEPQSLETLERVVDCL  658 (1013)
T ss_pred             ccccCCCcccCCceeeeccCchHHHHHHHHHHH-HHHHHhhCCHHHHHHHhcCchHHHHHHhhccCcchhHHHHHHHHHh
Confidence            999999999999999999999999999999999 79999998765421  1111          00011  223333344


Q ss_pred             h--cCCcccHHHHHHHHHHhhhcccHHHHhcC----------CcccCC-CCCCCccccCCCC--Ccchhhhcccccccc-
Q 015243          220 V--RRKDEDIDQYGRRIYDHVFGYNIEVASSN----------EETWKN-RNRPKPIYSADVM--PENLTEQNGNVAKNC-  283 (410)
Q Consensus       220 ~--~~~~~~~~~~a~~~f~~~F~~~I~~ll~~----------~~fw~~-k~~P~pl~~~~~~--~~~~~~~~~~~~~~~-  283 (410)
                      .  +..|++|++||+..|+++|+++|.|||.+          .|||++ ||+|+||+|+...  +-.+++.++++++.. 
T Consensus       659 ~~rp~~~~dCv~warl~f~~~f~~~ikqLl~~FP~d~~t~~G~pFWs~pKr~P~pl~Fd~n~~~hl~fv~Aaa~l~a~~~  738 (1013)
T KOG2012|consen  659 SERPQNWQDCVEWARLHFEKYFHNRIKQLLHNFPPDAKTSDGAPFWSGPKRCPRPLEFDVNDPLHLNFVQAAANLRAEVY  738 (1013)
T ss_pred             hcCCccHHHHHHHHHHHHHHHhhHHHHHhhcCCCcccccCCCCcCCCCCCCCCCceeecCCCchhHHHHHHHHHHHHHhc
Confidence            3  46899999999999999999999999975          899986 9999999999544  445566666665431 


Q ss_pred             --cccchhhhHH---hhh--CCCCCCC---cc-cchh------c--hHHHHHHHHHHHHhhhh----ccCCccccCCcHH
Q 015243          284 --VVDTSSVSAM---ASL--GLKNPQD---TW-TLLE------S--SRIFLEALKLFFAKREK----EIGNLSFDKDDQL  340 (410)
Q Consensus       284 --~~~~~~~~~~---~~~--~~~~~~~---~~-~~~~------~--~~~~~~~~~~~~~~~~~----~~~p~~FeKDDd~  340 (410)
                        +...+.....   ...  +..++.+   +. +..+      +  -..-+.+++..+..++.    .+.|+.||||||.
T Consensus       739 gi~~~~d~~~~~~~~~~v~~p~f~P~~~~~i~~~~~~~~~~~~s~d~~~~i~~l~~~l~~~~~~~~~~~~p~~FEKDDDs  818 (1013)
T KOG2012|consen  739 GIPGSQDREALAELLERVIVPEFEPKQKVKIVVEEAELAASSASVDDSAAIDQLNKALPSPSVLPSFKMKPLDFEKDDDS  818 (1013)
T ss_pred             CCCcccCHHHhhhhHhhcCCCccccccCCeecccccccccccccCCchHHHHHHhhcccccccCCCCceeeeeecccccc
Confidence              1111111000   000  0001110   00 0000      0  01123445444444332    5889999999997


Q ss_pred             --HHHHHHHHHHHHHHhcCCCCCChhHHHhhhccccchhhhHHHHHHHHHHHHHHHHHhc--CccccccccccC
Q 015243          341 --AVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLK--DTDKYRCGSISL  410 (410)
Q Consensus       341 --hidFI~AasNLRA~ny~I~~~~~~~~k~iag~IiPAiatT~aivagl~~~e~~k~~~~--~~~~~r~~~~~l  410 (410)
                        |||||+|||||||.||+||++||+++|+|||+||||||||||+|+||+|+|+||++.|  ++++|||+|+||
T Consensus       819 N~H~dfi~aasnlRA~nY~I~~adr~k~K~IaGkIIPAIATtTa~v~Glv~LElyKv~~G~~~~e~~Kn~flnL  892 (1013)
T KOG2012|consen  819 NFHMDFITAASNLRAQNYSIPPADRLKTKRIAGKIIPAIATTTAAVSGLVCLELYKVVDGKRPVEAYKNTFLNL  892 (1013)
T ss_pred             ccchHHHHHHhhhhhhccCCCccchhhhheeeeeEEEEEeehhHHHHHHHHhhhhhhccCCCchHHhhhhhhcc
Confidence              9999999999999999999999999999999999999999999999999999999999  479999999997

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=100.00  E-value=2.8e-91  Score=702.65  Aligned_cols=334  Identities=39%  Similarity=0.619  Sum_probs=297.5

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCC-----CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           14 KVLMVGAGGIGCELLKTLALSGF-----QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv-----~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      ||+||||||+|||++|+|+++||     |+|+|+|+|+||.|||+|||||+++|||++|+++++++++++||+++|+++.
T Consensus         1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~   80 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ   80 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence            69999999999999999999999     9999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCC---CcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCCCCCCCC
Q 015243           89 ANVKD---PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTY  165 (410)
Q Consensus        89 ~~i~~---~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~~~~~~~  165 (410)
                      .++.+   ..++.+|++++|+|++|+||.++|.+++++|+.+++|+|++|+.|+.|++++++|+.|+||.|..++++.++
T Consensus        81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~~G~v~v~iP~~te~y~~~~~p~~~~~  160 (435)
T cd01490          81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGTKGNTQVVIPHLTESYSSSRDPPEKSI  160 (435)
T ss_pred             cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccceeEEEEEeCCCCCCccCCCCCCCCCC
Confidence            98853   346678999999999999999999999999999999999999999999999999999999999988888999


Q ss_pred             CceeeccCCCcchHHHHHHHHHHHHHHhCCCCccccccccCccccchhhHHhhhhcCCcccHHHHHHHHHHhhhcccHHH
Q 015243          166 PVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEV  245 (410)
Q Consensus       166 p~cti~~~p~~~~h~i~~a~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~F~~~I~~  245 (410)
                      |+||++++|+.++|||+||++ +|+.+|++.++.               ...++    +++|++||+.+|+++|.++|+|
T Consensus       161 P~Ctl~~~P~~~eHcI~wA~~-~F~~lF~~~~~~---------------~~~~~----~~~c~~~a~~~f~~~F~~~I~~  220 (435)
T cd01490         161 PLCTLKNFPNAIEHTIQWARD-EFEGLFKQPPEN---------------VNQYL----FEDCVRWARLLFEKYFNNNIKQ  220 (435)
T ss_pred             CCccccCCCCCchHHHHHHHH-HHHHHhccchHH---------------HHHhh----HHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999 799999865431               11121    7899999999999999999999


Q ss_pred             HhcC----------CcccCC-CCCCCccccCCCCCcchhhhcccccccccccchhhhHHhhhCCCCCCCcccchhchHHH
Q 015243          246 ASSN----------EETWKN-RNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIF  314 (410)
Q Consensus       246 ll~~----------~~fw~~-k~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (410)
                      ||++          ++||++ ||+|+|++|+...+.+                                        ..|
T Consensus       221 ll~~~p~d~~~~~g~~fw~~~kr~P~p~~fd~~~~~h----------------------------------------~~f  260 (435)
T cd01490         221 LLHNFPPDAVTSDGAPFWSGPKRCPTPLEFDVNNPLH----------------------------------------LDF  260 (435)
T ss_pred             HHHhCccccccccccccccCCCCCCCCCCCCCCCHHH----------------------------------------HHH
Confidence            9985          899987 8899999888432211                                        122


Q ss_pred             HHHHHHHHHhhhhccCCccccCCcHH--HHHHHHHHHHHHHHhcCCCCCChhHHHhhhccccchhhhHHHHHHHHHHHHH
Q 015243          315 LEALKLFFAKREKEIGNLSFDKDDQL--AVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEA  392 (410)
Q Consensus       315 ~~~~~~~~~~~~~~~~p~~FeKDDd~--hidFI~AasNLRA~ny~I~~~~~~~~k~iag~IiPAiatT~aivagl~~~e~  392 (410)
                      +.+...+.++.   .+-..||||||+  |||||+|||||||+||+|++.|++++|+||||||||||||||+||||+|+|+
T Consensus       261 v~~~a~l~a~~---~~~~~FeKDdd~n~h~~fi~a~snlRa~~y~I~~~~~~~~k~iag~IIPAiaTT~aivagl~~~e~  337 (435)
T cd01490         261 VLAAANLYAEV---YGIPGFEKDDDTNFHMDFITAASNLRARNYSIPPADRHKTKRIAGKIIPAIATTTAAVTGLVCLEL  337 (435)
T ss_pred             HHHHHHHHHHh---cCCCccccCCchhHHHHHHHHhhhhHHHHcCCCccCHHHHHHHhhCCCCchhhHHHHHHHHHHHHH
Confidence            22232222211   111239999997  9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcC--ccccccccccC
Q 015243          393 IKVLLKD--TDKYRCGSISL  410 (410)
Q Consensus       393 ~k~~~~~--~~~~r~~~~~l  410 (410)
                      ||+++++  ++.|||+|+||
T Consensus       338 ~K~~~~~~~~~~~~n~~~nl  357 (435)
T cd01490         338 YKVVDGKRPLEAYKNAFLNL  357 (435)
T ss_pred             HHHHhCCccHHHcchHhhhc
Confidence            9999994  79999999997

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-91  Score=686.89  Aligned_cols=395  Identities=55%  Similarity=0.871  Sum_probs=335.9

Q ss_pred             CCCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC
Q 015243            1 MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP   80 (410)
Q Consensus         1 ~~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np   80 (410)
                      |...+.++.+.++|||||||||||||++|+|+++|+++|+|||.|+|+.|||||||||+.+|||++||.+|++.++++||
T Consensus         1 ~~~~~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnp   80 (603)
T KOG2013|consen    1 MSPREKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNP   80 (603)
T ss_pred             CchHHHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCC
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCCC
Q 015243           81 QMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP  160 (410)
Q Consensus        81 ~v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~~  160 (410)
                      ++++.++..++.+..++.+||++||+|++|+||.+||.|+|++|...++|+|++|+.|+.||++++.+|.|+||+|.+.|
T Consensus        81 n~~l~~yhanI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt~Gf~GQv~~ii~GkTECyeC~pK~  160 (603)
T KOG2013|consen   81 NIKLVPYHANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGTGGFLGQVQVIIKGKTECYECIPKP  160 (603)
T ss_pred             CCceEeccccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecCcccccceEEEEecCCcceecccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCceeeccCCCcchHHHHHHHHHHHHHHhCCCCcccc--ccccCcccc--c-hh------hHHhhhhcCCcccHHH
Q 015243          161 APKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQEND--LNVRSSDAS--S-SA------HAEDVFVRRKDEDIDQ  229 (410)
Q Consensus       161 ~~~~~p~cti~~~p~~~~h~i~~a~~~~f~~~f~~~~~~~~--~~~~~~~~~--~-~~------~~~~~~~~~~~~~~~~  229 (410)
                      .|++||+|||||+|+.++|||.||++++|.++|+.......  .+..+.+..  . .+      ..+++.+++  +..+.
T Consensus       161 ~~kTypvCTIRstPS~~iHCIVWAK~~lF~qlF~~d~~~q~~~~d~~d~d~~e~~t~~~~~~~~et~d~~Er~--~~i~~  238 (603)
T KOG2013|consen  161 VPKTYPVCTIRSTPSEPIHCIVWAKHYLFNQLFGEDDDDQYGRHDNADPDNCEDMTEEEAEAFRETEDLKERR--ESIVE  238 (603)
T ss_pred             CCCcCCceEeecCCCCceeeeeehHhHHHHHHhccccccccccccccCchhhhccChhhhhhhccchHHHHHH--HHHHH
Confidence            99999999999999999999999999899999997544211  111010000  0 01      111222111  12223


Q ss_pred             HH-------HHHHHhhhcccHHHHhcCCcccCCCCCCCccccCCCCCcchhhhcccccccccccchhhhHHhhhCCCCCC
Q 015243          230 YG-------RRIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQ  302 (410)
Q Consensus       230 ~a-------~~~f~~~F~~~I~~ll~~~~fw~~k~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (410)
                      +.       ..+|.++|.++|++|+.++..|+.|++|.||+|++.......+.+.           ..+ +..-...++|
T Consensus       239 ~~~~~~~~~~~i~~klF~~dI~yl~~~e~~wk~r~~p~pl~~~~~i~~~~~t~ns-----------~~q-~~~~a~~~~~  306 (603)
T KOG2013|consen  239 IDKNLDFGPFKIFNKLFIYDIEYLLGMEALWKPRSRPVPLSIAEVISTSLETINS-----------IVQ-SITSAQLNDQ  306 (603)
T ss_pred             HhhccCCChhhhhhHHHHHHHHHHHhhhhhccCCCCCCCcchhhccCCccccccc-----------hhh-hccccccCCc
Confidence            32       5689999999999999999999999999999988654332221110           000 0011235678


Q ss_pred             CcccchhchHHHHHHHHHHHHhhhhccCC--ccccCCcHHHHHHHHHHHHHHHHhcCCCCCChhHHHhhhccccchhhhH
Q 015243          303 DTWTLLESSRIFLEALKLFFAKREKEIGN--LSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATT  380 (410)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~FeKDDd~hidFI~AasNLRA~ny~I~~~~~~~~k~iag~IiPAiatT  380 (410)
                      .+|+++++..+|..+++.+..+..+.-.-  +.|||||.+.|+||+||+|+||+.|+||..+.|++|.||||||||||||
T Consensus       307 ~v~~v~~~~~vf~~~i~~l~~~~~~~~~h~~l~fdKdd~~~~~FVaaaaNiRa~if~ipmkS~Fdik~mAgnIipaIAtT  386 (603)
T KOG2013|consen  307 NVWTVDEGAVVFRLSIQALDLRCPKESDHWYLIFDKDDASTMEFVAAAANIRAHIFGIPMKSLFDIKQMAGNIIPAIATT  386 (603)
T ss_pred             ceeeeccccHHHHHHHHHhcccCCccCCCceEEEcCCcHHHHHHHHHHhhhhhhhhccchhhhhchHhHhcccchhhhhh
Confidence            99999999999999998885554443344  8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCcccccccccc
Q 015243          381 NAIIAGLIVIEAIKVLLKDTDKYRCGSIS  409 (410)
Q Consensus       381 ~aivagl~~~e~~k~~~~~~~~~r~~~~~  409 (410)
                      ||+|||+.|+|.+|+|+|...++|++|.+
T Consensus       387 NAiIagliv~eaiKvl~~~~~~~~~~f~~  415 (603)
T KOG2013|consen  387 NAIIAGLIVTEAIKVLGGDFDDCNMIFLA  415 (603)
T ss_pred             hhHHHHHHHHHHHHHhccchhcceeeEEc
Confidence            99999999999999999999999999864

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=100.00  E-value=4.9e-85  Score=635.51  Aligned_cols=288  Identities=66%  Similarity=1.074  Sum_probs=276.2

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCCC
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD   93 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~   93 (410)
                      ||+|||+||+|||++|+|+++|+|+|+|+|+|.||.+||+|||||+++|||++|+++++++++++||+++|+++..++++
T Consensus         1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~   80 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD   80 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCCCCCCCCCceeeccC
Q 015243           94 PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITST  173 (410)
Q Consensus        94 ~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~~~~~~~p~cti~~~  173 (410)
                      ..++.+|++++|+||+|+||.++|.++|++|+.+++|+|++|+.|+.|+++++.|+.++||+|.++++++++|+|||+++
T Consensus        81 ~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~~~~~~~pictI~~~  160 (312)
T cd01489          81 PDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQVIKKGKTECYECQPKETPKTFPVCTIRST  160 (312)
T ss_pred             ccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcceeEEEEEcCCCCCccCCCCCCCCCcCCcceecCC
Confidence            66778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHHHhCCCCccccccccCccccchhhHHhhhhcCCcccHHHHHHHHHHhhhcccHHHHhcCCccc
Q 015243          174 PSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASSNEETW  253 (410)
Q Consensus       174 p~~~~h~i~~a~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~F~~~I~~ll~~~~fw  253 (410)
                      |+.++|||+||++ +|+                                           +|+++|.++|++|+++++||
T Consensus       161 p~~~~hci~~a~~-~f~-------------------------------------------~~~~~f~~~i~~l~~~~~~w  196 (312)
T cd01489         161 PSQPIHCIVWAKS-LFF-------------------------------------------LFNKVFKDDIERLLSMEELW  196 (312)
T ss_pred             CCCCEeehhHHHH-HHH-------------------------------------------HHHHHHHHHHHHHHhhhhhh
Confidence            9999999999998 454                                           57899999999999999999


Q ss_pred             CCCCCCCccccCCCCCcchhhhcccccccccccchhhhHHhhhCCCCCCCcccchhchHHHHHHHHHHHHhhhhccCCcc
Q 015243          254 KNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLS  333 (410)
Q Consensus       254 ~~k~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  333 (410)
                      +++++|+|++|+.                                                                 ++
T Consensus       197 ~~~~~p~p~~~~~-----------------------------------------------------------------~~  211 (312)
T cd01489         197 KTRKPPVPLSWKE-----------------------------------------------------------------LT  211 (312)
T ss_pred             cCCCCCCCCCCCC-----------------------------------------------------------------cC
Confidence            9988999984431                                                                 37


Q ss_pred             ccCCcHHHHHHHHHHHHHHHHhcCCCCCChhHHHhhhccccchhhhHHHHHHHHHHHHHHHHHhcCccccccccccC
Q 015243          334 FDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRCGSISL  410 (410)
Q Consensus       334 FeKDDd~hidFI~AasNLRA~ny~I~~~~~~~~k~iag~IiPAiatT~aivagl~~~e~~k~~~~~~~~~r~~~~~l  410 (410)
                      |||||++||+||+|+|||||++|+|+..|++++|+||||||||||||||||||++++|++|++.+..+.+|++|+||
T Consensus       212 fdkDd~~~~~~v~~~a~lRa~~f~I~~~~~~~~k~i~g~IiPaiatTnaivag~~~~e~~k~~~~~~~~~~~~~~~~  288 (312)
T cd01489         212 FDKDDQDALDFVAAAANLRSHVFGIPMKSRFDIKQMAGNIIPAIATTNAIIAGLIVLEALKVLSGDKEQCRTVFLNL  288 (312)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhhhHHHhhhHhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999985

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=100.00  E-value=1.2e-69  Score=509.42  Aligned_cols=233  Identities=50%  Similarity=0.828  Sum_probs=222.4

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCCC
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD   93 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~   93 (410)
                      ||+|||+||+|||++|+|+++|+|+|+|+|+|+|+.|||+|||||+++|+|++|+++++++++++||+++|+++..++.+
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~   80 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP   80 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999854


Q ss_pred             -CcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCCCCCCCCCceeecc
Q 015243           94 -PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITS  172 (410)
Q Consensus        94 -~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~~~~~~~p~cti~~  172 (410)
                       ..++.+|++++|+||+|+||.++|.+++++|+.+++|+|++|+.|+.|+++++.|+.++||.|...+++.++|+||+++
T Consensus        81 ~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G~v~vi~p~~t~c~~C~~~~~~~~~p~Cti~~  160 (234)
T cd01484          81 EQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFKGNAQVILPGMTECIECTLYPPQKNFPMCTIAS  160 (234)
T ss_pred             hhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCceEEEEEcCCCCCCcccCCCCCCCCCCccccCC
Confidence             3456789999999999999999999999999999999999999999999999999999999999988888999999999


Q ss_pred             CCCcchHHHHHHHHHHHHHHhCCCCccccccccCccccchhhHHhhhhcCCcccHHHHHHHHHHhhhcccHHHHhcCCcc
Q 015243          173 TPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASSNEET  252 (410)
Q Consensus       173 ~p~~~~h~i~~a~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~F~~~I~~ll~~~~f  252 (410)
                      +|+.|+|||.||+++ |                                                               
T Consensus       161 ~P~~~~hci~~a~~~-~---------------------------------------------------------------  176 (234)
T cd01484         161 MPRLPEHCIEWARML-Q---------------------------------------------------------------  176 (234)
T ss_pred             CCCCchHHHHHHHHH-H---------------------------------------------------------------
Confidence            999999999999983 0                                                               


Q ss_pred             cCCCCCCCccccCCCCCcchhhhcccccccccccchhhhHHhhhCCCCCCCcccchhchHHHHHHHHHHHHhhhhccCCc
Q 015243          253 WKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNL  332 (410)
Q Consensus       253 w~~k~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  332 (410)
                                                                                                      
T Consensus       177 --------------------------------------------------------------------------------  176 (234)
T cd01484         177 --------------------------------------------------------------------------------  176 (234)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcHHHHHHHHHHHHHHHHhcCCCCCChhHHHhhhccccchhhhHHHHHHHHHHHHHH
Q 015243          333 SFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAI  393 (410)
Q Consensus       333 ~FeKDDd~hidFI~AasNLRA~ny~I~~~~~~~~k~iag~IiPAiatT~aivagl~~~e~~  393 (410)
                       |  ||+.||+||+++||+||++|+|++.|++++|+||||||||||||||||||++|+|++
T Consensus       177 -~--d~~~~~~~i~~~a~~ra~~~~i~~~~~~~~~~i~~~iipai~tTnaiia~~~~~e~~  234 (234)
T cd01484         177 -W--DDPEHIQFIFQASNERASQYNIRGVTYFLTKGVAGRIIPAVATTNAVVAGVCALEVF  234 (234)
T ss_pred             -h--CCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhcCeecchhhHHHHHHHHHHHhhC
Confidence             0  667799999999999999999999999999999999999999999999999999984

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=100.00  E-value=5.8e-66  Score=496.83  Aligned_cols=250  Identities=44%  Similarity=0.758  Sum_probs=230.8

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCCC
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD   93 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~   93 (410)
                      ||+|||+||+|||++|+|+++|||+|+|+|+|+|+.|||+|||||+.+|||++||++++++++++||+++|+++..++.+
T Consensus         1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~   80 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD   80 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999864


Q ss_pred             CcchHhhhccCcEEEEccCChHHHHHHHHHHHHC--------CCcEEEecccCccceEEEEeCCCCccccccCC--CCCC
Q 015243           94 PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA--------DVPLVESGTTGFLGQVTVHVKGKTECYECQPK--PAPK  163 (410)
Q Consensus        94 ~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~--------~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~--~~~~  163 (410)
                        ++.+|++++|+||+|+||.++|+++|+.|.+.        ++|+|++|+.|+.|+++++.|+.|+||+|..+  |++.
T Consensus        81 --~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~~d~~p~~~  158 (291)
T cd01488          81 --KDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECSLDLFPPQV  158 (291)
T ss_pred             --hhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCCCCCccccCCCCCCCCC
Confidence              46799999999999999999999999998764        49999999999999999999999999999976  5667


Q ss_pred             CCCceeeccCCCcchHHHHHHHHHHHHHHhCCCCccccccccCccccchhhHHhhhhcCCcccHHHHHHHHHHhhhcccH
Q 015243          164 TYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNI  243 (410)
Q Consensus       164 ~~p~cti~~~p~~~~h~i~~a~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~F~~~I  243 (410)
                      ++|+||++++|+.++|||+||+.++                                                       
T Consensus       159 ~~p~Cti~~~P~~~~hci~~a~~~~-------------------------------------------------------  183 (291)
T cd01488         159 TFPLCTIANTPRLPEHCIEYASLIQ-------------------------------------------------------  183 (291)
T ss_pred             CCCcccccCCCCCcchheeeeeeee-------------------------------------------------------
Confidence            8999999999999999999999741                                                       


Q ss_pred             HHHhcCCcccCCCCCCCccccCCCCCcchhhhcccccccccccchhhhHHhhhCCCCCCCcccchhchHHHHHHHHHHHH
Q 015243          244 EVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFA  323 (410)
Q Consensus       244 ~~ll~~~~fw~~k~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (410)
                               |+..+ |                                                                
T Consensus       184 ---------~~~~~-~----------------------------------------------------------------  189 (291)
T cd01488         184 ---------WPKEF-P----------------------------------------------------------------  189 (291)
T ss_pred             ---------ccccc-C----------------------------------------------------------------
Confidence                     21100 0                                                                


Q ss_pred             hhhhccCCccccCCcHHHHHHHHHHHHHHHHhcCCCCCChhHHHhhhccccchhhhHHHHHHHHHHHHHHHHHhcCcc
Q 015243          324 KREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTD  401 (410)
Q Consensus       324 ~~~~~~~p~~FeKDDd~hidFI~AasNLRA~ny~I~~~~~~~~k~iag~IiPAiatT~aivagl~~~e~~k~~~~~~~  401 (410)
                             -..||+||+.||+||+..|+.||++|+|+..+++.+++|+|||||||+||||||||+++.|++|++.+...
T Consensus       190 -------~~~~~~d~~~~~~~i~~~a~~ra~~f~i~~~~~~~~~~v~~~iiPai~stnaiia~~~~~~~~k~~~~~~~  260 (291)
T cd01488         190 -------FVPLDGDDPEHIEWLYQKALERAAQFNISGVTYSLTQGVVKRIIPAVASTNAIIAAACCLEALKIATDCYE  260 (291)
T ss_pred             -------CCcCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHhhhHheeeCccCchHHHHHHHHHHHHHHHHhcccc
Confidence                   01699999999999999999999999999999999999999999999999999999999999999998533

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.6e-59  Score=439.77  Aligned_cols=259  Identities=42%  Similarity=0.748  Sum_probs=237.5

Q ss_pred             CHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCC
Q 015243            3 SERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM   82 (410)
Q Consensus         3 g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v   82 (410)
                      ++|..+-|.+.+|+|+|+||+|||++|||+++|++.+++||+|+|+.+||||||||+++|||++||++||+++.+..|..
T Consensus        31 ~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~  110 (422)
T KOG2015|consen   31 SEENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGC  110 (422)
T ss_pred             CHHHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCc
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHH---CC-------CcEEEecccCccceEEEEeCCCCc
Q 015243           83 SITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA---AD-------VPLVESGTTGFLGQVTVHVKGKTE  152 (410)
Q Consensus        83 ~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~---~~-------~p~i~~g~~G~~G~v~~~~~~~t~  152 (410)
                      .|.+|..++++  +..+|+++||+||+++|++++|+++|.+..+   .+       +|+|++|+.|++|++.++.|+.|.
T Consensus       111 ~v~~h~~kIqd--~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~arvI~Pg~Ta  188 (422)
T KOG2015|consen  111 VVVPHRQKIQD--KPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHARVIYPGITA  188 (422)
T ss_pred             EEeeeecchhc--CCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeEEEecCccH
Confidence            99999999954  5789999999999999999999999998765   23       699999999999999999999999


Q ss_pred             cccccCC--CCCCCCCceeeccCCCcchHHHHHHHHHHHHHHhCCCCccccccccCccccchhhHHhhhhcCCcccHHHH
Q 015243          153 CYECQPK--PAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQY  230 (410)
Q Consensus       153 c~~C~~~--~~~~~~p~cti~~~p~~~~h~i~~a~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (410)
                      |++|..+  |++.+||+|||.+.|..|+||++|++-+.|..++                                     
T Consensus       189 CieCtldlyppqvs~P~CTiAntPRlpEHciEyv~liqwpe~~-------------------------------------  231 (422)
T KOG2015|consen  189 CIECTLDLYPPQVSYPMCTIANTPRLPEHCIEYVKLIQWPELN-------------------------------------  231 (422)
T ss_pred             HHHhHHhhcCcccCcccceecCCCCCchHhhhhhhhhcchhhC-------------------------------------
Confidence            9999855  6667899999999999999999998853111100                                     


Q ss_pred             HHHHHHhhhcccHHHHhcCCcccCCCCCCCccccCCCCCcchhhhcccccccccccchhhhHHhhhCCCCCCCcccchhc
Q 015243          231 GRRIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLES  310 (410)
Q Consensus       231 a~~~f~~~F~~~I~~ll~~~~fw~~k~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (410)
                                                  |                                                   
T Consensus       232 ----------------------------~---------------------------------------------------  232 (422)
T KOG2015|consen  232 ----------------------------P---------------------------------------------------  232 (422)
T ss_pred             ----------------------------c---------------------------------------------------
Confidence                                        0                                                   


Q ss_pred             hHHHHHHHHHHHHhhhhccCCccccCCcHHHHHHHHHHHHHHHHhcCCCCCChhHHHhhhccccchhhhHHHHHHHHHHH
Q 015243          311 SRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVI  390 (410)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~p~~FeKDDd~hidFI~AasNLRA~ny~I~~~~~~~~k~iag~IiPAiatT~aivagl~~~  390 (410)
                                         ....+|.||+.||+||+--+|.||..|+|+.+++..+.++..+||||+|||||+||+..+.
T Consensus       233 -------------------~g~~~~gdd~~hI~wi~er~~eRA~ef~I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~  293 (422)
T KOG2015|consen  233 -------------------FGVPLDGDDPEHIEWIVERSNERANEFNITGVTRRLVTGVVKRIIPAVASTNAVIAAVCAT  293 (422)
T ss_pred             -------------------cCCCCCCCCHHHHHHHHHHHHHHhhhcccccchHHhhhhhHHhhcchhhhhhHHHHHHHHH
Confidence                               0125899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc
Q 015243          391 EAIKVLLK  398 (410)
Q Consensus       391 e~~k~~~~  398 (410)
                      |++|++..
T Consensus       294 ea~Kl~t~  301 (422)
T KOG2015|consen  294 EALKLLTA  301 (422)
T ss_pred             HHHHHHHh
Confidence            99999986

>PRK08223 hypothetical protein; Validated

Probab=100.00  E-value=3.3e-38  Score=302.35  Aligned_cols=171  Identities=25%  Similarity=0.363  Sum_probs=156.4

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      +|+++|++|++++|+||||||+||+++++|+++|||+|+|+|+|.|+.|||+||++|+.+|||++|+++++++++++||+
T Consensus        17 iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~   96 (287)
T PRK08223         17 ITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPE   96 (287)
T ss_pred             cCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccCCh--HHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCC
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNL--DARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK  159 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~--~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~  159 (410)
                      ++|+++...+++.+ ..++++++|+||+|+|++  ++|.++|+.|+++++|+|++++.|+.|++.++.|+ ++||+|.++
T Consensus        97 v~V~~~~~~l~~~n-~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~~gqv~v~~p~-~p~~~~~f~  174 (287)
T PRK08223         97 LEIRAFPEGIGKEN-ADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLGMGTALLVFDPG-GMSFDDYFD  174 (287)
T ss_pred             CEEEEEecccCccC-HHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccCCeEEEEEEcCC-CCchhhhcC
Confidence            99999999997654 457899999999999986  89999999999999999999999999999999885 799999865


Q ss_pred             C---C-C---------CCCCceeeccCC
Q 015243          160 P---A-P---------KTYPVCTITSTP  174 (410)
Q Consensus       160 ~---~-~---------~~~p~cti~~~p  174 (410)
                      .   + +         ...|.|.-.+..
T Consensus       175 ~~~~~~~~~~~~~~~~~~~p~c~~~gvl  202 (287)
T PRK08223        175 LSDGMNEVEKAVRFLAGLAPSMLHRGYL  202 (287)
T ss_pred             CCCCCCchhhhcccCCcCCCccccCCcc
Confidence            3   2 2         356777655543

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=100.00  E-value=6.1e-38  Score=289.98  Aligned_cols=171  Identities=30%  Similarity=0.518  Sum_probs=158.8

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      +|++.|++|++++|+|+|+||+|++++++|+++|+++|+|+|+|.|+.+||+||+||+++|+|++|+++++++++++||+
T Consensus        11 ~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~   90 (202)
T TIGR02356        11 IGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSD   90 (202)
T ss_pred             cCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCC-CCccccccCCC
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKG-KTECYECQPKP  160 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~-~t~c~~C~~~~  160 (410)
                      ++++.+...+++.. ..++++++|+||+|+|+.++|.+++++|+++++|+|.+++.|+.|++.++.|+ .++||.|..+.
T Consensus        91 v~i~~~~~~i~~~~-~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~g~~G~~~~~~p~~~~~c~~c~~~~  169 (202)
T TIGR02356        91 IQVTALKERVTAEN-LELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAAVVGFGGQLMVFDPGGEGPCLRCLFPD  169 (202)
T ss_pred             CEEEEehhcCCHHH-HHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCeEEEEEEeCCCCCCChhhcCCC
Confidence            99999998886532 34688999999999999999999999999999999999999999999999988 79999999876


Q ss_pred             CCCCCCceeeccC
Q 015243          161 APKTYPVCTITST  173 (410)
Q Consensus       161 ~~~~~p~cti~~~  173 (410)
                      .+...|.|+....
T Consensus       170 ~~~~~~~~~~~~~  182 (202)
T TIGR02356       170 IADTGPSCATAGV  182 (202)
T ss_pred             CcccCCCCccCCc
Confidence            5556677866543

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=100.00  E-value=7.5e-37  Score=287.94  Aligned_cols=168  Identities=35%  Similarity=0.613  Sum_probs=154.1

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      +|++.|++|++++|+|+||||+||+++++|+++|||+|+|+|+|.|+.+||+||+||.++|+|++|+++++++++++||+
T Consensus        11 ~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~   90 (228)
T cd00757          11 IGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPD   90 (228)
T ss_pred             cCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCCCC
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPA  161 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~~~  161 (410)
                      ++|+.+...+++.. ..++++++|+||+|+|+.++|.+++++|+++++|+|++|+.|+.|++.++.|+.++||.|.....
T Consensus        91 ~~i~~~~~~i~~~~-~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~g~~g~v~~~~p~~~~c~~c~~~~~  169 (228)
T cd00757          91 VEIEAYNERLDAEN-AEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGFEGQVTVFIPGEGPCYRCLFPEP  169 (228)
T ss_pred             CEEEEecceeCHHH-HHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEECCCCCCCccccCCCC
Confidence            99999998885432 35688999999999999999999999999999999999999999999999999999999987644


Q ss_pred             CCC-CCceee
Q 015243          162 PKT-YPVCTI  170 (410)
Q Consensus       162 ~~~-~p~cti  170 (410)
                      +.. .+.|..
T Consensus       170 ~~~~~~~~~~  179 (228)
T cd00757         170 PPPGVPSCAE  179 (228)
T ss_pred             CCCCCCcccc
Confidence            322 244543

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=100.00  E-value=4.4e-37  Score=292.11  Aligned_cols=167  Identities=33%  Similarity=0.583  Sum_probs=153.4

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      +|.++|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|.|+.|||+||+||+++|+|++|+++++++++++||+
T Consensus        22 ~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~  101 (245)
T PRK05690         22 FDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPH  101 (245)
T ss_pred             cCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCC-CccccccCCC
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGK-TECYECQPKP  160 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~-t~c~~C~~~~  160 (410)
                      ++|+++...+++.. ..++++++|+||+|+||.++|.+++++|+++++|+|.+++.|+.|++.++.|+. ++||.|..+.
T Consensus       102 v~i~~~~~~i~~~~-~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~~~~~~~~~~c~~c~~~~  180 (245)
T PRK05690        102 IAIETINARLDDDE-LAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGAAIRMEGQVTVFTYQDDEPCYRCLSRL  180 (245)
T ss_pred             CEEEEEeccCCHHH-HHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEeeeccCCceEEEEecCCCCceeeeccCC
Confidence            99999999886532 357899999999999999999999999999999999999999999999998765 8999999764


Q ss_pred             CCCCCCcee
Q 015243          161 APKTYPVCT  169 (410)
Q Consensus       161 ~~~~~p~ct  169 (410)
                      .+.....|.
T Consensus       181 ~~~~~~~~~  189 (245)
T PRK05690        181 FGENALTCV  189 (245)
T ss_pred             CCCCCCCcc
Confidence            443333454

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=100.00  E-value=6.9e-37  Score=294.65  Aligned_cols=177  Identities=20%  Similarity=0.455  Sum_probs=162.0

Q ss_pred             CCCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC
Q 015243            1 MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP   80 (410)
Q Consensus         1 ~~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np   80 (410)
                      .+|+++|+||++++|+|+|+||+|+|++|||+++||++|+|+|+|.|+.+||+|||+|+++|||++|+++++++|+++||
T Consensus         8 ~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp   87 (286)
T cd01491           8 VLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNP   87 (286)
T ss_pred             ccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCC
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCCC
Q 015243           81 QMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP  160 (410)
Q Consensus        81 ~v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~~  160 (410)
                      +++|+.+...+     +.+++.++|+||+|.|+.+++.++|++|+++++|+|.+++.|+.|++++..+....|+++ .++
T Consensus        88 ~V~V~~~~~~~-----~~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~G~~G~vf~dfg~~f~~~d~-~ge  161 (286)
T cd01491          88 YVPVTVSTGPL-----TTDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISADTRGLFGSIFCDFGDEFTVYDP-NGE  161 (286)
T ss_pred             CCEEEEEeccC-----CHHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEeccccEEEEEecCCCeEEEeCC-CCC
Confidence            99999998764     457899999999999999999999999999999999999999999999977655555542 235


Q ss_pred             CCCCCCceeeccCCCcchHHHHH
Q 015243          161 APKTYPVCTITSTPSKFVHCIVW  183 (410)
Q Consensus       161 ~~~~~p~cti~~~p~~~~h~i~~  183 (410)
                      +|.++++|+|.+.+...+||+.-
T Consensus       162 ~p~~~~i~~I~~~~~g~V~~~~~  184 (286)
T cd01491         162 EPKSGMISSISKDNPGVVTCLDE  184 (286)
T ss_pred             cCCccceeeeecCCceEEEEECC
Confidence            67889999999988889998653

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK07411 hypothetical protein; Validated

Probab=100.00  E-value=9.1e-37  Score=307.99  Aligned_cols=190  Identities=28%  Similarity=0.442  Sum_probs=166.1

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      +|.++|++|++++|+||||||+||+++++|+++|||+|+|+|+|+|+.|||+||+||+.+|+|++|+++++++++++||+
T Consensus        28 ~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~  107 (390)
T PRK07411         28 VGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPY  107 (390)
T ss_pred             cCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCCCC
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPA  161 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~~~  161 (410)
                      ++|+++..+++.. ...++++++|+||+|+||.++|.++|++|+++++|++.+++.|+.|++.++.++.++||+|..+..
T Consensus       108 v~v~~~~~~~~~~-~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~g~~~v~~~~~~~c~~c~~~~~  186 (390)
T PRK07411        108 CQVDLYETRLSSE-NALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRFEGQATVFNYEGGPNYRDLYPEP  186 (390)
T ss_pred             CeEEEEecccCHH-hHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccCEEEEEEECCCCCCChHHhcCCC
Confidence            9999999998754 245789999999999999999999999999999999999999999999988877899999997632


Q ss_pred             --CCCCCceeeccCCCcc---hHHHHHHHHHHHHHHhC
Q 015243          162 --PKTYPVCTITSTPSKF---VHCIVWAKDLLFAKLFG  194 (410)
Q Consensus       162 --~~~~p~cti~~~p~~~---~h~i~~a~~~~f~~~f~  194 (410)
                        +...|.|.........   +-++ -|.+ ..+.+.+
T Consensus       187 ~~~~~~~~c~~~gvlg~~~~~~g~~-~a~e-aik~l~g  222 (390)
T PRK07411        187 PPPGMVPSCAEGGVLGILPGIIGVI-QATE-TIKIILG  222 (390)
T ss_pred             CCcccCCCCccCCcCcchHHHHHHH-HHHH-HHHHHcC
Confidence              3445778755433322   2222 2555 4666665

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=100.00  E-value=3.1e-36  Score=300.72  Aligned_cols=191  Identities=29%  Similarity=0.432  Sum_probs=167.4

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      +|.++|++|++++|+|+||||+||+++++|+++|||+|+|+|+|.|+.|||+||+||+++|+|++|+++++++|+++||+
T Consensus        18 ~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~   97 (355)
T PRK05597         18 IGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPD   97 (355)
T ss_pred             cCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCCCC
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPA  161 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~~~  161 (410)
                      ++|+++..+++.. ...++++++|+||+|+||.++|..+|+.|+++++|+|.+++.|+.|++.++.|+.++||+|..+..
T Consensus        98 v~v~~~~~~i~~~-~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~~g~v~~~~~~~~~~~~~~~~~~  176 (355)
T PRK05597         98 VKVTVSVRRLTWS-NALDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWASILGFDAQLSVFHAGHGPIYEDLFPTP  176 (355)
T ss_pred             cEEEEEEeecCHH-HHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCeEEEEEEcCCCCCCHHHhCCCC
Confidence            9999999888653 235789999999999999999999999999999999999999999999999888899999997533


Q ss_pred             --CCCCCceeeccCCCc--chHHHHHHHHHHHHHHhC
Q 015243          162 --PKTYPVCTITSTPSK--FVHCIVWAKDLLFAKLFG  194 (410)
Q Consensus       162 --~~~~p~cti~~~p~~--~~h~i~~a~~~~f~~~f~  194 (410)
                        +...|.|+.......  ......-|.| ..+.+.+
T Consensus       177 ~~~~~~~~c~~~gv~g~~~~~~g~~~a~e-~ik~l~g  212 (355)
T PRK05597        177 PPPGSVPSCSQAGVLGPVVGVVGSAMAME-ALKLITG  212 (355)
T ss_pred             CCccCCCCccccCcchhHHHHHHHHHHHH-HHHHHhC
Confidence              346678876554332  2222233555 5666665

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=100.00  E-value=6.1e-36  Score=283.20  Aligned_cols=157  Identities=34%  Similarity=0.658  Sum_probs=146.9

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      +|+++|++|++++|+|+|+||+||+++++|+++|||+|+|+|.|.|+.+||+||+||.++|+|++|+++++++++++||+
T Consensus        14 ~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~   93 (240)
T TIGR02355        14 FDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPH   93 (240)
T ss_pred             CCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCC
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEe-CCCCccccccCC
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHV-KGKTECYECQPK  159 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~-~~~t~c~~C~~~  159 (410)
                      ++|+++...+++.. ..++++++|+||+|+||.++|.+++++|+++++|+|.+++.|+.|++.++. +..++||.|..+
T Consensus        94 v~i~~~~~~i~~~~-~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~~~~~~~~~~c~~C~~~  171 (240)
T TIGR02355        94 IAINPINAKLDDAE-LAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIRMEGQVSVFTYQDGEPCYRCLSR  171 (240)
T ss_pred             cEEEEEeccCCHHH-HHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEeEEEEEecCCCCCccccccc
Confidence            99999998886532 457899999999999999999999999999999999999999999988765 456899999854

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK08328 hypothetical protein; Provisional

Probab=100.00  E-value=6.6e-36  Score=281.77  Aligned_cols=159  Identities=31%  Similarity=0.431  Sum_probs=150.6

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCc-hHHHHHHHHHHhhCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQ-SKAKVARDAVLKFRP   80 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~-~Ka~~a~~~l~~~np   80 (410)
                      +|.++|++|++++|+|+||||+||+++++|+++|||+|+|+|+|.|+.|||+||++|+++|+|+ +|+++++++++++||
T Consensus        17 ~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np   96 (231)
T PRK08328         17 FGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNS   96 (231)
T ss_pred             cCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCC
Confidence            7999999999999999999999999999999999999999999999999999999999999999 599999999999999


Q ss_pred             CCeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCCC
Q 015243           81 QMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP  160 (410)
Q Consensus        81 ~v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~~  160 (410)
                      +++|+++...+++.. ..++++++|+||+|+||.++|..++++|+++++|+|++++.|+.|++.++.|+.++||+|..+.
T Consensus        97 ~v~v~~~~~~~~~~~-~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~g~~G~v~~~~p~~~~c~~~~~~~  175 (231)
T PRK08328         97 DIKIETFVGRLSEEN-IDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQVTTIVPGKTKRLREIFPK  175 (231)
T ss_pred             CCEEEEEeccCCHHH-HHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeeccCEEEEEEECCCCCCCHHHhCCC
Confidence            999999998886544 3568999999999999999999999999999999999999999999999999999999999764


Q ss_pred             C
Q 015243          161 A  161 (410)
Q Consensus       161 ~  161 (410)
                      .
T Consensus       176 ~  176 (231)
T PRK08328        176 V  176 (231)
T ss_pred             C
Confidence            3

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=100.00  E-value=2.2e-35  Score=298.42  Aligned_cols=170  Identities=33%  Similarity=0.523  Sum_probs=155.2

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      +|.++|++|++++|+||||||+||+++++|+++|||+|+|+|+|.|+.+||+||++|+.+|||++|+++++++|+++||+
T Consensus        32 ~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~  111 (392)
T PRK07878         32 VGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPL  111 (392)
T ss_pred             cCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeC----CCCcccccc
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVK----GKTECYECQ  157 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~----~~t~c~~C~  157 (410)
                      ++|+++..+++.. ...++++++|+||+|+||..+|.++|++|+++++|+|.+++.|+.|++.++.+    +.++||+|.
T Consensus       112 v~i~~~~~~i~~~-~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~G~v~~~~~~~~~~~~~c~~c~  190 (392)
T PRK07878        112 VNVRLHEFRLDPS-NAVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSIYRFEGQASVFWEDAPDGLGLNYRDL  190 (392)
T ss_pred             cEEEEEeccCChh-HHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEEecCCCCCCCCeeeee
Confidence            9999999888654 34578999999999999999999999999999999999999999999998864    368999999


Q ss_pred             CCCCC--CCCCceeecc
Q 015243          158 PKPAP--KTYPVCTITS  172 (410)
Q Consensus       158 ~~~~~--~~~p~cti~~  172 (410)
                      .+..+  ...|.|.-..
T Consensus       191 ~~~~~~~~~~~~~~~~g  207 (392)
T PRK07878        191 YPEPPPPGMVPSCAEGG  207 (392)
T ss_pred             cCCCCCccCCCCCccCC
Confidence            76432  3457776443

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=100.00  E-value=6.9e-35  Score=288.77  Aligned_cols=170  Identities=27%  Similarity=0.452  Sum_probs=155.6

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCC--chHHHHHHHHHHhhC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVG--QSKAKVARDAVLKFR   79 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG--~~Ka~~a~~~l~~~n   79 (410)
                      +|+++|++|++++|+|||+||+||+++++|+++|||+|+|+|.|.||.|||+||+||+++|+|  ++|+++++++++++|
T Consensus        14 ~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~in   93 (338)
T PRK12475         14 IGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKIN   93 (338)
T ss_pred             cCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHC
Confidence            699999999999999999999999999999999999999999999999999999999999985  899999999999999


Q ss_pred             CCCeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCC
Q 015243           80 PQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK  159 (410)
Q Consensus        80 p~v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~  159 (410)
                      |+++|+++..+++.. ...++++++|+||+|+||.++|..+|++|+++++|+|.+++.|+.|++.++.|+.++||.|..+
T Consensus        94 p~v~i~~~~~~~~~~-~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~g~~G~~~~~~P~~tpC~~Cl~~  172 (338)
T PRK12475         94 SEVEIVPVVTDVTVE-ELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVGSYGVTYTIIPGKTPCLRCLME  172 (338)
T ss_pred             CCcEEEEEeccCCHH-HHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEEEEEEECCCCCCCHHHhcC
Confidence            999999998888643 2356789999999999999999999999999999999999999999999999999999999976


Q ss_pred             CCCCCCCceeecc
Q 015243          160 PAPKTYPVCTITS  172 (410)
Q Consensus       160 ~~~~~~p~cti~~  172 (410)
                      ..|...+.|....
T Consensus       173 ~~p~~~~~c~~~G  185 (338)
T PRK12475        173 HVPVGGATCDTAG  185 (338)
T ss_pred             CCCCCCCCCccCC
Confidence            5444445675443

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=100.00  E-value=1.4e-34  Score=289.74  Aligned_cols=191  Identities=28%  Similarity=0.455  Sum_probs=164.2

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      +|+++|++|++++|+|+|+||+||+++++|+++|||+|+|+|.|.|+.|||+||+||+++|+|++|+++++++++++||+
T Consensus        31 ~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~  110 (370)
T PRK05600         31 FGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPD  110 (370)
T ss_pred             hCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCC---CCccccccC
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKG---KTECYECQP  158 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~---~t~c~~C~~  158 (410)
                      ++|+++..++++.. ..++++++|+||+|+||.++|.++|+.|+++++|+|.+++.|+.|++.++.|+   .++||+|.+
T Consensus       111 v~i~~~~~~i~~~~-~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~~g~~G~v~v~~~~~~~~~~~~~~l~  189 (370)
T PRK05600        111 IRVNALRERLTAEN-AVELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVWGTVLRFHGELAVFNSGPDHRGVGLRDLF  189 (370)
T ss_pred             CeeEEeeeecCHHH-HHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCEEEEEEEecCCCCCCCCcHhhC
Confidence            99999999987543 45789999999999999999999999999999999999999999999988765   378999997


Q ss_pred             CCC--CCCCCceeeccCCCc--chHHHHHHHHHHHHHHhC
Q 015243          159 KPA--PKTYPVCTITSTPSK--FVHCIVWAKDLLFAKLFG  194 (410)
Q Consensus       159 ~~~--~~~~p~cti~~~p~~--~~h~i~~a~~~~f~~~f~  194 (410)
                      +..  +...|.|+.......  .+....-|.+ ..+.+.+
T Consensus       190 ~~~~~~~~~~~c~~~gvlg~~~~~ig~~~a~e-aik~l~g  228 (370)
T PRK05600        190 PEQPSGDSIPDCATAGVLGATTAVIGALMATE-AIKFLTG  228 (370)
T ss_pred             CCCCccccCCCCccCCcchhHHHHHHHHHHHH-HHHHHhC
Confidence            643  234577854432221  1222233555 5666665

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=100.00  E-value=1e-34  Score=267.16  Aligned_cols=143  Identities=26%  Similarity=0.490  Sum_probs=137.4

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      +|+++|++|++++|+|+|+||+|||++|+|+++||++|+|+|+|.|+.+||+|||||+.+|+|++|+++++++++++||+
T Consensus        11 ~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~   90 (197)
T cd01492          11 WGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPR   90 (197)
T ss_pred             hCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEE
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVH  146 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~  146 (410)
                      ++|+.+...+++  ...++++++|+||+|+|+.++|.+++++|+++++|++.+++.|+.|+++.+
T Consensus        91 v~i~~~~~~~~~--~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~d  153 (197)
T cd01492          91 VKVSVDTDDISE--KPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLFGFVFAD  153 (197)
T ss_pred             CEEEEEecCccc--cHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCCEEEEEEe
Confidence            999999888863  357899999999999999999999999999999999999999999998865

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=100.00  E-value=1.6e-34  Score=286.19  Aligned_cols=168  Identities=25%  Similarity=0.422  Sum_probs=155.0

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCC--chHHHHHHHHHHhhC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVG--QSKAKVARDAVLKFR   79 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG--~~Ka~~a~~~l~~~n   79 (410)
                      +|+++|++|++++|+||||||+||+++++|+++|||+|+|+|.|.|+.+||+||+||+++|+|  ++|+++++++++++|
T Consensus        14 ~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~in   93 (339)
T PRK07688         14 IGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEIN   93 (339)
T ss_pred             cCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHC
Confidence            799999999999999999999999999999999999999999999999999999999999994  699999999999999


Q ss_pred             CCCeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCC
Q 015243           80 PQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK  159 (410)
Q Consensus        80 p~v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~  159 (410)
                      |+++++++..++++.+ ..++++++|+||+|+||+++|..+|++|+++++|+|.+++.|+.|++.++.|+.++||.|..+
T Consensus        94 p~v~v~~~~~~~~~~~-~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~~g~~G~~~~~~p~~~pC~~Cl~~  172 (339)
T PRK07688         94 SDVRVEAIVQDVTAEE-LEELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGACVGSYGLSYTIIPGKTPCLRCLLQ  172 (339)
T ss_pred             CCcEEEEEeccCCHHH-HHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeeeeeeeEEEEECCCCCCCeEeecC
Confidence            9999999998886543 346789999999999999999999999999999999999999999999999999999999976


Q ss_pred             CCCCCCCceee
Q 015243          160 PAPKTYPVCTI  170 (410)
Q Consensus       160 ~~~~~~p~cti  170 (410)
                      ..+...+.|.-
T Consensus       173 ~~~~~~~~c~~  183 (339)
T PRK07688        173 SIPLGGATCDT  183 (339)
T ss_pred             CCCCCCCCCcc
Confidence            55544466753

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=100.00  E-value=3.5e-34  Score=263.97  Aligned_cols=146  Identities=23%  Similarity=0.495  Sum_probs=137.5

Q ss_pred             CCCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCC--CCCCchHHHHHHHHHHhh
Q 015243            1 MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ--SHVGQSKAKVARDAVLKF   78 (410)
Q Consensus         1 ~~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~--~diG~~Ka~~a~~~l~~~   78 (410)
                      .+|+++|++|++++|+|+|+||+|||++|+|+++||++|+|+|+|.|+.+||+|||||++  +|+|++|+++++++|+++
T Consensus         8 l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~l   87 (198)
T cd01485           8 LWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQEL   87 (198)
T ss_pred             ccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHH
Confidence            379999999999999999999999999999999999999999999999999999999998  899999999999999999


Q ss_pred             CCCCeEEEEccCCCC-CcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEE
Q 015243           79 RPQMSITAHHANVKD-PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVH  146 (410)
Q Consensus        79 np~v~i~~~~~~i~~-~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~  146 (410)
                      ||+++|+++...+.+ .....++++++|+||+|.|+.+++.+++++|+++++|++.+++.|+.|+++++
T Consensus        88 Np~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~~  156 (198)
T cd01485          88 NPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGLIGYAFFD  156 (198)
T ss_pred             CCCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEEc
Confidence            999999999887742 23456889999999999999999999999999999999999999999998865

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=100.00  E-value=1.7e-33  Score=291.71  Aligned_cols=238  Identities=21%  Similarity=0.287  Sum_probs=185.4

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCC---CchHHHHHHHHHHhh
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV---GQSKAKVARDAVLKF   78 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~di---G~~Ka~~a~~~l~~~   78 (410)
                      +++-+.++|++++|+||||||+||+++++|+++|||+|+|+|+|+|+.|||+||+||+.+|+   |++||++|+++|+++
T Consensus       328 lP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~I  407 (664)
T TIGR01381       328 HPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRI  407 (664)
T ss_pred             CChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHH
Confidence            56667799999999999999999999999999999999999999999999999999999999   999999999999999


Q ss_pred             CCCCeEEEEccCC-------CCC---------cchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccce
Q 015243           79 RPQMSITAHHANV-------KDP---------KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQ  142 (410)
Q Consensus        79 np~v~i~~~~~~i-------~~~---------~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~  142 (410)
                      ||+++++++..++       ++.         ....++++++|+|++|+||.++|..++.+|..+++|+|+++ .|+.|+
T Consensus       408 nP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~~kplI~aA-lGfdg~  486 (664)
T TIGR01381       408 FPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSRHKKIAISAA-LGFDSY  486 (664)
T ss_pred             CCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEE-eccceE
Confidence            9999999998774       321         12346889999999999999999999999999999999985 899999


Q ss_pred             EEEEeC------------------CCCccccccC---CCCCCCC----CceeeccCCCcchHHHHHHHHHHHHHHhCCCC
Q 015243          143 VTVHVK------------------GKTECYECQP---KPAPKTY----PVCTITSTPSKFVHCIVWAKDLLFAKLFGDKN  197 (410)
Q Consensus       143 v~~~~~------------------~~t~c~~C~~---~~~~~~~----p~cti~~~p~~~~h~i~~a~~~~f~~~f~~~~  197 (410)
                      +....+                  ...+||.|..   +.++...    ..||+.. |....-+-..|.|+ +..+...+.
T Consensus       487 lvmrhG~~~~~~~~~~~~~~~~~~~~~gCYfC~Dv~aP~~s~~~rtlDqqCtVtr-Pgv~~ias~~AvEl-l~~llqhp~  564 (664)
T TIGR01381       487 VVMRHGIGRSESVSDVSSSDSVPYSRLGCYFCNDVTAPGDSTTDRTLDQQCTVTR-PGTAMIASGLAVEL-LVSVLQHPL  564 (664)
T ss_pred             EEEEecccccccccccccccccCCCCCCccccCCCCCCCcccccccccccceEec-chHHHHHHHHHHHH-HHHHhcCCc
Confidence            887622                  2578999993   3333333    6899654 55445555678884 555433221


Q ss_pred             cc-c--ccc-ccCccccchhhHHhhhh--------cCCcccHHHHHHHHHHhhhccc
Q 015243          198 QE-N--DLN-VRSSDASSSAHAEDVFV--------RRKDEDIDQYGRRIYDHVFGYN  242 (410)
Q Consensus       198 ~~-~--~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~~~~a~~~f~~~F~~~  242 (410)
                      .. .  ... ........+++++.++.        ...++.|+.+...+..+|-.+.
T Consensus       565 ~~~ap~~~~~~~~~lG~~Phqirg~l~~f~~~~~~~~~~~~C~aCs~~v~~~y~~~g  621 (664)
T TIGR01381       565 PSKTPASHDDNTTVLGALPHQIRGFLGRFQQILLSVKRFDQCVACSDAVAAEYQQRG  621 (664)
T ss_pred             ccCCCCcCCCCCCccccCCceeeeehhhCeeeeecccCCCcccCCCHHHHHHHHhcc
Confidence            11 0  001 01222336777776653        2467899999888887766654

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]

Probab=100.00  E-value=2.9e-33  Score=267.75  Aligned_cols=161  Identities=41%  Similarity=0.711  Sum_probs=152.8

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      +|.++|++|+.++|+|+|+||+||+++++|+++|+|+++|+|.|+|+.+||+||++|+.+|+|++|++++++.++++||.
T Consensus        20 ~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~dig~~Ka~~a~~~l~~ln~~   99 (254)
T COG0476          20 IGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADVGKPKAEVAAKALRKLNPL   99 (254)
T ss_pred             cCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeecccccCCcHHHHHHHHHHHhCCC
Confidence            46677999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCC-CCccccccCCC
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKG-KTECYECQPKP  160 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~-~t~c~~C~~~~  160 (410)
                      ++++++...++.... .+++.++|+|++|+||.++|..+|+.|++.++|++++++.|+.|++.++.|+ .++||+|..+.
T Consensus       100 v~v~~~~~~l~~~~~-~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pli~~~~~~~~g~~~~~~~~~~~~c~~~~~~~  178 (254)
T COG0476         100 VEVVAYLERLDEENA-EELIAQFDVVLDCTDNFETRYLINDACVKLGIPLVHGGAIGFEGQVTVIIPGDKTPCYRCLFPE  178 (254)
T ss_pred             CeEEEeecccChhhH-HHHhccCCEEEECCCCHHHHHHHHHHHHHhCCCeEeeeeccceEEEEEEecCCCCCcccccCCC
Confidence            999999999877655 7899999999999999999999999999999999999999999999999999 59999999775


Q ss_pred             CCC
Q 015243          161 APK  163 (410)
Q Consensus       161 ~~~  163 (410)
                      .+.
T Consensus       179 ~~~  181 (254)
T COG0476         179 KPP  181 (254)
T ss_pred             CCC
Confidence            543

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=100.00  E-value=5.1e-33  Score=280.19  Aligned_cols=191  Identities=30%  Similarity=0.510  Sum_probs=164.8

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      +|.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+.+||+||+||+++|||++|+++++++++++||+
T Consensus       125 ~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~  204 (376)
T PRK08762        125 VGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPD  204 (376)
T ss_pred             cCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCC----Ccccccc
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGK----TECYECQ  157 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~----t~c~~C~  157 (410)
                      ++++.+...+++.. ..++++++|+||+|+|+.++|.+++++|+++++|+|.+++.|+.|++.++.|+.    ++||+|.
T Consensus       205 v~v~~~~~~~~~~~-~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~g~~g~v~~~~p~~~~~~~~c~~c~  283 (376)
T PRK08762        205 VQVEAVQERVTSDN-VEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVFRFEGQVSVFDAGRQRGQAPCYRCL  283 (376)
T ss_pred             CEEEEEeccCChHH-HHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEEeCCCCCCCCCCHhhc
Confidence            99999988886532 346789999999999999999999999999999999999999999999998876    8999998


Q ss_pred             CCCC--CCCCCceeeccCCCcc--hHHHHHHHHHHHHHHhC
Q 015243          158 PKPA--PKTYPVCTITSTPSKF--VHCIVWAKDLLFAKLFG  194 (410)
Q Consensus       158 ~~~~--~~~~p~cti~~~p~~~--~h~i~~a~~~~f~~~f~  194 (410)
                      .+..  +...|.|.........  +-...-|.| ..+.+.+
T Consensus       284 ~~~~~~~~~~~~~~~~gv~g~~~~~~~~~~a~e-~~k~l~g  323 (376)
T PRK08762        284 FPEPPPPELAPSCAEAGVLGVLPGVIGLLQATE-AIKLLLG  323 (376)
T ss_pred             CCCCCCcccCCCCccCCcchhhHHHHHHHHHHH-HHHHHhC
Confidence            6532  2335778765443222  122234555 5676765

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=100.00  E-value=6.1e-33  Score=266.02  Aligned_cols=227  Identities=21%  Similarity=0.286  Sum_probs=175.9

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCC--CCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSH--VGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~d--iG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      ||+|+|+||+||+++++|+++|||+|+|+|+|.|+.+||+||+||+.+|  +|++|+++++++|+++||+++++++...+
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I   80 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI   80 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence            6999999999999999999999999999999999999999999999999  99999999999999999999999987665


Q ss_pred             C----------------CCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCC------
Q 015243           92 K----------------DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKG------  149 (410)
Q Consensus        92 ~----------------~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~------  149 (410)
                      .                +.....++++++|+|++|+||.++|+.++.+|..+++|+|++ ..|+.|++....+.      
T Consensus        81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~a-alGfdg~lvmrhg~~~~~~~  159 (307)
T cd01486          81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVINA-ALGFDSYLVMRHGAGPQSQS  159 (307)
T ss_pred             cccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEEE-EeccceEEEEEeCCCccccc
Confidence            1                111235788999999999999999999999999999999985 67999998776432      


Q ss_pred             -------------CCccccccCCCCCCC-------CCceeeccCCCcchHHHHHHHHHHHHHHhCCCCccc--cc-----
Q 015243          150 -------------KTECYECQPKPAPKT-------YPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQEN--DL-----  202 (410)
Q Consensus       150 -------------~t~c~~C~~~~~~~~-------~p~cti~~~p~~~~h~i~~a~~~~f~~~f~~~~~~~--~~-----  202 (410)
                                   ...||.|..--.|..       -.+||++. |.-.--+-..|.|++-..+++......  ..     
T Consensus       160 ~~~~~~~~~~~~~~lgCYfCnDv~ap~~s~~drtlDqqctvtr-pG~a~ias~~avEl~~s~lqhp~~~~a~~~~~~~~~  238 (307)
T cd01486         160 GSGDSSSDSIPGSRLGCYFCNDVVAPGDSLKDRTLDQQCTVTR-PGLSMIASSIAVELLVSLLQHPLGGHAPAESSSNEG  238 (307)
T ss_pred             ccccccccccCCCCcceeeeCCEecCCCCCCCcccCcccceec-CchHHHHHHHHHHHHHHHHcCCCccCCCCccccccC
Confidence                         478999986533321       26799876 555555567899965555554221110  00     


Q ss_pred             -cccCccccchhhHHhhhh--------cCCcccHHHHHHHHHHhhhccc
Q 015243          203 -NVRSSDASSSAHAEDVFV--------RRKDEDIDQYGRRIYDHVFGYN  242 (410)
Q Consensus       203 -~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~a~~~f~~~F~~~  242 (410)
                       .........+++++.++.        ...++.|..+...+.++|-.+.
T Consensus       239 ~~~~~~lg~~Phqirg~l~~~~~~~~~~~~~~~C~aCs~~v~~~y~~~g  287 (307)
T cd01486         239 DEPTTVLGILPHQIRGFLSNFSNLTLSGQAYDQCTACSDAVIDEYHREG  287 (307)
T ss_pred             CCCCCcCccCCeeeeeehhhCeeeeecccCCCccccCCHHHHHHHHhcc
Confidence             011122236777776653        2457899998888888776655

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=100.00  E-value=2.9e-31  Score=268.90  Aligned_cols=157  Identities=23%  Similarity=0.396  Sum_probs=144.8

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      .|.++|++|++++|+|+|+||+|||++|||+++|||+|+|+|+|.|+.+||+|||+++.+|+|++||+++++.|+++||+
T Consensus        10 wG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~   89 (425)
T cd01493          10 WGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPD   89 (425)
T ss_pred             hHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEccCCCCC-cchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCC
Q 015243           82 MSITAHHANVKDP-KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK  159 (410)
Q Consensus        82 v~i~~~~~~i~~~-~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~  159 (410)
                      ++++.+...+.+. ..+.+|++++|+||++.++...+..++++|+++++|+|.+++.|+.|++++..|. +.+.++.++
T Consensus        90 V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~~G~v~v~~~~-h~i~et~p~  167 (425)
T cd01493          90 VNGSAVEESPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLYVRSYGLYGYIRIQLKE-HTIVESHPD  167 (425)
T ss_pred             CEEEEEecccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEecccCEEEEEEEECC-eEEEECCCC
Confidence            9999998877432 2346899999999999999999999999999999999999999999999999985 446666544

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=99.98  E-value=5.2e-32  Score=255.03  Aligned_cols=179  Identities=25%  Similarity=0.331  Sum_probs=151.4

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCC-----C-----cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGF-----Q-----DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR   79 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv-----~-----~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~n   79 (410)
                      -+..+|+||||||+||+++++|+++|+     |     +|+|+|+|+|+.|||+|| +|..+|||++|++++++++.+++
T Consensus         9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ-lf~~~dVG~~Ka~v~~~ri~~~~   87 (244)
T TIGR03736         9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ-AFYPADVGQNKAIVLVNRLNQAM   87 (244)
T ss_pred             hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc-cCChhHCCcHHHHHHHHHHHhcc
Confidence            378999999999999999999999973     4     899999999999999999 57889999999999999999988


Q ss_pred             CCCeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHH--C-CCcEEEecc--------cCc-----cceE
Q 015243           80 PQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA--A-DVPLVESGT--------TGF-----LGQV  143 (410)
Q Consensus        80 p~v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~--~-~~p~i~~g~--------~G~-----~G~v  143 (410)
                       +++++++...+.+    ..++.++|+||+|+||.++|.++++.|.+  + .+||+++|+        .|.     +|+.
T Consensus        88 -~~~i~a~~~~~~~----~~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~g~i~~~~k~~~  162 (244)
T TIGR03736        88 -GTDWTAHPERVER----SSTLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQVILGQVPSRAKGEN  162 (244)
T ss_pred             -CceEEEEEeeeCc----hhhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcEEEEecccccccCC
Confidence             8999999988865    24467899999999999999999999988  3 489999998        455     6777


Q ss_pred             EEEeCCCCccccccCCC---CCCCCCceeeccCCCcc-----hHHHHHHHHHHHHHHhC
Q 015243          144 TVHVKGKTECYECQPKP---APKTYPVCTITSTPSKF-----VHCIVWAKDLLFAKLFG  194 (410)
Q Consensus       144 ~~~~~~~t~c~~C~~~~---~~~~~p~cti~~~p~~~-----~h~i~~a~~~~f~~~f~  194 (410)
                      .+++|+.|+||.|..++   ++.+.|+||+...-...     .....+|..+||+.+..
T Consensus       163 ~~~lP~vte~y~~~~d~~~~~~~~~PsCsla~al~~Q~l~iN~~~a~~~~~~L~~lf~~  221 (244)
T TIGR03736       163 RLRLPHVGELFPELIDPSVDPDDDRPSCSLAEALAKQSLFINQAIAVFAMNLLWKLFRK  221 (244)
T ss_pred             ceecCCchhhCcccccCccCCCCCCCCchHHHHhcCchhHHHHHHHHHHHHHHHHHHhc
Confidence            78889999999998776   66789999987533321     22355778877876643

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=99.98  E-value=5.1e-33  Score=264.72  Aligned_cols=167  Identities=29%  Similarity=0.529  Sum_probs=155.7

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      ||..+|.+|++++|+||||||+||..+..|+.+|+|+|-|+|.|.||.+||.||.+++++.+|+.|+++|+..++++||+
T Consensus        56 ~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg~~Ka~sA~~~lr~lNs~  135 (427)
T KOG2017|consen   56 FGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTEARVGMHKAESAAAFLRRLNSH  135 (427)
T ss_pred             cccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhhhhhhhHHHHHHHHHHHhcCCC
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCCCC
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPA  161 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~~~  161 (410)
                      ++|..|...++..+ ..+++++||+|++|+||+.+|+.+++.|+..++|++.+...++.||+.+..-...|||+|.++.+
T Consensus       136 v~v~~y~~~L~~sN-a~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSaLr~EGQLtvYny~~GPCYRClFP~P  214 (427)
T KOG2017|consen  136 VEVQTYNEFLSSSN-AFDIIKQYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSALRWEGQLTVYNYNNGPCYRCLFPNP  214 (427)
T ss_pred             ceeeechhhccchh-HHHHhhccceEEEcCCCccchhhhhhHHHHcCCcccccccccccceeEEeecCCCceeeecCCCC
Confidence            99999999886543 45789999999999999999999999999999999999999999999999778899999997643


Q ss_pred             C--CCCCcee
Q 015243          162 P--KTYPVCT  169 (410)
Q Consensus       162 ~--~~~p~ct  169 (410)
                      |  .....|.
T Consensus       215 pp~~~vt~C~  224 (427)
T KOG2017|consen  215 PPPEAVTNCA  224 (427)
T ss_pred             cChHHhcccc
Confidence            3  3566676

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=99.98  E-value=6.9e-32  Score=253.45  Aligned_cols=139  Identities=27%  Similarity=0.396  Sum_probs=129.2

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      +|+++|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|.|+.+|||||+++..+|+|++|+++++++++++||+
T Consensus         1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~   80 (231)
T cd00755           1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE   80 (231)
T ss_pred             CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCcc
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFL  140 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~  140 (410)
                      ++|+.+...+++.+....+..++|+||+|.|+.+++..++++|+++++|+|.++..|..
T Consensus        81 ~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~~  139 (231)
T cd00755          81 CEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGGK  139 (231)
T ss_pred             cEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcCC
Confidence            99999998887554444444579999999999999999999999999999998766654

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=99.98  E-value=1.1e-31  Score=232.78  Aligned_cols=134  Identities=36%  Similarity=0.707  Sum_probs=123.0

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      +++||+|+|+||+||+++++|+++|+++|+|+|+|.|+++||+||++|+.+|+|++|+++++++++++||+++++++..+
T Consensus         1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~   80 (135)
T PF00899_consen    1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK   80 (135)
T ss_dssp             HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEE
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTV  145 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~  145 (410)
                      +++. ...++++++|+||+|+|+.+++.+++++|+++++|+|++++.|+.|+++.
T Consensus        81 ~~~~-~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~G~~~~  134 (135)
T PF00899_consen   81 IDEE-NIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGFYGQVVM  134 (135)
T ss_dssp             CSHH-HHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETTEEEEEE
T ss_pred             cccc-cccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEE
Confidence            8543 34577899999999999999999999999999999999999999999854

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK14851 hypothetical protein; Provisional

Probab=99.97  E-value=1.1e-31  Score=285.56  Aligned_cols=158  Identities=27%  Similarity=0.437  Sum_probs=148.1

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      +|++.|++|++++|+|||+||+||+++++|+++|||+|+|+|+|.|+.||||||++|+.+|||++|+++++++++++||+
T Consensus        33 ~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~  112 (679)
T PRK14851         33 FTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPF  112 (679)
T ss_pred             cCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccCC--hHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCC
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDN--LDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK  159 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn--~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~  159 (410)
                      ++|+++...+++.+ ..+|++++|+||+|+|+  .++|.++++.|+++++|+|.+++.|+.|++.++.|+ +.|+.|.++
T Consensus       113 ~~I~~~~~~i~~~n-~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~~~p~-~~~~~~~~~  190 (679)
T PRK14851        113 LEITPFPAGINADN-MDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVFTPQ-GMGFDDYFN  190 (679)
T ss_pred             CeEEEEecCCChHH-HHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccccceEEEEcCC-CCCHhHhcc
Confidence            99999999997543 35789999999999997  468999999999999999999999999999999887 788888765


Q ss_pred             CC
Q 015243          160 PA  161 (410)
Q Consensus       160 ~~  161 (410)
                      -.
T Consensus       191 ~~  192 (679)
T PRK14851        191 IG  192 (679)
T ss_pred             CC
Confidence            43

>PRK14852 hypothetical protein; Provisional

Probab=99.97  E-value=1.7e-31  Score=288.10  Aligned_cols=158  Identities=24%  Similarity=0.402  Sum_probs=147.7

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      +|.++|++|++++|+||||||+||+++++|+++|||+|+|+|+|.|+.||||||++|+.+|||++|+++++++++++||+
T Consensus       322 ig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~  401 (989)
T PRK14852        322 VDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPF  401 (989)
T ss_pred             cCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccCCh--HHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCC
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNL--DARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK  159 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~--~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~  159 (410)
                      ++|+.+...+++++ .++|++++|+||+|+|+.  +++.++++.|+++++|+|.+++.|+.|++.++.|+. .|+.|.++
T Consensus       402 v~I~~~~~~I~~en-~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~g~v~v~~p~~-~~~~~~f~  479 (989)
T PRK14852        402 LDIRSFPEGVAAET-IDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGYSCALLVFMPGG-MNFDSYFG  479 (989)
T ss_pred             CeEEEEecCCCHHH-HHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccccCeeEEEEcCCC-CCHHHhCC
Confidence            99999999986654 468999999999999984  578888999999999999999999999999998764 99999876


Q ss_pred             CC
Q 015243          160 PA  161 (410)
Q Consensus       160 ~~  161 (410)
                      -+
T Consensus       480 ~~  481 (989)
T PRK14852        480 ID  481 (989)
T ss_pred             CC
Confidence            43

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=99.97  E-value=8.2e-31  Score=243.85  Aligned_cols=153  Identities=29%  Similarity=0.481  Sum_probs=136.3

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      +|+++|++|++++|+|+|+||+||+++++|+++|+++|+|+|.|.|+.+||+||+++ .+|+|++|+++++++++++||+
T Consensus        18 ~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~Ka~~a~~~l~~lnp~   96 (212)
T PRK08644         18 HTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQIGMPKVEALKENLLEINPF   96 (212)
T ss_pred             cCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhCCChHHHHHHHHHHHHCCC
Confidence            699999999999999999999999999999999999999999999999999999976 7899999999999999999999


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHC-CCcEEEecccCccceEEEEeCCC--Cccccc
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA-DVPLVESGTTGFLGQVTVHVKGK--TECYEC  156 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~-~~p~i~~g~~G~~G~v~~~~~~~--t~c~~C  156 (410)
                      ++++.+...+++.. ..++++++|+||+|+||.++|..+++.|+++ ++|+|.++..|..|++..+.+..  ..||.|
T Consensus        97 v~v~~~~~~i~~~~-~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (212)
T PRK08644         97 VEIEAHNEKIDEDN-IEELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMAGYGDSNSIKTRRIGKNFYIV  173 (212)
T ss_pred             CEEEEEeeecCHHH-HHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhhccCCceEEEecCCCCCeeEC
Confidence            99999998886542 3478899999999999999999999999998 99999986666667766554433  445543

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=99.97  E-value=2.1e-30  Score=226.77  Aligned_cols=133  Identities=38%  Similarity=0.682  Sum_probs=126.4

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCCC
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD   93 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~   93 (410)
                      +|+|+|+||+||+++++|+++|+++|+|+|+|.|+++||+||++++.+|+|++|+++++++++++||+++++.+...+++
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~   80 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE   80 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999988865


Q ss_pred             CcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEe
Q 015243           94 PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHV  147 (410)
Q Consensus        94 ~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~  147 (410)
                      .. ..++++++|+||+|.|+.++|..++++|+++++|++++++.|+.|+++++.
T Consensus        81 ~~-~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g~~~~~~  133 (143)
T cd01483          81 DN-LDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGGDIQVID  133 (143)
T ss_pred             hh-HHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEEEEEEEE
Confidence            43 267889999999999999999999999999999999999999999999886

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=99.96  E-value=1.4e-29  Score=241.81  Aligned_cols=137  Identities=27%  Similarity=0.468  Sum_probs=125.7

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      +|+++|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|.|+.+|+|||+++..+|+|++|+++++++++++||+
T Consensus        20 ~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~   99 (268)
T PRK15116         20 YGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPE   99 (268)
T ss_pred             hCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccC
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTG  138 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G  138 (410)
                      ++|+.+...++.+.....+..++|+||+|.|+..++..++++|+++++|+|.+|..|
T Consensus       100 ~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag  156 (268)
T PRK15116        100 CRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAG  156 (268)
T ss_pred             cEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcc
Confidence            999999877764443333335799999999999999999999999999999886444

>PRK07877 hypothetical protein; Provisional

Probab=99.96  E-value=1.7e-29  Score=269.52  Aligned_cols=154  Identities=21%  Similarity=0.353  Sum_probs=140.3

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCC-CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP   80 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np   80 (410)
                      ||+++|++|++++|+|||+| +||.++.+|+++|| |+|+|+|+|.||.|||||| +|+.+|+|++|+++++++++++||
T Consensus        97 ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~~~~diG~~Kv~~a~~~l~~inp  174 (722)
T PRK07877         97 ITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PAGVFDLGVNKAVVAARRIAELDP  174 (722)
T ss_pred             CCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cCChhhcccHHHHHHHHHHHHHCC
Confidence            79999999999999999997 99999999999996 9999999999999999999 589999999999999999999999


Q ss_pred             CCeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEE---EEeCCCCcccccc
Q 015243           81 QMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVT---VHVKGKTECYECQ  157 (410)
Q Consensus        81 ~v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~---~~~~~~t~c~~C~  157 (410)
                      +++|+++...+++++ ..+|++++|+||+|+||+++|..+|+.|+++++|+|.++..+  |++.   +.+...++||.|.
T Consensus       175 ~i~v~~~~~~i~~~n-~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~~~--g~~~~e~~~~~p~~pc~~cl  251 (722)
T PRK07877        175 YLPVEVFTDGLTEDN-VDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMATSDR--GLLDVERFDLEPDRPILHGL  251 (722)
T ss_pred             CCEEEEEeccCCHHH-HHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCC--CCcCcceeeeCCCCceeecc
Confidence            999999999998654 457899999999999999999999999999999999988544  7763   2234479999999


Q ss_pred             CCC
Q 015243          158 PKP  160 (410)
Q Consensus       158 ~~~  160 (410)
                      .+.
T Consensus       252 ~~~  254 (722)
T PRK07877        252 LGD  254 (722)
T ss_pred             CCC
Confidence            764

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=99.96  E-value=3.9e-29  Score=225.80  Aligned_cols=142  Identities=26%  Similarity=0.437  Sum_probs=129.1

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCCC
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD   93 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~   93 (410)
                      ||+|+|+||+||+++++|+++|+++++|+|.|.|+.+||+||++ ..+|+|++|+++++++++++||+++++++..++++
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~-~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~   79 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQY-FLSQIGEPKVEALKENLREINPFVKIEAINIKIDE   79 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccc-cHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence            69999999999999999999999999999999999999999995 57899999999999999999999999999988865


Q ss_pred             CcchHhhhccCcEEEEccCChHHHHHHHHHHHHC-CCcEEEecccCccceEEEEeCCC--Ccccccc
Q 015243           94 PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA-DVPLVESGTTGFLGQVTVHVKGK--TECYECQ  157 (410)
Q Consensus        94 ~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~-~~p~i~~g~~G~~G~v~~~~~~~--t~c~~C~  157 (410)
                      . ...++++++|+||+|+||.++|..+++.|.++ ++|+|.++..|..|++..+.++.  .+||.|.
T Consensus        80 ~-~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (174)
T cd01487          80 N-NLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGMAGFGDSNNIKTKKISDNFYICG  145 (174)
T ss_pred             h-hHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehhhccCCeEEEEecCCCCCeEEee
Confidence            3 24578999999999999999999888877776 99999998889999998876654  5799998

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=99.96  E-value=2.8e-29  Score=276.61  Aligned_cols=150  Identities=19%  Similarity=0.467  Sum_probs=140.5

Q ss_pred             CCCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC
Q 015243            1 MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP   80 (410)
Q Consensus         1 ~~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np   80 (410)
                      .+|.++|++|++++|+|+|+||+|+|++|||+++|||+|+|+|+|.|+.+||+||||++++|||++|+++++++|+++||
T Consensus        13 l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLNp   92 (1008)
T TIGR01408        13 VLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELNP   92 (1008)
T ss_pred             hcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHCC
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCC--CcEEEecccCccceEEEEeCCCCcccc
Q 015243           81 QMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAAD--VPLVESGTTGFLGQVTVHVKGKTECYE  155 (410)
Q Consensus        81 ~v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~--~p~i~~g~~G~~G~v~~~~~~~t~c~~  155 (410)
                      .++|+.+...++     .+++++||+||+|.++.+.+..+|++|++++  +|+|.+++.|+.|++++..+....|.+
T Consensus        93 ~V~V~~~~~~l~-----~e~l~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~~~~~G~~G~vf~D~g~~f~~~d  164 (1008)
T TIGR01408        93 YVHVSSSSVPFN-----EEFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFISADVRGLFGSLFCDFGDEFEVLD  164 (1008)
T ss_pred             CceEEEecccCC-----HHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCCeEEEEEeecceEEEEEecCCCceEEEe
Confidence            999999987663     4789999999999999999999999999999  999999999999999987765444444

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=99.96  E-value=1e-28  Score=226.82  Aligned_cols=137  Identities=29%  Similarity=0.491  Sum_probs=129.7

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      +|+++.++|++++|+|+|+||+||.++..|+|+|+|+|+|||+|.|+.+|+|||.--...+||++|+++++++++.+||+
T Consensus        20 ~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~   99 (263)
T COG1179          20 YGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPE   99 (263)
T ss_pred             cChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCC
Confidence            79999999999999999999999999999999999999999999999999999987677899999999999999999999


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccC
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTG  138 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G  138 (410)
                      ++|.++...+++++..+-+..++|+||+|.|++.++..+-.+|+++++|+|.++..|
T Consensus       100 c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag  156 (263)
T COG1179         100 CEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAG  156 (263)
T ss_pred             ceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeecccc
Confidence            999999999998877766777899999999999999999999999999999987443

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=99.95  E-value=7.7e-28  Score=221.89  Aligned_cols=153  Identities=24%  Similarity=0.426  Sum_probs=127.5

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      +|++.|++|++++|+|+|+||+||+++++|+++|+++++|+|.|.|+.+||+||+ |..+|+|++|++++++.++++||.
T Consensus        11 ~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~-~~~~~iG~~Ka~~~~~~l~~inp~   89 (200)
T TIGR02354        11 HTPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQ-YKASQVGEPKTEALKENISEINPY   89 (200)
T ss_pred             cCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccccccc-CChhhCCCHHHHHHHHHHHHHCCC
Confidence            6899999999999999999999999999999999999999999999999999997 577899999999999999999999


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHH-HHCCC-cEEEecccCccceE--EEEeC--CCCcccc
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC-LAADV-PLVESGTTGFLGQV--TVHVK--GKTECYE  155 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c-~~~~~-p~i~~g~~G~~G~v--~~~~~--~~t~c~~  155 (410)
                      ++++++...+++.. ..++++++|+||+|+||.++|..+.+.| ..++. +++.+  .|..|+.  ..+.+  ....||.
T Consensus        90 ~~i~~~~~~i~~~~-~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~~--~g~~g~~~~~~~~~~~~~~~~~~  166 (200)
T TIGR02354        90 TEIEAYDEKITEEN-IDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIAA--SGLAGYDDANSIKTRKISKHFYL  166 (200)
T ss_pred             CEEEEeeeeCCHhH-HHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEEE--eccccCCCCceEEecccCCCEEE
Confidence            99999999887643 3567899999999999999998876555 44444 44553  3444443  33322  2356899


Q ss_pred             ccC
Q 015243          156 CQP  158 (410)
Q Consensus       156 C~~  158 (410)
                      |..
T Consensus       167 ~~~  169 (200)
T TIGR02354       167 CGD  169 (200)
T ss_pred             cCC
Confidence            843

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family

Probab=99.95  E-value=7.6e-28  Score=236.38  Aligned_cols=140  Identities=16%  Similarity=0.235  Sum_probs=132.5

Q ss_pred             HHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCe
Q 015243            4 ERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMS   83 (410)
Q Consensus         4 ~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~   83 (410)
                      +++|++|++++|+   |||+|+.++..|+. |||+|+|+|.|.|+.|||+  +||+++|||++|+++|++++.++||+++
T Consensus        68 ~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~~diG~~K~~~a~~~L~~lnp~v~  141 (318)
T TIGR03603        68 EDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSKEFILKKDIRDLTSNLDALELTKN  141 (318)
T ss_pred             HHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhChhhcCcHHHHHHHHHHHHhCCCCE
Confidence            5589999999999   99999999999999 9999999999999999999  8999999999999999999999999999


Q ss_pred             EEEEccCCCCCcchHhhhccCcEEEEccCChHHHHH--HHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCC
Q 015243           84 ITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRH--VNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK  159 (410)
Q Consensus        84 i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~--i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~  159 (410)
                      ++..          .++++++|+|++|+||+.+|..  +|+.|++.++|||.++..|+.|++.++.|+.++||+|..+
T Consensus       142 i~~~----------~~li~~~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV~gav~g~~Gqv~~~~P~~t~C~~Cl~~  209 (318)
T TIGR03603       142 VDEL----------KDLLKDYNYIIICTEHSNISLLRGLNKLSKETKKPNTIAFIDGPFVFITCTLPPETGCFECLER  209 (318)
T ss_pred             EeeH----------HHHhCCCCEEEECCCCccHhHHHHHHHHHHHHCCCEEEEEEccCEEEEEEEeCCCCCcHHHccc
Confidence            9763          3678999999999999999966  9999999999999999999999999988989999999955

Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.

>PRK06153 hypothetical protein; Provisional

Probab=99.94  E-value=1.3e-26  Score=228.92  Aligned_cols=149  Identities=17%  Similarity=0.279  Sum_probs=126.8

Q ss_pred             HHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCcccc-CCCCCCCCc--hHHHHHHHHHHhhCC
Q 015243            4 ERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQF-LFRQSHVGQ--SKAKVARDAVLKFRP   80 (410)
Q Consensus         4 ~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~-lf~~~diG~--~Ka~~a~~~l~~~np   80 (410)
                      .+.|++|++++|+||||||+||.++..|+++||++|+|+|+|.|+.+||+||. +|+.+|+|+  +|++++++++.++||
T Consensus       168 ~~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~  247 (393)
T PRK06153        168 GALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRR  247 (393)
T ss_pred             HHHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCC
Confidence            35799999999999999999999999999999999999999999999999998 678999999  999999999999998


Q ss_pred             CCeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCCC
Q 015243           81 QMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP  160 (410)
Q Consensus        81 ~v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~~  160 (410)
                        .|+++...+++.  +.+.+.++|+||+|+|+.++|..++++|.++++|+|++|..     +.+.-....+|.+|....
T Consensus       248 --~I~~~~~~I~~~--n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~-----l~~~~g~l~G~~Rvt~~~  318 (393)
T PRK06153        248 --GIVPHPEYIDED--NVDELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMG-----LELSNGSLGGILRVTLST  318 (393)
T ss_pred             --eEEEEeecCCHH--HHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeec-----ceecCCCcCcEEEEEEec
Confidence              567777777543  34568999999999999999999999999999999999853     111111124577776543


Q ss_pred             C
Q 015243          161 A  161 (410)
Q Consensus       161 ~  161 (410)
                      +
T Consensus       319 p  319 (393)
T PRK06153        319 P  319 (393)
T ss_pred             C
Confidence            3

>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=99.93  E-value=5.3e-26  Score=172.49  Aligned_cols=67  Identities=52%  Similarity=0.681  Sum_probs=56.4

Q ss_pred             cccCCcHHHHHHHHHHHHHHHHhcCCCCCChhHHHhhhccccchhhhHHHHHHHHHHHHHHHHHhcC
Q 015243          333 SFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKD  399 (410)
Q Consensus       333 ~FeKDDd~hidFI~AasNLRA~ny~I~~~~~~~~k~iag~IiPAiatT~aivagl~~~e~~k~~~~~  399 (410)
                      +|||||++|++||+|+|||||++||||+.|++++++++|+||||++||||||||++|+|++|+++++
T Consensus         1 ~Fd~dd~~h~~fI~a~anLrA~~f~I~~~~~~~~~~i~~~iIP~~~~t~~iva~~~~~e~~k~~~~~   67 (67)
T PF02134_consen    1 EFDKDDPLHLDFIYAAANLRAQNFGIPPLDREEIKKIAGNIIPAFAPTNAIVAGIAVNELYKLLQNC   67 (67)
T ss_dssp             ---TTSHHHHHHHHHHHHHHHHHTT---S-HHHHHHHHTTEE-B-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHhcCcCCCcCCchhHHHHHHHHHHHHHHhcC
Confidence            5999999999999999999999999999999999999999999999999999999999999999863

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....

>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]

Probab=99.92  E-value=3.4e-25  Score=205.94  Aligned_cols=154  Identities=31%  Similarity=0.566  Sum_probs=140.0

Q ss_pred             HHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeE
Q 015243            5 RQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSI   84 (410)
Q Consensus         5 e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i   84 (410)
                      ...+||+...|.|||.||+|+-.+..|.++|+|++.|.|.|.|+..|+||-| |+++..|.+|++++++.|..+||++.+
T Consensus        75 ~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRLF-f~P~QaGlsKv~AA~~TL~~iNPDV~i  153 (422)
T KOG2336|consen   75 DDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF-FQPDQAGLSKVDAAVQTLAEINPDVVI  153 (422)
T ss_pred             hhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhcccccc-cCcccccchHHHHHHHHHHhcCCCeEE
Confidence            3468999999999999999999999999999999999999999999999998 799999999999999999999999999


Q ss_pred             EEEccCCCCCcchHhhh-----------ccCcEEEEccCChHHHHHHHHHHHHCCCcEEEeccc--CccceEEEEeCCCC
Q 015243           85 TAHHANVKDPKFNVEFF-----------KQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT--GFLGQVTVHVKGKT  151 (410)
Q Consensus        85 ~~~~~~i~~~~~~~~~~-----------~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~--G~~G~v~~~~~~~t  151 (410)
                      +.|.-+++.-..-+.|.           +..|+|+.|+||+++|..+|..|...+.-|+++|..  ...||++.+.|+.|
T Consensus       154 E~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~q~WmESGVSEnAVSGHIQ~i~PGet  233 (422)
T KOG2336|consen  154 EVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELNQTWMESGVSENAVSGHIQLIVPGET  233 (422)
T ss_pred             EEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhhhHHHHccCccccccceeEEecCCcc
Confidence            99999985432222332           358999999999999999999999999999999987  57799999999999


Q ss_pred             ccccccCC
Q 015243          152 ECYECQPK  159 (410)
Q Consensus       152 ~c~~C~~~  159 (410)
                      .|+.|.++
T Consensus       234 ACFACaPP  241 (422)
T KOG2336|consen  234 ACFACAPP  241 (422)
T ss_pred             ceecccCc
Confidence            99999976

>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1e-23  Score=198.31  Aligned_cols=147  Identities=20%  Similarity=0.464  Sum_probs=139.3

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      -|-+.|++|+++||+|+|.+|+|.|++|||+++||++++++|.-.|...+++-|||++.+++|+.|+++..++++.+||.
T Consensus        21 WG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~~vg~~raeas~erl~~LNPm  100 (331)
T KOG2014|consen   21 WGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISASSVGQTRAEASLERLQDLNPM  100 (331)
T ss_pred             ccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchhhhchHHHHHHHHHHHhcCCc
Confidence            37789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCC
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGK  150 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~  150 (410)
                      ++|....+.+.+.  +++||.+||+||..--+.+.+..+|..|++++++|+.+++.|+.|+.+..+..+
T Consensus       101 V~v~~d~edl~ek--~eeff~qFdlVV~~~~s~e~~~kvn~icrk~~i~F~a~d~~g~~Gy~F~dL~~h  167 (331)
T KOG2014|consen  101 VDVSVDKEDLSEK--DEEFFTQFDLVVATDQSREEKCKVNEICRKLNIAFYAGDCFGLCGYAFADLQEH  167 (331)
T ss_pred             eEEEechhhhhhc--chhhhhceeEEEEeccchhhhhhHHHHHHhcCceEEeccccceeeeeeeehhhh
Confidence            9999999888654  579999999999988889999999999999999999999999999999987653

>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=7.2e-24  Score=220.27  Aligned_cols=182  Identities=20%  Similarity=0.439  Sum_probs=163.9

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      +|+|+++||+.++|||.|+||+|.|+||||+++||+++||.|...+..++|+.||+++++|||++++++..++|.++|+.
T Consensus        27 lG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~DigknRA~as~~~LaeLN~y  106 (1013)
T KOG2012|consen   27 LGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDIGKNRAEASVEKLAELNNY  106 (1013)
T ss_pred             ccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhcCCchHHHHHHHHHHhhcc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCCCC
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPA  161 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~~~  161 (410)
                      |.|..+.+..+     .+|+++|++||.+-.+.+....++++|+++++.+|.+.+.|..|++++..+....|++ ..+..
T Consensus       107 V~V~v~t~~~~-----~e~L~~FqvVVlt~~~le~q~~i~~fch~~~i~fi~ad~RGLfg~lFCDFG~eF~v~D-~tGee  180 (1013)
T KOG2012|consen  107 VPVVVLTGPLT-----EEFLSDFQVVVLTDASLEEQLKINDFCHSHGIAFIAADTRGLFGQLFCDFGEEFTVLD-PTGEE  180 (1013)
T ss_pred             eeeEEecCccc-----HHHHhCCcEEEEecCchHHHHHHHHHHHhcCeEEEEeccchhhhhhhccCCCceEEeC-CCCCc
Confidence            99999987764     5899999999998888999999999999999999999999999999999999888877 44556


Q ss_pred             CCCCCceeeccCCCcchHHHHHHHHHHHH
Q 015243          162 PKTYPVCTITSTPSKFVHCIVWAKDLLFA  190 (410)
Q Consensus       162 ~~~~p~cti~~~p~~~~h~i~~a~~~~f~  190 (410)
                      |.+..+-.|...-...+.|+.-+++ -|+
T Consensus       181 P~t~mI~~Is~d~pGvvT~ld~~rH-~lE  208 (1013)
T KOG2012|consen  181 PLTGMIASISQDNPGVVTCLDGARH-GFE  208 (1013)
T ss_pred             chhhHHhhccCCCCceEEEecCccc-cCc
Confidence            6676666666654467777776666 344

>PTZ00245 ubiquitin activating enzyme; Provisional

Probab=99.89  E-value=2.8e-23  Score=192.81  Aligned_cols=105  Identities=15%  Similarity=0.288  Sum_probs=97.2

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      +|.++|+||++++|+|+|+||+|+|++|||+++|||+|+|+|+|.|+.+||+|||+++. ++|++|+++++++++++||+
T Consensus        16 wG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dvGk~KAeaAa~~L~eLNP~   94 (287)
T PTZ00245         16 WGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EAGGTRGARALGALQRLNPH   94 (287)
T ss_pred             hCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-ccCCcHHHHHHHHHHHHCCC
Confidence            69999999999999999999999999999999999999999999999999999999987 68999999999999999999


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccCCh
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNL  114 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~  114 (410)
                      ++|+++..++++.       .+|++||.+.-+.
T Consensus        95 V~V~~i~~rld~~-------n~fqvvV~~~~~l  120 (287)
T PTZ00245         95 VSVYDAVTKLDGS-------SGTRVTMAAVITE  120 (287)
T ss_pred             cEEEEcccccCCc-------CCceEEEEEcccH
Confidence            9999998888543       4788888886543

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=4.5e-22  Score=187.79  Aligned_cols=137  Identities=25%  Similarity=0.378  Sum_probs=127.8

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      ||+++|+||.++-|+||||||+||.++..|+++|+++|.|+|.|.|+.|.||||......|||.||+.++++.++++.|.
T Consensus        64 fGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw  143 (430)
T KOG2018|consen   64 FGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPW  143 (430)
T ss_pred             hhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCcc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccC
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTG  138 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G  138 (410)
                      ++|++...-++.....+-.+.+.|+|++|.||.+++.-+-++|..+++++|.+...+
T Consensus       144 ~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~Gaa  200 (430)
T KOG2018|consen  144 CEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGAA  200 (430)
T ss_pred             ceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCcc
Confidence            999999888876655555677899999999999999999999999999999875333

>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]

Probab=99.85  E-value=1.1e-20  Score=188.20  Aligned_cols=234  Identities=21%  Similarity=0.298  Sum_probs=174.3

Q ss_pred             CHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCC---CchHHHHHHHHHHhhC
Q 015243            3 SERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV---GQSKAKVARDAVLKFR   79 (410)
Q Consensus         3 g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~di---G~~Ka~~a~~~l~~~n   79 (410)
                      +.-..+++.+.++++.|+|.+||.++++|...||+|||++|+.+|..||-.||.||..+|.   |++||++|+++|++++
T Consensus       331 PdLnLd~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~If  410 (669)
T KOG2337|consen  331 PDLNLDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEIF  410 (669)
T ss_pred             CccchhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHhC
Confidence            4445689999999999999999999999999999999999999999999999999999997   5999999999999999


Q ss_pred             CCCeEEEEccCCC-------CC---------cchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceE
Q 015243           80 PQMSITAHHANVK-------DP---------KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQV  143 (410)
Q Consensus        80 p~v~i~~~~~~i~-------~~---------~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v  143 (410)
                      |.++-+++...+.       +.         .-.+.+++..|+|+..+|+.++|+.-.-+|...++-+|++. .|+..++
T Consensus       411 P~m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~~~KivINaA-LGFDsyl  489 (669)
T KOG2337|consen  411 PSMEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAAKNKIVINAA-LGFDSYL  489 (669)
T ss_pred             ccccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhhhcceEeeee-cccceeE
Confidence            9999888776651       11         01134688999999999999999999999999999888875 4665544


Q ss_pred             EEE--------------------eCCCCccccccCCCCCCC-------CCceeeccCCCcchHHHHHHHHHHHHHHhCCC
Q 015243          144 TVH--------------------VKGKTECYECQPKPAPKT-------YPVCTITSTPSKFVHCIVWAKDLLFAKLFGDK  196 (410)
Q Consensus       144 ~~~--------------------~~~~t~c~~C~~~~~~~~-------~p~cti~~~p~~~~h~i~~a~~~~f~~~f~~~  196 (410)
                      ..-                    .+.+-+||.|..--.|..       -..||++. |....-+-..|.|++-..+.+.-
T Consensus       490 VMRHG~~~~~~~~d~q~s~~~~i~~~qLGCYFCnDV~AP~nSl~DRTLDQqCTVtR-PG~a~IA~alAVELlvslLQhP~  568 (669)
T KOG2337|consen  490 VMRHGTGRKEASDDGQSSDLKCINGDQLGCYFCNDVVAPGNSLTDRTLDQQCTVTR-PGVANIASALAVELLVSLLQHPL  568 (669)
T ss_pred             EEecCCCCcccccccccccccccCcccceeEeEcceecCCCcccccchhheeeccC-CchhHHHHHHHHHHHHHHHhCcc
Confidence            322                    223568999986544432       25799875 55554456789996656665531


Q ss_pred             ----Cccc--ccccc-CccccchhhHHhhhh--------cCCcccHHHHHHHHHHhh
Q 015243          197 ----NQEN--DLNVR-SSDASSSAHAEDVFV--------RRKDEDIDQYGRRIYDHV  238 (410)
Q Consensus       197 ----~~~~--~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~a~~~f~~~  238 (410)
                          +...  ..+++ ......+++++.++.        ...++.|..+...+.+.|
T Consensus       569 ~~a~~~s~~~~~n~~~tvLG~lPHQIRGfL~nFs~i~~~~~af~qC~ACS~~Vi~ey  625 (669)
T KOG2337|consen  569 GYAQNSSEETEENEPTTVLGILPHQIRGFLHNFSNILPSTQAFDQCTACSEAVINEY  625 (669)
T ss_pred             ccccCCCcccccCCCCcccccccHHHHHhhhhhhhhccccccccccchhhHHHHHHH
Confidence                1100  11111 112226788887763        235788988887766554

>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=1.3e-20  Score=185.03  Aligned_cols=149  Identities=23%  Similarity=0.381  Sum_probs=135.5

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      -|+++|..|..++|+++|||++|||++|||++.|+|.|+++|...|+.++++.+|+...+++|++||++..+.++++||+
T Consensus        17 wge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~GksrA~a~~e~LqeLN~~   96 (523)
T KOG2016|consen   17 WGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSIGKSRAEATLEFLQELNPS   96 (523)
T ss_pred             HHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhhchhHHHHHHHHHHHhChh
Confidence            48899999999999999999999999999999999999999999999999999999889999999999999999999999


Q ss_pred             CeEEEEccCCCC-CcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCC
Q 015243           82 MSITAHHANVKD-PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGK  150 (410)
Q Consensus        82 v~i~~~~~~i~~-~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~  150 (410)
                      ++-....+..+. ...+..||.+|++|+.+--+.+....+.+.|+.+++|++.+.+.|+.|.+...+..+
T Consensus        97 V~~~~vee~p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll~~rs~Gl~G~iRI~ikEH  166 (523)
T KOG2016|consen   97 VSGSFVEESPDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREANVPLLLTRSYGLAGTIRISIKEH  166 (523)
T ss_pred             hhcCccccChhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcCCceEEEeeecceEEEEEEeeec
Confidence            987766655421 123568999999999987777888899999999999999999999999999987764

>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein

Probab=99.58  E-value=7.5e-15  Score=151.97  Aligned_cols=137  Identities=24%  Similarity=0.365  Sum_probs=113.5

Q ss_pred             CHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCC
Q 015243            3 SERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM   82 (410)
Q Consensus         3 g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v   82 (410)
                      |.+..++-++++|+|+|.||+|+.++.+|+.+|+++|+.+|.|.+ .+|++|        ||+. ++.+++    +||++
T Consensus       120 ~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR--------IgEl-~e~A~~----~n~~v  185 (637)
T TIGR03693       120 GALKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR--------IHEL-AEIAEE----TDDAL  185 (637)
T ss_pred             chhhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH--------HHHH-HHHHHH----hCCCC
Confidence            445566679999999999999999999999999999999999999 999999        7776 555554    99999


Q ss_pred             eEEEEccCCCCCcchHhhhccCcEEEEccCCh--HHHHHHHHHHHHCC---CcEEEecccCccceEEEEeCCCCcccccc
Q 015243           83 SITAHHANVKDPKFNVEFFKQFNVVLNGLDNL--DARRHVNRLCLAAD---VPLVESGTTGFLGQVTVHVKGKTECYECQ  157 (410)
Q Consensus        83 ~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~--~~r~~i~~~c~~~~---~p~i~~g~~G~~G~v~~~~~~~t~c~~C~  157 (410)
                      +++.+..  +....-.+.++++|+|++..|++  +...++|+.|++.+   +|++.+|..++.|-++.  |+.++|+.|.
T Consensus       186 ~v~~i~~--~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~G~~~liGPlft--PgkTGCWeCa  261 (637)
T TIGR03693       186 LVQEIDF--AEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICLKQVGLAGPVFQ--QHGDECFEAA  261 (637)
T ss_pred             ceEeccC--CcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEcccceeecceEC--CCCCcHHHHH
Confidence            9998876  33333457789999999999954  45688999999999   55566677777776655  9999999994

Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.

>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=99.50  E-value=7.8e-15  Score=101.85  Aligned_cols=45  Identities=62%  Similarity=1.249  Sum_probs=39.4

Q ss_pred             CCCccccccCCCCCCCCCceeeccCCCcchHHHHHHHHHHHHHHhC
Q 015243          149 GKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFG  194 (410)
Q Consensus       149 ~~t~c~~C~~~~~~~~~p~cti~~~p~~~~h~i~~a~~~~f~~~f~  194 (410)
                      +.|+||+|..++.+.++|+|||+++|+.++|||+||++ +|+.+|+
T Consensus         1 ~~Tecy~c~~~~~~~~~P~CTir~~P~~~~HcI~wAk~-~f~~~F~   45 (45)
T PF10585_consen    1 HVTECYECSPDPPEKSYPVCTIRNFPRTPEHCIEWAKD-LFEELFG   45 (45)
T ss_dssp             TTS--TTCSGGGSSSSEEHHHHHTS-SSHHHHHHHHHH-HHHHHHT
T ss_pred             CccccccCCCCCCCCCCCcchhhcCCCCchHHHHHHHH-HHHHHhC
Confidence            46899999999999999999999999999999999997 8999996

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....

>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]

Probab=98.28  E-value=5.4e-06  Score=72.47  Aligned_cols=117  Identities=15%  Similarity=0.253  Sum_probs=93.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHH---HhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           12 GAKVLMVGAGGIGCELLKTLA---LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa---~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      +..|.++|||.+|--++-+|.   +.|..+|.++|...|++.++---.  --..+|.+|++.++ ++.+..+.-+|++..
T Consensus        18 rGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihrr--~Ga~~GEyKv~Fi~-rl~~~~f~r~V~a~p   94 (217)
T COG4015          18 RGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHRR--LGAKVGEYKVDFIK-RLGRVHFGRRVEAFP   94 (217)
T ss_pred             CceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHHH--hCCCcchhHHHHHH-HhCcCCCCceeeccc
Confidence            456999999999999999998   578899999999999999984222  24579999999765 455667777999999


Q ss_pred             cCCCCCcchHhhhccCcEEEEc---cCChHHHHHHHHHHHHCCCcEEEe
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNG---LDNLDARRHVNRLCLAADVPLVES  134 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a---~Dn~~~r~~i~~~c~~~~~p~i~~  134 (410)
                      ..+++++.  ..+++ |+|+.|   .|..+.-..+-++|++.++.-|..
T Consensus        95 E~it~dNl--hll~g-DVvvi~IAGGdT~PvTaaii~ya~~rG~~TisT  140 (217)
T COG4015          95 ENITKDNL--HLLKG-DVVVICIAGGDTIPVTAAIINYAKERGIKTIST  140 (217)
T ss_pred             ccccccch--hhhcC-CEEEEEecCCCcchhHHHHHHHHHHcCceEeec
Confidence            99987643  45555 777664   477888889999999999977754

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=98.09  E-value=5.1e-06  Score=84.95  Aligned_cols=36  Identities=36%  Similarity=0.470  Sum_probs=32.2

Q ss_pred             ccCCccccCCcHHHHHHHHHHHHHHHHhcCCCCCCh
Q 015243          328 EIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSL  363 (410)
Q Consensus       328 ~~~p~~FeKDDd~hidFI~AasNLRA~ny~I~~~~~  363 (410)
                      .+.|++||.+|+.|++||.++|||||..|+|+.-++
T Consensus       244 ~P~p~~fd~~~~~h~~fv~~~a~l~a~~~~~~~FeK  279 (435)
T cd01490         244 CPTPLEFDVNNPLHLDFVLAAANLYAEVYGIPGFEK  279 (435)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcccc
Confidence            367999999999999999999999999999986333

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain

Probab=98.04  E-value=2e-05  Score=72.48  Aligned_cols=96  Identities=24%  Similarity=0.295  Sum_probs=74.7

Q ss_pred             CHHHHHHHhCCcEEEECCcHHHHH-HHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            3 SERQLEAIKGAKVLMVGAGGIGCE-LLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         3 g~e~q~~L~~~~VlvvG~GgiG~e-v~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      +.+.+++|++.+|.|+|.|+.|++ ++..|+.+|++.+.                                         
T Consensus        96 ~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~-----------------------------------------  134 (193)
T TIGR03882        96 PAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAP-----------------------------------------  134 (193)
T ss_pred             HHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccC-----------------------------------------
Confidence            356789999999999999999999 99999999998654                                         


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEE-eCCCCcccccc
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVH-VKGKTECYECQ  157 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~-~~~~t~c~~C~  157 (410)
                                .+        ...++|++.....+-...+|+...+.++||+-....|..+.+.++ .|+.|+|+.|.
T Consensus       135 ----------~~--------a~l~vVl~~Dyl~p~L~~~n~~~l~~~~~~l~v~~~~~~~~~gp~~~p~~~~c~~c~  193 (193)
T TIGR03882       135 ----------SE--------ADLTVVLTDDYLDPELAAINQRALAAGRPWLLVKPGGVQPWIGPLFKPGKTGCWHCL  193 (193)
T ss_pred             ----------CC--------CCEEEEEeCCCCChHHHHHHHHHHHcCCceEEEEeCCceEEECCeecCCCCcccccC
Confidence                      00        112333333222234456899999999999999999998988875 69999999995

This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.99  E-value=3.6e-05  Score=77.60  Aligned_cols=101  Identities=23%  Similarity=0.399  Sum_probs=73.7

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~   92 (410)
                      ++|+|+|||++|+.++.+|++.|.++|++.|...                   .|+    +++...... ++++..-++.
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~-------------------~~~----~~i~~~~~~-~v~~~~vD~~   57 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK-------------------EKC----ARIAELIGG-KVEALQVDAA   57 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH-------------------HHH----HHHHhhccc-cceeEEeccc
Confidence            6899999999999999999999999999988211                   121    222222111 6666666665


Q ss_pred             CCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccC
Q 015243           93 DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTG  138 (410)
Q Consensus        93 ~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G  138 (410)
                      +..-..+.++++|+||+|..-.-.+ .+-+.|.+.++++++.....
T Consensus        58 d~~al~~li~~~d~VIn~~p~~~~~-~i~ka~i~~gv~yvDts~~~  102 (389)
T COG1748          58 DVDALVALIKDFDLVINAAPPFVDL-TILKACIKTGVDYVDTSYYE  102 (389)
T ss_pred             ChHHHHHHHhcCCEEEEeCCchhhH-HHHHHHHHhCCCEEEcccCC
Confidence            4444557889999999998755444 67789999999999987543

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.85  E-value=0.00016  Score=66.98  Aligned_cols=94  Identities=14%  Similarity=0.135  Sum_probs=65.5

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      .|.+++|+|||.|.+|...++.|...| .++++++.+.      .               ..+.+..    +.-.+....
T Consensus         7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~------~---------------~~l~~l~----~~~~i~~~~   60 (202)
T PRK06718          7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPEL------T---------------ENLVKLV----EEGKIRWKQ   60 (202)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCC------C---------------HHHHHHH----hCCCEEEEe
Confidence            378999999999999999999999999 6799986431      0               0111111    111233333


Q ss_pred             cCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEe
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVES  134 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~  134 (410)
                      ..+     ....+.++|+||.|+++.+.-..+.+.| ..++++-.+
T Consensus        61 ~~~-----~~~~l~~adlViaaT~d~elN~~i~~~a-~~~~lvn~~  100 (202)
T PRK06718         61 KEF-----EPSDIVDAFLVIAATNDPRVNEQVKEDL-PENALFNVI  100 (202)
T ss_pred             cCC-----ChhhcCCceEEEEcCCCHHHHHHHHHHH-HhCCcEEEC
Confidence            222     3345788999999999999999999999 456654443

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.85  E-value=6e-05  Score=73.46  Aligned_cols=77  Identities=21%  Similarity=0.316  Sum_probs=60.0

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      +..++|+|+|+||.|..++..|+..|+++|+|+|.+                   ..|++.+++.+.+..+.+.+.... 
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~-------------------~~ka~~la~~l~~~~~~~~~~~~~-  184 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD-------------------PARAAALADELNARFPAARATAGS-  184 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHHHhhCCCeEEEecc-
Confidence            566799999999999999999999999999999854                   268888888887777765543321 


Q ss_pred             CCCCCcchHhhhccCcEEEEccC
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                      .+      .+.+.++|+||+|+.
T Consensus       185 ~~------~~~~~~aDiVInaTp  201 (284)
T PRK12549        185 DL------AAALAAADGLVHATP  201 (284)
T ss_pred             ch------HhhhCCCCEEEECCc
Confidence            11      234578999999963

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.81  E-value=9e-05  Score=64.05  Aligned_cols=79  Identities=27%  Similarity=0.423  Sum_probs=57.2

Q ss_pred             HHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         8 ~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      ..+.+++|+|+|+||.|..+++.|...|+++|+|++          |.         ..|++.+++.+    +...+...
T Consensus         8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~n----------Rt---------~~ra~~l~~~~----~~~~~~~~   64 (135)
T PF01488_consen    8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVN----------RT---------PERAEALAEEF----GGVNIEAI   64 (135)
T ss_dssp             STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEE----------SS---------HHHHHHHHHHH----TGCSEEEE
T ss_pred             CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEE----------CC---------HHHHHHHHHHc----Ccccccee
Confidence            368999999999999999999999999999999976          32         24677666666    33333333


Q ss_pred             ccCCCCCcchHhhhccCcEEEEccCCh
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGLDNL  114 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn~  114 (410)
                      .-.  +   ..+.+.++|+||+|+...
T Consensus        65 ~~~--~---~~~~~~~~DivI~aT~~~   86 (135)
T PF01488_consen   65 PLE--D---LEEALQEADIVINATPSG   86 (135)
T ss_dssp             EGG--G---HCHHHHTESEEEE-SSTT
T ss_pred             eHH--H---HHHHHhhCCeEEEecCCC
Confidence            211  1   125678999999998654

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.62  E-value=0.00085  Score=62.25  Aligned_cols=97  Identities=19%  Similarity=0.232  Sum_probs=72.1

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      |++++|+|||.|.+|..-++.|...|. ++++++++.-                     ..+.+ +.+.   -+++.+..
T Consensus         7 l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~---------------------~~l~~-l~~~---~~i~~~~~   60 (205)
T TIGR01470         7 LEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE---------------------SELTL-LAEQ---GGITWLAR   60 (205)
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC---------------------HHHHH-HHHc---CCEEEEeC
Confidence            678999999999999999999999995 6999986421                     00111 1111   14555554


Q ss_pred             CCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEeccc
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT  137 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~  137 (410)
                      ...     ...+.++++||.|+|+.+....+...|+..++|+-.++--
T Consensus        61 ~~~-----~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~  103 (205)
T TIGR01470        61 CFD-----ADILEGAFLVIAATDDEELNRRVAHAARARGVPVNVVDDP  103 (205)
T ss_pred             CCC-----HHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECCCc
Confidence            442     3557899999999999888899999999999988655533

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.59  E-value=0.00027  Score=58.16  Aligned_cols=89  Identities=17%  Similarity=0.266  Sum_probs=64.5

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      .|++.+|+|||.|.+|..-++.|..+| .+++++.++. +.                     +.       ..++  ...
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~-~~---------------------~~-------~~i~--~~~   51 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI-EF---------------------SE-------GLIQ--LIR   51 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE-HH---------------------HH-------TSCE--EEE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch-hh---------------------hh-------hHHH--HHh
Confidence            478999999999999999999999999 6799998765 10                     00       1122  222


Q ss_pred             cCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEec
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g  135 (410)
                      ..+     . +.+.++++|+.|+++.+....+.+.|++.++|+-.+.
T Consensus        52 ~~~-----~-~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~D   92 (103)
T PF13241_consen   52 REF-----E-EDLDGADLVFAATDDPELNEAIYADARARGILVNVVD   92 (103)
T ss_dssp             SS------G-GGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEETT
T ss_pred             hhH-----H-HHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEECC
Confidence            222     2 4478899999999999999999999999999876654

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.42  E-value=0.0016  Score=57.82  Aligned_cols=85  Identities=13%  Similarity=0.205  Sum_probs=61.5

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      .|++++|+|||.|.+|...++.|...|. ++++++++..+                         .+.++ +  .++...
T Consensus        10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~~-------------------------~l~~l-~--~i~~~~   60 (157)
T PRK06719         10 NLHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEICK-------------------------EMKEL-P--YITWKQ   60 (157)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccCH-------------------------HHHhc-c--CcEEEe
Confidence            4789999999999999999999999996 58898755321                         01111 1  122222


Q ss_pred             cCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHC
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA  127 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~  127 (410)
                      ..+     ....+.++|+||.|+|+.+....+...|+..
T Consensus        61 ~~~-----~~~dl~~a~lViaaT~d~e~N~~i~~~a~~~   94 (157)
T PRK06719         61 KTF-----SNDDIKDAHLIYAATNQHAVNMMVKQAAHDF   94 (157)
T ss_pred             ccc-----ChhcCCCceEEEECCCCHHHHHHHHHHHHHC
Confidence            222     3345688999999999999988888888774

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=97.38  E-value=0.00063  Score=69.00  Aligned_cols=96  Identities=26%  Similarity=0.440  Sum_probs=66.6

Q ss_pred             EEEECCcHHHHHHHHHHHHhCCC-cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCCC
Q 015243           15 VLMVGAGGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD   93 (410)
Q Consensus        15 VlvvG~GgiG~ev~knLa~~Gv~-~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~   93 (410)
                      |+|+|+|.+|..+++.|++.+-- ++++.|.+.                   .|++.+++.+    ...++....-++.+
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~-------------------~~~~~~~~~~----~~~~~~~~~~d~~~   57 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNP-------------------EKAERLAEKL----LGDRVEAVQVDVND   57 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSH-------------------HHHHHHHT------TTTTEEEEE--TTT
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCH-------------------HHHHHHHhhc----cccceeEEEEecCC
Confidence            78999999999999999998854 899988332                   2333333322    33467777667765


Q ss_pred             CcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEe
Q 015243           94 PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVES  134 (410)
Q Consensus        94 ~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~  134 (410)
                      ......+++++|+||+|+... ....+-+.|.+.++++++.
T Consensus        58 ~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD~   97 (386)
T PF03435_consen   58 PESLAELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVDT   97 (386)
T ss_dssp             HHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEES
T ss_pred             HHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeecc
Confidence            444567899999999998765 6667899999999999994

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=97.34  E-value=0.0026  Score=59.66  Aligned_cols=96  Identities=18%  Similarity=0.218  Sum_probs=70.3

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      +++.+|+|||.|.+|..=++.|...| .+|+++-++.-+                  .   +.+ +.+ ++  +++....
T Consensus        23 ~~~~~VLVVGGG~VA~RK~~~Ll~~g-A~VtVVap~i~~------------------e---l~~-l~~-~~--~i~~~~r   76 (223)
T PRK05562         23 SNKIKVLIIGGGKAAFIKGKTFLKKG-CYVYILSKKFSK------------------E---FLD-LKK-YG--NLKLIKG   76 (223)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCCCH------------------H---HHH-HHh-CC--CEEEEeC
Confidence            56889999999999999999999999 459998655210                  0   011 111 22  3544444


Q ss_pred             CCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecc
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT  136 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~  136 (410)
                      .+     ....+.++++||.|+|+.+.-..+.+.|...++++..+.-
T Consensus        77 ~~-----~~~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~  118 (223)
T PRK05562         77 NY-----DKEFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSD  118 (223)
T ss_pred             CC-----ChHHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCC
Confidence            44     3455789999999999999999999999999998776643

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=96.98  E-value=0.0034  Score=61.32  Aligned_cols=84  Identities=19%  Similarity=0.318  Sum_probs=55.2

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      +.+++++|+|+||+|..++..|+..|+.+|+|++.+.-                ...|++.+++.+.+..+.+.+...  
T Consensus       124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~----------------~~~~a~~l~~~l~~~~~~~~~~~~--  185 (289)
T PRK12548        124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD----------------FYERAEQTAEKIKQEVPECIVNVY--  185 (289)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch----------------HHHHHHHHHHHHhhcCCCceeEEe--
Confidence            45778999999999999999999999999999873210                113566666666555454443322  


Q ss_pred             CCCCCcchHhhhccCcEEEEcc
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGL  111 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~  111 (410)
                      .+.+.......+..+|+||+|+
T Consensus       186 d~~~~~~~~~~~~~~DilINaT  207 (289)
T PRK12548        186 DLNDTEKLKAEIASSDILVNAT  207 (289)
T ss_pred             chhhhhHHHhhhccCCEEEEeC
Confidence            2221111123456778988886

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=96.92  E-value=0.0035  Score=61.12  Aligned_cols=79  Identities=23%  Similarity=0.344  Sum_probs=54.6

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      +.+++|+|+|+||.|..++..|+..|+.+|+|+|.+                   ..|++.+++.+....+...+...  
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~-------------------~~ka~~La~~~~~~~~~~~~~~~--  183 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD-------------------TSRAQALADVINNAVGREAVVGV--  183 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC-------------------HHHHHHHHHHHhhccCcceEEec--
Confidence            456789999999999999999999999999998633                   23778787776544333222221  


Q ss_pred             CCCCCcchHhhhccCcEEEEccC
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                      ...  . .......+|+||+|+.
T Consensus       184 ~~~--~-~~~~~~~~divINaTp  203 (283)
T PRK14027        184 DAR--G-IEDVIAAADGVVNATP  203 (283)
T ss_pred             CHh--H-HHHHHhhcCEEEEcCC
Confidence            110  0 0123467899999874

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=96.88  E-value=0.0017  Score=66.01  Aligned_cols=76  Identities=28%  Similarity=0.355  Sum_probs=58.4

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      .|.+++|+|||+|-+|.-+++.|...|+.+|+++          ||++         .|++-+++.+.     .++..+.
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~Ia----------NRT~---------erA~~La~~~~-----~~~~~l~  230 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIA----------NRTL---------ERAEELAKKLG-----AEAVALE  230 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEE----------cCCH---------HHHHHHHHHhC-----CeeecHH
Confidence            4778899999999999999999999999999994          6764         37777777664     2222221


Q ss_pred             cCCCCCcchHhhhccCcEEEEccCChH
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLDNLD  115 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~  115 (410)
                             ...+++.++|+||.|+..+.
T Consensus       231 -------el~~~l~~~DvVissTsa~~  250 (414)
T COG0373         231 -------ELLEALAEADVVISSTSAPH  250 (414)
T ss_pred             -------HHHHhhhhCCEEEEecCCCc
Confidence                   12477899999999987644

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.80  E-value=0.0034  Score=61.10  Aligned_cols=77  Identities=23%  Similarity=0.302  Sum_probs=52.5

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      +++++|+|+|+||.|..++..|+..|+++|+|++.+                   ..|++.+++.+....   .+.... 
T Consensus       123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt-------------------~~ka~~La~~~~~~~---~~~~~~-  179 (282)
T TIGR01809       123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN-------------------PDKLSRLVDLGVQVG---VITRLE-  179 (282)
T ss_pred             cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC-------------------HHHHHHHHHHhhhcC---cceecc-
Confidence            467899999999999999999999999999998632                   246777766654321   111111 


Q ss_pred             CCCCCcchHhhhccCcEEEEccC
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                      ...  . ......++|+||+|+-
T Consensus       180 ~~~--~-~~~~~~~~DiVInaTp  199 (282)
T TIGR01809       180 GDS--G-GLAIEKAAEVLVSTVP  199 (282)
T ss_pred             chh--h-hhhcccCCCEEEECCC
Confidence            000  0 1133467999999974

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.77  E-value=0.012  Score=55.34  Aligned_cols=99  Identities=18%  Similarity=0.278  Sum_probs=67.1

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~   92 (410)
                      ++++|+|+|.+|..+++.|+..|-. ++++|.|.-                      .+.+.+..   .....++..+.+
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~-Vv~Id~d~~----------------------~~~~~~~~---~~~~~~v~gd~t   54 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHN-VVLIDRDEE----------------------RVEEFLAD---ELDTHVVIGDAT   54 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCc-eEEEEcCHH----------------------HHHHHhhh---hcceEEEEecCC
Confidence            4799999999999999999999966 777774431                      11222221   123444444444


Q ss_pred             CCcchH-hhhccCcEEEEccCChHHHHHHHHHHHH-CCCcEEEeccc
Q 015243           93 DPKFNV-EFFKQFNVVLNGLDNLDARRHVNRLCLA-ADVPLVESGTT  137 (410)
Q Consensus        93 ~~~~~~-~~~~~~DvVi~a~Dn~~~r~~i~~~c~~-~~~p~i~~g~~  137 (410)
                      +..... .-+.++|+++.++++......+-.++.+ +++|-+.+...
T Consensus        55 ~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~  101 (225)
T COG0569          55 DEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARAR  101 (225)
T ss_pred             CHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEec
Confidence            332222 2367899999999987877777777766 89998887653

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.71  E-value=0.015  Score=57.70  Aligned_cols=165  Identities=13%  Similarity=0.130  Sum_probs=92.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~   92 (410)
                      ++|.|||+|.+|+.++..++..|.. ++++|.+.-....+            +.+.....+.+.+..+.  ......++.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~-V~l~D~~~~~~~~~------------~~~i~~~~~~~~~~~~~--~~~~~~~i~   72 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLD-VVAWDPAPGAEAAL------------RANVANAWPALERQGLA--PGASPARLR   72 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCCHHHHHHH------------HHHHHHHHHHHHHcCCC--hhhHHhhce
Confidence            5799999999999999999999976 88888554211110            11111111222111110  001111221


Q ss_pred             CCcchHhhhccCcEEEEcc-CChHHHHHHHHHHHHCCC--cEEEecccCccce-EEEEeCCCCccccccCCCCCCCCCce
Q 015243           93 DPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGFLGQ-VTVHVKGKTECYECQPKPAPKTYPVC  168 (410)
Q Consensus        93 ~~~~~~~~~~~~DvVi~a~-Dn~~~r~~i~~~c~~~~~--p~i~~g~~G~~G~-v~~~~~~~t~c~~C~~~~~~~~~p~c  168 (410)
                      -.....+-++++|+|+.|+ ++.+.+..+-+.....-.  .+|.+.|.+.... +.-......-|...++-.++...|..
T Consensus        73 ~~~~l~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLV  152 (321)
T PRK07066         73 FVATIEACVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLV  152 (321)
T ss_pred             ecCCHHHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceE
Confidence            1111235678999999986 456666555443333222  3777777665321 11111222334444454556667888


Q ss_pred             eeccCCCcchHHHHHHHHHHHHHHhC
Q 015243          169 TITSTPSKFVHCIVWAKDLLFAKLFG  194 (410)
Q Consensus       169 ti~~~p~~~~h~i~~a~~~~f~~~f~  194 (410)
                      .+...+.+....+.++.+ ++.. .+
T Consensus       153 EVv~g~~T~~e~~~~~~~-f~~~-lG  176 (321)
T PRK07066        153 EVLGGERTAPEAVDAAMG-IYRA-LG  176 (321)
T ss_pred             EEeCCCCCCHHHHHHHHH-HHHH-cC
Confidence            888888888888999988 4554 44

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=96.68  E-value=0.0066  Score=59.30  Aligned_cols=83  Identities=22%  Similarity=0.300  Sum_probs=53.9

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      +++++++|+|+||.+..++-.|+..|+++|+|++.+.                -...|++.+++.+....+ ..+.... 
T Consensus       122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~----------------~~~~ka~~la~~~~~~~~-~~~~~~~-  183 (288)
T PRK12749        122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD----------------EFFDKALAFAQRVNENTD-CVVTVTD-  183 (288)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc----------------cHHHHHHHHHHHhhhccC-ceEEEec-
Confidence            4677999999999999999999999999999987210                124577777777654322 1222211 


Q ss_pred             CCCCCcchHhhhccCcEEEEcc
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGL  111 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~  111 (410)
                       +.+.....+-..++|+||+|+
T Consensus       184 -~~~~~~l~~~~~~aDivINaT  204 (288)
T PRK12749        184 -LADQQAFAEALASADILTNGT  204 (288)
T ss_pred             -hhhhhhhhhhcccCCEEEECC
Confidence             110000012346789999986

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=96.65  E-value=0.0036  Score=64.22  Aligned_cols=77  Identities=21%  Similarity=0.301  Sum_probs=54.2

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      .+.+++|+|+|+|+.|..++++|+..|+.+|+++.          |.         ..|++.+++.+.    ...+..+.
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~n----------Rt---------~~ra~~La~~~~----~~~~~~~~  234 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLAN----------RT---------IEKAQKITSAFR----NASAHYLS  234 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEC----------CC---------HHHHHHHHHHhc----CCeEecHH
Confidence            46789999999999999999999999999999964          32         135555555432    12221111


Q ss_pred             cCCCCCcchHhhhccCcEEEEccCChH
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLDNLD  115 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~  115 (410)
                             ...+.+.++|+||+|+..+.
T Consensus       235 -------~l~~~l~~aDiVI~aT~a~~  254 (414)
T PRK13940        235 -------ELPQLIKKADIIIAAVNVLE  254 (414)
T ss_pred             -------HHHHHhccCCEEEECcCCCC
Confidence                   11366889999999987643

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.56  E-value=0.011  Score=57.74  Aligned_cols=165  Identities=15%  Similarity=0.195  Sum_probs=86.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCc---cccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLN---RQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~---Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      ++|.|||+|.+|+.++.+|++.|.. ++++|.+.=......   ++.+=+...-|....+...+.+.++.    +     
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~----~-----   75 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVD-VLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR----F-----   75 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCE-EEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE----e-----
Confidence            4899999999999999999999975 999985543222100   00000000112211111112221111    1     


Q ss_pred             CCCCCcchHhhhccCcEEEEcc-CChHHHHHHHHHHHHC----CCcEEEecccCcc-ceEEEEeCCCCccccccCCCCCC
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAA----DVPLVESGTTGFL-GQVTVHVKGKTECYECQPKPAPK  163 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~-Dn~~~r~~i~~~c~~~----~~p~i~~g~~G~~-G~v~~~~~~~t~c~~C~~~~~~~  163 (410)
                        . ..+  +-++++|+||.|+ ++.+.+..+-....+.    +..+. +.+.+.. ..+........-+....+-.++.
T Consensus        76 --~-~~~--~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~-snTS~~~~~~la~~~~~~~r~~g~hf~~P~~  149 (286)
T PRK07819         76 --T-TDL--GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLA-SNTSSIPIMKLAAATKRPGRVLGLHFFNPVP  149 (286)
T ss_pred             --e-CCH--HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEE-ECCCCCCHHHHHhhcCCCccEEEEecCCCcc
Confidence              1 111  2368999999986 5566666554443333    33333 3333221 11111111112233333333444


Q ss_pred             CCCceeeccCCCcchHHHHHHHHHHHHHHhC
Q 015243          164 TYPVCTITSTPSKFVHCIVWAKDLLFAKLFG  194 (410)
Q Consensus       164 ~~p~cti~~~p~~~~h~i~~a~~~~f~~~f~  194 (410)
                      ..|..++..-+.+....+++++. ++....+
T Consensus       150 ~~~lvElv~~~~T~~~~~~~~~~-~~~~~lg  179 (286)
T PRK07819        150 VLPLVELVPTLVTSEATVARAEE-FASDVLG  179 (286)
T ss_pred             cCceEEEeCCCCCCHHHHHHHHH-HHHHhCC
Confidence            55777888888888899999998 4454444

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=96.48  E-value=0.011  Score=57.42  Aligned_cols=74  Identities=20%  Similarity=0.373  Sum_probs=52.0

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      +.+++|+|+|+||+|..+++.|...|+.++++++.+                   ..|++.+++.+....+ +.+   ..
T Consensus       121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~-------------------~~~a~~l~~~~~~~~~-~~~---~~  177 (278)
T PRK00258        121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRT-------------------VERAEELAKLFGALGK-AEL---DL  177 (278)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhccc-eee---cc
Confidence            567899999999999999999999999999998632                   2355556655543221 121   00


Q ss_pred             CCCCCcchHhhhccCcEEEEccC
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                      .      ..+.+.++|+||+|+-
T Consensus       178 ~------~~~~~~~~DivInaTp  194 (278)
T PRK00258        178 E------LQEELADFDLIINATS  194 (278)
T ss_pred             c------chhccccCCEEEECCc
Confidence            1      1244578999999974

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.47  E-value=0.011  Score=55.08  Aligned_cols=98  Identities=15%  Similarity=0.271  Sum_probs=69.5

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      .|.+++|+|||.|.+|..=++.|..+|.. ++++-++. +                 +.   +...+.+ +   ++....
T Consensus         9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga~-v~Vvs~~~-~-----------------~e---l~~~~~~-~---~i~~~~   62 (210)
T COG1648           9 DLEGKKVLVVGGGSVALRKARLLLKAGAD-VTVVSPEF-E-----------------PE---LKALIEE-G---KIKWIE   62 (210)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhcCCE-EEEEcCCc-c-----------------HH---HHHHHHh-c---Ccchhh
Confidence            46789999999999999999999999955 77765433 1                 11   1111111 1   132222


Q ss_pred             cCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEeccc
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT  137 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~  137 (410)
                           ..+..+.+..+++||.|+|+.+....+.+.|..+++|+-.+.--
T Consensus        63 -----~~~~~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~D~p  106 (210)
T COG1648          63 -----REFDAEDLDDAFLVIAATDDEELNERIAKAARERRILVNVVDDP  106 (210)
T ss_pred             -----cccChhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCceeccCCc
Confidence                 22344556679999999999999999999999999987766543

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=96.45  E-value=0.012  Score=57.19  Aligned_cols=75  Identities=24%  Similarity=0.387  Sum_probs=53.7

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      ..++++|+|+||.+-.++..|+..|+.+|+|++          |.         ..|++.+++.+.+..+.+......  
T Consensus       125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~N----------Rt---------~~ra~~La~~~~~~~~~~~~~~~~--  183 (283)
T COG0169         125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVN----------RT---------RERAEELADLFGELGAAVEAAALA--  183 (283)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEe----------CC---------HHHHHHHHHHhhhccccccccccc--
Confidence            358899999999999999999999999999975          22         357888888887776522221111  


Q ss_pred             CCCCcchHhhhccCcEEEEccC
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                        +.    +-..++|+||+|+.
T Consensus       184 --~~----~~~~~~dliINaTp  199 (283)
T COG0169         184 --DL----EGLEEADLLINATP  199 (283)
T ss_pred             --cc----ccccccCEEEECCC
Confidence              10    11116899999974

>PRK04148 hypothetical protein; Provisional

Probab=96.44  E-value=0.043  Score=47.34  Aligned_cols=96  Identities=25%  Similarity=0.409  Sum_probs=72.0

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      ++.+|++||+| -|..+++.|+..|. .++.+|.+.                   ..++.+    ++.    .+.+...+
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~-------------------~aV~~a----~~~----~~~~v~dD   66 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINE-------------------KAVEKA----KKL----GLNAFVDD   66 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHH----HHh----CCeEEECc
Confidence            34679999999 99999999999996 688888332                   122222    222    24556666


Q ss_pred             CCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEeccc
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT  137 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~  137 (410)
                      +.+.  +.++++++|+|....-..+....+-+++.+.+.+++-.-..
T Consensus        67 lf~p--~~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~i~~l~  111 (134)
T PRK04148         67 LFNP--NLEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLIIKPLS  111 (134)
T ss_pred             CCCC--CHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence            6554  45789999999999988999999999999999998865433

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.43  E-value=0.016  Score=59.91  Aligned_cols=95  Identities=22%  Similarity=0.229  Sum_probs=58.6

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      +++++|+|+|+|++|.++++.|+..|. +++++|.+.-+                  ..+...+.+.+.    .+.....
T Consensus         3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~~------------------~~~~~~~~l~~~----~~~~~~~   59 (450)
T PRK14106          3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEED------------------QLKEALEELGEL----GIELVLG   59 (450)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchH------------------HHHHHHHHHHhc----CCEEEeC
Confidence            678999999999999999999999996 59998865310                  111112233322    2233333


Q ss_pred             CCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEE
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVE  133 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~  133 (410)
                      ...     .+...++|+||.+....... -+-..|++.++|++.
T Consensus        60 ~~~-----~~~~~~~d~vv~~~g~~~~~-~~~~~a~~~~i~~~~   97 (450)
T PRK14106         60 EYP-----EEFLEGVDLVVVSPGVPLDS-PPVVQAHKKGIEVIG   97 (450)
T ss_pred             Ccc-----hhHhhcCCEEEECCCCCCCC-HHHHHHHHCCCcEEe
Confidence            332     13457899999987543222 234455666666553

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.42  E-value=0.012  Score=57.18  Aligned_cols=32  Identities=34%  Similarity=0.636  Sum_probs=28.7

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .+|.|+|+|.+|+.++..|+..|. +++++|.+
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~   35 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDIS   35 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence            579999999999999999999996 59999854

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.35  E-value=0.033  Score=54.71  Aligned_cols=32  Identities=25%  Similarity=0.549  Sum_probs=28.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ++|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~   36 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVM   36 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            579999999999999999999996 58888854

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.31  E-value=0.019  Score=56.73  Aligned_cols=83  Identities=25%  Similarity=0.347  Sum_probs=55.6

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      +.+.+|+|+|+|.+|..+++.|...|..+++++|.+.                   .|++.+++.+   . . .+.... 
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~-------------------~ra~~la~~~---g-~-~~~~~~-  230 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY-------------------ERAEELAKEL---G-G-NAVPLD-  230 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH-------------------HHHHHHHHHc---C-C-eEEeHH-
Confidence            5789999999999999999999999999999987432                   3444343332   1 1 221110 


Q ss_pred             CCCCCcchHhhhccCcEEEEccCChHHHHHHHHH
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL  123 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~  123 (410)
                            ...+.+.++|+||.|+.+......+...
T Consensus       231 ------~~~~~l~~aDvVi~at~~~~~~~~~~~~  258 (311)
T cd05213         231 ------ELLELLNEADVVISATGAPHYAKIVERA  258 (311)
T ss_pred             ------HHHHHHhcCCEEEECCCCCchHHHHHHH
Confidence                  1234567899999999876663333333

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.25  E-value=0.011  Score=53.11  Aligned_cols=35  Identities=26%  Similarity=0.367  Sum_probs=30.8

Q ss_pred             HHhCCcEEEECCcHH-HHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVGAGGI-GCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG~Ggi-G~ev~knLa~~Gv~~i~liD~   44 (410)
                      .|.+++|+|+|+|.+ |..++++|...|+ ++++++.
T Consensus        41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r   76 (168)
T cd01080          41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS   76 (168)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence            478999999999985 8889999999998 5888873

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK10637 cysG siroheme synthase; Provisional

Probab=96.21  E-value=0.044  Score=57.10  Aligned_cols=96  Identities=10%  Similarity=0.122  Sum_probs=70.4

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      .|++++|+|||.|.++..=++.|...|. +++++-++.            .             +.++++-..-+|+...
T Consensus         9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~------------~-------------~~~~~l~~~~~i~~~~   62 (457)
T PRK10637          9 QLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAF------------I-------------PQFTAWADAGMLTLVE   62 (457)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCC------------C-------------HHHHHHHhCCCEEEEe
Confidence            4789999999999999999999999996 588875431            1             0111111122455554


Q ss_pred             cCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEec
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g  135 (410)
                      ..+     ..+.++++++||.|+|+.+.-..+.+.|+..++++-.+.
T Consensus        63 ~~~-----~~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN~~d  104 (457)
T PRK10637         63 GPF-----DESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCNVVD  104 (457)
T ss_pred             CCC-----ChHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEEECC
Confidence            444     345678999999999999999999999999998765544

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=96.10  E-value=0.025  Score=55.68  Aligned_cols=73  Identities=22%  Similarity=0.337  Sum_probs=50.2

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCC-cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC----CCeEEEE
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP----QMSITAH   87 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~-~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np----~v~i~~~   87 (410)
                      ++|.|+|+|++|+.++..|+..|+. +|.|+|.+                   ..|++..+.-+.+..+    .+.+.. 
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~-------------------~~~~~~~a~dL~~~~~~~~~~~~i~~-   60 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDIN-------------------EEKAEGEALDLEDALAFLPSPVKIKA-   60 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------cchhhHhHhhHHHHhhccCCCeEEEc-
Confidence            3799999999999999999999985 89999842                   2344444555544321    222221 


Q ss_pred             ccCCCCCcchHhhhccCcEEEEccCC
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGLDN  113 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn  113 (410)
                       .       +.+-++++|+||.++..
T Consensus        61 -~-------~~~~l~~aDIVIitag~   78 (306)
T cd05291          61 -G-------DYSDCKDADIVVITAGA   78 (306)
T ss_pred             -C-------CHHHhCCCCEEEEccCC
Confidence             1       11336899999998764

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.07  E-value=0.052  Score=52.64  Aligned_cols=157  Identities=17%  Similarity=0.240  Sum_probs=79.5

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC---------Ce
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ---------MS   83 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~---------v~   83 (410)
                      ++|.|||+|-+|+.++..|+..|. +++++|.+.-.   +.+         ++...+...+.+.+...-         .+
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~---~~~---------~~~~i~~~l~~~~~~g~~~~~~~~~~~~~   70 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAA---VDR---------GLATITKSLDRLVKKGKMTEADKEAALAR   70 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHH---HHH---------HHHHHHHHHHHHHHcCCCCHHHHHHHHhC
Confidence            579999999999999999999997 68898854322   111         111111111111111100         01


Q ss_pred             EEEEccCCCCCcchHhhhccCcEEEEcc-CChHHHHH-HHHHHHHCC-CcEEEecccCccce-EEEEeCCCCccccccCC
Q 015243           84 ITAHHANVKDPKFNVEFFKQFNVVLNGL-DNLDARRH-VNRLCLAAD-VPLVESGTTGFLGQ-VTVHVKGKTECYECQPK  159 (410)
Q Consensus        84 i~~~~~~i~~~~~~~~~~~~~DvVi~a~-Dn~~~r~~-i~~~c~~~~-~p~i~~g~~G~~G~-v~~~~~~~t~c~~C~~~  159 (410)
                      +...     . .+  +-++++|+||.|+ ++...... +.++..... -.++.+.+.|..-. +.-..+....+..+++-
T Consensus        71 l~~~-----~-~~--~~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~  142 (282)
T PRK05808         71 ITGT-----T-DL--DDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFF  142 (282)
T ss_pred             eEEe-----C-CH--HHhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeecc
Confidence            1111     1 11  2268899999997 45555433 333332211 12445555543321 11111222234444443


Q ss_pred             CCCCCCCceeeccCCCcchHHHHHHHHHHHHH
Q 015243          160 PAPKTYPVCTITSTPSKFVHCIVWAKDLLFAK  191 (410)
Q Consensus       160 ~~~~~~p~cti~~~p~~~~h~i~~a~~~~f~~  191 (410)
                      .+....|..++...+......+..+++ +++.
T Consensus       143 ~P~~~~~~vev~~g~~t~~e~~~~~~~-l~~~  173 (282)
T PRK05808        143 NPVPVMKLVEIIRGLATSDATHEAVEA-LAKK  173 (282)
T ss_pred             CCcccCccEEEeCCCCCCHHHHHHHHH-HHHH
Confidence            333334555666666666666777776 4553

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=96.07  E-value=0.032  Score=58.46  Aligned_cols=88  Identities=18%  Similarity=0.245  Sum_probs=70.5

Q ss_pred             HHHHHHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCe
Q 015243            5 RQLEAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMS   83 (410)
Q Consensus         5 e~q~~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~   83 (410)
                      +.+.-+.+++|+|-|+ |++|+|+++.++..+.++|.++|.|.                   .|-..+...+++..|..+
T Consensus       243 ~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E-------------------~~~~~i~~el~~~~~~~~  303 (588)
T COG1086         243 LIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDE-------------------YKLYLIDMELREKFPELK  303 (588)
T ss_pred             HHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCch-------------------HHHHHHHHHHHhhCCCcc
Confidence            4567889999999985 67999999999999999999987543                   455567778888888889


Q ss_pred             EEEEccCCCCCcchHhhhcc--CcEEEEcc
Q 015243           84 ITAHHANVKDPKFNVEFFKQ--FNVVLNGL  111 (410)
Q Consensus        84 i~~~~~~i~~~~~~~~~~~~--~DvVi~a~  111 (410)
                      +..+-.++.+..--...+++  .|+|+-|.
T Consensus       304 ~~~~igdVrD~~~~~~~~~~~kvd~VfHAA  333 (588)
T COG1086         304 LRFYIGDVRDRDRVERAMEGHKVDIVFHAA  333 (588)
T ss_pred             eEEEecccccHHHHHHHHhcCCCceEEEhh
Confidence            99998888665444556677  89998863

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.04  E-value=0.0087  Score=54.30  Aligned_cols=163  Identities=15%  Similarity=0.266  Sum_probs=81.9

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCcccc---CCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQF---LFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~---lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      +|.|||+|.+|..++-.+++.|.. ++++|.+.-.....-+..   +=+..+-|+...+.+...+.++.       +..+
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-------~~~d   72 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYE-VTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-------FTTD   72 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSE-EEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-------EESS
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCc-EEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-------cccC
Confidence            689999999999999999999965 999997554322211110   00000112222222333333222       1111


Q ss_pred             CCCCcchHhhhccCcEEEEcc-CChHHHHHHHHHHHHC--CCcEEEecccCcc-ceEEEEeCCCCccccccCCCCCCCCC
Q 015243           91 VKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAA--DVPLVESGTTGFL-GQVTVHVKGKTECYECQPKPAPKTYP  166 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~-Dn~~~r~~i~~~c~~~--~~p~i~~g~~G~~-G~v~~~~~~~t~c~~C~~~~~~~~~p  166 (410)
                      +      .+.. ++|+||.|+ ++.+.+..+-+.....  .-.++.+.+.++. ..+....+...-+...++-.++...|
T Consensus        73 l------~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~  145 (180)
T PF02737_consen   73 L------EEAV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMP  145 (180)
T ss_dssp             G------GGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--
T ss_pred             H------HHHh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCc
Confidence            1      2333 899999986 5666666555544432  1234444444322 00100011112233444444556678


Q ss_pred             ceeeccCCCcchHHHHHHHHHHHHHH
Q 015243          167 VCTITSTPSKFVHCIVWAKDLLFAKL  192 (410)
Q Consensus       167 ~cti~~~p~~~~h~i~~a~~~~f~~~  192 (410)
                      ...+...|.+..-.+.++.+ +++.+
T Consensus       146 lVEvv~~~~T~~~~~~~~~~-~~~~~  170 (180)
T PF02737_consen  146 LVEVVPGPKTSPETVDRVRA-LLRSL  170 (180)
T ss_dssp             EEEEEE-TTS-HHHHHHHHH-HHHHT
T ss_pred             eEEEeCCCCCCHHHHHHHHH-HHHHC
Confidence            88998889999999999998 45543

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]

Probab=95.93  E-value=0.022  Score=53.22  Aligned_cols=114  Identities=23%  Similarity=0.347  Sum_probs=75.9

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      +.+++++++| +||||-+++|.|..-|+..+.+.|               +.+.      -.+...|+++||.+++..+.
T Consensus         3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~---------------~~En------~~a~akL~ai~p~~~v~F~~   61 (261)
T KOG4169|consen    3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDD---------------SEEN------PEAIAKLQAINPSVSVIFIK   61 (261)
T ss_pred             ccCceEEEecCCchhhHHHHHHHHHcCchheeehh---------------hhhC------HHHHHHHhccCCCceEEEEE
Confidence            4678888885 999999999999999999888765               1111      23556789999999999999


Q ss_pred             cCCCCCcchHh-------hhccCcEEEEcc---CC--hHHHHHHHHHHH----HCCCcEEEecccCccceEE
Q 015243           89 ANVKDPKFNVE-------FFKQFNVVLNGL---DN--LDARRHVNRLCL----AADVPLVESGTTGFLGQVT  144 (410)
Q Consensus        89 ~~i~~~~~~~~-------~~~~~DvVi~a~---Dn--~~~r~~i~~~c~----~~~~p~i~~g~~G~~G~v~  144 (410)
                      .++++......       -+...|++|+..   |+  .+.-..+|-...    ....|+.+-.-.|..|-+.
T Consensus        62 ~DVt~~~~~~~~f~ki~~~fg~iDIlINgAGi~~dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIv  133 (261)
T KOG4169|consen   62 CDVTNRGDLEAAFDKILATFGTIDILINGAGILDDKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIV  133 (261)
T ss_pred             eccccHHHHHHHHHHHHHHhCceEEEEcccccccchhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEE
Confidence            99865321111       256679999942   22  222222333222    2345777766666666543

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.84  E-value=0.11  Score=49.85  Aligned_cols=88  Identities=19%  Similarity=0.240  Sum_probs=52.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC--CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGF--QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv--~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      .+|.|||+|.+|..++..|...|.  ..+.++|.+.                   .+++.+++.   +  .+.+      
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~-------------------~~~~~~~~~---~--g~~~------   52 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSP-------------------EKRAALAEE---Y--GVRA------   52 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCH-------------------HHHHHHHHh---c--CCee------
Confidence            579999999999999999999984  3466655221                   122222221   1  1221      


Q ss_pred             CCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEE
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVE  133 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~  133 (410)
                       ..  ...+...++|+||.|+-....+..+..+....+..++.
T Consensus        53 -~~--~~~~~~~~advVil~v~~~~~~~v~~~l~~~~~~~vvs   92 (267)
T PRK11880         53 -AT--DNQEAAQEADVVVLAVKPQVMEEVLSELKGQLDKLVVS   92 (267)
T ss_pred             -cC--ChHHHHhcCCEEEEEcCHHHHHHHHHHHHhhcCCEEEE
Confidence             11  12344678999999987665666555544333444443

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=95.82  E-value=0.012  Score=55.48  Aligned_cols=37  Identities=27%  Similarity=0.532  Sum_probs=34.7

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCC--cEEEEeCC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~--~i~liD~D   45 (410)
                      .+++++|+|+|+|+.|..+++.|+..|++  +|+++|.+
T Consensus        22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            47889999999999999999999999999  99999966

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=95.80  E-value=0.07  Score=44.92  Aligned_cols=95  Identities=20%  Similarity=0.293  Sum_probs=56.0

Q ss_pred             cEEEEC-CcHHHHHHHHHHHHhCC-CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           14 KVLMVG-AGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        14 ~VlvvG-~GgiG~ev~knLa~~Gv-~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      ||.||| .|-+|.++++.|...-- .-+.++..               ....|+.=.....    .......+....   
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~---------------~~~~g~~~~~~~~----~~~~~~~~~~~~---   58 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSS---------------SRSAGKPLSEVFP----HPKGFEDLSVED---   58 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEES---------------TTTTTSBHHHTTG----GGTTTEEEBEEE---
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeee---------------ccccCCeeehhcc----ccccccceeEee---
Confidence            799999 99999999999998322 22333321               1125553222211    111111222211   


Q ss_pred             CCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEec
Q 015243           92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (410)
Q Consensus        92 ~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g  135 (410)
                          .+.+.+.+.|+|+.|+++..++.+...+ .+.++++|+.+
T Consensus        59 ----~~~~~~~~~Dvvf~a~~~~~~~~~~~~~-~~~g~~ViD~s   97 (121)
T PF01118_consen   59 ----ADPEELSDVDVVFLALPHGASKELAPKL-LKAGIKVIDLS   97 (121)
T ss_dssp             ----TSGHHHTTESEEEE-SCHHHHHHHHHHH-HHTTSEEEESS
T ss_pred             ----cchhHhhcCCEEEecCchhHHHHHHHHH-hhCCcEEEeCC
Confidence                1234459999999999986666665555 78899999864

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=95.73  E-value=0.049  Score=53.90  Aligned_cols=75  Identities=21%  Similarity=0.274  Sum_probs=50.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCC-cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCC-eEEEEcc
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM-SITAHHA   89 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~-~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v-~i~~~~~   89 (410)
                      ..||.|+|+|.+|+.++-.|+..|+. +|.|+|-                   ...|++..+.-+....|.. ++.....
T Consensus         6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~-------------------~~~~~~g~~~Dl~~~~~~~~~~~i~~~   66 (315)
T PRK00066          6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI-------------------NKEKAEGDAMDLSHAVPFTSPTKIYAG   66 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CCchhHHHHHHHHhhccccCCeEEEeC
Confidence            46999999999999999999999985 7999983                   2334555555555554422 2222211


Q ss_pred             CCCCCcchHhhhccCcEEEEccC
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                      .       .+-++++|+||.+..
T Consensus        67 ~-------~~~~~~adivIitag   82 (315)
T PRK00066         67 D-------YSDCKDADLVVITAG   82 (315)
T ss_pred             C-------HHHhCCCCEEEEecC
Confidence            1       233799999998654

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=95.72  E-value=0.047  Score=61.84  Aligned_cols=99  Identities=21%  Similarity=0.285  Sum_probs=59.7

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCC-C------------cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGF-Q------------DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK   77 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv-~------------~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~   77 (410)
                      +.++|+|+|+|.+|..+++.|++.+- .            .+++.|.+                   ..+++.+++.   
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~-------------------~~~a~~la~~---  625 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY-------------------LKDAKETVEG---  625 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCC-------------------HHHHHHHHHh---
Confidence            46799999999999999999997642 2            24444422                   2333333332   


Q ss_pred             hCCCCeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEec
Q 015243           78 FRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (410)
Q Consensus        78 ~np~v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g  135 (410)
                       .|+++  +..-++.+...-..+++++|+||+|+.. ..-..+.+.|.++++.+++..
T Consensus       626 -~~~~~--~v~lDv~D~e~L~~~v~~~DaVIsalP~-~~H~~VAkaAieaGkHvv~ek  679 (1042)
T PLN02819        626 -IENAE--AVQLDVSDSESLLKYVSQVDVVISLLPA-SCHAVVAKACIELKKHLVTAS  679 (1042)
T ss_pred             -cCCCc--eEEeecCCHHHHHHhhcCCCEEEECCCc-hhhHHHHHHHHHcCCCEEECc
Confidence             24332  2222233222223445789999999865 233456677777777777653

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=95.71  E-value=0.038  Score=50.46  Aligned_cols=82  Identities=21%  Similarity=0.260  Sum_probs=53.7

Q ss_pred             HHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .+++++++|+|+ |++|..+++.|+..| .++++++.+                   ..|++.+++.+.+.. ...+...
T Consensus        25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~~~~~~   83 (194)
T cd01078          25 DLKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRD-------------------LERAQKAADSLRARF-GEGVGAV   83 (194)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCC-------------------HHHHHHHHHHHHhhc-CCcEEEe
Confidence            457789999996 999999999999988 478887532                   235555666554322 2333322


Q ss_pred             ccCCCCCcchHhhhccCcEEEEccCC
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGLDN  113 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn  113 (410)
                        ...+.....+.+.++|+||+++..
T Consensus        84 --~~~~~~~~~~~~~~~diVi~at~~  107 (194)
T cd01078          84 --ETSDDAARAAAIKGADVVFAAGAA  107 (194)
T ss_pred             --eCCCHHHHHHHHhcCCEEEECCCC
Confidence              121111123567889999998754

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=95.65  E-value=0.049  Score=47.37  Aligned_cols=75  Identities=24%  Similarity=0.371  Sum_probs=51.7

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCC-cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCC--eEEEEc
Q 015243           13 AKVLMVGA-GGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM--SITAHH   88 (410)
Q Consensus        13 ~~VlvvG~-GgiG~ev~knLa~~Gv~-~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v--~i~~~~   88 (410)
                      .||.|||+ |.+|+.++-.|+..|+. +|.|+|.+                   ..|++..+.-+....+..  .+....
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~-------------------~~~~~g~a~Dl~~~~~~~~~~~~i~~   61 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN-------------------EDKAEGEALDLSHASAPLPSPVRITS   61 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS-------------------HHHHHHHHHHHHHHHHGSTEEEEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccC-------------------cccceeeehhhhhhhhhccccccccc
Confidence            48999999 99999999999999985 59999822                   225555555555543322  333332


Q ss_pred             cCCCCCcchHhhhccCcEEEEccCC
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLDN  113 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~Dn  113 (410)
                      ..       .+-++++|+||.+...
T Consensus        62 ~~-------~~~~~~aDivvitag~   79 (141)
T PF00056_consen   62 GD-------YEALKDADIVVITAGV   79 (141)
T ss_dssp             SS-------GGGGTTESEEEETTST
T ss_pred             cc-------ccccccccEEEEeccc
Confidence            21       2457899999997644

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=95.62  E-value=0.17  Score=49.31  Aligned_cols=33  Identities=36%  Similarity=0.623  Sum_probs=28.9

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      ++|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~   37 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDP   37 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence            579999999999999999999995 588888543

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=95.60  E-value=0.023  Score=55.34  Aligned_cols=78  Identities=24%  Similarity=0.397  Sum_probs=46.2

Q ss_pred             EEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC--C--eEEEEcc
Q 015243           15 VLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ--M--SITAHHA   89 (410)
Q Consensus        15 VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~--v--~i~~~~~   89 (410)
                      |||-| +|.+|+|+++.|+..|..+|.++|.|--...++                   .+.+++..|+  +  .+.....
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l-------------------~~~l~~~~~~~~v~~~~~~vig   61 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYEL-------------------ERELRSRFPDPKVRFEIVPVIG   61 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHH-------------------HHHCHHHC--TTCEEEEE--CT
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHH-------------------HHHHhhcccccCcccccCceee
Confidence            67776 889999999999999999999999765444443                   3334333333  3  2334455


Q ss_pred             CCCCCcchHhhhc--cCcEEEEcc
Q 015243           90 NVKDPKFNVEFFK--QFNVVLNGL  111 (410)
Q Consensus        90 ~i~~~~~~~~~~~--~~DvVi~a~  111 (410)
                      ++.+...-...++  +.|+|+-|.
T Consensus        62 Dvrd~~~l~~~~~~~~pdiVfHaA   85 (293)
T PF02719_consen   62 DVRDKERLNRIFEEYKPDIVFHAA   85 (293)
T ss_dssp             SCCHHHHHHHHTT--T-SEEEE--
T ss_pred             cccCHHHHHHHHhhcCCCEEEECh
Confidence            6644333344556  678888763

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=95.57  E-value=0.14  Score=44.49  Aligned_cols=35  Identities=40%  Similarity=0.587  Sum_probs=30.9

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +.+++|+|+|+|++|..+++.|...|...++++|.
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r   51 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNR   51 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcC
Confidence            45789999999999999999999998677888873

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.52  E-value=0.13  Score=50.13  Aligned_cols=33  Identities=27%  Similarity=0.589  Sum_probs=29.6

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      ++|.|+|+|.+|+.++..|+..|. +++++|.+.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~   36 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE   36 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence            579999999999999999999997 599998654

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.52  E-value=0.026  Score=43.78  Aligned_cols=54  Identities=26%  Similarity=0.377  Sum_probs=38.7

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR   79 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~n   79 (410)
                      ||+|||.|.+|+|++..|+..|. +++|++...-          +. ...+..=++.+.+.+++.+
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~----------~~-~~~~~~~~~~~~~~l~~~g   54 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR----------LL-PGFDPDAAKILEEYLRKRG   54 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS----------SS-TTSSHHHHHHHHHHHHHTT
T ss_pred             CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch----------hh-hhcCHHHHHHHHHHHHHCC
Confidence            68999999999999999999995 6888874331          11 2334444556667777663

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=95.50  E-value=0.063  Score=52.95  Aligned_cols=72  Identities=17%  Similarity=0.273  Sum_probs=49.6

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCC-CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC-----CCeEEEE
Q 015243           14 KVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP-----QMSITAH   87 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np-----~v~i~~~   87 (410)
                      ||.|||+|.+|+.++-.|+..|+ ++|.|+|-                   -+.|++..+.-|....+     .+++.  
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di-------------------~~~~a~g~a~DL~~~~~~~~~~~~~i~--   59 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV-------------------NEGVAEGEALDFHHATALTYSTNTKIR--   59 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CcchhhHHHHHHHhhhccCCCCCEEEE--
Confidence            68999999999999999999998 57999982                   23344444445555333     23333  


Q ss_pred             ccCCCCCcchHhhhccCcEEEEccCC
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGLDN  113 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn  113 (410)
                      ...       .+-++++|+||.+...
T Consensus        60 ~~~-------y~~~~~aDivvitaG~   78 (307)
T cd05290          60 AGD-------YDDCADADIIVITAGP   78 (307)
T ss_pred             ECC-------HHHhCCCCEEEECCCC
Confidence            221       3557999999987543

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=95.50  E-value=0.063  Score=53.31  Aligned_cols=35  Identities=29%  Similarity=0.577  Sum_probs=31.5

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ++..||.|||+|.+|+.++..++..|...+.|+|-
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi   38 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDI   38 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeC
Confidence            45689999999999999999999999866999984

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=95.49  E-value=0.094  Score=44.50  Aligned_cols=98  Identities=28%  Similarity=0.310  Sum_probs=60.4

Q ss_pred             cEEEECC-cHHHHHHHHHHHH-hCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           14 KVLMVGA-GGIGCELLKTLAL-SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        14 ~VlvvG~-GgiG~ev~knLa~-~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      ||.|+|+ |-+|.++++.+.. .|+.=.-.+|...   +.      +-..|+|.        .+..-...+.+.      
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~---~~------~~g~d~g~--------~~~~~~~~~~v~------   58 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP---SA------KVGKDVGE--------LAGIGPLGVPVT------   58 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT---ST------TTTSBCHH--------HCTSST-SSBEB------
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC---cc------cccchhhh--------hhCcCCcccccc------
Confidence            7999999 9999999999998 6665555566333   00      11234431        111111122221      


Q ss_pred             CCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCc
Q 015243           92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGF  139 (410)
Q Consensus        92 ~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~  139 (410)
                         ....+.+..+|+||+.+ ++++-...-++|.++++|++-+- .|+
T Consensus        59 ---~~l~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~ViGT-TG~  101 (124)
T PF01113_consen   59 ---DDLEELLEEADVVIDFT-NPDAVYDNLEYALKHGVPLVIGT-TGF  101 (124)
T ss_dssp             ---S-HHHHTTH-SEEEEES--HHHHHHHHHHHHHHT-EEEEE--SSS
T ss_pred             ---hhHHHhcccCCEEEEcC-ChHHhHHHHHHHHhCCCCEEEEC-CCC
Confidence               11346677799999998 77888888889999999998754 344

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PLN00203 glutamyl-tRNA reductase

Probab=95.42  E-value=0.04  Score=58.15  Aligned_cols=78  Identities=21%  Similarity=0.354  Sum_probs=52.7

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      |.+++|+|||+|.+|..+++.|...|+.++++++.+                   ..|++.+++.+    +++.+.... 
T Consensus       264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs-------------------~era~~La~~~----~g~~i~~~~-  319 (519)
T PLN00203        264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS-------------------EERVAALREEF----PDVEIIYKP-  319 (519)
T ss_pred             CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC-------------------HHHHHHHHHHh----CCCceEeec-
Confidence            557999999999999999999999999999997622                   12444444332    233322211 


Q ss_pred             CCCCCcchHhhhccCcEEEEccCChH
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLDNLD  115 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~  115 (410)
                       +.   ...+.+.++|+||.|+....
T Consensus       320 -~~---dl~~al~~aDVVIsAT~s~~  341 (519)
T PLN00203        320 -LD---EMLACAAEADVVFTSTSSET  341 (519)
T ss_pred             -Hh---hHHHHHhcCCEEEEccCCCC
Confidence             11   12356789999999986543

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=95.41  E-value=0.15  Score=49.51  Aligned_cols=106  Identities=16%  Similarity=0.239  Sum_probs=70.0

Q ss_pred             HHHhCCcEEEECCcHHHHHHHHHHHHh----CC------CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh
Q 015243            8 EAIKGAKVLMVGAGGIGCELLKTLALS----GF------QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK   77 (410)
Q Consensus         8 ~~L~~~~VlvvG~GgiG~ev~knLa~~----Gv------~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~   77 (410)
                      .+|.+.||+++|+|+-|.-+++.|...    |+      ++|.++|.+-+=..+  |      .|.-..|..    ..+.
T Consensus        21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~--r------~~l~~~~~~----~a~~   88 (279)
T cd05312          21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKD--R------KDLTPFKKP----FARK   88 (279)
T ss_pred             CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCC--C------CcchHHHHH----HHhh
Confidence            468899999999999999999999988    99      699999976542211  1      123233333    2222


Q ss_pred             hCCCCeEEEEccCCCCCcchHhhhc--cCcEEEEccC--ChHHHHHHHHHHHHCCCcEEEecc
Q 015243           78 FRPQMSITAHHANVKDPKFNVEFFK--QFNVVLNGLD--NLDARRHVNRLCLAADVPLVESGT  136 (410)
Q Consensus        78 ~np~v~i~~~~~~i~~~~~~~~~~~--~~DvVi~a~D--n~~~r~~i~~~c~~~~~p~i~~g~  136 (410)
                      .++        ...   ....+.++  +.|++|.+..  ..-.+..+..++.....|+|..-+
T Consensus        89 ~~~--------~~~---~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS  140 (279)
T cd05312          89 DEE--------KEG---KSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALS  140 (279)
T ss_pred             cCc--------ccC---CCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECC
Confidence            332        001   11245566  7788888653  344677788888888888887643

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=95.29  E-value=0.25  Score=52.05  Aligned_cols=164  Identities=16%  Similarity=0.204  Sum_probs=80.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~   92 (410)
                      ++|.|||+|.+|+.++.+|+..|. .+++.|.+.-....+.+            ....+.+.+..+.. .... ...++.
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~~~~~~~~~~------------~~~~~~~~~~~l~~-~~~~-~~g~i~   69 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPHPEAERIIGE------------VLANAERAYAMLTD-APLP-PEGRLT   69 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHH------------HHHHHHHHHhhhcc-chhh-hhhceE
Confidence            479999999999999999999998 58898864322211100            00000111111100 0000 000110


Q ss_pred             CCcchHhhhccCcEEEEccCC-hHHHHH-HHHHHHH-CCCcEEEecccCccce-EEEEeCCCCccccccCCCCCCCCCce
Q 015243           93 DPKFNVEFFKQFNVVLNGLDN-LDARRH-VNRLCLA-ADVPLVESGTTGFLGQ-VTVHVKGKTECYECQPKPAPKTYPVC  168 (410)
Q Consensus        93 ~~~~~~~~~~~~DvVi~a~Dn-~~~r~~-i~~~c~~-~~~p~i~~g~~G~~G~-v~~~~~~~t~c~~C~~~~~~~~~p~c  168 (410)
                      -.....+.++++|+|+.++-. .+.+.. +.++... ..-.+|.+.+.|..-. +.-..+....|+...+-.++...|..
T Consensus        70 ~~~~~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lv  149 (495)
T PRK07531         70 FCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLV  149 (495)
T ss_pred             eeCCHHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceE
Confidence            001123457899999998754 333433 2332211 1223677777774311 11112222334443333233334555


Q ss_pred             eeccCCCcchHHHHHHHHHHHHHH
Q 015243          169 TITSTPSKFVHCIVWAKDLLFAKL  192 (410)
Q Consensus       169 ti~~~p~~~~h~i~~a~~~~f~~~  192 (410)
                      .+..-+......+..+++ +|+.+
T Consensus       150 evv~g~~t~~e~~~~~~~-~~~~l  172 (495)
T PRK07531        150 ELVGGGKTSPETIRRAKE-ILREI  172 (495)
T ss_pred             EEcCCCCCCHHHHHHHHH-HHHHc
Confidence            555555555566788887 46553

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=95.26  E-value=0.11  Score=49.56  Aligned_cols=107  Identities=14%  Similarity=0.234  Sum_probs=68.0

Q ss_pred             HHHhCCcEEEECCcHHHHHHHHHHHHh----CC------CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh
Q 015243            8 EAIKGAKVLMVGAGGIGCELLKTLALS----GF------QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK   77 (410)
Q Consensus         8 ~~L~~~~VlvvG~GgiG~ev~knLa~~----Gv------~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~   77 (410)
                      ++|.+.||+++|+|+.|.-+++.|+.+    |+      ++|.++|.+-+=..+        ..|+-    ..-+...+.
T Consensus        21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~--------r~~l~----~~~~~~a~~   88 (255)
T PF03949_consen   21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDD--------REDLN----PHKKPFARK   88 (255)
T ss_dssp             S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTT--------TSSHS----HHHHHHHBS
T ss_pred             CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEecc--------CccCC----hhhhhhhcc
Confidence            368999999999999999999999999    99      899999976432111        11221    222344444


Q ss_pred             hCCCCeEEEEccCCCCCcchHhhhccC--cEEEEccC--ChHHHHHHHHHHHHCCCcEEEecc
Q 015243           78 FRPQMSITAHHANVKDPKFNVEFFKQF--NVVLNGLD--NLDARRHVNRLCLAADVPLVESGT  136 (410)
Q Consensus        78 ~np~v~i~~~~~~i~~~~~~~~~~~~~--DvVi~a~D--n~~~r~~i~~~c~~~~~p~i~~g~  136 (410)
                      .+|.-..          ....+-++++  |++|.+..  ..-....+..++.....|+|..-+
T Consensus        89 ~~~~~~~----------~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LS  141 (255)
T PF03949_consen   89 TNPEKDW----------GSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLS  141 (255)
T ss_dssp             SSTTT------------SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-S
T ss_pred             Ccccccc----------cCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECC
Confidence            4443211          1124556666  88888653  333577888888888899987743

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=95.22  E-value=0.074  Score=46.97  Aligned_cols=97  Identities=15%  Similarity=0.279  Sum_probs=56.2

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHH--hhCCCCeEEEEccCC
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVL--KFRPQMSITAHHANV   91 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~--~~np~v~i~~~~~~i   91 (410)
                      ||.|+|+|..|+.++..|+..| .+++|.+.|.=                   ..+.+.+.=.  ...|+.++.. .-.+
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~-------------------~~~~i~~~~~n~~~~~~~~l~~-~i~~   59 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDEE-------------------QIEEINETRQNPKYLPGIKLPE-NIKA   59 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCHH-------------------HHHHHHHHTSETTTSTTSBEET-TEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccHH-------------------HHHHHHHhCCCCCCCCCcccCc-cccc
Confidence            6899999999999999999999 56777665431                   1111111100  1123332221 1111


Q ss_pred             CCCcchHhhhccCcEEEEccCChHHHHHHHHHHH--HCCCcEEE
Q 015243           92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL--AADVPLVE  133 (410)
Q Consensus        92 ~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~--~~~~p~i~  133 (410)
                      +.  ...+.+++.|+|+.++.+...+..+.++..  +.+.+++.
T Consensus        60 t~--dl~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~  101 (157)
T PF01210_consen   60 TT--DLEEALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIIIS  101 (157)
T ss_dssp             ES--SHHHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred             cc--CHHHHhCcccEEEecccHHHHHHHHHHHhhccCCCCEEEE
Confidence            21  124567899999999988877777777654  34555654

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=95.16  E-value=0.019  Score=51.08  Aligned_cols=115  Identities=17%  Similarity=0.257  Sum_probs=60.0

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC--
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN--   90 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~--   90 (410)
                      ++|.+||+|.+|+.++++|+..|.. +++.|.+.-....+..        .|-..++..++.+++-  ++-+......  
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~-v~~~d~~~~~~~~~~~--------~g~~~~~s~~e~~~~~--dvvi~~v~~~~~   70 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYE-VTVYDRSPEKAEALAE--------AGAEVADSPAEAAEQA--DVVILCVPDDDA   70 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTE-EEEEESSHHHHHHHHH--------TTEEEESSHHHHHHHB--SEEEE-SSSHHH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCe-EEeeccchhhhhhhHH--------hhhhhhhhhhhHhhcc--cceEeecccchh
Confidence            5899999999999999999999976 7887743211111110        0111111122222222  2222222211  


Q ss_pred             C----CCCcchHhhhccCcEEEEc-cCChHHHHHHHHHHHHCCCcEEEecccCc
Q 015243           91 V----KDPKFNVEFFKQFNVVLNG-LDNLDARRHVNRLCLAADVPLVESGTTGF  139 (410)
Q Consensus        91 i----~~~~~~~~~~~~~DvVi~a-~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~  139 (410)
                      +    .... ....+..-.++|++ +-+++....+.+.+...++.++++...|.
T Consensus        71 v~~v~~~~~-i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg  123 (163)
T PF03446_consen   71 VEAVLFGEN-ILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGG  123 (163)
T ss_dssp             HHHHHHCTT-HGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESH
T ss_pred             hhhhhhhhH-HhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecc
Confidence            0    0000 11223344667764 45566777888888888888888887764

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.14  E-value=0.015  Score=56.71  Aligned_cols=33  Identities=33%  Similarity=0.660  Sum_probs=29.1

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      ++|.|||+|.+|..++.+|+..|. +++++|.+.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~   34 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQ   34 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCH
Confidence            479999999999999999999996 488988654

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.04  E-value=0.12  Score=50.72  Aligned_cols=75  Identities=12%  Similarity=0.205  Sum_probs=53.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      .++|.|+|+|.+|+.+++.|+..|. .+++.|.+.-                                         .  
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~~~-----------------------------------------~--   39 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRRSG-----------------------------------------L--   39 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCCCC-----------------------------------------C--
Confidence            4689999999999999999999996 5888875420                                         0  


Q ss_pred             CCCcchHhhhccCcEEEEccCChHHHHHHHHHHH---HCCCcEEEe
Q 015243           92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL---AADVPLVES  134 (410)
Q Consensus        92 ~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~---~~~~p~i~~  134 (410)
                          ...+..+++|+|+.++.+...+..++.+..   ..+..++++
T Consensus        40 ----~~~~~~~~advvi~~vp~~~~~~v~~~l~~~~~~~~~ivi~~   81 (308)
T PRK14619         40 ----SLAAVLADADVIVSAVSMKGVRPVAEQVQALNLPPETIIVTA   81 (308)
T ss_pred             ----CHHHHHhcCCEEEEECChHHHHHHHHHHHHhcCCCCcEEEEe
Confidence                012445789999999877666666655532   224556554

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.01  E-value=0.21  Score=48.62  Aligned_cols=33  Identities=33%  Similarity=0.563  Sum_probs=29.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      -++|.|||+|.+|..++..|+..|. .++++|.+
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~   36 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS   36 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            4689999999999999999999997 58888854

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=94.89  E-value=0.074  Score=42.44  Aligned_cols=89  Identities=22%  Similarity=0.274  Sum_probs=54.4

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCC--CcEEEE-eCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           14 KVLMVGAGGIGCELLKTLALSGF--QDIHII-DMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv--~~i~li-D~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      ||.++|+|.+|..+++.|...|+  .++.++ +.                   ...|++.+    .+..+ +.+..    
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r-------------------~~~~~~~~----~~~~~-~~~~~----   52 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR-------------------SPEKAAEL----AKEYG-VQATA----   52 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES-------------------SHHHHHHH----HHHCT-TEEES----
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC-------------------cHHHHHHH----HHhhc-ccccc----
Confidence            68999999999999999999995  345533 31                   11222222    22222 22211    


Q ss_pred             CCCCcchHhhhccCcEEEEccCChHHHHHHHHH-HHHCCCcEEEe
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL-CLAADVPLVES  134 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~-c~~~~~p~i~~  134 (410)
                          ....+.++..|+||.|+........+.+. ....++.+|+.
T Consensus        53 ----~~~~~~~~~advvilav~p~~~~~v~~~i~~~~~~~~vis~   93 (96)
T PF03807_consen   53 ----DDNEEAAQEADVVILAVKPQQLPEVLSEIPHLLKGKLVISI   93 (96)
T ss_dssp             ----EEHHHHHHHTSEEEE-S-GGGHHHHHHHHHHHHTTSEEEEE
T ss_pred             ----CChHHhhccCCEEEEEECHHHHHHHHHHHhhccCCCEEEEe
Confidence                01356778999999999876666666666 34456666654

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.89  E-value=0.2  Score=51.64  Aligned_cols=95  Identities=18%  Similarity=0.291  Sum_probs=60.2

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~   92 (410)
                      ++|+|+|+|.+|..+++.|...|.. ++++|.+.                   .+.+.++    + .  ..+.....+.+
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~-v~vid~~~-------------------~~~~~~~----~-~--~~~~~~~gd~~   53 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENND-VTVIDTDE-------------------ERLRRLQ----D-R--LDVRTVVGNGS   53 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCc-EEEEECCH-------------------HHHHHHH----h-h--cCEEEEEeCCC
Confidence            4799999999999999999998874 77887432                   1122221    1 1  12334444443


Q ss_pred             CCcchHh-hhccCcEEEEccCChHHHHHHHHHHHHC-CCcEEEe
Q 015243           93 DPKFNVE-FFKQFNVVLNGLDNLDARRHVNRLCLAA-DVPLVES  134 (410)
Q Consensus        93 ~~~~~~~-~~~~~DvVi~a~Dn~~~r~~i~~~c~~~-~~p~i~~  134 (410)
                      +...-.+ -++++|.|+.++++...-..+-..++.. +.+.+-+
T Consensus        54 ~~~~l~~~~~~~a~~vi~~~~~~~~n~~~~~~~r~~~~~~~ii~   97 (453)
T PRK09496         54 SPDVLREAGAEDADLLIAVTDSDETNMVACQIAKSLFGAPTTIA   97 (453)
T ss_pred             CHHHHHHcCCCcCCEEEEecCChHHHHHHHHHHHHhcCCCeEEE
Confidence            3221122 2678999999998877777777777775 5544433

>PRK07063 short chain dehydrogenase; Provisional

Probab=94.85  E-value=0.14  Score=48.45  Aligned_cols=65  Identities=28%  Similarity=0.413  Sum_probs=44.7

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      +|.+++++|.| .||||.++++.|+..|.. +.++|.+                   ..+.+.+++.+.+.++..++..+
T Consensus         4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~-vv~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~   63 (260)
T PRK07063          4 RLAGKVALVTGAAQGIGAAIARAFAREGAA-VALADLD-------------------AALAERAAAAIARDVAGARVLAV   63 (260)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCC-------------------HHHHHHHHHHHHhccCCceEEEE
Confidence            46788999998 589999999999999974 7776621                   23444555555554445566666


Q ss_pred             ccCCCC
Q 015243           88 HANVKD   93 (410)
Q Consensus        88 ~~~i~~   93 (410)
                      ..++++
T Consensus        64 ~~Dl~~   69 (260)
T PRK07063         64 PADVTD   69 (260)
T ss_pred             EccCCC
Confidence            666643

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=94.79  E-value=0.13  Score=53.03  Aligned_cols=36  Identities=25%  Similarity=0.410  Sum_probs=32.2

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      +.+++|+|+|+|.+|..+++.|..+|+ +++++|.|.
T Consensus       210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp  245 (425)
T PRK05476        210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP  245 (425)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence            578899999999999999999999998 699988553

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.79  E-value=0.071  Score=51.96  Aligned_cols=34  Identities=18%  Similarity=0.333  Sum_probs=31.1

Q ss_pred             HHhCCcEEEECCcH-HHHHHHHHHHHhCCCcEEEEe
Q 015243            9 AIKGAKVLMVGAGG-IGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus         9 ~L~~~~VlvvG~Gg-iG~ev~knLa~~Gv~~i~liD   43 (410)
                      .+++++|+|+|+|+ +|..++..|...|. .+++++
T Consensus       156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~  190 (283)
T PRK14192        156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICH  190 (283)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEe
Confidence            36789999999999 99999999999998 899986

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=94.77  E-value=0.14  Score=50.67  Aligned_cols=74  Identities=19%  Similarity=0.244  Sum_probs=50.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCC-cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCC---eEEEE
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM---SITAH   87 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~-~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v---~i~~~   87 (410)
                      ..||.|||+|.+|+.++-.|+..|.. +|.|+|..                   ..|++..+.-+....|..   +|...
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~-------------------~~~~~g~a~Dl~~~~~~~~~~~v~~~   63 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVV-------------------EDKLKGEAMDLQHGSAFLKNPKIEAD   63 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHHHHHhhccCCCCEEEEC
Confidence            46999999999999999999999985 69999832                   234444455555544322   33321


Q ss_pred             ccCCCCCcchHhhhccCcEEEEccC
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                       .       +.+-++++|+||.+..
T Consensus        64 -~-------dy~~~~~adivvitaG   80 (312)
T cd05293          64 -K-------DYSVTANSKVVIVTAG   80 (312)
T ss_pred             -C-------CHHHhCCCCEEEECCC
Confidence             1       1234799999998654

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02602 lactate dehydrogenase

Probab=94.77  E-value=0.11  Score=52.07  Aligned_cols=74  Identities=15%  Similarity=0.255  Sum_probs=50.0

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC-CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC---CCeEEEEc
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP---QMSITAHH   88 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np---~v~i~~~~   88 (410)
                      .||.|||+|.+|+.++-.|+..|+ ++|.|+|-                   ...|++..+.-+....|   .++|... 
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi-------------------~~~~~~g~a~DL~~~~~~~~~~~i~~~-   97 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDV-------------------NPDKLRGEMLDLQHAAAFLPRTKILAS-   97 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC-------------------CCchhhHHHHHHHhhhhcCCCCEEEeC-
Confidence            699999999999999999999998 57999983                   22344444444444332   2333321 


Q ss_pred             cCCCCCcchHhhhccCcEEEEccCC
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLDN  113 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~Dn  113 (410)
                      .       +.+.++++|+||.+...
T Consensus        98 ~-------dy~~~~daDiVVitAG~  115 (350)
T PLN02602         98 T-------DYAVTAGSDLCIVTAGA  115 (350)
T ss_pred             C-------CHHHhCCCCEEEECCCC
Confidence            1       12448999999997543

>PRK05854 short chain dehydrogenase; Provisional

Probab=94.66  E-value=0.15  Score=50.21  Aligned_cols=64  Identities=19%  Similarity=0.379  Sum_probs=43.0

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .|.+++++|.| .||||.++++.|++.|. ++.+++.+.                   .|.+.+.+.+.+.+|+.++..+
T Consensus        11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~-------------------~~~~~~~~~l~~~~~~~~v~~~   70 (313)
T PRK05854         11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNR-------------------AKGEAAVAAIRTAVPDAKLSLR   70 (313)
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHHhCCCCceEEE
Confidence            46778888888 68999999999999996 577765321                   2444444555555555555555


Q ss_pred             ccCCC
Q 015243           88 HANVK   92 (410)
Q Consensus        88 ~~~i~   92 (410)
                      ..++.
T Consensus        71 ~~Dl~   75 (313)
T PRK05854         71 ALDLS   75 (313)
T ss_pred             EecCC
Confidence            55553

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=94.66  E-value=0.13  Score=50.94  Aligned_cols=81  Identities=19%  Similarity=0.199  Sum_probs=54.3

Q ss_pred             HHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEE
Q 015243            6 QLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSIT   85 (410)
Q Consensus         6 ~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~   85 (410)
                      ..+.|++++|.|||.|.+|..++++|..+|+. +++.|..                  +  ++...++   .  ...++.
T Consensus        10 ~~~~LkgKtVGIIG~GsIG~amA~nL~d~G~~-ViV~~r~------------------~--~s~~~A~---~--~G~~v~   63 (335)
T PRK13403         10 NVELLQGKTVAVIGYGSQGHAQAQNLRDSGVE-VVVGVRP------------------G--KSFEVAK---A--DGFEVM   63 (335)
T ss_pred             ChhhhCcCEEEEEeEcHHHHHHHHHHHHCcCE-EEEEECc------------------c--hhhHHHH---H--cCCEEC
Confidence            35789999999999999999999999999984 6665411                  0  1111111   1  122211


Q ss_pred             EEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHH
Q 015243           86 AHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNR  122 (410)
Q Consensus        86 ~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~  122 (410)
                          .      ..+.++.+|+|+.++.+.+.+..++.
T Consensus        64 ----s------l~Eaak~ADVV~llLPd~~t~~V~~~   90 (335)
T PRK13403         64 ----S------VSEAVRTAQVVQMLLPDEQQAHVYKA   90 (335)
T ss_pred             ----C------HHHHHhcCCEEEEeCCChHHHHHHHH
Confidence                1      34778999999998877666665554

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=94.65  E-value=0.2  Score=47.84  Aligned_cols=107  Identities=12%  Similarity=0.078  Sum_probs=67.3

Q ss_pred             HHHhCCcEEEECCcHHHHHHHHHHHHhCCC----------cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh
Q 015243            8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQ----------DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK   77 (410)
Q Consensus         8 ~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~----------~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~   77 (410)
                      ++|.+.||+++|+|+-|.-+++.|...|++          +|.++|..-+=..+-        .+.-..|... +++.+.
T Consensus        21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r--------~~l~~~~~~~-~~~~~~   91 (254)
T cd00762          21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNR--------KETCPNEYHL-ARFANP   91 (254)
T ss_pred             CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCC--------CccCHHHHHH-HHHcCc
Confidence            468899999999999999999999999987          899999765322111        1122222221 122111


Q ss_pred             hCCCCeEEEEccCCCCCcchHhhhc--cCcEEEEccC--ChHHHHHHHHHHHHCCCcEEEecc
Q 015243           78 FRPQMSITAHHANVKDPKFNVEFFK--QFNVVLNGLD--NLDARRHVNRLCLAADVPLVESGT  136 (410)
Q Consensus        78 ~np~v~i~~~~~~i~~~~~~~~~~~--~~DvVi~a~D--n~~~r~~i~~~c~~~~~p~i~~g~  136 (410)
                      ..+          .   ....+-++  +.|++|....  +.-.+..+..++.....|+|.+-+
T Consensus        92 ~~~----------~---~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS  141 (254)
T cd00762          92 ERE----------S---GDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALS  141 (254)
T ss_pred             ccc----------c---CCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECC
Confidence            110          0   11234556  6778777532  334567778888888888887643

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=94.61  E-value=0.06  Score=42.51  Aligned_cols=36  Identities=36%  Similarity=0.573  Sum_probs=33.2

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +..++++|+|+|+.|..++..|...|..++.+.|.|
T Consensus        21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~rd   56 (86)
T cd05191          21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDRD   56 (86)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            678999999999999999999999988899999873

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.59  E-value=0.18  Score=52.59  Aligned_cols=35  Identities=23%  Similarity=0.388  Sum_probs=31.0

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +..++|+|+|+|++|.+++..|...|.. ++++|..
T Consensus        14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~-V~~~d~~   48 (480)
T PRK01438         14 WQGLRVVVAGLGVSGFAAADALLELGAR-VTVVDDG   48 (480)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            4577999999999999999999999975 9998854

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=94.56  E-value=0.42  Score=47.21  Aligned_cols=79  Identities=16%  Similarity=0.256  Sum_probs=49.4

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhC-CCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSG-FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~G-v~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      +++++|+|.| +|++|..+++.|+..| ..+++++|.+.-                   +...+.+.+    +.-+++.+
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~-------------------~~~~~~~~~----~~~~~~~v   58 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDEL-------------------KQWEMQQKF----PAPCLRFF   58 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChh-------------------HHHHHHHHh----CCCcEEEE
Confidence            4568899998 5899999999999987 457888774321                   111111111    11245556


Q ss_pred             ccCCCCCcchHhhhccCcEEEEcc
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGL  111 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~  111 (410)
                      ..++.+...-.+.++++|+||.+.
T Consensus        59 ~~Dl~d~~~l~~~~~~iD~Vih~A   82 (324)
T TIGR03589        59 IGDVRDKERLTRALRGVDYVVHAA   82 (324)
T ss_pred             EccCCCHHHHHHHHhcCCEEEECc
Confidence            666655433345667789888853

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK06197 short chain dehydrogenase; Provisional

Probab=94.54  E-value=0.17  Score=49.27  Aligned_cols=36  Identities=22%  Similarity=0.332  Sum_probs=29.8

Q ss_pred             HHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ..+.+++|+|.| .||||.++++.|+..|. ++.+++.
T Consensus        12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r   48 (306)
T PRK06197         12 PDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVR   48 (306)
T ss_pred             ccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence            356788899998 58999999999999997 5777654

>PRK09242 tropinone reductase; Provisional

Probab=94.51  E-value=0.17  Score=47.65  Aligned_cols=83  Identities=22%  Similarity=0.368  Sum_probs=54.4

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      ++.+++++|.| .|+||.++++.|+..|. ++.+++.+                   ..+.+.+.+.+...+|+.++..+
T Consensus         6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~   65 (257)
T PRK09242          6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARD-------------------ADALAQARDELAEEFPEREVHGL   65 (257)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC-------------------HHHHHHHHHHHHhhCCCCeEEEE
Confidence            36788999998 48999999999999997 47777632                   12344455666666666777777


Q ss_pred             ccCCCCCcchHh-------hhccCcEEEEcc
Q 015243           88 HANVKDPKFNVE-------FFKQFNVVLNGL  111 (410)
Q Consensus        88 ~~~i~~~~~~~~-------~~~~~DvVi~a~  111 (410)
                      ..++.+......       .+.+.|+||.+.
T Consensus        66 ~~Dl~~~~~~~~~~~~~~~~~g~id~li~~a   96 (257)
T PRK09242         66 AADVSDDEDRRAILDWVEDHWDGLHILVNNA   96 (257)
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            666643321111       134567777654

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=94.42  E-value=0.42  Score=50.95  Aligned_cols=83  Identities=14%  Similarity=0.248  Sum_probs=50.1

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC-------CC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR-------PQ   81 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~n-------p~   81 (410)
                      -.++.|+|.| .|+||..+++.|+..|.. +++++.+.                   .|.+.+.+.+.++.       +.
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~-Vval~Rn~-------------------ekl~~l~~~l~~~~L~~~Ga~~~  137 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFR-VRAGVRSA-------------------QRAESLVQSVKQMKLDVEGTQPV  137 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCe-EEEEeCCH-------------------HHHHHHHHHhhhhcccccccccc
Confidence            3456788888 599999999999999964 65554321                   12333333332211       11


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccC
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                      .+++....++.+.......+.++|+||++..
T Consensus       138 ~~v~iV~gDLtD~esI~~aLggiDiVVn~AG  168 (576)
T PLN03209        138 EKLEIVECDLEKPDQIGPALGNASVVICCIG  168 (576)
T ss_pred             CceEEEEecCCCHHHHHHHhcCCCEEEEccc
Confidence            2455666666543333345788999998753

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=94.40  E-value=0.19  Score=51.78  Aligned_cols=108  Identities=22%  Similarity=0.275  Sum_probs=74.6

Q ss_pred             CcEEEECCcHHHH-HHHHHHHH----hCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243           13 AKVLMVGAGGIGC-ELLKTLAL----SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus        13 ~~VlvvG~GgiG~-ev~knLa~----~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .||.|||+|+.-+ ++++.|+.    .++++|.|+|-|.  ...|..-            ...+++.+++..+.++|+..
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~v------------~~~~~~~~~~~~~~~~v~~t   66 (419)
T cd05296           1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEIV------------GALAKRMVKKAGLPIKVHLT   66 (419)
T ss_pred             CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHHH------------HHHHHHHHHhhCCCeEEEEe
Confidence            4799999999765 67777776    5678999999764  3333211            23455666677778888776


Q ss_pred             ccCCCCCcchHhhhccCcEEEEcc--CChHHHHHHHHHHHHCCCcEEEecccCccceE
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGL--DNLDARRHVNRLCLAADVPLVESGTTGFLGQV  143 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~--Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v  143 (410)
                      .+.       .+-++++|+||++.  ...+.|..-.+...++|+-  -..|.|..|..
T Consensus        67 ~d~-------~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~--gqET~G~GG~~  115 (419)
T cd05296          67 TDR-------REALEGADFVFTQIRVGGLEARALDERIPLKHGVI--GQETTGAGGFA  115 (419)
T ss_pred             CCH-------HHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCc--cccCCCcchHH
Confidence            433       35678999999964  4556777777788888774  35667777643

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>PLN02427 UDP-apiose/xylose synthase

Probab=94.37  E-value=0.23  Score=50.16  Aligned_cols=114  Identities=19%  Similarity=0.262  Sum_probs=64.6

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      +++.++|+|.| +|-||+.+++.|+..|--++..+|...-   .+ ++ +..   .+.          ....+  .++.+
T Consensus        11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~---~~-~~-l~~---~~~----------~~~~~--~~~~~   70 (386)
T PLN02427         11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYND---KI-KH-LLE---PDT----------VPWSG--RIQFH   70 (386)
T ss_pred             cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCch---hh-hh-hhc---ccc----------ccCCC--CeEEE
Confidence            56678999998 5999999999999885335777774211   00 00 000   000          00111  35555


Q ss_pred             ccCCCCCcchHhhhccCcEEEEccCC-----------------hHHHHHHHHHHHHCCCcEEEecccCccce
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGLDN-----------------LDARRHVNRLCLAADVPLVESGTTGFLGQ  142 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn-----------------~~~r~~i~~~c~~~~~p~i~~g~~G~~G~  142 (410)
                      ..++.+...-...++++|+||.+..-                 ...-..+-+.|++.++.+|..++.+.+|.
T Consensus        71 ~~Dl~d~~~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~~r~v~~SS~~vYg~  142 (386)
T PLN02427         71 RINIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGK  142 (386)
T ss_pred             EcCCCChHHHHHHhhcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeeCC
Confidence            55665433333456678888874320                 00112234456777788998887766654

>PLN02240 UDP-glucose 4-epimerase

Probab=94.35  E-value=0.4  Score=47.44  Aligned_cols=33  Identities=33%  Similarity=0.691  Sum_probs=28.2

Q ss_pred             HhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEe
Q 015243           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        10 L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      |++++|+|.|+ |.+|..+++.|+..|. +++++|
T Consensus         3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~   36 (352)
T PLN02240          3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVID   36 (352)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEe
Confidence            56789999985 9999999999999985 577776

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=94.34  E-value=0.47  Score=47.09  Aligned_cols=103  Identities=21%  Similarity=0.249  Sum_probs=58.9

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        13 ~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      ++|+|.|+ |-+|+.+++.|...|=-+++.+|...-   ++                       .+..+.-.++.+..++
T Consensus         2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~---~~-----------------------~~~~~~~~~~~~~~Dl   55 (347)
T PRK11908          2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTD---RL-----------------------GDLVNHPRMHFFEGDI   55 (347)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHH---HH-----------------------HHhccCCCeEEEeCCC
Confidence            47999996 999999999998764235777763221   00                       0111111344445555


Q ss_pred             C-CCcchHhhhccCcEEEEccC-----------------ChHHHHHHHHHHHHCCCcEEEecccCccc
Q 015243           92 K-DPKFNVEFFKQFNVVLNGLD-----------------NLDARRHVNRLCLAADVPLVESGTTGFLG  141 (410)
Q Consensus        92 ~-~~~~~~~~~~~~DvVi~a~D-----------------n~~~r~~i~~~c~~~~~p~i~~g~~G~~G  141 (410)
                      . +...-...++++|+||.+..                 |...-..+-+.|++.+..+|..++.+.+|
T Consensus        56 ~~~~~~~~~~~~~~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~SS~~vyg  123 (347)
T PRK11908         56 TINKEWIEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYG  123 (347)
T ss_pred             CCCHHHHHHHHcCCCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEEecceeec
Confidence            3 21122234567788875311                 11222345567777788899887765544

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=94.26  E-value=0.2  Score=49.27  Aligned_cols=72  Identities=17%  Similarity=0.261  Sum_probs=49.9

Q ss_pred             EEEECCcHHHHHHHHHHHHhCC-CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC---CeEEEEccC
Q 015243           15 VLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ---MSITAHHAN   90 (410)
Q Consensus        15 VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~---v~i~~~~~~   90 (410)
                      |.|||+|.+|+.++-.|+..|+ .+|+|+|.+                   +.|++..+.-|....+.   .++..    
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~-------------------~~~~~g~~~DL~~~~~~~~~~~i~~----   57 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVN-------------------EEKAKGDALDLSHASAFLATGTIVR----   57 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHhHHHhccccCCCeEEE----
Confidence            5799999999999999999997 569999832                   24555555666665543   22221    


Q ss_pred             CCCCcchHhhhccCcEEEEccCC
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLDN  113 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~Dn  113 (410)
                       ..   +.+-++++|+||.+...
T Consensus        58 -~~---~~~~l~~aDiVIitag~   76 (300)
T cd00300          58 -GG---DYADAADADIVVITAGA   76 (300)
T ss_pred             -CC---CHHHhCCCCEEEEcCCC
Confidence             11   12457899999998654

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK08618 ornithine cyclodeaminase; Validated

Probab=94.26  E-value=0.22  Score=49.40  Aligned_cols=77  Identities=10%  Similarity=0.169  Sum_probs=54.0

Q ss_pred             hCCcEEEECCcHHHHHHHHHHH-HhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           11 KGAKVLMVGAGGIGCELLKTLA-LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa-~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      ..++++|+|+|+.|-..+..+. ..|+.++.++|.+                   ..|++.+++.+++.. .+++..+. 
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~~~~~~~~~-~~~~~~~~-  184 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT-------------------FEKAYAFAQEIQSKF-NTEIYVVN-  184 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhc-CCcEEEeC-
Confidence            4678999999999999988875 5689999998632                   346666777665432 23433321 


Q ss_pred             CCCCCcchHhhhccCcEEEEccCCh
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLDNL  114 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~Dn~  114 (410)
                      +      ..+.+.++|+|++|+.+.
T Consensus       185 ~------~~~~~~~aDiVi~aT~s~  203 (325)
T PRK08618        185 S------ADEAIEEADIIVTVTNAK  203 (325)
T ss_pred             C------HHHHHhcCCEEEEccCCC
Confidence            1      235568999999999764

>PRK08251 short chain dehydrogenase; Provisional

Probab=94.25  E-value=0.3  Score=45.58  Aligned_cols=62  Identities=21%  Similarity=0.426  Sum_probs=43.9

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      +++++|.| .||+|.++++.|+..|. ++.+++.+.                   .+.+.+.+.+.+.+|..++..+..+
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~D   61 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRT-------------------DRLEELKAELLARYPGIKVAVAALD   61 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEEcC
Confidence            56788887 89999999999999995 677776431                   2334445555566677777777666


Q ss_pred             CCC
Q 015243           91 VKD   93 (410)
Q Consensus        91 i~~   93 (410)
                      +++
T Consensus        62 ~~~   64 (248)
T PRK08251         62 VND   64 (248)
T ss_pred             CCC
Confidence            654

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=94.19  E-value=0.26  Score=48.65  Aligned_cols=87  Identities=24%  Similarity=0.330  Sum_probs=53.7

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC--
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN--   90 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~--   90 (410)
                      +||+|+|+|++||.++-.|++.| ..++++-               |      ++.   .+++++-  .+.+......  
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~---------------R------~~~---~~~l~~~--GL~i~~~~~~~~   53 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAG-HDVTLLV---------------R------SRR---LEALKKK--GLRIEDEGGNFT   53 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCC-CeEEEEe---------------c------HHH---HHHHHhC--CeEEecCCCccc
Confidence            48999999999999999999999 7666642               1      111   2223222  3444443331  


Q ss_pred             C-CCCcchHhhhccCcEEEEccCChHHHHHHHHHHHH
Q 015243           91 V-KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA  126 (410)
Q Consensus        91 i-~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~  126 (410)
                      . .......+....+|+||.++-+......+..+...
T Consensus        54 ~~~~~~~~~~~~~~~Dlviv~vKa~q~~~al~~l~~~   90 (307)
T COG1893          54 TPVVAATDAEALGPADLVIVTVKAYQLEEALPSLAPL   90 (307)
T ss_pred             cccccccChhhcCCCCEEEEEeccccHHHHHHHhhhc
Confidence            1 11112234566899999998776666665555443

>PRK06141 ornithine cyclodeaminase; Validated

Probab=94.18  E-value=0.17  Score=50.09  Aligned_cols=77  Identities=12%  Similarity=0.106  Sum_probs=54.1

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHH-hCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLAL-SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~-~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      +...++|+|+|+|+.|..+++.+.+ .|+.++++.+.                   ...|++.+++.+.+..  ..+...
T Consensus       122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~R-------------------s~~~a~~~a~~~~~~g--~~~~~~  180 (314)
T PRK06141        122 RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGR-------------------DPAKAEALAAELRAQG--FDAEVV  180 (314)
T ss_pred             CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcC-------------------CHHHHHHHHHHHHhcC--CceEEe
Confidence            3456899999999999999997775 67888998752                   2457777777776542  223221


Q ss_pred             ccCCCCCcchHhhhccCcEEEEccCC
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGLDN  113 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn  113 (410)
                          .   ...+.+.++|+|++|+.+
T Consensus       181 ----~---~~~~av~~aDIVi~aT~s  199 (314)
T PRK06141        181 ----T---DLEAAVRQADIISCATLS  199 (314)
T ss_pred             ----C---CHHHHHhcCCEEEEeeCC
Confidence                1   123567899999999874

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=94.09  E-value=0.52  Score=45.19  Aligned_cols=92  Identities=22%  Similarity=0.287  Sum_probs=58.3

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHh-CCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           13 AKVLMVGA-GGIGCELLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        13 ~~VlvvG~-GgiG~ev~knLa~~-Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      .||.|+|+ |.+|..+++.+... ++.-..++|.+.-   ...+   +                     ....+..    
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~---~~~~---~---------------------~~~~i~~----   50 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGS---PLVG---Q---------------------GALGVAI----   50 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc---cccc---c---------------------CCCCccc----
Confidence            48999999 99999999988764 4554555664421   1100   0                     0011110    


Q ss_pred             CCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCcc
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFL  140 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~  140 (410)
                       . .. ..+.+..+|+|++++ .+..-..+...|.++++|++-+ +.|+.
T Consensus        51 -~-~d-l~~ll~~~DvVid~t-~p~~~~~~~~~al~~G~~vvig-ttG~s   95 (257)
T PRK00048         51 -T-DD-LEAVLADADVLIDFT-TPEATLENLEFALEHGKPLVIG-TTGFT   95 (257)
T ss_pred             -c-CC-HHHhccCCCEEEECC-CHHHHHHHHHHHHHcCCCEEEE-CCCCC
Confidence             0 11 123456799999987 4556677888999999999954 66654

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=94.08  E-value=0.51  Score=41.93  Aligned_cols=94  Identities=26%  Similarity=0.359  Sum_probs=59.5

Q ss_pred             EEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCCC
Q 015243           15 VLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD   93 (410)
Q Consensus        15 VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~   93 (410)
                      |+|+|+ |.+|..+++.|...| .+++.+=          |.         ..|.+.        .+  +++....++.+
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~----------R~---------~~~~~~--------~~--~~~~~~~d~~d   50 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRG-HEVTALV----------RS---------PSKAED--------SP--GVEIIQGDLFD   50 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTT-SEEEEEE----------SS---------GGGHHH--------CT--TEEEEESCTTC
T ss_pred             eEEECCCChHHHHHHHHHHHCC-CEEEEEe----------cC---------chhccc--------cc--ccccceeeehh
Confidence            789997 999999999999999 4566531          11         112222        34  45556666654


Q ss_pred             CcchHhhhccCcEEEEccCC----hHHHHHHHHHHHHCCCcEE-EecccC
Q 015243           94 PKFNVEFFKQFNVVLNGLDN----LDARRHVNRLCLAADVPLV-ESGTTG  138 (410)
Q Consensus        94 ~~~~~~~~~~~DvVi~a~Dn----~~~r~~i~~~c~~~~~p~i-~~g~~G  138 (410)
                      ...-...++++|.||.+...    ...-..+-+.|.+.+++-+ ..++.|
T Consensus        51 ~~~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~~  100 (183)
T PF13460_consen   51 PDSVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSAG  100 (183)
T ss_dssp             HHHHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred             hhhhhhhhhhcchhhhhhhhhcccccccccccccccccccccceeeeccc
Confidence            43334567899999998742    3334456667777777533 334333

...

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=94.05  E-value=0.25  Score=45.94  Aligned_cols=36  Identities=31%  Similarity=0.558  Sum_probs=30.0

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .+++++|+|.| .|++|..+++.|+..|. ++++++.+
T Consensus         3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~   39 (251)
T PRK12826          3 DLEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDIC   39 (251)
T ss_pred             CCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence            35678999998 79999999999999997 57777644

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.03  E-value=0.61  Score=45.84  Aligned_cols=33  Identities=30%  Similarity=0.506  Sum_probs=29.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      ++|.|||+|.+|+.++.+|+..|. +++++|.+.
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~   35 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP   35 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence            379999999999999999999997 599998664

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=94.01  E-value=0.43  Score=45.78  Aligned_cols=74  Identities=15%  Similarity=0.156  Sum_probs=49.2

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCC---CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv---~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      ++.+|.++|+|.+|+.+++.|...|.   .++.+.|.+.-.              .+                   +...
T Consensus         2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~--------------~~-------------------~~~~   48 (260)
T PTZ00431          2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN--------------TP-------------------FVYL   48 (260)
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc--------------CC-------------------eEEe
Confidence            45789999999999999999999884   236665532200              00                   0111


Q ss_pred             ccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHH
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC  124 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c  124 (410)
                          .   .+.+..+++|+||.|+.....+..+.++.
T Consensus        49 ----~---~~~~~~~~~D~Vilavkp~~~~~vl~~i~   78 (260)
T PTZ00431         49 ----Q---SNEELAKTCDIIVLAVKPDLAGKVLLEIK   78 (260)
T ss_pred             ----C---ChHHHHHhCCEEEEEeCHHHHHHHHHHHH
Confidence                1   12344678899999987766776666654

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.00  E-value=0.34  Score=45.67  Aligned_cols=82  Identities=12%  Similarity=0.248  Sum_probs=49.2

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCC---CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv---~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      ...||.|||+|.+|..+++.|...|.   ..+.+++..                  ...|++.+++   +.  .+.+  .
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~------------------~~~~~~~~~~---~~--~~~~--~   57 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS------------------NVEKLDQLQA---RY--NVST--T   57 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC------------------CHHHHHHHHH---Hc--CcEE--e
Confidence            35789999999999999999998873   223333210                  0122222222   22  1221  1


Q ss_pred             ccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHH
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC  124 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c  124 (410)
                       .+      ..+.++++|+|+.|+.....+..+.++.
T Consensus        58 -~~------~~~~~~~~DiViiavp~~~~~~v~~~l~   87 (245)
T PRK07634         58 -TD------WKQHVTSVDTIVLAMPPSAHEELLAELS   87 (245)
T ss_pred             -CC------hHHHHhcCCEEEEecCHHHHHHHHHHHH
Confidence             11      2345688999999998766666555543

>PRK07831 short chain dehydrogenase; Provisional

Probab=93.97  E-value=0.28  Score=46.38  Aligned_cols=34  Identities=32%  Similarity=0.494  Sum_probs=28.5

Q ss_pred             HHhCCcEEEECC-c-HHHHHHHHHHHHhCCCcEEEEe
Q 015243            9 AIKGAKVLMVGA-G-GIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus         9 ~L~~~~VlvvG~-G-giG~ev~knLa~~Gv~~i~liD   43 (410)
                      .+.+++++|.|+ | |||..+++.|+..|.. +.++|
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~   49 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISD   49 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEe
Confidence            355789999996 6 7999999999999975 77765

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=93.97  E-value=0.48  Score=45.64  Aligned_cols=32  Identities=25%  Similarity=0.451  Sum_probs=28.8

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      .+++++|+|+||+|..++..|+..|. +++++|
T Consensus       116 ~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~  147 (270)
T TIGR00507       116 PNQRVLIIGAGGAARAVALPLLKADC-NVIIAN  147 (270)
T ss_pred             cCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEe
Confidence            46789999999999999999999996 788876

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=93.96  E-value=0.15  Score=50.00  Aligned_cols=117  Identities=20%  Similarity=0.308  Sum_probs=66.2

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhh-CCCCeEEEEccC-C
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKF-RPQMSITAHHAN-V   91 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~-np~v~i~~~~~~-i   91 (410)
                      +|.+||+|.+|..++++|+..|.. +++.|.+.-....+.        +.|-.-+....+.+... ++++-+...... .
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~~-v~v~dr~~~~~~~~~--------~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~   72 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGHE-VVGYDRNPEAVEALA--------EEGATGADSLEELVAKLPAPRVVWLMVPAGEI   72 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCe-EEEEECCHHHHHHHH--------HCCCeecCCHHHHHhhcCCCCEEEEEecCCcH
Confidence            799999999999999999999964 888886532211110        01211111222333322 345544444332 1


Q ss_pred             CCCcch--HhhhccCcEEEEcc-CChHHHHHHHHHHHHCCCcEEEecccCc
Q 015243           92 KDPKFN--VEFFKQFNVVLNGL-DNLDARRHVNRLCLAADVPLVESGTTGF  139 (410)
Q Consensus        92 ~~~~~~--~~~~~~~DvVi~a~-Dn~~~r~~i~~~c~~~~~p~i~~g~~G~  139 (410)
                      .+....  ...++.-++||++. -++.....+.+.+...++.++++.+.|.
T Consensus        73 ~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~  123 (301)
T PRK09599         73 TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGG  123 (301)
T ss_pred             HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcC
Confidence            111110  11234446788763 3444555567788888888998877764

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=93.94  E-value=0.23  Score=48.12  Aligned_cols=92  Identities=14%  Similarity=0.227  Sum_probs=55.4

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCC---CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv---~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      ...+|.+||+|.+|..+++.|...|+   .++++.|          |..        ..+++.+++   +.  .+++.  
T Consensus         2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~----------r~~--------~~~~~~l~~---~~--g~~~~--   56 (279)
T PRK07679          2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSN----------RSN--------ETRLQELHQ---KY--GVKGT--   56 (279)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEEC----------CCC--------HHHHHHHHH---hc--CceEe--
Confidence            45689999999999999999999983   2333332          110        112222222   11  23221  


Q ss_pred             ccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHH--CCCcEEEe
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA--ADVPLVES  134 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~--~~~p~i~~  134 (410)
                      .       ...+..+++|+||.|+-.......+..+...  .+..+|+.
T Consensus        57 ~-------~~~e~~~~aDvVilav~p~~~~~vl~~l~~~~~~~~liIs~   98 (279)
T PRK07679         57 H-------NKKELLTDANILFLAMKPKDVAEALIPFKEYIHNNQLIISL   98 (279)
T ss_pred             C-------CHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEE
Confidence            1       1234567899999999887777777666532  34456653

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=93.90  E-value=0.54  Score=45.63  Aligned_cols=32  Identities=31%  Similarity=0.541  Sum_probs=28.1

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .+|+|+|+|++|+.++..|+..|. +++++|.+
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~   32 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGH-DVTLVARR   32 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            379999999999999999999984 68998853

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=93.90  E-value=0.68  Score=44.79  Aligned_cols=80  Identities=18%  Similarity=0.308  Sum_probs=50.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCC---CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv---~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      +.+|.+||+|-+|..+++.|...|.   .+|.+.|.+                   ..+++.+++   +.  .+++  ..
T Consensus         2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~-------------------~~~~~~l~~---~~--g~~~--~~   55 (272)
T PRK12491          2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLN-------------------VSNLKNASD---KY--GITI--TT   55 (272)
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCC-------------------HHHHHHHHH---hc--CcEE--eC
Confidence            5689999999999999999999885   246655421                   122222222   12  2222  11


Q ss_pred             cCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHH
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC  124 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c  124 (410)
                          +   ..+..+++|+||.|+-....+..+.++.
T Consensus        56 ----~---~~e~~~~aDiIiLavkP~~~~~vl~~l~   84 (272)
T PRK12491         56 ----N---NNEVANSADILILSIKPDLYSSVINQIK   84 (272)
T ss_pred             ----C---cHHHHhhCCEEEEEeChHHHHHHHHHHH
Confidence                1   2245678999999997655666565554

>PRK14982 acyl-ACP reductase; Provisional

Probab=93.85  E-value=0.3  Score=48.83  Aligned_cols=36  Identities=28%  Similarity=0.511  Sum_probs=31.6

Q ss_pred             HHhCCcEEEECC-cHHHHHHHHHHHH-hCCCcEEEEeC
Q 015243            9 AIKGAKVLMVGA-GGIGCELLKTLAL-SGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG~-GgiG~ev~knLa~-~Gv~~i~liD~   44 (410)
                      .|.+++|+|+|+ |.+|+++++.|+. .|+.++++++.
T Consensus       152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R  189 (340)
T PRK14982        152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVAR  189 (340)
T ss_pred             CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcC
Confidence            477899999998 8999999999985 58999999864

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=93.82  E-value=0.17  Score=55.65  Aligned_cols=163  Identities=13%  Similarity=0.144  Sum_probs=86.9

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCccc----CccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSN----LNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sN----L~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      ++|.|||+|.+|+.++..++..|.. ++|+|.+.-....    +.+. |=+.-.-|+...+...+.+.+      |+.. 
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~~~~~l~~~~~~~~~~-l~~~~~~g~~~~~~~~~~~~~------i~~~-  384 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVP-VIMKDINQKALDLGMTEAAKL-LNKQVERGKIDGAKMAGVLSS------IRPT-  384 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCe-EEEEeCCHHHHHHHHHHHHHH-HHHHHHcCCCChhhHHHHHhC------eEEe-
Confidence            5799999999999999999999975 9999955322111    0000 000001122111112222221      1111 


Q ss_pred             cCCCCCcchHhhhccCcEEEEcc-CChHHHHHHHHHHHHCCC--cEEEecccCcc-ceEEEEeCCCCccccccCCCCCCC
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGFL-GQVTVHVKGKTECYECQPKPAPKT  164 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~-Dn~~~r~~i~~~c~~~~~--p~i~~g~~G~~-G~v~~~~~~~t~c~~C~~~~~~~~  164 (410)
                           ..+  +-++++|+||.|+ .+.+.+..+-+.....-.  .++.+.|.++. ..+.-......-+...++-.++..
T Consensus       385 -----~~~--~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~  457 (715)
T PRK11730        385 -----LDY--AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHR  457 (715)
T ss_pred             -----CCH--HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccc
Confidence                 111  2358999999985 667777666555544322  35555544432 001001111122333333344455


Q ss_pred             CCceeeccCCCcchHHHHHHHHHHHHHH
Q 015243          165 YPVCTITSTPSKFVHCIVWAKDLLFAKL  192 (410)
Q Consensus       165 ~p~cti~~~p~~~~h~i~~a~~~~f~~~  192 (410)
                      .|...|...+.+....+..+.+ +...+
T Consensus       458 ~~lVEvv~g~~T~~~~~~~~~~-~~~~l  484 (715)
T PRK11730        458 MPLVEVIRGEKTSDETIATVVA-YASKM  484 (715)
T ss_pred             cceEEeeCCCCCCHHHHHHHHH-HHHHh
Confidence            6777787777777888888887 34433

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=93.80  E-value=0.63  Score=38.27  Aligned_cols=91  Identities=19%  Similarity=0.226  Sum_probs=58.5

Q ss_pred             EEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCCCC
Q 015243           15 VLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDP   94 (410)
Q Consensus        15 VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~   94 (410)
                      |+|+|+|.+|-++++.|...| -.++++|.|.-.                       .+.+++..    +..+.++.++.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~~~-----------------------~~~~~~~~----~~~i~gd~~~~   52 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDPER-----------------------VEELREEG----VEVIYGDATDP   52 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTT-SEEEEEESSHHH-----------------------HHHHHHTT----SEEEES-TTSH
T ss_pred             eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCcHH-----------------------HHHHHhcc----cccccccchhh
Confidence            689999999999999999944 679999965421                       12222221    23444555432


Q ss_pred             -cchHhhhccCcEEEEccCChHHHHHHHHHHHH-CCCcEEE
Q 015243           95 -KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA-ADVPLVE  133 (410)
Q Consensus        95 -~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~-~~~p~i~  133 (410)
                       .+...-+++++.|+.++++......+...+++ ++.+-+-
T Consensus        53 ~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii   93 (116)
T PF02254_consen   53 EVLERAGIEKADAVVILTDDDEENLLIALLARELNPDIRII   93 (116)
T ss_dssp             HHHHHTTGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEE
T ss_pred             hHHhhcCccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEE
Confidence             12223467899999999988887777777776 4434333

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=93.77  E-value=0.16  Score=55.82  Aligned_cols=160  Identities=15%  Similarity=0.213  Sum_probs=88.5

Q ss_pred             CcEEEECCcHHHHHHHHHHH-HhCCCcEEEEeCCccCcccCcccc--C---C-CCCCCCchHHHHHHHHHHhhCCCCeEE
Q 015243           13 AKVLMVGAGGIGCELLKTLA-LSGFQDIHIIDMDTIEVSNLNRQF--L---F-RQSHVGQSKAKVARDAVLKFRPQMSIT   85 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa-~~Gv~~i~liD~D~Ve~sNL~Rq~--l---f-~~~diG~~Ka~~a~~~l~~~np~v~i~   85 (410)
                      ++|.|||+|.+|+.++-.++ ..|+. ++++|.+.   ..+.|-.  +   + ..-.-|+-..+...+.+.      +|+
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~-V~l~d~~~---~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~i~  379 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLP-VRIKDINP---QGINHALKYSWDLLDKKVKRRHLKPSERDKQMA------LIS  379 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCe-EEEEeCCH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHh------cEE
Confidence            67999999999999999999 88965 88998653   2121110  0   0 000001111111111111      121


Q ss_pred             EEccCCCCCcchHhhhccCcEEEEcc-CChHHHHHHHHHHHHCCC--cEEEecccCccc-eEEEEeCCCCccccccCCCC
Q 015243           86 AHHANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGFLG-QVTVHVKGKTECYECQPKPA  161 (410)
Q Consensus        86 ~~~~~i~~~~~~~~~~~~~DvVi~a~-Dn~~~r~~i~~~c~~~~~--p~i~~g~~G~~G-~v~~~~~~~t~c~~C~~~~~  161 (410)
                      ..     . .+  +-++++|+||.|+ .+.+.+..+-....+.-.  .++.+.|.+..- .+.-......-+...++-.+
T Consensus       380 ~~-----~-~~--~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P  451 (708)
T PRK11154        380 GT-----T-DY--RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSP  451 (708)
T ss_pred             Ee-----C-Ch--HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCc
Confidence            11     1 11  3358999999985 667777766665555433  455555554321 11001112222344444445


Q ss_pred             CCCCCceeeccCCCcchHHHHHHHHHHHHH
Q 015243          162 PKTYPVCTITSTPSKFVHCIVWAKDLLFAK  191 (410)
Q Consensus       162 ~~~~p~cti~~~p~~~~h~i~~a~~~~f~~  191 (410)
                      +...|.+.|...|.+....+..+.+ +...
T Consensus       452 ~~~~~lVEvv~g~~Ts~~~~~~~~~-~~~~  480 (708)
T PRK11154        452 VEKMPLVEVIPHAKTSAETIATTVA-LAKK  480 (708)
T ss_pred             cccCceEEEECCCCCCHHHHHHHHH-HHHH
Confidence            5667888998888888888888887 3443

>PRK05875 short chain dehydrogenase; Provisional

Probab=93.76  E-value=0.36  Score=46.00  Aligned_cols=35  Identities=23%  Similarity=0.413  Sum_probs=29.8

Q ss_pred             HHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .+++++++|.|+ |++|.++++.|+..|. ++.+++.
T Consensus         4 ~~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r   39 (276)
T PRK05875          4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGR   39 (276)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeC
Confidence            367899999995 8999999999999998 5777763

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=93.72  E-value=0.33  Score=45.66  Aligned_cols=35  Identities=29%  Similarity=0.529  Sum_probs=29.6

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .+.+++|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r   42 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGR   42 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeC
Confidence            36789999998 59999999999999997 4777764

>PRK07062 short chain dehydrogenase; Provisional

Probab=93.71  E-value=0.3  Score=46.24  Aligned_cols=82  Identities=20%  Similarity=0.280  Sum_probs=52.6

Q ss_pred             HhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      ++++.++|.|+ ||||.++++.|+..|.. +.+++.+.                   .+.+.+.+.+.+..|..++..+.
T Consensus         6 l~~k~~lItGas~giG~~ia~~l~~~G~~-V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~   65 (265)
T PRK07062          6 LEGRVAVVTGGSSGIGLATVELLLEAGAS-VAICGRDE-------------------ERLASAEARLREKFPGARLLAAR   65 (265)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEE
Confidence            66788999985 79999999999999975 77766431                   23444555566666666666666


Q ss_pred             cCCCCCcchHh-------hhccCcEEEEcc
Q 015243           89 ANVKDPKFNVE-------FFKQFNVVLNGL  111 (410)
Q Consensus        89 ~~i~~~~~~~~-------~~~~~DvVi~a~  111 (410)
                      .++++..-...       -+...|++|++.
T Consensus        66 ~D~~~~~~v~~~~~~~~~~~g~id~li~~A   95 (265)
T PRK07062         66 CDVLDEADVAAFAAAVEARFGGVDMLVNNA   95 (265)
T ss_pred             ecCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            66643211111       134567776643

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=93.69  E-value=0.44  Score=49.17  Aligned_cols=94  Identities=20%  Similarity=0.274  Sum_probs=60.3

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      ...+|+|+|+|.+|..+++.|...|.. ++++|.|.=                   +.+    .+++..+++.  ...++
T Consensus       230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~-v~vid~~~~-------------------~~~----~~~~~~~~~~--~i~gd  283 (453)
T PRK09496        230 PVKRVMIVGGGNIGYYLAKLLEKEGYS-VKLIERDPE-------------------RAE----ELAEELPNTL--VLHGD  283 (453)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCe-EEEEECCHH-------------------HHH----HHHHHCCCCe--EEECC
Confidence            468899999999999999999998875 788874421                   111    1222222332  23334


Q ss_pred             CCCC-cchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCc
Q 015243           91 VKDP-KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVP  130 (410)
Q Consensus        91 i~~~-~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p  130 (410)
                      .++. .+...-++++|.|+.++++......+...|+..+.+
T Consensus       284 ~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~  324 (453)
T PRK09496        284 GTDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAK  324 (453)
T ss_pred             CCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCC
Confidence            3322 122234578999999988777666666677776554

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=93.68  E-value=0.35  Score=47.47  Aligned_cols=33  Identities=27%  Similarity=0.387  Sum_probs=28.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCC-CcEEEEeC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDM   44 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~   44 (410)
                      ..+|.|||+|.+|..+++.|...|. .+++++|.
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr   39 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADR   39 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            4689999999999999999999997 46888874

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=93.65  E-value=0.4  Score=49.69  Aligned_cols=108  Identities=18%  Similarity=0.243  Sum_probs=74.2

Q ss_pred             CcEEEECCcHH-HHHHHHHHHH----hCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243           13 AKVLMVGAGGI-GCELLKTLAL----SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus        13 ~~VlvvG~Ggi-G~ev~knLa~----~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .||.+||+|+. +-++++.|+.    .++++|.|+|-|.   ..|.+            =...+++.+++..+.++|+..
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~---~rl~~------------v~~l~~~~~~~~g~~~~v~~T   65 (437)
T cd05298           1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDA---ERQEK------------VAEAVKILFKENYPEIKFVYT   65 (437)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCH---HHHHH------------HHHHHHHHHHhhCCCeEEEEE
Confidence            47999999986 2366677764    4568999999554   22211            122345555666778888877


Q ss_pred             ccCCCCCcchHhhhccCcEEEEc--cCChHHHHHHHHHHHHCCCcEEEecccCccceEE
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNG--LDNLDARRHVNRLCLAADVPLVESGTTGFLGQVT  144 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a--~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~  144 (410)
                      .++       .+-++++|+||++  ....++|..--+...++|+  +-..|.|..|...
T Consensus        66 tdr-------~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi--~gqET~G~GG~~~  115 (437)
T cd05298          66 TDP-------EEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGV--VGQETCGPGGFAY  115 (437)
T ss_pred             CCH-------HHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCc--ceecCccHHHHHH
Confidence            543       3557899999996  4667888888889999996  5456777777443

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PRK08655 prephenate dehydrogenase; Provisional

Probab=93.62  E-value=0.29  Score=50.67  Aligned_cols=90  Identities=17%  Similarity=0.279  Sum_probs=54.4

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      ++|+|+| +|++|..+++.|...|. +++++|.+.                   .++...+   .+.  ++.+       
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~~-------------------~~~~~~a---~~~--gv~~-------   48 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGF-EVIVTGRDP-------------------KKGKEVA---KEL--GVEY-------   48 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCC-EEEEEECCh-------------------HHHHHHH---HHc--CCee-------
Confidence            3799997 89999999999999996 577777431                   1111111   111  1111       


Q ss_pred             CCCcchHhhhccCcEEEEccCChHHHHHHHHHHHH--CCCcEEEecc
Q 015243           92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA--ADVPLVESGT  136 (410)
Q Consensus        92 ~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~--~~~p~i~~g~  136 (410)
                      ..  ...+.+.++|+||.|+........+.+....  .+..+++.++
T Consensus        49 ~~--~~~e~~~~aDvVIlavp~~~~~~vl~~l~~~l~~~~iViDvsS   93 (437)
T PRK08655         49 AN--DNIDAAKDADIVIISVPINVTEDVIKEVAPHVKEGSLLMDVTS   93 (437)
T ss_pred             cc--CHHHHhccCCEEEEecCHHHHHHHHHHHHhhCCCCCEEEEccc
Confidence            00  1234567889999998655555555555432  3455777665

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=93.62  E-value=0.55  Score=45.48  Aligned_cols=31  Identities=29%  Similarity=0.275  Sum_probs=27.4

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +|.|||+|.+|..+++.|...|. +++++|.+
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~   32 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRR   32 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCC-EEEEEECC
Confidence            79999999999999999999986 58888753

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=93.61  E-value=0.1  Score=47.04  Aligned_cols=37  Identities=24%  Similarity=0.407  Sum_probs=31.2

Q ss_pred             HHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         8 ~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ..|.+++|.|+|+|.||.++++.|...|+ ++..+|..
T Consensus        32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~   68 (178)
T PF02826_consen   32 RELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRS   68 (178)
T ss_dssp             S-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESS
T ss_pred             cccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEeccc
Confidence            36789999999999999999999999998 68888743

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK07576 short chain dehydrogenase; Provisional

Probab=93.61  E-value=0.2  Score=47.68  Aligned_cols=38  Identities=21%  Similarity=0.427  Sum_probs=31.6

Q ss_pred             HHHHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            7 LEAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         7 q~~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ..++.+++++|.|+ |+||.++++.|+..|.. +.++|.+
T Consensus         4 ~~~~~~k~ilItGasggIG~~la~~l~~~G~~-V~~~~r~   42 (264)
T PRK07576          4 MFDFAGKNVVVVGGTSGINLGIAQAFARAGAN-VAVASRS   42 (264)
T ss_pred             cccCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence            34678899999985 89999999999999865 7777743

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=93.59  E-value=0.32  Score=48.34  Aligned_cols=75  Identities=15%  Similarity=0.174  Sum_probs=53.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHH-HhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           12 GAKVLMVGAGGIGCELLKTLA-LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa-~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      .++++|+|+|+.|-..++.|. ..|+.+++|.+.                   ...|++.+++.+.+..+ +++... .+
T Consensus       129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R-------------------~~~~a~~~a~~~~~~~g-~~v~~~-~~  187 (326)
T TIGR02992       129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWAR-------------------DSAKAEALALQLSSLLG-IDVTAA-TD  187 (326)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECC-------------------CHHHHHHHHHHHHhhcC-ceEEEe-CC
Confidence            468999999999999999997 578889999752                   23477777777764332 344332 11


Q ss_pred             CCCCcchHhhhccCcEEEEccCC
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLDN  113 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~Dn  113 (410)
                            ..+.+.++|+|++|+.+
T Consensus       188 ------~~~av~~aDiVvtaT~s  204 (326)
T TIGR02992       188 ------PRAAMSGADIIVTTTPS  204 (326)
T ss_pred             ------HHHHhccCCEEEEecCC
Confidence                  23556899999999865

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PLN02688 pyrroline-5-carboxylate reductase

Probab=93.59  E-value=0.53  Score=45.02  Aligned_cols=79  Identities=20%  Similarity=0.296  Sum_probs=48.2

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC---CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv---~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      .+|.+||+|.+|..++++|...|.   ..+++.+         +|         ...|.+.    +.+.  .+.+..   
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~---------~r---------~~~~~~~----~~~~--g~~~~~---   53 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTAD---------DS---------NPARRDV----FQSL--GVKTAA---   53 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEe---------CC---------CHHHHHH----HHHc--CCEEeC---
Confidence            479999999999999999999985   2455541         01         1123222    2222  233211   


Q ss_pred             CCCCCcchHhhhccCcEEEEccCChHHHHHHHHHH
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC  124 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c  124 (410)
                            ...+..+++|+||.|+.....+..+..+.
T Consensus        54 ------~~~e~~~~aDvVil~v~~~~~~~vl~~l~   82 (266)
T PLN02688         54 ------SNTEVVKSSDVIILAVKPQVVKDVLTELR   82 (266)
T ss_pred             ------ChHHHHhcCCEEEEEECcHHHHHHHHHHH
Confidence                  12244678999999997655566655543

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.54  E-value=0.55  Score=48.86  Aligned_cols=41  Identities=29%  Similarity=0.319  Sum_probs=34.4

Q ss_pred             HHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243            5 RQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus         5 e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      |.-.-+.+++|+|+|.|..|..+++.|...|. .+++.|.+.
T Consensus         7 ~~~~~~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~   47 (458)
T PRK01710          7 EFKKFIKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKS   47 (458)
T ss_pred             HHhhhhcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCC
Confidence            44456778999999999999999999999997 588888543

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=93.54  E-value=0.31  Score=52.86  Aligned_cols=88  Identities=17%  Similarity=0.262  Sum_probs=62.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      +.+|+|+|+|.+|..+++.|...|+. ++++|.|.-                   +++.+    ++.  +  ...+.++.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~~-------------------~v~~~----~~~--g--~~v~~GDa  451 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVK-MTVLDHDPD-------------------HIETL----RKF--G--MKVFYGDA  451 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCC-EEEEECCHH-------------------HHHHH----Hhc--C--CeEEEEeC
Confidence            47899999999999999999999985 889897652                   22222    221  2  23455555


Q ss_pred             CCCcc-hHhhhccCcEEEEccCChHHHHHHHHHHHHC
Q 015243           92 KDPKF-NVEFFKQFNVVLNGLDNLDARRHVNRLCLAA  127 (410)
Q Consensus        92 ~~~~~-~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~  127 (410)
                      ++... ...-++++|+||.++||.+....+-..+++.
T Consensus       452 t~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~  488 (621)
T PRK03562        452 TRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEH  488 (621)
T ss_pred             CCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHh
Confidence            43321 1223568999999999998888888888775

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=93.52  E-value=0.26  Score=48.36  Aligned_cols=32  Identities=31%  Similarity=0.499  Sum_probs=28.2

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .+|.|+|+|.+|+.++..|+..|.. ++++|.+
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~-V~~~~r~   33 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHD-VTLWARD   33 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCE-EEEEECC
Confidence            4799999999999999999999875 7888754

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=93.50  E-value=0.47  Score=47.28  Aligned_cols=117  Identities=17%  Similarity=0.163  Sum_probs=64.6

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      +++.++|+|.| +|=+|+.+++.|...|. +++.+|...-...+....+               ...... .+.-++..+
T Consensus        12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~~~~~~~~~~~~---------------~~~~~~-~~~~~~~~~   74 (348)
T PRK15181         12 VLAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNFSTGYQHNLDDV---------------RTSVSE-EQWSRFIFI   74 (348)
T ss_pred             cccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCCCcchhhhhhh---------------hhcccc-ccCCceEEE
Confidence            45669999998 59999999999999985 5777775321111000000               000000 000134445


Q ss_pred             ccCCCCCcchHhhhccCcEEEEccC-----------------ChHHHHHHHHHHHHCCC-cEEEecccCccce
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGLD-----------------NLDARRHVNRLCLAADV-PLVESGTTGFLGQ  142 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~D-----------------n~~~r~~i~~~c~~~~~-p~i~~g~~G~~G~  142 (410)
                      ..++.+...-...++++|+||.+..                 |...-..+-+.|++.++ .++..++.+.+|.
T Consensus        75 ~~Di~d~~~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS~~vyg~  147 (348)
T PRK15181         75 QGDIRKFTDCQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYGD  147 (348)
T ss_pred             EccCCCHHHHHHHhhCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeechHhhCC
Confidence            5565443222345667787777431                 11122344567777775 6888877655553

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=93.49  E-value=0.26  Score=48.53  Aligned_cols=107  Identities=21%  Similarity=0.404  Sum_probs=64.2

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccC--------cccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeE
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE--------VSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSI   84 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve--------~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i   84 (410)
                      ++|.|||+|-+|+-++..++..|+. +++.|...-.        ..+|.|+.     .-|+-+.+.....+.++.|...+
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~~G~~-V~l~D~~~~~~~~~~~~i~~~l~k~~-----~~g~l~~~~~~~~l~~i~~~~~~   77 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFALAGYD-VVLKDISPEALERALAYIEKNLEKLV-----EKGKLTEEEADAALARITPTTDL   77 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhhcCCc-eEEEeCCHHHHHHHHHHHHHHHHHHH-----hcCCCChhhHHHHHhhccccCch
Confidence            6899999999999999999996655 8888865111        11222221     11333333334444444332211


Q ss_pred             EEEccCCCCCcchHhhhccCcEEEEcc-CChHHHHHHHHHHHHCCC--cEEEecccCc
Q 015243           85 TAHHANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGF  139 (410)
Q Consensus        85 ~~~~~~i~~~~~~~~~~~~~DvVi~a~-Dn~~~r~~i~~~c~~~~~--p~i~~g~~G~  139 (410)
                                    .-++++|+||.|. .|.+.+..+-+..-..-.  .++.+.|.+.
T Consensus        78 --------------~~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl  121 (307)
T COG1250          78 --------------AALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSL  121 (307)
T ss_pred             --------------hHhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCC
Confidence                          2468999999975 667776665554444433  3566666554

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.47  E-value=0.25  Score=49.91  Aligned_cols=96  Identities=13%  Similarity=0.208  Sum_probs=55.5

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCC------CcEEEEeCCccCcccCccccCCCCCCC-CchHHHHHHHHH--HhhCCC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGF------QDIHIIDMDTIEVSNLNRQFLFRQSHV-GQSKAKVARDAV--LKFRPQ   81 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv------~~i~liD~D~Ve~sNL~Rq~lf~~~di-G~~Ka~~a~~~l--~~~np~   81 (410)
                      ...+|.|+|+|+.|+.++..|+..|.      .++++...|.               ++ |+.-++.+.+.=  .+.-|+
T Consensus        10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~---------------~~~~~~~~~~in~~~~N~~ylp~   74 (365)
T PTZ00345         10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEE---------------IVEGEKLSDIINTKHENVKYLPG   74 (365)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecc---------------cccchHHHHHHHhcCCCcccCCC
Confidence            35689999999999999999999883      3555553221               11 222222221110  011233


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHH
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC  124 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c  124 (410)
                      +++   +.++.-.....+.++++|+|+.++.....|..+.++.
T Consensus        75 ~~L---p~ni~~tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~  114 (365)
T PTZ00345         75 IKL---PDNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIK  114 (365)
T ss_pred             CcC---CCceEEecCHHHHHhcCCEEEEEcChHHHHHHHHHhc
Confidence            322   2222111112356789999999998877777777764

>PRK06223 malate dehydrogenase; Reviewed

Probab=93.46  E-value=0.35  Score=47.40  Aligned_cols=32  Identities=34%  Similarity=0.678  Sum_probs=29.5

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .||.|+|+|.+|+.++..++..|.+.+.|+|.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~   34 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI   34 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence            58999999999999999999998669999985

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=93.44  E-value=0.17  Score=49.53  Aligned_cols=32  Identities=28%  Similarity=0.506  Sum_probs=27.3

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      +|.|||+|.+|+.++.+|+..|. ++.+.|.+.
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~   33 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQ   33 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            69999999999999999999995 467777543

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.42  E-value=0.28  Score=45.76  Aligned_cols=35  Identities=23%  Similarity=0.540  Sum_probs=30.0

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +++++|+|.| .|++|.++++.|+..|.. +++++.+
T Consensus         3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~   38 (251)
T PRK07231          3 LEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRN   38 (251)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence            5678999998 589999999999999976 8887744

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=93.41  E-value=0.65  Score=46.13  Aligned_cols=35  Identities=31%  Similarity=0.305  Sum_probs=28.8

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +++++|+|.| +|.||+.+++.|+..|. +++++|.+
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~   37 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLD   37 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCC
Confidence            4578999999 58899999999999995 47776644

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK07340 ornithine cyclodeaminase; Validated

Probab=93.38  E-value=0.28  Score=48.34  Aligned_cols=76  Identities=9%  Similarity=0.101  Sum_probs=54.8

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHH-hCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLAL-SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~-~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      +...++++|+|+|+.|...++.+.. .|+.++.+.|.                   ...|++.+++.+++..  +.+.  
T Consensus       122 ~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r-------------------~~~~a~~~a~~~~~~~--~~~~--  178 (304)
T PRK07340        122 PAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGR-------------------TAASAAAFCAHARALG--PTAE--  178 (304)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcC-------------------CHHHHHHHHHHHHhcC--CeeE--
Confidence            3456889999999999999999975 68888888752                   2457777777776542  2222  


Q ss_pred             ccCCCCCcchHhhhccCcEEEEccCC
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGLDN  113 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn  113 (410)
                      ...      ..+.+.++|+|+.|+-+
T Consensus       179 ~~~------~~~av~~aDiVitaT~s  198 (304)
T PRK07340        179 PLD------GEAIPEAVDLVVTATTS  198 (304)
T ss_pred             ECC------HHHHhhcCCEEEEccCC
Confidence            111      23557899999999875

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=93.33  E-value=0.54  Score=46.49  Aligned_cols=90  Identities=19%  Similarity=0.257  Sum_probs=57.5

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      .+.+++|.|||.|.||.++++.|...|+. +..+|...             ...                 +.+.  ...
T Consensus       133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~~-V~~~~~~~-------------~~~-----------------~~~~--~~~  179 (312)
T PRK15469        133 HREDFTIGILGAGVLGSKVAQSLQTWGFP-LRCWSRSR-------------KSW-----------------PGVQ--SFA  179 (312)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCC-------------CCC-----------------CCce--eec
Confidence            47889999999999999999999998874 66666311             000                 0111  110


Q ss_pred             cCCCCCcchHhhhccCcEEEEccC-ChHHHHHHHHHHHH---CCCcEEEec
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLD-NLDARRHVNRLCLA---ADVPLVESG  135 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~D-n~~~r~~i~~~c~~---~~~p~i~~g  135 (410)
                       ..   ..-++++.++|+|+.++. +.+++..+++-...   .+.-+|+.+
T Consensus       180 -~~---~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~a  226 (312)
T PRK15469        180 -GR---EELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLA  226 (312)
T ss_pred             -cc---ccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence             01   113477899999999764 56677777754332   234456654

>PRK06194 hypothetical protein; Provisional

Probab=93.19  E-value=0.43  Score=45.77  Aligned_cols=34  Identities=24%  Similarity=0.462  Sum_probs=28.8

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +++++++|.| .|+||.++++.|+..|. +++++|.
T Consensus         4 ~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r   38 (287)
T PRK06194          4 FAGKVAVITGAASGFGLAFARIGAALGM-KLVLADV   38 (287)
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeC
Confidence            5577899998 68999999999999997 4788774

>PRK07680 late competence protein ComER; Validated

Probab=93.19  E-value=0.55  Score=45.22  Aligned_cols=89  Identities=19%  Similarity=0.277  Sum_probs=53.2

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCC---CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           14 KVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv---~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      +|.|||+|.+|+.++..|...|.   ..+++.|.+.                   .+++.    +.+..+.+.+..    
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~-------------------~~~~~----~~~~~~g~~~~~----   54 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTP-------------------AKAYH----IKERYPGIHVAK----   54 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCH-------------------HHHHH----HHHHcCCeEEEC----
Confidence            69999999999999999999985   3566665321                   12222    222223332211    


Q ss_pred             CCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHH--CCCcEEEe
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA--ADVPLVES  134 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~--~~~p~i~~  134 (410)
                           ...+...++|+||.|+-....+..+.++...  .+..+++.
T Consensus        55 -----~~~~~~~~aDiVilav~p~~~~~vl~~l~~~l~~~~~iis~   95 (273)
T PRK07680         55 -----TIEEVISQSDLIFICVKPLDIYPLLQKLAPHLTDEHCLVSI   95 (273)
T ss_pred             -----CHHHHHHhCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEE
Confidence                 1234567899999998655555555554322  23444544

>PTZ00325 malate dehydrogenase; Provisional

Probab=93.18  E-value=0.24  Score=49.17  Aligned_cols=35  Identities=34%  Similarity=0.493  Sum_probs=30.4

Q ss_pred             HhCCcEEEECC-cHHHHHHHHHHHHhCCC-cEEEEeC
Q 015243           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQ-DIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG~-GgiG~ev~knLa~~Gv~-~i~liD~   44 (410)
                      ++..||.|+|+ |.+|+.++..|+..|.. ++.|+|-
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di   42 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI   42 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence            45669999998 99999999999988874 7999995

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=93.16  E-value=0.5  Score=45.95  Aligned_cols=32  Identities=25%  Similarity=0.468  Sum_probs=26.9

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ++|+|.| +|.+|..+++.|+..|. +++.+|..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~-~V~~~~r~   33 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGE-EVRVLVRP   33 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCC-EEEEEEec
Confidence            3689998 59999999999999995 68887754

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=93.16  E-value=0.27  Score=49.35  Aligned_cols=93  Identities=17%  Similarity=0.193  Sum_probs=56.0

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~   92 (410)
                      .+|+|+|+|++|.-.+..+...|.+.+.++|.+.                   .|.+.|++..    ..-.+....... 
T Consensus       170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~-------------------~Rl~~A~~~~----g~~~~~~~~~~~-  225 (350)
T COG1063         170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP-------------------ERLELAKEAG----GADVVVNPSEDD-  225 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH-------------------HHHHHHHHhC----CCeEeecCcccc-
Confidence            3899999999999999999999999999997432                   2333333321    100010000000 


Q ss_pred             CCcchHhhh--ccCcEEEEccCChHHHHHHHHHHHHCCC
Q 015243           93 DPKFNVEFF--KQFNVVLNGLDNLDARRHVNRLCLAADV  129 (410)
Q Consensus        93 ~~~~~~~~~--~~~DvVi~a~Dn~~~r~~i~~~c~~~~~  129 (410)
                      ......+.-  ..+|+||.|+.+..+.....++++..+.
T Consensus       226 ~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~  264 (350)
T COG1063         226 AGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGT  264 (350)
T ss_pred             HHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCE
Confidence            000000111  4699999999987766666666666554

>PRK05867 short chain dehydrogenase; Provisional

Probab=93.12  E-value=0.48  Score=44.55  Aligned_cols=33  Identities=30%  Similarity=0.519  Sum_probs=28.1

Q ss_pred             HhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEe
Q 015243           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        10 L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      +++++++|.|+ ||||.++++.|+..|.. +.+++
T Consensus         7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~-V~~~~   40 (253)
T PRK05867          7 LHGKRALITGASTGIGKRVALAYVEAGAQ-VAIAA   40 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEc
Confidence            56788999985 89999999999999974 66665

>PRK05866 short chain dehydrogenase; Provisional

Probab=93.09  E-value=0.47  Score=46.12  Aligned_cols=35  Identities=26%  Similarity=0.491  Sum_probs=29.1

Q ss_pred             HHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .+.+++|+|.|+ ||||.++++.|+..|. ++.++|.
T Consensus        37 ~~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R   72 (293)
T PRK05866         37 DLTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVAR   72 (293)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence            456788999984 9999999999999996 5777663

>PTZ00117 malate dehydrogenase; Provisional

Probab=93.09  E-value=0.13  Score=51.07  Aligned_cols=36  Identities=28%  Similarity=0.471  Sum_probs=32.3

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .++.+|.|||+|.+|..++..|+..|+..+.|+|-+
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~   38 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI   38 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence            357899999999999999999999998889999953

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=93.03  E-value=0.59  Score=46.32  Aligned_cols=99  Identities=23%  Similarity=0.351  Sum_probs=57.1

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC--ccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD--TIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D--~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      ++|.|+|+|+.|+.+++-|+..| ..+++-..|  .++.=|-.|+-                   .++-|++.+   +..
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~r~~~~~~~i~~~~~N-------------------~~yLp~i~l---p~~   58 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGRDEEIVAEINETREN-------------------PKYLPGILL---PPN   58 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcC-CeeEEEecCHHHHHHHHhcCcC-------------------ccccCCccC---Ccc
Confidence            68999999999999999999999 445554322  22211111000                   011122221   111


Q ss_pred             CCCCcchHhhhccCcEEEEccCChHHHHHHHHHH--HHCCCcEEEe
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC--LAADVPLVES  134 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c--~~~~~p~i~~  134 (410)
                      +.-.....+-.+++|+|+.++.+.-.|..+.++-  ...+.+++.+
T Consensus        59 l~at~Dl~~a~~~ad~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~  104 (329)
T COG0240          59 LKATTDLAEALDGADIIVIAVPSQALREVLRQLKPLLLKDAIIVSA  104 (329)
T ss_pred             cccccCHHHHHhcCCEEEEECChHHHHHHHHHHhhhccCCCeEEEE
Confidence            1111113455678999999999887787777762  2344555554

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=93.01  E-value=0.38  Score=46.87  Aligned_cols=104  Identities=21%  Similarity=0.274  Sum_probs=57.8

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        13 ~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      +||||.|+ |-||+.+++.|...|  +++.+|...-          +...|+-.  .+.+.+.+++..|++=|+.  ...
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~~~~----------~~~~Dl~d--~~~~~~~~~~~~~D~Vih~--Aa~   64 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG--NLIALDVHST----------DYCGDFSN--PEGVAETVRKIRPDVIVNA--AAH   64 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC--CEEEeccccc----------cccCCCCC--HHHHHHHHHhcCCCEEEEC--Ccc
Confidence            37999985 999999999999888  5777774310          11234433  2334455555555543322  111


Q ss_pred             CCCc---chHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCcc
Q 015243           92 KDPK---FNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFL  140 (410)
Q Consensus        92 ~~~~---~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~  140 (410)
                      ....   .+.+..        -..|...-..+-+.|...++++|..++...+
T Consensus        65 ~~~~~~~~~~~~~--------~~~N~~~~~~l~~aa~~~g~~~v~~Ss~~Vy  108 (299)
T PRK09987         65 TAVDKAESEPEFA--------QLLNATSVEAIAKAANEVGAWVVHYSTDYVF  108 (299)
T ss_pred             CCcchhhcCHHHH--------HHHHHHHHHHHHHHHHHcCCeEEEEccceEE
Confidence            1000   000000        0113344456777888889999988765433

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=92.99  E-value=0.13  Score=53.00  Aligned_cols=36  Identities=36%  Similarity=0.564  Sum_probs=32.9

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .+.+.+|+|+|+|.+|..+++.|...|+.+++++|.
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r  212 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANR  212 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeC
Confidence            367899999999999999999999999999999874

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=92.96  E-value=0.67  Score=45.97  Aligned_cols=32  Identities=41%  Similarity=0.696  Sum_probs=28.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~   34 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRA   34 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecH
Confidence            589999999999999999999995 58888753

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=92.92  E-value=0.97  Score=43.54  Aligned_cols=31  Identities=23%  Similarity=0.476  Sum_probs=25.0

Q ss_pred             cEEEEC-CcHHHHHHHHHHHHhCC-CcEEEEeC
Q 015243           14 KVLMVG-AGGIGCELLKTLALSGF-QDIHIIDM   44 (410)
Q Consensus        14 ~VlvvG-~GgiG~ev~knLa~~Gv-~~i~liD~   44 (410)
                      +|+|.| .|.+|..+++.|...|- .+++++|.
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~   33 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK   33 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence            588998 59999999999998874 35777653

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=92.90  E-value=0.14  Score=47.16  Aligned_cols=35  Identities=26%  Similarity=0.524  Sum_probs=31.1

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      |++++|+|+|.|.+|..+++.|...|. +++++|.+
T Consensus        26 l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~   60 (200)
T cd01075          26 LEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN   60 (200)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            678999999999999999999999997 57787754

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.88  E-value=0.48  Score=46.66  Aligned_cols=34  Identities=38%  Similarity=0.474  Sum_probs=30.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .++|+|.|+|+||--...-+-.+|.+++.++|-.
T Consensus       170 Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~  203 (354)
T KOG0024|consen  170 GSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLV  203 (354)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecC
Confidence            6799999999999998888889999999999843

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=92.85  E-value=0.29  Score=53.76  Aligned_cols=157  Identities=17%  Similarity=0.212  Sum_probs=86.9

Q ss_pred             CcEEEECCcHHHHHHHHHHH-HhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHH-HHHHHHh--hCCC------C
Q 015243           13 AKVLMVGAGGIGCELLKTLA-LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKV-ARDAVLK--FRPQ------M   82 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa-~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~-a~~~l~~--~np~------v   82 (410)
                      ++|.|||+|.+|+.++..++ ..|+. ++|+|.+.-   .+.+-         ..+... +.+.+++  +.+.      -
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~-V~l~d~~~~---~l~~~---------~~~~~~~l~~~~~~~~~~~~~~~~~~~  371 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIP-VRIKDINPQ---GINNA---------LKYAWKLLDKGVKRRHMTPAERDNQMA  371 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCe-EEEEeCCHH---HHHHH---------HHHHHHHHHHHHHcCCCCHHHHHHHHc
Confidence            47999999999999999998 48975 889986532   12111         111111 1111110  0000      0


Q ss_pred             eEEEEccCCCCCcchHhhhccCcEEEEcc-CChHHHHHHHHHHHHCCC--cEEEecccCccc-eEEEEeCCCCccccccC
Q 015243           83 SITAHHANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGFLG-QVTVHVKGKTECYECQP  158 (410)
Q Consensus        83 ~i~~~~~~i~~~~~~~~~~~~~DvVi~a~-Dn~~~r~~i~~~c~~~~~--p~i~~g~~G~~G-~v~~~~~~~t~c~~C~~  158 (410)
                      .|+..     . .  .+-++++|+||.|+ .+.+.+..+-......-.  .++.+.|.++.- .+.-......-+...++
T Consensus       372 ~i~~~-----~-~--~~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~Hf  443 (699)
T TIGR02440       372 LITGT-----T-D--YRGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHY  443 (699)
T ss_pred             CeEEe-----C-C--hHHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEec
Confidence            12211     1 1  13368999999985 567776666555544433  355555544321 01001112222344444


Q ss_pred             CCCCCCCCceeeccCCCcchHHHHHHHHHHHHH
Q 015243          159 KPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAK  191 (410)
Q Consensus       159 ~~~~~~~p~cti~~~p~~~~h~i~~a~~~~f~~  191 (410)
                      -.++...|...+...+.+....+.++.+ ++..
T Consensus       444 fnP~~~~~lVEvv~g~~T~~~~~~~~~~-~~~~  475 (699)
T TIGR02440       444 FSPVEKMPLVEVIPHAGTSEQTIATTVA-LAKK  475 (699)
T ss_pred             CCccccCceEEEeCCCCCCHHHHHHHHH-HHHH
Confidence            4455666888888888888888999887 4554

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=92.81  E-value=0.35  Score=46.17  Aligned_cols=88  Identities=18%  Similarity=0.193  Sum_probs=50.3

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCC--cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~--~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      +|.+||+|.+|..+++.|...|..  .+.+.|.                   ...|++.+++    ..+.+.+.      
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r-------------------~~~~~~~l~~----~~~~~~~~------   52 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPR-------------------NAQIAARLAE----RFPKVRIA------   52 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEECC-------------------CHHHHHHHHH----HcCCceEe------
Confidence            699999999999999999998853  2333321                   1223332222    22322221      


Q ss_pred             CCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEE
Q 015243           92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVE  133 (410)
Q Consensus        92 ~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~  133 (410)
                      .   ...+..+++|+|+.|+........+.......+..+|+
T Consensus        53 ~---~~~~~~~~aDvVilav~p~~~~~vl~~l~~~~~~~vis   91 (258)
T PRK06476         53 K---DNQAVVDRSDVVFLAVRPQIAEEVLRALRFRPGQTVIS   91 (258)
T ss_pred             C---CHHHHHHhCCEEEEEeCHHHHHHHHHHhccCCCCEEEE
Confidence            1   12345678999999987544555454432223444454

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=92.79  E-value=1.1  Score=41.83  Aligned_cols=83  Identities=27%  Similarity=0.232  Sum_probs=49.9

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC--CC--eEEEE
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP--QM--SITAH   87 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np--~v--~i~~~   87 (410)
                      ++|.|+| +|.+|+.+++.|+..| .++++.|.+                   ..|++.+++.......  ..  ++...
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~-------------------~~~~~~l~~~~~~~~~~~g~~~~~~~~   60 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRD-------------------LEKAEEAAAKALEELGHGGSDIKVTGA   60 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcC-------------------HHHHHHHHHHHHhhccccCCCceEEEe
Confidence            3799997 8999999999999998 567776532                   1233333332211111  01  11111


Q ss_pred             ccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHH
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL  123 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~  123 (410)
                              ...+...++|+||.|+-....+..+.++
T Consensus        61 --------~~~ea~~~aDvVilavp~~~~~~~l~~l   88 (219)
T TIGR01915        61 --------DNAEAAKRADVVILAVPWDHVLKTLESL   88 (219)
T ss_pred             --------ChHHHHhcCCEEEEECCHHHHHHHHHHH
Confidence                    1134567899999998766665555544

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.74  E-value=0.5  Score=44.00  Aligned_cols=34  Identities=26%  Similarity=0.571  Sum_probs=29.4

Q ss_pred             HhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      |.+++++|.|+ |++|..+++.|+..|. ++.++|.
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r   37 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDL   37 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            56789999996 9999999999999997 4777773

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=92.71  E-value=0.26  Score=51.56  Aligned_cols=122  Identities=13%  Similarity=0.235  Sum_probs=69.0

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCch--HHHHHHHHHHhh-CCCCeEEEEcc
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQS--KAKVARDAVLKF-RPQMSITAHHA   89 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~--Ka~~a~~~l~~~-np~v~i~~~~~   89 (410)
                      ++|.|||+|..|..++.+|+..|. ++++.|.+.=....+....   . .-|..  -+..+++.+..+ .|++-+.....
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~~---~-~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~   76 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKKA---K-EGNTRVKGYHTLEELVNSLKKPRKVILLIKA   76 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhh---h-hcCCcceecCCHHHHHhcCCCCCEEEEEeCC
Confidence            579999999999999999999998 5888886443222221100   0 00100  122234444433 34433332211


Q ss_pred             -CCCCCcc--hHhhhccCcEEEEccCC-hHHHHHHHHHHHHCCCcEEEecccCc
Q 015243           90 -NVKDPKF--NVEFFKQFNVVLNGLDN-LDARRHVNRLCLAADVPLVESGTTGF  139 (410)
Q Consensus        90 -~i~~~~~--~~~~~~~~DvVi~a~Dn-~~~r~~i~~~c~~~~~p~i~~g~~G~  139 (410)
                       ...+...  ....++.-|+||++... ++.-....+.+...++-++++++.|.
T Consensus        77 ~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG  130 (470)
T PTZ00142         77 GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGG  130 (470)
T ss_pred             hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCC
Confidence             1111111  11234566899997643 44444445777888999999998874

>PLN02206 UDP-glucuronate decarboxylase

Probab=92.63  E-value=0.95  Score=46.97  Aligned_cols=103  Identities=18%  Similarity=0.245  Sum_probs=60.6

Q ss_pred             hCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      +++||+|.| .|-||+.+++.|...|.. +..+|.....                + +... ...+  .++  +++.+..
T Consensus       118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~-V~~ld~~~~~----------------~-~~~~-~~~~--~~~--~~~~i~~  174 (442)
T PLN02206        118 KGLRVVVTGGAGFVGSHLVDRLMARGDS-VIVVDNFFTG----------------R-KENV-MHHF--SNP--NFELIRH  174 (442)
T ss_pred             CCCEEEEECcccHHHHHHHHHHHHCcCE-EEEEeCCCcc----------------c-hhhh-hhhc--cCC--ceEEEEC
Confidence            568999998 699999999999999864 6666642210                0 0000 0000  122  2333334


Q ss_pred             CCCCCcchHhhhccCcEEEEccC---------Ch--------HHHHHHHHHHHHCCCcEEEecccCccc
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLD---------NL--------DARRHVNRLCLAADVPLVESGTTGFLG  141 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~D---------n~--------~~r~~i~~~c~~~~~p~i~~g~~G~~G  141 (410)
                      ++.+     ..+.++|+||.+..         +.        ..-..+-+.|++.++++|..++...+|
T Consensus       175 D~~~-----~~l~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~~VYg  238 (442)
T PLN02206        175 DVVE-----PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG  238 (442)
T ss_pred             CccC-----hhhcCCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECChHHhC
Confidence            4422     23457899888542         11        112345567888888999888766554

>PRK08291 ectoine utilization protein EutC; Validated

Probab=92.63  E-value=0.57  Score=46.65  Aligned_cols=75  Identities=13%  Similarity=0.201  Sum_probs=52.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHHH-hCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           12 GAKVLMVGAGGIGCELLKTLAL-SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~-~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      .++++|+|+|+.|...+..|.. .|+.++++++.                   ...|++.+++.+++.. .+++.... +
T Consensus       132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R-------------------~~~~a~~l~~~~~~~~-g~~v~~~~-d  190 (330)
T PRK08291        132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWAR-------------------DAAKAEAYAADLRAEL-GIPVTVAR-D  190 (330)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcC-------------------CHHHHHHHHHHHhhcc-CceEEEeC-C
Confidence            4689999999999999999985 57889999752                   2346777777665432 23433321 1


Q ss_pred             CCCCcchHhhhccCcEEEEccCC
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLDN  113 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~Dn  113 (410)
                            ..+.+.++|+|++|+..
T Consensus       191 ------~~~al~~aDiVi~aT~s  207 (330)
T PRK08291        191 ------VHEAVAGADIIVTTTPS  207 (330)
T ss_pred             ------HHHHHccCCEEEEeeCC
Confidence                  23556789999999865

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=92.61  E-value=0.51  Score=41.05  Aligned_cols=79  Identities=22%  Similarity=0.303  Sum_probs=50.9

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      +.|+|.| .||||-++++.|+..|-.++.+++.+                 .-..+.+.+.+.+...+  .++.....++
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~-----------------~~~~~~~~l~~~l~~~~--~~~~~~~~D~   61 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRS-----------------EDSEGAQELIQELKAPG--AKITFIECDL   61 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS-----------------CHHHHHHHHHHHHHHTT--SEEEEEESET
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec-----------------ccccccccccccccccc--cccccccccc
Confidence            3678887 88999999999999998889888644                 11234445555555433  6777776666


Q ss_pred             CCCcchH-------hhhccCcEEEEc
Q 015243           92 KDPKFNV-------EFFKQFNVVLNG  110 (410)
Q Consensus        92 ~~~~~~~-------~~~~~~DvVi~a  110 (410)
                      ++.....       +.+...|++|++
T Consensus        62 ~~~~~~~~~~~~~~~~~~~ld~li~~   87 (167)
T PF00106_consen   62 SDPESIRALIEEVIKRFGPLDILINN   87 (167)
T ss_dssp             TSHHHHHHHHHHHHHHHSSESEEEEE
T ss_pred             cccccccccccccccccccccccccc
Confidence            4321111       123456677665

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=92.59  E-value=0.38  Score=52.99  Aligned_cols=158  Identities=13%  Similarity=0.103  Sum_probs=83.6

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCccc----CccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSN----LNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sN----L~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      ++|.|||+|.+|+.++..++..|+. ++|+|.+.=....    +.+. +=..-+-|+...+.+.+.+.++      +.. 
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~~~~~l~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~i------~~~-  384 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTP-IVMKDINQHSLDLGLTEAAKL-LNKQVERGRITPAKMAGVLNGI------TPT-  384 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCe-EEEEeCCHHHHHHHHHHHHHH-HHHHHHcCCCChhhHHHHHhCe------EEe-
Confidence            4799999999999999999999975 8999865432211    0000 0000011221112222222222      111 


Q ss_pred             cCCCCCcchHhhhccCcEEEEcc-CChHHHHHHHHHHHHCCC--cEEEecccCccc-eEEEEeCCCCccccccCCCCCCC
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGFLG-QVTVHVKGKTECYECQPKPAPKT  164 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~-Dn~~~r~~i~~~c~~~~~--p~i~~g~~G~~G-~v~~~~~~~t~c~~C~~~~~~~~  164 (410)
                           .  +.+-++++|+||.|+ .+.+.+..+-+.....-.  .++.+.|.+..- .+........-+..-++-.++..
T Consensus       385 -----~--~~~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~  457 (714)
T TIGR02437       385 -----L--SYAGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHR  457 (714)
T ss_pred             -----C--CHHHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCccc
Confidence                 0  113368999999985 567776666555544333  345555444321 00000111111233233334445


Q ss_pred             CCceeeccCCCcchHHHHHHHH
Q 015243          165 YPVCTITSTPSKFVHCIVWAKD  186 (410)
Q Consensus       165 ~p~cti~~~p~~~~h~i~~a~~  186 (410)
                      .|.-.|...+.+....+..+.+
T Consensus       458 ~~lvEvv~g~~Ts~~~~~~~~~  479 (714)
T TIGR02437       458 MPLVEVIRGEKSSDETIATVVA  479 (714)
T ss_pred             CceEeecCCCCCCHHHHHHHHH
Confidence            5777777777777778888877

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=92.59  E-value=0.41  Score=50.54  Aligned_cols=33  Identities=27%  Similarity=0.520  Sum_probs=28.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      =++|.|||+|.+|+.++.+|+..|.. ++++|.+
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~~-V~l~d~~   37 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGHQ-VLLYDIR   37 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCC
Confidence            46799999999999999999999965 8888754

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK08339 short chain dehydrogenase; Provisional

Probab=92.51  E-value=0.65  Score=44.20  Aligned_cols=34  Identities=24%  Similarity=0.467  Sum_probs=28.6

Q ss_pred             HhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      |+++.++|.|+ ||||.++++.|+..|. ++.++|.
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r   40 (263)
T PRK08339          6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSR   40 (263)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence            56788899985 7999999999999997 4777763

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=92.48  E-value=0.83  Score=48.05  Aligned_cols=122  Identities=18%  Similarity=0.268  Sum_probs=70.0

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCch---HHHHHHHHHHhh-CCCCeEEEEc
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQS---KAKVARDAVLKF-RPQMSITAHH   88 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~---Ka~~a~~~l~~~-np~v~i~~~~   88 (410)
                      .+|.+||+|..|..+++||+..|.. +++.|.+.=....+...    ...-|..   -+...++.+..+ .|++-+....
T Consensus         7 ~~IG~IGLG~MG~~mA~nL~~~G~~-V~V~NRt~~k~~~l~~~----~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~   81 (493)
T PLN02350          7 SRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTTSKVDETVER----AKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVK   81 (493)
T ss_pred             CCEEEEeeHHHHHHHHHHHHhCCCe-EEEECCCHHHHHHHHHh----hhhcCCcccccCCCHHHHHhcCCCCCEEEEECC
Confidence            4799999999999999999999974 88877542111111100    0000211   122233444332 2554444332


Q ss_pred             cCC-CCCcc--hHhhhccCcEEEEccCC-hHHHHHHHHHHHHCCCcEEEecccCc
Q 015243           89 ANV-KDPKF--NVEFFKQFNVVLNGLDN-LDARRHVNRLCLAADVPLVESGTTGF  139 (410)
Q Consensus        89 ~~i-~~~~~--~~~~~~~~DvVi~a~Dn-~~~r~~i~~~c~~~~~p~i~~g~~G~  139 (410)
                      ..- .+..+  ....++.-|+||++... ++.-..+.+.+.+.++.|+++++.|.
T Consensus        82 ~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG  136 (493)
T PLN02350         82 AGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGG  136 (493)
T ss_pred             CcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCC
Confidence            221 01111  01224556899997544 55566668888899999999998864

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=92.47  E-value=0.66  Score=43.67  Aligned_cols=33  Identities=21%  Similarity=0.479  Sum_probs=27.2

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +++|+|.| .|+||.++++.|+..|. ++.++|.+
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~   35 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADIN   35 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            56789998 57999999999999996 57787743

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=92.43  E-value=1.1  Score=44.36  Aligned_cols=32  Identities=28%  Similarity=0.484  Sum_probs=26.7

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ++|+|.| .|.+|+.+++.|...|...+.++|.
T Consensus         2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~   34 (355)
T PRK10217          2 RKILITGGAGFIGSALVRYIINETSDAVVVVDK   34 (355)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEec
Confidence            4799998 5889999999999999776666663

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=92.41  E-value=1.1  Score=43.15  Aligned_cols=89  Identities=18%  Similarity=0.146  Sum_probs=51.9

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhC--CCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSG--FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~G--v~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      .||.|||+|.+|..+++.|...+  +.-+.++|.+                   ..|++.+++   ...  ..  .+   
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~-------------------~~~a~~~a~---~~~--~~--~~---   52 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRN-------------------LEKAENLAS---KTG--AK--AC---   52 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC-------------------HHHHHHHHH---hcC--Ce--eE---
Confidence            47999999999999999998764  3333444432                   123333322   111  11  11   


Q ss_pred             CCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEec
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g  135 (410)
                       +  . .++++.+.|+|+.|+.. .....+-..+.+.++.++...
T Consensus        53 -~--~-~~ell~~~DvVvi~a~~-~~~~~~~~~al~~Gk~Vvv~s   92 (265)
T PRK13304         53 -L--S-IDELVEDVDLVVECASV-NAVEEVVPKSLENGKDVIIMS   92 (265)
T ss_pred             -C--C-HHHHhcCCCEEEEcCCh-HHHHHHHHHHHHcCCCEEEEc
Confidence             1  1 23445789999998754 333344445556788776643

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=92.38  E-value=0.51  Score=50.91  Aligned_cols=89  Identities=12%  Similarity=0.224  Sum_probs=62.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      +.+|+|+|.|.+|..+++.|...|.. ++++|.|.-                   +++.    +++.    ....+.++.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~~-------------------~v~~----~~~~----g~~v~~GDa  451 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMR-ITVLERDIS-------------------AVNL----MRKY----GYKVYYGDA  451 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCC-EEEEECCHH-------------------HHHH----HHhC----CCeEEEeeC
Confidence            46899999999999999999999985 899996641                   2222    2222    223445555


Q ss_pred             CCCc-chHhhhccCcEEEEccCChHHHHHHHHHHHHCC
Q 015243           92 KDPK-FNVEFFKQFNVVLNGLDNLDARRHVNRLCLAAD  128 (410)
Q Consensus        92 ~~~~-~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~  128 (410)
                      ++.. ....-++++|.||.++||.+....+-..+++.+
T Consensus       452 t~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~  489 (601)
T PRK03659        452 TQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHF  489 (601)
T ss_pred             CCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHC
Confidence            4322 112235789999999999888888878887753

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=92.35  E-value=0.2  Score=48.51  Aligned_cols=32  Identities=28%  Similarity=0.448  Sum_probs=30.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      +++|+|+|+||.|..++..|...|+++|+|++
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~n  153 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVA  153 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEe
Confidence            35899999999999999999999999999987

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=92.35  E-value=0.17  Score=49.69  Aligned_cols=33  Identities=27%  Similarity=0.406  Sum_probs=29.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ..||+|+|+|++|+.++-.|+++|. .+++++..
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~   34 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD   34 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence            5689999999999999999999995 58888753

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=92.35  E-value=0.18  Score=47.19  Aligned_cols=38  Identities=32%  Similarity=0.460  Sum_probs=34.6

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      .|+.++|+|.|.|.+|..+++.|...|...+.+.|.+-
T Consensus        20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211          20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            46889999999999999999999999999999999653

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=92.34  E-value=0.21  Score=42.74  Aligned_cols=84  Identities=17%  Similarity=0.274  Sum_probs=46.1

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      =.+.||.|||+|-+|..+++.|...|.. +.-+               |.       +....++.+...-+...+..   
T Consensus         8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~-v~~v---------------~s-------rs~~sa~~a~~~~~~~~~~~---   61 (127)
T PF10727_consen    8 AARLKIGIIGAGRVGTALARALARAGHE-VVGV---------------YS-------RSPASAERAAAFIGAGAILD---   61 (127)
T ss_dssp             ----EEEEECTSCCCCHHHHHHHHTTSE-EEEE---------------SS-------CHH-HHHHHHC--TT--------
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHCCCe-EEEE---------------Ee-------CCcccccccccccccccccc---
Confidence            3567899999999999999999999953 3322               21       12223444444444433221   


Q ss_pred             CCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHH
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA  126 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~  126 (410)
                             ..+...++|+|+.++-+........+++..
T Consensus        62 -------~~~~~~~aDlv~iavpDdaI~~va~~La~~   91 (127)
T PF10727_consen   62 -------LEEILRDADLVFIAVPDDAIAEVAEQLAQY   91 (127)
T ss_dssp             -------TTGGGCC-SEEEE-S-CCHHHHHHHHHHCC
T ss_pred             -------cccccccCCEEEEEechHHHHHHHHHHHHh
Confidence                   124568899999998665665555565543

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.31  E-value=0.63  Score=43.14  Aligned_cols=32  Identities=31%  Similarity=0.582  Sum_probs=26.7

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEE
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHII   42 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~li   42 (410)
                      |++++++|.| .|++|.++++.|+..|.. +.++
T Consensus         3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~-v~~~   35 (247)
T PRK05565          3 LMGKVAIVTGASGGIGRAIAELLAKEGAK-VVIA   35 (247)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEE
Confidence            6678999998 589999999999999976 4444

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=92.28  E-value=0.34  Score=50.59  Aligned_cols=122  Identities=15%  Similarity=0.213  Sum_probs=68.2

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhh-CCCCeEEEEcc-CC
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKF-RPQMSITAHHA-NV   91 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~-np~v~i~~~~~-~i   91 (410)
                      .|.+||+|.+|..++.+|+..|. ++++.|.+.-....+...+  .. .-+-.-+...++.+..+ .|++-+..... ..
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~--~~-g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~   76 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEH--AK-GKKIVGAYSIEEFVQSLERPRKIMLMVKAGAP   76 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhc--cC-CCCceecCCHHHHHhhcCCCCEEEEECCCcHH
Confidence            47899999999999999999997 4888886543333222110  00 00000111223333332 35544444332 11


Q ss_pred             CCCcc--hHhhhccCcEEEEccC-ChHHHHHHHHHHHHCCCcEEEecccCc
Q 015243           92 KDPKF--NVEFFKQFNVVLNGLD-NLDARRHVNRLCLAADVPLVESGTTGF  139 (410)
Q Consensus        92 ~~~~~--~~~~~~~~DvVi~a~D-n~~~r~~i~~~c~~~~~p~i~~g~~G~  139 (410)
                      .+...  ....+..-|+||++.. .+..-....+.+...++-++++++.|.
T Consensus        77 v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG  127 (467)
T TIGR00873        77 VDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGG  127 (467)
T ss_pred             HHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCC
Confidence            11111  1123455689999764 334333345567788999999998873

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=92.26  E-value=0.17  Score=50.42  Aligned_cols=35  Identities=23%  Similarity=0.329  Sum_probs=32.5

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      .|.+++|+|||+|-+|..++++|...|+++|+++.
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~n  205 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCS  205 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEc
Confidence            47789999999999999999999999999999964

>PRK09186 flagellin modification protein A; Provisional

Probab=92.26  E-value=0.65  Score=43.51  Aligned_cols=33  Identities=36%  Similarity=0.574  Sum_probs=27.2

Q ss_pred             HhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEe
Q 015243           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        10 L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      +.+++|+|.|+ |+||.++++.|+..|.. +.+++
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~~-v~~~~   35 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGGI-VIAAD   35 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEe
Confidence            45788999984 89999999999999974 66654

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=92.24  E-value=0.79  Score=46.68  Aligned_cols=86  Identities=16%  Similarity=0.111  Sum_probs=54.7

Q ss_pred             HHHHHHHhCC----cEEEECC-cHHHHHHHHHHHHhCCCc------EEEEeCCccCcccCccccCCCCCCCCchHHHHHH
Q 015243            4 ERQLEAIKGA----KVLMVGA-GGIGCELLKTLALSGFQD------IHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVAR   72 (410)
Q Consensus         4 ~e~q~~L~~~----~VlvvG~-GgiG~ev~knLa~~Gv~~------i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~   72 (410)
                      .|.++.++++    ||.|+|+ |.+|+.++-.|+..|+-.      |+|+|.                 |+.+.|++..+
T Consensus        32 ~~~~~~~~~~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~di-----------------D~~~~~a~g~a   94 (387)
T TIGR01757        32 NEDKSLTKSWKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGS-----------------ERSKEALEGVA   94 (387)
T ss_pred             cchhHHHhcCCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEecc-----------------CccchhhhHHH
Confidence            3444445544    8999999 999999999999999843      666653                 34445555555


Q ss_pred             HHHHhhC-CCC-eEEEEccCCCCCcchHhhhccCcEEEEccCC
Q 015243           73 DAVLKFR-PQM-SITAHHANVKDPKFNVEFFKQFNVVLNGLDN  113 (410)
Q Consensus        73 ~~l~~~n-p~v-~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn  113 (410)
                      --|.... |.. ++....+       +.+-++++|+||.+...
T Consensus        95 ~DL~d~a~~~~~~v~i~~~-------~y~~~kdaDIVVitAG~  130 (387)
T TIGR01757        95 MELEDSLYPLLREVSIGID-------PYEVFEDADWALLIGAK  130 (387)
T ss_pred             HHHHHhhhhhcCceEEecC-------CHHHhCCCCEEEECCCC
Confidence            5555543 332 2221111       23557999999996543

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PRK06181 short chain dehydrogenase; Provisional

Probab=92.23  E-value=0.84  Score=43.02  Aligned_cols=31  Identities=32%  Similarity=0.453  Sum_probs=26.3

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        13 ~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ++|+|.|+ |++|.++++.|+..|. +++++|.
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r   33 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA-QLVLAAR   33 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            57899986 9999999999999996 6777763

>PLN02253 xanthoxin dehydrogenase

Probab=92.22  E-value=0.56  Score=44.84  Aligned_cols=35  Identities=29%  Similarity=0.560  Sum_probs=29.2

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ++.+++++|.| .|+||.++++.|+..|. ++.++|.
T Consensus        15 ~l~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~   50 (280)
T PLN02253         15 RLLGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDL   50 (280)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence            46778899997 68999999999999996 4777763

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=92.21  E-value=0.85  Score=43.99  Aligned_cols=64  Identities=28%  Similarity=0.521  Sum_probs=50.1

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      ++.++++|-| .+|||-|+++.|++-|.. +.|+-               |    -+.|-+.+++.+++.. .++++.+.
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~-liLva---------------R----~~~kL~~la~~l~~~~-~v~v~vi~   62 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGYN-LILVA---------------R----REDKLEALAKELEDKT-GVEVEVIP   62 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCE-EEEEe---------------C----cHHHHHHHHHHHHHhh-CceEEEEE
Confidence            4577899999 689999999999999976 66643               2    2457788889988877 77888887


Q ss_pred             cCCCCC
Q 015243           89 ANVKDP   94 (410)
Q Consensus        89 ~~i~~~   94 (410)
                      -++++.
T Consensus        63 ~DLs~~   68 (265)
T COG0300          63 ADLSDP   68 (265)
T ss_pred             CcCCCh
Confidence            777543

>PRK07478 short chain dehydrogenase; Provisional

Probab=92.21  E-value=0.73  Score=43.27  Aligned_cols=34  Identities=24%  Similarity=0.403  Sum_probs=28.3

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +.+++++|.| .||||.++++.|+..|. ++.+++.
T Consensus         4 ~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r   38 (254)
T PRK07478          4 LNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGAR   38 (254)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            5678899998 58999999999999997 4777663

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=92.15  E-value=1.4  Score=42.76  Aligned_cols=90  Identities=13%  Similarity=0.195  Sum_probs=53.8

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC---CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv---~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      .+|.|||+|.+|..+++.|...|.   .++.++|.+.                  ..|.+.    +....+.+.+.    
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~------------------~~~~~~----l~~~~~~~~~~----   55 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSK------------------NEHFNQ----LYDKYPTVELA----   55 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCc------------------HHHHHH----HHHHcCCeEEe----
Confidence            369999999999999999999983   4577765421                  011111    12222222211    


Q ss_pred             CCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHH--HCCCcEEE
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL--AADVPLVE  133 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~--~~~~p~i~  133 (410)
                         .  ...+..+++|+||.|+-....+..+.++..  ..+..++.
T Consensus        56 ---~--~~~e~~~~aDvVilavpp~~~~~vl~~l~~~l~~~~~ivS   96 (277)
T PRK06928         56 ---D--NEAEIFTKCDHSFICVPPLAVLPLLKDCAPVLTPDRHVVS   96 (277)
T ss_pred             ---C--CHHHHHhhCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEE
Confidence               1  123456789999999876556666655532  23444554

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=92.15  E-value=0.73  Score=45.51  Aligned_cols=34  Identities=26%  Similarity=0.318  Sum_probs=28.2

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +.+++|+|.| .|.+|+++++.|+..|.. ++++|.
T Consensus         4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~~-V~~~~r   38 (340)
T PLN02653          4 PPRKVALITGITGQDGSYLTEFLLSKGYE-VHGIIR   38 (340)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCCE-EEEEec
Confidence            4578899998 589999999999999974 666664

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=92.11  E-value=0.34  Score=51.41  Aligned_cols=33  Identities=27%  Similarity=0.447  Sum_probs=30.4

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      +.+++++|+|+||+|..+++.|+..|+ ++++++
T Consensus       377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~n  409 (529)
T PLN02520        377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIAN  409 (529)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEc
Confidence            567899999999999999999999999 899886

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=92.10  E-value=0.64  Score=43.35  Aligned_cols=33  Identities=33%  Similarity=0.448  Sum_probs=28.5

Q ss_pred             HhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEe
Q 015243           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        10 L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      |++++|+|.|+ |+||..+++.|+..|. ++.+++
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~   36 (248)
T TIGR01832         3 LEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAG   36 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEc
Confidence            57889999996 8999999999999997 477765

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=92.02  E-value=0.76  Score=46.06  Aligned_cols=99  Identities=15%  Similarity=0.187  Sum_probs=56.9

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCC-------CcEEEEeCCccCcccCccccCCCCCCC-CchHHHHHHHHHHhh--C----
Q 015243           14 KVLMVGAGGIGCELLKTLALSGF-------QDIHIIDMDTIEVSNLNRQFLFRQSHV-GQSKAKVARDAVLKF--R----   79 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv-------~~i~liD~D~Ve~sNL~Rq~lf~~~di-G~~Ka~~a~~~l~~~--n----   79 (410)
                      +|.|+|+|+.|+.++..|+..|.       .++++...+               +++ +..    ..+.+.+-  |    
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~---------------~~~~~~~----~~~~in~~~~n~~yl   61 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFE---------------EEIEGRN----LTEIINTTHENVKYL   61 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEec---------------cccCCHH----HHHHHHhcCCCcccc
Confidence            68999999999999999998882       356665431               111 111    12222221  1    


Q ss_pred             CCCeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHH--HCCCcEEEe
Q 015243           80 PQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL--AADVPLVES  134 (410)
Q Consensus        80 p~v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~--~~~~p~i~~  134 (410)
                      |+++   ...++.-.....+.++++|+|+.++.+...|..+.++..  +.+.+++.+
T Consensus        62 pgi~---Lp~~i~at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~  115 (342)
T TIGR03376        62 PGIK---LPANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISC  115 (342)
T ss_pred             CCCc---CCCCeEEECCHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEE
Confidence            2211   111111001123567899999999988777777766643  234566654

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=92.01  E-value=0.2  Score=51.58  Aligned_cols=35  Identities=37%  Similarity=0.619  Sum_probs=32.4

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +.+.+|+|+|+|++|..+++.|...|+.+++++|.
T Consensus       180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r  214 (423)
T PRK00045        180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANR  214 (423)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeC
Confidence            67899999999999999999999999999999864

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=91.99  E-value=0.66  Score=45.37  Aligned_cols=34  Identities=24%  Similarity=0.238  Sum_probs=29.2

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ...+|+|+|+|++|...+..+..+|...+.++|.
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~  177 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET  177 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence            4668999999999999998888899988877763

>PRK07814 short chain dehydrogenase; Provisional

Probab=91.99  E-value=0.84  Score=43.26  Aligned_cols=35  Identities=20%  Similarity=0.399  Sum_probs=29.5

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +.+++++|.| .|+||.++++.|+..|. ++.++|.+
T Consensus         8 ~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~   43 (263)
T PRK07814          8 LDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAART   43 (263)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5678899998 56899999999999998 68887743

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=91.93  E-value=0.48  Score=47.11  Aligned_cols=31  Identities=35%  Similarity=0.602  Sum_probs=27.6

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCC-C-----cEEEEe
Q 015243           13 AKVLMVGA-GGIGCELLKTLALSGF-Q-----DIHIID   43 (410)
Q Consensus        13 ~~VlvvG~-GgiG~ev~knLa~~Gv-~-----~i~liD   43 (410)
                      .||.|||+ |.+|+.++-.|+..|+ +     +|.|+|
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~D   41 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLD   41 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEe
Confidence            47999998 9999999999999987 4     688887

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=91.87  E-value=0.22  Score=48.64  Aligned_cols=35  Identities=23%  Similarity=0.462  Sum_probs=31.4

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .|.+++|+|+|+|++|..+++.|...|. +++++|.
T Consensus       148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R  182 (287)
T TIGR02853       148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGAR  182 (287)
T ss_pred             CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeC
Confidence            4678999999999999999999999997 7888774

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=91.84  E-value=0.41  Score=47.26  Aligned_cols=33  Identities=36%  Similarity=0.581  Sum_probs=29.4

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCC-CcEEEEeCC
Q 015243           13 AKVLMVGA-GGIGCELLKTLALSGF-QDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG~-GgiG~ev~knLa~~Gv-~~i~liD~D   45 (410)
                      .||.|||+ |.+|+.++-.|+..|+ .+|.|+|-.
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~   35 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV   35 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence            37999999 9999999999999897 579999954

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=91.82  E-value=0.68  Score=45.34  Aligned_cols=31  Identities=32%  Similarity=0.668  Sum_probs=28.1

Q ss_pred             EEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           15 VLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        15 VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      |.|||+|.+|+.++-.|+..|..+++|+|.+
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~   31 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV   31 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence            5799999999999999999886699999976

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.81  E-value=1  Score=46.52  Aligned_cols=35  Identities=26%  Similarity=0.555  Sum_probs=30.5

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +.+++|+|+|.|+.|..+++.|+..|. ++++.|.+
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~   37 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAE   37 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            457899999999999999999999996 48888854

>PRK12939 short chain dehydrogenase; Provisional

Probab=91.81  E-value=0.96  Score=42.04  Aligned_cols=33  Identities=30%  Similarity=0.589  Sum_probs=27.5

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      +.+++++|.| .|++|.++++.|+..|.. +.+++
T Consensus         5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~-v~~~~   38 (250)
T PRK12939          5 LAGKRALVTGAARGLGAAFAEALAEAGAT-VAFND   38 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHcCCE-EEEEe
Confidence            5678999998 489999999999999974 66654

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=91.80  E-value=0.83  Score=49.79  Aligned_cols=34  Identities=26%  Similarity=0.458  Sum_probs=30.7

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ..++|+|||+|..|-..|..|++.|.. ++|+|.+
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~-V~V~E~~  359 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVA-VTVYDRH  359 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence            467999999999999999999999986 9999864

>PRK06940 short chain dehydrogenase; Provisional

Probab=91.78  E-value=0.8  Score=43.95  Aligned_cols=31  Identities=29%  Similarity=0.608  Sum_probs=25.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ++.++|.|+||||.++++.|+ .|. ++.++|.
T Consensus         2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r   32 (275)
T PRK06940          2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADY   32 (275)
T ss_pred             CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeC
Confidence            567888899999999999996 674 6777764

>PRK06138 short chain dehydrogenase; Provisional

Probab=91.78  E-value=0.79  Score=42.75  Aligned_cols=33  Identities=27%  Similarity=0.482  Sum_probs=27.9

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      |++++++|.| .|++|..+++.|+..|. ++.+++
T Consensus         3 ~~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~   36 (252)
T PRK06138          3 LAGRVAIVTGAGSGIGRATAKLFAREGA-RVVVAD   36 (252)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEec
Confidence            5678999998 58999999999999985 477765

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=91.77  E-value=0.99  Score=43.04  Aligned_cols=35  Identities=31%  Similarity=0.579  Sum_probs=29.5

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .+++++++|.| .|++|.++++.|+..|. ++.++|.
T Consensus         7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r   42 (278)
T PRK08277          7 SLKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDR   42 (278)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            46778899998 58999999999999998 5777764

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=91.73  E-value=1.1  Score=45.93  Aligned_cols=41  Identities=32%  Similarity=0.506  Sum_probs=33.6

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccc
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQ   55 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq   55 (410)
                      +|.|||+|-+|..++..|+..|. +++++|.+.-....|+++
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~~v~~l~~g   42 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKLNKG   42 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHHHHHHhhcC
Confidence            79999999999999999999997 488999776554555543

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.71  E-value=0.47  Score=46.25  Aligned_cols=77  Identities=14%  Similarity=0.316  Sum_probs=54.6

Q ss_pred             HHhCCcEEEECCcH-HHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVGAGG-IGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG~Gg-iG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .|++++|+|||.|. +|..+++.|...|. .+++++..+                                         
T Consensus       155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t-----------------------------------------  192 (286)
T PRK14175        155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRS-----------------------------------------  192 (286)
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCc-----------------------------------------
Confidence            47899999999998 99999999998885 577776321                                         


Q ss_pred             ccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEeccc
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT  137 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~  137 (410)
                       .      ...+..+++|+||.|+....   .+..--.+.+.-+||.|+.
T Consensus       193 -~------~l~~~~~~ADIVIsAvg~p~---~i~~~~vk~gavVIDvGi~  232 (286)
T PRK14175        193 -K------DMASYLKDADVIVSAVGKPG---LVTKDVVKEGAVIIDVGNT  232 (286)
T ss_pred             -h------hHHHHHhhCCEEEECCCCCc---ccCHHHcCCCcEEEEcCCC
Confidence             0      01356789999999987543   2222224556677888764

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=91.70  E-value=1.1  Score=45.05  Aligned_cols=33  Identities=24%  Similarity=0.349  Sum_probs=28.0

Q ss_pred             hCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           11 KGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        11 ~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .+++|+|.|+ |-||+.+++.|...|. +++.+|.
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r   53 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGH-YIIASDW   53 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEe
Confidence            4688999986 9999999999999885 5777774

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=91.70  E-value=0.45  Score=46.56  Aligned_cols=31  Identities=23%  Similarity=0.449  Sum_probs=27.2

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +|.+||+|.+|..++++|+..|.. +++.|.+
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~~-v~v~dr~   32 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGHE-VVGYDVN   32 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCE-EEEEECC
Confidence            699999999999999999999964 7777754

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=91.68  E-value=0.39  Score=53.04  Aligned_cols=163  Identities=12%  Similarity=0.106  Sum_probs=84.9

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCc---cccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLN---RQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~---Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      ++|.|||+|-+|+.++..++..|+. ++|+|.+.=......   +..+=..-.-|+...+...+.+.+      |+..  
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~-V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~------i~~~--  406 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLK-TVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSN------LTPT--  406 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCc-EEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhC------eEEe--
Confidence            5799999999999999999999976 888886542211100   000000000111111111111111      1111  


Q ss_pred             CCCCCcchHhhhccCcEEEEcc-CChHHHHHHHHHHHHCCC--cEEEecccCccc-eEEEEeCCCCccccccCCCCCCCC
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGFLG-QVTVHVKGKTECYECQPKPAPKTY  165 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~-Dn~~~r~~i~~~c~~~~~--p~i~~g~~G~~G-~v~~~~~~~t~c~~C~~~~~~~~~  165 (410)
                          ..+  +-++++|+||.|+ .+.+.+..+-+.....-.  -++.+.|.+..- .+........-+..-++-.++..-
T Consensus       407 ----~~~--~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m  480 (737)
T TIGR02441       407 ----LDY--SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKM  480 (737)
T ss_pred             ----CCH--HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccC
Confidence                111  2368999999985 667777666555544433  244444443221 000001111112222333344556


Q ss_pred             CceeeccCCCcchHHHHHHHHHHHHH
Q 015243          166 PVCTITSTPSKFVHCIVWAKDLLFAK  191 (410)
Q Consensus       166 p~cti~~~p~~~~h~i~~a~~~~f~~  191 (410)
                      |...+...+.+....+..+.+ +...
T Consensus       481 ~LvEvv~g~~Ts~~~~~~~~~-~~~~  505 (737)
T TIGR02441       481 QLLEIITHDGTSKDTLASAVA-VGLK  505 (737)
T ss_pred             ceEEEeCCCCCCHHHHHHHHH-HHHH
Confidence            778888878888888888887 3443

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=91.66  E-value=0.72  Score=45.26  Aligned_cols=34  Identities=24%  Similarity=0.374  Sum_probs=28.0

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +.+++++|.| .||||.++++.|+..|. ++.+++.
T Consensus         4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r   38 (322)
T PRK07453          4 DAKGTVIITGASSGVGLYAAKALAKRGW-HVIMACR   38 (322)
T ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEEC
Confidence            3567899998 68999999999999994 5777764

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=91.62  E-value=0.61  Score=46.39  Aligned_cols=92  Identities=18%  Similarity=0.189  Sum_probs=57.1

Q ss_pred             HHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         8 ~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      ..+.+++|.++|.|+||.++++.|-..| ..|.- .                ...-..++  .+.+    .+..      
T Consensus       158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y-~----------------~r~~~~~~--~~~~----~~~~------  207 (336)
T KOG0069|consen  158 YDLEGKTVGILGLGRIGKAIAKRLKPFG-CVILY-H----------------SRTQLPPE--EAYE----YYAE------  207 (336)
T ss_pred             ccccCCEEEEecCcHHHHHHHHhhhhcc-ceeee-e----------------cccCCchh--hHHH----hccc------
Confidence            4678999999999999999999999865 32322 1                11111111  1111    1111      


Q ss_pred             ccCCCCCcchHhhhccCcEEEE-ccCChHHHHHHHHHHHHC---CCcEEEec
Q 015243           88 HANVKDPKFNVEFFKQFNVVLN-GLDNLDARRHVNRLCLAA---DVPLVESG  135 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~-a~Dn~~~r~~i~~~c~~~---~~p~i~~g  135 (410)
                        .    ...++++.++|+|+. +-.+.+++..+|+.....   +.-+++.+
T Consensus       208 --~----~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~a  253 (336)
T KOG0069|consen  208 --F----VDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTA  253 (336)
T ss_pred             --c----cCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEecc
Confidence              1    123578899998766 557888999998865543   33455544

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.60  E-value=0.95  Score=42.01  Aligned_cols=36  Identities=25%  Similarity=0.537  Sum_probs=30.1

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .+.+++++|.| .|++|..+++.|+..|. ++.+++.+
T Consensus         4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~   40 (239)
T PRK07666          4 SLQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLART   40 (239)
T ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            35678899998 67999999999999998 68888744

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=91.59  E-value=0.5  Score=53.33  Aligned_cols=40  Identities=28%  Similarity=0.312  Sum_probs=34.7

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCccc
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSN   51 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sN   51 (410)
                      ..+||+|||+|.-|-++|..|++.|.. ++++|...++.-+
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~Gh~-Vtv~E~~~i~gl~  421 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSGHN-VTAIDGLKITLLP  421 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCe-EEEEccccccccc
Confidence            578999999999999999999999976 9999987665444

>PRK06172 short chain dehydrogenase; Provisional

Probab=91.54  E-value=0.74  Score=43.15  Aligned_cols=34  Identities=29%  Similarity=0.446  Sum_probs=28.6

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      |.+++++|.| .|++|.++++.|+..|. ++.+++.
T Consensus         5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r   39 (253)
T PRK06172          5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADR   39 (253)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence            5678999998 58999999999999996 4777663

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=91.53  E-value=1.1  Score=44.85  Aligned_cols=102  Identities=19%  Similarity=0.209  Sum_probs=55.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      ..+|.|+|+|++|+.++..|+..|  ++++...+.-....+++.-. .....+..         .++.+.  +..     
T Consensus         7 ~mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~~~~~~~i~~~~~-~~~~l~~~---------~~l~~~--i~~-----   67 (341)
T PRK12439          7 EPKVVVLGGGSWGTTVASICARRG--PTLQWVRSAETADDINDNHR-NSRYLGND---------VVLSDT--LRA-----   67 (341)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC--CEEEEeCCHHHHHHHHhcCC-CcccCCCC---------cccCCC--eEE-----
Confidence            368999999999999999999998  45555433221111211100 00011100         001111  111     


Q ss_pred             CCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHC--CCcEEEe
Q 015243           92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA--DVPLVES  134 (410)
Q Consensus        92 ~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~--~~p~i~~  134 (410)
                      +. + ..+-+.++|+||.++-....+..+.++....  +.+++..
T Consensus        68 t~-d-~~~a~~~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl  110 (341)
T PRK12439         68 TT-D-FAEAANCADVVVMGVPSHGFRGVLTELAKELRPWVPVVSL  110 (341)
T ss_pred             EC-C-HHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEE
Confidence            11 1 1234678999999998877777777765432  3345543

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=91.52  E-value=0.91  Score=42.57  Aligned_cols=34  Identities=35%  Similarity=0.614  Sum_probs=28.8

Q ss_pred             HhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +++++++|.|+ |++|..+++.|+..|.. +.+++.
T Consensus         5 ~~~~~vlItGasg~iG~~la~~l~~~G~~-v~~~~r   39 (262)
T PRK13394          5 LNGKTAVVTGAASGIGKEIALELARAGAA-VAIADL   39 (262)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeC
Confidence            56788999985 99999999999999974 777664

>PRK12829 short chain dehydrogenase; Provisional

Probab=91.52  E-value=0.59  Score=43.95  Aligned_cols=36  Identities=36%  Similarity=0.722  Sum_probs=31.0

Q ss_pred             HHHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243            7 LEAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus         7 q~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      ...+++++++|.| .|++|..+++.|+..|.. +.+++
T Consensus         6 ~~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~-V~~~~   42 (264)
T PRK12829          6 LKPLDGLRVLVTGGASGIGRAIAEAFAEAGAR-VHVCD   42 (264)
T ss_pred             hhccCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEe
Confidence            3457889999998 599999999999999985 78877

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=91.52  E-value=0.66  Score=47.06  Aligned_cols=32  Identities=41%  Similarity=0.746  Sum_probs=28.3

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .+|+||| .|.+|..+++.|...|.. ++++|.+
T Consensus        99 ~~I~IiGG~GlmG~slA~~l~~~G~~-V~~~d~~  131 (374)
T PRK11199         99 RPVVIVGGKGQLGRLFAKMLTLSGYQ-VRILEQD  131 (374)
T ss_pred             ceEEEEcCCChhhHHHHHHHHHCCCe-EEEeCCC
Confidence            6899998 999999999999999954 8888853

>PRK05876 short chain dehydrogenase; Provisional

Probab=91.50  E-value=0.8  Score=43.97  Aligned_cols=34  Identities=26%  Similarity=0.419  Sum_probs=28.8

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +.+++++|.| .||||.++++.|+..|.. +.++|.
T Consensus         4 ~~~k~vlVTGas~gIG~ala~~La~~G~~-Vv~~~r   38 (275)
T PRK05876          4 FPGRGAVITGGASGIGLATGTEFARRGAR-VVLGDV   38 (275)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            6678899997 789999999999999974 777763

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.49  E-value=0.86  Score=47.92  Aligned_cols=35  Identities=26%  Similarity=0.457  Sum_probs=30.6

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +++++|+|+|.|+.|..+++.|...|. +++..|..
T Consensus         5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~   39 (498)
T PRK02006          5 LQGPMVLVLGLGESGLAMARWCARHGA-RLRVADTR   39 (498)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcCC
Confidence            467899999999999999999999997 58888843

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=91.39  E-value=1.8  Score=40.85  Aligned_cols=37  Identities=30%  Similarity=0.550  Sum_probs=29.5

Q ss_pred             HHHHHHHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEE
Q 015243            4 ERQLEAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHI   41 (410)
Q Consensus         4 ~e~q~~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~l   41 (410)
                      +|.-+....++|+|+|+ |++|..+++.|+..|.. ++.
T Consensus         9 ~~~~~~~~~~~ilItGasG~iG~~l~~~L~~~g~~-V~~   46 (251)
T PLN00141          9 EEDAENVKTKTVFVAGATGRTGKRIVEQLLAKGFA-VKA   46 (251)
T ss_pred             ccccccccCCeEEEECCCcHHHHHHHHHHHhCCCE-EEE
Confidence            44455677889999995 99999999999998864 444

>PLN02852 ferredoxin-NADP+ reductase

Probab=91.38  E-value=1.1  Score=47.07  Aligned_cols=97  Identities=16%  Similarity=0.120  Sum_probs=54.1

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHH--hCCCcEEEEeCCccCcccCccccCCCCCCCCchHHH--HHHHHHHhhCCCCeEEE
Q 015243           11 KGAKVLMVGAGGIGCELLKTLAL--SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAK--VARDAVLKFRPQMSITA   86 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~--~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~--~a~~~l~~~np~v~i~~   86 (410)
                      ..++|+|||+|.-|.+.|..|++  .|. +++|+|.... +--+.|.-. .. +--..|..  -..+.+..  +.+++..
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p~-pgGlvr~gv-aP-~~~~~k~v~~~~~~~~~~--~~v~~~~   98 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLPT-PFGLVRSGV-AP-DHPETKNVTNQFSRVATD--DRVSFFG   98 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCCC-CcceEeecc-CC-CcchhHHHHHHHHHHHHH--CCeEEEc
Confidence            35789999999999999999997  454 6999996652 334544321 11 21222321  11112222  3343221


Q ss_pred             EccCCCCCcchHhhhccCcEEEEccCCh
Q 015243           87 HHANVKDPKFNVEFFKQFNVVLNGLDNL  114 (410)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~DvVi~a~Dn~  114 (410)
                       .-.+......+++...||.||.|+...
T Consensus        99 -nv~vg~dvtl~~L~~~yDaVIlAtGa~  125 (491)
T PLN02852         99 -NVTLGRDVSLSELRDLYHVVVLAYGAE  125 (491)
T ss_pred             -CEEECccccHHHHhhhCCEEEEecCCC
Confidence             111111212235557899999987653

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=91.33  E-value=1.6  Score=45.30  Aligned_cols=34  Identities=26%  Similarity=0.406  Sum_probs=30.4

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ...+|+|||+|..|.+.+..|++.|. +++|+|..
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~  165 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGH-SVTVFEAL  165 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            45789999999999999999999997 59999864

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=91.32  E-value=1.8  Score=47.17  Aligned_cols=108  Identities=18%  Similarity=0.287  Sum_probs=62.0

Q ss_pred             HHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEE
Q 015243            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (410)
Q Consensus         8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~   86 (410)
                      ..-++++|+|.| +|-+|+.+++.|...|=-+++.+|...-.   ..                   ..+ . ++  +++.
T Consensus       311 ~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~---~~-------------------~~~-~-~~--~~~~  364 (660)
T PRK08125        311 SAKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDA---IS-------------------RFL-G-HP--RFHF  364 (660)
T ss_pred             hhhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchh---hh-------------------hhc-C-CC--ceEE
Confidence            345678899998 69999999999998642357777643210   00                   000 0 11  2334


Q ss_pred             EccCCCCCc-chHhhhccCcEEEEccC-----------------ChHHHHHHHHHHHHCCCcEEEecccCccc
Q 015243           87 HHANVKDPK-FNVEFFKQFNVVLNGLD-----------------NLDARRHVNRLCLAADVPLVESGTTGFLG  141 (410)
Q Consensus        87 ~~~~i~~~~-~~~~~~~~~DvVi~a~D-----------------n~~~r~~i~~~c~~~~~p~i~~g~~G~~G  141 (410)
                      +..++++.. .....++++|+||.+..                 |...-..+-+.|.++++.+|..++...+|
T Consensus       365 ~~gDl~d~~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~~~~V~~SS~~vyg  437 (660)
T PRK08125        365 VEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNKRIIFPSTSEVYG  437 (660)
T ss_pred             EeccccCcHHHHHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcCCeEEEEcchhhcC
Confidence            445554321 11234566777775321                 12223445567788888888887765555

>PLN02214 cinnamoyl-CoA reductase

Probab=91.29  E-value=2.4  Score=42.08  Aligned_cols=107  Identities=16%  Similarity=0.156  Sum_probs=61.7

Q ss_pred             HhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      +++++|+|.|+ |.+|+.+++.|+..|.. ++.++.+.   ++.              +... .+.+....  -+++...
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~-V~~~~r~~---~~~--------------~~~~-~~~~~~~~--~~~~~~~   66 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGYT-VKGTVRNP---DDP--------------KNTH-LRELEGGK--ERLILCK   66 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEeCCc---hhh--------------hHHH-HHHhhCCC--CcEEEEe
Confidence            56789999996 99999999999999864 55554221   000              0010 11111111  1355555


Q ss_pred             cCCCCCcchHhhhccCcEEEEccC----C--------hHHHHHHHHHHHHCCC-cEEEeccc
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLD----N--------LDARRHVNRLCLAADV-PLVESGTT  137 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~D----n--------~~~r~~i~~~c~~~~~-p~i~~g~~  137 (410)
                      .++++...-...++++|+||.+..    +        ...-..+-+.|.+.++ .+|..++.
T Consensus        67 ~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS~  128 (342)
T PLN02214         67 ADLQDYEALKAAIDGCDGVFHTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSSI  128 (342)
T ss_pred             cCcCChHHHHHHHhcCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence            666544333456778899988642    1        1223445556777775 47766654

>CHL00194 ycf39 Ycf39; Provisional

Probab=91.29  E-value=1.3  Score=43.34  Aligned_cols=97  Identities=13%  Similarity=0.215  Sum_probs=58.2

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      ++|+|.| .|-+|+.+++.|...|. +++.++.+.                   .++    ..+..  +  .++....++
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~-------------------~~~----~~l~~--~--~v~~v~~Dl   52 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNL-------------------RKA----SFLKE--W--GAELVYGDL   52 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcCh-------------------HHh----hhHhh--c--CCEEEECCC
Confidence            3799999 59999999999999986 466654321                   011    11111  1  244455566


Q ss_pred             CCCcchHhhhccCcEEEEccCC------------hHHHHHHHHHHHHCCC-cEEEeccc
Q 015243           92 KDPKFNVEFFKQFNVVLNGLDN------------LDARRHVNRLCLAADV-PLVESGTT  137 (410)
Q Consensus        92 ~~~~~~~~~~~~~DvVi~a~Dn------------~~~r~~i~~~c~~~~~-p~i~~g~~  137 (410)
                      ++...-...++++|+||.+...            ...-..+-+.|...++ .+|..++.
T Consensus        53 ~d~~~l~~al~g~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~  111 (317)
T CHL00194         53 SLPETLPPSFKGVTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSIL  111 (317)
T ss_pred             CCHHHHHHHHCCCCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccc
Confidence            5443334567888999886431            1122345567777776 56665554

>TIGR00065 ftsZ cell division protein FtsZ

Probab=91.28  E-value=1.1  Score=45.14  Aligned_cols=44  Identities=20%  Similarity=0.379  Sum_probs=34.6

Q ss_pred             HHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCc--EEEEeCCccC
Q 015243            5 RQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQD--IHIIDMDTIE   48 (410)
Q Consensus         5 e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~--i~liD~D~Ve   48 (410)
                      +.|+--.+.+|.|||+||-||.++..|.+.|+..  +..+|.|.-.
T Consensus        10 ~~~~~~~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~~~   55 (349)
T TIGR00065        10 ELIQPSNKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQH   55 (349)
T ss_pred             hhcCcccCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCHHH
Confidence            3444445689999999999999999999999864  4557887633

This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=91.27  E-value=2.3  Score=41.76  Aligned_cols=30  Identities=33%  Similarity=0.556  Sum_probs=25.2

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      ++|+|.| .|.+|..+++.|+..|.. ++++|
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~   31 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQNGHD-VVILD   31 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCCe-EEEEe
Confidence            3799999 599999999999999864 66665

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=91.23  E-value=1  Score=44.53  Aligned_cols=34  Identities=29%  Similarity=0.622  Sum_probs=30.1

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ...+|+|.|+|++|...+..+..+|..++.++|.
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~  202 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV  202 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC
Confidence            4679999999999999999888999988888773

>PRK07326 short chain dehydrogenase; Provisional

Probab=91.21  E-value=0.92  Score=41.92  Aligned_cols=33  Identities=30%  Similarity=0.646  Sum_probs=27.5

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      +.+.+|+|.| .|++|..+++.|+..|.. +.+++
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~~~g~~-V~~~~   37 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALLAEGYK-VAITA   37 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEee
Confidence            4467899998 589999999999998875 77765

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=91.17  E-value=1.5  Score=44.56  Aligned_cols=33  Identities=30%  Similarity=0.519  Sum_probs=26.7

Q ss_pred             hCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ..++|+|.| .|.+|..+++.|...|.. +++++.
T Consensus        59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~~-V~~l~R   92 (390)
T PLN02657         59 KDVTVLVVGATGYIGKFVVRELVRRGYN-VVAVAR   92 (390)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEEe
Confidence            356899998 599999999999999864 666653

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=91.13  E-value=1.1  Score=43.61  Aligned_cols=31  Identities=29%  Similarity=0.582  Sum_probs=26.5

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +|.|||+|.+|+.++.+|+..|. +++++|.+
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~   31 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIG   31 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCC
Confidence            58999999999999999999996 47777643

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK07024 short chain dehydrogenase; Provisional

Probab=91.13  E-value=0.85  Score=43.01  Aligned_cols=33  Identities=27%  Similarity=0.469  Sum_probs=27.8

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .++|+|.| .|+||.++++.|+..|. ++.++|.+
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~   35 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARR   35 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            46788887 78999999999999997 68887743

>PLN02650 dihydroflavonol-4-reductase

Probab=91.13  E-value=2.8  Score=41.59  Aligned_cols=33  Identities=24%  Similarity=0.334  Sum_probs=26.7

Q ss_pred             hCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .+++|+|.| .|.||+.+++.|+..|.. +++++.
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~-V~~~~r   37 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRLLERGYT-VRATVR   37 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHCCCE-EEEEEc
Confidence            357899998 599999999999999874 655553

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=91.13  E-value=1.5  Score=43.30  Aligned_cols=31  Identities=26%  Similarity=0.381  Sum_probs=25.6

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ++|+|.| +|.||+.+++.|...|. +++++|.
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r   32 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGY-EVHGLIR   32 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCC-EEEEEec
Confidence            4789998 58899999999999997 4676664

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PRK13018 cell division protein FtsZ; Provisional

Probab=91.07  E-value=1.4  Score=44.62  Aligned_cols=38  Identities=26%  Similarity=0.489  Sum_probs=32.7

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCC--cEEEEeCCcc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMDTI   47 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~--~i~liD~D~V   47 (410)
                      ..+.+|.|||+||-||.++.+|...|+.  .+..+|.|.-
T Consensus        26 ~~~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~q   65 (378)
T PRK13018         26 FGNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDAQ   65 (378)
T ss_pred             cCCCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHH
Confidence            3568999999999999999999999976  5677888873

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=91.00  E-value=1.1  Score=44.99  Aligned_cols=98  Identities=26%  Similarity=0.310  Sum_probs=57.3

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCcEE-EEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           13 AKVLMVGA-GGIGCELLKTLALSGFQDIH-IIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        13 ~~VlvvG~-GgiG~ev~knLa~~Gv~~i~-liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      .||+|+|+ |.+|.++++.|...-.-++. +++.+.               ..|+.        +.+..|.+.... ...
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~---------------sagk~--------~~~~~~~l~~~~-~~~   56 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE---------------SAGKP--------VSEVHPHLRGLV-DLN   56 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch---------------hcCCC--------hHHhCccccccC-Cce
Confidence            47999998 99999999999965333344 545331               12221        111123221100 001


Q ss_pred             CCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecc
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT  136 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~  136 (410)
                      +.+.. ..++.+++|+|+.|+.+..++.++..+ ...++.+|+.+.
T Consensus        57 ~~~~~-~~~~~~~~DvVf~alP~~~s~~~~~~~-~~~G~~VIDlS~  100 (346)
T TIGR01850        57 LEPID-EEEIAEDADVVFLALPHGVSAELAPEL-LAAGVKVIDLSA  100 (346)
T ss_pred             eecCC-HHHhhcCCCEEEECCCchHHHHHHHHH-HhCCCEEEeCCh
Confidence            11111 134446899999999987777666655 457899998654

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=90.97  E-value=1.7  Score=44.93  Aligned_cols=103  Identities=17%  Similarity=0.223  Sum_probs=60.0

Q ss_pred             hCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      +.+||+|.| .|-||+.+++.|...|. +++.+|.+...     ++          .+.   . .+. -++  .++....
T Consensus       119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr~~~~-----~~----------~~~---~-~~~-~~~--~~~~~~~  175 (436)
T PLN02166        119 KRLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNFFTG-----RK----------ENL---V-HLF-GNP--RFELIRH  175 (436)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCCCc-----cH----------hHh---h-hhc-cCC--ceEEEEC
Confidence            346899998 69999999999999986 47777743211     00          000   0 000 012  2333333


Q ss_pred             CCCCCcchHhhhccCcEEEEccC-----------------ChHHHHHHHHHHHHCCCcEEEecccCccc
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLD-----------------NLDARRHVNRLCLAADVPLVESGTTGFLG  141 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~D-----------------n~~~r~~i~~~c~~~~~p~i~~g~~G~~G  141 (410)
                      ++.+     ..+.++|+||.+..                 |...-..+-+.|.++++.+|..++.+.+|
T Consensus       176 Di~~-----~~~~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS~~VYg  239 (436)
T PLN02166        176 DVVE-----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSEVYG  239 (436)
T ss_pred             cccc-----ccccCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECcHHHhC
Confidence            3322     22457898888531                 11112345567888888899888776555

>PRK06949 short chain dehydrogenase; Provisional

Probab=90.97  E-value=1.3  Score=41.52  Aligned_cols=34  Identities=24%  Similarity=0.531  Sum_probs=28.7

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +.+++|+|.| .|++|..+++.|+..|. ++++++.
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r   41 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASR   41 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            5678999998 59999999999999997 4777653

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=90.92  E-value=1  Score=43.22  Aligned_cols=32  Identities=28%  Similarity=0.504  Sum_probs=27.4

Q ss_pred             EEEECC-cHHHHHHHHHHHHhC--C-CcEEEEeCCc
Q 015243           15 VLMVGA-GGIGCELLKTLALSG--F-QDIHIIDMDT   46 (410)
Q Consensus        15 VlvvG~-GgiG~ev~knLa~~G--v-~~i~liD~D~   46 (410)
                      |.|||+ |.+|..++..|+..|  . .++.|+|.+.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~   36 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDE   36 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCc
Confidence            579999 999999999999998  4 5899998443

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=90.90  E-value=0.33  Score=50.05  Aligned_cols=34  Identities=29%  Similarity=0.378  Sum_probs=30.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      ..+|+|||+|-+||++|-.|++.|+. ++|+|+..
T Consensus         2 ~~dVvVIGGGlAGleAAlaLAr~Gl~-V~LiE~rp   35 (436)
T PRK05335          2 MKPVNVIGAGLAGSEAAWQLAKRGVP-VELYEMRP   35 (436)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCc-EEEEEccC
Confidence            46899999999999999999999976 89998543

>PRK07035 short chain dehydrogenase; Provisional

Probab=90.89  E-value=1.5  Score=41.09  Aligned_cols=36  Identities=28%  Similarity=0.446  Sum_probs=30.4

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .|.+++|+|.| .|+||.++++.|+..|. ++.++|.+
T Consensus         5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~   41 (252)
T PRK07035          5 DLTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRK   41 (252)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            36778899998 78999999999999997 68887743

>PLN02572 UDP-sulfoquinovose synthase

Probab=90.88  E-value=2.8  Score=43.39  Aligned_cols=35  Identities=29%  Similarity=0.503  Sum_probs=30.3

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .+++++|+|.| +|.||+.+++.|+..|. +++++|.
T Consensus        44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~-~V~~~d~   79 (442)
T PLN02572         44 SSKKKKVMVIGGDGYCGWATALHLSKRGY-EVAIVDN   79 (442)
T ss_pred             cccCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEec
Confidence            56788999998 69999999999999996 5888884

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=90.86  E-value=3.2  Score=34.10  Aligned_cols=86  Identities=20%  Similarity=0.334  Sum_probs=53.4

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCC-c-EEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQ-D-IHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~-~-i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      ||.|||+|.+|...+..+...+-+ + ..++|.+                   ..+++.+++   +.  ++.  .+. + 
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~-------------------~~~~~~~~~---~~--~~~--~~~-~-   53 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPD-------------------PERAEAFAE---KY--GIP--VYT-D-   53 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSS-------------------HHHHHHHHH---HT--TSE--EES-S-
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCC-------------------HHHHHHHHH---Hh--ccc--chh-H-
Confidence            799999999999999999988422 2 2344432                   223333322   22  222  221 1 


Q ss_pred             CCCcchHhhhc--cCcEEEEccCChHHHHHHHHHHHHCCCcEEE
Q 015243           92 KDPKFNVEFFK--QFNVVLNGLDNLDARRHVNRLCLAADVPLVE  133 (410)
Q Consensus        92 ~~~~~~~~~~~--~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~  133 (410)
                           .+++++  +.|+|+.++.+ .....+-..|.+.|++++-
T Consensus        54 -----~~~ll~~~~~D~V~I~tp~-~~h~~~~~~~l~~g~~v~~   91 (120)
T PF01408_consen   54 -----LEELLADEDVDAVIIATPP-SSHAEIAKKALEAGKHVLV   91 (120)
T ss_dssp             -----HHHHHHHTTESEEEEESSG-GGHHHHHHHHHHTTSEEEE
T ss_pred             -----HHHHHHhhcCCEEEEecCC-cchHHHHHHHHHcCCEEEE
Confidence                 234444  78999999865 5566677778888886553

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK06545 prephenate dehydrogenase; Validated

Probab=90.83  E-value=1.5  Score=44.17  Aligned_cols=32  Identities=41%  Similarity=0.583  Sum_probs=27.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .+|.|||+|.+|..+++.|...|. .+.++|.|
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~-~v~i~~~~   32 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGP-DVFIIGYD   32 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCC-CeEEEEeC
Confidence            479999999999999999999997 46677643

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=90.76  E-value=1.4  Score=43.71  Aligned_cols=95  Identities=17%  Similarity=0.293  Sum_probs=61.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHH-HHHHHHHhhCCCCeEEEEccC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAK-VARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~-~a~~~l~~~np~v~i~~~~~~   90 (410)
                      ..+|.|+|+||+|-....-....|.++|.-+|...- .-.+.++|  ...|.=.+|-. -+.+.+.++.+          
T Consensus       186 G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~-Kl~~A~~f--GAT~~vn~~~~~~vv~~i~~~T~----------  252 (366)
T COG1062         186 GDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPE-KLELAKKF--GATHFVNPKEVDDVVEAIVELTD----------  252 (366)
T ss_pred             CCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHH-HHHHHHhc--CCceeecchhhhhHHHHHHHhcC----------
Confidence            568999999999999999999999999999985431 22233332  22222222211 13333333321          


Q ss_pred             CCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCc
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVP  130 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p  130 (410)
                                 ...|.+|+++.|.+....--+.|++.+.-
T Consensus       253 -----------gG~d~~~e~~G~~~~~~~al~~~~~~G~~  281 (366)
T COG1062         253 -----------GGADYAFECVGNVEVMRQALEATHRGGTS  281 (366)
T ss_pred             -----------CCCCEEEEccCCHHHHHHHHHHHhcCCeE
Confidence                       17899999999998776666677665543

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=90.74  E-value=1.4  Score=41.14  Aligned_cols=33  Identities=42%  Similarity=0.640  Sum_probs=27.7

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      +++++|+|.| .|++|.++++.|+..|. ++.++|
T Consensus         2 ~~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~   35 (258)
T PRK12429          2 LKGKVALVTGAASGIGLEIALALAKEGA-KVVIAD   35 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEe
Confidence            4568899998 69999999999999987 466665

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=90.74  E-value=2.9  Score=41.52  Aligned_cols=32  Identities=28%  Similarity=0.401  Sum_probs=26.5

Q ss_pred             hCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      ++++|+|.| +|.||+.+++.|+..|.. +.+++
T Consensus         9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~~-V~~~~   41 (353)
T PLN02896          9 ATGTYCVTGATGYIGSWLVKLLLQRGYT-VHATL   41 (353)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEe
Confidence            467999998 689999999999999864 55554

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=90.71  E-value=1.8  Score=40.73  Aligned_cols=37  Identities=27%  Similarity=0.482  Sum_probs=32.8

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .|+.+||+|.|.|.+|..+++.|...|..-+.+.|.+
T Consensus        28 ~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~   64 (227)
T cd01076          28 GLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD   64 (227)
T ss_pred             CccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            4789999999999999999999999998866688754

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=90.70  E-value=1.6  Score=40.95  Aligned_cols=30  Identities=40%  Similarity=0.615  Sum_probs=21.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhC---CCcEEEEe
Q 015243           13 AKVLMVGAGGIGCELLKTLALSG---FQDIHIID   43 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~G---v~~i~liD   43 (410)
                      .+|.+||||+||..+++.+- -|   +.-+.+.|
T Consensus         1 l~vgiVGcGaIG~~l~e~v~-~~~~~~e~v~v~D   33 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVR-DGRVDFELVAVYD   33 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHh-cCCcceeEEEEec
Confidence            36899999999999887654 44   44444444

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=90.56  E-value=1.6  Score=45.17  Aligned_cols=109  Identities=18%  Similarity=0.220  Sum_probs=74.7

Q ss_pred             CcEEEECCcHH-HHHHHHHHHH----hCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243           13 AKVLMVGAGGI-GCELLKTLAL----SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus        13 ~~VlvvG~Ggi-G~ev~knLa~----~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .||.|||+|+. +-++++.|+.    ..+++|.|+|-|.   ..|.+            =...+++.+++..++++++..
T Consensus         1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~---~Rl~~------------v~~l~~~~~~~~g~~~~v~~t   65 (425)
T cd05197           1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDE---ERLDI------------ILTIAKRYVEEVGADIKFEKT   65 (425)
T ss_pred             CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCH---HHHHH------------HHHHHHHHHHhhCCCeEEEEe
Confidence            37999999985 4467777774    4568999999553   22211            123455556677788888877


Q ss_pred             ccCCCCCcchHhhhccCcEEEEc--cCChHHHHHHHHHHHHCCCcEEEecccCccceEEE
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNG--LDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTV  145 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a--~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~  145 (410)
                      .+.       .+-++++|+||++  ....++|..--+...++|+-=  ..|.|.+|...-
T Consensus        66 tD~-------~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~g--qeT~G~GG~~~a  116 (425)
T cd05197          66 MDL-------EDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIG--QETVGPGGTFSG  116 (425)
T ss_pred             CCH-------HHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCccc--ccccCcchhhhh
Confidence            543       3557899999997  466788887778889988743  567777775443

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PRK05872 short chain dehydrogenase; Provisional

Probab=90.54  E-value=1.4  Score=42.77  Aligned_cols=35  Identities=34%  Similarity=0.680  Sum_probs=29.5

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .+.+++|+|.| .||||.++++.|+..|. ++.+++.
T Consensus         6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r   41 (296)
T PRK05872          6 SLAGKVVVVTGAARGIGAELARRLHARGA-KLALVDL   41 (296)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            36678999998 58999999999999997 5777764

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.52  E-value=1.5  Score=42.75  Aligned_cols=88  Identities=23%  Similarity=0.330  Sum_probs=60.9

Q ss_pred             CHHHHHHHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            3 SERQLEAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         3 g~e~q~~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      +....+++.++-|+|-|| .|||-++|+.|+..|.+-+.++=               +     ..+-+.+++.+++.-|.
T Consensus         3 ~~~~~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar---------------~-----~rrl~~v~~~l~~~~~~   62 (282)
T KOG1205|consen    3 GNLFMERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVAR---------------R-----ARRLERVAEELRKLGSL   62 (282)
T ss_pred             ccccHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeeh---------------h-----hhhHHHHHHHHHHhCCc
Confidence            455678999999999995 69999999999999988554431               1     12345555666665544


Q ss_pred             CeEEEEccCCCCCcchHh-------hhccCcEEEEc
Q 015243           82 MSITAHHANVKDPKFNVE-------FFKQFNVVLNG  110 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~-------~~~~~DvVi~a  110 (410)
                      -++.....++++......       -+.+.|+.|+.
T Consensus        63 ~~v~~~~~Dvs~~~~~~~~~~~~~~~fg~vDvLVNN   98 (282)
T KOG1205|consen   63 EKVLVLQLDVSDEESVKKFVEWAIRHFGRVDVLVNN   98 (282)
T ss_pred             CccEEEeCccCCHHHHHHHHHHHHHhcCCCCEEEec
Confidence            367788888865543333       35677888873

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=90.52  E-value=1.2  Score=43.44  Aligned_cols=32  Identities=22%  Similarity=0.578  Sum_probs=27.7

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .+|.+||+|.+|..++.+|+..|. .+++.|.+
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~   33 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGH-QLQVFDVN   33 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence            379999999999999999999996 57887743

>PRK12744 short chain dehydrogenase; Provisional

Probab=90.49  E-value=1.4  Score=41.47  Aligned_cols=33  Identities=33%  Similarity=0.566  Sum_probs=27.1

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHI   41 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~l   41 (410)
                      .|++++++|.| .|+||.++++.|+..|...+.+
T Consensus         5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i   38 (257)
T PRK12744          5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAI   38 (257)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEE
Confidence            35678999997 7899999999999999864433

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=90.49  E-value=0.89  Score=46.27  Aligned_cols=99  Identities=19%  Similarity=0.280  Sum_probs=60.9

Q ss_pred             hCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           11 KGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        11 ~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      +.+||+|+|+ |.+|.|+++.|......+++.+-.               ....|+.        +...+|.+.-... .
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s---------------~~saG~~--------i~~~~~~l~~~~~-~   92 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTA---------------DRKAGQS--------FGSVFPHLITQDL-P   92 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEC---------------hhhcCCC--------chhhCccccCccc-c
Confidence            4569999996 899999999999886566777532               2223322        1112222111000 0


Q ss_pred             CCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEeccc
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT  137 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~  137 (410)
                      .+.  .....-++++|+|+.|+.+..++.++..+  ..+.++|+.+..
T Consensus        93 ~~~--~~~~~~~~~~DvVf~Alp~~~s~~i~~~~--~~g~~VIDlSs~  136 (381)
T PLN02968         93 NLV--AVKDADFSDVDAVFCCLPHGTTQEIIKAL--PKDLKIVDLSAD  136 (381)
T ss_pred             cee--cCCHHHhcCCCEEEEcCCHHHHHHHHHHH--hCCCEEEEcCch
Confidence            011  11122248899999999988888888775  467889987654

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=90.46  E-value=1.6  Score=45.60  Aligned_cols=34  Identities=32%  Similarity=0.537  Sum_probs=30.2

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .+.+|+|||+|..|.+.+..|++.|.. ++++|..
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~-V~i~e~~  173 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQ-VVVFDRH  173 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Confidence            457899999999999999999999986 8888754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=90.37  E-value=0.37  Score=47.42  Aligned_cols=34  Identities=29%  Similarity=0.502  Sum_probs=29.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      +.+|+|+|+|++|+.++..|+..|. .+++++.+.
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~   38 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSD   38 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCC
Confidence            4689999999999999999999994 578876543

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=90.33  E-value=1.9  Score=41.74  Aligned_cols=90  Identities=17%  Similarity=0.132  Sum_probs=52.0

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHh--CCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALS--GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~--Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      ...||.|||+|.+|..++++|...  |+.-..+.|.+                   ..|++.+++   +.+ ....    
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~-------------------~~~a~~~a~---~~g-~~~~----   57 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRD-------------------PQRHADFIW---GLR-RPPP----   57 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCC-------------------HHHHHHHHH---hcC-CCcc----
Confidence            457899999999999999999864  33222233421                   123332222   221 0000    


Q ss_pred             cCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEE
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVE  133 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~  133 (410)
                        .+  . .++++.+.|+|+.|+.+... ..+...+.+.+++++.
T Consensus        58 --~~--~-~eell~~~D~Vvi~tp~~~h-~e~~~~aL~aGk~Vi~   96 (271)
T PRK13302         58 --VV--P-LDQLATHADIVVEAAPASVL-RAIVEPVLAAGKKAIV   96 (271)
T ss_pred             --cC--C-HHHHhcCCCEEEECCCcHHH-HHHHHHHHHcCCcEEE
Confidence              11  1 23456778999998865443 3444566677887774

>cd08230 glucose_DH Glucose dehydrogenase

Probab=90.32  E-value=1.5  Score=43.56  Aligned_cols=33  Identities=30%  Similarity=0.547  Sum_probs=28.7

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .+.+|+|.|+|++|...+..+..+|. +++++|.
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~  204 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNR  204 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence            57899999999999999998888998 5777774

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=90.31  E-value=1.5  Score=41.22  Aligned_cols=36  Identities=19%  Similarity=0.408  Sum_probs=30.4

Q ss_pred             HHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .++.+++++|.| .|+||..+++.|+..|. ++.++|.
T Consensus         8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r   44 (259)
T PRK08213          8 FDLSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSAR   44 (259)
T ss_pred             hCcCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence            356789999998 69999999999999997 5777763

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.26  E-value=1.6  Score=44.93  Aligned_cols=35  Identities=26%  Similarity=0.308  Sum_probs=30.5

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +++++|+|+|.|++|..+++.|+..|.. +++.|.+
T Consensus         3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~-V~~~d~~   37 (447)
T PRK02472          3 YQNKKVLVLGLAKSGYAAAKLLHKLGAN-VTVNDGK   37 (447)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCE-EEEEcCC
Confidence            5678999999999999999999999974 8887744

>PRK08265 short chain dehydrogenase; Provisional

Probab=90.22  E-value=0.79  Score=43.44  Aligned_cols=36  Identities=25%  Similarity=0.536  Sum_probs=30.4

Q ss_pred             HHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .+++++++|.|+ |+||.++++.|+..|. ++.++|.+
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~   39 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDID   39 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            367789999985 9999999999999997 68887744

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=90.21  E-value=0.94  Score=48.45  Aligned_cols=34  Identities=24%  Similarity=0.430  Sum_probs=30.5

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .+.+|+|||+|.+|-..+..|++.|.. ++++|..
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~-V~v~e~~  169 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGHA-VTIFEAG  169 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence            467999999999999999999999985 9999854

>PRK05855 short chain dehydrogenase; Validated

Probab=90.20  E-value=0.83  Score=48.22  Aligned_cols=36  Identities=28%  Similarity=0.399  Sum_probs=30.4

Q ss_pred             HHHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243            7 LEAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus         7 q~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      +..+++.+++|+| .||||.++++.|+..|.. +.+++
T Consensus       310 ~~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~-v~~~~  346 (582)
T PRK05855        310 RGPFSGKLVVVTGAGSGIGRETALAFAREGAE-VVASD  346 (582)
T ss_pred             cccCCCCEEEEECCcCHHHHHHHHHHHHCCCE-EEEEe
Confidence            3456788999998 599999999999999986 77766

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=90.20  E-value=1.2  Score=41.40  Aligned_cols=29  Identities=31%  Similarity=0.510  Sum_probs=24.5

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQD   38 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~   38 (410)
                      |.+++++|.| .|++|.++++.|+..|...
T Consensus         2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v   31 (250)
T PRK08063          2 FSGKVALVTGSSRGIGKAIALRLAEEGYDI   31 (250)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEE
Confidence            4567899998 6899999999999998653

>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes

Probab=90.19  E-value=1.9  Score=42.39  Aligned_cols=38  Identities=21%  Similarity=0.451  Sum_probs=31.2

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCC--cEEEEeCCccCccc
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMDTIEVSN   51 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~--~i~liD~D~Ve~sN   51 (410)
                      +|.|||+||-||.++..|.+.|+.  .+..+|.|.-....
T Consensus         2 ~i~viGvGg~G~n~v~~l~~~~~~~~~~~a~ntD~~~L~~   41 (304)
T cd02201           2 KIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALAK   41 (304)
T ss_pred             eEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhc
Confidence            689999999999999999999986  45677877744433

FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.

>PRK13243 glyoxylate reductase; Reviewed

Probab=90.18  E-value=0.36  Score=48.12  Aligned_cols=91  Identities=14%  Similarity=0.168  Sum_probs=57.7

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      .|.+++|.|||+|.+|.++++.|...|. ++..+|...-                    ....    ...  .+.     
T Consensus       147 ~L~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~--------------------~~~~----~~~--~~~-----  194 (333)
T PRK13243        147 DVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRK--------------------PEAE----KEL--GAE-----  194 (333)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCC--------------------hhhH----HHc--CCE-----
Confidence            5889999999999999999999998887 4777764210                    0000    011  111     


Q ss_pred             cCCCCCcchHhhhccCcEEEEccC-ChHHHHHHHHHHHH---CCCcEEEecc
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLD-NLDARRHVNRLCLA---ADVPLVESGT  136 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~D-n~~~r~~i~~~c~~---~~~p~i~~g~  136 (410)
                        ..   ...+.++++|+|+.++. +.+++..+++....   .+.-+|+.+.
T Consensus       195 --~~---~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aR  241 (333)
T PRK13243        195 --YR---PLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTAR  241 (333)
T ss_pred             --ec---CHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcC
Confidence              00   12467889999999764 45567777654333   2334666653

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=90.15  E-value=0.28  Score=44.62  Aligned_cols=106  Identities=24%  Similarity=0.270  Sum_probs=63.2

Q ss_pred             cEEEECCcHHHHH-HHHHHHH----hCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           14 KVLMVGAGGIGCE-LLKTLAL----SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        14 ~VlvvG~GgiG~e-v~knLa~----~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      ||.+||+|+.-.. .+..+..    .+.++|.|+|-|.   .-|..            =...+++.+++.+++++|+...
T Consensus         1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~---~RL~~------------~~~~~~~~~~~~~~~~~v~~tt   65 (183)
T PF02056_consen    1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDE---ERLEI------------VERLARRMVEEAGADLKVEATT   65 (183)
T ss_dssp             EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCH---HHHHH------------HHHHHHHHHHHCTTSSEEEEES
T ss_pred             CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCH---HHHHH------------HHHHHHHHHHhcCCCeEEEEeC
Confidence            6899999987654 3333332    2345899988654   11110            0123555566788888888765


Q ss_pred             cCCCCCcchHhhhccCcEEEEcc--CChHHHHHHHHHHHHCCCcEEEecccCccc
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGL--DNLDARRHVNRLCLAADVPLVESGTTGFLG  141 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~--Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G  141 (410)
                      +.       .+-++++|+||++.  ...++|..=.+...++|+.-....+.|.+|
T Consensus        66 d~-------~eAl~gADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG  113 (183)
T PF02056_consen   66 DR-------REALEGADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGG  113 (183)
T ss_dssp             SH-------HHHHTTESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHH
T ss_pred             CH-------HHHhCCCCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccH
Confidence            43       35678999999974  445666665666677776554455555544

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=90.14  E-value=1.1  Score=44.28  Aligned_cols=33  Identities=30%  Similarity=0.445  Sum_probs=29.4

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCC-cEEEEeCC
Q 015243           13 AKVLMVGA-GGIGCELLKTLALSGFQ-DIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG~-GgiG~ev~knLa~~Gv~-~i~liD~D   45 (410)
                      ++|.|+|+ |.+|..++..|+..|.. +++++|.+
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~   35 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRP   35 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECc
Confidence            47999998 99999999999999974 79999963

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.13  E-value=1.5  Score=42.75  Aligned_cols=83  Identities=18%  Similarity=0.238  Sum_probs=51.5

Q ss_pred             HHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEE
Q 015243            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (410)
Q Consensus         8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~   86 (410)
                      ..|.+++++|.| .||||.++++.|+..|.. +.++|...                  ..+.+.+++.++...  .++..
T Consensus         8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~-Vv~~~~~~------------------~~~~~~~~~~i~~~g--~~~~~   66 (306)
T PRK07792          8 TDLSGKVAVVTGAAAGLGRAEALGLARLGAT-VVVNDVAS------------------ALDASDVLDEIRAAG--AKAVA   66 (306)
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEecCCc------------------hhHHHHHHHHHHhcC--CeEEE
Confidence            457788999998 579999999999999974 66666321                  123344445554432  35566


Q ss_pred             EccCCCCCcchHhh------hccCcEEEEcc
Q 015243           87 HHANVKDPKFNVEF------FKQFNVVLNGL  111 (410)
Q Consensus        87 ~~~~i~~~~~~~~~------~~~~DvVi~a~  111 (410)
                      +..++.+......+      +...|+||++.
T Consensus        67 ~~~Dv~d~~~~~~~~~~~~~~g~iD~li~nA   97 (306)
T PRK07792         67 VAGDISQRATADELVATAVGLGGLDIVVNNA   97 (306)
T ss_pred             EeCCCCCHHHHHHHHHHHHHhCCCCEEEECC
Confidence            66666443211122      34678888753

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=90.12  E-value=1.4  Score=43.99  Aligned_cols=92  Identities=14%  Similarity=0.187  Sum_probs=58.9

Q ss_pred             hCCcEEEECC-cHHHHHHHHHHHH--hCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243           11 KGAKVLMVGA-GGIGCELLKTLAL--SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus        11 ~~~~VlvvG~-GgiG~ev~knLa~--~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      +..+|.|||+ |-+|.|+++.|..  .-+.++..+-.+               +..|+.=.      +.  .-++.++  
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~---------------~saG~~~~------~~--~~~~~v~--   57 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASE---------------ESAGETLR------FG--GKSVTVQ--   57 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc---------------CcCCceEE------EC--CcceEEE--
Confidence            4678999996 8999999999998  566677766432               22333211      00  1123333  


Q ss_pred             ccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEec
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g  135 (410)
                        .++     ..-|+++|+|+.|+..-.++.+..++ ...+.++||.+
T Consensus        58 --~~~-----~~~~~~~Dvvf~a~p~~~s~~~~~~~-~~~g~~VIDlS   97 (336)
T PRK08040         58 --DAA-----EFDWSQAQLAFFVAGREASAAYAEEA-TNAGCLVIDSS   97 (336)
T ss_pred             --eCc-----hhhccCCCEEEECCCHHHHHHHHHHH-HHCCCEEEECC
Confidence              121     12247899999999877666666555 55789999854

>PRK06046 alanine dehydrogenase; Validated

Probab=90.11  E-value=2.2  Score=42.44  Aligned_cols=75  Identities=15%  Similarity=0.205  Sum_probs=50.3

Q ss_pred             hCCcEEEECCcHHHHHHHHHHH-HhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           11 KGAKVLMVGAGGIGCELLKTLA-LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa-~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      ...++.|+|+|+.|...+..|. ..++..+.+.|.+                   ..+++.+++.+++..+ +++.... 
T Consensus       128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~-------------------~~~~~~~~~~~~~~~~-~~v~~~~-  186 (326)
T PRK06046        128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRT-------------------KSSAEKFVERMSSVVG-CDVTVAE-  186 (326)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCC-------------------HHHHHHHHHHHHhhcC-ceEEEeC-
Confidence            3578999999999999999998 4577888887633                   3455556666554322 3443322 


Q ss_pred             CCCCCcchHhhhccCcEEEEccCC
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLDN  113 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~Dn  113 (410)
                      +      ..+.+. +|+|+.|+-+
T Consensus       187 ~------~~~~l~-aDiVv~aTps  203 (326)
T PRK06046        187 D------IEEACD-CDILVTTTPS  203 (326)
T ss_pred             C------HHHHhh-CCEEEEecCC
Confidence            1      123445 9999999865

>PRK10537 voltage-gated potassium channel; Provisional

Probab=90.09  E-value=1.3  Score=45.18  Aligned_cols=88  Identities=11%  Similarity=0.041  Sum_probs=56.8

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      ++.+|+|+|.|.+|.++++.|...|. .++++|.|.++.      . +                    ..+.  ....++
T Consensus       239 ~k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~~------~-~--------------------~~g~--~vI~GD  288 (393)
T PRK10537        239 RKDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLEH------R-L--------------------PDDA--DLIPGD  288 (393)
T ss_pred             cCCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhhh------h-c--------------------cCCC--cEEEeC
Confidence            36789999999999999999998886 588888763210      0 0                    0011  123333


Q ss_pred             CCCC-cchHhhhccCcEEEEccCChHHHHHHHHHHHHCC
Q 015243           91 VKDP-KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAAD  128 (410)
Q Consensus        91 i~~~-~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~  128 (410)
                      .++. .....-+++++.|+.+++|.+....+-..+++.+
T Consensus       289 ~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~  327 (393)
T PRK10537        289 SSDSAVLKKAGAARARAILALRDNDADNAFVVLAAKEMS  327 (393)
T ss_pred             CCCHHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhC
Confidence            3321 1122235688999999888776666666677654

>PRK07774 short chain dehydrogenase; Provisional

Probab=90.03  E-value=1.8  Score=40.34  Aligned_cols=35  Identities=29%  Similarity=0.517  Sum_probs=29.2

Q ss_pred             HHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .+++++++|.|+ |++|..+++.|+..|. ++.++|.
T Consensus         3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r   38 (250)
T PRK07774          3 RFDDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADI   38 (250)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            356788999996 9999999999999996 4777663

>PRK07102 short chain dehydrogenase; Provisional

Probab=90.03  E-value=1.9  Score=40.18  Aligned_cols=32  Identities=22%  Similarity=0.386  Sum_probs=26.7

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ++|+|.| .|+||.++++.|+..|. +++++|.+
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~   34 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGA-RLYLAARD   34 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCC
Confidence            5788888 69999999999999996 47777643

>PRK06125 short chain dehydrogenase; Provisional

Probab=90.02  E-value=1.6  Score=41.09  Aligned_cols=35  Identities=34%  Similarity=0.697  Sum_probs=29.9

Q ss_pred             HhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +.+++++|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus         5 ~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~   40 (259)
T PRK06125          5 LAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARD   40 (259)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence            56789999986 7999999999999998 68887743

>PRK09330 cell division protein FtsZ; Validated

Probab=90.01  E-value=1.8  Score=43.94  Aligned_cols=111  Identities=19%  Similarity=0.219  Sum_probs=63.5

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCC--cEEEEeCCc--cCcccCccccCCCCCC-----CCchHHHHHHHHHHhhC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMDT--IEVSNLNRQFLFRQSH-----VGQSKAKVARDAVLKFR   79 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~--~i~liD~D~--Ve~sNL~Rq~lf~~~d-----iG~~Ka~~a~~~l~~~n   79 (410)
                      .....+|-|||+||-||.++.+|...|+.  .+..++.|.  .+.+...+-.+++.+-     .| ...++.++...+.-
T Consensus        10 ~~~~~~IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD~q~L~~~~a~~ki~lG~~~t~GlGaG-~~pe~G~~aaee~~   88 (384)
T PRK09330         10 ENQGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDAQALLKSKAPVKIQLGEKLTRGLGAG-ANPEVGRKAAEESR   88 (384)
T ss_pred             cccCCeEEEEEECCcHHHHHHHHHHcCCCCceEEEEeCcHHHHhcCCCCeEEEcCCcccccCCCC-CCHHHHHHHHHHHH
Confidence            34568899999999999999999999976  566777766  3444443333433321     11 11112222211110


Q ss_pred             CCCeEEEEccCCCCCcchHhhhccCcEEEEcc------CChHHHHHHHHHHHHCCCcEEEecc
Q 015243           80 PQMSITAHHANVKDPKFNVEFFKQFNVVLNGL------DNLDARRHVNRLCLAADVPLVESGT  136 (410)
Q Consensus        80 p~v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~------Dn~~~r~~i~~~c~~~~~p~i~~g~  136 (410)
                      .         .      ....++++|.|+.+.      .+-.+ -.+.+++++++++.+..-+
T Consensus        89 e---------~------I~~~l~~~D~vfI~AGmGGGTGTGaa-pvIA~iake~g~ltvaVvt  135 (384)
T PRK09330         89 E---------E------IREALEGADMVFITAGMGGGTGTGAA-PVVAEIAKELGILTVAVVT  135 (384)
T ss_pred             H---------H------HHHHHcCCCEEEEEecCCCcccHHHH-HHHHHHHHHcCCcEEEEEe
Confidence            0         0      123346678776632      22233 3788999998876665443

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=89.91  E-value=1.4  Score=40.58  Aligned_cols=35  Identities=31%  Similarity=0.560  Sum_probs=29.4

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +.+++|+|.| .|++|.++++.|+..|.. +.+++.+
T Consensus         3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~   38 (246)
T PRK05653          3 LQGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSN   38 (246)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            4567899998 599999999999999987 7777654

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=89.91  E-value=1.1  Score=47.79  Aligned_cols=78  Identities=18%  Similarity=0.221  Sum_probs=50.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      +-+|+|+|+|.+|.++++.|...|.. ++++|.|.-                   |++.+    ++.    ......++.
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~g~~-vvvId~d~~-------------------~~~~~----~~~----g~~~i~GD~  468 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAAGIP-LVVIETSRT-------------------RVDEL----RER----GIRAVLGNA  468 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHCCCC-EEEEECCHH-------------------HHHHH----HHC----CCeEEEcCC
Confidence            47899999999999999999999965 899986542                   22222    221    233444555


Q ss_pred             CCCc-chHhhhccCcEEEEccCChHHH
Q 015243           92 KDPK-FNVEFFKQFNVVLNGLDNLDAR  117 (410)
Q Consensus        92 ~~~~-~~~~~~~~~DvVi~a~Dn~~~r  117 (410)
                      ++.. ....-++++|.|+.++++....
T Consensus       469 ~~~~~L~~a~i~~a~~viv~~~~~~~~  495 (558)
T PRK10669        469 ANEEIMQLAHLDCARWLLLTIPNGYEA  495 (558)
T ss_pred             CCHHHHHhcCccccCEEEEEcCChHHH
Confidence            4321 1223357889888887664433

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.90  E-value=2.2  Score=44.18  Aligned_cols=32  Identities=22%  Similarity=0.418  Sum_probs=28.2

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ++|+|+|+|+.|..+++.|...|. .+++.|..
T Consensus         1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~   32 (459)
T PRK02705          1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRN   32 (459)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            479999999999999999999997 58888844

>PRK15076 alpha-galactosidase; Provisional

Probab=89.88  E-value=1.2  Score=46.05  Aligned_cols=107  Identities=17%  Similarity=0.239  Sum_probs=61.2

Q ss_pred             CcEEEECCcHHHHHHHH--HHH-HhCC--CcEEEEeCCccCcccCccccCCCCCCCCchH-HHH-HHHHHHhhCCCCeEE
Q 015243           13 AKVLMVGAGGIGCELLK--TLA-LSGF--QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK-AKV-ARDAVLKFRPQMSIT   85 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~k--nLa-~~Gv--~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~K-a~~-a~~~l~~~np~v~i~   85 (410)
                      .+|.|||+|++|...+-  .++ ..+.  ..++|+|-|.=                 +.+ +.. +.+.+....+.++|+
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~e-----------------r~~~~~~l~~~~~~~~~~~~~i~   64 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPE-----------------RLEESEIVARKLAESLGASAKIT   64 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHH-----------------HHHHHHHHHHHHHHhcCCCeEEE
Confidence            58999999999865544  565 2333  37999984330                 011 222 333344445556666


Q ss_pred             EEccCCCCCcchHhhhccCcEEEEccCC--hHHHHHHH-HHHHHCCCcEEEecccCccceE
Q 015243           86 AHHANVKDPKFNVEFFKQFNVVLNGLDN--LDARRHVN-RLCLAADVPLVESGTTGFLGQV  143 (410)
Q Consensus        86 ~~~~~i~~~~~~~~~~~~~DvVi~a~Dn--~~~r~~i~-~~c~~~~~p~i~~g~~G~~G~v  143 (410)
                      ...+.       .+-++++|+||.+.--  .+.+...+ +...++|+----..+.|..|..
T Consensus        65 ~ttD~-------~eal~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~  118 (431)
T PRK15076         65 ATTDR-------REALQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIM  118 (431)
T ss_pred             EECCH-------HHHhCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchh
Confidence            54221       2446899999997643  34444344 6778888752112555666644

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=89.85  E-value=0.42  Score=49.05  Aligned_cols=35  Identities=23%  Similarity=0.428  Sum_probs=31.2

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +.+.+|+|+|+|.+|..+++.+...|. +++++|.|
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d  234 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVD  234 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            467899999999999999999999999 68888854

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK06196 oxidoreductase; Provisional

Probab=89.85  E-value=1.2  Score=43.51  Aligned_cols=36  Identities=22%  Similarity=0.466  Sum_probs=29.2

Q ss_pred             HHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .+.+++|+|.|+ ||||.++++.|+..|.. +.+++.+
T Consensus        23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~-Vv~~~R~   59 (315)
T PRK06196         23 DLSGKTAIVTGGYSGLGLETTRALAQAGAH-VIVPARR   59 (315)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence            356788999985 89999999999999974 7777643

>PRK08643 acetoin reductase; Validated

Probab=89.81  E-value=2.1  Score=40.15  Aligned_cols=32  Identities=34%  Similarity=0.635  Sum_probs=26.5

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ++.++|.| .|+||.++++.|+..|. ++.++|.
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r   34 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDY   34 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            46788887 78999999999999997 5777763

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=89.80  E-value=1.7  Score=40.37  Aligned_cols=34  Identities=26%  Similarity=0.583  Sum_probs=28.1

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      |++++++|.| .|++|.++++.|+..|. ++.++|.
T Consensus         1 ~~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r   35 (250)
T TIGR03206         1 LKDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDL   35 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecC
Confidence            4578999998 68999999999999887 4677653

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK06139 short chain dehydrogenase; Provisional

Probab=89.77  E-value=1.4  Score=43.74  Aligned_cols=35  Identities=29%  Similarity=0.485  Sum_probs=29.4

Q ss_pred             HHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .+.+++|+|.|+ ||||.++++.|+..|.. +.+++.
T Consensus         4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~-Vvl~~R   39 (330)
T PRK06139          4 PLHGAVVVITGASSGIGQATAEAFARRGAR-LVLAAR   39 (330)
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            366789999996 89999999999999975 777663

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=89.76  E-value=0.45  Score=47.40  Aligned_cols=88  Identities=22%  Similarity=0.237  Sum_probs=57.4

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      .|.+++|.|||+|.+|..+++.|...|. ++..+|...-                   +.   ...       +.     
T Consensus       143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~-------------------~~---~~~-------~~-----  187 (330)
T PRK12480        143 PVKNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPN-------------------KD---LDF-------LT-----  187 (330)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChh-------------------Hh---hhh-------hh-----
Confidence            5788999999999999999999998886 4778774320                   00   000       00     


Q ss_pred             cCCCCCcchHhhhccCcEEEEccCCh-HHHHHHHHHHHH---CCCcEEEec
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLDNL-DARRHVNRLCLA---ADVPLVESG  135 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~-~~r~~i~~~c~~---~~~p~i~~g  135 (410)
                        ...  ...+.++++|+|+.++... +.+..+++....   .+..+|+++
T Consensus       188 --~~~--~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~a  234 (330)
T PRK12480        188 --YKD--SVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAA  234 (330)
T ss_pred             --ccC--CHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcC
Confidence              010  1246788999999987654 456666654433   244566655

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=89.74  E-value=1.2  Score=35.76  Aligned_cols=92  Identities=22%  Similarity=0.392  Sum_probs=54.2

Q ss_pred             hCCcEEEECCcHHHHHHHH-HHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           11 KGAKVLMVGAGGIGCELLK-TLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~k-nLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      +..+|+|+|+|++|..++. .+...|++-..+.|.|              ++.+|+.           +. ++.|..   
T Consensus         2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~--------------~~~~G~~-----------i~-gipV~~---   52 (96)
T PF02629_consen    2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVD--------------PEKIGKE-----------IG-GIPVYG---   52 (96)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEEC--------------TTTTTSE-----------ET-TEEEES---
T ss_pred             CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcC--------------CCccCcE-----------EC-CEEeec---
Confidence            3568999999999998874 3446788878888833              2233321           10 223221   


Q ss_pred             CCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecc
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT  136 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~  136 (410)
                      .+.   ...++. +.|+.+.++....++..+.+++. .++..|..-+
T Consensus        53 ~~~---~l~~~~-~i~iaii~VP~~~a~~~~~~~~~-~gIk~i~nft   94 (96)
T PF02629_consen   53 SMD---ELEEFI-EIDIAIITVPAEAAQEVADELVE-AGIKGIVNFT   94 (96)
T ss_dssp             SHH---HHHHHC-TTSEEEEES-HHHHHHHHHHHHH-TT-SEEEEES
T ss_pred             cHH---Hhhhhh-CCCEEEEEcCHHHHHHHHHHHHH-cCCCEEEEeC
Confidence            111   112333 38999999876666666666555 7777666543

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=89.74  E-value=0.49  Score=46.63  Aligned_cols=31  Identities=39%  Similarity=0.652  Sum_probs=28.7

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCC-CcEEEEeC
Q 015243           14 KVLMVGAGGIGCELLKTLALSGF-QDIHIIDM   44 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~   44 (410)
                      +|.|||+|.+|+.++..|+..|+ .++.++|.
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~   33 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDI   33 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence            79999999999999999999996 67999994

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=89.74  E-value=1.5  Score=41.03  Aligned_cols=36  Identities=28%  Similarity=0.515  Sum_probs=30.5

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .+.+++++|.| .|+||..+++.|+..|. ++.++|.+
T Consensus         8 ~~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~   44 (256)
T PRK06124          8 SLAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRN   44 (256)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCC
Confidence            36788999998 58999999999999997 58887754

>PRK12367 short chain dehydrogenase; Provisional

Probab=89.73  E-value=0.6  Score=44.23  Aligned_cols=41  Identities=20%  Similarity=0.321  Sum_probs=34.8

Q ss_pred             HHHHHHHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            4 ERQLEAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         4 ~e~q~~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +-.|.++++++++|.|+ ||||.++++.|+..|. ++.++|.+
T Consensus         6 ~~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~   47 (245)
T PRK12367          6 PMAQSTWQGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHS   47 (245)
T ss_pred             hhhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            34689999999999985 8999999999999997 47777754

>PRK12827 short chain dehydrogenase; Provisional

Probab=89.70  E-value=2.1  Score=39.69  Aligned_cols=33  Identities=30%  Similarity=0.666  Sum_probs=28.3

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      |.+++++|.| .|+||.++++.|+..|.. +++++
T Consensus         4 ~~~~~ilItGasg~iG~~la~~l~~~g~~-v~~~~   37 (249)
T PRK12827          4 LDSRRVLITGGSGGLGRAIAVRLAADGAD-VIVLD   37 (249)
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEc
Confidence            5678899998 799999999999999975 67766

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=89.66  E-value=0.59  Score=47.46  Aligned_cols=39  Identities=23%  Similarity=0.390  Sum_probs=33.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHh-CCCcEEEEeCCccCcc
Q 015243           12 GAKVLMVGAGGIGCELLKTLALS-GFQDIHIIDMDTIEVS   50 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~-Gv~~i~liD~D~Ve~s   50 (410)
                      ...|+|||+|-+|+.+|..|++. |..+++|+|.+.+-..
T Consensus        30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~g   69 (407)
T TIGR01373        30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGG   69 (407)
T ss_pred             cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCc
Confidence            44699999999999999999985 8778999998876543

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=89.64  E-value=0.48  Score=46.47  Aligned_cols=35  Identities=31%  Similarity=0.510  Sum_probs=31.6

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +.+++|+|+|+|++|..+++.|...|. +++++|.+
T Consensus       150 l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~  184 (296)
T PRK08306        150 IHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARK  184 (296)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            568999999999999999999999997 89998743

>PRK07109 short chain dehydrogenase; Provisional

Probab=89.55  E-value=1.6  Score=43.25  Aligned_cols=34  Identities=21%  Similarity=0.435  Sum_probs=28.6

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      .+.+++|+|.| .||||.++++.|+..|. ++.+++
T Consensus         5 ~l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~   39 (334)
T PRK07109          5 PIGRQVVVITGASAGVGRATARAFARRGA-KVVLLA   39 (334)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEE
Confidence            35678899998 58999999999999996 477776

>PRK08226 short chain dehydrogenase; Provisional

Probab=89.54  E-value=1.5  Score=41.24  Aligned_cols=35  Identities=26%  Similarity=0.552  Sum_probs=29.7

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ++.+++++|.| .|+||..+++.|+..|.. +.+++.
T Consensus         3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~-Vv~~~r   38 (263)
T PRK08226          3 KLTGKTALITGALQGIGEGIARVFARHGAN-LILLDI   38 (263)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEecC
Confidence            46788999997 789999999999999975 777763

>PRK08278 short chain dehydrogenase; Provisional

Probab=89.52  E-value=2  Score=41.02  Aligned_cols=35  Identities=26%  Similarity=0.446  Sum_probs=29.4

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +.+++++|.| .|++|.++++.|+..|. ++.++|..
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~   39 (273)
T PRK08278          4 LSGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKT   39 (273)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence            5678899998 68999999999999997 57777744

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=89.51  E-value=2.1  Score=41.85  Aligned_cols=80  Identities=18%  Similarity=0.165  Sum_probs=46.5

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      +++|+|.| .|+||+.+++.|+..|.. +.+++.|.-..                   +.....+......-+++....+
T Consensus         5 ~k~vlVtG~~G~IG~~l~~~L~~~G~~-V~~~~r~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~D   64 (325)
T PLN02989          5 GKVVCVTGASGYIASWIVKLLLFRGYT-INATVRDPKDR-------------------KKTDHLLALDGAKERLKLFKAD   64 (325)
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCE-EEEEEcCCcch-------------------hhHHHHHhccCCCCceEEEeCC
Confidence            57899998 599999999999999864 55554332110                   0011111000011245555666


Q ss_pred             CCCCcchHhhhccCcEEEEcc
Q 015243           91 VKDPKFNVEFFKQFNVVLNGL  111 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~  111 (410)
                      +++...-...+++.|+||.+.
T Consensus        65 ~~d~~~~~~~~~~~d~vih~A   85 (325)
T PLN02989         65 LLDEGSFELAIDGCETVFHTA   85 (325)
T ss_pred             CCCchHHHHHHcCCCEEEEeC
Confidence            655443445677889888854

>PLN02780 ketoreductase/ oxidoreductase

Probab=89.50  E-value=2.6  Score=41.65  Aligned_cols=62  Identities=21%  Similarity=0.312  Sum_probs=43.5

Q ss_pred             hCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      .++.++|.| .||||.++++.|+..|. ++.+++.+                   ..+.+.+++.+++..+..++..+..
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~-------------------~~~l~~~~~~l~~~~~~~~~~~~~~  111 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARN-------------------PDKLKDVSDSIQSKYSKTQIKTVVV  111 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECC-------------------HHHHHHHHHHHHHHCCCcEEEEEEE
Confidence            467888888 57999999999999997 58887632                   1345556666666666556655554


Q ss_pred             CCC
Q 015243           90 NVK   92 (410)
Q Consensus        90 ~i~   92 (410)
                      +++
T Consensus       112 Dl~  114 (320)
T PLN02780        112 DFS  114 (320)
T ss_pred             ECC
Confidence            443

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=89.43  E-value=0.44  Score=46.98  Aligned_cols=31  Identities=39%  Similarity=0.680  Sum_probs=29.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCC-cEEEEe
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQ-DIHIID   43 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~-~i~liD   43 (410)
                      .||.|+|+|.+|+.++-.|+.-+++ .+.|+|
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiD   32 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLID   32 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEE
Confidence            4799999999999999999999999 999998

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=89.43  E-value=2.7  Score=40.49  Aligned_cols=97  Identities=22%  Similarity=0.285  Sum_probs=59.1

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHH-hCCCcEEEEe-CCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC-CCeEEEEc
Q 015243           13 AKVLMVG-AGGIGCELLKTLAL-SGFQDIHIID-MDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP-QMSITAHH   88 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~-~Gv~~i~liD-~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np-~v~i~~~~   88 (410)
                      .||.|+| +|.+|..+++.+.. .++.-+-++| .+.-.              +|+.    +.+. ....+ .+.+  + 
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~--------------~~~~----~~~~-~~~~~~gv~~--~-   59 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSL--------------QGTD----AGEL-AGIGKVGVPV--T-   59 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc--------------cCCC----HHHh-cCcCcCCcee--e-
Confidence            4899999 59999999999985 4665555666 22100              1111    1111 11111 1111  1 


Q ss_pred             cCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCc
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGF  139 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~  139 (410)
                      .++      ++....+|+||+++ .+++-...-..|.++++|++.+-+ |+
T Consensus        60 ~d~------~~l~~~~DvVIdfT-~p~~~~~~~~~al~~g~~vVigtt-g~  102 (266)
T TIGR00036        60 DDL------EAVETDPDVLIDFT-TPEGVLNHLKFALEHGVRLVVGTT-GF  102 (266)
T ss_pred             CCH------HHhcCCCCEEEECC-ChHHHHHHHHHHHHCCCCEEEECC-CC
Confidence            111      12234689999998 567777888899999999998765 54

>PLN02928 oxidoreductase family protein

Probab=89.42  E-value=0.42  Score=48.00  Aligned_cols=35  Identities=31%  Similarity=0.472  Sum_probs=31.0

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .|.+++|.|+|.|.||.++++.|...|+ +++.+|.
T Consensus       156 ~l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr  190 (347)
T PLN02928        156 TLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRR  190 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECC
Confidence            4788999999999999999999998887 5777764

>PRK08818 prephenate dehydrogenase; Provisional

Probab=89.41  E-value=1.9  Score=43.66  Aligned_cols=35  Identities=26%  Similarity=0.164  Sum_probs=28.1

Q ss_pred             HhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +...+|+|||. |.+|..+++.|-...-.+|+.+|.
T Consensus         2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~   37 (370)
T PRK08818          2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDP   37 (370)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence            45789999999 999999999999653335777775

>PRK08374 homoserine dehydrogenase; Provisional

Probab=89.38  E-value=3.3  Score=41.35  Aligned_cols=109  Identities=17%  Similarity=0.220  Sum_probs=58.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHHH--------hCCC--cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLAL--------SGFQ--DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~--------~Gv~--~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      ..+|.|+|+|.+|+.+++.|..        .|+.  -+.+.|.+         ..+|.++.+.-.+   +.+..++... 
T Consensus         2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~---------~~~~~~~Gid~~~---l~~~~~~~~~-   68 (336)
T PRK08374          2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTS---------GTIWLPEDIDLRE---AKEVKENFGK-   68 (336)
T ss_pred             eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCC---------ccccCCCCCChHH---HHHhhhccCc-
Confidence            3689999999999999999876        5643  23344532         1223433333222   2222222111 


Q ss_pred             CeEEEEccCCC-CCcchHhhh--ccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecc
Q 015243           82 MSITAHHANVK-DPKFNVEFF--KQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT  136 (410)
Q Consensus        82 v~i~~~~~~i~-~~~~~~~~~--~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~  136 (410)
                        +..+..... .....++++  ..+|+||+++....+. .+-..+...+++++.+..
T Consensus        69 --~~~~~~~~~~~~~~~~ell~~~~~DVvVd~t~~~~a~-~~~~~al~~G~~VVtanK  123 (336)
T PRK08374         69 --LSNWGNDYEVYNFSPEEIVEEIDADIVVDVTNDKNAH-EWHLEALKEGKSVVTSNK  123 (336)
T ss_pred             --hhhccccccccCCCHHHHHhcCCCCEEEECCCcHHHH-HHHHHHHhhCCcEEECCH
Confidence              111110000 001123454  4789999998654444 445566678898886643

>PRK07806 short chain dehydrogenase; Provisional

Probab=89.37  E-value=1.7  Score=40.45  Aligned_cols=33  Identities=30%  Similarity=0.492  Sum_probs=27.4

Q ss_pred             HhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEe
Q 015243           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        10 L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      +.+++++|.|+ |+||..+++.|+..|.. +.+++
T Consensus         4 ~~~k~vlItGasggiG~~l~~~l~~~G~~-V~~~~   37 (248)
T PRK07806          4 LPGKTALVTGSSRGIGADTAKILAGAGAH-VVVNY   37 (248)
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHHHCCCE-EEEEe
Confidence            56789999995 99999999999999964 55554

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=89.35  E-value=2.9  Score=44.59  Aligned_cols=105  Identities=17%  Similarity=0.265  Sum_probs=66.9

Q ss_pred             HHHhCCcEEEECCcHHHHHHHHHHHH-----hCC------CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHH
Q 015243            8 EAIKGAKVLMVGAGGIGCELLKTLAL-----SGF------QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVL   76 (410)
Q Consensus         8 ~~L~~~~VlvvG~GgiG~ev~knLa~-----~Gv------~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~   76 (410)
                      .+|.+.||+++|+|+.|.-+++.|+.     .|+      ++|.++|.+-+=..+  |     .+++...|..-++.   
T Consensus       317 ~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~--r-----~~~l~~~k~~fa~~---  386 (581)
T PLN03129        317 GDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKS--R-----KDSLQPFKKPFAHD---  386 (581)
T ss_pred             CchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCC--C-----CccChHHHHHHHhh---
Confidence            46889999999999999999999987     477      689999977532221  1     11133444443332   


Q ss_pred             hhCCCCeEEEEccCCCCCcchHhhhcc--CcEEEEccC--ChHHHHHHHHHHHHCCCcEEEecc
Q 015243           77 KFRPQMSITAHHANVKDPKFNVEFFKQ--FNVVLNGLD--NLDARRHVNRLCLAADVPLVESGT  136 (410)
Q Consensus        77 ~~np~v~i~~~~~~i~~~~~~~~~~~~--~DvVi~a~D--n~~~r~~i~~~c~~~~~p~i~~g~  136 (410)
                        .+.         .   .-..+.++.  .|++|.+..  +.-....+..++..+..|+|.+-+
T Consensus       387 --~~~---------~---~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLS  436 (581)
T PLN03129        387 --HEP---------G---ASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALS  436 (581)
T ss_pred             --ccc---------C---CCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC
Confidence              111         0   012344555  677777542  344567777788777888887643

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=89.30  E-value=0.38  Score=48.88  Aligned_cols=99  Identities=17%  Similarity=0.240  Sum_probs=65.8

Q ss_pred             HHHhCCcEEEECCcHHHHHHHHHHHHhCCC--cEEEEeCCccCcccCccccCCCCC-C--CCchHHHHHHHHHHhhCCCC
Q 015243            8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMDTIEVSNLNRQFLFRQS-H--VGQSKAKVARDAVLKFRPQM   82 (410)
Q Consensus         8 ~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~--~i~liD~D~Ve~sNL~Rq~lf~~~-d--iG~~Ka~~a~~~l~~~np~v   82 (410)
                      ++|++.+|++.|+|+-|+.+++.|..+|+.  +|.++|.--+         ++... |  .++.|.+.+.+......   
T Consensus       195 k~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~---------l~~~r~~~~~~~~k~~~a~~~~~~~~---  262 (432)
T COG0281         195 KKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGL---------LYDGREDLTMNQKKYAKAIEDTGERT---  262 (432)
T ss_pred             CCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCc---------ccCCCcccccchHHHHHHHhhhcccc---
Confidence            468899999999999999999999999998  9999996543         22222 2  46667665543332221   


Q ss_pred             eEEEEccCCCCCcchHhhhccCcEEEEccCC-hHHHHHHHHHHHHCCCcEEEec
Q 015243           83 SITAHHANVKDPKFNVEFFKQFNVVLNGLDN-LDARRHVNRLCLAADVPLVESG  135 (410)
Q Consensus        83 ~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn-~~~r~~i~~~c~~~~~p~i~~g  135 (410)
                      .              ..-+.+.|+.|.+... .-...++.+++..   |+|.+-
T Consensus       263 ~--------------~~~~~~adv~iG~S~~G~~t~e~V~~Ma~~---PiIfal  299 (432)
T COG0281         263 L--------------DLALAGADVLIGVSGVGAFTEEMVKEMAKH---PIIFAL  299 (432)
T ss_pred             c--------------cccccCCCEEEEcCCCCCcCHHHHHHhccC---CEEeec
Confidence            0              0134678888886543 2234555666543   777664

>PRK09072 short chain dehydrogenase; Provisional

Probab=89.29  E-value=1.4  Score=41.51  Aligned_cols=34  Identities=35%  Similarity=0.683  Sum_probs=29.0

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +.+++++|.| .|++|.++++.|+..|.. +++++.
T Consensus         3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~-V~~~~r   37 (263)
T PRK09072          3 LKDKRVLLTGASGGIGQALAEALAAAGAR-LLLVGR   37 (263)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEEC
Confidence            4678899998 699999999999999964 888774

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=89.26  E-value=0.52  Score=46.94  Aligned_cols=36  Identities=36%  Similarity=0.429  Sum_probs=30.9

Q ss_pred             HHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243            7 LEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus         7 q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      ...|++++|.|||+|.+|..++++|..+|+ ++.+.+
T Consensus        12 ~~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~   47 (330)
T PRK05479         12 LSLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGL   47 (330)
T ss_pred             hhhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEE
Confidence            467899999999999999999999999998 455544

>PRK07074 short chain dehydrogenase; Provisional

Probab=89.25  E-value=1.8  Score=40.67  Aligned_cols=32  Identities=31%  Similarity=0.550  Sum_probs=27.0

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        12 ~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +++++|.|+ |+||.++++.|+..|. ++.++|.
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r   34 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDI   34 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeC
Confidence            567999986 8999999999999986 5787764

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=89.17  E-value=2.8  Score=41.98  Aligned_cols=95  Identities=23%  Similarity=0.257  Sum_probs=53.6

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCcE-EEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           13 AKVLMVGA-GGIGCELLKTLALSGFQDI-HIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        13 ~~VlvvG~-GgiG~ev~knLa~~Gv~~i-~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      .||+|+|+ |.+|.++++.|....--++ .+.|.                ...|+.        +.+..|.+... ....
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~----------------~~~g~~--------l~~~~~~~~~~-~~~~   57 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSR----------------SSAGKP--------LSDVHPHLRGL-VDLV   57 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECc----------------cccCcc--------hHHhCcccccc-cCce
Confidence            68999997 8899999999997633334 33331                111211        11111211100 0001


Q ss_pred             CCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEec
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g  135 (410)
                      +.+  .+...+.+.|+|+.|+.+.....++.. +.+.++++||.+
T Consensus        58 ~~~--~~~~~~~~vD~Vf~alP~~~~~~~v~~-a~~aG~~VID~S   99 (343)
T PRK00436         58 LEP--LDPEILAGADVVFLALPHGVSMDLAPQ-LLEAGVKVIDLS   99 (343)
T ss_pred             eec--CCHHHhcCCCEEEECCCcHHHHHHHHH-HHhCCCEEEECC
Confidence            111  111245779999999988655555444 556899999865

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=89.10  E-value=1.8  Score=41.36  Aligned_cols=30  Identities=27%  Similarity=0.528  Sum_probs=25.2

Q ss_pred             cEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           14 KVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        14 ~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ||+|.| .|.+|..+++.|...|. ++++++.
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~-~v~~~~r   31 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGR-VVVALTS   31 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCC-EEEEeCC
Confidence            589998 59999999999999885 5777664

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=89.08  E-value=6.1  Score=36.58  Aligned_cols=95  Identities=20%  Similarity=0.321  Sum_probs=58.4

Q ss_pred             EEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCCC
Q 015243           15 VLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD   93 (410)
Q Consensus        15 VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~   93 (410)
                      |+|+|+ |.+|..++..|...|.. ++++               .|..     +. ...+.++.  +.+++.  ..+..+
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~-V~~l---------------~R~~-----~~-~~~~~l~~--~g~~vv--~~d~~~   54 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFS-VRAL---------------VRDP-----SS-DRAQQLQA--LGAEVV--EADYDD   54 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGC-EEEE---------------ESSS-----HH-HHHHHHHH--TTTEEE--ES-TT-
T ss_pred             CEEECCccHHHHHHHHHHHhCCCC-cEEE---------------Eecc-----ch-hhhhhhhc--ccceEe--ecccCC
Confidence            789996 99999999999996655 4442               1221     11 22333443  245543  444544


Q ss_pred             CcchHhhhccCcEEEEccCC-----hHHHHHHHHHHHHCCCcEEEec
Q 015243           94 PKFNVEFFKQFNVVLNGLDN-----LDARRHVNRLCLAADVPLVESG  135 (410)
Q Consensus        94 ~~~~~~~~~~~DvVi~a~Dn-----~~~r~~i~~~c~~~~~p~i~~g  135 (410)
                      ...-...++++|.|+.++..     .+....+-+.|.+.++..+--+
T Consensus        55 ~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~s  101 (233)
T PF05368_consen   55 PESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPS  101 (233)
T ss_dssp             HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEES
T ss_pred             HHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEE
Confidence            33445678999999998872     2344556777888888766443

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK08324 short chain dehydrogenase; Validated

Probab=89.06  E-value=3  Score=45.68  Aligned_cols=34  Identities=38%  Similarity=0.591  Sum_probs=28.9

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +.+++|+|.| .|+||..+++.|+..|. ++.++|.
T Consensus       420 l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r  454 (681)
T PRK08324        420 LAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADL  454 (681)
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeC
Confidence            3457899999 59999999999999997 6888874

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=88.98  E-value=1.4  Score=44.17  Aligned_cols=100  Identities=15%  Similarity=0.217  Sum_probs=57.7

Q ss_pred             hCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHH-----HHhhCCCCeE
Q 015243           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDA-----VLKFRPQMSI   84 (410)
Q Consensus        11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~-----l~~~np~v~i   84 (410)
                      +..||+|+| .|-+|.++++.|.....-+++.+..+              .++.|++-..+. ..     +..-..++.+
T Consensus         2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s--------------~~~~G~~~~~~~-~~~~~~~~~~~~~~~~v   66 (349)
T PRK08664          2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTALAAS--------------ERSAGKTYGEAV-RWQLDGPIPEEVADMEV   66 (349)
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcC--------------hhhcCCcccccc-cccccccccccccceEE
Confidence            347999998 79999999999997666677776321              223333221110 00     0000001112


Q ss_pred             EEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEec
Q 015243           85 TAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (410)
Q Consensus        85 ~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g  135 (410)
                      ...         +.+-+.++|+|+.|+..-.+..++ ......++.+|+.+
T Consensus        67 ~~~---------~~~~~~~~DvVf~a~p~~~s~~~~-~~~~~~G~~vIDls  107 (349)
T PRK08664         67 VST---------DPEAVDDVDIVFSALPSDVAGEVE-EEFAKAGKPVFSNA  107 (349)
T ss_pred             EeC---------CHHHhcCCCEEEEeCChhHHHHHH-HHHHHCCCEEEECC
Confidence            111         122347899999998876665555 45566788888754

>PRK13529 malate dehydrogenase; Provisional

Probab=88.96  E-value=2.8  Score=44.54  Aligned_cols=113  Identities=13%  Similarity=0.264  Sum_probs=66.6

Q ss_pred             HHHhCCcEEEECCcHHHHHHHHHHHH----hCC------CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh
Q 015243            8 EAIKGAKVLMVGAGGIGCELLKTLAL----SGF------QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK   77 (410)
Q Consensus         8 ~~L~~~~VlvvG~GgiG~ev~knLa~----~Gv------~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~   77 (410)
                      .+|.+.||+++|+|+.|.-+++.|+.    .|+      ++|.++|.+-+=.+.  |      .|+...|..-++.    
T Consensus       291 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~--r------~~l~~~k~~fa~~----  358 (563)
T PRK13529        291 EPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDD--M------PDLLDFQKPYARK----  358 (563)
T ss_pred             CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCC--C------CcchHHHHHHhhh----
Confidence            46889999999999999999999997    599      589999977532211  1      1233334333322    


Q ss_pred             hCCCCeEEEEccCCCCCcchHhhhccC--cEEEEccC--ChHHHHHHHHHHHHCCCcEEEecc
Q 015243           78 FRPQMSITAHHANVKDPKFNVEFFKQF--NVVLNGLD--NLDARRHVNRLCLAADVPLVESGT  136 (410)
Q Consensus        78 ~np~v~i~~~~~~i~~~~~~~~~~~~~--DvVi~a~D--n~~~r~~i~~~c~~~~~p~i~~g~  136 (410)
                      .++.   ...... ....-..+.++..  |++|.+..  +.-....+..|+.....|+|.+-+
T Consensus       359 ~~~~---~~~~~~-~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS  417 (563)
T PRK13529        359 REEL---ADWDTE-GDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLS  417 (563)
T ss_pred             cccc---cccccc-cCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC
Confidence            1211   000000 0001123445555  77777543  334566777777777788887643

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=88.96  E-value=1.9  Score=40.52  Aligned_cols=35  Identities=26%  Similarity=0.416  Sum_probs=29.1

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +|.+++|+|.| .|+||..+++.|+..|.. +.+++.
T Consensus        12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~   47 (258)
T PRK06935         12 SLDGKVAIVTGGNTGLGQGYAVALAKAGAD-IIITTH   47 (258)
T ss_pred             cCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            46788999998 589999999999999975 666553

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=88.95  E-value=2.6  Score=45.81  Aligned_cols=96  Identities=17%  Similarity=0.276  Sum_probs=54.0

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchH--HHHHHHHHHhhCCCCeEEEEc
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK--AKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~K--a~~a~~~l~~~np~v~i~~~~   88 (410)
                      ..++|+|||+|..|-..+..|++.|.. ++++|...-    +.-..-|.-...-.+|  .+...+.++++  ++++....
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~-Vtv~e~~~~----~GG~l~~gip~~~l~~~~~~~~~~~~~~~--Gv~~~~~~  381 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQ-VDVFDRHPE----IGGMLTFGIPPFKLDKTVLSQRREIFTAM--GIDFHLNC  381 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCc-EEEEeCCCC----CCCeeeccCCcccCCHHHHHHHHHHHHHC--CeEEEcCC
Confidence            478999999999999999999999984 899885532    1111111111111122  22223344444  33433221


Q ss_pred             cCCCCCcchHhhhccCcEEEEccCCh
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLDNL  114 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~  114 (410)
                       .+.......+....||.|+.|+...
T Consensus       382 -~v~~~~~~~~l~~~~DaV~latGa~  406 (639)
T PRK12809        382 -EIGRDITFSDLTSEYDAVFIGVGTY  406 (639)
T ss_pred             -ccCCcCCHHHHHhcCCEEEEeCCCC
Confidence             1211111224456899999988754

>PRK07856 short chain dehydrogenase; Provisional

Probab=88.94  E-value=0.95  Score=42.49  Aligned_cols=36  Identities=22%  Similarity=0.473  Sum_probs=30.2

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      +.+++++|.| .|+||.++++.|+..|. ++.++|.+.
T Consensus         4 ~~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~   40 (252)
T PRK07856          4 LTGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRA   40 (252)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCh
Confidence            5678999998 57999999999999997 577877653

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=88.94  E-value=0.59  Score=40.40  Aligned_cols=28  Identities=32%  Similarity=0.684  Sum_probs=24.6

Q ss_pred             EEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           15 VLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        15 VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      |+|+|+|++|+.++-.|...|.. +++++
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~-V~l~~   28 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHD-VTLVS   28 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CEEECcCHHHHHHHHHHHHCCCc-eEEEE
Confidence            78999999999999999997765 77765

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=88.80  E-value=0.64  Score=46.50  Aligned_cols=41  Identities=20%  Similarity=0.298  Sum_probs=36.2

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNL   52 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL   52 (410)
                      .+.+|+|||.|-+|+.+|..|++.|. +++++|.+.+...+-
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~g~s   43 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGGGAA   43 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCCcch
Confidence            46789999999999999999999999 899999888865443

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=88.77  E-value=2.2  Score=39.91  Aligned_cols=34  Identities=41%  Similarity=0.588  Sum_probs=28.2

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      .|.+++++|.| .|+||..+++.|+..|. ++.++|
T Consensus         6 ~l~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~   40 (254)
T PRK08085          6 SLAGKNILITGSAQGIGFLLATGLAEYGA-EIIIND   40 (254)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEc
Confidence            35678899998 68999999999999996 566665

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=88.77  E-value=1.9  Score=42.11  Aligned_cols=31  Identities=26%  Similarity=0.512  Sum_probs=27.3

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +|.+||+|-+|..++.+|...|. ++++.|.+
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~   32 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIG   32 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            69999999999999999999996 57787754

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=88.74  E-value=0.49  Score=48.01  Aligned_cols=35  Identities=26%  Similarity=0.417  Sum_probs=30.8

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .|.+++|.|||+|.||..+++.|...|+. +...|+
T Consensus       113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~~-V~~~dp  147 (378)
T PRK15438        113 SLHDRTVGIVGVGNVGRRLQARLEALGIK-TLLCDP  147 (378)
T ss_pred             CcCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECC
Confidence            47899999999999999999999999975 666674

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=88.74  E-value=1.8  Score=40.98  Aligned_cols=34  Identities=35%  Similarity=0.529  Sum_probs=28.2

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      ++.+++++|.| .|++|.++++.|+..|.. +.++|
T Consensus         7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~-vv~~~   41 (265)
T PRK07097          7 SLKGKIALITGASYGIGFAIAKAYAKAGAT-IVFND   41 (265)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEe
Confidence            45678899998 589999999999999976 66655

>PRK06114 short chain dehydrogenase; Provisional

Probab=88.73  E-value=2.1  Score=40.17  Aligned_cols=35  Identities=29%  Similarity=0.582  Sum_probs=29.0

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .+.++.++|.| .||||.++++.|+..|. ++.++|.
T Consensus         5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r   40 (254)
T PRK06114          5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDL   40 (254)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            36778899987 77999999999999997 5667664

>PRK12746 short chain dehydrogenase; Provisional

Probab=88.67  E-value=1.3  Score=41.47  Aligned_cols=29  Identities=31%  Similarity=0.478  Sum_probs=25.4

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQ   37 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~   37 (410)
                      ++++++++|.| .|++|.++++.|+..|..
T Consensus         3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~   32 (254)
T PRK12746          3 NLDGKVALVTGASRGIGRAIAMRLANDGAL   32 (254)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCE
Confidence            46678999998 789999999999998864

>PTZ00188 adrenodoxin reductase; Provisional

Probab=88.67  E-value=3.5  Score=43.35  Aligned_cols=97  Identities=18%  Similarity=0.108  Sum_probs=55.5

Q ss_pred             hCCcEEEECCcHHHHHHHHHHH-HhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh--hCCCCeEEEE
Q 015243           11 KGAKVLMVGAGGIGCELLKTLA-LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK--FRPQMSITAH   87 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa-~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~--~np~v~i~~~   87 (410)
                      ..++|+|||+|.-|++.|..|+ ..|.. ++|+|....--.-+ |.-. -+++   ++...+.+.+.+  .++.++... 
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~-VtlfEk~p~pgGLv-R~GV-aPdh---~~~k~v~~~f~~~~~~~~v~f~g-  110 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVK-VDIFEKLPNPYGLI-RYGV-APDH---IHVKNTYKTFDPVFLSPNYRFFG-  110 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCe-EEEEecCCCCccEE-EEeC-CCCC---ccHHHHHHHHHHHHhhCCeEEEe-
Confidence            3578999999999999999765 56654 89988655443322 2211 1222   222222233222  234544431 


Q ss_pred             ccCCCCCcchHhhhccCcEEEEccCCh
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGLDNL  114 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn~  114 (410)
                      .-.+..+.-.+++...||.||.|+...
T Consensus       111 nv~VG~Dvt~eeL~~~YDAVIlAtGA~  137 (506)
T PTZ00188        111 NVHVGVDLKMEELRNHYNCVIFCCGAS  137 (506)
T ss_pred             eeEecCccCHHHHHhcCCEEEEEcCCC
Confidence            222222222345667999999998754

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=88.63  E-value=5.1  Score=40.06  Aligned_cols=72  Identities=18%  Similarity=0.271  Sum_probs=46.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      ..+|+|+|+||+|.-.++....+| .+++.+|                   ++..|.+.+++.-.    +.-|.+...+ 
T Consensus       167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~-------------------~~~~K~e~a~~lGA----d~~i~~~~~~-  221 (339)
T COG1064         167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAIT-------------------RSEEKLELAKKLGA----DHVINSSDSD-  221 (339)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEe-------------------CChHHHHHHHHhCC----cEEEEcCCch-
Confidence            578999999999998888888899 7788776                   45567666555422    2222221111 


Q ss_pred             CCCcchHhhhccCcEEEEccC
Q 015243           92 KDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        92 ~~~~~~~~~~~~~DvVi~a~D  112 (410)
                          .....-+.+|+|+++..
T Consensus       222 ----~~~~~~~~~d~ii~tv~  238 (339)
T COG1064         222 ----ALEAVKEIADAIIDTVG  238 (339)
T ss_pred             ----hhHHhHhhCcEEEECCC
Confidence                11122233999999887

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=88.63  E-value=1.4  Score=43.82  Aligned_cols=89  Identities=20%  Similarity=0.267  Sum_probs=56.9

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCC-cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~-~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .+.++++.|+|.|.||.++++.+.  |+| ++...|...-                  ++.+.      ..+    ..  
T Consensus       143 ~l~gktvGIiG~GrIG~avA~r~~--~Fgm~v~y~~~~~~------------------~~~~~------~~~----~~--  190 (324)
T COG1052         143 DLRGKTLGIIGLGRIGQAVARRLK--GFGMKVLYYDRSPN------------------PEAEK------ELG----AR--  190 (324)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHh--cCCCEEEEECCCCC------------------hHHHh------hcC----ce--
Confidence            578999999999999999999999  665 3444442111                  11110      000    00  


Q ss_pred             ccCCCCCcchHhhhccCcEEEE-ccCChHHHHHHHHHHHHCCC---cEEEec
Q 015243           88 HANVKDPKFNVEFFKQFNVVLN-GLDNLDARRHVNRLCLAADV---PLVESG  135 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~-a~Dn~~~r~~i~~~c~~~~~---p~i~~g  135 (410)
                        .+   . .++.++++|+|+. |-.+.+++..+|+.-.+.-+   -+|+.+
T Consensus       191 --y~---~-l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNta  236 (324)
T COG1052         191 --YV---D-LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTA  236 (324)
T ss_pred             --ec---c-HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECC
Confidence              11   1 3578899999877 45677889888887665433   355554

>PLN00198 anthocyanidin reductase; Provisional

Probab=88.61  E-value=4.2  Score=40.01  Aligned_cols=35  Identities=20%  Similarity=0.325  Sum_probs=28.0

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +++++|+|.| +|.||+.+++.|+..|. ++.+++.|
T Consensus         7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~-~V~~~~r~   42 (338)
T PLN00198          7 TGKKTACVIGGTGFLASLLIKLLLQKGY-AVNTTVRD   42 (338)
T ss_pred             CCCCeEEEECCchHHHHHHHHHHHHCCC-EEEEEECC
Confidence            3568899998 88999999999999986 46555433

>PRK07677 short chain dehydrogenase; Provisional

Probab=88.60  E-value=1.9  Score=40.37  Aligned_cols=33  Identities=24%  Similarity=0.431  Sum_probs=27.3

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +++++|.| .||+|..+++.|+..|. ++.++|.+
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~   34 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRT   34 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            36788887 57899999999999998 68887744

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=88.58  E-value=2.3  Score=41.28  Aligned_cols=31  Identities=29%  Similarity=0.472  Sum_probs=26.8

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .+|.|||+|.+|..++++|+..|.. +.+.|.
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~-v~~~d~   33 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYS-LVVYDR   33 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCe-EEEEcC
Confidence            4799999999999999999999864 667664

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=88.57  E-value=0.55  Score=46.93  Aligned_cols=35  Identities=23%  Similarity=0.262  Sum_probs=31.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCcc
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTI   47 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~V   47 (410)
                      ...|+|||+|.+|+.+|..|++.|. +++|+|.+..
T Consensus         3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~   37 (376)
T PRK11259          3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP   37 (376)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence            4579999999999999999999996 6999998764

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=88.54  E-value=2.1  Score=39.80  Aligned_cols=132  Identities=17%  Similarity=0.119  Sum_probs=76.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEe-------------------------------------------------
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIID-------------------------------------------------   43 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD-------------------------------------------------   43 (410)
                      +++.|+|.|-+|+.++..|+..|.. +++.-                                                 
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~e-V~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~v~~~l   80 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHE-VIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPDVLAEL   80 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCe-EEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHhHHHHH
Confidence            5789999999999999999999853 33320                                                 


Q ss_pred             ------CCccCcccCccccCCCCCCCCc-hHHHHHHHHHHhhCCCCeEEEEccCCCCCcchHhhhccCc-EEEEccCChH
Q 015243           44 ------MDTIEVSNLNRQFLFRQSHVGQ-SKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFN-VVLNGLDNLD  115 (410)
Q Consensus        44 ------~D~Ve~sNL~Rq~lf~~~diG~-~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~~D-vVi~a~Dn~~  115 (410)
                            -=.|+.+|---- .+...+.+. +-...+++.+.+.-|+.+|..-...+.-..+...--...+ .|..|.|+.+
T Consensus        81 ~~~~~~KIvID~tnp~~~-~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~~~~~v~vagDD~~  159 (211)
T COG2085          81 RDALGGKIVIDATNPIEV-NGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPGGRRDVLVAGDDAE  159 (211)
T ss_pred             HHHhCCeEEEecCCCccc-cCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcCCceeEEEecCcHH
Confidence                  111223331000 133334432 2233456667777777654332222211100000011122 2455778899


Q ss_pred             HHHHHHHHHHHCCCcEEEecccCccceEEEE
Q 015243          116 ARRHVNRLCLAADVPLVESGTTGFLGQVTVH  146 (410)
Q Consensus       116 ~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~  146 (410)
                      ++..+-+++.+.+.--+++|..-....+...
T Consensus       160 Ak~~v~~L~~~iG~~~ld~G~L~~a~~le~~  190 (211)
T COG2085         160 AKAVVAELAEDIGFRPLDAGPLENARILEPG  190 (211)
T ss_pred             HHHHHHHHHHhcCcceeeccccccccccccc
Confidence            9999999999999989999887666555443

>PRK07890 short chain dehydrogenase; Provisional

Probab=88.50  E-value=1.9  Score=40.33  Aligned_cols=33  Identities=30%  Similarity=0.489  Sum_probs=28.6

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      |.+++|+|.| .|+||..+++.|+.-|. ++.++|
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~   36 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAA   36 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEe
Confidence            5678999998 58999999999999997 577876

>PRK05717 oxidoreductase; Validated

Probab=88.49  E-value=1.6  Score=41.08  Aligned_cols=35  Identities=31%  Similarity=0.551  Sum_probs=29.4

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +++++|+|.| .|+||.++++.|+..|. ++.++|.+
T Consensus         8 ~~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~   43 (255)
T PRK05717          8 HNGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLD   43 (255)
T ss_pred             cCCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCC
Confidence            5678899998 58999999999999996 57887743

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=88.48  E-value=2.2  Score=39.87  Aligned_cols=31  Identities=19%  Similarity=0.333  Sum_probs=26.0

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ++|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~-~V~~~~r   32 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGH-KVIATGR   32 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC-EEEEEEC
Confidence            3688998 58999999999999997 4777764

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=88.43  E-value=2.5  Score=42.22  Aligned_cols=90  Identities=18%  Similarity=0.318  Sum_probs=54.4

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCcEE--EEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           13 AKVLMVGA-GGIGCELLKTLALSGFQDIH--IIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        13 ~~VlvvG~-GgiG~ev~knLa~~Gv~~i~--liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      .+|+|+|+ |-+|.|+++.|...+.-...  .+-               +.+..|++=.      +.  .-+..++    
T Consensus         5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~---------------s~~~aG~~l~------~~--~~~l~~~----   57 (336)
T PRK05671          5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLA---------------SSESAGHSVP------FA--GKNLRVR----   57 (336)
T ss_pred             CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEE---------------CcccCCCeec------cC--CcceEEe----
Confidence            68999995 89999999999976654333  332               2233454310      00  0011221    


Q ss_pred             CCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEec
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g  135 (410)
                      ...    ..+ ++++|+|+.|+.+..++.++.+ +.+.++.+||.+
T Consensus        58 ~~~----~~~-~~~vD~vFla~p~~~s~~~v~~-~~~~G~~VIDlS   97 (336)
T PRK05671         58 EVD----SFD-FSQVQLAFFAAGAAVSRSFAEK-ARAAGCSVIDLS   97 (336)
T ss_pred             eCC----hHH-hcCCCEEEEcCCHHHHHHHHHH-HHHCCCeEEECc
Confidence            111    123 4889999999987656665444 466789999854

>TIGR00518 alaDH alanine dehydrogenase

Probab=88.43  E-value=0.61  Score=47.22  Aligned_cols=35  Identities=23%  Similarity=0.452  Sum_probs=31.3

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +...+|+|+|+|.+|..+++.+..+|+ +++++|.+
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~  199 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN  199 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence            466889999999999999999999998 59999854

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=88.38  E-value=1.6  Score=42.83  Aligned_cols=33  Identities=33%  Similarity=0.406  Sum_probs=29.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ..+|+|.|+|++|..++..+..+|..+++.+|.
T Consensus       164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~  196 (339)
T cd08239         164 RDTVLVVGAGPVGLGALMLARALGAEDVIGVDP  196 (339)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            679999999999999999999999887877763

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PLN02494 adenosylhomocysteinase

Probab=88.37  E-value=0.63  Score=48.43  Aligned_cols=37  Identities=22%  Similarity=0.460  Sum_probs=32.5

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCcc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTI   47 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~V   47 (410)
                      +.+++|+|+|+|.+|..+++.+...|+ +++++|.|..
T Consensus       252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~  288 (477)
T PLN02494        252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPI  288 (477)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch
Confidence            578999999999999999999999998 5888886643

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=88.30  E-value=2.1  Score=46.95  Aligned_cols=33  Identities=33%  Similarity=0.555  Sum_probs=27.6

Q ss_pred             hCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .+++|+|.| .|+||.++++.|+..|. ++.++|.
T Consensus       413 ~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r  446 (676)
T TIGR02632       413 ARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADL  446 (676)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeC
Confidence            457788888 58999999999999997 5777763

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=88.23  E-value=1.9  Score=43.19  Aligned_cols=32  Identities=31%  Similarity=0.549  Sum_probs=28.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      ..+|+|.|+|++|..++..+...|..++..+|
T Consensus       192 g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~  223 (371)
T cd08281         192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVD  223 (371)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEc
Confidence            56899999999999998888889998888876

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=88.22  E-value=0.68  Score=45.58  Aligned_cols=32  Identities=28%  Similarity=0.471  Sum_probs=29.6

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .+|.|||+|-+|+.++-.|+..|.+.+.++|.
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi   33 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV   33 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence            58999999999999999999999878999995

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=88.22  E-value=3  Score=41.82  Aligned_cols=91  Identities=15%  Similarity=0.296  Sum_probs=56.3

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCC--cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQ--DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~--~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      ..||+|+| .|.+|.|+++.|...+.-  ++..+.               .....|+.=..        ...++.+.   
T Consensus         7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~la---------------s~rsaGk~~~~--------~~~~~~v~---   60 (344)
T PLN02383          7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLA---------------SARSAGKKVTF--------EGRDYTVE---   60 (344)
T ss_pred             CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEE---------------ccCCCCCeeee--------cCceeEEE---
Confidence            56899999 688999999999986654  444432               22233332111        01111111   


Q ss_pred             cCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEec
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g  135 (410)
                       .+     ..+-+.++|+||.|+.+-.++.+..++ .+.+..+||.+
T Consensus        61 -~~-----~~~~~~~~D~vf~a~p~~~s~~~~~~~-~~~g~~VIDlS  100 (344)
T PLN02383         61 -EL-----TEDSFDGVDIALFSAGGSISKKFGPIA-VDKGAVVVDNS  100 (344)
T ss_pred             -eC-----CHHHHcCCCEEEECCCcHHHHHHHHHH-HhCCCEEEECC
Confidence             11     112347899999999887777776654 45688899854

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=88.21  E-value=1.5  Score=43.04  Aligned_cols=68  Identities=21%  Similarity=0.293  Sum_probs=45.5

Q ss_pred             EECCcHHHHHHHHHHHHhCC-CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC----CCCeEEEEccCC
Q 015243           17 MVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR----PQMSITAHHANV   91 (410)
Q Consensus        17 vvG~GgiG~ev~knLa~~Gv-~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~n----p~v~i~~~~~~i   91 (410)
                      |||+|.+|+.++-.|+..|+ ++|.|+|-                   -..|++..+.-|....    .++++..  .  
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di-------------------~~~~~~g~a~Dl~~~~~~~~~~~~i~~--~--   57 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDI-------------------NKDKAEGEAMDLQHAASFLPTPKKIRS--G--   57 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CCChhhHHHHHHHHhhcccCCCeEEec--C--
Confidence            68999999999999999998 57999983                   1233444444444433    2233331  1  


Q ss_pred             CCCcchHhhhccCcEEEEccC
Q 015243           92 KDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        92 ~~~~~~~~~~~~~DvVi~a~D  112 (410)
                           +.+-++++|+||.+..
T Consensus        58 -----~~~~~~daDivVitag   73 (299)
T TIGR01771        58 -----DYSDCKDADLVVITAG   73 (299)
T ss_pred             -----CHHHHCCCCEEEECCC
Confidence                 2356799999998654

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=88.20  E-value=0.66  Score=47.14  Aligned_cols=33  Identities=24%  Similarity=0.492  Sum_probs=30.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      ++|+|||+|-+|+.+|..|++.|. +++|+|.+.
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence            589999999999999999999996 699999876

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=88.19  E-value=2  Score=42.95  Aligned_cols=91  Identities=19%  Similarity=0.320  Sum_probs=55.2

Q ss_pred             cEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCC
Q 015243           14 KVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (410)
Q Consensus        14 ~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~   92 (410)
                      +|+||| .|.+|.++++.|...|...+.|+=             +.+..+.|+.=.         . .+..+  ...++.
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~-------------~as~~~~g~~~~---------~-~~~~~--~~~~~~   55 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVL-------------LASDRSAGRKVT---------F-KGKEL--EVNEAK   55 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEE-------------EeccccCCCeee---------e-CCeeE--EEEeCC
Confidence            689999 799999999999987665333321             123333443211         0 11111  111221


Q ss_pred             CCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEec
Q 015243           93 DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (410)
Q Consensus        93 ~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g  135 (410)
                           ..-+.++|+|+.|+.+..++.+..+. .+.+..+|+.+
T Consensus        56 -----~~~~~~~D~v~~a~g~~~s~~~a~~~-~~~G~~VID~s   92 (339)
T TIGR01296        56 -----IESFEGIDIALFSAGGSVSKEFAPKA-AKCGAIVIDNT   92 (339)
T ss_pred             -----hHHhcCCCEEEECCCHHHHHHHHHHH-HHCCCEEEECC
Confidence                 12348999999999988777776554 45677888765

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=88.19  E-value=0.74  Score=44.95  Aligned_cols=35  Identities=26%  Similarity=0.429  Sum_probs=31.4

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCc
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEV   49 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~   49 (410)
                      .|+|||+|-+|+.+|..|++.|. +++|+|.+.+..
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~~~   35 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDIGS   35 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSSTTS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-eEEEEeeccccc
Confidence            48999999999999999999998 799999996543

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=88.17  E-value=0.66  Score=48.32  Aligned_cols=37  Identities=24%  Similarity=0.419  Sum_probs=32.5

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      .|.+++|+|+|+|.+|..+++.|...|. +++++|.|.
T Consensus       251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp  287 (476)
T PTZ00075        251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDP  287 (476)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            4789999999999999999999999998 588887553

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=88.11  E-value=2.2  Score=40.80  Aligned_cols=32  Identities=25%  Similarity=0.311  Sum_probs=29.1

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      +|+|||+|..|.+.|..|.+.|.. ++|+|...
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~g~~-v~lie~~~   33 (300)
T TIGR01292         2 DVIIIGAGPAGLTAAIYAARANLK-TLIIEGME   33 (300)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCC-EEEEeccC
Confidence            689999999999999999999976 99999754

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=88.08  E-value=1.9  Score=40.46  Aligned_cols=34  Identities=29%  Similarity=0.539  Sum_probs=28.8

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      +|.+++|+|.| .|+||..+++.|+..|.. +.++|
T Consensus         8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~-vv~~~   42 (255)
T PRK06113          8 RLDGKCAIITGAGAGIGKEIAITFATAGAS-VVVSD   42 (255)
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEe
Confidence            47789999997 789999999999999975 56655

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=88.05  E-value=1.6  Score=43.59  Aligned_cols=33  Identities=33%  Similarity=0.635  Sum_probs=28.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +.+|+|.|+|++|..++......|+.++..+|.
T Consensus       177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~  209 (358)
T TIGR03451       177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDI  209 (358)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            678999999999999998888899887888764

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=88.05  E-value=1.7  Score=44.90  Aligned_cols=96  Identities=17%  Similarity=0.191  Sum_probs=51.8

Q ss_pred             CcEEEECCcHHHHHHHH--HHHHh-CC--CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243           13 AKVLMVGAGGIGCELLK--TLALS-GF--QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~k--nLa~~-Gv--~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .+|.|||+|++|...+-  .++.. +.  .++.|+|.|.   .-+.+            -...+.+.+....+..+|...
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~---e~l~~------------~~~~~~~~~~~~~~~~~I~~t   65 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDE---ERLET------------VEILAKKIVEELGAPLKIEAT   65 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCH---HHHHH------------HHHHHHHHHHhcCCCeEEEEe
Confidence            37999999999997554  45422 33  4799988433   11110            011123333334444455432


Q ss_pred             ccCCCCCcchHhhhccCcEEEEccCC--hHHHHHHHHHHHHCCCc
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGLDN--LDARRHVNRLCLAADVP  130 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn--~~~r~~i~~~c~~~~~p  130 (410)
                      .+       -.+-++++|+||.+.-.  .+.+..-.+...++++-
T Consensus        66 tD-------~~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~  103 (423)
T cd05297          66 TD-------RREALDGADFVINTIQVGGHEYTETDFEIPEKYGYY  103 (423)
T ss_pred             CC-------HHHHhcCCCEEEEeeEecCccchhhhhhhHHHcCee
Confidence            21       13457899999998743  22333223466777664

linked to 3D####ucture

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=88.02  E-value=3  Score=40.56  Aligned_cols=80  Identities=19%  Similarity=0.160  Sum_probs=47.1

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      +++|+|.| +|.||+.+++.|...|.. +++++.+....              .  +...+. .+....+  +++....+
T Consensus         4 ~~~ilVtGatGfIG~~l~~~L~~~g~~-V~~~~r~~~~~--------------~--~~~~~~-~~~~~~~--~~~~~~~D   63 (322)
T PLN02662          4 GKVVCVTGASGYIASWLVKLLLQRGYT-VKATVRDPNDP--------------K--KTEHLL-ALDGAKE--RLHLFKAN   63 (322)
T ss_pred             CCEEEEECChHHHHHHHHHHHHHCCCE-EEEEEcCCCch--------------h--hHHHHH-hccCCCC--ceEEEecc
Confidence            57899998 699999999999999874 65555432110              0  000000 0001122  44555666


Q ss_pred             CCCCcchHhhhccCcEEEEcc
Q 015243           91 VKDPKFNVEFFKQFNVVLNGL  111 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~  111 (410)
                      +.+...-...++++|+||.+.
T Consensus        64 l~~~~~~~~~~~~~d~Vih~A   84 (322)
T PLN02662         64 LLEEGSFDSVVDGCEGVFHTA   84 (322)
T ss_pred             ccCcchHHHHHcCCCEEEEeC
Confidence            654433445678889988854

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=87.99  E-value=0.59  Score=47.54  Aligned_cols=35  Identities=26%  Similarity=0.432  Sum_probs=31.0

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .|.+++|.|||+|.+|..+++.|...|+. +...|+
T Consensus       113 ~l~gktvGIIG~G~IG~~va~~l~a~G~~-V~~~Dp  147 (381)
T PRK00257        113 DLAERTYGVVGAGHVGGRLVRVLRGLGWK-VLVCDP  147 (381)
T ss_pred             CcCcCEEEEECCCHHHHHHHHHHHHCCCE-EEEECC
Confidence            57889999999999999999999999985 667774

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=87.89  E-value=1.5  Score=43.11  Aligned_cols=77  Identities=10%  Similarity=0.242  Sum_probs=54.9

Q ss_pred             HHhCCcEEEECCc-HHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVGAG-GIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG~G-giG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .+.+++|.|||.| -+|..++.+|...|. .+++.+..+-                                        
T Consensus       156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga-tVtv~~~~t~----------------------------------------  194 (301)
T PRK14194        156 DLTGKHAVVIGRSNIVGKPMAALLLQAHC-SVTVVHSRST----------------------------------------  194 (301)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEECCCCC----------------------------------------
Confidence            4789999999996 999999999999985 4777653210                                        


Q ss_pred             ccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEeccc
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT  137 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~  137 (410)
                              ...+..+++|+||.++.....   +..-..+-+.-+|+.|+.
T Consensus       195 --------~l~e~~~~ADIVIsavg~~~~---v~~~~ik~GaiVIDvgin  233 (301)
T PRK14194        195 --------DAKALCRQADIVVAAVGRPRL---IDADWLKPGAVVIDVGIN  233 (301)
T ss_pred             --------CHHHHHhcCCEEEEecCChhc---ccHhhccCCcEEEEeccc
Confidence                    023556789999999876542   223335667778888754

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=87.89  E-value=2.4  Score=48.33  Aligned_cols=96  Identities=16%  Similarity=0.186  Sum_probs=55.8

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC-CCCeEEEEcc
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR-PQMSITAHHA   89 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~n-p~v~i~~~~~   89 (410)
                      .+++|+|||+|.-|...|..|++.|.. ++|+|...    .+.=+.-|.-.+.-.+| +++.+.+..+. -++++.... 
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~-VtVfE~~~----~~GG~l~yGIP~~rlp~-~vi~~~i~~l~~~Gv~f~~n~-  377 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFP-VTVFEAFH----DLGGVLRYGIPEFRLPN-QLIDDVVEKIKLLGGRFVKNF-  377 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCe-EEEEeeCC----CCCceEEccCCCCcChH-HHHHHHHHHHHhhcCeEEEeE-
Confidence            479999999999999999999999975 99998542    22322223333333344 33333333322 134443221 


Q ss_pred             CCCCCcchHhhhc-cCcEEEEccCC
Q 015243           90 NVKDPKFNVEFFK-QFNVVLNGLDN  113 (410)
Q Consensus        90 ~i~~~~~~~~~~~-~~DvVi~a~Dn  113 (410)
                      .+......+++.+ +||.||.|+..
T Consensus       378 ~vG~dit~~~l~~~~yDAV~LAtGA  402 (944)
T PRK12779        378 VVGKTATLEDLKAAGFWKIFVGTGA  402 (944)
T ss_pred             EeccEEeHHHhccccCCEEEEeCCC
Confidence            1111111234444 69999998865

>PLN02503 fatty acyl-CoA reductase 2

Probab=87.83  E-value=6.7  Score=42.43  Aligned_cols=133  Identities=16%  Similarity=0.183  Sum_probs=75.8

Q ss_pred             CHHHHHHHhCCcEEEECC-cHHHHHHHHHHHHhC--CCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC
Q 015243            3 SERQLEAIKGAKVLMVGA-GGIGCELLKTLALSG--FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR   79 (410)
Q Consensus         3 g~e~q~~L~~~~VlvvG~-GgiG~ev~knLa~~G--v~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~n   79 (410)
                      |..-++-+++++|+|-|+ |-+|..+++.|.+.+  +++|.++....=..+-..|..       ..-....+-+.+++.+
T Consensus       110 ~~~I~~f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~-------~~l~~~~lf~~l~~~~  182 (605)
T PLN02503        110 GIGIAEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLK-------NEVIDAELFKCLQETH  182 (605)
T ss_pred             CcchhhhhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHH-------HHHhhhhhHHHHHHhc
Confidence            344577889999999996 899999999999864  678887643211111111100       0000001223444444


Q ss_pred             CC-------CeEEEEccCCCCCcc------hHhhhccCcEEEEccCC------hH--------HHHHHHHHHHHCC--Cc
Q 015243           80 PQ-------MSITAHHANVKDPKF------NVEFFKQFNVVLNGLDN------LD--------ARRHVNRLCLAAD--VP  130 (410)
Q Consensus        80 p~-------v~i~~~~~~i~~~~~------~~~~~~~~DvVi~a~Dn------~~--------~r~~i~~~c~~~~--~p  130 (410)
                      |.       -+++.+.+++++..+      ...+.++.|+||.+...      .+        .-..+-++|.+.+  ..
T Consensus       183 g~~~~~~~~~Ki~~v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f~~~~~~a~~vNV~GT~nLLelA~~~~~lk~  262 (605)
T PLN02503        183 GKSYQSFMLSKLVPVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTTFDERYDVAIDINTRGPCHLMSFAKKCKKLKL  262 (605)
T ss_pred             CccccccccccEEEEEeeCCCcccCCCHHHHHHHHhcCCEEEECccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCCe
Confidence            42       368888888876532      12345679999996432      11        1234455665543  46


Q ss_pred             EEEecccCccce
Q 015243          131 LVESGTTGFLGQ  142 (410)
Q Consensus       131 ~i~~g~~G~~G~  142 (410)
                      ++..++...+|.
T Consensus       263 fV~vSTayVyG~  274 (605)
T PLN02503        263 FLQVSTAYVNGQ  274 (605)
T ss_pred             EEEccCceeecC
Confidence            777776544443

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=87.75  E-value=4.4  Score=40.01  Aligned_cols=30  Identities=27%  Similarity=0.475  Sum_probs=24.9

Q ss_pred             cEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           14 KVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        14 ~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      +|+|.| +|.||+.+++.|...|...+..+|
T Consensus         2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~   32 (352)
T PRK10084          2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVD   32 (352)
T ss_pred             eEEEECCCcHHhHHHHHHHHHhCCCeEEEec
Confidence            789998 599999999999999876555555

>PRK06523 short chain dehydrogenase; Provisional

Probab=87.71  E-value=1.8  Score=40.72  Aligned_cols=37  Identities=22%  Similarity=0.414  Sum_probs=31.4

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      ++.+++|+|.| .||||.++++.|+..|.. +.+++.+.
T Consensus         6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~r~~   43 (260)
T PRK06523          6 ELAGKRALVTGGTKGIGAATVARLLEAGAR-VVTTARSR   43 (260)
T ss_pred             CCCCCEEEEECCCCchhHHHHHHHHHCCCE-EEEEeCCh
Confidence            46788999998 589999999999999974 88887653

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=87.67  E-value=5.6  Score=39.04  Aligned_cols=114  Identities=18%  Similarity=0.307  Sum_probs=62.2

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCC------CCCCCchHHHHHHHHHHhhCCCCeEE
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFR------QSHVGQSKAKVARDAVLKFRPQMSIT   85 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~------~~diG~~Ka~~a~~~l~~~np~v~i~   85 (410)
                      ++|||.| +|=|||.+++.|...|.. +.++|+    .+|=+|..+-+      ..|+.-  .+.+.+.+.+.+|+.-++
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~-vvV~DN----L~~g~~~~v~~~~~~f~~gDi~D--~~~L~~vf~~~~idaViH   73 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGHE-VVVLDN----LSNGHKIALLKLQFKFYEGDLLD--RALLTAVFEENKIDAVVH   73 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCCe-EEEEec----CCCCCHHHhhhccCceEEecccc--HHHHHHHHHhcCCCEEEE
Confidence            4788885 999999999999999976 777772    22222222211      223322  233455555555554333


Q ss_pred             EEcc-CCCCC-cchHhhhccCcEEEEccCChHHHHHHHHHHHHCCC-cEEEecccCccce
Q 015243           86 AHHA-NVKDP-KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADV-PLVESGTTGFLGQ  142 (410)
Q Consensus        86 ~~~~-~i~~~-~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~-p~i~~g~~G~~G~  142 (410)
                      .--. .+.|. .....++..         |.-.-.-+-+.|+++++ .+|.+++...+|.
T Consensus        74 FAa~~~VgESv~~Pl~Yy~N---------Nv~gTl~Ll~am~~~gv~~~vFSStAavYG~  124 (329)
T COG1087          74 FAASISVGESVQNPLKYYDN---------NVVGTLNLIEAMLQTGVKKFIFSSTAAVYGE  124 (329)
T ss_pred             CccccccchhhhCHHHHHhh---------chHhHHHHHHHHHHhCCCEEEEecchhhcCC
Confidence            2111 11111 112233332         33334455566777776 6888888777775

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.67  E-value=2.5  Score=43.71  Aligned_cols=32  Identities=25%  Similarity=0.463  Sum_probs=28.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +..|+|+|.|+.|-.+++.|...|. +++..|.
T Consensus         6 ~~~~~v~G~G~sG~s~a~~L~~~G~-~v~~~D~   37 (448)
T PRK03803          6 DGLHIVVGLGKTGLSVVRFLARQGI-PFAVMDS   37 (448)
T ss_pred             CCeEEEEeecHhHHHHHHHHHhCCC-eEEEEeC
Confidence            4579999999999999999999997 5888884

>TIGR00936 ahcY adenosylhomocysteinase

Probab=87.63  E-value=0.71  Score=47.30  Aligned_cols=36  Identities=22%  Similarity=0.338  Sum_probs=31.8

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      +.+++|+|+|+|.+|..+++.+...|.. ++++|.|.
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~-ViV~d~dp  228 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGMGAR-VIVTEVDP  228 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhCcCE-EEEEeCCh
Confidence            5788999999999999999999999984 88888554

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK06487 glycerate dehydrogenase; Provisional

Probab=87.52  E-value=0.67  Score=45.89  Aligned_cols=85  Identities=15%  Similarity=0.224  Sum_probs=56.6

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      .|.+++|.|+|.|.||.++++.|...|+. +..+|...            .....                   .     
T Consensus       145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm~-V~~~~~~~------------~~~~~-------------------~-----  187 (317)
T PRK06487        145 ELEGKTLGLLGHGELGGAVARLAEAFGMR-VLIGQLPG------------RPARP-------------------D-----  187 (317)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHhhCCCE-EEEECCCC------------Ccccc-------------------c-----
Confidence            58999999999999999999999877874 65555310            00000                   0     


Q ss_pred             cCCCCCcchHhhhccCcEEEEccC-ChHHHHHHHHHHHHC---CCcEEEec
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLD-NLDARRHVNRLCLAA---DVPLVESG  135 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~D-n~~~r~~i~~~c~~~---~~p~i~~g  135 (410)
                       ..    .-+++++++|+|+.++. +.+++..+++.....   +--+|+.+
T Consensus       188 -~~----~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~a  233 (317)
T PRK06487        188 -RL----PLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTA  233 (317)
T ss_pred             -cc----CHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECC
Confidence             00    13477889999988664 567777777765543   33455654

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=87.46  E-value=3.3  Score=41.44  Aligned_cols=38  Identities=13%  Similarity=0.197  Sum_probs=28.3

Q ss_pred             hhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEeccc
Q 015243           99 EFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT  137 (410)
Q Consensus        99 ~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~  137 (410)
                      +.+.++|+|++|+.....+. ....+.++|+++|+.+..
T Consensus        74 el~~~vDVVIdaT~~~~~~e-~a~~~~~aGk~VI~~~~~  111 (341)
T PRK04207         74 DLLEKADIVVDATPGGVGAK-NKELYEKAGVKAIFQGGE  111 (341)
T ss_pred             HhhccCCEEEECCCchhhHH-HHHHHHHCCCEEEEcCCC
Confidence            45578999999997655444 445777889999987753

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=87.42  E-value=1.9  Score=41.78  Aligned_cols=98  Identities=18%  Similarity=0.348  Sum_probs=55.3

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      +||+|+| .|-+|..+.+.|...|.. +..++..              .-|+.  ..+.+.+.+.+..|++-|..-  .+
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~~-v~~~~r~--------------~~dl~--d~~~~~~~~~~~~pd~Vin~a--a~   61 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGYE-VIATSRS--------------DLDLT--DPEAVAKLLEAFKPDVVINCA--AY   61 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSEE-EEEESTT--------------CS-TT--SHHHHHHHHHHH--SEEEE------
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCCE-EEEeCch--------------hcCCC--CHHHHHHHHHHhCCCeEeccc--ee
Confidence            4899999 599999999999987754 3333333              11222  245677777787787554432  11


Q ss_pred             CCCcc---h-HhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccC
Q 015243           92 KDPKF---N-VEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTG  138 (410)
Q Consensus        92 ~~~~~---~-~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G  138 (410)
                      +....   + +..+         .-|..+-..+.+.|...+.++|..++..
T Consensus        62 ~~~~~ce~~p~~a~---------~iN~~~~~~la~~~~~~~~~li~~STd~  103 (286)
T PF04321_consen   62 TNVDACEKNPEEAY---------AINVDATKNLAEACKERGARLIHISTDY  103 (286)
T ss_dssp             --HHHHHHSHHHHH---------HHHTHHHHHHHHHHHHCT-EEEEEEEGG
T ss_pred             ecHHhhhhChhhhH---------HHhhHHHHHHHHHHHHcCCcEEEeeccE
Confidence            10000   0 0000         0133444677889999999999887754

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=87.41  E-value=0.81  Score=47.28  Aligned_cols=32  Identities=28%  Similarity=0.430  Sum_probs=28.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .+|+|||+|-.|||+|..|++.|+. ++|+++.
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~-V~LiE~r   32 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVP-VILYEMR   32 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCc-EEEEecc
Confidence            3799999999999999999999975 8888854

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=87.41  E-value=3.1  Score=41.47  Aligned_cols=90  Identities=17%  Similarity=0.322  Sum_probs=55.3

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCc--EEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQD--IHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~--i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      .||+|+| .|.+|.++++.|...|...  +..+               .+..+.|+.=.         ++ ..++...  
T Consensus         2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l---------------~s~~~~g~~l~---------~~-g~~i~v~--   54 (334)
T PRK14874          2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLL---------------ASARSAGKELS---------FK-GKELKVE--   54 (334)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEE---------------EccccCCCeee---------eC-CceeEEe--
Confidence            5899999 6889999999999876553  3332               12223333210         11 1122211  


Q ss_pred             CCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEec
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g  135 (410)
                      ++.     ..-|+++|+||.|+....++.+..+. ...+..+|+.+
T Consensus        55 d~~-----~~~~~~vDvVf~A~g~g~s~~~~~~~-~~~G~~VIDlS   94 (334)
T PRK14874         55 DLT-----TFDFSGVDIALFSAGGSVSKKYAPKA-AAAGAVVIDNS   94 (334)
T ss_pred             eCC-----HHHHcCCCEEEECCChHHHHHHHHHH-HhCCCEEEECC
Confidence            221     12347899999999888777776665 45677888754

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=87.38  E-value=3.3  Score=41.57  Aligned_cols=91  Identities=16%  Similarity=0.387  Sum_probs=56.6

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHH-hCC--CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243           12 GAKVLMVGA-GGIGCELLKTLAL-SGF--QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus        12 ~~~VlvvG~-GgiG~ev~knLa~-~Gv--~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      +.+|.|||+ |.+|.|+++.|.. ..+  +++.++..               ....|+.=      .+.  ..++.++..
T Consensus         5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS---------------~~saGk~~------~~~--~~~l~v~~~   61 (347)
T PRK06728          5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSS---------------KRSAGKTV------QFK--GREIIIQEA   61 (347)
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEEC---------------cccCCCCe------eeC--CcceEEEeC
Confidence            468999996 8999999999994 554  45665542               23344421      000  011222221


Q ss_pred             ccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEec
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g  135 (410)
                               +.+-++++|+|+.|+++-.++.+... +.+.+.++||.+
T Consensus        62 ---------~~~~~~~~Divf~a~~~~~s~~~~~~-~~~~G~~VID~S   99 (347)
T PRK06728         62 ---------KINSFEGVDIAFFSAGGEVSRQFVNQ-AVSSGAIVIDNT   99 (347)
T ss_pred             ---------CHHHhcCCCEEEECCChHHHHHHHHH-HHHCCCEEEECc
Confidence                     12234789999999987766666555 456789999854

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=87.37  E-value=3.1  Score=40.03  Aligned_cols=22  Identities=41%  Similarity=0.650  Sum_probs=20.2

Q ss_pred             CcEEEECCcHHHHHHHHHHHHh
Q 015243           13 AKVLMVGAGGIGCELLKTLALS   34 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~   34 (410)
                      .||.|+|||.+|..+++.|...
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~   23 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHD   23 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhC
Confidence            4899999999999999999875

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=87.35  E-value=0.76  Score=48.19  Aligned_cols=33  Identities=33%  Similarity=0.568  Sum_probs=29.9

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      +.+++++|+|+||+|..+++.|+..|. +++++|
T Consensus       330 ~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~  362 (477)
T PRK09310        330 LNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFN  362 (477)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEe
Confidence            567899999999999999999999998 788876

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=87.34  E-value=0.81  Score=45.24  Aligned_cols=31  Identities=19%  Similarity=0.443  Sum_probs=27.0

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +|.|+|+|++|+.++..|+..|. ++++++.+
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~-~V~l~~r~   32 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRN   32 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCC-eEEEEecC
Confidence            69999999999999999999984 47787754

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=87.33  E-value=1.6  Score=45.29  Aligned_cols=38  Identities=26%  Similarity=0.413  Sum_probs=32.9

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccC
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE   48 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve   48 (410)
                      +.+++|+|+|.|..|..+++.|.+.| ..+++.|...-.
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~~~   42 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRPAP   42 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHHHHCC-CeEEEEcCCCCc
Confidence            44899999999999999999999999 559998865544

>PRK08264 short chain dehydrogenase; Validated

Probab=87.32  E-value=0.87  Score=42.16  Aligned_cols=36  Identities=33%  Similarity=0.501  Sum_probs=31.3

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +.+++|+|.| .|++|.++++.|+..|..++.+++.+
T Consensus         4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~   40 (238)
T PRK08264          4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARD   40 (238)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence            5678999998 69999999999999998778888754

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=87.25  E-value=0.79  Score=44.58  Aligned_cols=31  Identities=26%  Similarity=0.432  Sum_probs=27.0

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .+|+|+|+|++|+.++..|+..|. .+++++.
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r   31 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR   31 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence            379999999999999999999985 4888763

>PRK06436 glycerate dehydrogenase; Provisional

Probab=87.25  E-value=0.75  Score=45.29  Aligned_cols=35  Identities=20%  Similarity=0.271  Sum_probs=30.2

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .|.+++|.|+|.|.+|.++++.|...|+ ++..+|.
T Consensus       119 ~L~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r  153 (303)
T PRK06436        119 LLYNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTR  153 (303)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence            5889999999999999999998877787 4777774

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=87.25  E-value=2.8  Score=39.46  Aligned_cols=31  Identities=26%  Similarity=0.400  Sum_probs=25.9

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~-~V~~~~r   32 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGA-RVVISSR   32 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeC
Confidence            3789998 58999999999999997 4777763

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.25  E-value=0.67  Score=48.49  Aligned_cols=40  Identities=28%  Similarity=0.364  Sum_probs=34.5

Q ss_pred             HHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            5 RQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         5 e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +....+..++|+|+|+|+.|..+++.|...|. .+++.|.+
T Consensus         8 ~~~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~   47 (473)
T PRK00141          8 SALPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDN   47 (473)
T ss_pred             hhcccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            44455778999999999999999999999998 79998854

>PRK06270 homoserine dehydrogenase; Provisional

Probab=87.23  E-value=5.2  Score=40.01  Aligned_cols=23  Identities=30%  Similarity=0.547  Sum_probs=20.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHh
Q 015243           12 GAKVLMVGAGGIGCELLKTLALS   34 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~   34 (410)
                      ..+|.|+|+|.+|..+++.|...
T Consensus         2 ~i~V~IiG~G~VG~~~~~~L~~~   24 (341)
T PRK06270          2 EMKIALIGFGGVGQGVAELLAEK   24 (341)
T ss_pred             eEEEEEECCCHHHHHHHHHHHHh
Confidence            35899999999999999999765

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=87.21  E-value=2.5  Score=38.92  Aligned_cols=29  Identities=31%  Similarity=0.462  Sum_probs=24.8

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQD   38 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~   38 (410)
                      +..++|+|.| .|++|.++++.|+..|..-
T Consensus         4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v   33 (249)
T PRK12825          4 LMGRVALVTGAARGLGRAIALRLARAGADV   33 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCeE
Confidence            4467899998 6999999999999999853

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=87.18  E-value=0.82  Score=45.71  Aligned_cols=33  Identities=30%  Similarity=0.463  Sum_probs=29.8

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCcc
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTI   47 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~V   47 (410)
                      .|+|||+|-+|+.+|..|++.|. +++|+|...+
T Consensus         2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~   34 (380)
T TIGR01377         2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDL   34 (380)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence            58999999999999999999996 5999998654

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PLN02256 arogenate dehydrogenase

Probab=87.16  E-value=0.8  Score=45.12  Aligned_cols=35  Identities=26%  Similarity=0.310  Sum_probs=29.4

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +-+..+|.|||+|.+|..+++.|...|. +++.+|.
T Consensus        33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~   67 (304)
T PLN02256         33 KSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSR   67 (304)
T ss_pred             cCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEEC
Confidence            4466789999999999999999999885 5777773

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=87.12  E-value=3  Score=39.38  Aligned_cols=34  Identities=29%  Similarity=0.560  Sum_probs=28.1

Q ss_pred             HHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEE
Q 015243            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHII   42 (410)
Q Consensus         8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~li   42 (410)
                      ..|++++++|.| .||||.++++.|+..|.. +.++
T Consensus         4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~   38 (260)
T PRK08416          4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVN-IAFT   38 (260)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEE
Confidence            346788999998 589999999999999985 5554

>PRK07454 short chain dehydrogenase; Provisional

Probab=87.11  E-value=3.6  Score=38.13  Aligned_cols=32  Identities=25%  Similarity=0.509  Sum_probs=26.9

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .++++|.| .|++|..+++.|+..|. ++.++|.
T Consensus         6 ~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r   38 (241)
T PRK07454          6 MPRALITGASSGIGKATALAFAKAGW-DLALVAR   38 (241)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            45788888 59999999999999997 5888764

>PRK06128 oxidoreductase; Provisional

Probab=87.09  E-value=3.1  Score=40.36  Aligned_cols=35  Identities=29%  Similarity=0.424  Sum_probs=28.7

Q ss_pred             HHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus         8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      .+|++++++|.| .|+||.++++.|+..|.. +.+++
T Consensus        51 ~~l~~k~vlITGas~gIG~~~a~~l~~~G~~-V~i~~   86 (300)
T PRK06128         51 GRLQGRKALITGADSGIGRATAIAFAREGAD-IALNY   86 (300)
T ss_pred             cccCCCEEEEecCCCcHHHHHHHHHHHcCCE-EEEEe
Confidence            357788999998 589999999999999974 55543

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=87.09  E-value=3.9  Score=44.59  Aligned_cols=34  Identities=32%  Similarity=0.503  Sum_probs=30.2

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ..++|+|||+|..|...+..|++.|.. ++|+|..
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~-Vtv~e~~  225 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHD-VTIFDAN  225 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCc-EEEEecC
Confidence            357899999999999999999999975 9999854

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=87.08  E-value=5.3  Score=38.50  Aligned_cols=29  Identities=38%  Similarity=0.689  Sum_probs=24.3

Q ss_pred             cEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           14 KVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        14 ~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      +|+|.| .|.+|..+++.|...|.. ++++|
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~~-V~~~~   30 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGHE-VVVLD   30 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCCe-EEEEe
Confidence            588997 699999999999999875 56665

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=87.03  E-value=3  Score=42.14  Aligned_cols=104  Identities=19%  Similarity=0.207  Sum_probs=58.9

Q ss_pred             EEEECCcHHHHHHHHHH--HHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCC
Q 015243           15 VLMVGAGGIGCELLKTL--ALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (410)
Q Consensus        15 VlvvG~GgiG~ev~knL--a~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~   92 (410)
                      |+|||+|..|..+|..|  +..|. ++.|+|...--.-.-++...|-..+++.     ....+....+...|........
T Consensus         2 viIvGaGpAGlslA~~l~~~~~g~-~Vllid~~~~~~~~~~~tW~~~~~~~~~-----~~~~v~~~w~~~~v~~~~~~~~   75 (374)
T PF05834_consen    2 VIIVGAGPAGLSLARRLADARPGL-SVLLIDPKPKPPWPNDRTWCFWEKDLGP-----LDSLVSHRWSGWRVYFPDGSRI   75 (374)
T ss_pred             EEEECCcHHHHHHHHHHHhcCCCC-EEEEEcCCccccccCCcccccccccccc-----hHHHHheecCceEEEeCCCceE
Confidence            78999999999999999  66664 6999997654422233344455555665     3344444444555554333221


Q ss_pred             CCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEe
Q 015243           93 DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVES  134 (410)
Q Consensus        93 ~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~  134 (410)
                      .        ..+..  ..++...-..++.+.|...+.-++.+
T Consensus        76 ~--------~~~~Y--~~i~~~~f~~~l~~~~~~~~~~~~~~  107 (374)
T PF05834_consen   76 L--------IDYPY--CMIDRADFYEFLLERAAAGGVIRLNA  107 (374)
T ss_pred             E--------cccce--EEEEHHHHHHHHHHHhhhCCeEEEcc
Confidence            1        11222  23344555556666666555555443

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=86.94  E-value=2.9  Score=40.30  Aligned_cols=30  Identities=40%  Similarity=0.699  Sum_probs=25.2

Q ss_pred             EEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           15 VLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        15 VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      |+|.| +|.+|+.+++.|...|...+.++|.
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~   31 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGITDILVVDN   31 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCCceEEEEec
Confidence            57777 6999999999999999766777763

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PRK06914 short chain dehydrogenase; Provisional

Probab=86.93  E-value=2.4  Score=40.30  Aligned_cols=34  Identities=18%  Similarity=0.261  Sum_probs=27.0

Q ss_pred             hCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ++++++|.| .|++|..+++.|+..|.. +.+++.+
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~~-V~~~~r~   36 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGYL-VIATMRN   36 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCE-EEEEeCC
Confidence            456788888 689999999999999864 6666543

>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=86.85  E-value=4.2  Score=32.71  Aligned_cols=73  Identities=14%  Similarity=0.150  Sum_probs=49.8

Q ss_pred             hHHHHHHHHHHhhCCCCeEEEE--ccCCCCCc-chHhhhccCcEEEEccCC--hHHHHHHHHHHHHCCCcEEEecccCcc
Q 015243           66 SKAKVARDAVLKFRPQMSITAH--HANVKDPK-FNVEFFKQFNVVLNGLDN--LDARRHVNRLCLAADVPLVESGTTGFL  140 (410)
Q Consensus        66 ~Ka~~a~~~l~~~np~v~i~~~--~~~i~~~~-~~~~~~~~~DvVi~a~Dn--~~~r~~i~~~c~~~~~p~i~~g~~G~~  140 (410)
                      ......++.+++.+  .+...+  ........ .-+..+++.|+||..+|.  ..+...+-+.|.++++|++.+...|..
T Consensus        10 ~~~~~~~~~~~~~G--~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~   87 (97)
T PF10087_consen   10 DRERRYKRILEKYG--GKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVS   87 (97)
T ss_pred             ccHHHHHHHHHHcC--CEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence            34455666777754  455556  22222221 134567888999998875  468889999999999999998766643

>PRK07574 formate dehydrogenase; Provisional

Probab=86.84  E-value=0.8  Score=46.63  Aligned_cols=92  Identities=22%  Similarity=0.265  Sum_probs=57.9

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      .|.+++|.|||.|.||.++++.|...|+. +..+|....                   +.+..    ...    .++.+ 
T Consensus       189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~~-V~~~dr~~~-------------------~~~~~----~~~----g~~~~-  239 (385)
T PRK07574        189 DLEGMTVGIVGAGRIGLAVLRRLKPFDVK-LHYTDRHRL-------------------PEEVE----QEL----GLTYH-  239 (385)
T ss_pred             ecCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEECCCCC-------------------chhhH----hhc----Cceec-
Confidence            58899999999999999999999988874 667663210                   00000    011    11111 


Q ss_pred             cCCCCCcchHhhhccCcEEEEcc-CChHHHHHHHHHHHH---CCCcEEEec
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLA---ADVPLVESG  135 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~-Dn~~~r~~i~~~c~~---~~~p~i~~g  135 (410)
                         .   ..+++++.+|+|+.++ .+.+++..+++....   .+.-+|+.+
T Consensus       240 ---~---~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a  284 (385)
T PRK07574        240 ---V---SFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTA  284 (385)
T ss_pred             ---C---CHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECC
Confidence               0   1347789999998876 456677777654333   344566654

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=86.83  E-value=3.3  Score=38.95  Aligned_cols=32  Identities=19%  Similarity=0.390  Sum_probs=27.0

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEE
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHII   42 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~li   42 (410)
                      +.+++++|.| .|+||.++++.|+..|.. +.++
T Consensus         5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~~-vvi~   37 (261)
T PRK08936          5 LEGKVVVITGGSTGLGRAMAVRFGKEKAK-VVIN   37 (261)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEE
Confidence            6788999997 789999999999999965 5454

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=86.71  E-value=1.8  Score=42.52  Aligned_cols=77  Identities=10%  Similarity=0.237  Sum_probs=54.7

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .+.+++|+||| .|.+|..++.+|...|. .+++.+..+-              +                         
T Consensus       155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~-tVtv~~~rT~--------------~-------------------------  194 (296)
T PRK14188        155 DLSGLNAVVIGRSNLVGKPMAQLLLAANA-TVTIAHSRTR--------------D-------------------------  194 (296)
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHhCCC-EEEEECCCCC--------------C-------------------------
Confidence            36889999999 89999999999998885 4676642110              0                         


Q ss_pred             ccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEeccc
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT  137 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~  137 (410)
                               ..+..+++|+||.|+.+..   .+.....+-+.-+|+.|+.
T Consensus       195 ---------l~e~~~~ADIVIsavg~~~---~v~~~~lk~GavVIDvGin  232 (296)
T PRK14188        195 ---------LPAVCRRADILVAAVGRPE---MVKGDWIKPGATVIDVGIN  232 (296)
T ss_pred             ---------HHHHHhcCCEEEEecCChh---hcchheecCCCEEEEcCCc
Confidence                     1345678999999988755   3444445567778888764

>PRK07904 short chain dehydrogenase; Provisional

Probab=86.65  E-value=4.7  Score=38.05  Aligned_cols=33  Identities=12%  Similarity=0.280  Sum_probs=25.9

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .++|+|.| .||+|.++++.|+..|--++.+++.
T Consensus         8 ~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r   41 (253)
T PRK07904          8 PQTILLLGGTSEIGLAICERYLKNAPARVVLAAL   41 (253)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeC
Confidence            34677777 7899999999999986446777763

>PRK08589 short chain dehydrogenase; Validated

Probab=86.63  E-value=2.2  Score=40.72  Aligned_cols=34  Identities=26%  Similarity=0.381  Sum_probs=28.4

Q ss_pred             HHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEe
Q 015243            9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus         9 ~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      ++.+++++|.|+ ||||.++++.|+..|. ++.++|
T Consensus         3 ~l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~   37 (272)
T PRK08589          3 RLENKVAVITGASTGIGQASAIALAQEGA-YVLAVD   37 (272)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence            467789999985 8999999999999996 466665

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=86.58  E-value=2.5  Score=41.38  Aligned_cols=31  Identities=19%  Similarity=0.621  Sum_probs=28.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      .++|-.+|.|-.|+.+++||..+|.+ +++.|
T Consensus        35 ~~~iGFIGLG~MG~~M~~nLik~G~k-VtV~d   65 (327)
T KOG0409|consen   35 KTRIGFIGLGNMGSAMVSNLIKAGYK-VTVYD   65 (327)
T ss_pred             cceeeEEeeccchHHHHHHHHHcCCE-EEEEe
Confidence            68899999999999999999999987 88877

>PLN00106 malate dehydrogenase

Probab=86.52  E-value=1.1  Score=44.63  Aligned_cols=35  Identities=34%  Similarity=0.659  Sum_probs=30.8

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHhCC-CcEEEEeCCc
Q 015243           12 GAKVLMVGA-GGIGCELLKTLALSGF-QDIHIIDMDT   46 (410)
Q Consensus        12 ~~~VlvvG~-GgiG~ev~knLa~~Gv-~~i~liD~D~   46 (410)
                      ..||.|+|+ |.+|+.++..|+..|. +.+.|+|-+.
T Consensus        18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~   54 (323)
T PLN00106         18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN   54 (323)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence            568999999 9999999999999887 5799999644

>TIGR01746 Thioester-redct thioester reductase domain

Probab=86.52  E-value=12  Score=36.50  Aligned_cols=30  Identities=30%  Similarity=0.397  Sum_probs=24.2

Q ss_pred             cEEEECC-cHHHHHHHHHHHHhCC-CcEEEEe
Q 015243           14 KVLMVGA-GGIGCELLKTLALSGF-QDIHIID   43 (410)
Q Consensus        14 ~VlvvG~-GgiG~ev~knLa~~Gv-~~i~liD   43 (410)
                      +|+|.|+ |.+|..+++.|...|- .++..+.
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~   32 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLV   32 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence            5889985 9999999999999984 3566654

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=86.46  E-value=0.73  Score=45.62  Aligned_cols=33  Identities=27%  Similarity=0.374  Sum_probs=28.0

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      |++++|.|||+|.+|..++++|..+|+. +++.+
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~-Viv~~   33 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLN-VIVGL   33 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCe-EEEEE
Confidence            5689999999999999999999999974 44433

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=86.44  E-value=0.96  Score=45.92  Aligned_cols=33  Identities=30%  Similarity=0.530  Sum_probs=29.7

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      ++|+|||+|-+|+.+|..|++.|. +++|+|.+.
T Consensus         1 ~~v~IVG~Gi~Gls~A~~l~~~g~-~V~vle~~~   33 (416)
T PRK00711          1 MRVVVLGSGVIGVTSAWYLAQAGH-EVTVIDRQP   33 (416)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            379999999999999999999996 599999874

>PRK06057 short chain dehydrogenase; Provisional

Probab=86.42  E-value=0.85  Score=42.88  Aligned_cols=36  Identities=28%  Similarity=0.510  Sum_probs=30.5

Q ss_pred             HHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +|.+++|+|+|+ |+||..+++.|+..|. ++.++|.+
T Consensus         4 ~~~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~   40 (255)
T PRK06057          4 RLAGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDID   40 (255)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence            477899999996 9999999999999996 47777644

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=86.39  E-value=3.1  Score=39.42  Aligned_cols=33  Identities=15%  Similarity=0.338  Sum_probs=28.2

Q ss_pred             HhCCcEEEECC---cHHHHHHHHHHHHhCCCcEEEEe
Q 015243           10 IKGAKVLMVGA---GGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        10 L~~~~VlvvG~---GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      +.++.++|.|+   +|||.++++.|+..|. ++.+++
T Consensus         5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~   40 (257)
T PRK08594          5 LEGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTY   40 (257)
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEec
Confidence            56789999997   5999999999999997 477765

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=86.37  E-value=1.6  Score=41.03  Aligned_cols=36  Identities=28%  Similarity=0.525  Sum_probs=30.3

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      +.+++++|.| .|++|.++++.|+..|.. +.++|.+.
T Consensus         4 l~~~~vlItGas~~iG~~ia~~l~~~G~~-v~~~~r~~   40 (257)
T PRK07067          4 LQGKVALLTGAASGIGEAVAERYLAEGAR-VVIADIKP   40 (257)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEcCCH
Confidence            6678899998 599999999999999974 77777554

>PRK05650 short chain dehydrogenase; Provisional

Probab=86.34  E-value=3.9  Score=38.76  Aligned_cols=31  Identities=26%  Similarity=0.595  Sum_probs=25.4

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ++|+|.| .|+||.++++.|+..|.. +.++|.
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~~-V~~~~r   32 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGWR-LALADV   32 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence            3688887 689999999999999975 666653

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=86.31  E-value=9.6  Score=37.12  Aligned_cols=98  Identities=21%  Similarity=0.379  Sum_probs=59.7

Q ss_pred             cEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc-cCC
Q 015243           14 KVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH-ANV   91 (410)
Q Consensus        14 ~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~-~~i   91 (410)
                      +|+|.| .|-+|.++.+.|.  |-..+.-+|...++..|                .+.+++.+++..|++=|.+-. ..+
T Consensus         2 ~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~~Ditd----------------~~~v~~~i~~~~PDvVIn~AAyt~v   63 (281)
T COG1091           2 KILITGANGQLGTELRRALP--GEFEVIATDRAELDITD----------------PDAVLEVIRETRPDVVINAAAYTAV   63 (281)
T ss_pred             cEEEEcCCChHHHHHHHHhC--CCceEEeccCccccccC----------------hHHHHHHHHhhCCCEEEECcccccc
Confidence            589998 5779999999988  44456555544433322                355788889999988765421 111


Q ss_pred             CCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEeccc
Q 015243           92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT  137 (410)
Q Consensus        92 ~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~  137 (410)
                      ...+...+    ...-|    |..+-..+.+.|.+.+.++|..+|.
T Consensus        64 D~aE~~~e----~A~~v----Na~~~~~lA~aa~~~ga~lVhiSTD  101 (281)
T COG1091          64 DKAESEPE----LAFAV----NATGAENLARAAAEVGARLVHISTD  101 (281)
T ss_pred             ccccCCHH----HHHHh----HHHHHHHHHHHHHHhCCeEEEeecc
Confidence            11110000    00011    2234566778899999999988754

>PRK08862 short chain dehydrogenase; Provisional

Probab=86.30  E-value=3.3  Score=38.57  Aligned_cols=33  Identities=21%  Similarity=0.308  Sum_probs=27.4

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      +.+++++|.| .+|+|.++++.|+..|.. +.+++
T Consensus         3 ~~~k~~lVtGas~GIG~aia~~la~~G~~-V~~~~   36 (227)
T PRK08862          3 IKSSIILITSAGSVLGRTISCHFARLGAT-LILCD   36 (227)
T ss_pred             CCCeEEEEECCccHHHHHHHHHHHHCCCE-EEEEc
Confidence            5678899998 568999999999999975 66655

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=86.25  E-value=5.7  Score=41.43  Aligned_cols=34  Identities=29%  Similarity=0.517  Sum_probs=30.1

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ..++|+|||+|..|...+..|++.|.. ++++|..
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~-V~vie~~  175 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHK-VTVFERA  175 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCc-EEEEecC
Confidence            357899999999999999999999975 9998854

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=86.24  E-value=3.8  Score=47.00  Aligned_cols=33  Identities=24%  Similarity=0.334  Sum_probs=30.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +++|+|||+|..|...|..|++.|. +++|+|..
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~-~VtV~E~~  462 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGV-DVTVYEAL  462 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-cEEEEecC
Confidence            5789999999999999999999997 59999864

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=86.23  E-value=2  Score=40.02  Aligned_cols=36  Identities=25%  Similarity=0.365  Sum_probs=29.9

Q ss_pred             HhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        10 L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      +.+++++|.|+ |++|..+++.|+..|. ++.++|.+.
T Consensus         6 ~~~k~vlItGas~~iG~~la~~l~~~G~-~v~~~~~~~   42 (252)
T PRK08220          6 FSGKTVWVTGAAQGIGYAVALAFVEAGA-KVIGFDQAF   42 (252)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecch
Confidence            67789999985 7899999999999996 477777654

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=86.21  E-value=0.91  Score=40.47  Aligned_cols=38  Identities=24%  Similarity=0.541  Sum_probs=28.7

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCcc
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTI   47 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~V   47 (410)
                      .|..++++|+|.|-+|.-+|+.|..+|. +++++|-|.+
T Consensus        20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi   57 (162)
T PF00670_consen   20 MLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPI   57 (162)
T ss_dssp             --TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHH
T ss_pred             eeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChH
Confidence            4678899999999999999999999995 5899987663

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK05884 short chain dehydrogenase; Provisional

Probab=86.21  E-value=2.5  Score=39.14  Aligned_cols=31  Identities=16%  Similarity=0.418  Sum_probs=25.9

Q ss_pred             cEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           14 KVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        14 ~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +++|.|+ |++|.++++.|+..|. ++.++|.+
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~-~v~~~~r~   33 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGH-KVTLVGAR   33 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            6889985 8999999999999997 57777643

>PRK08267 short chain dehydrogenase; Provisional

Probab=86.20  E-value=2.8  Score=39.36  Aligned_cols=31  Identities=26%  Similarity=0.501  Sum_probs=25.7

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ++++|.| .|++|.++++.|+..|. ++.++|.
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r   33 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDI   33 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence            5689998 68999999999999996 4666653

>PRK07791 short chain dehydrogenase; Provisional

Probab=86.15  E-value=2.5  Score=40.81  Aligned_cols=35  Identities=29%  Similarity=0.535  Sum_probs=28.9

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .+.+++++|.| .||||.++++.|+..|.. +.++|.
T Consensus         3 ~l~~k~~lITGas~GIG~aia~~la~~G~~-vii~~~   38 (286)
T PRK07791          3 LLDGRVVIVTGAGGGIGRAHALAFAAEGAR-VVVNDI   38 (286)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEeeC
Confidence            46778899987 679999999999999974 666663

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=86.12  E-value=0.93  Score=44.21  Aligned_cols=33  Identities=33%  Similarity=0.468  Sum_probs=27.5

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      ..|+|||+|..|+.+|..|++.|+. ++|+|...
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~~-v~i~E~~~   34 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGID-VTIIERRP   34 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTCE-EEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHhcccc-cccchhcc
Confidence            3699999999999999999999987 88888654

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK00811 spermidine synthase; Provisional

Probab=86.12  E-value=2.3  Score=41.32  Aligned_cols=35  Identities=26%  Similarity=0.572  Sum_probs=24.8

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      ...+||++|+|+ |.-....|...++.+++++|.|.
T Consensus        76 ~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~  110 (283)
T PRK00811         76 NPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDE  110 (283)
T ss_pred             CCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCH
Confidence            357899999975 44444444445899999998664

>PRK12831 putative oxidoreductase; Provisional

Probab=86.12  E-value=3.7  Score=42.81  Aligned_cols=34  Identities=32%  Similarity=0.529  Sum_probs=30.0

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ..++|+|||+|..|...+..|++.|.. ++|+|..
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~-V~v~e~~  172 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGYD-VTIFEAL  172 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCe-EEEEecC
Confidence            467899999999999999999999975 8888853

>PRK06841 short chain dehydrogenase; Provisional

Probab=86.11  E-value=1  Score=42.10  Aligned_cols=34  Identities=26%  Similarity=0.549  Sum_probs=29.1

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +.+++|+|.| .|+||.++++.|+..|. ++.+++.
T Consensus        13 ~~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r   47 (255)
T PRK06841         13 LSGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDR   47 (255)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            5688999999 49999999999999997 4777764

>PLN00016 RNA-binding protein; Provisional

Probab=86.10  E-value=3.6  Score=41.43  Aligned_cols=114  Identities=18%  Similarity=0.245  Sum_probs=63.9

Q ss_pred             HHHhCCcEEEE----C-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCC
Q 015243            8 EAIKGAKVLMV----G-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM   82 (410)
Q Consensus         8 ~~L~~~~Vlvv----G-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v   82 (410)
                      .....++|+|+    | .|-+|..+++.|...|. ++++++.+.-....+.      ....     .-. ..+..  +. 
T Consensus        48 ~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~------~~~~-----~~~-~~l~~--~~-  111 (378)
T PLN00016         48 AAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMK------KEPF-----SRF-SELSS--AG-  111 (378)
T ss_pred             cccccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhc------cCch-----hhh-hHhhh--cC-
Confidence            34566889999    7 58899999999999995 5777775432110000      0000     000 01111  12 


Q ss_pred             eEEEEccCCCCCcchHhhh--ccCcEEEEccC-ChHHHHHHHHHHHHCCC-cEEEecccCccc
Q 015243           83 SITAHHANVKDPKFNVEFF--KQFNVVLNGLD-NLDARRHVNRLCLAADV-PLVESGTTGFLG  141 (410)
Q Consensus        83 ~i~~~~~~i~~~~~~~~~~--~~~DvVi~a~D-n~~~r~~i~~~c~~~~~-p~i~~g~~G~~G  141 (410)
                       ++....++.+   ....+  .++|+||.+.. +......+-+.|.+.++ .+|..++.|.+|
T Consensus       112 -v~~v~~D~~d---~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg  170 (378)
T PLN00016        112 -VKTVWGDPAD---VKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSSAGVYK  170 (378)
T ss_pred             -ceEEEecHHH---HHhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEccHhhcC
Confidence             3333333321   11222  46899998643 33444556677887877 588887776655

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=86.09  E-value=0.92  Score=44.80  Aligned_cols=36  Identities=28%  Similarity=0.332  Sum_probs=30.7

Q ss_pred             HHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         8 ~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ..|.+++|.|||.|.||.++++.+...|. ++..+|.
T Consensus       141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~  176 (311)
T PRK08410        141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYST  176 (311)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECC
Confidence            46899999999999999999999987776 4666664

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=86.04  E-value=1  Score=44.55  Aligned_cols=33  Identities=36%  Similarity=0.626  Sum_probs=29.2

Q ss_pred             cEEEECC-cHHHHHHHHHHHHhCC-CcEEEEeCCc
Q 015243           14 KVLMVGA-GGIGCELLKTLALSGF-QDIHIIDMDT   46 (410)
Q Consensus        14 ~VlvvG~-GgiG~ev~knLa~~Gv-~~i~liD~D~   46 (410)
                      ||.|+|+ |.+|+.++-.|+..|+ ..|.|+|-+.
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG   35 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            6899999 9999999999999987 5799999643

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=86.00  E-value=3.9  Score=39.18  Aligned_cols=76  Identities=18%  Similarity=0.243  Sum_probs=44.2

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCC-CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      .+.+|+.+|||+ |..........|. ++++-+|..                   ..+.+.+++...+.... +++....
T Consensus        77 ~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s-------------------~~~l~~A~~~~~~~g~~-~v~~~~~  135 (272)
T PRK11873         77 PGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMT-------------------PEMLAKARANARKAGYT-NVEFRLG  135 (272)
T ss_pred             CCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCC-------------------HHHHHHHHHHHHHcCCC-CEEEEEc
Confidence            467999999998 8766544455565 468888743                   23445555555444321 4445545


Q ss_pred             CCCCCcchHhhhccCcEEEEc
Q 015243           90 NVKDPKFNVEFFKQFNVVLNG  110 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a  110 (410)
                      ++.+..+.   -..||+|+..
T Consensus       136 d~~~l~~~---~~~fD~Vi~~  153 (272)
T PRK11873        136 EIEALPVA---DNSVDVIISN  153 (272)
T ss_pred             chhhCCCC---CCceeEEEEc
Confidence            54322111   1368999864

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=85.96  E-value=4.6  Score=40.18  Aligned_cols=108  Identities=17%  Similarity=0.234  Sum_probs=68.1

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCC--cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQ--DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~--~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      .+|.|+| -|.+|..+++.|....+-  .+.+               +++....|+.=.+....              ..
T Consensus         2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~---------------~AS~rSaG~~~~~f~~~--------------~~   52 (334)
T COG0136           2 LNVAVLGATGAVGQVLLELLEERHFPFEELVL---------------LASARSAGKKYIEFGGK--------------SI   52 (334)
T ss_pred             cEEEEEeccchHHHHHHHHHHhcCCCcceEEE---------------EecccccCCccccccCc--------------cc
Confidence            5899998 588999999999976543  2333               45666666631111100              01


Q ss_pred             CCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEE-ecccCccceEEEEeCCC
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVE-SGTTGFLGQVTVHVKGK  150 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~-~g~~G~~G~v~~~~~~~  150 (410)
                      .+.+...+..-++++|+|+.|.....+ ..+...+.+.|.++|+ ++.+-+.-.+-+++|..
T Consensus        53 ~v~~~~~~~~~~~~~Divf~~ag~~~s-~~~~p~~~~~G~~VIdnsSa~Rm~~DVPLVVPeV  113 (334)
T COG0136          53 GVPEDAADEFVFSDVDIVFFAAGGSVS-KEVEPKAAEAGCVVIDNSSAFRMDPDVPLVVPEV  113 (334)
T ss_pred             cCccccccccccccCCEEEEeCchHHH-HHHHHHHHHcCCEEEeCCcccccCCCCCEecCCc
Confidence            112211233446799999999865444 5556677788999997 45556666777777654

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=85.86  E-value=0.7  Score=42.06  Aligned_cols=87  Identities=25%  Similarity=0.258  Sum_probs=47.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~   92 (410)
                      ++|.|+|+|=+|..+|-.|+..|.. ++-+|.|.-....|++-.+.. .+-|.  .+.+++.++.  .  +.....    
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~-V~g~D~~~~~v~~l~~g~~p~-~E~~l--~~ll~~~~~~--~--~l~~t~----   68 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQ-VIGVDIDEEKVEALNNGELPI-YEPGL--DELLKENVSA--G--RLRATT----   68 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSE-EEEE-S-HHHHHHHHTTSSSS--CTTH--HHHHHHHHHT--T--SEEEES----
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCE-EEEEeCChHHHHHHhhccccc-cccch--hhhhcccccc--c--cchhhh----
Confidence            5899999999999999999999954 888898887666676554321 23332  1233333321  1  222221    


Q ss_pred             CCcchHhhhccCcEEEEccCCh
Q 015243           93 DPKFNVEFFKQFNVVLNGLDNL  114 (410)
Q Consensus        93 ~~~~~~~~~~~~DvVi~a~Dn~  114 (410)
                         ...+-.+++|+++.|+..+
T Consensus        69 ---~~~~ai~~adv~~I~VpTP   87 (185)
T PF03721_consen   69 ---DIEEAIKDADVVFICVPTP   87 (185)
T ss_dssp             ---EHHHHHHH-SEEEE----E
T ss_pred             ---hhhhhhhccceEEEecCCC
Confidence               1123368899999997543

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=85.77  E-value=4.9  Score=37.44  Aligned_cols=31  Identities=39%  Similarity=0.652  Sum_probs=25.7

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      ++.++|.| .|++|.++++.|+..|. ++.++|
T Consensus         2 ~k~vlItG~sg~iG~~la~~L~~~g~-~vi~~~   33 (256)
T PRK12745          2 RPVALVTGGRRGIGLGIARALAAAGF-DLAIND   33 (256)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCC-EEEEEe
Confidence            45688887 69999999999999997 466665

>TIGR02028 ChlP geranylgeranyl reductase

Probab=85.72  E-value=1  Score=45.99  Aligned_cols=31  Identities=32%  Similarity=0.559  Sum_probs=28.4

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +|+|||+|..|+.++..|++.|+. +.|+|..
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~~-V~llE~~   32 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGIQ-TFLLERK   32 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCc-EEEEecC
Confidence            799999999999999999999986 8888854

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=85.70  E-value=3.3  Score=38.89  Aligned_cols=34  Identities=26%  Similarity=0.438  Sum_probs=27.3

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      .|.++.++|.| .|+||.++++.|+..|.. +.++|
T Consensus         7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~-vv~~~   41 (253)
T PRK08993          7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCD-IVGIN   41 (253)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEec
Confidence            36678899998 679999999999999965 55544

>cd00704 MDH Malate dehydrogenase

Probab=85.68  E-value=1.1  Score=44.65  Aligned_cols=33  Identities=36%  Similarity=0.621  Sum_probs=29.0

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCc------EEEEeCC
Q 015243           13 AKVLMVGA-GGIGCELLKTLALSGFQD------IHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG~-GgiG~ev~knLa~~Gv~~------i~liD~D   45 (410)
                      .||+|+|+ |.+|+.++..|+..|+-.      +.|+|-+
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~   40 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIP   40 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecC
Confidence            37999999 999999999999988754      9999864

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=85.67  E-value=1.3  Score=42.60  Aligned_cols=113  Identities=14%  Similarity=0.199  Sum_probs=57.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEE---EEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIH---IIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~---liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      ..||.|||||+||..+++.|..-+...+.   +.|.+.-...++          .+..++-.--+.+....|++-|++-.
T Consensus         2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~----------~~~~~~~~~l~~ll~~~~DlVVE~A~   71 (267)
T PRK13301          2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPAL----------AGRVALLDGLPGLLAWRPDLVVEAAG   71 (267)
T ss_pred             ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHh----------hccCcccCCHHHHhhcCCCEEEECCC
Confidence            46899999999999999998754433232   333222000011          01111111012222344665555432


Q ss_pred             cCCCCCcchHhhhc-cCcEEEEc---cCChHHHHHHHHHHHHCCC-cEEEec
Q 015243           89 ANVKDPKFNVEFFK-QFNVVLNG---LDNLDARRHVNRLCLAADV-PLVESG  135 (410)
Q Consensus        89 ~~i~~~~~~~~~~~-~~DvVi~a---~Dn~~~r~~i~~~c~~~~~-p~i~~g  135 (410)
                      ...- ..+...+++ +.|+++..   +-+...+..+.+.|++.+. -++-+|
T Consensus        72 ~~av-~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSG  122 (267)
T PRK13301         72 QQAI-AEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAG  122 (267)
T ss_pred             HHHH-HHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeCh
Confidence            2221 123344555 67777764   4455666777777777654 333344

>PRK09135 pteridine reductase; Provisional

Probab=85.65  E-value=3.7  Score=37.96  Aligned_cols=32  Identities=28%  Similarity=0.497  Sum_probs=26.5

Q ss_pred             hCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      ..++|+|.| .|++|..+++.|+..|.. +.++|
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~-v~~~~   37 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLHAAGYR-VAIHY   37 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEc
Confidence            457899998 699999999999999974 66655

>PRK12937 short chain dehydrogenase; Provisional

Probab=85.65  E-value=4.1  Score=37.65  Aligned_cols=32  Identities=25%  Similarity=0.583  Sum_probs=26.6

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEE
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHII   42 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~li   42 (410)
                      +.+++++|.| .|+||..+++.|+..|.. +.++
T Consensus         3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~-v~~~   35 (245)
T PRK12937          3 LSNKVAIVTGASRGIGAAIARRLAADGFA-VAVN   35 (245)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEe
Confidence            4678899998 599999999999999985 4444

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=85.58  E-value=1  Score=44.82  Aligned_cols=34  Identities=29%  Similarity=0.452  Sum_probs=30.4

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      .|.+++|.|||+|.||+.+++.|...|+. +...|
T Consensus       139 el~gkTvGIiG~G~IG~~va~~l~afgm~-v~~~d  172 (324)
T COG0111         139 ELAGKTVGIIGLGRIGRAVAKRLKAFGMK-VIGYD  172 (324)
T ss_pred             cccCCEEEEECCCHHHHHHHHHHHhCCCe-EEEEC
Confidence            57899999999999999999999999987 66666

>PRK09291 short chain dehydrogenase; Provisional

Probab=85.55  E-value=4.7  Score=37.63  Aligned_cols=31  Identities=26%  Similarity=0.381  Sum_probs=25.0

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      +++|+|.| .|++|..+++.|+..|.. +.+++
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~-v~~~~   33 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHN-VIAGV   33 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEe
Confidence            46799998 589999999999999965 55544

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=85.54  E-value=5.7  Score=38.35  Aligned_cols=88  Identities=23%  Similarity=0.286  Sum_probs=53.1

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC---CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv---~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      .+|.++|+|.+|..++.-|...|.   .+|.+.|.+.                   .|.    +.+....+.. +     
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~-------------------e~~----~~l~~~~g~~-~-----   52 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSE-------------------EKR----AALAAEYGVV-T-----   52 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCH-------------------HHH----HHHHHHcCCc-c-----
Confidence            579999999999999999999994   4677665221                   111    1333333322 1     


Q ss_pred             CCCCCcchHhhhccCcEEEEccCChHHHHHHHHHH-HHCCCcEEE
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC-LAADVPLVE  133 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c-~~~~~p~i~  133 (410)
                        +  ..+.......|+|+.|+--......+.++- ...++.+|.
T Consensus        53 --~--~~~~~~~~~advv~LavKPq~~~~vl~~l~~~~~~~lvIS   93 (266)
T COG0345          53 --T--TDNQEAVEEADVVFLAVKPQDLEEVLSKLKPLTKDKLVIS   93 (266)
T ss_pred             --c--CcHHHHHhhCCEEEEEeChHhHHHHHHHhhcccCCCEEEE
Confidence              1  123467788999999986433333333332 123444554

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=85.51  E-value=1.1  Score=44.30  Aligned_cols=32  Identities=25%  Similarity=0.375  Sum_probs=27.8

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .+|.|+|+|.+|+.++..|+..|.. ++++|.+
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~-V~~~~r~   36 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVP-VRLWARR   36 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCe-EEEEeCC
Confidence            5899999999999999999999854 7887753

>PRK06932 glycerate dehydrogenase; Provisional

Probab=85.42  E-value=0.94  Score=44.80  Aligned_cols=87  Identities=18%  Similarity=0.218  Sum_probs=56.5

Q ss_pred             HHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         8 ~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      ..|.+++|.|||.|.||.++++.+...|+. +..+|..             ...+..                 .     
T Consensus       143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~-V~~~~~~-------------~~~~~~-----------------~-----  186 (314)
T PRK06932        143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMK-VLYAEHK-------------GASVCR-----------------E-----  186 (314)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHhcCCCE-EEEECCC-------------cccccc-----------------c-----
Confidence            368899999999999999999999888874 5554421             000000                 0     


Q ss_pred             ccCCCCCcchHhhhccCcEEEEccC-ChHHHHHHHHHHHHC---CCcEEEec
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGLD-NLDARRHVNRLCLAA---DVPLVESG  135 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~D-n~~~r~~i~~~c~~~---~~p~i~~g  135 (410)
                        ...   .-+++++++|+|+.++. +.+++..+++.....   +.-+|+.+
T Consensus       187 --~~~---~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~a  233 (314)
T PRK06932        187 --GYT---PFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTG  233 (314)
T ss_pred             --ccC---CHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECC
Confidence              000   13577889999988664 567777777755443   33456654

>PLN02740 Alcohol dehydrogenase-like

Probab=85.42  E-value=6.1  Score=39.76  Aligned_cols=33  Identities=24%  Similarity=0.439  Sum_probs=29.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +.+|+|+|+|++|..++..+...|+.+++.+|.
T Consensus       199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~  231 (381)
T PLN02740        199 GSSVAIFGLGAVGLAVAEGARARGASKIIGVDI  231 (381)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcC
Confidence            568999999999999999888999888888864

>TIGR02415 23BDH acetoin reductases

Probab=85.35  E-value=4.3  Score=37.80  Aligned_cols=31  Identities=35%  Similarity=0.624  Sum_probs=25.7

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ++++|.| .|+||..+++.|+..|. ++.+++.
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r   32 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGF-AVAVADL   32 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            3688888 68999999999999997 4777663

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=85.32  E-value=4.6  Score=37.18  Aligned_cols=32  Identities=31%  Similarity=0.534  Sum_probs=26.3

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEE
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHII   42 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~li   42 (410)
                      +.+++|+|.| .|++|.++++.|+..|.. +.++
T Consensus         3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~-v~~~   35 (248)
T PRK05557          3 LEGKVALVTGASRGIGRAIAERLAAQGAN-VVIN   35 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEE
Confidence            4568899998 689999999999999976 4343

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=85.32  E-value=5.1  Score=32.24  Aligned_cols=77  Identities=21%  Similarity=0.301  Sum_probs=49.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      +.+|+-+||| .|......+.+..-.+++-+|.+.                   .-.+.+++.+.+....-+|+.+..++
T Consensus         2 ~~~vLDlGcG-~G~~~~~l~~~~~~~~v~gvD~s~-------------------~~~~~a~~~~~~~~~~~~i~~~~~d~   61 (112)
T PF12847_consen    2 GGRVLDLGCG-TGRLSIALARLFPGARVVGVDISP-------------------EMLEIARERAAEEGLSDRITFVQGDA   61 (112)
T ss_dssp             TCEEEEETTT-TSHHHHHHHHHHTTSEEEEEESSH-------------------HHHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred             CCEEEEEcCc-CCHHHHHHHhcCCCCEEEEEeCCH-------------------HHHHHHHHHHHhcCCCCCeEEEECcc
Confidence            6789999997 455444444444556699988432                   22445556664545555777777776


Q ss_pred             CCCcchHhhhccCcEEEEcc
Q 015243           92 KDPKFNVEFFKQFNVVLNGL  111 (410)
Q Consensus        92 ~~~~~~~~~~~~~DvVi~a~  111 (410)
                         ....++..+||+|++..
T Consensus        62 ---~~~~~~~~~~D~v~~~~   78 (112)
T PF12847_consen   62 ---EFDPDFLEPFDLVICSG   78 (112)
T ss_dssp             ---HGGTTTSSCEEEEEECS
T ss_pred             ---ccCcccCCCCCEEEECC
Confidence               12335567899999965

...

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=85.26  E-value=4.6  Score=40.09  Aligned_cols=74  Identities=11%  Similarity=0.133  Sum_probs=50.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHHH-hCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           12 GAKVLMVGAGGIGCELLKTLAL-SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~-~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      ..++.|+|+|..|...++.|.. ..+.++.+.|                   ....|++..++.+++..  +++....  
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~-------------------r~~~~~~~~~~~~~~~g--~~v~~~~--  184 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYC-------------------RTPSTREKFALRASDYE--VPVRAAT--  184 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEC-------------------CCHHHHHHHHHHHHhhC--CcEEEeC--
Confidence            4789999999999998888764 2345566654                   34567777777776543  3333321  


Q ss_pred             CCCCcchHhhhccCcEEEEccCC
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLDN  113 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~Dn  113 (410)
                           ...+..+++|+|+.|+.+
T Consensus       185 -----~~~eav~~aDiVitaT~s  202 (325)
T TIGR02371       185 -----DPREAVEGCDILVTTTPS  202 (325)
T ss_pred             -----CHHHHhccCCEEEEecCC
Confidence                 134667899999999864

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK09126 hypothetical protein; Provisional

Probab=85.19  E-value=1.1  Score=45.09  Aligned_cols=36  Identities=28%  Similarity=0.564  Sum_probs=31.3

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCcc
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTI   47 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~V   47 (410)
                      ++..|+|||+|..|+.+|..|++.|+. ++|+|....
T Consensus         2 ~~~dviIvGgG~aGl~~A~~L~~~G~~-v~v~E~~~~   37 (392)
T PRK09126          2 MHSDIVVVGAGPAGLSFARSLAGSGLK-VTLIERQPL   37 (392)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCc-EEEEeCCCc
Confidence            457899999999999999999999986 888886653

>PRK08303 short chain dehydrogenase; Provisional

Probab=85.19  E-value=4.5  Score=39.58  Aligned_cols=35  Identities=23%  Similarity=0.420  Sum_probs=29.4

Q ss_pred             HhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      |.++.++|.|+ +|||.++++.|+..|. ++.+++.+
T Consensus         6 l~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~   41 (305)
T PRK08303          6 LRGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRS   41 (305)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence            67788999985 6999999999999997 57777754

>PLN03139 formate dehydrogenase; Provisional

Probab=85.15  E-value=0.92  Score=46.19  Aligned_cols=92  Identities=21%  Similarity=0.194  Sum_probs=57.9

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      .|.+++|.|||+|.+|..+++.|...|+. +..+|.....                   .+..    .+.    .+..  
T Consensus       196 ~L~gktVGIVG~G~IG~~vA~~L~afG~~-V~~~d~~~~~-------------------~~~~----~~~----g~~~--  245 (386)
T PLN03139        196 DLEGKTVGTVGAGRIGRLLLQRLKPFNCN-LLYHDRLKMD-------------------PELE----KET----GAKF--  245 (386)
T ss_pred             CCCCCEEEEEeecHHHHHHHHHHHHCCCE-EEEECCCCcc-------------------hhhH----hhc----Ccee--
Confidence            58899999999999999999999998875 6666632110                   0000    011    1111  


Q ss_pred             cCCCCCcchHhhhccCcEEEEcc-CChHHHHHHHHHHHH---CCCcEEEec
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLA---ADVPLVESG  135 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~-Dn~~~r~~i~~~c~~---~~~p~i~~g  135 (410)
                        ..   .-++.++++|+|+.++ .+.+++..+++-...   .+.-+|+.+
T Consensus       246 --~~---~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a  291 (386)
T PLN03139        246 --EE---DLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNA  291 (386)
T ss_pred             --cC---CHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECC
Confidence              10   1346788999998865 456677777764433   233455654

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=85.11  E-value=6.9  Score=37.56  Aligned_cols=94  Identities=14%  Similarity=0.292  Sum_probs=54.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~   92 (410)
                      ++|+|+|+.+=|..+++.|...|..-+..+=.+      -..+.+ .                 + .+...  .+.+..+
T Consensus         1 m~ILvlGGT~egr~la~~L~~~g~~v~~s~~t~------~~~~~~-~-----------------~-~g~~~--v~~g~l~   53 (256)
T TIGR00715         1 MTVLLMGGTVDSRAIAKGLIAQGIEILVTVTTS------EGKHLY-P-----------------I-HQALT--VHTGALD   53 (256)
T ss_pred             CeEEEEechHHHHHHHHHHHhCCCeEEEEEccC------Cccccc-c-----------------c-cCCce--EEECCCC
Confidence            479999997789999999999885433322111      011111 0                 0 00111  1122222


Q ss_pred             CCcchHhhhc--cCcEEEEccCChH--HHHHHHHHHHHCCCcEEEe
Q 015243           93 DPKFNVEFFK--QFNVVLNGLDNLD--ARRHVNRLCLAADVPLVES  134 (410)
Q Consensus        93 ~~~~~~~~~~--~~DvVi~a~Dn~~--~r~~i~~~c~~~~~p~i~~  134 (410)
                      ... -.+++.  +.|+||+|+..+.  ....+.+.|...++|++--
T Consensus        54 ~~~-l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~   98 (256)
T TIGR00715        54 PQE-LREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRF   98 (256)
T ss_pred             HHH-HHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence            211 123333  4789999987765  4466788999999999854

This enzyme was found to be a monomer by gel filtration.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=85.07  E-value=1.1  Score=48.80  Aligned_cols=33  Identities=27%  Similarity=0.502  Sum_probs=30.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      ..|+|||+|-+|+.+|..|++.|.. ++|+|.+.
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~~-V~VlE~~~  293 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGWQ-VTLYEADE  293 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCe-EEEEecCC
Confidence            5899999999999999999999975 99999874

>PRK06398 aldose dehydrogenase; Validated

Probab=85.04  E-value=3.6  Score=38.87  Aligned_cols=37  Identities=22%  Similarity=0.434  Sum_probs=30.7

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      .|++++++|.| .||||.++++.|+..|. ++.++|.+.
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~   40 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKE   40 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCc
Confidence            46778999998 57999999999999996 577777553

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=84.99  E-value=1.2  Score=47.38  Aligned_cols=36  Identities=22%  Similarity=0.531  Sum_probs=31.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE   48 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve   48 (410)
                      ...|+|||.|.+|+.+|..|++.|. +++|+|...+.
T Consensus         6 ~~DVvIIGGGi~G~~iA~~La~rG~-~V~LlEk~d~~   41 (546)
T PRK11101          6 ETDVIIIGGGATGAGIARDCALRGL-RCILVERHDIA   41 (546)
T ss_pred             cccEEEECcCHHHHHHHHHHHHcCC-eEEEEECCCCC
Confidence            4679999999999999999999998 69999976554

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=84.96  E-value=4.3  Score=39.81  Aligned_cols=35  Identities=29%  Similarity=0.397  Sum_probs=28.4

Q ss_pred             hCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           11 KGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        11 ~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ++++++|.|+ +|||.++++.|+..|..++.+++.+
T Consensus         2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~   37 (314)
T TIGR01289         2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRD   37 (314)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCC
Confidence            4678889985 7999999999999995567777643

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK08507 prephenate dehydrogenase; Validated

Probab=84.89  E-value=1.3  Score=42.63  Aligned_cols=30  Identities=27%  Similarity=0.324  Sum_probs=26.1

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCC-cEEEEe
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQ-DIHIID   43 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~-~i~liD   43 (410)
                      +|.|||+|.+|..++..|...|.. +++.+|
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d   32 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYD   32 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEc
Confidence            799999999999999999999974 566665

>PRK06185 hypothetical protein; Provisional

Probab=84.78  E-value=1.3  Score=44.80  Aligned_cols=35  Identities=23%  Similarity=0.389  Sum_probs=31.1

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      .+..|+|||+|..|+.++..|++.|+. ++|+|.+.
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~-v~liE~~~   39 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLARAGVD-VTVLEKHA   39 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCc-EEEEecCC
Confidence            457899999999999999999999985 89999763

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=84.74  E-value=1.3  Score=44.47  Aligned_cols=35  Identities=29%  Similarity=0.444  Sum_probs=30.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCcc
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTI   47 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~V   47 (410)
                      ...|+|||+|..|+.+|..|++.|+ +++|+|.+..
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~   39 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQSGL-RVALLAPRAP   39 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCC
Confidence            3579999999999999999999998 5999997654

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=84.71  E-value=1.2  Score=45.06  Aligned_cols=34  Identities=21%  Similarity=0.417  Sum_probs=30.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      ...|+|||+|..|+.+|-.|++.|+. ++|+|...
T Consensus         6 ~~dV~IvGaG~aGl~~A~~La~~G~~-v~liE~~~   39 (392)
T PRK08773          6 RRDAVIVGGGVVGAACALALADAGLS-VALVEGRE   39 (392)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCE-EEEEeCCC
Confidence            46899999999999999999999986 99999764

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=84.69  E-value=2.6  Score=38.61  Aligned_cols=25  Identities=36%  Similarity=0.634  Sum_probs=22.1

Q ss_pred             EEEEC-CcHHHHHHHHHHHHhCCCcE
Q 015243           15 VLMVG-AGGIGCELLKTLALSGFQDI   39 (410)
Q Consensus        15 VlvvG-~GgiG~ev~knLa~~Gv~~i   39 (410)
                      |+|+| .|-+|.++++.|...|..-+
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~~v~   26 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGHEVI   26 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTTEEE
T ss_pred             EEEEccCCHHHHHHHHHHHHcCCccc
Confidence            68887 89999999999999998744

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=84.68  E-value=1.1  Score=44.98  Aligned_cols=34  Identities=18%  Similarity=0.363  Sum_probs=30.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      ...|+|||+|..|+.++..|++.|+. ++|+|.+.
T Consensus         7 ~~dViIVGaG~~Gl~~A~~L~~~G~~-v~liE~~~   40 (388)
T PRK07494          7 HTDIAVIGGGPAGLAAAIALARAGAS-VALVAPEP   40 (388)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCe-EEEEeCCC
Confidence            45799999999999999999999975 99999764

>PRK14031 glutamate dehydrogenase; Provisional

Probab=84.64  E-value=4.3  Score=42.10  Aligned_cols=37  Identities=22%  Similarity=0.308  Sum_probs=33.1

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .|++++|+|.|.|-+|+..++.|...|..-+.+-|.+
T Consensus       225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~  261 (444)
T PRK14031        225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSD  261 (444)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            3789999999999999999999999999877777844

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=84.63  E-value=1.2  Score=44.31  Aligned_cols=32  Identities=28%  Similarity=0.528  Sum_probs=28.5

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCC-C-----cEEEEeC
Q 015243           13 AKVLMVGA-GGIGCELLKTLALSGF-Q-----DIHIIDM   44 (410)
Q Consensus        13 ~~VlvvG~-GgiG~ev~knLa~~Gv-~-----~i~liD~   44 (410)
                      .||.|+|+ |.+|+.++..|+..|+ +     +|.|+|-
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di   41 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL   41 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence            58999999 9999999999999887 4     6999983

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=84.62  E-value=5.5  Score=36.97  Aligned_cols=32  Identities=31%  Similarity=0.547  Sum_probs=27.3

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ++|+|.| .|++|.++++.|+..|. ++.+++.+
T Consensus         2 ~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r~   34 (255)
T TIGR01963         2 KTALVTGAASGIGLAIALALAAAGA-NVVVNDLG   34 (255)
T ss_pred             CEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5789998 68999999999999998 58887754

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=84.59  E-value=2.4  Score=39.85  Aligned_cols=35  Identities=31%  Similarity=0.496  Sum_probs=29.4

Q ss_pred             HhCCcEEEECCc---HHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVGAG---GIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG~G---giG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      |+.++|+|.|++   |+|..+++.|+..|. ++.+++..
T Consensus         3 l~~k~vlItGas~~~giG~~la~~l~~~G~-~vi~~~r~   40 (256)
T PRK12748          3 LMKKIALVTGASRLNGIGAAVCRRLAAKGI-DIFFTYWS   40 (256)
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHcCC-cEEEEcCC
Confidence            567789999984   799999999999997 68887653

>PRK08628 short chain dehydrogenase; Provisional

Probab=84.49  E-value=4.8  Score=37.69  Aligned_cols=33  Identities=33%  Similarity=0.446  Sum_probs=28.0

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      |.+++++|.| .|+||.++++.|+..|.. +.+++
T Consensus         5 l~~~~ilItGasggiG~~la~~l~~~G~~-v~~~~   38 (258)
T PRK08628          5 LKDKVVIVTGGASGIGAAISLRLAEEGAI-PVIFG   38 (258)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHcCCc-EEEEc
Confidence            6788999998 679999999999999975 55554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	410
3kyc_B	660	Human Sumo E1 Complex With A Sumo1-Amp Mimic Length		4e-95
3kyd_B	551	Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mi		8e-95
1y8q_B	640	Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex		2e-94
4ii2_A	1001	Crystal Structure Of Ubiquitin Activating Enzyme 1		1e-44
2nvu_B	805	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		7e-41
3gzn_B	463	Structure Of Nedd8-Activating Enzyme In Complex Wit		1e-40
1tt5_B	434	Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 I		1e-40
1yov_B	444	Insights Into The Ubiquitin Transfer Cascade From T		2e-40
3dbh_B	434	Structural Dissection Of A Gating Mechanism Prevent		2e-39
3dbr_B	434	Structural Dissection Of A Gating Mechanism Prevent		2e-39
1r4m_B	431	Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Com		2e-39
3dbl_B	434	Structural Dissection Of A Gating Mechanism Prevent		2e-39
3cmm_A	1015	Crystal Structure Of The Uba1-Ubiquitin Complex Len		2e-34
3cmm_A	1015	Crystal Structure Of The Uba1-Ubiquitin Complex Len		1e-07
1jwb_B	249	Structure Of The Covalent Acyl-Adenylate Form Of Th		4e-23
2px9_A	217	The Intrinsic Affinity Between E2 And The Cys Domai		7e-18
3h5a_A	358	Crystal Structure Of E. Coli Mccb Length = 358		2e-16
3h5n_A	353	Crystal Structure Of E. Coli Mccb + Atp Length = 35		2e-16
1zud_1	251	Structure Of This-Thif Protein Complex Length = 251		6e-15
1zfn_A	253	Structural Analysis Of Escherichia Coli Thif Length		6e-15
3guc_A	292	Human Ubiquitin-Activating Enzyme 5 In Complex With		4e-08
1y8q_A	346	Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex		5e-08
3vh2_A	616	Crystal Structure Of Saccharomyces Cerevisiae Atg7		2e-07
4gsl_A	615	Crystal Structure Of An Atg7-Atg3 Crosslinked Compl		2e-07
3vh1_A	598	Crystal Structure Of Saccharomyces Cerevisiae Atg7		2e-07
4gsk_A	615	Crystal Structure Of An Atg7-Atg10 Crosslinked Comp		2e-07
3t7e_A	344	Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E		4e-07
3vh3_A	340	Crystal Structure Of Atg7ctd-Atg8 Complex Length =		4e-07
3rui_A	340	Crystal Structure Of Atg7c-Atg8 Complex Length = 34		2e-06
1r4m_A	529	Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Com		9e-06
1tt5_A	531	Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 I		9e-06
3gzn_A	534	Structure Of Nedd8-Activating Enzyme In Complex Wit		1e-05
2nvu_A	536	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		1e-05
1yov_A	537	Insights Into The Ubiquitin Transfer Cascade From T		1e-05

>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic Length = 660

Iteration: 1
 Score =  344 bits (883), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 186/420 (44%), Positives = 270/420 (64%), Gaps = 34/420 (8%)
Query: 5   RQL-EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV 63
           R+L EA+ G +VL+VGAGGIGCELLK L L+GF  I +ID+DTI+VSNLNRQFLF++ HV
Sbjct: 29  RELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHV 88
Query: 64  GQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL 123
           G+SKA+VA+++VL+F P+ +I A+H ++ +P +NVEFF+QF +V+N LDN  AR HVNR+
Sbjct: 89  GRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRM 148
Query: 124 CLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVW 183
           CLAADVPL+ESGT G+LGQVT   KG TECYEC PKP  +T+P CTI +TPS+ +HCIVW
Sbjct: 149 CLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGCTIRNTPSEPIHCIVW 208
Query: 184 AKDLLFAKLFGDKNQENDLNVRXXXXXXXXXXEDVFVRRK----DEDIDQYGRRIYDHVF 239
           AK  LF +LFG+++ + +++             +   R +    D DI +   + +    
Sbjct: 209 AK-YLFNQLFGEEDADQEVSPDRADPEAAWEPTEAEARARACNEDGDIKRISTKEWAKST 267
Query: 240 GY------------NIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDT 287
           GY            +I    + ++ W+ R  P P+  A+V  +   E N +  +N     
Sbjct: 268 GYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQG-EETNASDQQN----- 321
Query: 288 SSVSAMASLGLKNPQDTWTLLESSRIF---LEALKLFFAKREKEIGNLSFDKDDQLAVEF 344
                   LGLK+ Q    +   +R+F   +E L++  A++  +   L +DKDD  A++F
Sbjct: 322 -----EPQLGLKD-QQVLDVKSYARLFSKSIETLRVHLAEK-GDGAELIWDKDDPSAMDF 374
Query: 345 VTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYR 404
           VT+AAN+R   F +++ S F+ K +AGNI+ A+ATTNA+IAGLIV+E +K+L    D+ R
Sbjct: 375 VTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCR 434

>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic Length = 551

Iteration: 1
 Score =  343 bits (881), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 184/416 (44%), Positives = 267/416 (64%), Gaps = 33/416 (7%)
Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           EA+ G +VL+VGAGGIGCELLK L L+GF  I +ID+DTI+VSNLNRQFLF++ HVG+SK
Sbjct: 15  EAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSK 74
Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127
           A+VA+++VL+F P+ +I A+H ++ +P +NVEFF+QF +V+N LDN  AR HVNR+CLAA
Sbjct: 75  AQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAA 134
Query: 128 DVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDL 187
           DVPL+ESGT G+LGQVT   KG TECYEC PKP  +T+P CTI +TPS+ +HCIVWAK  
Sbjct: 135 DVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGCTIRNTPSEPIHCIVWAK-Y 193
Query: 188 LFAKLFGDKNQENDLNVRXXXXXXXXXXEDVFVRRK----DEDIDQYGRRIYDHVFGY-- 241
           LF +LFG+++ + +++             +   R +    D DI +   + +    GY  
Sbjct: 194 LFNQLFGEEDADQEVSPDRADPEAAWEPTEAEARARACNEDGDIKRISTKEWAKSTGYDP 253
Query: 242 ----------NIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVS 291
                     +I    + ++ W+ R  P P+  A+V  +   E N +  +N         
Sbjct: 254 VKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQG-EETNASDQQN--------- 303
Query: 292 AMASLGLKNPQDTWTLLESSRIF---LEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAA 348
               LGLK+ Q    +   +R+F   +E L++  A++  +   L +DKDD  A++FVT+A
Sbjct: 304 -EPQLGLKD-QQVLDVKSYARLFSKSIETLRVHLAEK-GDGAELIWDKDDPSAMDFVTSA 360
Query: 349 ANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYR 404
           AN+R   F +++ S F+ K +AGNI+ A+ATTNA+IAGLIV+E +K+L    D+ R
Sbjct: 361 ANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCR 416

>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex Length = 640

Iteration: 1
 Score =  342 bits (877), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 187/420 (44%), Positives = 270/420 (64%), Gaps = 34/420 (8%)
Query: 5   RQL-EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV 63
           R+L EA+ G +VL+VGAGGIGCELLK L L+GF  I +ID+DTI+VSNLNRQFLF++ HV
Sbjct: 9   RELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHV 68
Query: 64  GQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL 123
           G+SKA+VA+++VL+F P+ +I A+H ++ +P +NVEFF+QF +V+N LDN  AR HVNR+
Sbjct: 69  GRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRM 128
Query: 124 CLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVW 183
           CLAADVPL+ESGT G+LGQVT   KG TECYEC PKP  +T+P  TI +TPS+ +HCIVW
Sbjct: 129 CLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGATIRNTPSEPIHCIVW 188
Query: 184 AKDLLFAKLFGDKNQENDLNVRXXXXXXXXXXEDVFVRRKDEDIDQYGRRI--------- 234
           AK  LF +LFG+++ + +++             +   R +  + D   +RI         
Sbjct: 189 AK-YLFNQLFGEEDADQEVSPDRADPEAAWEPTEAEARARASNEDGDIKRISTKEWAKST 247
Query: 235 -YDHV------FGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDT 287
            YD V      F  +I    + ++ W+ R  P P+  A+V  +   E N +  +N     
Sbjct: 248 GYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQG-EETNASDQQN----- 301
Query: 288 SSVSAMASLGLKNPQDTWTLLESSRIF---LEALKLFFAKREKEIGNLSFDKDDQLAVEF 344
                   LGLK+ Q    +   +R+F   +E L++  A++  +   L +DKDD  A++F
Sbjct: 302 -----EPQLGLKD-QQVLDVKSYARLFSKSIETLRVHLAEK-GDGAELIWDKDDPSAMDF 354
Query: 345 VTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYR 404
           VT+AAN+R   F +++ S F+ K +AGNI+ A+ATTNA+IAGLIV+E +K+L    D+ R
Sbjct: 355 VTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCR 414

>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 1001

Iteration: 1
 Score =  177 bits (449), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 137/468 (29%), Positives = 218/468 (46%), Gaps = 65/468 (13%)
Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQD-----IHIIDMDTIEVSNLNRQFLFRQSH 62
           E I      +VGAG IGCE+LK  A+ G        I + DMD+IE SNLNRQFLFR   
Sbjct: 412 EKIASLSTFLVGAGAIGCEMLKNWAMMGVATGESGHISVTDMDSIEKSNLNRQFLFRPRD 471
Query: 63  VGQSKAKVARDAVLKFRPQMS--ITAHHANV---KDPKFNVEFFKQFNVVLNGLDNLDAR 117
           VG+ K++ A  AV    P ++  IT++   V    +  F  EFF++ ++V N LDN++AR
Sbjct: 472 VGKLKSECASTAVSIMNPSLTGKITSYQERVGPESEGIFGDEFFEKLSLVTNALDNVEAR 531
Query: 118 RHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKF 177
            +V+R C+  + PL+ESGT G  G   V V   TE Y     P  K++P+CT+ + P++ 
Sbjct: 532 MYVDRRCVFFEKPLLESGTLGTKGNTQVVVPHLTESYGSSQDPPEKSFPICTLKNFPNRI 591
Query: 178 VHCIVWAKDL---LFAKLFGDKNQ--------ENDLNVRXXXXXXXXXXEDVFVRRKD-- 224
            H I WA+DL   LF +   + N         E  L              D  V  K   
Sbjct: 592 EHTIAWARDLFEGLFKQPIDNVNMYLSSPNFLETSLKTSSNPREVLENIRDYLVTEKPLS 651
Query: 225 -EDIDQYGRRIYDHVFGYNIE----------VASSNEETWKNRNR-PKP----------- 261
            E+   + R  +D  F  NI+          V S+ +  W    R P P           
Sbjct: 652 FEECIMWARLQFDKFFNNNIQQLLFNFPKDSVTSTGQPFWSGPKRAPTPLSFDIHNREHF 711
Query: 262 ---IYSADVMPENL---TEQNGNVAKNCVVDTSSVSAMASLGLK-----NPQDTWTLLES 310
              + +A +   N    +E +  + +  +   +        G+K     N +   T    
Sbjct: 712 DFIVAAASLYAFNYGLKSETDPAIYERVLAGYNPPPFAPKSGIKIQVNENEEAPETAANK 771
Query: 311 SRIFLEALKLFFAKREKEIG----NLSFDKDDQL--AVEFVTAAANIRAASFGISLHSLF 364
            +  L+++          +G       F+KDD     ++F+TAA+N+RA ++ I+    F
Sbjct: 772 DKQELKSIADSLPPPSSLVGFRLTPAEFEKDDDSNHHIDFITAASNLRAMNYDITPADRF 831
Query: 365 EAKGIAGNIVHAVATTNAIIAGLIVIEAIKVL--LKDTDKYRCGSISL 410
           + K +AG IV A+ T+ A+++GL+ +E +K++   K  ++Y+ G  +L
Sbjct: 832 KTKFVAGKIVPAMCTSTAVVSGLVCLELVKLVDGKKKIEEYKNGFFNL 879

>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 805

Iteration: 1
 Score =  164 bits (415), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 84/192 (43%), Positives = 121/192 (63%), Gaps = 16/192 (8%)
Query: 14  KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARD 73
           KVL++GAGG+GCELLK LALSGF+ IH+IDMDTI+VSNLNRQFLFR   +G+ KA+VA +
Sbjct: 413 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 472
Query: 74  AVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL-------- 125
            +    P  ++  H   ++D  FN  F++QF++++ GLD++ ARR +N + +        
Sbjct: 473 FLNDRVPNCNVVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDG 530
Query: 126 ----AADVPLVESGTTGFLGQVTVHVKGKTECYEC--QPKPAPKTYPVCTITSTPSKFVH 179
               ++ VPL++ GT GF G   V + G T C EC  +  P    +P+CTI S P    H
Sbjct: 531 VLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEH 590
Query: 180 CIVWAKDLLFAK 191
           CI + + L + K
Sbjct: 591 CIEYVRMLQWPK 602

>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 463

Iteration: 1
 Score =  163 bits (413), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 84/193 (43%), Positives = 121/193 (62%), Gaps = 16/193 (8%)
Query: 13  AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVAR 72
            KVL++GAGG+GCELLK LALSGF+ IH+IDMDTI+VSNLNRQFLFR   +G+ KA+VA 
Sbjct: 70  CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAA 129
Query: 73  DAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL------- 125
           + +    P  ++  H   ++D  FN  F++QF++++ GLD++ ARR +N + +       
Sbjct: 130 EFLNDRVPNCNVVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYED 187
Query: 126 -----AADVPLVESGTTGFLGQVTVHVKGKTECYEC--QPKPAPKTYPVCTITSTPSKFV 178
                ++ VPL++ GT GF G   V + G T C EC  +  P    +P+CTI S P    
Sbjct: 188 GVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPE 247
Query: 179 HCIVWAKDLLFAK 191
           HCI + + L + K
Sbjct: 248 HCIEYVRMLQWPK 260

>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 Interaction Required For Optimal Conjugation Of The Ubiquitin-Like Protein Nedd8 Length = 434

Iteration: 1
 Score =  163 bits (413), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 84/193 (43%), Positives = 121/193 (62%), Gaps = 16/193 (8%)
Query: 13  AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVAR 72
            KVL++GAGG+GCELLK LALSGF+ IH+IDMDTI+VSNLNRQFLFR   +G+ KA+VA 
Sbjct: 41  CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAA 100
Query: 73  DAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL------- 125
           + +    P  ++  H   ++D  FN  F++QF++++ GLD++ ARR +N + +       
Sbjct: 101 EFLNDRVPNCNVVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYED 158
Query: 126 -----AADVPLVESGTTGFLGQVTVHVKGKTECYEC--QPKPAPKTYPVCTITSTPSKFV 178
                ++ VPL++ GT GF G   V + G T C EC  +  P    +P+CTI S P    
Sbjct: 159 GVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPE 218
Query: 179 HCIVWAKDLLFAK 191
           HCI + + L + K
Sbjct: 219 HCIEYVRMLQWPK 231

>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The Refined Structure Of The Activating Enzyme For Nedd8 Length = 444

Iteration: 1
 Score =  163 bits (412), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 84/193 (43%), Positives = 121/193 (62%), Gaps = 16/193 (8%)
Query: 13  AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVAR 72
            KVL++GAGG+GCELLK LALSGF+ IH+IDMDTI+VSNLNRQFLFR   +G+ KA+VA 
Sbjct: 51  CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAA 110
Query: 73  DAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL------- 125
           + +    P  ++  H   ++D  FN  F++QF++++ GLD++ ARR +N + +       
Sbjct: 111 EFLNDRVPNCNVVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYED 168
Query: 126 -----AADVPLVESGTTGFLGQVTVHVKGKTECYEC--QPKPAPKTYPVCTITSTPSKFV 178
                ++ VPL++ GT GF G   V + G T C EC  +  P    +P+CTI S P    
Sbjct: 169 GVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPE 228
Query: 179 HCIVWAKDLLFAK 191
           HCI + + L + K
Sbjct: 229 HCIEYVRMLQWPK 241

>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190ala-Nedd8ala72arg) Length = 434

Iteration: 1
 Score =  160 bits (404), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 83/192 (43%), Positives = 120/192 (62%), Gaps = 16/192 (8%)
Query: 14  KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARD 73
           KVL++GAGG+GCELLK LALSGF+ IH+IDMDTI+VSNLNRQFLFR   +G+ KA+VA +
Sbjct: 42  KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 101
Query: 74  AVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL-------- 125
            +    P  ++  H   ++D  FN  F++QF++++ GLD++ ARR +N + +        
Sbjct: 102 FLNDRVPNCNVVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDG 159
Query: 126 ----AADVPLVESGTTGFLGQVTVHVKGKTECYEC--QPKPAPKTYPVCTITSTPSKFVH 179
               ++ VPL++ GT GF G   V + G T C EC  +  P    +P+ TI S P    H
Sbjct: 160 VLDPSSIVPLIDGGTEGFKGNAAVILPGMTACIECTLELYPPQVNFPMATIASMPRLPEH 219
Query: 180 CIVWAKDLLFAK 191
           CI + + L + K
Sbjct: 220 CIEYVRMLQWPK 231

>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190gln-Nedd8ala72arg) Length = 434

Iteration: 1
 Score =  159 bits (403), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 83/192 (43%), Positives = 120/192 (62%), Gaps = 16/192 (8%)
Query: 14  KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARD 73
           KVL++GAGG+GCELLK LALSGF+ IH+IDMDTI+VSNLNRQFLFR   +G+ KA+VA +
Sbjct: 42  KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 101
Query: 74  AVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL-------- 125
            +    P  ++  H   ++D  FN  F++QF++++ GLD++ ARR +N + +        
Sbjct: 102 FLNDRVPNCNVVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDG 159
Query: 126 ----AADVPLVESGTTGFLGQVTVHVKGKTECYEC--QPKPAPKTYPVCTITSTPSKFVH 179
               ++ VPL++ GT GF G   V + G T C EC  +  P    +P+ TI S P    H
Sbjct: 160 VLDPSSIVPLIDGGTEGFKGNAQVILPGMTACIECTLELYPPQVNFPMATIASMPRLPEH 219
Query: 180 CIVWAKDLLFAK 191
           CI + + L + K
Sbjct: 220 CIEYVRMLQWPK 231

>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex Length = 431

Iteration: 1
 Score =  159 bits (403), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 83/192 (43%), Positives = 120/192 (62%), Gaps = 16/192 (8%)
Query: 14  KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARD 73
           KVL++GAGG+GCELLK LALSGF+ IH+IDMDTI+VSNLNRQFLFR   +G+ KA+VA +
Sbjct: 39  KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 98
Query: 74  AVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL-------- 125
            +    P  ++  H   ++D  FN  F++QF++++ GLD++ ARR +N + +        
Sbjct: 99  FLNDRVPNCNVVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDG 156
Query: 126 ----AADVPLVESGTTGFLGQVTVHVKGKTECYEC--QPKPAPKTYPVCTITSTPSKFVH 179
               ++ VPL++ GT GF G   V + G T C EC  +  P    +P+ TI S P    H
Sbjct: 157 VLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMATIASMPRLPEH 216
Query: 180 CIVWAKDLLFAK 191
           CI + + L + K
Sbjct: 217 CIEYVRMLQWPK 228

>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190wt-Nedd8ala72gln) Length = 434

Iteration: 1
 Score =  159 bits (403), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 83/192 (43%), Positives = 120/192 (62%), Gaps = 16/192 (8%)
Query: 14  KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARD 73
           KVL++GAGG+GCELLK LALSGF+ IH+IDMDTI+VSNLNRQFLFR   +G+ KA+VA +
Sbjct: 42  KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 101
Query: 74  AVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL-------- 125
            +    P  ++  H   ++D  FN  F++QF++++ GLD++ ARR +N + +        
Sbjct: 102 FLNDRVPNCNVVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDG 159
Query: 126 ----AADVPLVESGTTGFLGQVTVHVKGKTECYEC--QPKPAPKTYPVCTITSTPSKFVH 179
               ++ VPL++ GT GF G   V + G T C EC  +  P    +P+ TI S P    H
Sbjct: 160 VLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMATIASMPRLPEH 219
Query: 180 CIVWAKDLLFAK 191
           CI + + L + K
Sbjct: 220 CIEYVRMLQWPK 231

>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex Length = 1015

Iteration: 1
 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/196 (43%), Positives = 112/196 (57%), Gaps = 11/196 (5%)
Query: 10  IKGAKVLMVGAGGIGCELLKTLALSGF---QDIHII--DMDTIEVSNLNRQFLFRQSHVG 64
           I  +KV +VG+G IGCE+LK  AL G     D +I+  D D+IE SNLNRQFLFR   VG
Sbjct: 423 IANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQFLFRPKDVG 482
Query: 65  QSKAKVARDAVLKFRPQMS--ITAHHANV---KDPKFNVEFFKQFNVVLNGLDNLDARRH 119
           ++K++VA +AV    P +   I A    V    +  FN  F++  + V N LDN+DAR +
Sbjct: 483 KNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNALDNVDARTY 542
Query: 120 VNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVH 179
           V+R C+    PL+ESGT G  G   V +   TE Y     P  K+ P+CT+ S P+K  H
Sbjct: 543 VDRRCVFYRKPLLESGTLGTKGNTQVIIPRLTESYSSSRDPPEKSIPLCTLRSFPNKIDH 602
Query: 180 CIVWAKDLLFAKLFGD 195
            I WAK  LF   F D
Sbjct: 603 TIAWAKS-LFQGYFTD 617

>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex Length = 1015

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 107/254 (42%), Gaps = 25/254 (9%)
Query: 169 TITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRXXXXXXXXXXEDVFVRRKDE--D 226
           +++S P  F  CI WA+ L F K F    ++   N                 +R     +
Sbjct: 652 SLSSKPHNFEDCIKWAR-LEFEKKFNHDIKQLLFNFPKDAKTSNGEPFWSGAKRAPTPLE 710
Query: 227 IDQYGRRIYDHVFG------YNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVA 280
            D Y    +  V        YN  + S +  +  N +  K +    ++PE     N N+ 
Sbjct: 711 FDIYNNDHFHFVVAGASLRAYNYGIKSDDSNSKPNVDEYKSVIDHMIIPE--FTPNANLK 768
Query: 281 KNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQL 340
                D    +A A+    N  D    L SS      L  F      ++  + F+KDD  
Sbjct: 769 IQVNDDDPDPNANAA----NGSDEIDQLVSSLPDPSTLAGF------KLEPVDFEKDDDT 818
Query: 341 --AVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLK 398
              +EF+TA +N RA ++ I      + K IAG I+ A+ATT +++ GL+ +E  K++  
Sbjct: 819 NHHIEFITACSNCRAQNYFIETADRQKTKFIAGRIIPAIATTTSLVTGLVNLELYKLIDN 878
Query: 399 DTD--KYRCGSISL 410
            TD  +Y+ G ++L
Sbjct: 879 KTDIEQYKNGFVNL 892

>pdb|1JWB|B Chain B, Structure Of The Covalent Acyl-Adenylate Form Of The Moeb-Moad Protein Complex Length = 249

Iteration: 1
 Score =  105 bits (262), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 86/150 (57%), Gaps = 2/150 (1%)
Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           EA+K ++VL+VG GG+GC   + LA +G  ++ ++D DT+ +SNL RQ L   + VGQ K
Sbjct: 27  EALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPK 86
Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127
            + ARDA+ +  P ++IT  +A + D +       + ++VL+  DN+  R  +N  C AA
Sbjct: 87  VESARDALTRINPHIAITPVNALLDDAEL-AALIAEHDLVLDCTDNVAVRNQLNAGCFAA 145
Query: 128 DVPLVESGTTGFLGQVTVHVKGKTE-CYEC 156
            VPLV        GQ+TV      E CY C
Sbjct: 146 KVPLVSGAAIRMEGQITVFTYQDGEPCYRC 175

>pdb|2PX9|A Chain A, The Intrinsic Affinity Between E2 And The Cys Domain Of E1 In Ubiquitin-Like Modifications Length = 217

Iteration: 1
 Score = 88.2 bits (217), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 33/229 (14%)
Query: 163 KTYPVCTITSTPSKFVHCIVWAKDLLFAKLFG--DKNQENDLNVRXXXXXXXXXXEDVFV 220
           +T+P CTI +TPS+ +HCIVWAK  LF +LFG  D +QE   +             +   
Sbjct: 3   RTFPGCTIRNTPSEPIHCIVWAK-YLFNQLFGEEDADQEVSPDRADPEAAWEPTEAEARA 61
Query: 221 RRKDEDID-------QYGR-------RIYDHVFGYNIEVASSNEETWKNRNRPKPIYSAD 266
           R  +ED D       ++ +       +++  +F  +I    + ++ W+ R  P P+  A+
Sbjct: 62  RASNEDGDIKRISTKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAE 121
Query: 267 VMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIF---LEALKLFFA 323
           V  +   E N +  +N             LGLK+ Q    +   +R+F   +E L++  A
Sbjct: 122 VQSQG-EETNASDQQN----------EPQLGLKD-QQVLDVKSYARLFSKSIETLRVHLA 169
Query: 324 KREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGN 372
           ++  +   L +DKDD  A++FVT+AAN+R   F +++ S F+ K +AGN
Sbjct: 170 EK-GDGAELIWDKDDPSAMDFVTSAANLRMHIFSMNMKSRFDIKSMAGN 217

>pdb|3H5A|A Chain A, Crystal Structure Of E. Coli Mccb Length = 358

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 86/152 (56%), Gaps = 3/152 (1%)
Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           + +K AKV+++G GGIG  +   LA SG  +I +ID D IE +NL RQ LF +  VG++K
Sbjct: 111 DKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNK 170
Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDN-LDARRHVNRLCLA 126
            +V +  +LK   ++S++    N+ D   ++    + ++ +   D+  +    VN+ C+ 
Sbjct: 171 TEVIKRELLKRNSEISVSEIALNINDYT-DLHKVPEADIWVVSADHPFNLINWVNKYCVR 229
Query: 127 ADVPLVESGTTGFLGQV-TVHVKGKTECYECQ 157
           A+ P + +G    +     ++V GKT CYECQ
Sbjct: 230 ANQPYINAGYVNDIAVFGPLYVPGKTGCYECQ 261

>pdb|3H5N|A Chain A, Crystal Structure Of E. Coli Mccb + Atp Length = 353

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 86/152 (56%), Gaps = 3/152 (1%)
Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           + +K AKV+++G GGIG  +   LA SG  +I +ID D IE +NL RQ LF +  VG++K
Sbjct: 114 DKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNK 173
Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDN-LDARRHVNRLCLA 126
            +V +  +LK   ++S++    N+ D   ++    + ++ +   D+  +    VN+ C+ 
Sbjct: 174 TEVIKRELLKRNSEISVSEIALNINDYT-DLHKVPEADIWVVSADHPFNLINWVNKYCVR 232
Query: 127 ADVPLVESGTTGFLGQV-TVHVKGKTECYECQ 157
           A+ P + +G    +     ++V GKT CYECQ
Sbjct: 233 ANQPYINAGYVNDIAVFGPLYVPGKTGCYECQ 264

>pdb|1ZUD|1 Chain 1, Structure Of This-Thif Protein Complex Length = 251

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
Query: 13  AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVAR 72
           ++VL++G GG+G      LA +G   + + D D + +SNL RQ LF    + + K++V++
Sbjct: 29  SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQ 88
Query: 73  DAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLV 132
             + +  P + +TA    +       +   + +VVL+  DN+  R+ +N  C+A + PL+
Sbjct: 89  QRLTQLNPDIQLTALQQRLTGEALK-DAVARADVVLDCTDNMATRQEINAACVALNTPLI 147
Query: 133 ESGTTGFLGQVTVHVKGKTE-CYEC 156
            +   GF GQ+ V      + CY C
Sbjct: 148 TASAVGFGGQLMVLTPPWEQGCYRC 172

>pdb|1ZFN|A Chain A, Structural Analysis Of Escherichia Coli Thif Length = 253

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
Query: 13  AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVAR 72
           ++VL++G GG+G      LA +G   + + D D + +SNL RQ LF    + + K++V++
Sbjct: 31  SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQ 90
Query: 73  DAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLV 132
             + +  P + +TA    +       +   + +VVL+  DN+  R+ +N  C+A + PL+
Sbjct: 91  QRLTQLNPDIQLTALQQRLTGEALK-DAVARADVVLDCTDNMATRQEINAACVALNTPLI 149
Query: 133 ESGTTGFLGQVTVHVKGKTE-CYEC 156
            +   GF GQ+ V      + CY C
Sbjct: 150 TASAVGFGGQLMVLTPPWEQGCYRC 174

>pdb|3GUC|A Chain A, Human Ubiquitin-Activating Enzyme 5 In Complex With Amppnp Length = 292

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 22/147 (14%)
Query: 29  KTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88
           + L   G   + + D D +E++N+NR F F+    G SK + A   +    P +    H+
Sbjct: 53  EMLTRCGIGKLLLFDYDKVELANMNRLF-FQPHQAGLSKVQAAEHTLRNINPDVLFEVHN 111
Query: 89  ANVKDPKFNVEFFKQF---------------NVVLNGLDNLDARRHVNRLCLAADVPLVE 133
            N+      VE F+ F               ++VL+ +DN +AR  +N  C       +E
Sbjct: 112 YNIT----TVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELGQTWME 167
Query: 134 SGTT--GFLGQVTVHVKGKTECYECQP 158
           SG +     G + + + G++ C+ C P
Sbjct: 168 SGVSENAVSGHIQLIIPGESACFACAP 194

>pdb|1Y8Q|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex Length = 346

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 10  IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAK 69
           ++ ++VL+VG  G+G E+ K L L+G + + ++D + +   +   QFL R   VG+++A+
Sbjct: 34  LRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAE 93
Query: 70  VARDAVLKFRPQMSITAHHANV-KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAAD 128
            + +      P + +     ++ K P+    FF QF+ V     + D    V+++C    
Sbjct: 94  ASLERAQNLNPMVDVKVDTEDIEKKPE---SFFTQFDAVCLTCCSRDVIVKVDQICHKNS 150
Query: 129 VPLVESGTTGFLG 141
           +        G+ G
Sbjct: 151 IKFFTGDVFGYHG 163

>pdb|3VH2|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-613) Length = 616

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 1   MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
           ++ +  L+ IK  KVL++GAG +GC + + L   G + I  +D  T+  SN  RQ L+  
Sbjct: 316 ILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNF 375
Query: 61  SHVGQSKAKVARDAVLKFRPQMSITA 86
              G+ KA++A  ++ +  P M  T 
Sbjct: 376 EDCGKPKAELAAASLKRIFPLMDATG 401

>pdb|4GSL|A Chain A, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex Length = 615

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 1   MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
           ++ +  L+ IK  KVL++GAG +GC + + L   G + I  +D  T+  SN  RQ L+  
Sbjct: 315 ILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNF 374
Query: 61  SHVGQSKAKVARDAVLKFRPQMSITA 86
              G+ KA++A  ++ +  P M  T 
Sbjct: 375 EDCGKPKAELAAASLKRIFPLMDATG 400

>pdb|3VH1|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-595) Length = 598

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 1   MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
           ++ +  L+ IK  KVL++GAG +GC + + L   G + I  +D  T+  SN  RQ L+  
Sbjct: 316 ILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNF 375
Query: 61  SHVGQSKAKVARDAVLKFRPQMSITA 86
              G+ KA++A  ++ +  P M  T 
Sbjct: 376 EDCGKPKAELAAASLKRIFPLMDATG 401

>pdb|4GSK|A Chain A, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex Length = 615

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 1   MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
           ++ +  L+ IK  KVL++GAG +GC + + L   G + I  +D  T+  SN  RQ L+  
Sbjct: 315 ILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNF 374
Query: 61  SHVGQSKAKVARDAVLKFRPQMSITA 86
              G+ KA++A  ++ +  P M  T 
Sbjct: 375 EDAGKPKAELAAASLKRIFPLMDATG 400

>pdb|3T7E|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2 Architecture And Mechanism In The Autophagy Pathway Length = 344

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 1   MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
           ++ +  L+ IK  KVL++GAG +GC + + L   G + I  +D  T+  SN  RQ L+  
Sbjct: 27  ILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNF 86
Query: 61  SHVGQSKAKVARDAVLKFRPQMSITA 86
              G+ KA++A  ++ +  P M  T 
Sbjct: 87  EDCGKPKAELAAASLKRIFPLMDATG 112

>pdb|3VH3|A Chain A, Crystal Structure Of Atg7ctd-Atg8 Complex Length = 340

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 1   MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
           ++ +  L+ IK  KVL++GAG +GC + + L   G + I  +D  T+  SN  RQ L+  
Sbjct: 23  ILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNF 82
Query: 61  SHVGQSKAKVARDAVLKFRPQMSITA 86
              G+ KA++A  ++ +  P M  T 
Sbjct: 83  EDCGKPKAELAAASLKRIFPLMDATG 108

>pdb|3RUI|A Chain A, Crystal Structure Of Atg7c-Atg8 Complex Length = 340

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 46/86 (53%)
Query: 1   MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ 60
           ++ +  L+ IK  KVL++GAG +GC + + L   G + I  +D  T+  SN  RQ L+  
Sbjct: 23  ILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNF 82
Query: 61  SHVGQSKAKVARDAVLKFRPQMSITA 86
              G+ KA++A  ++ +  P    T 
Sbjct: 83  EDCGKPKAELAAASLKRIFPLXDATG 108

>pdb|1R4M|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex Length = 529

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 69/146 (47%), Gaps = 9/146 (6%)
Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           EA++ A V ++ A   G E+LK L L G     IID + +   +    F  ++S +G+++
Sbjct: 26  EALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNR 85
Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNV-----EFFKQFNVVLNGLDNLDARRHVNR 122
           A    +A ++F  +++     + V++   N+      FF +F VV+           +  
Sbjct: 86  A----EAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLAD 141
Query: 123 LCLAADVPLVESGTTGFLGQVTVHVK 148
           +   + +PL+   T G +G + + +K
Sbjct: 142 VLWNSQIPLLICRTYGLVGYMRIIIK 167

>pdb|1TT5|A Chain A, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 Interaction Required For Optimal Conjugation Of The Ubiquitin-Like Protein Nedd8 Length = 531

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 69/146 (47%), Gaps = 9/146 (6%)
Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           EA++ A V ++ A   G E+LK L L G     IID + +   +    F  ++S +G+++
Sbjct: 28  EALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNR 87
Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNV-----EFFKQFNVVLNGLDNLDARRHVNR 122
           A    +A ++F  +++     + V++   N+      FF +F VV+           +  
Sbjct: 88  A----EAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLAD 143
Query: 123 LCLAADVPLVESGTTGFLGQVTVHVK 148
           +   + +PL+   T G +G + + +K
Sbjct: 144 VLWNSQIPLLICRTYGLVGYMRIIIK 169

>pdb|3GZN|A Chain A, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 534

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 69/146 (47%), Gaps = 9/146 (6%)
Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           EA++ A V ++ A   G E+LK L L G     IID + +   +    F  ++S +G+++
Sbjct: 26  EALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNR 85
Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNV-----EFFKQFNVVLNGLDNLDARRHVNR 122
           A    +A ++F  +++     + V++   N+      FF +F VV+           +  
Sbjct: 86  A----EAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLAD 141
Query: 123 LCLAADVPLVESGTTGFLGQVTVHVK 148
           +   + +PL+   T G +G + + +K
Sbjct: 142 VLWNSQIPLLICRTYGLVGYMRIIIK 167

>pdb|2NVU|A Chain A, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 536

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 69/146 (47%), Gaps = 9/146 (6%)
Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           EA++ A V ++ A   G E+LK L L G     IID + +   +    F  ++S +G+++
Sbjct: 28  EALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNR 87
Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNV-----EFFKQFNVVLNGLDNLDARRHVNR 122
           A    +A ++F  +++     + V++   N+      FF +F VV+           +  
Sbjct: 88  A----EAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLAD 143
Query: 123 LCLAADVPLVESGTTGFLGQVTVHVK 148
           +   + +PL+   T G +G + + +K
Sbjct: 144 VLWNSQIPLLICRTYGLVGYMRIIIK 169

>pdb|1YOV|A Chain A, Insights Into The Ubiquitin Transfer Cascade From The Refined Structure Of The Activating Enzyme For Nedd8 Length = 537

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 69/146 (47%), Gaps = 9/146 (6%)
Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           EA++ A V ++ A   G E+LK L L G     IID + +   +    F  ++S +G+++
Sbjct: 29  EALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNR 88
Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNV-----EFFKQFNVVLNGLDNLDARRHVNR 122
           A    +A ++F  +++     + V++   N+      FF +F VV+           +  
Sbjct: 89  A----EAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLAD 144
Query: 123 LCLAADVPLVESGTTGFLGQVTVHVK 148
           +   + +PL+   T G +G + + +K
Sbjct: 145 VLWNSQIPLLICRTYGLVGYMRIIIK 170

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	410
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	1e-151
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	1e-101
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	5e-19
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	6e-98
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	4e-15
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	6e-98
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	2e-59
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	1e-52
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	8e-40
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	2e-39
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	3e-39
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	5e-38
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	2e-37
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	2e-36
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	5e-33
1z7l_A	276	Ubiquitin-activating enzyme E1 1; SCCH, second cat	6e-32
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A Length = 640

 Score =  442 bits (1137), Expect = e-151
 Identities = 175/415 (42%), Positives = 262/415 (63%), Gaps = 31/415 (7%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           EA+ G +VL+VGAGGIGCELLK L L+GF  I +ID+DTI+VSNLNRQFLF++ HVG+SK
Sbjct: 13  EAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSK 72

Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127
           A+VA+++VL+F P+ +I A+H ++ +P +NVEFF+QF +V+N LDN  AR HVNR+CLAA
Sbjct: 73  AQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAA 132

Query: 128 DVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDL 187
           DVPL+ESGT G+LGQVT   KG TECYEC PKP  +T+P  TI +TPS+ +HCIVWAK  
Sbjct: 133 DVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGATIRNTPSEPIHCIVWAKY- 191

Query: 188 LFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKD----------------EDIDQYG 231
           LF +LFG+++ + +++   +D  ++    +   R +                 +      
Sbjct: 192 LFNQLFGEEDADQEVSPDRADPEAAWEPTEAEARARASNEDGDIKRISTKEWAKSTGYDP 251

Query: 232 RRIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVS 291
            +++  +F  +I    + ++ W+ R  P P+  A+V  +               + S   
Sbjct: 252 VKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQGEE-----------TNASDQQ 300

Query: 292 AMASLGLKNPQDTWTLLESSRIFLEALKLF--FAKREKEIGNLSFDKDDQLAVEFVTAAA 349
               LGLK+ Q    +   +R+F ++++        + +   L +DKDD  A++FVT+AA
Sbjct: 301 NEPQLGLKD-QQVLDVKSYARLFSKSIETLRVHLAEKGDGAELIWDKDDPSAMDFVTSAA 359

Query: 350 NIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYR 404
           N+R   F +++ S F+ K +AGNI+ A+ATTNA+IAGLIV+E +K+L    D+ R
Sbjct: 360 NLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCR 414

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 Length = 805

 Score =  317 bits (813), Expect = e-101
 Identities = 93/258 (36%), Positives = 135/258 (52%), Gaps = 21/258 (8%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
             +   KVL++GAGG+GCELLK LALSGF+ IH+IDMDTI+VSNLNRQFLFR   +G+ K
Sbjct: 407 FLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPK 466

Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL-- 125
           A+VA + +    P  ++  H   ++D  FN  F++QF++++ GLD++ ARR +N + +  
Sbjct: 467 AEVAAEFLNDRVPNCNVVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGMLISL 524

Query: 126 ----------AADVPLVESGTTGFLGQVTVHVKGKTECYECQPK--PAPKTYPVCTITST 173
                     ++ VPL++ GT GF G   V + G T C EC  +  P    +P+CTI S 
Sbjct: 525 LNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASM 584

Query: 174 PSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRR 233
           P    HCI + + L + K                        +    R    +I     R
Sbjct: 585 PRLPEHCIEYVRMLQWPKEQPFGEGVPLDG--DDPEHIQWIFQKSLERASQYNIRGVTYR 642

Query: 234 IYDHVFGYNIE--VASSN 249
           +   V    I   VAS+N
Sbjct: 643 LTQGVVK-RIIPAVASTN 659

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 Length = 805

 Score = 88.4 bits (219), Expect = 5e-19
 Identities = 20/89 (22%), Positives = 38/89 (42%)

Query: 317 ALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHA 376
              L + K +     +  D DD   ++++   +  RA+ + I   +    +G+   I+ A
Sbjct: 595 VRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPA 654

Query: 377 VATTNAIIAGLIVIEAIKVLLKDTDKYRC 405
           VA+TNA+IA +   E  K+          
Sbjct: 655 VASTNAVIAAVCATEVFKIATSAYIPLNN 683

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* Length = 434

 Score =  298 bits (764), Expect = 6e-98
 Identities = 94/257 (36%), Positives = 136/257 (52%), Gaps = 19/257 (7%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
             +   KVL++GAGG+GCELLK LALSGF+ IH+IDMDTI+VSNLNRQFLFR   +G+ K
Sbjct: 36  FLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPK 95

Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL-- 125
           A+VA + +    P  ++  H   ++D  FN  F++QF++++ GLD++ ARR +N + +  
Sbjct: 96  AEVAAEFLNDRVPNCNVVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGMLISL 153

Query: 126 ----------AADVPLVESGTTGFLGQVTVHVKGKTECYECQPK--PAPKTYPVCTITST 173
                     ++ VPL++ GT GF G   V + G T C EC  +  P    +P+CTI S 
Sbjct: 154 LNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASM 213

Query: 174 PSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRR 233
           P    HCI + + L + K       E                +    R    +I     R
Sbjct: 214 PRLPEHCIEYVRMLQWPKEQ--PFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYR 271

Query: 234 IYDHVFGYNI-EVASSN 249
           +   V    I  VAS+N
Sbjct: 272 LTQGVVKRIIPAVASTN 288

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* Length = 434

 Score = 75.7 bits (186), Expect = 4e-15
 Identities = 20/89 (22%), Positives = 38/89 (42%)

Query: 317 ALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHA 376
              L + K +     +  D DD   ++++   +  RA+ + I   +    +G+   I+ A
Sbjct: 224 VRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPA 283

Query: 377 VATTNAIIAGLIVIEAIKVLLKDTDKYRC 405
           VA+TNA+IA +   E  K+          
Sbjct: 284 VASTNAVIAAVCATEVFKIATSAYIPLNN 312

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015

 Score =  313 bits (802), Expect = 6e-98
 Identities = 128/473 (27%), Positives = 204/473 (43%), Gaps = 71/473 (15%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGF-----QDIHIIDMDTIEVSNLNRQFLFRQSH 62
           + I  +KV +VG+G IGCE+LK  AL G        I + D D+IE SNLNRQFLFR   
Sbjct: 421 KKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQFLFRPKD 480

Query: 63  VGQSKAKVARDAVLKFRPQMSITAHH-----ANVKDPKFNVEFFKQFNVVLNGLDNLDAR 117
           VG++K++VA +AV    P +    +          +  FN  F++  + V N LDN+DAR
Sbjct: 481 VGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNALDNVDAR 540

Query: 118 RHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKF 177
            +V+R C+    PL+ESGT G  G   V +   TE Y     P  K+ P+CT+ S P+K 
Sbjct: 541 TYVDRRCVFYRKPLLESGTLGTKGNTQVIIPRLTESYSSSRDPPEKSIPLCTLRSFPNKI 600

Query: 178 VHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVR--------------RK 223
            H I WAK  LF   F D  +  ++ +   +       +   V+                
Sbjct: 601 DHTIAWAKS-LFQGYFTDSAENVNMYLTQPNFVEQTLKQSGDVKGVLESISDSLSSKPHN 659

Query: 224 DEDIDQYGRRIYDHVFGYNIE----------VASSNEETWKNRNR-PKPI-YSAD----- 266
            ED  ++ R  ++  F ++I+            S+ E  W    R P P+ +        
Sbjct: 660 FEDCIKWARLEFEKKFNHDIKQLLFNFPKDAKTSNGEPFWSGAKRAPTPLEFDIYNNDHF 719

Query: 267 ---VMPENLTEQNGNVAKNCVVDTSSVSAMASL----------------------GLKNP 301
              V   +L   N  +  +      +V    S+                           
Sbjct: 720 HFVVAGASLRAYNYGIKSDDSNSKPNVDEYKSVIDHMIIPEFTPNANLKIQVNDDDPDPN 779

Query: 302 QDTWTLLESSRIFLEALK--LFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGIS 359
            +     +     + +L      A  + E  +   D D    +EF+TA +N RA ++ I 
Sbjct: 780 ANAANGSDEIDQLVSSLPDPSTLAGFKLEPVDFEKDDDTNHHIEFITACSNCRAQNYFIE 839

Query: 360 LHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLL--KDTDKYRCGSISL 410
                + K IAG I+ A+ATT +++ GL+ +E  K++    D ++Y+ G ++L
Sbjct: 840 TADRQKTKFIAGRIIPAIATTTSLVTGLVNLELYKLIDNKTDIEQYKNGFVNL 892

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015

 Score =  207 bits (527), Expect = 2e-59
 Identities = 64/400 (16%), Positives = 134/400 (33%), Gaps = 46/400 (11%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
             ++ + VL++G  G+G E+ K + L+G + + + D + +++++L+ QF   +  +GQ +
Sbjct: 23  LKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIGQKR 82

Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFN-VVLNGLDNLDARRHVNRLCLA 126
             V R  + +            NV D   +V    QF  VV     +L+ +  +N  C +
Sbjct: 83  GDVTRAKLAELNA-----YVPVNVLDSLDDVTQLSQFQVVVATDTVSLEDKVKINEFCHS 137

Query: 127 ADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKD 186
           + +  + S T G  G   V +  +    +   +  P+T  V  I   P   V  +   + 
Sbjct: 138 SGIRFISSETRGLFGNTFVDLGDEFTVLDPTGEE-PRTGMVSDI--EPDGTVTMLDDNRH 194

Query: 187 LLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVA 246
            L     G+  + +++         +    +V                Y    G   EV 
Sbjct: 195 GLED---GNFVRFSEVEGLDKLNDGTLFKVEVLGPFAFRIGSVKEYGEYKK-GGIFTEVK 250

Query: 247 SSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWT 306
              + ++      K +      PE +                                + 
Sbjct: 251 VPRKISF------KSLKQQLSNPEFVFSDFAK--------------------------FD 278

Query: 307 LLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFE- 365
                 +  +AL  F  +   E+     D+D    ++ VT  +  +    G  +    + 
Sbjct: 279 RAAQLHLGFQALHQFAVRHNGELPRTMNDEDANELIKLVTDLSVQQPEVLGEGVDVNEDL 338

Query: 366 AKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRC 405
            K ++      +    A   GL+  E +K         + 
Sbjct: 339 IKELSYQARGDIPGVVAFFGGLVAQEVLKACSGKFTPLKQ 378

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* Length = 531

 Score =  183 bits (465), Expect = 1e-52
 Identities = 40/199 (20%), Positives = 78/199 (39%), Gaps = 12/199 (6%)

Query: 5   RQL--------EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQF 56
           RQL        EA++ A V ++ A   G E+LK L L G     IID + +   +    F
Sbjct: 17  RQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNF 76

Query: 57  LFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD-PKFNVEFFKQFNVVLNGLDNLD 115
             ++S +G+++A+ A + + +    +S +    + ++    +  FF +F VV+       
Sbjct: 77  FLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPES 136

Query: 116 ARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPS 175
               +  +   + +PL+   T G +G + + +K           P      +      P 
Sbjct: 137 TSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESH---PDNALEDLRLDKPFPE 193

Query: 176 KFVHCIVWAKDLLFAKLFG 194
              H   +  D +  K   
Sbjct: 194 LREHFQSYDLDHMEKKDHS 212

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* Length = 292

 Score =  142 bits (359), Expect = 2e-39
 Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 14/168 (8%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           E I+   V +VG GG+G    + L   G   + + D D +E++N+NR   F+    G SK
Sbjct: 32  EKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL-FFQPHQAGLSK 90

Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEF-----------FKQFNVVLNGLDNLDA 116
            + A   +    P +    H+ N+   +    F            K  ++VL+ +DN +A
Sbjct: 91  VQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEA 150

Query: 117 RRHVNRLCLAADVPLVESG--TTGFLGQVTVHVKGKTECYECQPKPAP 162
           R  +N  C       +ESG       G + + + G++ C+ C P    
Sbjct: 151 RMTINTACNELGQTWMESGVSENAVSGHIQLIIPGESACFACAPPLVV 198

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* Length = 346

 Score =  142 bits (361), Expect = 3e-39
 Identities = 39/184 (21%), Positives = 80/184 (43%), Gaps = 11/184 (5%)

Query: 5   RQL--------EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQF 56
           RQ+        + ++ ++VL+VG  G+G E+ K L L+G + + ++D + +   +   QF
Sbjct: 21  RQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQF 80

Query: 57  LFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDA 116
           L R   VG+++A+ + +      P + +     +++       FF QF+ V     + D 
Sbjct: 81  LIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEK--KPESFFTQFDAVCLTCCSRDV 138

Query: 117 RRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSK 176
              V+++C    +        G+ G    ++ G+ E  E + K A  +  V     T   
Sbjct: 139 IVKVDQICHKNSIKFFTGDVFGYHGYTFANL-GEHEFVEEKTKVAKVSQGVEDGPDTKRA 197

Query: 177 FVHC 180
            +  
Sbjct: 198 KLDS 201

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* Length = 249

 Score =  136 bits (346), Expect = 5e-38
 Identities = 57/162 (35%), Positives = 88/162 (54%), Gaps = 2/162 (1%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           EA+K ++VL+VG GG+GC   + LA +G  ++ ++D DT+ +SNL RQ L   + VGQ K
Sbjct: 27  EALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPK 86

Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127
            + ARDA+ +  P ++IT  +A + D         + ++VL+  DN+  R  +N  C AA
Sbjct: 87  VESARDALTRINPHIAITPVNALL-DDAELAALIAEHDLVLDCTDNVAVRNQLNAGCFAA 145

Query: 128 DVPLVESGTTGFLGQVTV-HVKGKTECYECQPKPAPKTYPVC 168
            VPLV        GQ+TV   +    CY C  +   +    C
Sbjct: 146 KVPLVSGAAIRMEGQITVFTYQDGEPCYRCLSRLFGENALTC 187

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A Length = 251

 Score =  135 bits (342), Expect = 2e-37
 Identities = 43/162 (26%), Positives = 81/162 (50%), Gaps = 2/162 (1%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           + +  ++VL++G GG+G      LA +G   + + D D + +SNL RQ LF    + + K
Sbjct: 24  QKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPK 83

Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127
           ++V++  + +  P + +TA    +   +   +   + +VVL+  DN+  R+ +N  C+A 
Sbjct: 84  SQVSQQRLTQLNPDIQLTALQQRL-TGEALKDAVARADVVLDCTDNMATRQEINAACVAL 142

Query: 128 DVPLVESGTTGFLGQVTV-HVKGKTECYECQPKPAPKTYPVC 168
           + PL+ +   GF GQ+ V     +  CY C      +    C
Sbjct: 143 NTPLITASAVGFGGQLMVLTPPWEQGCYRCLWPDNQEPERNC 184

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* Length = 340

 Score =  135 bits (341), Expect = 2e-36
 Identities = 38/186 (20%), Positives = 73/186 (39%), Gaps = 24/186 (12%)

Query: 7   LEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQS 66
           L+ IK  KVL++GAG +GC + + L   G + I  +D  T+  SN  RQ L+     G+ 
Sbjct: 29  LDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKP 88

Query: 67  KAKVARDAVLKFRPQMSITAHHANVKDPKFNV--------------EFFKQFNVVLNGLD 112
           KA++A  ++ +  P M  T    ++      +                 K+ +++   +D
Sbjct: 89  KAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD 148

Query: 113 NLDARRHVNRLCLAADVPLVESGTTGFLGQVTV-------HVKGKTECYEC--QPKPAPK 163
           + ++R   + L    +  ++ +   GF   + +           +  CY C     P   
Sbjct: 149 SRESRWLPSLLSNIENKTVI-NAALGFDSYLVMRHGNRDEQSSKQLGCYFCHDVVAPTDS 207

Query: 164 TYPVCT 169
                 
Sbjct: 208 LTDRTL 213

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A Length = 598

 Score =  129 bits (326), Expect = 5e-33
 Identities = 38/185 (20%), Positives = 73/185 (39%), Gaps = 24/185 (12%)

Query: 7   LEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQS 66
           L+ IK  KVL++GAG +GC + + L   G + I  +D  T+  SN  RQ L+     G+ 
Sbjct: 322 LDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKP 381

Query: 67  KAKVARDAVLKFRPQMSITAHHANVKDPKFNV--------------EFFKQFNVVLNGLD 112
           KA++A  ++ +  P M  T    ++      +                 K+ +++   +D
Sbjct: 382 KAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD 441

Query: 113 NLDARRHVNRLCLAADVPLVESGTTGFLGQVTV-------HVKGKTECYEC--QPKPAPK 163
           + ++R   + L    +  ++ +   GF   + +           +  CY C     P   
Sbjct: 442 SRESRWLPSLLSNIENKTVI-NAALGFDSYLVMRHGNRDEQSSKQLGCYFCHDVVAPTDS 500

Query: 164 TYPVC 168
                
Sbjct: 501 LTDRT 505

>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus} Length = 276

 Score =  121 bits (303), Expect = 6e-32
 Identities = 47/276 (17%), Positives = 95/276 (34%), Gaps = 55/276 (19%)

Query: 153 CYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQ------------EN 200
            +        K+ P+CT+ + P+   H + WA+D  F  LF    +            E 
Sbjct: 2   GHHHHHHEFEKSIPICTLKNFPNAIEHTLQWARD-EFEGLFKQPAENVNQYLTDSKFVER 60

Query: 201 DLNVRSSDASSSAHAEDVFVRRKD----EDIDQYGRRIYDHVFGYNIE----------VA 246
            L +  +       A    +  +      D   +    +   +  NI           + 
Sbjct: 61  TLRLAGTQPLEVLEAVQRSLVLQRPQTWGDCVTWACHHWHTQYCNNIRQLLHNFPPDQLT 120

Query: 247 SSNEETWKNRNR-PKPI--------------YSADVMPENL-------TEQNGNVAKNCV 284
           SS    W    R P P+               +A++  +              ++ ++  
Sbjct: 121 SSGAPFWSGPKRCPHPLTFDVNNTLHLDYVMAAANLFAQTYGLTGSQDRAAVASLLQSVQ 180

Query: 285 VDTSSVSAMASLGL--KNPQDTWTLLESSRI--FLEALKLFFAKREKEIGNLSFDKDDQ- 339
           V   +  +   + +  +  Q     ++ SR+      L         ++  + F+KDD  
Sbjct: 181 VPEFTPKSGVKIHVSDQELQSANASVDDSRLEELKATLPSPDKLPGFKMYPIDFEKDDDS 240

Query: 340 -LAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIV 374
              ++F+ AA+N+RA ++ IS     ++K IAG I+
Sbjct: 241 NFHMDFIVAASNLRAENYDISPADRHKSKLIAGKII 276

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 2e-09
 Identities = 63/435 (14%), Positives = 129/435 (29%), Gaps = 127/435 (29%)

Query: 33  LSGFQDIHIIDMDTIEVSNLNRQFLFRQ--SHVGQSKAKVAR-------------DAVLK 77
           LS F+D  + + D  +V ++ +  L ++   H+  SK  V+              + V K
Sbjct: 22  LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81

Query: 78  F-----RPQMS--ITAHHANVKDPKFNVEFF-KQFNVVLNGLDNLDARRHVNRL------ 123
           F     R      ++      + P      + +Q + + N      A+ +V+RL      
Sbjct: 82  FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF-AKYNVSRLQPYLKL 140

Query: 124 ------------------------CLAADVPLVESGTTGFLGQV---TVHVKGKTECYEC 156
                                    +A DV L          ++    +         E 
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL---KNCNSPET 197

Query: 157 QPKPAPKTY-----PVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDL----NVRSS 207
             +   K          + +   S     I   +  L  +L   K  EN L    NV+++
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL-RRLLKSKPYENCLLVLLNVQNA 256

Query: 208 DASSSAHAEDVFVR-----RKDEDIDQYGRRIYDHVFGYNIEVASSNEETWKNRNRPKPI 262
            A    +A ++  +     R  +  D        H+   +  +  + +E        K +
Sbjct: 257 KA---WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV-------KSL 306

Query: 263 YS--ADVMPENLTEQNGNVAKNCVVDTS--SVSAMASLGLKNPQDTW---------TLLE 309
                D  P++L  +        V+ T+   +S +A   +++   TW          L  
Sbjct: 307 LLKYLDCRPQDLPRE--------VLTTNPRRLSIIAES-IRDGLATWDNWKHVNCDKLTT 357

Query: 310 SSRIFLEAL------KLF-----FAKREK------EI--GNLSFDKDDQLAVEFVT-AAA 349
                L  L      K+F     F            +   ++       +  +    +  
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 350 NIRAASFGISLHSLF 364
             +     IS+ S++
Sbjct: 418 EKQPKESTISIPSIY 432

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 5e-05
 Identities = 36/270 (13%), Positives = 80/270 (29%), Gaps = 86/270 (31%)

Query: 23  IGCELLKTLALSGFQDIHIID------MDTIEVSNLNRQF-------LFRQSHVGQSKAK 69
           + C   K L  +  +   + D         I + + +          L  +  +      
Sbjct: 264 LSC---KILLTT--RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCRPQD 317

Query: 70  VARDAVLKFRPQ-MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAAD 128
           + R+  L   P+ +SI A   +++D     + +K  N         D    +    L   
Sbjct: 318 LPREV-LTTNPRRLSIIA--ESIRDGLATWDNWKHVN--------CDKLTTIIESSLNVL 366

Query: 129 VPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTI----TSTPSKFVHCIVWA 184
            P                        E +     K +   ++       P+  +  ++W 
Sbjct: 367 EP-----------------------AEYR-----KMFDRLSVFPPSAHIPTI-LLSLIWF 397

Query: 185 K-----DLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVF 239
                  ++        +    +  +  +++ S  +  + ++ K E+     R I DH  
Sbjct: 398 DVIKSDVMVVVNKLHKYS---LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH-- 452

Query: 240 GYNIEVASSNEETWKNRNRPKP-----IYS 264
            YNI       +T+ + +   P      YS
Sbjct: 453 -YNI------PKTFDSDDLIPPYLDQYFYS 475

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	410
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	100.0
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	100.0
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	100.0
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	100.0
1z7l_A	276	Ubiquitin-activating enzyme E1 1; SCCH, second cat	100.0
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	100.0
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	100.0
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	100.0
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	100.0
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	100.0
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	100.0
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	100.0
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	100.0
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	100.0
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	99.97
1z7l_A	276	Ubiquitin-activating enzyme E1 1; SCCH, second cat	98.75
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.89
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.74
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.58
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.54
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.51
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.46
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	97.27
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.17
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.16
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.15
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.11
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.07
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	97.01
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.93
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	96.92
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.91
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.87
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.84
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	96.71
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	96.69
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	96.66
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.58
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.58
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.55
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.54
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.52
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	96.51
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	96.49
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	96.48
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.43
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	96.41
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.38
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	96.3
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	96.29
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	96.28
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	96.27
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	96.23
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.23
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	96.22
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.21
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.13
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.11
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	96.08
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.08
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.06
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	96.04
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	95.96
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	95.91
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	95.91
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	95.9
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	95.84
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	95.75
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	95.73
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	95.71
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	95.69
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	95.65
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	95.64
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	95.6
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	95.58
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	95.57
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	95.57
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	95.54
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	95.51
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	95.5
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	95.5
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	95.47
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.47
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.47
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	95.42
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	95.42
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	95.4
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	95.39
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	95.38
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	95.38
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	95.36
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	95.34
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	95.31
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	95.31
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	95.29
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	95.28
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	95.28
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	95.25
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	95.24
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	95.21
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	95.2
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	95.19
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	95.18
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	95.14
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	95.12
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	95.12
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	95.11
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	95.1
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	95.1
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	95.08
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	95.07
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	95.06
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	95.05
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	95.04
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	95.02
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	95.02
4ezb_A	317	Uncharacterized conserved protein; structural geno	95.01
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	95.0
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	94.93
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	94.93
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	94.91
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	94.9
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	94.9
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	94.89
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	94.89
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	94.88
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	94.85
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	94.84
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	94.82
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	94.79
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	94.78
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	94.76
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	94.74
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	94.73
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	94.73
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	94.72
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	94.69
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	94.68
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	94.65
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	94.61
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	94.56
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	94.54
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.53
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	94.53
3tl2_A	315	Malate dehydrogenase; center for structural genomi	94.51
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	94.51
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	94.49
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	94.48
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	94.47
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	94.47
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	94.43
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	94.4
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	94.38
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	94.38
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	94.37
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	94.35
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	94.33
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	94.33
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	94.32
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	94.31
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	94.3
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	94.29
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	94.27
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	94.27
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	94.26
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	94.26
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	94.24
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	94.23
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	94.22
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	94.22
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	94.2
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.2
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	94.18
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	94.11
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	94.11
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	94.09
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	94.07
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	94.07
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	94.07
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	94.05
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	94.04
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	94.03
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	94.02
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	94.0
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	93.99
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	93.98
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	93.97
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	93.96
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	93.94
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	93.93
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	93.91
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	93.91
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	93.9
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	93.9
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	93.9
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	93.89
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	93.86
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	93.86
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	93.86
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	93.86
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	93.84
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	93.83
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	93.83
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	93.82
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	93.82
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	93.8
4g65_A	461	TRK system potassium uptake protein TRKA; structur	93.79
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	93.78
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	93.78
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	93.77
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	93.77
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	93.77
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	93.76
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	93.75
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	93.75
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	93.73
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	93.73
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	93.72
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	93.72
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	93.7
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	93.7
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	93.68
3qha_A	296	Putative oxidoreductase; seattle structural genomi	93.68
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	93.67
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	93.64
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	93.63
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	93.63
3rih_A	293	Short chain dehydrogenase or reductase; structural	93.62
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	93.62
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	93.61
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	93.57
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	93.57
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	93.55
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	93.55
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	93.53
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	93.52
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	93.52
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	93.52
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	93.5
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	93.48
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	93.48
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	93.44
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	93.44
1xq6_A	253	Unknown protein; structural genomics, protein stru	93.42
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	93.41
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	93.4
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	93.39
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	93.37
3imf_A	257	Short chain dehydrogenase; structural genomics, in	93.37
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	93.36
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	93.34
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	93.33
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	93.33
1spx_A	278	Short-chain reductase family member (5L265); paral	93.31
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	93.3
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	93.27
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	93.26
4f6c_A	427	AUSA reductase domain protein; thioester reductase	93.23
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	93.22
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	93.2
1lnq_A	336	MTHK channels, potassium channel related protein;	93.19
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	93.19
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	93.17
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	93.17
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	93.15
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	93.15
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	93.14
1xq1_A	266	Putative tropinone reducatse; structural genomics,	93.14
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	93.14
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	93.12
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	93.1
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	93.09
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	93.07
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	93.06
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	93.05
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	93.03
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	93.01
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	92.99
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	92.93
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	92.92
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	92.88
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	92.88
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	92.86
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	92.82
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	92.82
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	92.81
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	92.81
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	92.79
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	92.77
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	92.77
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	92.76
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	92.76
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	92.74
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	92.73
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	92.69
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	92.69
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	92.68
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	92.66
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	92.64
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	92.63
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	92.63
3cxt_A	291	Dehydrogenase with different specificities; rossma	92.61
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	92.58
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	92.54
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	92.54
4dqx_A	277	Probable oxidoreductase protein; structural genomi	92.53
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	92.53
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	92.52
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	92.51
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	92.49
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	92.49
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	92.48
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	92.47
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	92.46
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	92.45
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	92.43
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	92.43
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	92.43
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	92.42
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	92.39
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	92.39
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	92.39
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	92.37
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	92.36
1xkq_A	280	Short-chain reductase family member (5D234); parra	92.34
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	92.32
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	92.3
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	92.28
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	92.26
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	92.24
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	92.2
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	92.15
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	92.14
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	92.13
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	92.12
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	92.12
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	92.11
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	92.1
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	92.09
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	92.08
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	92.07
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	92.07
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	92.03
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	92.01
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	92.0
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	91.98
1xhl_A	297	Short-chain dehydrogenase/reductase family member	91.88
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	91.88
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	91.86
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	91.86
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	91.85
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	91.82
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	91.75
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	91.74
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	91.73
4hb9_A	412	Similarities with probable monooxygenase; flavin,	91.72
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	91.7
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	91.69
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	91.68
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	91.63
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	91.63
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	91.63
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	91.59
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	91.58
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	91.54
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	91.54
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	91.53
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	91.51
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	91.51
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	91.46
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	91.45
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	91.44
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	91.4
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	91.4
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	91.38
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	91.38
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	91.35
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	91.33
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	91.3
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	91.26
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	91.22
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	91.19
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	91.17
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	91.09
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	91.08
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	91.06
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	91.02
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	90.99
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	90.98
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	90.93
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	90.85
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	90.81
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	90.8
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	90.8
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	90.8
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	90.76
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	90.71
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	90.67
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	90.64
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	90.64
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	90.63
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	90.61
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	90.59
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	90.56
2cul_A	232	Glucose-inhibited division protein A-related PROT	90.53
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	90.53
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	90.53
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	90.53
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	90.52
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	90.42
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	90.37
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	90.33
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	90.31
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	90.31
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	90.28
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	90.27
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	90.24
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	90.23
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	90.23
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	90.23
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	90.22
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	90.21
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	90.18
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	90.11
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	90.09
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	90.09
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	90.09
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	90.07
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	90.04
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	90.03
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	90.01
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	90.0
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	89.99
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	89.95
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	89.93
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	89.9
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	89.86
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	89.77
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	89.76
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	89.74
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	89.72
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	89.72
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	89.71
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	89.59
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	89.48
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	89.45
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	89.43
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	89.4
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	89.4
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	89.39
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	89.35
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	89.33
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	89.24
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	89.22
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	89.19
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	89.18
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	89.16
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	89.14
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	89.11
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	89.1
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	89.08
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	89.07
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	89.06
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	89.05
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	88.98
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	88.97
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	88.93
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	88.93
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	88.89
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	88.87
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	88.79
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	88.77
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	88.74
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	88.74
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	88.73
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	88.72
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	88.7
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	88.66
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	88.65
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	88.63
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	88.63
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	88.6
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	88.59
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	88.56
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	88.56
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	88.53
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	88.46
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	88.45
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	88.43
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	88.39
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	88.38
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	88.32
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	88.28
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	88.28
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	88.27
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	88.22
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	88.22
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	88.22
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	88.18
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	88.14

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=100.00  E-value=5.6e-95  Score=761.89  Aligned_cols=396  Identities=44%  Similarity=0.762  Sum_probs=337.7

Q ss_pred             CCCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC
Q 015243            1 MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP   80 (410)
Q Consensus         1 ~~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np   80 (410)
                      .+|+++|++|++++|+||||||+||+++++|+++|||+|+|+|+|+|+.|||+|||||+.+|||++|+++++++++++||
T Consensus         6 l~G~e~Q~kL~~s~VlVVGaGGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP   85 (640)
T 1y8q_B            6 GLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYP   85 (640)
T ss_dssp             CCCHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCT
T ss_pred             hcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCC
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCCC
Q 015243           81 QMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP  160 (410)
Q Consensus        81 ~v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~~  160 (410)
                      +++|+++..++++..+..++++++|+||+|+||.++|.+++++|+.+++|+|++|+.|+.|+++++.|+.++||+|.+.+
T Consensus        86 ~v~V~a~~~~i~~~~~~~~~~~~~DlVvda~Dn~~aR~~ln~~c~~~~iPlI~~g~~G~~G~v~vi~p~~t~Cy~C~~~p  165 (640)
T 1y8q_B           86 KANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKP  165 (640)
T ss_dssp             TCEEEEEESCTTSTTSCHHHHTTCSEEEECCSCHHHHHHHHHHHHHHTCCEEEEEEETTEEEEEEECTTTSCCTTSSCCC
T ss_pred             CCeEEEEecccchhhhhHhhhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecccceEEEECCCCCCCcccCCCC
Confidence            99999999999877677789999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCCceeeccCCCcchHHHHHHHHHHHHHHhCCCCccccccc----cCc-ccc-----------chhhHHhhhhcCCc
Q 015243          161 APKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNV----RSS-DAS-----------SSAHAEDVFVRRKD  224 (410)
Q Consensus       161 ~~~~~p~cti~~~p~~~~h~i~~a~~~~f~~~f~~~~~~~~~~~----~~~-~~~-----------~~~~~~~~~~~~~~  224 (410)
                      ++.++|+||++++|+.++|||+||++ +|+.+|++.+..+++..    ... ...           .++.+..+ ..+.|
T Consensus       166 ~~~~~p~Cti~~~p~~~~hci~~a~~-~f~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  243 (640)
T 1y8q_B          166 TQRTFPGATIRNTPSEPIHCIVWAKY-LFNQLFGEEDADQEVSPDRADPEAAWEPTEAEARARASNEDGDIKRI-STKEW  243 (640)
T ss_dssp             CCCCCCTTTTTSCCCSHHHHHHHHHH-HHHHHHSCCCGGGCCSCCTTCTTSCCC----------------------CHHH
T ss_pred             CCcccceeeecCCCCchHHHHHHHHH-HHHHHhCCcchhhhhcccccchhhhhhhhhhhhhhhhhhhhhHHHHH-hhhhH
Confidence            88999999999999999999999998 79999997653333211    110 000           01111111 12356


Q ss_pred             ccHHHHHH-HHHHhhhcccHHHHhcCCcccCCCCCCCccccCCCCCcchhhhcccccccccccchhhhHHhhhCCCCCCC
Q 015243          225 EDIDQYGR-RIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQD  303 (410)
Q Consensus       225 ~~~~~~a~-~~f~~~F~~~I~~ll~~~~fw~~k~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (410)
                      ++|+.||+ .+|+++|+++|+|||++++||++||+|+||.|+...+.+....  .         ........+|+++ +.
T Consensus       244 ~~~~~~a~~~~f~k~F~~~I~~Ll~~~~fW~~kr~P~pl~fd~~~~~~~~~~--~---------~~~~~~~~~~~~d-~~  311 (640)
T 1y8q_B          244 AKSTGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQGEETN--A---------SDQQNEPQLGLKD-QQ  311 (640)
T ss_dssp             HHHTTSCHHHHHHHHHTHHHHHHTTCGGGCSSSCCCCCCCHHHHHHC-------------------------CCCGG-GS
T ss_pred             HHhHhHHHHHHHHHHHhhHHHHHHhCcccccCCCCCCCcccCcccccccccc--c---------cccccccccCCCh-hh
Confidence            77888887 4999999999999999999999999999999984322211100  0         0001112345544 66


Q ss_pred             cccchhchHHHHHHHHHHHHhhh--hccCCccccCCcHHHHHHHHHHHHHHHHhcCCCCCChhHHHhhhccccchhhhHH
Q 015243          304 TWTLLESSRIFLEALKLFFAKRE--KEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTN  381 (410)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~FeKDDd~hidFI~AasNLRA~ny~I~~~~~~~~k~iag~IiPAiatT~  381 (410)
                      +|+++++.+.|.++++++.++..  ..+.|++||||||+|||||+|||||||+||+||++|+|++|+|||||||||||||
T Consensus       312 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~FdKDDd~h~dFV~aaaNlRA~~y~I~~~~~~~~K~iAG~IIPAIATTn  391 (640)
T 1y8q_B          312 VLDVKSYARLFSKSIETLRVHLAEKGDGAELIWDKDDPSAMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTN  391 (640)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHTCTTCCCCCCTTCHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHTCCCCCHHHH
T ss_pred             hcChhhhhhhHHHHHHHHHHHhhhcccCCCcccCCCCHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCcccchhhHH
Confidence            89999988889988888876643  2488999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCccccccccccC
Q 015243          382 AIIAGLIVIEAIKVLLKDTDKYRCGSISL  410 (410)
Q Consensus       382 aivagl~~~e~~k~~~~~~~~~r~~~~~l  410 (410)
                      ||||||+|+|+||++++++++|||+|+||
T Consensus       392 AiVaGl~~lE~~Kvl~~~~~~~kn~f~n~  420 (640)
T 1y8q_B          392 AVIAGLIVLEGLKILSGKIDQCRTIFLNK  420 (640)
T ss_dssp             HHHHHHHHHHHHHHHTTCGGGCEEEEECS
T ss_pred             HHHHHHHHHHHHHHHhccHHhhhhhheee
Confidence            99999999999999999999999999986

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6e-91  Score=766.68  Aligned_cols=408  Identities=31%  Similarity=0.481  Sum_probs=329.7

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCC-----CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHH
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGF-----QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVL   76 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv-----~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~   76 (410)
                      +|.++|++|++++|+||||||+||+++++|+++||     |+|+|+|+|+|+.|||+|||||+.+|||++|+++|+++++
T Consensus       415 ~G~~~q~kL~~~~VlvVGaGGlGsevlk~La~~Gv~~g~~G~i~lvD~D~Ve~SNLnRQ~lf~~~dvG~~Ka~~aa~~l~  494 (1015)
T 3cmm_A          415 FGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQFLFRPKDVGKNKSEVAAEAVC  494 (1015)
T ss_dssp             HCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTTTCSTTCEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHH
T ss_pred             cCHHHHHHHhcCeEEEEecCHHHHHHHHHHHHcCcCcCCCCeEEEEeCCEeccccccccccCChhhCCCHHHHHHHHHHH
Confidence            58999999999999999999999999999999999     9999999999999999999999999999999999999999


Q ss_pred             hhCCCC--eEEEEccCCCCC---cchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCC
Q 015243           77 KFRPQM--SITAHHANVKDP---KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKT  151 (410)
Q Consensus        77 ~~np~v--~i~~~~~~i~~~---~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t  151 (410)
                      ++||++  +|+++..+++..   .++.+|++++|+||+|+||.++|.+++++|+.+++|+|++|+.|+.|+++++.|+.+
T Consensus       495 ~iNP~v~~~v~~~~~~i~~~~~~~~~~~~~~~~D~Vi~a~Dn~~aR~~ln~~c~~~~~Pli~~g~~G~~G~v~v~~p~~t  574 (1015)
T 3cmm_A          495 AMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNALDNVDARTYVDRRCVFYRKPLLESGTLGTKGNTQVIIPRLT  574 (1015)
T ss_dssp             HHCGGGTTTEEEECCCCSGGGTTTSCHHHHHHCSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEEETTEEEEEEECTTTB
T ss_pred             HHCCCCcceEEEEecccCchhhhhccHhhhccCCEEEECCCCHHHHHHHHHHHHHcCCcEEEeCCCccccceEEEeCCCC
Confidence            999999  999999998643   355789999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCCCCceeeccCCCcchHHHHHHHHHHHHHHhCCCCccc-c-ccccC---------c-cccchhhHHhhh
Q 015243          152 ECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQEN-D-LNVRS---------S-DASSSAHAEDVF  219 (410)
Q Consensus       152 ~c~~C~~~~~~~~~p~cti~~~p~~~~h~i~~a~~~~f~~~f~~~~~~~-~-~~~~~---------~-~~~~~~~~~~~~  219 (410)
                      +||.|..+|++.++|+||++++|+.++|||+||++ +|+.+|+..++.. . +..+.         . ....++.+.+.+
T Consensus       575 ~cy~c~~dp~~~~~P~Ctl~~~P~~~~h~i~wa~~-~f~~lf~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l  653 (1015)
T 3cmm_A          575 ESYSSSRDPPEKSIPLCTLRSFPNKIDHTIAWAKS-LFQGYFTDSAENVNMYLTQPNFVEQTLKQSGDVKGVLESISDSL  653 (1015)
T ss_dssp             CCGGGSCCCCCCCCCHHHHHTCCCSHHHHHHHHHH-HHHHHHTHHHHHHHHHHHCTTHHHHHHC---CCHHHHHHHHHHH
T ss_pred             CccCCCCCCCCCCCCcccccCCCCCcHHHHHHHHH-HHHHHHhhhhhhhhhhccCchhHHHHHhccchhHHHHHHHHHHh
Confidence            99999988888999999999999999999999999 7999998654321 1 11110         0 001223334443


Q ss_pred             --hcCCcccHHHHHHHHHHhhhcccHHHHhcC----------CcccCC-CCCCCccccCCCCCc--chhhhcccccccc-
Q 015243          220 --VRRKDEDIDQYGRRIYDHVFGYNIEVASSN----------EETWKN-RNRPKPIYSADVMPE--NLTEQNGNVAKNC-  283 (410)
Q Consensus       220 --~~~~~~~~~~~a~~~f~~~F~~~I~~ll~~----------~~fw~~-k~~P~pl~~~~~~~~--~~~~~~~~~~~~~-  283 (410)
                        .++.+++|++||+.+|+++|+++|+|||++          ++||++ ||+|+||.|+...+.  .++...+++.+.. 
T Consensus       654 ~~~~~~~~~c~~~a~~~f~~~F~~~I~~Ll~~~p~d~~~~~g~~fW~~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~  733 (1015)
T 3cmm_A          654 SSKPHNFEDCIKWARLEFEKKFNHDIKQLLFNFPKDAKTSNGEPFWSGAKRAPTPLEFDIYNNDHFHFVVAGASLRAYNY  733 (1015)
T ss_dssp             HSCCSSHHHHHHHHHHHHHHHHTHHHHHHHHHSCTTCBCSTTCBSSCTTCCCCCCCCCCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCcccccCCCCCCCCcccCCCCHHHHHHHHHHHHhHHHhc
Confidence              356899999999999999999999999976          899997 999999999955433  4454444443221 


Q ss_pred             --cc-----cchhhhHHhhhC---CCC--CC---Ccccc-hh----chHH-HHHHHHHHHHhhh-------hccCCcccc
Q 015243          284 --VV-----DTSSVSAMASLG---LKN--PQ---DTWTL-LE----SSRI-FLEALKLFFAKRE-------KEIGNLSFD  335 (410)
Q Consensus       284 --~~-----~~~~~~~~~~~~---~~~--~~---~~~~~-~~----~~~~-~~~~~~~~~~~~~-------~~~~p~~Fe  335 (410)
                        ..     ..+.....+.+.   +.+  +.   ++... ++    ..+. +.++++++..+..       ..+.|++||
T Consensus       734 ~i~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~ki~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Fe  813 (1015)
T 3cmm_A          734 GIKSDDSNSKPNVDEYKSVIDHMIIPEFTPNANLKIQVNDDDPDPNANAANGSDEIDQLVSSLPDPSTLAGFKLEPVDFE  813 (1015)
T ss_dssp             TCCCSSTTSSCCHHHHHHHHTTCCCCCCCCCSSCCCCSSTTSSCC---------CCHHHHTTSCCGGGGTTCCCCCCCCC
T ss_pred             CCCCccccccCCHHHHHHHHhhCcCCCcCCccCceeccchhhhcccccccccHHHHHHHHHHhccchhcccCCCCceeee
Confidence              11     011111111110   000  00   01100 00    0011 3344455544321       247899999


Q ss_pred             CCcHH--HHHHHHHHHHHHHHhcCCCCCChhHHHhhhccccchhhhHHHHHHHHHHHHHHHHHhc--CccccccccccC
Q 015243          336 KDDQL--AVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLK--DTDKYRCGSISL  410 (410)
Q Consensus       336 KDDd~--hidFI~AasNLRA~ny~I~~~~~~~~k~iag~IiPAiatT~aivagl~~~e~~k~~~~--~~~~~r~~~~~l  410 (410)
                      ||||+  |||||+|||||||+||+||++|++++|+|||||||||||||||||||+|+|+||+++|  ++++|||+|+||
T Consensus       814 KDDd~n~h~dFi~aasNlRa~ny~I~~~~~~~~k~iaG~IIPAIaTT~AivaGl~~lE~~K~~~~~~~~~~~kn~f~nl  892 (1015)
T 3cmm_A          814 KDDDTNHHIEFITACSNCRAQNYFIETADRQKTKFIAGRIIPAIATTTSLVTGLVNLELYKLIDNKTDIEQYKNGFVNL  892 (1015)
T ss_dssp             TTCTTSSHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCEEEEET
T ss_pred             cCCCchhHHHHHHHHHHHHHHHcCCCccCHHHHHHHhCCcCccchhHHHHHHHHHHHHHHHHHhcccchhhhhhHHHhc
Confidence            99998  9999999999999999999999999999999999999999999999999999999998  689999999997

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=100.00  E-value=2.3e-56  Score=454.06  Aligned_cols=263  Identities=40%  Similarity=0.677  Sum_probs=239.2

Q ss_pred             CHHHHH-HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            3 SERQLE-AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         3 g~e~q~-~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      |.+.++ .|++++|+|||+||+||+++++|+++|||+|+|+|+|+|+.|||+|||||+.+|+|++|+++++++++++||+
T Consensus        30 g~e~~~~~L~~~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~lnp~  109 (434)
T 1tt5_B           30 STESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPN  109 (434)
T ss_dssp             CSSHHHHHHHTCCEEEECSSTHHHHHHHHHHHTTCCCEEEEECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHhcCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEcCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhCCC
Confidence            455555 5699999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHC------------CCcEEEecccCccceEEEEeCC
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA------------DVPLVESGTTGFLGQVTVHVKG  149 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~------------~~p~i~~g~~G~~G~v~~~~~~  149 (410)
                      ++|+++..++++.  +.++++++|+||+|+||.++|.++|+.|+.+            ++|+|++++.|+.|++.++.|+
T Consensus       110 v~v~~~~~~i~~~--~~~~~~~~DlVi~~~Dn~~~R~~in~~c~~~~~~~~g~~~~~~~iPli~~~~~g~~G~v~v~~p~  187 (434)
T 1tt5_B          110 CNVVPHFNKIQDF--NDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPG  187 (434)
T ss_dssp             CCCEEEESCGGGB--CHHHHTTCSEEEECCSCHHHHHHHHHHHHHTCCBSSSCBCGGGCCCEEEEEEETTEEEEEEECTT
T ss_pred             CEEEEEecccchh--hHHHhcCCCEEEECCCCHHHHHHHHHHHHHhhhccccccccccCCcEEEeccccceeEEEEECCC
Confidence            9999999988653  3689999999999999999999999999984            9999999999999999999999


Q ss_pred             CCccccccCC--CCCCCCCceeeccCCCcchHHHHHHHHHHHHHHhCCCCccccccccCccccchhhHHhhhhcCCcccH
Q 015243          150 KTECYECQPK--PAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDI  227 (410)
Q Consensus       150 ~t~c~~C~~~--~~~~~~p~cti~~~p~~~~h~i~~a~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (410)
                      .++||.|..+  |++..+|.|+++++|+.++|||.||+.++|+..+                                  
T Consensus       188 ~t~Cy~C~~~~~p~~~~~p~Ct~~~~p~~~~h~i~~a~~i~~~~~~----------------------------------  233 (434)
T 1tt5_B          188 MTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQ----------------------------------  233 (434)
T ss_dssp             TSCCGGGGGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHTHHHHSC----------------------------------
T ss_pred             CCCCcccccCCCCCcCCCcccccccCCcchhHHHHHHHHHHHhhhc----------------------------------
Confidence            9999999864  5567899999999999999999999974332100                                  


Q ss_pred             HHHHHHHHHhhhcccHHHHhcCCcccCCCCCCCccccCCCCCcchhhhcccccccccccchhhhHHhhhCCCCCCCcccc
Q 015243          228 DQYGRRIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTL  307 (410)
Q Consensus       228 ~~~a~~~f~~~F~~~I~~ll~~~~fw~~k~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (410)
                                                     |.                                               
T Consensus       234 -------------------------------~~-----------------------------------------------  235 (434)
T 1tt5_B          234 -------------------------------PF-----------------------------------------------  235 (434)
T ss_dssp             -------------------------------TT-----------------------------------------------
T ss_pred             -------------------------------cc-----------------------------------------------
Confidence                                           00                                               


Q ss_pred             hhchHHHHHHHHHHHHhhhhccCCccccCCcHHHHHHHHHHHHHHHHhcCCCCCChhHHHhhhccccchhhhHHHHHHHH
Q 015243          308 LESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGL  387 (410)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~p~~FeKDDd~hidFI~AasNLRA~ny~I~~~~~~~~k~iag~IiPAiatT~aivagl  387 (410)
                                           ..|+.||+||+.|++||++++|+||..|||+.++++.+++++|+|||||+||||||+|+
T Consensus       236 ---------------------~~~~~~d~d~~~~~~~v~~~a~~~~~~~gi~~~~~~~~~gv~~~iipaia~t~aiig~l  294 (434)
T 1tt5_B          236 ---------------------GEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAV  294 (434)
T ss_dssp             ---------------------CTTCCCCTTCHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred             ---------------------ccccccCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHhHhhccCcccccHHHHHHHH
Confidence                                 12347999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCc
Q 015243          388 IVIEAIKVLLKDT  400 (410)
Q Consensus       388 ~~~e~~k~~~~~~  400 (410)
                      +++|++|+|.|.-
T Consensus       295 ~a~EaiK~l~g~~  307 (434)
T 1tt5_B          295 CATEVFKIATSAY  307 (434)
T ss_dssp             HHHHHHHHHHTCS
T ss_pred             HHHHHHHHHhCCC
Confidence            9999999999853

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1

Probab=100.00  E-value=1.2e-52  Score=459.44  Aligned_cols=266  Identities=39%  Similarity=0.659  Sum_probs=243.8

Q ss_pred             CCCHHHHHHH-hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC
Q 015243            1 MVSERQLEAI-KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR   79 (410)
Q Consensus         1 ~~g~e~q~~L-~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~n   79 (410)
                      .+|.+.|+++ +++||+||||||+||+++++|+++|||+|+|+|+|+|+.|||+|||||+.+|||++|+++++++++++|
T Consensus       399 ~~g~~~~~~~l~~~~vlvvG~GglG~~~~~~L~~~Gvg~i~l~D~d~v~~snl~rq~~~~~~~vg~~Ka~~~~~~l~~~n  478 (805)
T 2nvu_B          399 EPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRV  478 (805)
T ss_dssp             CCCSHHHHHHHHTCCEEEECCSSHHHHHHHHHHTTTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCcEEEECCCeecccccccccccchhhcCChHHHHHHHHHHHHC
Confidence            3688999988 999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHC------------CCcEEEecccCccceEEEEe
Q 015243           80 PQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA------------DVPLVESGTTGFLGQVTVHV  147 (410)
Q Consensus        80 p~v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~------------~~p~i~~g~~G~~G~v~~~~  147 (410)
                      |+++|+++..++++.  +.++++++|+||+|+||.++|.++|+.|+..            ++|+|++++.|+.|++.++.
T Consensus       479 p~~~v~~~~~~~~~~--~~~~~~~~d~vv~~~d~~~~r~~in~~~~~~~~~~~g~~~~~~~~p~i~~~~~g~~G~~~~~~  556 (805)
T 2nvu_B          479 PNCNVVPHFNKIQDF--NDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVIL  556 (805)
T ss_dssp             TTCEEEEEESCGGGS--CHHHHHTCSEEEECCSCHHHHHHHHHHHHHTCCEETTEECGGGCCCEEEEEEETTEEEEEEEC
T ss_pred             CCCEEEEEecccccc--HHHHHhcCCEEEECCCCHHHHHHHHHHHHHHhhccccccccccCCcEEEeccccCceeEEEEC
Confidence            999999999998653  3689999999999999999999999999984            99999999999999999999


Q ss_pred             CCCCccccccCC--CCCCCCCceeeccCCCcchHHHHHHHHHHHHHHhCCCCccccccccCccccchhhHHhhhhcCCcc
Q 015243          148 KGKTECYECQPK--PAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDE  225 (410)
Q Consensus       148 ~~~t~c~~C~~~--~~~~~~p~cti~~~p~~~~h~i~~a~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (410)
                      |+.++||.|..+  |++..+|.|+++++|+.++|||.||+.++|+..+                                
T Consensus       557 p~~~~c~~c~~~~~p~~~~~~~c~~~~~~~~~~~~i~~a~~~~~~~~~--------------------------------  604 (805)
T 2nvu_B          557 PGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQ--------------------------------  604 (805)
T ss_dssp             TTTSCCTTTSGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHTHHHHHC--------------------------------
T ss_pred             CCCCCceeccCCCCCCCCCCCccccCCCCCCccHHHHHHHHhhccccc--------------------------------
Confidence            999999999864  5567899999999999999999999874332110                                


Q ss_pred             cHHHHHHHHHHhhhcccHHHHhcCCcccCCCCCCCccccCCCCCcchhhhcccccccccccchhhhHHhhhCCCCCCCcc
Q 015243          226 DIDQYGRRIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTW  305 (410)
Q Consensus       226 ~~~~~a~~~f~~~F~~~I~~ll~~~~fw~~k~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (410)
                                                       |.                                             
T Consensus       605 ---------------------------------~~---------------------------------------------  606 (805)
T 2nvu_B          605 ---------------------------------PF---------------------------------------------  606 (805)
T ss_dssp             ---------------------------------TT---------------------------------------------
T ss_pred             ---------------------------------CC---------------------------------------------
Confidence                                             00                                             


Q ss_pred             cchhchHHHHHHHHHHHHhhhhccCCccccCCcHHHHHHHHHHHHHHHHhcCCCCCChhHHHhhhccccchhhhHHHHHH
Q 015243          306 TLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIA  385 (410)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~FeKDDd~hidFI~AasNLRA~ny~I~~~~~~~~k~iag~IiPAiatT~aiva  385 (410)
                                             ..|+.||+||+.|++||++.+|+||..|||+..+++.+++++|+|||||+||||||+
T Consensus       607 -----------------------~~~~~~d~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~i~p~i~~~~aiig  663 (805)
T 2nvu_B          607 -----------------------GEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIA  663 (805)
T ss_dssp             -----------------------STTCCCCTTCHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHTCCCCCHHHHHHHH
T ss_pred             -----------------------CCcccCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHhcccccccchHHHHHH
Confidence                                   134579999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcc
Q 015243          386 GLIVIEAIKVLLKDTD  401 (410)
Q Consensus       386 gl~~~e~~k~~~~~~~  401 (410)
                      |++++|++|+|.|.-+
T Consensus       664 ~~~a~e~ik~l~~~~~  679 (805)
T 2nvu_B          664 AVCATEVFKIATSAYI  679 (805)
T ss_dssp             HHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHhcccc
Confidence            9999999999998533

>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus}

Probab=100.00  E-value=1.9e-45  Score=351.28  Aligned_cols=213  Identities=20%  Similarity=0.308  Sum_probs=140.0

Q ss_pred             CCCCCCCceeeccCCCcchHHHHHHHHHHHHHHhCCCCccc-c-ccccC--------c-cc--cchhhHHhhh---hcCC
Q 015243          160 PAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQEN-D-LNVRS--------S-DA--SSSAHAEDVF---VRRK  223 (410)
Q Consensus       160 ~~~~~~p~cti~~~p~~~~h~i~~a~~~~f~~~f~~~~~~~-~-~~~~~--------~-~~--~~~~~~~~~~---~~~~  223 (410)
                      .-++++|+|||++||+.++|||+|||+ +|+.+|+..++.. . +..++        . ..  ..++.+.+.+   .+..
T Consensus         9 ~~~ks~P~CTlrsfP~~i~HcI~WAr~-lFe~lF~~~~~~~n~~l~dp~~~~~~~~~~~~~~~~~l~~i~~~L~~~~p~~   87 (276)
T 1z7l_A            9 EFEKSIPICTLKNFPNAIEHTLQWARD-EFEGLFKQPAENVNQYLTDSKFVERTLRLAGTQPLEVLEAVQRSLVLQRPQT   87 (276)
T ss_dssp             -----CCHHHHHTCCCSHHHHHHHHHH-HHHHHHTHHHHHHHHHTTCSHHHHHHHTSSTTHHHHHHHHHHHHHTTTCCSS
T ss_pred             cCCCCCceeccCCCCCChhHHHHHHHH-HHHHHHcCCHHHHHHhhcChHHHHHHHhccchhhHHHHHHHHHHHhhcCCCc
Confidence            346899999999999999999999999 7999999654332 1 11110        0 00  1233444444   3567


Q ss_pred             cccHHHHHHHHHHhhhcccHHHHhcC----------CcccCC-CCCCCccccCCCC--Ccchhhhcccccccc---cccc
Q 015243          224 DEDIDQYGRRIYDHVFGYNIEVASSN----------EETWKN-RNRPKPIYSADVM--PENLTEQNGNVAKNC---VVDT  287 (410)
Q Consensus       224 ~~~~~~~a~~~f~~~F~~~I~~ll~~----------~~fw~~-k~~P~pl~~~~~~--~~~~~~~~~~~~~~~---~~~~  287 (410)
                      +++|++||+.+|+++|+++|+|||++          ++||++ ||+|+||.|+...  +..++..+++|.+..   ....
T Consensus        88 ~~~c~~~Ar~~F~k~F~~~I~qLL~~fP~D~~t~~G~~fWsg~Kr~P~PL~fd~~~~~h~~fI~aaa~L~A~~~gi~~~~  167 (276)
T 1z7l_A           88 WGDCVTWACHHWHTQYCNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVNNTLHLDYVMAAANLFAQTYGLTGSQ  167 (276)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHSCTTCBCTTSCBSSCSSCCCCCCCCCCTTSHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCcccCCCCCCCCCcccCCCchHHHHHHHHHHHHHHHHcCCCCCC
Confidence            89999999999999999999999987          899997 9999999999544  335555555554321   1111


Q ss_pred             hhhhH---HhhhCCCC--C---CCcccchhc------hHHHHHHHHHHHHhhh-------hccCCccccCCcHH--HHHH
Q 015243          288 SSVSA---MASLGLKN--P---QDTWTLLES------SRIFLEALKLFFAKRE-------KEIGNLSFDKDDQL--AVEF  344 (410)
Q Consensus       288 ~~~~~---~~~~~~~~--~---~~~~~~~~~------~~~~~~~~~~~~~~~~-------~~~~p~~FeKDDd~--hidF  344 (410)
                      +....   .....+.+  +   ..++. .+.      ...+.++++++..+..       ..+.|++||||||+  ||||
T Consensus       168 d~~~i~~~~~~~~vp~f~p~~~~ki~~-~e~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pl~FeKDDd~N~hmdF  246 (276)
T 1z7l_A          168 DRAAVASLLQSVQVPEFTPKSGVKIHV-SDQELQSANASVDDSRLEELKATLPSPDKLPGFKMYPIDFEKDDDSNFHMDF  246 (276)
T ss_dssp             CHHHHHHHHHTCCCCCCCCCSSCCCCS-SSCCC------CCSHHHHHHHHHSCCGGGSTTCCCCCCCCCSSCTTSSHHHH
T ss_pred             CHHHHHHHHhcCCCCCcCCcccccccc-chhhhchhcccccHHHHHHHHHHhhhhhhcccccCCCcceecCCCcccHHHH
Confidence            11111   11111100  0   01111 010      0112234555544321       24889999999999  9999


Q ss_pred             HHHHHHHHHHhcCCCCCChhHHHhhhcccc
Q 015243          345 VTAAANIRAASFGISLHSLFEAKGIAGNIV  374 (410)
Q Consensus       345 I~AasNLRA~ny~I~~~~~~~~k~iag~Ii  374 (410)
                      |+|||||||+||+||++||+++|+||||||
T Consensus       247 ItAaSNLRA~nY~I~~~dr~~~K~IAG~II  276 (276)
T 1z7l_A          247 IVAASNLRAENYDISPADRHKSKLIAGKII  276 (276)
T ss_dssp             HHHHHHHHHHHTTCCCCCHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHcCCCcCCHHHHHHHhCCcC
Confidence            999999999999999999999999999998

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=100.00  E-value=7.5e-39  Score=317.65  Aligned_cols=155  Identities=21%  Similarity=0.424  Sum_probs=147.3

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      +|.++|++|++++|+|||+||+||+++++|+++|||+|+|+|+|.|+.+||+|||||+.+|+|++|+++++++++++||+
T Consensus        26 ~G~~~q~~L~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~  105 (346)
T 1y8q_A           26 WGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPM  105 (346)
T ss_dssp             HCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTT
T ss_pred             hCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCC
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK  159 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~  159 (410)
                      ++|+++...+++  ...++++++|+||+|+|+.++|.+++++|+++++|+|++++.|+.|+++++++ .++|+.|.++
T Consensus       106 v~v~~~~~~~~~--~~~~~~~~~dvVv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~G~~G~v~~d~~-~~~~~~~~~~  180 (346)
T 1y8q_A          106 VDVKVDTEDIEK--KPESFFTQFDAVCLTCCSRDVIVKVDQICHKNSIKFFTGDVFGYHGYTFANLG-EHEFVEEKTK  180 (346)
T ss_dssp             SEEEEECSCGGG--CCHHHHTTCSEEEEESCCHHHHHHHHHHHHHTTCEEEEEEEEBTEEEEEEECS-EEEEEEECC-
T ss_pred             eEEEEEecccCc--chHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEeecccEEEEEEecC-CCCEEEcCCC
Confidence            999999988854  35689999999999999999999999999999999999999999999999986 6889999765

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=100.00  E-value=9e-37  Score=294.74  Aligned_cols=158  Identities=27%  Similarity=0.537  Sum_probs=130.6

Q ss_pred             CCH-HHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC
Q 015243            2 VSE-RQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP   80 (410)
Q Consensus         2 ~g~-e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np   80 (410)
                      +|. ++|++|++++|+|||+||+||+++++|+++|||+|+|+|+|+|+.|||+||+ |+.+|+|++|+++++++++++||
T Consensus        25 ~G~~~~q~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~-~~~~diG~~Ka~aa~~~L~~iNP  103 (292)
T 3h8v_A           25 MGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF-FQPHQAGLSKVQAAEHTLRNINP  103 (292)
T ss_dssp             -------CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC-------------CCTTSBHHHHHHHHHHHHCT
T ss_pred             cChHHHHHHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhccccc-CChhhcCchHHHHHHHHHHhhCC
Confidence            466 8999999999999999999999999999999999999999999999999997 79999999999999999999999


Q ss_pred             CCeEEEEccCCCCCcchHhhh-----------ccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccC--ccceEEEEe
Q 015243           81 QMSITAHHANVKDPKFNVEFF-----------KQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTG--FLGQVTVHV  147 (410)
Q Consensus        81 ~v~i~~~~~~i~~~~~~~~~~-----------~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G--~~G~v~~~~  147 (410)
                      +++|+++..++++....++|+           +++|+||+|+||+++|.++|+.|+++++|+|++|+.|  +.|++.++.
T Consensus       104 ~v~v~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn~~~R~~in~~c~~~~~Pli~~gv~~~~~~Gqv~~~~  183 (292)
T 3h8v_A          104 DVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLII  183 (292)
T ss_dssp             TSEEEEECCCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEECTTSSEEEEEEEC
T ss_pred             CcEEEEecccCCcHHHHHHHhhhhcccccccCCCCCEEEECCcchhhhhHHHHHHHHhCCCEEEeeeecceeEEEEEEEC
Confidence            999999999987532223454           6899999999999999999999999999999999985  889999999


Q ss_pred             CCCCccccccCCC
Q 015243          148 KGKTECYECQPKP  160 (410)
Q Consensus       148 ~~~t~c~~C~~~~  160 (410)
                      |+.++||+|.++.
T Consensus       184 pg~t~Cy~Cl~p~  196 (292)
T 3h8v_A          184 PGESACFACAPPL  196 (292)
T ss_dssp             TTTSCCTTSSSCC
T ss_pred             CCCCCCHhhcCCc
Confidence            9999999999764

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=100.00  E-value=5.6e-36  Score=311.55  Aligned_cols=178  Identities=20%  Similarity=0.313  Sum_probs=162.1

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      +|.++|++|++++|+|||+||+||+++|+|+++|||+|+|+|+|+|+.+||+|||||+.+|||++|+++++++++++||+
T Consensus        22 ~G~~~q~~L~~~~VlvvG~GGlGseiak~La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lNp~  101 (531)
T 1tt5_A           22 WGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSD  101 (531)
T ss_dssp             HHHHHHHHHHHCEEEEECCSHHHHHHHHHHHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTCTT
T ss_pred             cCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHhCCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEccCCCCC-cchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCCC
Q 015243           82 MSITAHHANVKDP-KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP  160 (410)
Q Consensus        82 v~i~~~~~~i~~~-~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~~  160 (410)
                      ++|+++...+++. ....++++++|+||+|+||.++|.+++++|+.+++|+|++++.|+.|+++++.| ...|++|.+  
T Consensus       102 v~v~~~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~ln~~c~~~~iplI~~~~~G~~G~v~~~~p-~~~~~d~~~--  178 (531)
T 1tt5_A          102 VSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIK-EHPVIESHP--  178 (531)
T ss_dssp             SBCCEESSCHHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHTTCCEEEEEEETTEEEEEEECS-CEEESCCCC--
T ss_pred             CeEEEeCCCcchhhhhhHHHhcCCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEecCCeEEEEEEcC-CceeccCCC--
Confidence            9999998877421 124578999999999999999999999999999999999999999999999999 456666543  


Q ss_pred             CCCCCCceeeccCCCcchHHHH
Q 015243          161 APKTYPVCTITSTPSKFVHCIV  182 (410)
Q Consensus       161 ~~~~~p~cti~~~p~~~~h~i~  182 (410)
                      ++..+|.|++..+|..+.||-.
T Consensus       179 ~~~~~~lr~~~p~P~~~~~~~~  200 (531)
T 1tt5_A          179 DNALEDLRLDKPFPELREHFQS  200 (531)
T ss_dssp             SSCCCCCCSSSCCHHHHHHHHT
T ss_pred             CCCCCcccccCCCCCchhhhhc
Confidence            3567899999999999988843

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=100.00  E-value=8.9e-35  Score=285.25  Aligned_cols=191  Identities=24%  Similarity=0.382  Sum_probs=158.2

Q ss_pred             CCCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC
Q 015243            1 MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP   80 (410)
Q Consensus         1 ~~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np   80 (410)
                      ++++.++++|+++||+|||+||+||+++++|+++|||+|+|+|.|+|+.|||+||+||+.+|+|++|+++++++++++||
T Consensus        23 ll~~~g~~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP  102 (340)
T 3rui_A           23 ILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFP  102 (340)
T ss_dssp             TCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCT
T ss_pred             hcchhhHHHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCC
Confidence            36777889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEccCCCC--------------CcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEE
Q 015243           81 QMSITAHHANVKD--------------PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVH  146 (410)
Q Consensus        81 ~v~i~~~~~~i~~--------------~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~  146 (410)
                      +++++++..++..              .....++++++|+|++|+||.++|.+++++|+.+++|+|+++ .|+.|++.+.
T Consensus       103 ~v~v~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tDn~~tR~lin~~c~~~~~plI~aa-~G~~G~l~v~  181 (340)
T 3rui_A          103 LMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVINAA-LGFDSYLVMR  181 (340)
T ss_dssp             TCEEEEECCCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSTGGGHHHHHHHHHTTCEEEEEE-ECSSEEEEEE
T ss_pred             CCEEEEEeccccccCcccchhhhhcCCHHHHHhhhccCCEEEecCCCHHHHHHHHHHHHHcCCcEEEee-ecceEEEEEe
Confidence            9999999876521              011246889999999999999999999999999999999986 8999999886


Q ss_pred             e-------CCCCccccccCCCCCC-C------CCceeeccCCCcchHHHHHHHHHHHHHHhC
Q 015243          147 V-------KGKTECYECQPKPAPK-T------YPVCTITSTPSKFVHCIVWAKDLLFAKLFG  194 (410)
Q Consensus       147 ~-------~~~t~c~~C~~~~~~~-~------~p~cti~~~p~~~~h~i~~a~~~~f~~~f~  194 (410)
                      .       |+.++||.|.+...|. +      .+.|++.. |....-...-|.| ....+.+
T Consensus       182 ~g~~~~~~~~~~~Cy~C~~~~~p~~~~~~~t~~~~c~v~~-p~vg~igs~qA~E-~lk~l~~  241 (340)
T 3rui_A          182 HGNRDEQSSKQLGCYFCHDVVAPTDSLTDRTLDQMSTVTR-PGVAMMASSLAVE-LMTSLLQ  241 (340)
T ss_dssp             CCCCCSSCCCCBCCGGGGSSSCCCCCTTTCCCGGGGGCSC-HHHHHHHHHHHHH-HHHHHTS
T ss_pred             ecccccCCCCCCCeeeeCCCCCCcccccccccCCCcceec-chHHHHHHHHHHH-HHHHHhC
Confidence            3       4679999999642221 1      25688432 2222333345676 4666654

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=100.00  E-value=1.1e-34  Score=275.83  Aligned_cols=167  Identities=26%  Similarity=0.478  Sum_probs=148.6

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      +|+++|++|++++|+|+|+||+|++++++|+++|+|+|+|+|.|.|+.+||+||+||+.+|+|++|+++++++++++||+
T Consensus        18 ~g~~~q~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~   97 (251)
T 1zud_1           18 IALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPD   97 (251)
T ss_dssp             THHHHHHHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTT
T ss_pred             cCHHHHHHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCC-CccccccCCC
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGK-TECYECQPKP  160 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~-t~c~~C~~~~  160 (410)
                      ++|+.+...+++.. ..++++++|+||+|+|+.++|..+++.|+++++|+|++++.|+.|++.++.|+. ++||.|..+.
T Consensus        98 ~~v~~~~~~~~~~~-~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v~~~~p~~~~~c~~cl~~~  176 (251)
T 1zud_1           98 IQLTALQQRLTGEA-LKDAVARADVVLDCTDNMATRQEINAACVALNTPLITASAVGFGGQLMVLTPPWEQGCYRCLWPD  176 (251)
T ss_dssp             SEEEEECSCCCHHH-HHHHHHHCSEEEECCSSHHHHHHHHHHHHHTTCCEEEEEEEBTEEEEEEECTTCTTCCHHHHCC-
T ss_pred             CEEEEEeccCCHHH-HHHHHhcCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEeccccceEEEEEccCCCCCcEEEeCCC
Confidence            99999988875432 346789999999999999999999999999999999999999999999998887 7999998764


Q ss_pred             CCCCCCcee
Q 015243          161 APKTYPVCT  169 (410)
Q Consensus       161 ~~~~~p~ct  169 (410)
                      .+...+.|.
T Consensus       177 ~~~~~~~~~  185 (251)
T 1zud_1          177 NQEPERNCR  185 (251)
T ss_dssp             ---------
T ss_pred             CCCCCCccc
Confidence            433334564

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=100.00  E-value=3.3e-33  Score=277.87  Aligned_cols=156  Identities=32%  Similarity=0.496  Sum_probs=145.3

Q ss_pred             CHHH-HHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            3 SERQ-LEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         3 g~e~-q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      +.++ |++|++++|+|||+||+||+++++|+++|||+|+|+|.|.|+.+||+||+||+.+|+|++|+++++++++++||+
T Consensus       108 ~~~~~q~~L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~  187 (353)
T 3h5n_A          108 NPVLVQDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSE  187 (353)
T ss_dssp             CHHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTT
T ss_pred             ChHHHHHHHhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCC
Confidence            4566 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccCChH-HHHHHHHHHHHCCCcEEEecccCccceEEEE-eCCCCccccccCC
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLD-ARRHVNRLCLAADVPLVESGTTGFLGQVTVH-VKGKTECYECQPK  159 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~-~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~-~~~~t~c~~C~~~  159 (410)
                      ++|+++...+++.....+ ++++|+||+|+||.+ +|.++++.|+++++|+|.+++.|..|++..+ .|+.++||.|...
T Consensus       188 v~v~~~~~~i~~~~~~~~-~~~~DlVvd~~Dn~~~~r~~ln~~c~~~~~p~i~~~~~g~~g~~g~~~~p~~~~C~~C~~~  266 (353)
T 3h5n_A          188 ISVSEIALNINDYTDLHK-VPEADIWVVSADHPFNLINWVNKYCVRANQPYINAGYVNDIAVFGPLYVPGKTGCYECQKV  266 (353)
T ss_dssp             SEEEEEECCCCSGGGGGG-SCCCSEEEECCCCSTTHHHHHHHHHHHTTCCEEEEEEETTEEEEEEEECTTTSCCTTTTC-
T ss_pred             CeEEEeecccCchhhhhH-hccCCEEEEecCChHHHHHHHHHHHHHhCCCEEEEEEeCCEEEEEEEEcCCCCCChhhcCC
Confidence            999999999976652334 899999999999999 9999999999999999999999999998765 5999999999975

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=100.00  E-value=1.9e-33  Score=266.91  Aligned_cols=168  Identities=34%  Similarity=0.573  Sum_probs=149.3

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      +|+++|++|++++|+|+|+||+|++++++|+++|+++|+|+|.|.|+.+||+||+||+.+|+|++|+++++++++++||+
T Consensus        21 ~g~~~q~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~  100 (249)
T 1jw9_B           21 FDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPH  100 (249)
T ss_dssp             THHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTT
T ss_pred             cCHHHHHHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCC-CccccccCCC
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGK-TECYECQPKP  160 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~-t~c~~C~~~~  160 (410)
                      ++++.+...+++. ...++++++|+||+|+|+.++|..+++.|++.++|+|+++..|+.|++.++.|+. ++||.|..+.
T Consensus       101 ~~v~~~~~~~~~~-~~~~~~~~~DvVi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~g~v~~~~p~~~~~c~~c~~~~  179 (249)
T 1jw9_B          101 IAITPVNALLDDA-ELAALIAEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFTYQDGEPCYRCLSRL  179 (249)
T ss_dssp             SEEEEECSCCCHH-HHHHHHHTSSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEEEBTEEEEEEECCCTTCCCTHHHHTT
T ss_pred             cEEEEEeccCCHh-HHHHHHhCCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEeeeccceEEEEEEeCCCCCCceEEECCC
Confidence            9999998887542 2246789999999999999999999999999999999999999999999998877 7999998654


Q ss_pred             CCCCCCceee
Q 015243          161 APKTYPVCTI  170 (410)
Q Consensus       161 ~~~~~p~cti  170 (410)
                      .+...+.|..
T Consensus       180 ~~~~~~~c~~  189 (249)
T 1jw9_B          180 FGENALTCVE  189 (249)
T ss_dssp             CCC-------
T ss_pred             CCcccccccc
Confidence            4333345653

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=100.00  E-value=2.8e-33  Score=291.13  Aligned_cols=190  Identities=24%  Similarity=0.400  Sum_probs=157.1

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      +|+.++++|+++||+|||+||+||+++++|+++|||+|+|+|+|+|+.|||+||+||+.+|+|++|+++++++++++||+
T Consensus       316 lp~~g~ekL~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~  395 (615)
T 4gsl_A          316 LPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPL  395 (615)
T ss_dssp             CTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTT
T ss_pred             cchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCC
Confidence            57778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEccCCCC--------------CcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEe
Q 015243           82 MSITAHHANVKD--------------PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHV  147 (410)
Q Consensus        82 v~i~~~~~~i~~--------------~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~  147 (410)
                      ++|+++..++..              .....++++++|+||+|+||.++|.+++++|+.+++|+|+++ .|+.|++.+..
T Consensus       396 V~v~~~~~~Ipm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~tDn~~tR~~ln~~c~~~~~PlI~aa-lG~~Gql~v~~  474 (615)
T 4gsl_A          396 MDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVINAA-LGFDSYLVMRH  474 (615)
T ss_dssp             CEEEEECCCCCCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSGGGTHHHHHHHHHTTCEEEEEE-ECSSEEEEEEC
T ss_pred             cEEEEeeccccccCccccchhhhcCCHHHHHHHhhcCCEEEecCCCHHHHHHHHHHHHHcCCeEEEEE-ccceeEEEEee
Confidence            999999876521              011246789999999999999999999999999999999986 89999998763


Q ss_pred             -------CCCCccccccCCCCCC-C------CCceeeccCCCcchHHHHHHHHHHHHHHhC
Q 015243          148 -------KGKTECYECQPKPAPK-T------YPVCTITSTPSKFVHCIVWAKDLLFAKLFG  194 (410)
Q Consensus       148 -------~~~t~c~~C~~~~~~~-~------~p~cti~~~p~~~~h~i~~a~~~~f~~~f~  194 (410)
                             |+.++||.|.+...|. +      .+.|++.. |....-...-|.| +...+.+
T Consensus       475 g~~~~~~~~~~~CY~Cl~~~~P~~~~~~rtl~~~C~Vl~-P~vgiigs~qA~E-aLk~Ll~  533 (615)
T 4gsl_A          475 GNRDEQSSKQLGCYFCHDVVAPTDSLTDRTLDQMCTVTR-PGVAMMASSLAVE-LMTSLLQ  533 (615)
T ss_dssp             CC------CCCCCTTTSCSSCTTSCTTTTTTTCTTCCCC-HHHHHHHHHHHHH-HHHHHHS
T ss_pred             cccccCCCCCCCceeeCCCCCCcccccccccccCcceec-chHHHHHHHHHHH-HHHHHhC
Confidence                   4678999999642221 1      25688432 2222333345676 4566654

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=100.00  E-value=1.1e-32  Score=286.59  Aligned_cols=191  Identities=24%  Similarity=0.393  Sum_probs=158.0

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      +|+.+|++|++++|+||||||+||+++++|+++|||+|+|+|+|+|+.|||+||+||+.+|+|++|+++++++++++||+
T Consensus       317 l~~~gq~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP~  396 (598)
T 3vh1_A          317 LPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPL  396 (598)
T ss_dssp             CTTCCHHHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCTT
T ss_pred             cchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHCCC
Confidence            46677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEccCCCC--------------CcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEe
Q 015243           82 MSITAHHANVKD--------------PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHV  147 (410)
Q Consensus        82 v~i~~~~~~i~~--------------~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~  147 (410)
                      ++|+++..++..              .....++++++|+||+|+||.++|..++++|+.+++|+|++ +.|+.|++.+..
T Consensus       397 v~v~~~~~~I~~pgh~i~~~~~~~l~~~~l~~li~~~DvVvdatDn~~tR~lin~~c~~~~~plI~a-a~G~~Gqv~v~~  475 (598)
T 3vh1_A          397 MDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVINA-ALGFDSYLVMRH  475 (598)
T ss_dssp             CEEEEECCCCCCSSCCCCSHHHHHHHHHHHHHHHHHCSEEEECCSBGGGTHHHHHHHHHTTCEEEEE-EECSSEEEEEEE
T ss_pred             cEEEEEeccccccCcccccccccccCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHhcCCCEEEE-EECCccEEEEEc
Confidence            999999877521              01124688999999999999999999999999999999996 689999998774


Q ss_pred             C-------CCCccccccCCCCCCC-------CCceeeccCCCcchHHHHHHHHHHHHHHhCC
Q 015243          148 K-------GKTECYECQPKPAPKT-------YPVCTITSTPSKFVHCIVWAKDLLFAKLFGD  195 (410)
Q Consensus       148 ~-------~~t~c~~C~~~~~~~~-------~p~cti~~~p~~~~h~i~~a~~~~f~~~f~~  195 (410)
                      +       +.++||.|.....|..       .+.|++.. |.....+...|.| ....+.+.
T Consensus       476 g~~p~~~~~~~~Cy~Cl~~~~p~~~~~~~tld~~C~Vl~-p~vgvigslqA~E-alk~Llg~  535 (598)
T 3vh1_A          476 GNRDEQSSKQLGCYFCHDVVAPTDSLTDRTLDQMCTVTR-PGVAMMASSLAVE-LMTSLLQT  535 (598)
T ss_dssp             C--------CBCCTTTSCSSCSSSCTTTTTTTBSCCCSC-THHHHHHHHHHHH-HHHHHHSC
T ss_pred             cCCCccCCCCCCceeecCccCCCccccccccCCCCCccC-cHHHHHHHHHHHH-HHHHHhCC
Confidence            2       3578999985432211       25687532 3333344556787 56777654

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.9e-31  Score=294.00  Aligned_cols=174  Identities=20%  Similarity=0.413  Sum_probs=157.6

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      +|.++|++|++++|+|||+||+||+++++|+++|||+|+|+|+|.|+.+||+||||++.+|+|++|+++++++|+++||+
T Consensus        17 ~G~~~q~rL~~s~VlIvG~GGlGseiak~La~aGVg~itlvD~D~V~~sNL~RQ~l~~~~dvG~~Ka~a~~~~L~~lNP~   96 (1015)
T 3cmm_A           17 LGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIGQKRGDVTRAKLAELNAY   96 (1015)
T ss_dssp             SCHHHHHHHTTCEEEEECCSHHHHHHHHHHHHHCCSEEEEECCSBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHTTSCTT
T ss_pred             cCHHHHHHHhcCEEEEECCChHHHHHHHHHHHcCCCeEEEecCCEechhhhccccccChhhcChHHHHHHHHHHHHHCCC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccC-ChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCC-
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLD-NLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK-  159 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~D-n~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~-  159 (410)
                      ++|+++...+++     ++++++|+||+|+| +.++|..++++|+.+++|+|.+++.|+.|++++..   .+||.|... 
T Consensus        97 v~v~~~~~~l~~-----~~l~~~DvVv~~~d~~~~~r~~ln~~c~~~~iplI~~~~~G~~G~v~~d~---~~~~~c~~~~  168 (1015)
T 3cmm_A           97 VPVNVLDSLDDV-----TQLSQFQVVVATDTVSLEDKVKINEFCHSSGIRFISSETRGLFGNTFVDL---GDEFTVLDPT  168 (1015)
T ss_dssp             SCEEECCCCCCS-----TTGGGCSEEEECTTSCHHHHHHHHHHHHHHTCEEEEEEEETTEEEEEEEC---CSCEEESBSS
T ss_pred             CeEEEecCCCCH-----HHHhcCCEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEEecccEEEEEecC---CCceEEeeCC
Confidence            999999888743     57899999999999 99999999999999999999999999999998754   568888754 


Q ss_pred             -CCCCCCCceeeccCCCcchHHHHHHH
Q 015243          160 -PAPKTYPVCTITSTPSKFVHCIVWAK  185 (410)
Q Consensus       160 -~~~~~~p~cti~~~p~~~~h~i~~a~  185 (410)
                       ++|.++++|++ +.| ..+||+.+.+
T Consensus       169 ~~~p~~~~i~~i-~~p-~~v~~l~~~~  193 (1015)
T 3cmm_A          169 GEEPRTGMVSDI-EPD-GTVTMLDDNR  193 (1015)
T ss_dssp             CCCCCEEEEEEE-CTT-CEEEESTTCC
T ss_pred             CCCCccccccCC-CCC-ceeEeeeccc
Confidence             34567788888 555 4688876433

>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus}

Probab=98.75  E-value=5.3e-09  Score=99.57  Aligned_cols=62  Identities=18%  Similarity=0.369  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHh----------------hhhccCCccccCCcHHHHHHHHHHHHHHHHhcCCCC-CChhHHHhhhccc
Q 015243          312 RIFLEALKLFFAK----------------REKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISL-HSLFEAKGIAGNI  373 (410)
Q Consensus       312 ~~~~~~~~~~~~~----------------~~~~~~p~~FeKDDd~hidFI~AasNLRA~ny~I~~-~~~~~~k~iag~I  373 (410)
                      +.|...+++++..                ++..+.|++||..|+.|++||.|||||||.+|||+. .|+-.+..++.++
T Consensus       101 k~F~~~I~qLL~~fP~D~~t~~G~~fWsg~Kr~P~PL~fd~~~~~h~~fI~aaa~L~A~~~gi~~~~d~~~i~~~~~~~  179 (276)
T 1z7l_A          101 TQYCNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVNNTLHLDYVMAAANLFAQTYGLTGSQDRAAVASLLQSV  179 (276)
T ss_dssp             HHHTHHHHHHHHHSCTTCBCTTSCBSSCSSCCCCCCCCCCTTSHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhCCccccccCCCcccCCCCCCCCCcccCCCchHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhcC
Confidence            4666788888865                123488999999999999999999999999999986 6777777777665

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.89  E-value=6.1e-05  Score=60.87  Aligned_cols=96  Identities=19%  Similarity=0.203  Sum_probs=66.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      .++|+|+|+|++|..+++.|...|..+++++|.+                   ..|.+.+.      .+.+.  ....++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~-------------------~~~~~~~~------~~~~~--~~~~d~   57 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHD-------------------LAALAVLN------RMGVA--TKQVDA   57 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC-------------------HHHHHHHH------TTTCE--EEECCT
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC-------------------HHHHHHHH------hCCCc--EEEecC
Confidence            4689999999999999999999997778888843                   12222221      23333  334445


Q ss_pred             CCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEec
Q 015243           92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (410)
Q Consensus        92 ~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g  135 (410)
                      .+.....+.++++|+||+++. ......+.+.|.+.++++++..
T Consensus        58 ~~~~~~~~~~~~~d~vi~~~~-~~~~~~~~~~~~~~g~~~~~~~  100 (118)
T 3ic5_A           58 KDEAGLAKALGGFDAVISAAP-FFLTPIIAKAAKAAGAHYFDLT  100 (118)
T ss_dssp             TCHHHHHHHTTTCSEEEECSC-GGGHHHHHHHHHHTTCEEECCC
T ss_pred             CCHHHHHHHHcCCCEEEECCC-chhhHHHHHHHHHhCCCEEEec
Confidence            433333456789999999985 3445667788899999988754

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.74  E-value=6.8e-05  Score=71.65  Aligned_cols=79  Identities=24%  Similarity=0.346  Sum_probs=63.1

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      +.+++++|+|+||+|..++..|+..|+++++|+|.+                   ..|++.+++.+....|.+++.....
T Consensus       125 l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~-------------------~~~a~~la~~~~~~~~~~~i~~~~~  185 (283)
T 3jyo_A          125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD-------------------TSRAQALADVINNAVGREAVVGVDA  185 (283)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSS-------------------HHHHHHHHHHHHHHHTSCCEEEECS
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECC-------------------HHHHHHHHHHHHhhcCCceEEEcCH
Confidence            568899999999999999999999999999998643                   3588888888888877777766531


Q ss_pred             CCCCCcchHhhhccCcEEEEccC
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                        .  . ..+.+.++|+||+|+.
T Consensus       186 --~--~-l~~~l~~~DiVInaTp  203 (283)
T 3jyo_A          186 --R--G-IEDVIAAADGVVNATP  203 (283)
T ss_dssp             --T--T-HHHHHHHSSEEEECSS
T ss_pred             --H--H-HHHHHhcCCEEEECCC
Confidence              1  1 2355678999999974

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.58  E-value=0.00053  Score=58.87  Aligned_cols=103  Identities=13%  Similarity=0.113  Sum_probs=63.5

Q ss_pred             HHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         8 ~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .++.+.+|+|+|+|.+|..+++.|...|. +++++|.+.-....+.+.                        .+..  ..
T Consensus        15 ~~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~------------------------~g~~--~~   67 (155)
T 2g1u_A           15 KKQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNSE------------------------FSGF--TV   67 (155)
T ss_dssp             --CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCTT------------------------CCSE--EE
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHhc------------------------CCCc--EE
Confidence            45678899999999999999999999997 799998764322222100                        0111  11


Q ss_pred             ccCCCCCcchHh-hhccCcEEEEccCChHHHHHHHHHHHH-CCCcEEEeccc
Q 015243           88 HANVKDPKFNVE-FFKQFNVVLNGLDNLDARRHVNRLCLA-ADVPLVESGTT  137 (410)
Q Consensus        88 ~~~i~~~~~~~~-~~~~~DvVi~a~Dn~~~r~~i~~~c~~-~~~p~i~~g~~  137 (410)
                      ..+..+...... -+.++|+||.++.+......+...++. .+...+.+...
T Consensus        68 ~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~  119 (155)
T 2g1u_A           68 VGDAAEFETLKECGMEKADMVFAFTNDDSTNFFISMNARYMFNVENVIARVY  119 (155)
T ss_dssp             ESCTTSHHHHHTTTGGGCSEEEECSSCHHHHHHHHHHHHHTSCCSEEEEECS
T ss_pred             EecCCCHHHHHHcCcccCCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEEEEC
Confidence            111111000001 146799999999988877777777776 55555544433

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.54  E-value=0.00076  Score=56.63  Aligned_cols=97  Identities=13%  Similarity=0.112  Sum_probs=63.1

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      +...+|+|+|+|.+|..+++.|...|. +++++|.|.                   .+.+.+    ++.  ..  .....
T Consensus         4 ~~~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~-------------------~~~~~~----~~~--~~--~~~~g   55 (141)
T 3llv_A            4 NGRYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSK-------------------EKIELL----EDE--GF--DAVIA   55 (141)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCH-------------------HHHHHH----HHT--TC--EEEEC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCH-------------------HHHHHH----HHC--CC--cEEEC
Confidence            446799999999999999999999997 588988541                   122222    221  22  33344


Q ss_pred             CCCCCcchHh-hhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEe
Q 015243           90 NVKDPKFNVE-FFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVES  134 (410)
Q Consensus        90 ~i~~~~~~~~-~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~  134 (410)
                      +.++...-.. -+.++|+||.++++.+....+...+++.+.+.+-+
T Consensus        56 d~~~~~~l~~~~~~~~d~vi~~~~~~~~n~~~~~~a~~~~~~~iia  101 (141)
T 3llv_A           56 DPTDESFYRSLDLEGVSAVLITGSDDEFNLKILKALRSVSDVYAIV  101 (141)
T ss_dssp             CTTCHHHHHHSCCTTCSEEEECCSCHHHHHHHHHHHHHHCCCCEEE
T ss_pred             CCCCHHHHHhCCcccCCEEEEecCCHHHHHHHHHHHHHhCCceEEE
Confidence            4443221111 24689999999998888777777777765544433

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.51  E-value=0.00087  Score=55.81  Aligned_cols=97  Identities=20%  Similarity=0.293  Sum_probs=58.0

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      ++..++|+|+|+|++|..+++.|...|. +++++|.+.-....                       +++.  ...  ...
T Consensus         3 ~~~~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~~~~~~~-----------------------~~~~--~~~--~~~   54 (144)
T 2hmt_A            3 RIKNKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNA-----------------------YASY--ATH--AVI   54 (144)
T ss_dssp             ---CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHT-----------------------TTTT--CSE--EEE
T ss_pred             CCcCCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH-----------------------HHHh--CCE--EEE
Confidence            4667899999999999999999999996 58888865311111                       1111  111  122


Q ss_pred             cCCCCCcchHh-hhccCcEEEEccCCh-HHHHHHHHHHHHCCCcEEE
Q 015243           89 ANVKDPKFNVE-FFKQFNVVLNGLDNL-DARRHVNRLCLAADVPLVE  133 (410)
Q Consensus        89 ~~i~~~~~~~~-~~~~~DvVi~a~Dn~-~~r~~i~~~c~~~~~p~i~  133 (410)
                      .+.++...-.. -+.++|+|+.++.+. +....+...++..+.+.+-
T Consensus        55 ~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~~~~~~~ii  101 (144)
T 2hmt_A           55 ANATEENELLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIW  101 (144)
T ss_dssp             CCTTCHHHHHTTTGGGCSEEEECCCSCHHHHHHHHHHHHHTTCSEEE
T ss_pred             eCCCCHHHHHhcCCCCCCEEEECCCCchHHHHHHHHHHHHcCCCeEE
Confidence            22222111111 156899999998864 5555666777776654443

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.46  E-value=0.0002  Score=65.98  Aligned_cols=94  Identities=18%  Similarity=0.233  Sum_probs=67.2

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      .|++++|+|||.|.+|...++.|...|. +++++|++.-                  +.   +.+...+  ..  ++...
T Consensus        28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap~~~------------------~~---l~~l~~~--~~--i~~i~   81 (223)
T 3dfz_A           28 DLKGRSVLVVGGGTIATRRIKGFLQEGA-AITVVAPTVS------------------AE---INEWEAK--GQ--LRVKR   81 (223)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHGGGCC-CEEEECSSCC------------------HH---HHHHHHT--TS--CEEEC
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCC------------------HH---HHHHHHc--CC--cEEEE
Confidence            4789999999999999999999999996 5999986411                  01   1222211  22  33333


Q ss_pred             cCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEe
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVES  134 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~  134 (410)
                      ...     ..+.+.++|+||.|+|+.+....+...|. .++|+-.+
T Consensus        82 ~~~-----~~~dL~~adLVIaAT~d~~~N~~I~~~ak-~gi~VNvv  121 (223)
T 3dfz_A           82 KKV-----GEEDLLNVFFIVVATNDQAVNKFVKQHIK-NDQLVNMA  121 (223)
T ss_dssp             SCC-----CGGGSSSCSEEEECCCCTHHHHHHHHHSC-TTCEEEC-
T ss_pred             CCC-----CHhHhCCCCEEEECCCCHHHHHHHHHHHh-CCCEEEEe
Confidence            333     34557899999999999999888988887 88875433

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=97.27  E-value=0.0012  Score=66.10  Aligned_cols=101  Identities=22%  Similarity=0.295  Sum_probs=71.8

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhC-C-CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSG-F-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~G-v-~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      ++|+|+|+|++|..+++.|+..| + ..++++|.+                   ..|++.+++.+....+ .++.....+
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~-------------------~~~~~~la~~l~~~~~-~~~~~~~~D   61 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRT-------------------LSKCQEIAQSIKAKGY-GEIDITTVD   61 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESC-------------------HHHHHHHHHHHHHTTC-CCCEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECC-------------------HHHHHHHHHHhhhhcC-CceEEEEec
Confidence            58999999999999999999988 3 688888733                   2466666666654331 234445555


Q ss_pred             CCCCcchHhhhcc--CcEEEEccCChHHHHHHHHHHHHCCCcEEEe
Q 015243           91 VKDPKFNVEFFKQ--FNVVLNGLDNLDARRHVNRLCLAADVPLVES  134 (410)
Q Consensus        91 i~~~~~~~~~~~~--~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~  134 (410)
                      +++...-.+.+++  .|+||+++... ....+.+.|.+.++.+++.
T Consensus        62 ~~d~~~l~~~l~~~~~DvVin~ag~~-~~~~v~~a~l~~g~~vvD~  106 (405)
T 4ina_A           62 ADSIEELVALINEVKPQIVLNIALPY-QDLTIMEACLRTGVPYLDT  106 (405)
T ss_dssp             TTCHHHHHHHHHHHCCSEEEECSCGG-GHHHHHHHHHHHTCCEEES
T ss_pred             CCCHHHHHHHHHhhCCCEEEECCCcc-cChHHHHHHHHhCCCEEEe
Confidence            5443333456666  89999997643 3456778899999999985

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.17  E-value=0.0019  Score=55.07  Aligned_cols=93  Identities=11%  Similarity=0.065  Sum_probs=61.7

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      .+.+|+|+|+|.+|..+++.|...|. .++++|.|.-                  .+.+.+.+.   ...++  .....+
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~~~------------------~~~~~~~~~---~~~~~--~~i~gd   57 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPE------------------DDIKQLEQR---LGDNA--DVIPGD   57 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCH------------------HHHHHHHHH---HCTTC--EEEESC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCh------------------HHHHHHHHh---hcCCC--eEEEcC
Confidence            46789999999999999999999996 4889885410                  122222221   11233  334455


Q ss_pred             CCCCcch-HhhhccCcEEEEccCChHHHHHHHHHHHHC
Q 015243           91 VKDPKFN-VEFFKQFNVVLNGLDNLDARRHVNRLCLAA  127 (410)
Q Consensus        91 i~~~~~~-~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~  127 (410)
                      .++...- ..-+.++|+||.++++.+....+...+++.
T Consensus        58 ~~~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~~   95 (153)
T 1id1_A           58 SNDSSVLKKAGIDRCRAILALSDNDADNAFVVLSAKDM   95 (153)
T ss_dssp             TTSHHHHHHHTTTTCSEEEECSSCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHcChhhCCEEEEecCChHHHHHHHHHHHHH
Confidence            5433222 223678999999999888777777777765

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.16  E-value=0.0016  Score=64.14  Aligned_cols=95  Identities=22%  Similarity=0.311  Sum_probs=63.6

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      =+++||+|+|+|.+|..+++.|+..  ..++++|.+                   ..+.+       +..+.+.  ...-
T Consensus        14 g~~mkilvlGaG~vG~~~~~~L~~~--~~v~~~~~~-------------------~~~~~-------~~~~~~~--~~~~   63 (365)
T 3abi_A           14 GRHMKVLILGAGNIGRAIAWDLKDE--FDVYIGDVN-------------------NENLE-------KVKEFAT--PLKV   63 (365)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHTTT--SEEEEEESC-------------------HHHHH-------HHTTTSE--EEEC
T ss_pred             CCccEEEEECCCHHHHHHHHHHhcC--CCeEEEEcC-------------------HHHHH-------HHhccCC--cEEE
Confidence            3567899999999999999999753  467777632                   12222       2222222  2233


Q ss_pred             CCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEec
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g  135 (410)
                      ++.+...-.++++++|+||+|+... .-..+.+.|.+.++.+++..
T Consensus        64 d~~d~~~l~~~~~~~DvVi~~~p~~-~~~~v~~~~~~~g~~yvD~s  108 (365)
T 3abi_A           64 DASNFDKLVEVMKEFELVIGALPGF-LGFKSIKAAIKSKVDMVDVS  108 (365)
T ss_dssp             CTTCHHHHHHHHTTCSEEEECCCGG-GHHHHHHHHHHHTCEEEECC
T ss_pred             ecCCHHHHHHHHhCCCEEEEecCCc-ccchHHHHHHhcCcceEeee
Confidence            4443333456789999999998654 44578899999999999964

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.15  E-value=0.00088  Score=64.89  Aligned_cols=84  Identities=18%  Similarity=0.203  Sum_probs=59.0

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      +.+++++|+|+||+|..++..|+..|+++|+|++.+.                --..|++.+++.+.+..+ ..+.... 
T Consensus       152 l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~----------------~~~~~a~~la~~~~~~~~-~~~~~~~-  213 (315)
T 3tnl_A          152 IIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKD----------------DFYANAEKTVEKINSKTD-CKAQLFD-  213 (315)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS----------------TTHHHHHHHHHHHHHHSS-CEEEEEE-
T ss_pred             ccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCC----------------chHHHHHHHHHHhhhhcC-CceEEec-
Confidence            5678999999999999999999999999999986331                013578888888776553 4444432 


Q ss_pred             CCCCCcchHhhhccCcEEEEccC
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                       +.+...-.+.+.++|+||+|+.
T Consensus       214 -~~~~~~l~~~l~~aDiIINaTp  235 (315)
T 3tnl_A          214 -IEDHEQLRKEIAESVIFTNATG  235 (315)
T ss_dssp             -TTCHHHHHHHHHTCSEEEECSS
T ss_pred             -cchHHHHHhhhcCCCEEEECcc
Confidence             2111111244678999999874

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.07  E-value=0.0014  Score=54.22  Aligned_cols=90  Identities=18%  Similarity=0.226  Sum_probs=55.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      .++|+|+|+|.+|..+++.|...|. +++++|.+.                   .+.+.    +.+.. ++.  ....+.
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~-------------------~~~~~----~~~~~-~~~--~~~~d~   56 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDK-------------------DICKK----ASAEI-DAL--VINGDC   56 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHH----HHHHC-SSE--EEESCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH-------------------HHHHH----HHHhc-CcE--EEEcCC
Confidence            3689999999999999999999995 588888432                   12221    22111 222  222233


Q ss_pred             CCCc-chHhhhccCcEEEEccCChHHHHHHHHHHHHCC
Q 015243           92 KDPK-FNVEFFKQFNVVLNGLDNLDARRHVNRLCLAAD  128 (410)
Q Consensus        92 ~~~~-~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~  128 (410)
                      .+.. .....+.++|+|+.++.+......+...+...+
T Consensus        57 ~~~~~l~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~~~   94 (140)
T 1lss_A           57 TKIKTLEDAGIEDADMYIAVTGKEEVNLMSSLLAKSYG   94 (140)
T ss_dssp             TSHHHHHHTTTTTCSEEEECCSCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHcCcccCCEEEEeeCCchHHHHHHHHHHHcC
Confidence            2211 111225689999999988766666666666654

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=97.01  E-value=0.0013  Score=62.29  Aligned_cols=112  Identities=15%  Similarity=0.339  Sum_probs=68.0

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCcc--ccCCCCCCCCchHHHHHHHHHHhh-CCC-----
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNR--QFLFRQSHVGQSKAKVARDAVLKF-RPQ-----   81 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~R--q~lf~~~diG~~Ka~~a~~~l~~~-np~-----   81 (410)
                      |++++|+|||+|.+|...++.|...|. +++++|++.-+.  +..  +-+..  +-+. ++.  ....+++ ++.     
T Consensus        11 l~~k~VLVVGgG~va~rka~~Ll~~Ga-~VtViap~~~~~--l~~~~~~l~~--~~~~-~~~--~~~~~~~~~~~~~~~~   82 (274)
T 1kyq_A           11 LKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPDLHKS--IIPKFGKFIQ--NKDQ-PDY--REDAKRFINPNWDPTK   82 (274)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEEEECTT--HHHHHCGGGC----------------CEEECTTCCTTS
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHhCCC-EEEEEcCCCCcc--hhHHHHHHHh--cccc-ccc--cchhhccccccccccc
Confidence            678999999999999999999999995 599999765211  100  00000  0000 000  0000111 111     


Q ss_pred             CeE-EEEccCCCCCcchHhhhc------cCcEEEEccCChHHHHHHHHHHHHC---CCcEEEe
Q 015243           82 MSI-TAHHANVKDPKFNVEFFK------QFNVVLNGLDNLDARRHVNRLCLAA---DVPLVES  134 (410)
Q Consensus        82 v~i-~~~~~~i~~~~~~~~~~~------~~DvVi~a~Dn~~~r~~i~~~c~~~---~~p~i~~  134 (410)
                      -.+ +.+...+     ..+.+.      ++|+||.|+++.+....+.+.|++.   ++|+--+
T Consensus        83 g~i~~~i~~~~-----~~~dL~~l~~~~~adlViaat~d~~~n~~I~~~Ar~~f~~~i~VNvv  140 (274)
T 1kyq_A           83 NEIYEYIRSDF-----KDEYLDLENENDAWYIIMTCIPDHPESARIYHLCKERFGKQQLVNVA  140 (274)
T ss_dssp             CCCSEEECSSC-----CGGGGCCSSTTCCEEEEEECCSCHHHHHHHHHHHHHHHCTTSEEEET
T ss_pred             CCeeEEEcCCC-----CHHHHhhcccCCCeEEEEEcCCChHHHHHHHHHHHHhcCCCcEEEEC
Confidence            123 3333333     233445      8999999999988899999999998   7776444

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.93  E-value=0.0049  Score=54.02  Aligned_cols=91  Identities=18%  Similarity=0.177  Sum_probs=57.8

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHh-CCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~-Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      +.+.+|+|+|+|.+|..+++.|... |. .++++|.|.                   .|.+.    +++.  ++.+  ..
T Consensus        37 ~~~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~-------------------~~~~~----~~~~--g~~~--~~   88 (183)
T 3c85_A           37 PGHAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIRE-------------------EAAQQ----HRSE--GRNV--IS   88 (183)
T ss_dssp             CTTCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCH-------------------HHHHH----HHHT--TCCE--EE
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCH-------------------HHHHH----HHHC--CCCE--EE
Confidence            4467999999999999999999999 87 588888432                   12222    2222  2222  22


Q ss_pred             cCCCCCcchHhh--hccCcEEEEccCChHHHHHHHHHHHHCC
Q 015243           89 ANVKDPKFNVEF--FKQFNVVLNGLDNLDARRHVNRLCLAAD  128 (410)
Q Consensus        89 ~~i~~~~~~~~~--~~~~DvVi~a~Dn~~~r~~i~~~c~~~~  128 (410)
                      .+.++.......  +.++|+||.++.+.+....+-..++..+
T Consensus        89 gd~~~~~~l~~~~~~~~ad~vi~~~~~~~~~~~~~~~~~~~~  130 (183)
T 3c85_A           89 GDATDPDFWERILDTGHVKLVLLAMPHHQGNQTALEQLQRRN  130 (183)
T ss_dssp             CCTTCHHHHHTBCSCCCCCEEEECCSSHHHHHHHHHHHHHTT
T ss_pred             cCCCCHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHHHHC
Confidence            233221111222  5689999999988776666556666654

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=96.92  E-value=0.0017  Score=62.70  Aligned_cols=84  Identities=19%  Similarity=0.294  Sum_probs=58.0

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      +.+++++|+|+||.|..++..|+..|+++|+|++.+.                -...|++.+++.+....+ ..+.... 
T Consensus       146 l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~----------------~~~~~a~~la~~~~~~~~-~~v~~~~-  207 (312)
T 3t4e_A          146 MRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKD----------------DFFEKAVAFAKRVNENTD-CVVTVTD-  207 (312)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS----------------THHHHHHHHHHHHHHHSS-CEEEEEE-
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCC----------------chHHHHHHHHHHhhhccC-cceEEec-
Confidence            4678999999999999999999999999999986320                013577878877776543 3444332 


Q ss_pred             CCCCCcchHhhhccCcEEEEccC
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                       +.+.....+.+.++|+||+|+.
T Consensus       208 -~~~l~~~~~~l~~~DiIINaTp  229 (312)
T 3t4e_A          208 -LADQHAFTEALASADILTNGTK  229 (312)
T ss_dssp             -TTCHHHHHHHHHHCSEEEECSS
T ss_pred             -hHhhhhhHhhccCceEEEECCc
Confidence             1110001345678999999974

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.91  E-value=0.0038  Score=56.47  Aligned_cols=96  Identities=16%  Similarity=0.137  Sum_probs=63.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~   92 (410)
                      ++|+|+|+|.+|..+++.|...|. .++++|.|.                   .+++.+++    . .+.  ..+..+.+
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~~-------------------~~~~~l~~----~-~~~--~~i~gd~~   53 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKY-GVVIINKDR-------------------ELCEEFAK----K-LKA--TIIHGDGS   53 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTC-CEEEEESCH-------------------HHHHHHHH----H-SSS--EEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH-------------------HHHHHHHH----H-cCC--eEEEcCCC
Confidence            479999999999999999999997 588988432                   12222221    1 122  23444443


Q ss_pred             CCc-chHhhhccCcEEEEccCChHHHHHHHHHHHH-CCCcEEEec
Q 015243           93 DPK-FNVEFFKQFNVVLNGLDNLDARRHVNRLCLA-ADVPLVESG  135 (410)
Q Consensus        93 ~~~-~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~-~~~p~i~~g  135 (410)
                      +.. ....-++++|+||.++++......+...+++ ++.+.+-+.
T Consensus        54 ~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~   98 (218)
T 3l4b_C           54 HKEILRDAEVSKNDVVVILTPRDEVNLFIAQLVMKDFGVKRVVSL   98 (218)
T ss_dssp             SHHHHHHHTCCTTCEEEECCSCHHHHHHHHHHHHHTSCCCEEEEC
T ss_pred             CHHHHHhcCcccCCEEEEecCCcHHHHHHHHHHHHHcCCCeEEEE
Confidence            322 1122367899999999998887787888776 555555443

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.87  E-value=0.0033  Score=63.90  Aligned_cols=92  Identities=11%  Similarity=0.121  Sum_probs=67.2

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      |++++|+|||.|.+|...++.|...|. +++++|++.-+                     .+.+...+  .  .++.+..
T Consensus        10 l~~~~vlVvGgG~va~~k~~~L~~~ga-~V~vi~~~~~~---------------------~~~~l~~~--~--~i~~~~~   63 (457)
T 1pjq_A           10 LRDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTFIP---------------------QFTVWANE--G--MLTLVEG   63 (457)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSCCH---------------------HHHHHHTT--T--SCEEEES
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCcC-EEEEEcCCCCH---------------------HHHHHHhc--C--CEEEEEC
Confidence            678999999999999999999999995 69999964211                     01111111  2  2333333


Q ss_pred             CCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEE
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLV  132 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i  132 (410)
                      ..     ..+.+.++|+||.++|+.+....+...|++.++|+-
T Consensus        64 ~~-----~~~~l~~~~lVi~at~~~~~n~~i~~~a~~~~i~vn  101 (457)
T 1pjq_A           64 PF-----DETLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCN  101 (457)
T ss_dssp             SC-----CGGGGTTCSEEEECCSCHHHHHHHHHHHHHTTCEEE
T ss_pred             CC-----CccccCCccEEEEcCCCHHHHHHHHHHHHHcCCEEE
Confidence            33     234567899999999998888889999999999853

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.84  E-value=0.0043  Score=56.43  Aligned_cols=103  Identities=17%  Similarity=0.154  Sum_probs=60.4

Q ss_pred             HHHHHHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCe
Q 015243            5 RQLEAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMS   83 (410)
Q Consensus         5 e~q~~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~   83 (410)
                      ..+..|++++|+|.|+ |++|.++++.|+..|. ++++++.+.                   .+.+.+    ..  +  .
T Consensus        14 ~~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~-------------------~~~~~~----~~--~--~   65 (236)
T 3e8x_A           14 RENLYFQGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNE-------------------EQGPEL----RE--R--G   65 (236)
T ss_dssp             -------CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSG-------------------GGHHHH----HH--T--T
T ss_pred             ccccCcCCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECCh-------------------HHHHHH----Hh--C--C
Confidence            3456899999999996 9999999999999996 577776431                   111111    11  1  2


Q ss_pred             E-EEEccCCCCCcchHhhhccCcEEEEccC-------------ChHHHHHHHHHHHHCCC-cEEEeccc
Q 015243           84 I-TAHHANVKDPKFNVEFFKQFNVVLNGLD-------------NLDARRHVNRLCLAADV-PLVESGTT  137 (410)
Q Consensus        84 i-~~~~~~i~~~~~~~~~~~~~DvVi~a~D-------------n~~~r~~i~~~c~~~~~-p~i~~g~~  137 (410)
                      + +.+..+++ . ...+.+.+.|+||++..             |...-..+-+.|.+.+. .+|..++.
T Consensus        66 ~~~~~~~Dl~-~-~~~~~~~~~D~vi~~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~  132 (236)
T 3e8x_A           66 ASDIVVANLE-E-DFSHAFASIDAVVFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSV  132 (236)
T ss_dssp             CSEEEECCTT-S-CCGGGGTTCSEEEECCCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCT
T ss_pred             CceEEEcccH-H-HHHHHHcCCCEEEECCCCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecC
Confidence            3 44555555 2 22356789999999753             22333455566666554 45665543

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=96.69  E-value=0.0033  Score=59.48  Aligned_cols=73  Identities=22%  Similarity=0.393  Sum_probs=52.1

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      +.+++++|+|+||+|..++..|+..|++++++++.+                   ..|++.+++.+..  .  .+.... 
T Consensus       118 l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~-------------------~~~a~~la~~~~~--~--~~~~~~-  173 (272)
T 3pwz_A          118 LRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRD-------------------MAKALALRNELDH--S--RLRISR-  173 (272)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSC-------------------HHHHHHHHHHHCC--T--TEEEEC-
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhcc--C--CeeEee-
Confidence            467899999999999999999999999999997522                   2477777766654  1  233321 


Q ss_pred             CCCCCcchHhhhccCcEEEEccC
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                       +.+  .. .  .++|+||+|+.
T Consensus       174 -~~~--l~-~--~~~DivInaTp  190 (272)
T 3pwz_A          174 -YEA--LE-G--QSFDIVVNATS  190 (272)
T ss_dssp             -SGG--GT-T--CCCSEEEECSS
T ss_pred             -HHH--hc-c--cCCCEEEECCC
Confidence             111  11 1  68999999985

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=96.66  E-value=0.0044  Score=58.95  Aligned_cols=74  Identities=24%  Similarity=0.424  Sum_probs=54.0

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      +.+++++|+|+||+|..++..|+..|+.++++++.+                   ..|++.+++.+.... .+.+.... 
T Consensus       124 l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~-------------------~~~a~~la~~~~~~~-~~~~~~~~-  182 (281)
T 3o8q_A          124 LKGATILLIGAGGAARGVLKPLLDQQPASITVTNRT-------------------FAKAEQLAELVAAYG-EVKAQAFE-  182 (281)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESS-------------------HHHHHHHHHHHGGGS-CEEEEEGG-
T ss_pred             ccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECC-------------------HHHHHHHHHHhhccC-CeeEeeHH-
Confidence            467899999999999999999999999999998632                   246777777766542 22322211 


Q ss_pred             CCCCCcchHhhhccCcEEEEccCC
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLDN  113 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~Dn  113 (410)
                               +...++|+||+|+..
T Consensus       183 ---------~l~~~aDiIInaTp~  197 (281)
T 3o8q_A          183 ---------QLKQSYDVIINSTSA  197 (281)
T ss_dssp             ---------GCCSCEEEEEECSCC
T ss_pred             ---------HhcCCCCEEEEcCcC
Confidence                     112689999999854

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.58  E-value=0.013  Score=52.54  Aligned_cols=97  Identities=16%  Similarity=0.244  Sum_probs=64.3

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      ++|+|.| .|.+|..+++.|...| -++++++.+.-....+                          .  -.++.+..++
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~--------------------------~--~~~~~~~~Dl   55 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRG-FEVTAVVRHPEKIKIE--------------------------N--EHLKVKKADV   55 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTT-CEEEEECSCGGGCCCC--------------------------C--TTEEEECCCT
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCC-CEEEEEEcCcccchhc--------------------------c--CceEEEEecC
Confidence            6899999 5999999999999999 4688887553221111                          1  1355566666


Q ss_pred             CCCcchHhhhccCcEEEEccC-----------ChHHHHHHHHHHHHCCC-cEEEecccC
Q 015243           92 KDPKFNVEFFKQFNVVLNGLD-----------NLDARRHVNRLCLAADV-PLVESGTTG  138 (410)
Q Consensus        92 ~~~~~~~~~~~~~DvVi~a~D-----------n~~~r~~i~~~c~~~~~-p~i~~g~~G  138 (410)
                      ++...-...++++|+||.+..           |...-..+-+.|.+.++ .+|..++.+
T Consensus        56 ~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~  114 (227)
T 3dhn_A           56 SSLDEVCEVCKGADAVISAFNPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAG  114 (227)
T ss_dssp             TCHHHHHHHHTTCSEEEECCCC------CCSHHHHHHHHHHHHHHHTTCSEEEEECCST
T ss_pred             CCHHHHHHHhcCCCEEEEeCcCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChh
Confidence            544334456778888888653           23344556667777775 577766654

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.58  E-value=0.011  Score=51.83  Aligned_cols=100  Identities=15%  Similarity=0.121  Sum_probs=60.2

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        12 ~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      +++|+|.|+ |++|.++++.|+..| .++++++.+.-....+                         ..+  +++....+
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g-~~V~~~~r~~~~~~~~-------------------------~~~--~~~~~~~D   54 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAG-YEVTVLVRDSSRLPSE-------------------------GPR--PAHVVVGD   54 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCGGGSCSS-------------------------SCC--CSEEEESC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCC-CeEEEEEeChhhcccc-------------------------cCC--ceEEEEec
Confidence            468999997 999999999999999 4688887543211100                         012  23344455


Q ss_pred             CCCCcchHhhhccCcEEEEccCC----------hHHHHHHHHHHHHCCC-cEEEecccCc
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLDN----------LDARRHVNRLCLAADV-PLVESGTTGF  139 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~Dn----------~~~r~~i~~~c~~~~~-p~i~~g~~G~  139 (410)
                      +++...-...++++|+||.+...          ...-..+-+.|.+.+. .++..++.+.
T Consensus        55 ~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~~  114 (206)
T 1hdo_A           55 VLQAADVDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFL  114 (206)
T ss_dssp             TTSHHHHHHHHTTCSEEEECCCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCGGG
T ss_pred             CCCHHHHHHHHcCCCEEEECccCCCCCCccchHHHHHHHHHHHHHHhCCCeEEEEeeeee
Confidence            54433334556778888886532          2233445556666554 4666655543

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.55  E-value=0.0079  Score=57.82  Aligned_cols=41  Identities=20%  Similarity=0.347  Sum_probs=26.8

Q ss_pred             HHHHHHHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            4 ERQLEAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         4 ~e~q~~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +..++.+..++|+|.|+ |.||..+++.|+..|. +++++|..
T Consensus        11 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~   52 (347)
T 4id9_A           11 SSGLVPRGSHMILVTGSAGRVGRAVVAALRTQGR-TVRGFDLR   52 (347)
T ss_dssp             ----------CEEEETTTSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CCcccccCCCEEEEECCCChHHHHHHHHHHhCCC-EEEEEeCC
Confidence            44567889999999996 9999999999999996 47777643

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.54  E-value=0.013  Score=49.20  Aligned_cols=87  Identities=15%  Similarity=0.177  Sum_probs=56.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      +.+|+|+|+|.+|..+++.|...|. .++++|.|.                   .+.+    .+++  .++.  ....+.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~-------------------~~~~----~~~~--~g~~--~i~gd~   58 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSR-------------------TRVD----ELRE--RGVR--AVLGNA   58 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCH-------------------HHHH----HHHH--TTCE--EEESCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCH-------------------HHHH----HHHH--cCCC--EEECCC
Confidence            4689999999999999999999997 599988542                   1222    2222  1333  344444


Q ss_pred             CCCcch-HhhhccCcEEEEccCChHHHHHHHHHHHH
Q 015243           92 KDPKFN-VEFFKQFNVVLNGLDNLDARRHVNRLCLA  126 (410)
Q Consensus        92 ~~~~~~-~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~  126 (410)
                      ++...- ..-+.++|+||.++++...-..+-..+++
T Consensus        59 ~~~~~l~~a~i~~ad~vi~~~~~~~~n~~~~~~a~~   94 (140)
T 3fwz_A           59 ANEEIMQLAHLECAKWLILTIPNGYEAGEIVASARA   94 (140)
T ss_dssp             TSHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHH
T ss_pred             CCHHHHHhcCcccCCEEEEECCChHHHHHHHHHHHH
Confidence            332111 11256899999999887655545555554

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.52  E-value=0.0097  Score=55.66  Aligned_cols=99  Identities=17%  Similarity=0.264  Sum_probs=62.6

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      +.++|+|.|+|.+|+.+++.|...|. +++.++.+.-   +                          ..+.+  +.+..+
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~~---~--------------------------~~~~~--~~~~~D   49 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGH-EVTGLRRSAQ---P--------------------------MPAGV--QTLIAD   49 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTC-CEEEEECTTS---C--------------------------CCTTC--CEEECC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcc---c--------------------------cccCC--ceEEcc
Confidence            45799999999999999999999997 4777664311   0                          01223  334445


Q ss_pred             CCCCcchHhhhcc-CcEEEEccC------------ChHHHHHHHHHHHHCCC-cEEEecccCccc
Q 015243           91 VKDPKFNVEFFKQ-FNVVLNGLD------------NLDARRHVNRLCLAADV-PLVESGTTGFLG  141 (410)
Q Consensus        91 i~~~~~~~~~~~~-~DvVi~a~D------------n~~~r~~i~~~c~~~~~-p~i~~g~~G~~G  141 (410)
                      +.+...-...+++ +|+||.+..            |...-..+-+.|.+.++ .+|..++.+.+|
T Consensus        50 l~d~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~vyg  114 (286)
T 3gpi_A           50 VTRPDTLASIVHLRPEILVYCVAASEYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVYG  114 (286)
T ss_dssp             TTCGGGCTTGGGGCCSEEEECHHHHHHC-----CCSHHHHHHHHHHTTTSCCCEEEEEEEGGGCC
T ss_pred             CCChHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcccEEEc
Confidence            5443323345555 999998642            33344556666766664 577776665554

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=96.51  E-value=0.005  Score=62.58  Aligned_cols=98  Identities=10%  Similarity=0.175  Sum_probs=66.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhC-C--CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSG-F--QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~G-v--~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      +.||+|+|+|++|+.++..|++.+ +  ..|+++|.+...                +..    .+.+     .+++.  .
T Consensus        13 ~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~----------------~~~----~~~~-----g~~~~--~   65 (480)
T 2ph5_A           13 KNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTK----------------VDV----AQQY-----GVSFK--L   65 (480)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCS----------------CCH----HHHH-----TCEEE--E
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhh----------------hhH----Hhhc-----CCcee--E
Confidence            578999999999999999999864 5  589999855432                111    1111     23333  3


Q ss_pred             cCCCCCcc---hHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEeccc
Q 015243           89 ANVKDPKF---NVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT  137 (410)
Q Consensus        89 ~~i~~~~~---~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~  137 (410)
                      ..++..+.   ...++++.|+||++..... -..+-+.|.+.++-+++....
T Consensus        66 ~~Vdadnv~~~l~aLl~~~DvVIN~s~~~~-~l~Im~acleaGv~YlDTa~E  116 (480)
T 2ph5_A           66 QQITPQNYLEVIGSTLEENDFLIDVSIGIS-SLALIILCNQKGALYINAATE  116 (480)
T ss_dssp             CCCCTTTHHHHTGGGCCTTCEEEECCSSSC-HHHHHHHHHHHTCEEEESSCC
T ss_pred             EeccchhHHHHHHHHhcCCCEEEECCcccc-CHHHHHHHHHcCCCEEECCCC
Confidence            34433322   1235666799999875543 356778999999999998764

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=96.49  E-value=0.021  Score=54.08  Aligned_cols=87  Identities=14%  Similarity=0.212  Sum_probs=65.7

Q ss_pred             HHHHHhCCcEEEEC-CcHHHHHHHHHHHHhCCC--cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCC
Q 015243            6 QLEAIKGAKVLMVG-AGGIGCELLKTLALSGFQ--DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM   82 (410)
Q Consensus         6 ~q~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~--~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v   82 (410)
                      ....|.+++++|.| .||||.++++.|+..|.+  ++.++|.+                   ..+.+.+++.+.+..|..
T Consensus        27 ~~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~-------------------~~~~~~~~~~l~~~~~~~   87 (287)
T 3rku_A           27 AAERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARR-------------------LEKLEELKKTIDQEFPNA   87 (287)
T ss_dssp             HHHHHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESC-------------------HHHHHHHHHHHHHHCTTC
T ss_pred             chhhcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECC-------------------HHHHHHHHHHHHhhCCCC
Confidence            35678999999998 689999999999999985  77777632                   245666777788877888


Q ss_pred             eEEEEccCCCCCcchHhhh-------ccCcEEEEcc
Q 015243           83 SITAHHANVKDPKFNVEFF-------KQFNVVLNGL  111 (410)
Q Consensus        83 ~i~~~~~~i~~~~~~~~~~-------~~~DvVi~a~  111 (410)
                      ++..+..++++...-..++       .+.|++|++.
T Consensus        88 ~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnA  123 (287)
T 3rku_A           88 KVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNA  123 (287)
T ss_dssp             EEEEEECCTTCGGGHHHHHHTSCGGGCSCCEEEECC
T ss_pred             eEEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            8888888886654333333       3679999853

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=96.48  E-value=0.0037  Score=52.75  Aligned_cols=75  Identities=12%  Similarity=0.228  Sum_probs=51.5

Q ss_pred             HHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         8 ~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .+...++|+|+|+|++|..+++.|...|+. ++++|.+                   ..|++.+++.+   .  ..+...
T Consensus        17 ~~~~~~~v~iiG~G~iG~~~a~~l~~~g~~-v~v~~r~-------------------~~~~~~~a~~~---~--~~~~~~   71 (144)
T 3oj0_A           17 RKNGGNKILLVGNGMLASEIAPYFSYPQYK-VTVAGRN-------------------IDHVRAFAEKY---E--YEYVLI   71 (144)
T ss_dssp             HHHCCCEEEEECCSHHHHHHGGGCCTTTCE-EEEEESC-------------------HHHHHHHHHHH---T--CEEEEC
T ss_pred             HhccCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCC-------------------HHHHHHHHHHh---C--CceEee
Confidence            344589999999999999999999999988 9998743                   12444444333   2  222211


Q ss_pred             ccCCCCCcchHhhhccCcEEEEccCCh
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGLDNL  114 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn~  114 (410)
                          .   ...+.+.++|+||+|+...
T Consensus        72 ----~---~~~~~~~~~Divi~at~~~   91 (144)
T 3oj0_A           72 ----N---DIDSLIKNNDVIITATSSK   91 (144)
T ss_dssp             ----S---CHHHHHHTCSEEEECSCCS
T ss_pred             ----c---CHHHHhcCCCEEEEeCCCC
Confidence                1   1235678999999998754

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.43  E-value=0.021  Score=54.89  Aligned_cols=114  Identities=18%  Similarity=0.138  Sum_probs=70.2

Q ss_pred             HHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC---Ce
Q 015243            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ---MS   83 (410)
Q Consensus         8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~---v~   83 (410)
                      ..++.++|+|.| .|.||..+++.|...|. +++.+|...-.               ...    ..+.+....+.   -.
T Consensus        21 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~---------------~~~----~~~~~~~~~~~~~~~~   80 (351)
T 3ruf_A           21 LIFSPKTWLITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTG---------------HQY----NLDEVKTLVSTEQWSR   80 (351)
T ss_dssp             HHHSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSC---------------CHH----HHHHHHHTSCHHHHTT
T ss_pred             CCCCCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCCC---------------chh----hhhhhhhccccccCCc
Confidence            456789999999 59999999999999995 57776632210               001    11222222110   24


Q ss_pred             EEEEccCCCCCcchHhhhccCcEEEEccCC-----------------hHHHHHHHHHHHHCCC-cEEEecccCccc
Q 015243           84 ITAHHANVKDPKFNVEFFKQFNVVLNGLDN-----------------LDARRHVNRLCLAADV-PLVESGTTGFLG  141 (410)
Q Consensus        84 i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn-----------------~~~r~~i~~~c~~~~~-p~i~~g~~G~~G  141 (410)
                      ++.+..++.+...-...++++|+||.+...                 ...-..+-+.|.+.++ .+|..++.+.+|
T Consensus        81 ~~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vyg  156 (351)
T 3ruf_A           81 FCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYG  156 (351)
T ss_dssp             EEEEECCTTCHHHHHHHTTTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGT
T ss_pred             eEEEEccCCCHHHHHHHhcCCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecHHhcC
Confidence            566667776544445667899999997532                 1112335667777775 677777665554

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=96.41  E-value=0.0032  Score=60.27  Aligned_cols=76  Identities=16%  Similarity=0.249  Sum_probs=51.6

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      +..++|+|+|+|++|..++..|+..|+.+++++|.+.                   .|++.+++.+....+  .+..   
T Consensus       139 l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~-------------------~ka~~la~~~~~~~~--~~~~---  194 (297)
T 2egg_A          139 LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV-------------------EKAERLVREGDERRS--AYFS---  194 (297)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH-------------------HHHHHHHHHSCSSSC--CEEC---
T ss_pred             CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH-------------------HHHHHHHHHhhhccC--ceee---
Confidence            4678999999999999999999999999999986332                   455555544322111  1110   


Q ss_pred             CCCCCcchHhhhccCcEEEEccCC
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLDN  113 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~Dn  113 (410)
                       +   ....+.+.++|+||+|+..
T Consensus       195 -~---~~~~~~~~~aDivIn~t~~  214 (297)
T 2egg_A          195 -L---AEAETRLAEYDIIINTTSV  214 (297)
T ss_dssp             -H---HHHHHTGGGCSEEEECSCT
T ss_pred             -H---HHHHhhhccCCEEEECCCC
Confidence             0   0112456789999999854

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.38  E-value=0.02  Score=51.27  Aligned_cols=95  Identities=21%  Similarity=0.299  Sum_probs=63.1

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      ++|+|.| .|++|.++++.|+..|. ++++++.+.-....+                           +  .++.+..++
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~---------------------------~--~~~~~~~D~   50 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDY-QIYAGARKVEQVPQY---------------------------N--NVKAVHFDV   50 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSC-EEEEEESSGGGSCCC---------------------------T--TEEEEECCT
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCccchhhc---------------------------C--CceEEEecc
Confidence            3799998 79999999999999994 588877543111000                           2  355566666


Q ss_pred             CC-CcchHhhhccCcEEEEccC---------ChHHHHHHHHHHHHCCC-cEEEeccc
Q 015243           92 KD-PKFNVEFFKQFNVVLNGLD---------NLDARRHVNRLCLAADV-PLVESGTT  137 (410)
Q Consensus        92 ~~-~~~~~~~~~~~DvVi~a~D---------n~~~r~~i~~~c~~~~~-p~i~~g~~  137 (410)
                      ++ ...-...++++|+||.+..         |...-..+-+.|.+.++ .+|..++.
T Consensus        51 ~d~~~~~~~~~~~~d~vi~~ag~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~  107 (219)
T 3dqp_A           51 DWTPEEMAKQLHGMDAIINVSGSGGKSLLKVDLYGAVKLMQAAEKAEVKRFILLSTI  107 (219)
T ss_dssp             TSCHHHHHTTTTTCSEEEECCCCTTSSCCCCCCHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             cCCHHHHHHHHcCCCEEEECCcCCCCCcEeEeHHHHHHHHHHHHHhCCCEEEEECcc
Confidence            55 3334456788999999754         34445566777777775 46665554

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=96.30  E-value=0.0087  Score=58.17  Aligned_cols=111  Identities=21%  Similarity=0.278  Sum_probs=66.9

Q ss_pred             HHHHHHhCCcEEEEC-CcHHHHHHHHHHHHh-CCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCC
Q 015243            5 RQLEAIKGAKVLMVG-AGGIGCELLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM   82 (410)
Q Consensus         5 e~q~~L~~~~VlvvG-~GgiG~ev~knLa~~-Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v   82 (410)
                      .+...++.++|+|.| .|.||+.+++.|... |. +++.+|...-....+                          ...-
T Consensus        17 ~~~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~~--------------------------~~~~   69 (372)
T 3slg_A           17 QGPGSMKAKKVLILGVNGFIGHHLSKRILETTDW-EVFGMDMQTDRLGDL--------------------------VKHE   69 (372)
T ss_dssp             ------CCCEEEEESCSSHHHHHHHHHHHHHSSC-EEEEEESCCTTTGGG--------------------------GGST
T ss_pred             cCCcccCCCEEEEECCCChHHHHHHHHHHhCCCC-EEEEEeCChhhhhhh--------------------------ccCC
Confidence            455678889999999 699999999999998 64 588877532111100                          0012


Q ss_pred             eEEEEccCCC-CCcchHhhhccCcEEEEccCC--h---------------HHHHHHHHHHHHCCCcEEEecccCccce
Q 015243           83 SITAHHANVK-DPKFNVEFFKQFNVVLNGLDN--L---------------DARRHVNRLCLAADVPLVESGTTGFLGQ  142 (410)
Q Consensus        83 ~i~~~~~~i~-~~~~~~~~~~~~DvVi~a~Dn--~---------------~~r~~i~~~c~~~~~p~i~~g~~G~~G~  142 (410)
                      .++.+..+++ +.......++++|+||.+...  .               ..-..+-+.|.+.+..+|..++.+.+|.
T Consensus        70 ~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~v~~SS~~vyg~  147 (372)
T 3slg_A           70 RMHFFEGDITINKEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYGM  147 (372)
T ss_dssp             TEEEEECCTTTCHHHHHHHHHHCSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHTCEEEEECCGGGGBS
T ss_pred             CeEEEeCccCCCHHHHHHHhccCCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCcHHHhCC
Confidence            4556666776 433334567789999985321  1               1113455667666678888877665553

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=96.28  E-value=0.014  Score=55.26  Aligned_cols=81  Identities=12%  Similarity=0.203  Sum_probs=53.4

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCC--CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGF--QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv--~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      +..+|.|||+|.+|+.+++.|+..|.  .+++++|.+.                   .|.+.+++.   +  .+.+  . 
T Consensus         2 ~~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~-------------------~~~~~l~~~---~--gi~~--~-   54 (280)
T 3tri_A            2 NTSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL-------------------DKLDFFKEK---C--GVHT--T-   54 (280)
T ss_dssp             CCSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS-------------------HHHHHHHHT---T--CCEE--E-
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH-------------------HHHHHHHHH---c--CCEE--e-
Confidence            45789999999999999999999996  2688876322                   233322221   1  2221  1 


Q ss_pred             cCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHH
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC  124 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c  124 (410)
                            ....+.++++|+||.|+.....+..+.++.
T Consensus        55 ------~~~~~~~~~aDvVilav~p~~~~~vl~~l~   84 (280)
T 3tri_A           55 ------QDNRQGALNADVVVLAVKPHQIKMVCEELK   84 (280)
T ss_dssp             ------SCHHHHHSSCSEEEECSCGGGHHHHHHHHH
T ss_pred             ------CChHHHHhcCCeEEEEeCHHHHHHHHHHHH
Confidence                  113456789999999996555555555554

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=96.27  E-value=0.021  Score=55.03  Aligned_cols=116  Identities=16%  Similarity=0.083  Sum_probs=68.5

Q ss_pred             HHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .+..++|+|.|+ |.||..+++.|+..|. +++++|...-               -...+.+.+.+.+.... .-+++.+
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~---------------~~~~~~~~~~~~~~~~~-~~~~~~~   86 (352)
T 1sb8_A           24 PAQPKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDNFAT---------------GHQRNLDEVRSLVSEKQ-WSNFKFI   86 (352)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSS---------------CCHHHHHHHHHHSCHHH-HTTEEEE
T ss_pred             CccCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCc---------------cchhhHHHHhhhccccc-CCceEEE
Confidence            367789999996 9999999999999985 5777763211               00112222222211110 1245566


Q ss_pred             ccCCCCCcchHhhhccCcEEEEccCCh-----------------HHHHHHHHHHHHCCC-cEEEecccCccc
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGLDNL-----------------DARRHVNRLCLAADV-PLVESGTTGFLG  141 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn~-----------------~~r~~i~~~c~~~~~-p~i~~g~~G~~G  141 (410)
                      ..++++...-...++++|+||.+....                 ..-..+-+.|.+.++ .+|..++.+.+|
T Consensus        87 ~~Dl~d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~  158 (352)
T 1sb8_A           87 QGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYG  158 (352)
T ss_dssp             ECCTTSHHHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGT
T ss_pred             ECCCCCHHHHHHHhcCCCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhcC
Confidence            667755433345678999999965321                 112345566777775 477766655444

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=96.23  E-value=0.013  Score=52.92  Aligned_cols=37  Identities=14%  Similarity=0.398  Sum_probs=28.7

Q ss_pred             HHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         8 ~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      -++...+|.|+|+|.+|+.+++.|+..|. +++++|.+
T Consensus        15 ~~~~~~~I~iiG~G~mG~~la~~l~~~g~-~V~~~~~~   51 (209)
T 2raf_A           15 LYFQGMEITIFGKGNMGQAIGHNFEIAGH-EVTYYGSK   51 (209)
T ss_dssp             -----CEEEEECCSHHHHHHHHHHHHTTC-EEEEECTT
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            35788899999999999999999999996 58887743

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.23  E-value=0.031  Score=53.83  Aligned_cols=103  Identities=16%  Similarity=0.141  Sum_probs=64.8

Q ss_pred             HhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      +..++|+|.|+ |.+|..+++.|...| .++++++.+.               .-...|...+. .+..  +  .++.+.
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~---------------~~~~~~~~~~~-~l~~--~--~v~~~~   66 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAH-RPTYILARPG---------------PRSPSKAKIFK-ALED--K--GAIIVY   66 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTT-CCEEEEECSS---------------CCCHHHHHHHH-HHHH--T--TCEEEE
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCC-CCEEEEECCC---------------CCChhHHHHHH-HHHh--C--CcEEEE
Confidence            45679999997 999999999999999 4577766332               11112333221 2222  2  344556


Q ss_pred             cCCCCCcchHhhhc--cCcEEEEccC--ChHHHHHHHHHHHHCC-CcEEE
Q 015243           89 ANVKDPKFNVEFFK--QFNVVLNGLD--NLDARRHVNRLCLAAD-VPLVE  133 (410)
Q Consensus        89 ~~i~~~~~~~~~~~--~~DvVi~a~D--n~~~r~~i~~~c~~~~-~p~i~  133 (410)
                      .++++...-...++  ++|+||.+..  |......+-+.|.+.+ ++.+-
T Consensus        67 ~Dl~d~~~l~~~~~~~~~d~Vi~~a~~~n~~~~~~l~~aa~~~g~v~~~v  116 (346)
T 3i6i_A           67 GLINEQEAMEKILKEHEIDIVVSTVGGESILDQIALVKAMKAVGTIKRFL  116 (346)
T ss_dssp             CCTTCHHHHHHHHHHTTCCEEEECCCGGGGGGHHHHHHHHHHHCCCSEEE
T ss_pred             eecCCHHHHHHHHhhCCCCEEEECCchhhHHHHHHHHHHHHHcCCceEEe
Confidence            67755443455677  9999999754  5556667777888777 65543

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=96.22  E-value=0.012  Score=56.44  Aligned_cols=112  Identities=17%  Similarity=0.157  Sum_probs=64.9

Q ss_pred             HHhCCcEEEECC-cHHHHHHHHHHHHhCCC-cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEE
Q 015243            9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (410)
Q Consensus         9 ~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~-~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~   86 (410)
                      .+..++|+|.|+ |.||..+++.|...|.. ++..+|....... .                    +.+......-+++.
T Consensus        21 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~-~--------------------~~l~~~~~~~~~~~   79 (346)
T 4egb_A           21 QSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGN-L--------------------NNVKSIQDHPNYYF   79 (346)
T ss_dssp             ---CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCC-G--------------------GGGTTTTTCTTEEE
T ss_pred             ccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccc-h--------------------hhhhhhccCCCeEE
Confidence            356679999996 99999999999999943 3555553321100 0                    01111222224555


Q ss_pred             EccCCCCCcchHhhhcc--CcEEEEccCC-----------------hHHHHHHHHHHHHCCCc-EEEecccCccc
Q 015243           87 HHANVKDPKFNVEFFKQ--FNVVLNGLDN-----------------LDARRHVNRLCLAADVP-LVESGTTGFLG  141 (410)
Q Consensus        87 ~~~~i~~~~~~~~~~~~--~DvVi~a~Dn-----------------~~~r~~i~~~c~~~~~p-~i~~g~~G~~G  141 (410)
                      +..++++...-...+++  +|+||.+...                 ...-..+-+.|.+.+++ +|..++.+.+|
T Consensus        80 ~~~Dl~d~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vy~  154 (346)
T 4egb_A           80 VKGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYG  154 (346)
T ss_dssp             EECCTTCHHHHHHHHHHHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEEGGGGC
T ss_pred             EEcCCCCHHHHHHHHhhcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCchHHhC
Confidence            66666554333455555  8888875421                 11224556677787776 77777665554

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.21  E-value=0.0096  Score=56.30  Aligned_cols=32  Identities=25%  Similarity=0.561  Sum_probs=28.8

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ++|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~   36 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDIN   36 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            689999999999999999999997 68888744

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.13  E-value=0.024  Score=54.26  Aligned_cols=37  Identities=24%  Similarity=0.424  Sum_probs=31.3

Q ss_pred             HHHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            8 EAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         8 ~~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +.+.+++|+|.|+ |+||..+++.|+..|. +++++|.+
T Consensus        16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g~-~V~~~~r~   53 (330)
T 2pzm_A           16 PRGSHMRILITGGAGCLGSNLIEHWLPQGH-EILVIDNF   53 (330)
T ss_dssp             STTTCCEEEEETTTSHHHHHHHHHHGGGTC-EEEEEECC
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            4577889999996 9999999999999994 68887753

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.11  E-value=0.017  Score=55.95  Aligned_cols=76  Identities=16%  Similarity=0.222  Sum_probs=51.9

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC----CCCeEE
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR----PQMSIT   85 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~n----p~v~i~   85 (410)
                      ++..||.|+|+|.+|+.++..|+..|.++++|+|-+.                   .|++..+..+.+.+    ...++.
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~-------------------~~~~g~~~dl~~~~~~~~~~~~v~   65 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE-------------------GTPQGKGLDIAESSPVDGFDAKFT   65 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS-------------------SHHHHHHHHHHHHHHHHTCCCCEE
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc-------------------hhHHHHHHHHhchhhhcCCCCEEE
Confidence            5678999999999999999999999987899988432                   23333333444432    244555


Q ss_pred             EEccCCCCCcchHhhhccCcEEEEccC
Q 015243           86 AHHANVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        86 ~~~~~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                      +..+        .+-++++|+||.+..
T Consensus        66 ~t~d--------~~a~~~aDiVIiaag   84 (324)
T 3gvi_A           66 GAND--------YAAIEGADVVIVTAG   84 (324)
T ss_dssp             EESS--------GGGGTTCSEEEECCS
T ss_pred             EeCC--------HHHHCCCCEEEEccC
Confidence            4321        144789999999854

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=96.08  E-value=0.05  Score=49.17  Aligned_cols=77  Identities=16%  Similarity=0.296  Sum_probs=50.7

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCC-cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~-~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~   86 (410)
                      .+.+++|+|.| .|+||.++++.|+..|.. ++.++|.+.-.   +.           ..+           .+  .+..
T Consensus        15 ~m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~---~~-----------~~~-----------~~--~~~~   67 (242)
T 2bka_A           15 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLT---FD-----------EEA-----------YK--NVNQ   67 (242)
T ss_dssp             HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCC---CC-----------SGG-----------GG--GCEE
T ss_pred             hhcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCC---cc-----------ccc-----------cC--CceE
Confidence            36678999998 699999999999999973 78888754211   10           000           01  2344


Q ss_pred             EccCCCCCcchHhhhccCcEEEEccC
Q 015243           87 HHANVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                      +..++++...-...+++.|+||++..
T Consensus        68 ~~~D~~d~~~~~~~~~~~d~vi~~ag   93 (242)
T 2bka_A           68 EVVDFEKLDDYASAFQGHDVGFCCLG   93 (242)
T ss_dssp             EECCGGGGGGGGGGGSSCSEEEECCC
T ss_pred             EecCcCCHHHHHHHhcCCCEEEECCC
Confidence            45556443333456778999999754

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.08  E-value=0.03  Score=52.93  Aligned_cols=98  Identities=12%  Similarity=0.165  Sum_probs=62.0

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      .++|+|.| .|.+|+.+++.|...|. +++.++.+.   ...                .     +.      .++....+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~---~~~----------------~-----~~------~~~~~~~D   50 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGN-TPIILTRSI---GNK----------------A-----IN------DYEYRVSD   50 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCC---C--------------------------------CCEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCCC---Ccc----------------c-----CC------ceEEEEcc
Confidence            47899999 69999999999999996 577776541   000                0     00      23344445


Q ss_pred             CCCCcchHhhhccCcEEEEccC-------------ChHHHHHHHHHHHHCCCc-EEEecccCccc
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLD-------------NLDARRHVNRLCLAADVP-LVESGTTGFLG  141 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~D-------------n~~~r~~i~~~c~~~~~p-~i~~g~~G~~G  141 (410)
                      ++ ...-.+.++++|+||.+..             |...-..+-+.|.+.+++ +|..++.+.+|
T Consensus        51 l~-~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~vyg  114 (311)
T 3m2p_A           51 YT-LEDLINQLNDVDAVVHLAATRGSQGKISEFHDNEILTQNLYDACYENNISNIVYASTISAYS  114 (311)
T ss_dssp             CC-HHHHHHHTTTCSEEEECCCCCCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCC
T ss_pred             cc-HHHHHHhhcCCCEEEEccccCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhC
Confidence            54 3333455678888887542             122335566778888876 77777665544

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.06  E-value=0.064  Score=50.90  Aligned_cols=109  Identities=17%  Similarity=0.097  Sum_probs=65.6

Q ss_pred             HhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE-
Q 015243           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH-   87 (410)
Q Consensus        10 L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~-   87 (410)
                      +.+++|+|.|+ |+||+.+++.|+..|. +++++|.+.                   .+.+.+.+.+....+ -+++.+ 
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~-~~~~~~~   67 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSA-------------------SKLANLQKRWDAKYP-GRFETAV   67 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSH-------------------HHHHHHHHHHHHHST-TTEEEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCc-------------------ccHHHHHHHhhccCC-CceEEEE
Confidence            45789999996 9999999999999985 577665321                   233333444433332 245555 


Q ss_pred             ccCCCCCcchHhhhccCcEEEEccC------Ch--------HHHHHHHHHHHH-CC-CcEEEecccCc
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGLD------NL--------DARRHVNRLCLA-AD-VPLVESGTTGF  139 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~D------n~--------~~r~~i~~~c~~-~~-~p~i~~g~~G~  139 (410)
                      ..++++...-...++++|+||.+..      +.        ..-..+-+.|.. .+ ..+|..++.+.
T Consensus        68 ~~D~~d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~  135 (342)
T 1y1p_A           68 VEDMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVS  135 (342)
T ss_dssp             CSCTTSTTTTTTTTTTCSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGG
T ss_pred             ecCCcChHHHHHHHcCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHH
Confidence            5666544333456778999999642      11        222344555653 33 45676665543

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=96.04  E-value=0.045  Score=52.94  Aligned_cols=105  Identities=12%  Similarity=0.173  Sum_probs=68.5

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHh-CCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~-Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~   86 (410)
                      .+++++|+|.| .|++|+++++.|+.. |..+++++|.+.                   .|...+++.+.    ...+..
T Consensus        18 ~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~-------------------~~~~~~~~~~~----~~~v~~   74 (344)
T 2gn4_A           18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDE-------------------LKQSEMAMEFN----DPRMRF   74 (344)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCH-------------------HHHHHHHHHHC----CTTEEE
T ss_pred             hhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECCh-------------------hhHHHHHHHhc----CCCEEE
Confidence            36678999998 599999999999999 987888887432                   23333333332    235666


Q ss_pred             EccCCCCCcchHhhhccCcEEEEccCCh-----------------HHHHHHHHHHHHCCC-cEEEecc
Q 015243           87 HHANVKDPKFNVEFFKQFNVVLNGLDNL-----------------DARRHVNRLCLAADV-PLVESGT  136 (410)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~DvVi~a~Dn~-----------------~~r~~i~~~c~~~~~-p~i~~g~  136 (410)
                      +..++.+...-...++++|+||.+..-.                 ..-..+-+.|...++ .+|..++
T Consensus        75 ~~~Dl~d~~~l~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS  142 (344)
T 2gn4_A           75 FIGDVRDLERLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALST  142 (344)
T ss_dssp             EECCTTCHHHHHHHTTTCSEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             EECCCCCHHHHHHHHhcCCEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecC
Confidence            7777765443445678899999965311                 111345566777765 4566554

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=95.96  E-value=0.0088  Score=55.70  Aligned_cols=93  Identities=14%  Similarity=0.255  Sum_probs=58.5

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      +...+|.|||+|.+|..+++.|+..|...++++|.+.                   .+++.+++.   +  .+.+  . .
T Consensus         8 ~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~-------------------~~~~~~~~~---~--g~~~--~-~   60 (266)
T 3d1l_A            8 IEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE-------------------ESARELAQK---V--EAEY--T-T   60 (266)
T ss_dssp             GGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH-------------------HHHHHHHHH---T--TCEE--E-S
T ss_pred             CCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH-------------------HHHHHHHHH---c--CCce--e-C
Confidence            4567999999999999999999999976577776321                   233322222   1  1222  1 1


Q ss_pred             CCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHH--CCCcEEEec
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA--ADVPLVESG  135 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~--~~~p~i~~g  135 (410)
                      .      ..+.++++|+||.|+.+...+..+.++...  .+..+++..
T Consensus        61 ~------~~~~~~~~Dvvi~av~~~~~~~v~~~l~~~~~~~~ivv~~s  102 (266)
T 3d1l_A           61 D------LAEVNPYAKLYIVSLKDSAFAELLQGIVEGKREEALMVHTA  102 (266)
T ss_dssp             C------GGGSCSCCSEEEECCCHHHHHHHHHHHHTTCCTTCEEEECC
T ss_pred             C------HHHHhcCCCEEEEecCHHHHHHHHHHHHhhcCCCcEEEECC
Confidence            1      124467899999999776655555544322  345566654

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=95.91  E-value=0.014  Score=53.32  Aligned_cols=89  Identities=15%  Similarity=0.057  Sum_probs=59.9

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      .+.+|+|+|+|.+|..+++.|...|.  ++++|.|.                   .+++    .+.   ++  +..+..+
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g~--v~vid~~~-------------------~~~~----~~~---~~--~~~i~gd   57 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSEV--FVLAEDEN-------------------VRKK----VLR---SG--ANFVHGD   57 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSEE--EEEESCGG-------------------GHHH----HHH---TT--CEEEESC
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCe--EEEEECCH-------------------HHHH----HHh---cC--CeEEEcC
Confidence            35689999999999999999999887  88887432                   1111    222   23  3344555


Q ss_pred             CCCCcch-HhhhccCcEEEEccCChHHHHHHHHHHHHCCC
Q 015243           91 VKDPKFN-VEFFKQFNVVLNGLDNLDARRHVNRLCLAADV  129 (410)
Q Consensus        91 i~~~~~~-~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~  129 (410)
                      .++...- ..-++++|.||.++++.+....+...+++.+.
T Consensus        58 ~~~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~   97 (234)
T 2aef_A           58 PTRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDE   97 (234)
T ss_dssp             TTCHHHHHHTTCTTCSEEEECCSCHHHHHHHHHHHHHHCS
T ss_pred             CCCHHHHHhcCcchhcEEEEcCCCcHHHHHHHHHHHHHCC
Confidence            5432211 12367899999999988777777778887654

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=95.90  E-value=0.035  Score=53.17  Aligned_cols=35  Identities=20%  Similarity=0.290  Sum_probs=30.4

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ...+|.|||+|.+|..++++|+..|...++++|.+
T Consensus        23 ~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           23 NAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            35789999999999999999999998789998854

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=95.84  E-value=0.018  Score=58.70  Aligned_cols=100  Identities=17%  Similarity=0.188  Sum_probs=59.6

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      .+..++|+|+|+|++|..++..|+..|--+++++|.+                   ..|++.+++.     +.+.  ...
T Consensus        20 ~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~-------------------~~ka~~la~~-----~~~~--~~~   73 (467)
T 2axq_A           20 RHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRT-------------------LANAQALAKP-----SGSK--AIS   73 (467)
T ss_dssp             ---CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESS-------------------HHHHHHHHGG-----GTCE--EEE
T ss_pred             CCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECC-------------------HHHHHHHHHh-----cCCc--EEE
Confidence            4667899999999999999999999843468888733                   1233333221     1232  222


Q ss_pred             cCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEec
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g  135 (410)
                      .++.+.....+.+.++|+||+++... ....+...|...++.+++..
T Consensus        74 ~D~~d~~~l~~~l~~~DvVIn~tp~~-~~~~v~~a~l~~g~~vvd~~  119 (467)
T 2axq_A           74 LDVTDDSALDKVLADNDVVISLIPYT-FHPNVVKSAIRTKTDVVTSS  119 (467)
T ss_dssp             CCTTCHHHHHHHHHTSSEEEECSCGG-GHHHHHHHHHHHTCEEEECS
T ss_pred             EecCCHHHHHHHHcCCCEEEECCchh-hhHHHHHHHHhcCCEEEEee
Confidence            23322111234567889999987643 22235666777777777653

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=95.75  E-value=0.048  Score=49.52  Aligned_cols=104  Identities=17%  Similarity=0.154  Sum_probs=64.3

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      +..++|+|.| .|+||.++++.|+..|--++++++.+.-....+                          .+ -.++.+.
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~--------------------------~~-~~~~~~~   73 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKP--------------------------YP-TNSQIIM   73 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSS--------------------------CC-TTEEEEE
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhccc--------------------------cc-CCcEEEE
Confidence            4456899999 699999999999999944677777543211100                          00 1355666


Q ss_pred             cCCCCCcchHhhhccCcEEEEccCChHH---HHHHHHHHHHCCC-cEEEecccCcc
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDA---RRHVNRLCLAADV-PLVESGTTGFL  140 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~~---r~~i~~~c~~~~~-p~i~~g~~G~~  140 (410)
                      .++++...-...++++|+||++......   -..+-+.+.+.+. .+|..++.+.+
T Consensus        74 ~Dl~d~~~~~~~~~~~D~vv~~a~~~~~~~~~~~~~~~~~~~~~~~iV~iSS~~~~  129 (236)
T 3qvo_A           74 GDVLNHAALKQAMQGQDIVYANLTGEDLDIQANSVIAAMKACDVKRLIFVLSLGIY  129 (236)
T ss_dssp             CCTTCHHHHHHHHTTCSEEEEECCSTTHHHHHHHHHHHHHHTTCCEEEEECCCCC-
T ss_pred             ecCCCHHHHHHHhcCCCEEEEcCCCCchhHHHHHHHHHHHHcCCCEEEEEecceec
Confidence            6776554445678899999986543221   2234455666665 46666665443

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=95.73  E-value=0.011  Score=55.84  Aligned_cols=80  Identities=25%  Similarity=0.288  Sum_probs=53.4

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      +.+++++|.| +||+|..+++.|+..|.. ++++|.+                   ..|++.+++.+... +.+.+.  .
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~-V~i~~R~-------------------~~~~~~l~~~~~~~-~~~~~~--~  173 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAE-VVLCGRK-------------------LDKAQAAADSVNKR-FKVNVT--A  173 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESS-------------------HHHHHHHHHHHHHH-HTCCCE--E
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEECC-------------------HHHHHHHHHHHHhc-CCcEEE--E
Confidence            5678999999 999999999999999986 8888732                   13556566555442 222222  2


Q ss_pred             cCCCCCcchHhhhccCcEEEEccC
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                      .++++...-...++++|+||+++.
T Consensus       174 ~D~~~~~~~~~~~~~~DvlVn~ag  197 (287)
T 1lu9_A          174 AETADDASRAEAVKGAHFVFTAGA  197 (287)
T ss_dssp             EECCSHHHHHHHTTTCSEEEECCC
T ss_pred             ecCCCHHHHHHHHHhCCEEEECCC
Confidence            233322222356778899999874

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=95.71  E-value=0.029  Score=54.31  Aligned_cols=76  Identities=17%  Similarity=0.265  Sum_probs=52.1

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhh----CCCCeEE
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKF----RPQMSIT   85 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~----np~v~i~   85 (410)
                      +...||.|+|+|.+|+.++..|+..|++++.|+|.+.                   .|++..+..+.+.    ...+++.
T Consensus         3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~-------------------~~~~g~a~dL~~~~~~~~~~~~v~   63 (321)
T 3p7m_A            3 MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ-------------------GMPNGKALDLLQTCPIEGVDFKVR   63 (321)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS-------------------SHHHHHHHHHHTTHHHHTCCCCEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh-------------------HHHHHHHHHHHhhhhhcCCCcEEE
Confidence            3467999999999999999999999987899988432                   2333333444433    2245565


Q ss_pred             EEccCCCCCcchHhhhccCcEEEEccC
Q 015243           86 AHHANVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        86 ~~~~~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                      +...        .+-++++|+||.+..
T Consensus        64 ~t~d--------~~a~~~aDvVIi~ag   82 (321)
T 3p7m_A           64 GTND--------YKDLENSDVVIVTAG   82 (321)
T ss_dssp             EESC--------GGGGTTCSEEEECCS
T ss_pred             EcCC--------HHHHCCCCEEEEcCC
Confidence            4321        245789999999853

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=95.69  E-value=0.025  Score=53.56  Aligned_cols=37  Identities=22%  Similarity=0.302  Sum_probs=34.0

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      +.+++++|+|+||+|..++..|+..|++++++++.+.
T Consensus       115 l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  151 (277)
T 3don_A          115 IEDAYILILGAGGASKGIANELYKIVRPTLTVANRTM  151 (277)
T ss_dssp             GGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            6789999999999999999999999999999997654

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=95.65  E-value=0.054  Score=51.51  Aligned_cols=34  Identities=29%  Similarity=0.471  Sum_probs=27.7

Q ss_pred             HhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      |++++|+|.|+ |+||..+++.|+..|. +++++|.
T Consensus         1 m~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r   35 (345)
T 2z1m_A            1 MSGKRALITGIRGQDGAYLAKLLLEKGY-EVYGADR   35 (345)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEC
Confidence            35688999996 9999999999999995 5777764

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=95.64  E-value=0.036  Score=53.74  Aligned_cols=75  Identities=25%  Similarity=0.330  Sum_probs=53.5

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCC-CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC---CCeEEE
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP---QMSITA   86 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np---~v~i~~   86 (410)
                      ...||.|+|+|.+|+.++..|+..|+ +++.|+|.+                   ..|++..+.-+....|   .+++..
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~-------------------~~k~~g~a~DL~~~~~~~~~~~i~~   68 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF-------------------KDKTKGDAIDLEDALPFTSPKKIYS   68 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC-------------------HHHHHHHHHHHHTTGGGSCCCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC-------------------hHHHHHHHhhHhhhhhhcCCcEEEE
Confidence            45789999999999999999999998 589998832                   3456665666665443   334332


Q ss_pred             EccCCCCCcchHhhhccCcEEEEccCC
Q 015243           87 HHANVKDPKFNVEFFKQFNVVLNGLDN  113 (410)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~DvVi~a~Dn  113 (410)
                        +.       .+-++++|+||.+...
T Consensus        69 --~~-------~~a~~~aDiVvi~ag~   86 (326)
T 3vku_A           69 --AE-------YSDAKDADLVVITAGA   86 (326)
T ss_dssp             --CC-------GGGGTTCSEEEECCCC
T ss_pred             --Cc-------HHHhcCCCEEEECCCC
Confidence              11       2447899999997643

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=95.60  E-value=0.082  Score=48.65  Aligned_cols=109  Identities=18%  Similarity=0.226  Sum_probs=58.7

Q ss_pred             HHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEE
Q 015243            7 LEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (410)
Q Consensus         7 q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~   86 (410)
                      ...+..++|.|||+|.+|..++++|+..|. ++++.|.+.-.  .+.+.   .....+....    +.+.+..+....  
T Consensus        14 ~~~~~~~kIgiIG~G~mG~alA~~L~~~G~-~V~~~~r~~~~--~~~~~---~~~~~~~~~~----~~~~~~~~~~~~--   81 (245)
T 3dtt_A           14 NLYFQGMKIAVLGTGTVGRTMAGALADLGH-EVTIGTRDPKA--TLARA---EPDAMGAPPF----SQWLPEHPHVHL--   81 (245)
T ss_dssp             -----CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHH--HHTCC----------CCH----HHHGGGSTTCEE--
T ss_pred             ccccCCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCChhh--hhhhh---hhhhhcchhh----hHHHhhcCceec--
Confidence            357889999999999999999999999996 58888754311  00000   0001111111    111111222211  


Q ss_pred             EccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHH-H-HHCCCcEEEec
Q 015243           87 HHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL-C-LAADVPLVESG  135 (410)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~-c-~~~~~p~i~~g  135 (410)
                              ....+.++++|+||.|+-....+..+.+. . ...+..+|+..
T Consensus        82 --------~~~~e~~~~aDvVilavp~~~~~~~~~~i~~~~l~g~ivi~~s  124 (245)
T 3dtt_A           82 --------AAFADVAAGAELVVNATEGASSIAALTAAGAENLAGKILVDIA  124 (245)
T ss_dssp             --------EEHHHHHHHCSEEEECSCGGGHHHHHHHHCHHHHTTSEEEECC
T ss_pred             --------cCHHHHHhcCCEEEEccCcHHHHHHHHHhhhhhcCCCEEEECC
Confidence                    11345678899999999876666555443 1 11455566554

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=95.58  E-value=0.032  Score=51.46  Aligned_cols=83  Identities=13%  Similarity=0.264  Sum_probs=55.0

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC-CeEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ-MSITA   86 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~-v~i~~   86 (410)
                      .+++++++|.| .||||.++++.|+..|. ++.++|.+                   ..+.+.+++.+.+.++. .++..
T Consensus         4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~   63 (250)
T 3nyw_A            4 EKQKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARS-------------------KQNLEKVHDEIMRSNKHVQEPIV   63 (250)
T ss_dssp             -CCCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESC-------------------HHHHHHHHHHHHHHCTTSCCCEE
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHHhccccCcceE
Confidence            35678889998 58999999999999997 58887742                   23556666677766554 45666


Q ss_pred             EccCCCCCcchHhh-------hccCcEEEEcc
Q 015243           87 HHANVKDPKFNVEF-------FKQFNVVLNGL  111 (410)
Q Consensus        87 ~~~~i~~~~~~~~~-------~~~~DvVi~a~  111 (410)
                      +..++++...-..+       +.+.|++|++.
T Consensus        64 ~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvnnA   95 (250)
T 3nyw_A           64 LPLDITDCTKADTEIKDIHQKYGAVDILVNAA   95 (250)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHCCEEEEEECC
T ss_pred             EeccCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            66666543222222       23567777753

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=95.57  E-value=0.058  Score=50.72  Aligned_cols=99  Identities=23%  Similarity=0.315  Sum_probs=58.9

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        13 ~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      ++|+|.|+ |.||..+++.|+..|. +++++|...-...    ..                     ..+  .++.+..++
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~----~~---------------------~~~--~~~~~~~Dl   52 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGY-EVVVVDNLSSGRR----EF---------------------VNP--SAELHVRDL   52 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCCSSCCG----GG---------------------SCT--TSEEECCCT
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC-EEEEEeCCCCCch----hh---------------------cCC--CceEEECcc
Confidence            47999996 9999999999999996 5777764321100    00                     012  234455555


Q ss_pred             CCCcchHhhhccCcEEEEccC-----------------ChHHHHHHHHHHHHCCC-cEEEecccCccc
Q 015243           92 KDPKFNVEFFKQFNVVLNGLD-----------------NLDARRHVNRLCLAADV-PLVESGTTGFLG  141 (410)
Q Consensus        92 ~~~~~~~~~~~~~DvVi~a~D-----------------n~~~r~~i~~~c~~~~~-p~i~~g~~G~~G  141 (410)
                      .+.. ....++. |+||.+..                 |...-..+-+.|.+.++ .+|..++.+.+|
T Consensus        53 ~d~~-~~~~~~~-d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~vyg  118 (312)
T 3ko8_A           53 KDYS-WGAGIKG-DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYG  118 (312)
T ss_dssp             TSTT-TTTTCCC-SEEEECCSSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGC
T ss_pred             ccHH-HHhhcCC-CEEEECCCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHhC
Confidence            4443 3344555 99998643                 11222345566666665 677776665544

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=95.57  E-value=0.033  Score=53.95  Aligned_cols=73  Identities=21%  Similarity=0.220  Sum_probs=51.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCC-CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC----CCeEEE
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP----QMSITA   86 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np----~v~i~~   86 (410)
                      ..||.|+|+|.+|+.++..|+..|. ++++++|.+                   ..|++..+.-|+...|    .+++. 
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~-------------------~~k~~g~a~DL~~~~~~~~~~v~i~-   64 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVN-------------------KEKAMGDVMDLNHGKAFAPQPVKTS-   64 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC-------------------HHHHHHHHHHHHHTGGGSSSCCEEE-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc-------------------hHHHHHHHHHHHhccccccCCeEEE-
Confidence            4689999999999999999999997 589998832                   3456655555555433    33332 


Q ss_pred             EccCCCCCcchHhhhccCcEEEEccC
Q 015243           87 HHANVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                       ...       .+-++++|+||.+..
T Consensus        65 -~~~-------~~a~~~aDvVvi~ag   82 (326)
T 3pqe_A           65 -YGT-------YEDCKDADIVCICAG   82 (326)
T ss_dssp             -EEC-------GGGGTTCSEEEECCS
T ss_pred             -eCc-------HHHhCCCCEEEEecc
Confidence             111       234689999999764

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=95.54  E-value=0.028  Score=51.97  Aligned_cols=82  Identities=23%  Similarity=0.353  Sum_probs=53.9

Q ss_pred             HHhCCcEEEECC-c-HHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEE
Q 015243            9 AIKGAKVLMVGA-G-GIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (410)
Q Consensus         9 ~L~~~~VlvvG~-G-giG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~   86 (410)
                      .+++++|+|.|+ | |||.++++.|+..|.. +.++|.+                   ..+.+.+.+.+++.. ..++..
T Consensus        19 ~l~~k~vlITGasg~GIG~~~a~~l~~~G~~-V~~~~r~-------------------~~~~~~~~~~l~~~~-~~~~~~   77 (266)
T 3o38_A           19 LLKGKVVLVTAAAGTGIGSTTARRALLEGAD-VVISDYH-------------------ERRLGETRDQLADLG-LGRVEA   77 (266)
T ss_dssp             TTTTCEEEESSCSSSSHHHHHHHHHHHTTCE-EEEEESC-------------------HHHHHHHHHHHHTTC-SSCEEE
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHCCCE-EEEecCC-------------------HHHHHHHHHHHHhcC-CCceEE
Confidence            467889999998 7 8999999999999965 7777643                   234445555555543 346777


Q ss_pred             EccCCCCCcchHhhh-------ccCcEEEEcc
Q 015243           87 HHANVKDPKFNVEFF-------KQFNVVLNGL  111 (410)
Q Consensus        87 ~~~~i~~~~~~~~~~-------~~~DvVi~a~  111 (410)
                      +..++++...-..++       .+.|+||++.
T Consensus        78 ~~~Dl~~~~~v~~~~~~~~~~~g~id~li~~A  109 (266)
T 3o38_A           78 VVCDVTSTEAVDALITQTVEKAGRLDVLVNNA  109 (266)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEeCCCCHHHHHHHHHHHHHHhCCCcEEEECC
Confidence            777775432222222       3567777753

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=95.51  E-value=0.061  Score=50.10  Aligned_cols=84  Identities=13%  Similarity=0.223  Sum_probs=55.1

Q ss_pred             HHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEE
Q 015243            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (410)
Q Consensus         8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~   86 (410)
                      ..|.+++|+|.| .|+||.++++.|+..|. ++.++|.+                   ..+.+.+++.+++.....++..
T Consensus        28 ~~l~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~   87 (279)
T 1xg5_A           28 ERWRDRLALVTGASGGIGAAVARALVQQGL-KVVGCART-------------------VGNIEELAAECKSAGYPGTLIP   87 (279)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTCSSEEEE
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECC-------------------hHHHHHHHHHHHhcCCCceEEE
Confidence            347788899997 68999999999999996 47776632                   1234445555655544446666


Q ss_pred             EccCCCCCcchHhhh-------ccCcEEEEcc
Q 015243           87 HHANVKDPKFNVEFF-------KQFNVVLNGL  111 (410)
Q Consensus        87 ~~~~i~~~~~~~~~~-------~~~DvVi~a~  111 (410)
                      +..++++...-..++       .+.|+||++.
T Consensus        88 ~~~Dl~~~~~v~~~~~~~~~~~g~iD~vi~~A  119 (279)
T 1xg5_A           88 YRCDLSNEEDILSMFSAIRSQHSGVDICINNA  119 (279)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHCCCSEEEECC
T ss_pred             EEecCCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence            766775432222222       3678888754

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=95.50  E-value=0.072  Score=48.80  Aligned_cols=81  Identities=23%  Similarity=0.435  Sum_probs=54.3

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      |++++|+|.| .||||.++++.|+..|...+.++|.+.               +    + + ..+.+.+..+..++..+.
T Consensus         3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~---------------~----~-~-~~~~l~~~~~~~~~~~~~   61 (254)
T 1sby_A            3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE---------------N----P-T-ALAELKAINPKVNITFHT   61 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC---------------C----H-H-HHHHHHHHCTTSEEEEEE
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCc---------------h----H-H-HHHHHHHhCCCceEEEEE
Confidence            5678899997 689999999999999987788877331               0    0 1 123344555556777777


Q ss_pred             cCCCCC-cchHhhh-------ccCcEEEEcc
Q 015243           89 ANVKDP-KFNVEFF-------KQFNVVLNGL  111 (410)
Q Consensus        89 ~~i~~~-~~~~~~~-------~~~DvVi~a~  111 (410)
                      .++++. .....++       .+.|+||++.
T Consensus        62 ~D~~~~~~~~~~~~~~~~~~~g~id~lv~~A   92 (254)
T 1sby_A           62 YDVTVPVAESKKLLKKIFDQLKTVDILINGA   92 (254)
T ss_dssp             CCTTSCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EecCCChHHHHHHHHHHHHhcCCCCEEEECC
Confidence            777654 2222222       3789999854

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=95.50  E-value=0.035  Score=55.61  Aligned_cols=90  Identities=17%  Similarity=0.241  Sum_probs=62.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      +.+|+|+|+|.+|..+++.|...|+. ++++|.|.-                   +++.    +++.  +  +..+.++.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~-vvvId~d~~-------------------~v~~----~~~~--g--~~vi~GDa   55 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVK-MVVLDHDPD-------------------HIET----LRKF--G--MKVFYGDA   55 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC-EEEEECCHH-------------------HHHH----HHHT--T--CCCEESCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCC-EEEEECCHH-------------------HHHH----HHhC--C--CeEEEcCC
Confidence            46899999999999999999999975 899996532                   2222    2222  1  22344454


Q ss_pred             CCCcchHh-hhccCcEEEEccCChHHHHHHHHHHHHCCC
Q 015243           92 KDPKFNVE-FFKQFNVVLNGLDNLDARRHVNRLCLAADV  129 (410)
Q Consensus        92 ~~~~~~~~-~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~  129 (410)
                      ++...... -+.++|+||.++++.+....+-..+++.+.
T Consensus        56 t~~~~L~~agi~~A~~viv~~~~~~~n~~i~~~ar~~~p   94 (413)
T 3l9w_A           56 TRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFP   94 (413)
T ss_dssp             TCHHHHHHTTTTTCSEEEECCSSHHHHHHHHHHHHHHCT
T ss_pred             CCHHHHHhcCCCccCEEEECCCChHHHHHHHHHHHHhCC
Confidence            43322112 257899999999998888888888887654

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=95.47  E-value=0.071  Score=50.75  Aligned_cols=101  Identities=17%  Similarity=0.219  Sum_probs=60.2

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      ++|+|.| .|.+|+.+++.|+..|. +++++|.+.-...++                       ..  +  .++.+..++
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~l-----------------------~~--~--~~~~~~~Dl   65 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGH-DLVLIHRPSSQIQRL-----------------------AY--L--EPECRVAEM   65 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECTTSCGGGG-----------------------GG--G--CCEEEECCT
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecChHhhhhh-----------------------cc--C--CeEEEEecC
Confidence            5899999 59999999999999994 688877543211111                       00  1  234445555


Q ss_pred             CCCcchHhhhccCcEEEEccCC---------------hHHHHHHHHHHHHCCC-cEEEecccCccc
Q 015243           92 KDPKFNVEFFKQFNVVLNGLDN---------------LDARRHVNRLCLAADV-PLVESGTTGFLG  141 (410)
Q Consensus        92 ~~~~~~~~~~~~~DvVi~a~Dn---------------~~~r~~i~~~c~~~~~-p~i~~g~~G~~G  141 (410)
                      ++...-...++++|+||.+...               ...-..+-+.|...++ .+|..++.+.+|
T Consensus        66 ~d~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~  131 (342)
T 2x4g_A           66 LDHAGLERALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAYAMP  131 (342)
T ss_dssp             TCHHHHHHHTTTCSEEEEC------------CHHHHHHHHHHHHHHHHHHHTCSCEEEECCGGGSC
T ss_pred             CCHHHHHHHHcCCCEEEECCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHhhC
Confidence            4433334556778888886421               1122345566766664 677776655443

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.47  E-value=0.13  Score=47.56  Aligned_cols=98  Identities=15%  Similarity=0.068  Sum_probs=61.8

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      +.++|+|.|+|.+|+.+++.|...|. +++.++.+.                   .+...+    ..  +  .++.+..+
T Consensus         4 m~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~-------------------~~~~~~----~~--~--~~~~~~~D   55 (286)
T 3ius_A            4 MTGTLLSFGHGYTARVLSRALAPQGW-RIIGTSRNP-------------------DQMEAI----RA--S--GAEPLLWP   55 (286)
T ss_dssp             -CCEEEEETCCHHHHHHHHHHGGGTC-EEEEEESCG-------------------GGHHHH----HH--T--TEEEEESS
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHCCC-EEEEEEcCh-------------------hhhhhH----hh--C--CCeEEEec
Confidence            35799999999999999999999986 466665321                   112111    11  2  35556666


Q ss_pred             CCCCcchHhhhccCcEEEEccCC----hHHHHHHHHHHHH--CC-CcEEEecccCccc
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLDN----LDARRHVNRLCLA--AD-VPLVESGTTGFLG  141 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~Dn----~~~r~~i~~~c~~--~~-~p~i~~g~~G~~G  141 (410)
                      +++.    + +.++|+||.+...    ......+-+.|.+  .+ ..+|..++.+.+|
T Consensus        56 ~~d~----~-~~~~d~vi~~a~~~~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg  108 (286)
T 3ius_A           56 GEEP----S-LDGVTHLLISTAPDSGGDPVLAALGDQIAARAAQFRWVGYLSTTAVYG  108 (286)
T ss_dssp             SSCC----C-CTTCCEEEECCCCBTTBCHHHHHHHHHHHHTGGGCSEEEEEEEGGGGC
T ss_pred             cccc----c-cCCCCEEEECCCccccccHHHHHHHHHHHhhcCCceEEEEeecceecC
Confidence            6542    2 7899999997532    2233445566666  34 4577777666555

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.47  E-value=0.013  Score=59.67  Aligned_cols=97  Identities=14%  Similarity=0.230  Sum_probs=66.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      .+||+|+|+|.+|..+++.|...|. .++++|.|.-.                   .    +.+.+.   ..+....++.
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~-~v~vId~d~~~-------------------~----~~~~~~---~~~~~i~Gd~   55 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENN-DITIVDKDGDR-------------------L----RELQDK---YDLRVVNGHA   55 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTE-EEEEEESCHHH-------------------H----HHHHHH---SSCEEEESCT
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHH-------------------H----HHHHHh---cCcEEEEEcC
Confidence            4689999999999999999998885 49999965321                   1    222221   1334455555


Q ss_pred             CCCc-chHhhhccCcEEEEccCChHHHHHHHHHHHHC-CCcEEEec
Q 015243           92 KDPK-FNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA-DVPLVESG  135 (410)
Q Consensus        92 ~~~~-~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~-~~p~i~~g  135 (410)
                      ++.. +...-.+++|++|.++++.+.-..+..++++. +.|-+-+.
T Consensus        56 ~~~~~L~~Agi~~ad~~ia~t~~De~Nl~~~~~Ak~~~~~~~~iar  101 (461)
T 4g65_A           56 SHPDVLHEAGAQDADMLVAVTNTDETNMAACQVAFTLFNTPNRIAR  101 (461)
T ss_dssp             TCHHHHHHHTTTTCSEEEECCSCHHHHHHHHHHHHHHHCCSSEEEE
T ss_pred             CCHHHHHhcCCCcCCEEEEEcCChHHHHHHHHHHHHhcCCccceeE
Confidence            4432 22334678999999999988888888888773 66555443

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=95.42  E-value=0.055  Score=50.12  Aligned_cols=83  Identities=20%  Similarity=0.345  Sum_probs=55.7

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .+.+++++|.| .||||.++++.|+..|. ++.++|.+                   ..+.+.+++.+.+..+..++..+
T Consensus        10 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~   69 (267)
T 1iy8_A           10 RFTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVS-------------------SEGLEASKAAVLETAPDAEVLTT   69 (267)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHHCTTCCEEEE
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhhcCCceEEEE
Confidence            46778899997 78999999999999996 47777632                   12344455566665555567777


Q ss_pred             ccCCCCCcchHhhh-------ccCcEEEEcc
Q 015243           88 HANVKDPKFNVEFF-------KQFNVVLNGL  111 (410)
Q Consensus        88 ~~~i~~~~~~~~~~-------~~~DvVi~a~  111 (410)
                      ..++++...-..++       .+.|+||++.
T Consensus        70 ~~D~~~~~~v~~~~~~~~~~~g~id~lv~nA  100 (267)
T 1iy8_A           70 VADVSDEAQVEAYVTATTERFGRIDGFFNNA  100 (267)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred             EccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            77775533222333       3678888853

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=95.42  E-value=0.07  Score=47.66  Aligned_cols=100  Identities=15%  Similarity=0.197  Sum_probs=61.6

Q ss_pred             CcEEEEC-CcHHHHHHHHHHH-HhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           13 AKVLMVG-AGGIGCELLKTLA-LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa-~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      ++|+|.| .|++|.++++.|+ ..|. ++++++.+.-+                  +.+.    +....+  ++..+..+
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r~~~~------------------~~~~----~~~~~~--~~~~~~~D   60 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDM-HITLYGRQLKT------------------RIPP----EIIDHE--RVTVIEGS   60 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCC-EEEEEESSHHH------------------HSCH----HHHTST--TEEEEECC
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCc-eEEEEecCccc------------------cchh----hccCCC--ceEEEECC
Confidence            4599999 5999999999999 8887 57777643110                  1111    111222  45666677


Q ss_pred             CCCCcchHhhhccCcEEEEccC--ChHHHHHHHHHHHHCCC-cEEEecccC
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLD--NLDARRHVNRLCLAADV-PLVESGTTG  138 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~D--n~~~r~~i~~~c~~~~~-p~i~~g~~G  138 (410)
                      +++...-...++++|+||++..  |.. -..+-+.+.+.+. .+|..++.+
T Consensus        61 ~~d~~~~~~~~~~~d~vv~~ag~~n~~-~~~~~~~~~~~~~~~iv~iSs~~  110 (221)
T 3r6d_A           61 FQNPGXLEQAVTNAEVVFVGAMESGSD-MASIVKALSRXNIRRVIGVSMAG  110 (221)
T ss_dssp             TTCHHHHHHHHTTCSEEEESCCCCHHH-HHHHHHHHHHTTCCEEEEEEETT
T ss_pred             CCCHHHHHHHHcCCCEEEEcCCCCChh-HHHHHHHHHhcCCCeEEEEeece
Confidence            7654444567789999999764  334 3334445556554 466555443

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=95.40  E-value=0.044  Score=50.92  Aligned_cols=82  Identities=17%  Similarity=0.303  Sum_probs=58.1

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      |++++++|.| .||||.++++.|+..|.. +.++|.+                   ..+.+.+.+.+.+..+...+..+.
T Consensus         8 l~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~   67 (267)
T 3t4x_A            8 LKGKTALVTGSTAGIGKAIATSLVAEGAN-VLINGRR-------------------EENVNETIKEIRAQYPDAILQPVV   67 (267)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESS-------------------HHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCC-------------------HHHHHHHHHHHHhhCCCceEEEEe
Confidence            5677888888 589999999999999964 7777632                   235566677777777777888877


Q ss_pred             cCCCCCcchHhhh---ccCcEEEEcc
Q 015243           89 ANVKDPKFNVEFF---KQFNVVLNGL  111 (410)
Q Consensus        89 ~~i~~~~~~~~~~---~~~DvVi~a~  111 (410)
                      .++++...-...+   .+.|++|++.
T Consensus        68 ~D~~~~~~~~~~~~~~g~id~lv~nA   93 (267)
T 3t4x_A           68 ADLGTEQGCQDVIEKYPKVDILINNL   93 (267)
T ss_dssp             CCTTSHHHHHHHHHHCCCCSEEEECC
T ss_pred             cCCCCHHHHHHHHHhcCCCCEEEECC
Confidence            7775433222333   3678888853

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=95.39  E-value=0.022  Score=50.84  Aligned_cols=95  Identities=18%  Similarity=0.182  Sum_probs=57.6

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        13 ~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      ++|+|.|+ |++|.++++.|+..|. ++++++.+.                   .+..    .+  ..+.  ++....++
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~-------------------~~~~----~~--~~~~--~~~~~~D~   52 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGH-EVLAVVRDP-------------------QKAA----DR--LGAT--VATLVKEP   52 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHH----HH--TCTT--SEEEECCG
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEecc-------------------cccc----cc--cCCC--ceEEeccc
Confidence            36999996 9999999999999995 577765321                   1111    11  1123  44455566


Q ss_pred             CCCcchHhhhccCcEEEEccCC----------hHHHHHHHHHHHHCCCcEEEeccc
Q 015243           92 KDPKFNVEFFKQFNVVLNGLDN----------LDARRHVNRLCLAADVPLVESGTT  137 (410)
Q Consensus        92 ~~~~~~~~~~~~~DvVi~a~Dn----------~~~r~~i~~~c~~~~~p~i~~g~~  137 (410)
                      ++...  ..+.++|+||.+...          ...-..+-+.|.+.+..+|..++.
T Consensus        53 ~d~~~--~~~~~~d~vi~~ag~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~  106 (224)
T 3h2s_A           53 LVLTE--ADLDSVDAVVDALSVPWGSGRGYLHLDFATHLVSLLRNSDTLAVFILGS  106 (224)
T ss_dssp             GGCCH--HHHTTCSEEEECCCCCTTSSCTHHHHHHHHHHHHTCTTCCCEEEEECCG
T ss_pred             ccccH--hhcccCCEEEECCccCCCcchhhHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence            44332  667899999997632          222333444455555666665544

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=95.38  E-value=0.047  Score=52.75  Aligned_cols=167  Identities=15%  Similarity=0.234  Sum_probs=89.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC---CCCeEEEEc
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR---PQMSITAHH   88 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~n---p~v~i~~~~   88 (410)
                      -.+|.|||+|-+|+-++..++..|+. ++|+|.+.=.   +.+         +..+.....+.+.+..   +....+..-
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~-V~l~D~~~~~---l~~---------~~~~i~~~l~~~~~~g~~~~~~~~~~~l   72 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFR-VKLYDIEPRQ---ITG---------ALENIRKEMKSLQQSGSLKGSLSAEEQL   72 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCC-EEEECSCHHH---HHH---------HHHHHHHHHHHHHHTTCCCSSSCHHHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCe-EEEEECCHHH---HHH---------HHHHHHHHHHHHHHcCCCCCccCHHHHH
Confidence            46899999999999999999999986 8999865311   110         1111111111111110   010000000


Q ss_pred             cCCCCCcchHhhhccCcEEEEcc-CChHHHHHHHHHHHHCCC--cEEEecccCccce-EEEEeCCCCccccccCCCCCCC
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGFLGQ-VTVHVKGKTECYECQPKPAPKT  164 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~-Dn~~~r~~i~~~c~~~~~--p~i~~g~~G~~G~-v~~~~~~~t~c~~C~~~~~~~~  164 (410)
                      .+++......+-++++|+|+.|+ .+.+.+..+-+.....-.  .++.+.|.++.-. +.-......-|...++-.++.-
T Consensus        73 ~~i~~~~~l~~a~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~~~~~p~r~ig~HffNP~~~  152 (319)
T 3ado_A           73 SLISSCTNLAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAHVKQCIVAHPVNPPYY  152 (319)
T ss_dssp             HTEEEECCHHHHTTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHTTCTTGGGEEEEEECSSTTT
T ss_pred             hhcccccchHhHhccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhhhccCCCcEEEecCCCCccc
Confidence            11100011234578999999986 677777666555544433  3666666654311 0000111222333333344455


Q ss_pred             CCceeeccCCCcchHHHHHHHHHHHHHH
Q 015243          165 YPVCTITSTPSKFVHCIVWAKDLLFAKL  192 (410)
Q Consensus       165 ~p~cti~~~p~~~~h~i~~a~~~~f~~~  192 (410)
                      -|...+...+.+....+..+.+ +...+
T Consensus       153 m~LVEiv~g~~Ts~~~~~~~~~-~~~~~  179 (319)
T 3ado_A          153 IPLVELVPHPETSPATVDRTHA-LMRKI  179 (319)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHH-HHHHT
T ss_pred             cchHHhcCCCCCcHHHHHHHHH-HHHHh
Confidence            6788888888888888888887 34443

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=95.38  E-value=0.025  Score=57.32  Aligned_cols=34  Identities=26%  Similarity=0.339  Sum_probs=29.6

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ..++|+|+|+|++|..+++.|+..|. +++++|.+
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~-~V~v~~R~   35 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRT   35 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcC-EEEEEECC
Confidence            46789999999999999999999995 58888754

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=95.36  E-value=0.05  Score=52.70  Aligned_cols=40  Identities=25%  Similarity=0.387  Sum_probs=31.2

Q ss_pred             HHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            6 QLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         6 ~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .+.+....+|.|+|+|.+|..++..|+..|...++|+|.+
T Consensus         8 ~~~~~~~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~   47 (328)
T 2hjr_A            8 YNTVIMRKKISIIGAGQIGSTIALLLGQKDLGDVYMFDII   47 (328)
T ss_dssp             -----CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             hcccCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            3444456799999999999999999999998559999854

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=95.34  E-value=0.15  Score=48.71  Aligned_cols=32  Identities=28%  Similarity=0.526  Sum_probs=28.9

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC-CcEEEEeC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGF-QDIHIIDM   44 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~   44 (410)
                      .+|.|+|+|.+|+.++..|+..|+ .+++++|.
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~   34 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDA   34 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcC
Confidence            489999999999999999999997 67888884

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=95.31  E-value=0.056  Score=50.15  Aligned_cols=82  Identities=20%  Similarity=0.265  Sum_probs=57.0

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      |.++.++|.| .||||.++++.|+..|.. +.++|.+                   ..+.+.+.+.+.+..+..++..+.
T Consensus         6 l~~k~~lVTGas~GIG~aia~~l~~~G~~-V~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~   65 (265)
T 3lf2_A            6 LSEAVAVVTGGSSGIGLATVELLLEAGAA-VAFCARD-------------------GERLRAAESALRQRFPGARLFASV   65 (265)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESC-------------------HHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCC-------------------HHHHHHHHHHHHHhcCCceEEEEe
Confidence            5678899997 689999999999999975 7777632                   245566667777766766677777


Q ss_pred             cCCCCCcchHhh-------hccCcEEEEcc
Q 015243           89 ANVKDPKFNVEF-------FKQFNVVLNGL  111 (410)
Q Consensus        89 ~~i~~~~~~~~~-------~~~~DvVi~a~  111 (410)
                      .++++...-..+       +.+.|++|++.
T Consensus        66 ~Dv~~~~~v~~~~~~~~~~~g~id~lvnnA   95 (265)
T 3lf2_A           66 CDVLDALQVRAFAEACERTLGCASILVNNA   95 (265)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHCSCSEEEECC
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            777553222222       23567777753

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=95.31  E-value=0.079  Score=49.94  Aligned_cols=99  Identities=22%  Similarity=0.244  Sum_probs=58.1

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      ++|+|.| .|.||..+++.|+..|  ++..++...-.  ..  ..                     ..+  .++.+..++
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g--~~v~~~~~~~~--~~--~~---------------------~~~--~~~~~~~Dl   52 (313)
T 3ehe_A            2 SLIVVTGGAGFIGSHVVDKLSESN--EIVVIDNLSSG--NE--EF---------------------VNE--AARLVKADL   52 (313)
T ss_dssp             -CEEEETTTSHHHHHHHHHHTTTS--CEEEECCCSSC--CG--GG---------------------SCT--TEEEECCCT
T ss_pred             CEEEEECCCchHHHHHHHHHHhCC--CEEEEEcCCCC--Ch--hh---------------------cCC--CcEEEECcC
Confidence            4799998 5999999999999999  45554421110  00  00                     011  245556666


Q ss_pred             CCCcchHhhhccCcEEEEccCC-----------------hHHHHHHHHHHHHCCC-cEEEecccCccc
Q 015243           92 KDPKFNVEFFKQFNVVLNGLDN-----------------LDARRHVNRLCLAADV-PLVESGTTGFLG  141 (410)
Q Consensus        92 ~~~~~~~~~~~~~DvVi~a~Dn-----------------~~~r~~i~~~c~~~~~-p~i~~g~~G~~G  141 (410)
                      ++ ..-.+.++++|+||.+...                 ...-..+-+.|.+.+. .+|..++.+.+|
T Consensus        53 ~~-~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~vyg  119 (313)
T 3ehe_A           53 AA-DDIKDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYG  119 (313)
T ss_dssp             TT-SCCHHHHTTCSEEEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCGGGGC
T ss_pred             Ch-HHHHHHhcCCCEEEECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCchHHhC
Confidence            55 3345667789999875421                 1122334455666665 677777666554

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=95.29  E-value=0.049  Score=50.29  Aligned_cols=34  Identities=18%  Similarity=0.335  Sum_probs=29.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCC---CcEEEEeCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMD   45 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv---~~i~liD~D   45 (410)
                      ..+|.|||+|.+|+.+++.|+..|.   ..++++|.+
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~   40 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPS   40 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCC
Confidence            4689999999999999999999995   578888754

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=95.28  E-value=0.077  Score=51.69  Aligned_cols=108  Identities=14%  Similarity=0.189  Sum_probs=63.3

Q ss_pred             HHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .+..++|+|.|+ |.||..+++.|+..|..+++++|...-..    ...+ .                    ..-.++.+
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~----~~~l-~--------------------~~~~v~~~   83 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAE----KINV-P--------------------DHPAVRFS   83 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCC----GGGS-C--------------------CCTTEEEE
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCc----hhhc-c--------------------CCCceEEE
Confidence            466788999995 99999999999999944677776432110    0000 0                    01245556


Q ss_pred             ccCCCCCcchHhhhccCcEEEEccCCh-----------------HHHHHHHHHHHHC-CC-cEEEecccCccc
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGLDNL-----------------DARRHVNRLCLAA-DV-PLVESGTTGFLG  141 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn~-----------------~~r~~i~~~c~~~-~~-p~i~~g~~G~~G  141 (410)
                      ..++++...-...++++|+||.+....                 ..-..+-+.|.+. ++ .+|..++.+.+|
T Consensus        84 ~~Dl~d~~~l~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~vyg  156 (377)
T 2q1s_A           84 ETSITDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIA  156 (377)
T ss_dssp             CSCTTCHHHHHHCCSCCSEEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC----
T ss_pred             ECCCCCHHHHHHHhhCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHHHcC
Confidence            666654333345667899999864321                 1123445566666 54 677776655444

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=95.28  E-value=0.064  Score=51.64  Aligned_cols=37  Identities=32%  Similarity=0.650  Sum_probs=31.3

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCC-CcEEEEeCC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~D   45 (410)
                      +++..||.|+|+|.+|..++..|+..|. ..+.|+|-+
T Consensus         3 ~m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~   40 (317)
T 3d0o_A            3 KFKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD   40 (317)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            4456799999999999999999999886 679998843

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=95.25  E-value=0.084  Score=50.62  Aligned_cols=71  Identities=18%  Similarity=0.349  Sum_probs=49.0

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh----hCCCCeEEEEcc
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK----FRPQMSITAHHA   89 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~----~np~v~i~~~~~   89 (410)
                      ||.|+|+|.+|..++..|+..|++++.|+|-+.                   .|++..+..+.+    ....+++++..+
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~-------------------~~~~g~~~dl~~~~~~~~~~~~i~~t~d   61 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTP-------------------GKPQGEALDLAHAAAELGVDIRISGSNS   61 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSST-------------------THHHHHHHHHHHHHHHHTCCCCEEEESC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCCh-------------------hhHHHHHHHHHHhhhhcCCCeEEEECCC
Confidence            689999999999999999999996699998431                   222222233332    344566766422


Q ss_pred             CCCCCcchHhhhccCcEEEEcc
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGL  111 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~  111 (410)
                            +  +-++++|+||.+.
T Consensus        62 ------~--~a~~~aD~Vi~~a   75 (308)
T 2d4a_B           62 ------Y--EDMRGSDIVLVTA   75 (308)
T ss_dssp             ------G--GGGTTCSEEEECC
T ss_pred             ------H--HHhCCCCEEEEeC
Confidence                  1  2378999999984

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=95.24  E-value=0.075  Score=50.69  Aligned_cols=73  Identities=18%  Similarity=0.139  Sum_probs=48.9

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCC-cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC----CCCeEEEE
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR----PQMSITAH   87 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~-~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~n----p~v~i~~~   87 (410)
                      +||.|+|+|.+|..++..|+..|.. +++|+|.+.                   .|++..+..+.+.+    ...+|.+.
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~-------------------~~~~g~~~dl~~~~~~~~~~~~i~~t   61 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE-------------------DLAVGEAMDLAHAAAGIDKYPKIVGG   61 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH-------------------HHHHHHHHHHHHHHHTTTCCCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh-------------------HHHHHHHHHHHhhhhhcCCCCEEEEe
Confidence            4799999999999999999999974 799988432                   23332222233322    34466553


Q ss_pred             ccCCCCCcchHhhhccCcEEEEccC
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                      .+        .+-++++|+||.+..
T Consensus        62 ~d--------~~a~~~aDiVViaag   78 (294)
T 1oju_A           62 AD--------YSLLKGSEIIVVTAG   78 (294)
T ss_dssp             SC--------GGGGTTCSEEEECCC
T ss_pred             CC--------HHHhCCCCEEEECCC
Confidence            22        244789999999764

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=95.21  E-value=0.11  Score=49.53  Aligned_cols=37  Identities=27%  Similarity=0.349  Sum_probs=28.6

Q ss_pred             HHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ..+..++|+|.| .|+||..+++.|+..| .+++++|.+
T Consensus        17 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~   54 (333)
T 2q1w_A           17 RGSHMKKVFITGICGQIGSHIAELLLERG-DKVVGIDNF   54 (333)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECC
T ss_pred             ecCCCCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEECC
Confidence            356778999998 6999999999999999 468887754

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=95.20  E-value=0.093  Score=50.66  Aligned_cols=118  Identities=14%  Similarity=0.228  Sum_probs=67.3

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHH--hCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEE
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLAL--SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~--~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~   86 (410)
                      +..++|+|.| .|+||..+++.|+.  .|. +++++|...-.. .....   ..+.+++.         ... +...+..
T Consensus         8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g~-~V~~~~r~~~~~-~~~~~---~~~~~~~~---------~~~-~~~~~~~   72 (362)
T 3sxp_A            8 LENQTILITGGAGFVGSNLAFHFQENHPKA-KVVVLDKFRSNT-LFSNN---RPSSLGHF---------KNL-IGFKGEV   72 (362)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHCTTS-EEEEEECCCCC-----------CCCCCCG---------GGG-TTCCSEE
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHhhCCCC-eEEEEECCCccc-ccccc---chhhhhhh---------hhc-cccCceE
Confidence            5678999997 69999999999999  675 477777432100 00000   00111111         011 1223455


Q ss_pred             EccCCCCCcchHhh-hccCcEEEEccC-------C--------hHHHHHHHHHHHHCCCcEEEecccCccce
Q 015243           87 HHANVKDPKFNVEF-FKQFNVVLNGLD-------N--------LDARRHVNRLCLAADVPLVESGTTGFLGQ  142 (410)
Q Consensus        87 ~~~~i~~~~~~~~~-~~~~DvVi~a~D-------n--------~~~r~~i~~~c~~~~~p~i~~g~~G~~G~  142 (410)
                      +..++++...-... ..++|+||.+..       +        ...-..+-+.|.+.+.++|..++.+.+|.
T Consensus        73 ~~~Dl~d~~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~V~~SS~~vyg~  144 (362)
T 3sxp_A           73 IAADINNPLDLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAKVIYASSAGVYGN  144 (362)
T ss_dssp             EECCTTCHHHHHHHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEGGGGCS
T ss_pred             EECCCCCHHHHHHhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCcHHHhCC
Confidence            56666543323334 678899998642       1        12234566677888878888877665553

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=95.19  E-value=0.049  Score=50.51  Aligned_cols=95  Identities=12%  Similarity=0.122  Sum_probs=60.5

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      .++|+|.| .|+||.++++.|+..|. ++.++|.+.....                              ..+++.+..+
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~-~V~~~~r~~~~~~------------------------------~~~~~~~~~D   51 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAE-ILRLADLSPLDPA------------------------------GPNEECVQCD   51 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEE-EEEEEESSCCCCC------------------------------CTTEEEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCC-EEEEEecCCcccc------------------------------CCCCEEEEcC
Confidence            46789998 79999999999999985 5777774432111                              1245556666


Q ss_pred             CCCCcchHhhhccCcEEEEcc-----CC--------hHHHHHHHHHHHHCCC-cEEEeccc
Q 015243           91 VKDPKFNVEFFKQFNVVLNGL-----DN--------LDARRHVNRLCLAADV-PLVESGTT  137 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~-----Dn--------~~~r~~i~~~c~~~~~-p~i~~g~~  137 (410)
                      +++...-..++++.|+||.+.     ++        ...-..+-+.|++.+. .+|..++.
T Consensus        52 l~d~~~~~~~~~~~D~vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~  112 (267)
T 3rft_A           52 LADANAVNAMVAGCDGIVHLGGISVEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSN  112 (267)
T ss_dssp             TTCHHHHHHHHTTCSEEEECCSCCSCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred             CCCHHHHHHHHcCCCEEEECCCCcCcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcch
Confidence            655443445677888888853     11        1222455666777664 56665554

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=95.18  E-value=0.042  Score=51.74  Aligned_cols=32  Identities=25%  Similarity=0.426  Sum_probs=28.2

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ++|.|||+|.+|+.++++|+..|. ++++.|.+
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~   33 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRS   33 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCC
Confidence            689999999999999999999995 57887744

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=95.14  E-value=0.086  Score=48.95  Aligned_cols=75  Identities=19%  Similarity=0.255  Sum_probs=52.9

Q ss_pred             cEEEECC-cHHHHHHHHHHHHh-CCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           14 KVLMVGA-GGIGCELLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        14 ~VlvvG~-GgiG~ev~knLa~~-Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      ||.|+|+ |.+|..+++.+... |..-+-++|.+                                           .+ 
T Consensus         2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~-------------------------------------------~d-   37 (245)
T 1p9l_A            2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG-------------------------------------------DP-   37 (245)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT-------------------------------------------CC-
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC-------------------------------------------CC-
Confidence            7999997 99999999998765 65444465532                                           01 


Q ss_pred             CCCcchHhhh-ccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCc
Q 015243           92 KDPKFNVEFF-KQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGF  139 (410)
Q Consensus        92 ~~~~~~~~~~-~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~  139 (410)
                          .. +++ .+.|+||+++ ++++-...-..|.++++|++-+.+ |+
T Consensus        38 ----l~-~~~~~~~DvvIDfT-~p~a~~~~~~~a~~~g~~~VigTT-G~   79 (245)
T 1p9l_A           38 ----LS-LLTDGNTEVVIDFT-HPDVVMGNLEFLIDNGIHAVVGTT-GF   79 (245)
T ss_dssp             ----TH-HHHHTTCCEEEECS-CTTTHHHHHHHHHHTTCEEEECCC-CC
T ss_pred             ----HH-HHhccCCcEEEEcc-ChHHHHHHHHHHHHcCCCEEEcCC-CC
Confidence                11 223 3789999988 456666667789999999877643 44

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=95.12  E-value=0.071  Score=50.01  Aligned_cols=83  Identities=22%  Similarity=0.348  Sum_probs=53.5

Q ss_pred             HHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEE
Q 015243            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (410)
Q Consensus         8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~   86 (410)
                      ..+++++|+|.| .||||.++++.|+..|. ++.++|.+                   ..|.+.+.+.+++..+ .++..
T Consensus         8 ~~~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~~-~~~~~   66 (311)
T 3o26_A            8 TVTKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRD-------------------VTKGHEAVEKLKNSNH-ENVVF   66 (311)
T ss_dssp             ----CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHTTTC-CSEEE
T ss_pred             ccCCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhcCC-CceEE
Confidence            356778888888 58999999999999997 58887643                   2355555666666543 35667


Q ss_pred             EccCCCCC-cchHhh-------hccCcEEEEcc
Q 015243           87 HHANVKDP-KFNVEF-------FKQFNVVLNGL  111 (410)
Q Consensus        87 ~~~~i~~~-~~~~~~-------~~~~DvVi~a~  111 (410)
                      +..++++. ..-..+       +.+.|+||++.
T Consensus        67 ~~~Dl~~~~~~v~~~~~~~~~~~g~iD~lv~nA   99 (311)
T 3o26_A           67 HQLDVTDPIATMSSLADFIKTHFGKLDILVNNA   99 (311)
T ss_dssp             EECCTTSCHHHHHHHHHHHHHHHSSCCEEEECC
T ss_pred             EEccCCCcHHHHHHHHHHHHHhCCCCCEEEECC
Confidence            77777554 222222       34788888854

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=95.12  E-value=0.098  Score=51.00  Aligned_cols=103  Identities=12%  Similarity=0.046  Sum_probs=60.9

Q ss_pred             hCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           11 KGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        11 ~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      ..++|+|.|+ |.||..+++.|+..|. +++++|.+.-....+                         ..+.  ++.+..
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~-------------------------~~~~--v~~~~~   79 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEGH-YVIASDWKKNEHMTE-------------------------DMFC--DEFHLV   79 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCSSSCG-------------------------GGTC--SEEEEC
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEECCCccchhh-------------------------ccCC--ceEEEC
Confidence            3468999996 9999999999999995 688877542110000                         0112  333445


Q ss_pred             CCCCCcchHhhhccCcEEEEccCC----------hH--------HHHHHHHHHHHCCC-cEEEecccCccc
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLDN----------LD--------ARRHVNRLCLAADV-PLVESGTTGFLG  141 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~Dn----------~~--------~r~~i~~~c~~~~~-p~i~~g~~G~~G  141 (410)
                      ++++...-...++++|+||.+...          ..        .-..+-+.|.+.++ .+|..++.+.+|
T Consensus        80 Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS~~v~~  150 (379)
T 2c5a_A           80 DLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYP  150 (379)
T ss_dssp             CTTSHHHHHHHHTTCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSC
T ss_pred             CCCCHHHHHHHhCCCCEEEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeehheeC
Confidence            554433233556788888886421          11        12345566777765 677766554443

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=95.11  E-value=0.033  Score=52.51  Aligned_cols=31  Identities=26%  Similarity=0.448  Sum_probs=29.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      +++++|+|+||.|..++..|+..| .++++++
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G-~~v~V~n  148 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQG-LQVSVLN  148 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEe
Confidence            789999999999999999999999 9999975

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=95.10  E-value=0.049  Score=50.14  Aligned_cols=78  Identities=14%  Similarity=0.228  Sum_probs=49.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCC---CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv---~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      ..+|.|||+|.+|..+++.|+..|.   .+++++|.+                   ..|++.+++..     .+.+    
T Consensus         2 ~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~-------------------~~~~~~~~~~~-----g~~~----   53 (247)
T 3gt0_A            2 DKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLN-------------------TANLKNASEKY-----GLTT----   53 (247)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSC-------------------HHHHHHHHHHH-----CCEE----
T ss_pred             CCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCC-------------------HHHHHHHHHHh-----CCEE----
Confidence            3689999999999999999999996   368877632                   22444333321     1221    


Q ss_pred             cCCCCCcchHhhhccCcEEEEccCChHHHHHHHH
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNR  122 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~  122 (410)
                         .  ....+.++++|+||.|+.....+..+.+
T Consensus        54 ---~--~~~~e~~~~aDvVilav~~~~~~~v~~~   82 (247)
T 3gt0_A           54 ---T--TDNNEVAKNADILILSIKPDLYASIINE   82 (247)
T ss_dssp             ---C--SCHHHHHHHCSEEEECSCTTTHHHHC--
T ss_pred             ---e--CChHHHHHhCCEEEEEeCHHHHHHHHHH
Confidence               1  1134567889999999965444444443

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=95.10  E-value=0.075  Score=52.13  Aligned_cols=36  Identities=19%  Similarity=0.557  Sum_probs=30.1

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      ++..+|.|||+|.+|..++++|+..|. .++++|.+.
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~   55 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNV   55 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCH
Confidence            456899999999999999999999995 588888654

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=95.08  E-value=0.16  Score=47.08  Aligned_cols=99  Identities=14%  Similarity=0.198  Sum_probs=61.1

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      ++|+|.| .|.+|..+++.|...+-.++.+++.+.-....+                         ..+  .++....++
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~-------------------------~~~--~v~~~~~D~   53 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDD-------------------------WRG--KVSVRQLDY   53 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGG-------------------------GBT--TBEEEECCT
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHh-------------------------hhC--CCEEEEcCC
Confidence            4799999 599999999999987334577766432111100                         012  344555666


Q ss_pred             CCCcchHhhhccCcEEEEccCC-------hHHHHHHHHHHHHCCC-cEEEecccC
Q 015243           92 KDPKFNVEFFKQFNVVLNGLDN-------LDARRHVNRLCLAADV-PLVESGTTG  138 (410)
Q Consensus        92 ~~~~~~~~~~~~~DvVi~a~Dn-------~~~r~~i~~~c~~~~~-p~i~~g~~G  138 (410)
                      ++...-...++++|+||.+...       ...-..+-+.|.+.++ .++..++.|
T Consensus        54 ~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~  108 (289)
T 3e48_A           54 FNQESMVEAFKGMDTVVFIPSIIHPSFKRIPEVENLVYAAKQSGVAHIIFIGYYA  108 (289)
T ss_dssp             TCHHHHHHHTTTCSEEEECCCCCCSHHHHHHHHHHHHHHHHHTTCCEEEEEEESC
T ss_pred             CCHHHHHHHHhCCCEEEEeCCCCccchhhHHHHHHHHHHHHHcCCCEEEEEcccC
Confidence            5544344567899999997532       2333455667777775 466666543

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=95.07  E-value=0.071  Score=48.75  Aligned_cols=81  Identities=17%  Similarity=0.293  Sum_probs=54.2

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      ++.+++|+|.| .||||.++++.|+..|.. +.++|.+                   ..+.+.+.+.+.+..+  ++..+
T Consensus         6 ~~~~k~vlITGas~giG~~~a~~l~~~G~~-V~~~~r~-------------------~~~~~~~~~~~~~~~~--~~~~~   63 (253)
T 3qiv_A            6 RFENKVGIVTGSGGGIGQAYAEALAREGAA-VVVADIN-------------------AEAAEAVAKQIVADGG--TAISV   63 (253)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESC-------------------HHHHHHHHHHHHHTTC--EEEEE
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEcCC-------------------HHHHHHHHHHHHhcCC--cEEEE
Confidence            46788899998 589999999999999975 7777643                   2345555566655443  56666


Q ss_pred             ccCCCCCcchHhhh-------ccCcEEEEcc
Q 015243           88 HANVKDPKFNVEFF-------KQFNVVLNGL  111 (410)
Q Consensus        88 ~~~i~~~~~~~~~~-------~~~DvVi~a~  111 (410)
                      ..++++......++       .+.|+||++.
T Consensus        64 ~~D~~~~~~~~~~~~~~~~~~g~id~li~~A   94 (253)
T 3qiv_A           64 AVDVSDPESAKAMADRTLAEFGGIDYLVNNA   94 (253)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            66765433222333       3678888753

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=95.06  E-value=0.11  Score=49.48  Aligned_cols=73  Identities=18%  Similarity=0.179  Sum_probs=49.9

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC-CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh----hCCCCeEEEE
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK----FRPQMSITAH   87 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~----~np~v~i~~~   87 (410)
                      +||.|+|+|++|+.++-.|+..|. +++.|+|-                   -..|++.-+.-|..    ++...++...
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di-------------------~~~~~~G~a~DL~h~~~~~~~~~~i~~~   61 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDI-------------------AEDLAVGEAMDLAHAAAGIDKYPKIVGG   61 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECS-------------------SHHHHHHHHHHHHHHHGGGTCCCEEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeC-------------------CCCcchhhhhhhhcccccCCCCCeEecC
Confidence            479999999999999999999886 78999882                   23345544444554    3333455442


Q ss_pred             ccCCCCCcchHhhhccCcEEEEccC
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                      .+        .+-++++|+||.+..
T Consensus        62 ~d--------~~~~~~aDvVvitAG   78 (294)
T 2x0j_A           62 AD--------YSLLKGSEIIVVTAG   78 (294)
T ss_dssp             SC--------GGGGTTCSEEEECCC
T ss_pred             CC--------HHHhCCCCEEEEecC
Confidence            11        134789999998654

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=95.05  E-value=0.19  Score=48.05  Aligned_cols=108  Identities=15%  Similarity=0.233  Sum_probs=60.3

Q ss_pred             HHHHHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeE
Q 015243            6 QLEAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSI   84 (410)
Q Consensus         6 ~q~~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i   84 (410)
                      ....+..++|+|.|+ |.||..+++.|+..|. +++++|...-..   .+.                   +..+....++
T Consensus        21 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~---~~~-------------------~~~~~~~~~~   77 (343)
T 2b69_A           21 GHMEKDRKRILITGGAGFVGSHLTDKLMMDGH-EVTVVDNFFTGR---KRN-------------------VEHWIGHENF   77 (343)
T ss_dssp             ------CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCC---GGG-------------------TGGGTTCTTE
T ss_pred             cccccCCCEEEEEcCccHHHHHHHHHHHHCCC-EEEEEeCCCccc---hhh-------------------hhhhccCCce
Confidence            345677899999996 9999999999999985 577776432110   000                   0011111234


Q ss_pred             EEEccCCCCCcchHhhhccCcEEEEccCC---------h--------HHHHHHHHHHHHCCCcEEEecccCccc
Q 015243           85 TAHHANVKDPKFNVEFFKQFNVVLNGLDN---------L--------DARRHVNRLCLAADVPLVESGTTGFLG  141 (410)
Q Consensus        85 ~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn---------~--------~~r~~i~~~c~~~~~p~i~~g~~G~~G  141 (410)
                      +....++.+.     .+.++|+||.+...         .        ..-..+-+.|.+.++.+|..++.+.+|
T Consensus        78 ~~~~~D~~~~-----~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~g  146 (343)
T 2b69_A           78 ELINHDVVEP-----LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYG  146 (343)
T ss_dssp             EEEECCTTSC-----CCCCCSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGGGGB
T ss_pred             EEEeCccCCh-----hhcCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEECcHHHhC
Confidence            4444555432     24678999986431         1        112334456666677788777665544

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=95.04  E-value=0.064  Score=51.66  Aligned_cols=37  Identities=32%  Similarity=0.588  Sum_probs=28.2

Q ss_pred             HHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .+.+++|+|.|+ |.||..+++.|+..|..+++++|..
T Consensus        43 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~   80 (357)
T 2x6t_A           43 GIEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNL   80 (357)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecC
Confidence            456789999996 9999999999999996678888754

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=95.02  E-value=0.087  Score=50.63  Aligned_cols=72  Identities=24%  Similarity=0.310  Sum_probs=49.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCC-CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC----CCeEEE
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP----QMSITA   86 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np----~v~i~~   86 (410)
                      ..||.|+|+|.+|..++..|+..|. +++.++|.+                   ..|++..+..+....+    .+++..
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~-------------------~~~~~~~~~dl~~~~~~~~~~~~i~~   66 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN-------------------ESKAIGDAMDFNHGKVFAPKPVDIWH   66 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS-------------------HHHHHHHHHHHHHHTTSSSSCCEEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC-------------------cchHHHHHhhHHHHhhhcCCCeEEEc
Confidence            4689999999999999999999885 679999843                   1233333333443333    455553


Q ss_pred             EccCCCCCcchHhhhccCcEEEEcc
Q 015243           87 HHANVKDPKFNVEFFKQFNVVLNGL  111 (410)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~DvVi~a~  111 (410)
                        ..       .+-++++|+||.+.
T Consensus        67 --~~-------~~al~~aDvViia~   82 (316)
T 1ldn_A           67 --GD-------YDDCRDADLVVICA   82 (316)
T ss_dssp             --CC-------GGGTTTCSEEEECC
T ss_pred             --Cc-------HHHhCCCCEEEEcC
Confidence              11       13378999999984

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=95.02  E-value=0.15  Score=48.60  Aligned_cols=114  Identities=22%  Similarity=0.173  Sum_probs=63.4

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh-hCCCCeEEEEcc
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK-FRPQMSITAHHA   89 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~-~np~v~i~~~~~   89 (410)
                      .++|+|.| .|+||+.+++.|+..|. +++++|...-...+.         .-...+.    +.+.+ ..+  +++.+..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~r~~---------~~~~~~~----~~l~~~~~~--~~~~~~~   65 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDNFHNAFRGG---------GSLPESL----RRVQELTGR--SVEFEEM   65 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC-CEEEEECSSSSCBCS---------SSSBHHH----HHHHHHHTC--CCEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecCCcccccc---------cccHHHH----HHHHhccCC--ceEEEEC
Confidence            46899998 59999999999999995 577776432110000         0011111    22222 122  3445556


Q ss_pred             CCCCCcchHhhhc--cCcEEEEccCCh-----------------HHHHHHHHHHHHCCC-cEEEecccCccc
Q 015243           90 NVKDPKFNVEFFK--QFNVVLNGLDNL-----------------DARRHVNRLCLAADV-PLVESGTTGFLG  141 (410)
Q Consensus        90 ~i~~~~~~~~~~~--~~DvVi~a~Dn~-----------------~~r~~i~~~c~~~~~-p~i~~g~~G~~G  141 (410)
                      ++++...-...++  ++|+||.+....                 ..-..+-+.|.+.++ .+|..++.+.+|
T Consensus        66 D~~~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g  137 (348)
T 1ek6_A           66 DILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYG  137 (348)
T ss_dssp             CTTCHHHHHHHHHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGC
T ss_pred             CCCCHHHHHHHHHhcCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhC
Confidence            6654333334555  789999864321                 112334456666664 577766655444

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=95.01  E-value=0.1  Score=50.16  Aligned_cols=98  Identities=9%  Similarity=0.078  Sum_probs=60.5

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      ..++|.|||+|.+|..++++|+..|.-+++++|.+.-..                .|++...+.+.+.  .+ .   ...
T Consensus        23 M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~----------------~~~~~~~~~~~~~--g~-~---~~s   80 (317)
T 4ezb_A           23 MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDP----------------AASGALRARAAEL--GV-E---PLD   80 (317)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCT----------------TTHHHHHHHHHHT--TC-E---EES
T ss_pred             cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccc----------------cchHHHHHHHHHC--CC-C---CCC
Confidence            347899999999999999999999954688887443100                1233333333332  22 1   001


Q ss_pred             CCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHH--CCCcEEEecc
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA--ADVPLVESGT  136 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~--~~~p~i~~g~  136 (410)
                            ..+.++++|+||.|+........+..+...  .+..+++.++
T Consensus        81 ------~~e~~~~aDvVi~avp~~~~~~~~~~i~~~l~~~~ivv~~st  122 (317)
T 4ezb_A           81 ------DVAGIACADVVLSLVVGAATKAVAASAAPHLSDEAVFIDLNS  122 (317)
T ss_dssp             ------SGGGGGGCSEEEECCCGGGHHHHHHHHGGGCCTTCEEEECCS
T ss_pred             ------HHHHHhcCCEEEEecCCHHHHHHHHHHHhhcCCCCEEEECCC
Confidence                  134567889999998776666555544332  3455666554

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=95.00  E-value=0.12  Score=49.12  Aligned_cols=110  Identities=17%  Similarity=0.145  Sum_probs=62.5

Q ss_pred             hCCcEEEEC-CcHHHHHHHHHHHHhCC-CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           11 KGAKVLMVG-AGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv-~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      .+++|+|.| .|+||..+++.|+..|- -+++++|...-. .+..  .                  +.++...-+++.+.
T Consensus         2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~-~~~~--~------------------~~~~~~~~~~~~~~   60 (336)
T 2hun_A            2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYG-SNPA--N------------------LKDLEDDPRYTFVK   60 (336)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTT-CCGG--G------------------GTTTTTCTTEEEEE
T ss_pred             CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCccc-Cchh--H------------------HhhhccCCceEEEE
Confidence            357899999 59999999999999984 367777743210 0100  0                  00111112455556


Q ss_pred             cCCCCCcchHhhhccCcEEEEccCCh-----------------HHHHHHHHHHHHCC--CcEEEecccCccc
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLDNL-----------------DARRHVNRLCLAAD--VPLVESGTTGFLG  141 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~-----------------~~r~~i~~~c~~~~--~p~i~~g~~G~~G  141 (410)
                      .++++...-...+.++|+||.+....                 ..-..+-+.|...+  ..+|..++.+.+|
T Consensus        61 ~Dl~d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg  132 (336)
T 2hun_A           61 GDVADYELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYG  132 (336)
T ss_dssp             CCTTCHHHHHHHHHTCSEEEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGC
T ss_pred             cCCCCHHHHHHHhhCCCEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHC
Confidence            66654433334567889999864321                 11233445566554  3677766655444

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=94.93  E-value=0.091  Score=50.18  Aligned_cols=72  Identities=19%  Similarity=0.250  Sum_probs=47.8

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC-CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC---CCCeEEEEc
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR---PQMSITAHH   88 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~n---p~v~i~~~~   88 (410)
                      .||.|+|+|.+|..++..|+..|. ++++++|.+.                   .|++..+..+....   +..++..  
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~-------------------~~~~~~~~~l~~~~~~~~~~~i~~--   59 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE-------------------DRAQAEAEDIAHAAPVSHGTRVWH--   59 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH-------------------HHHHHHHHHHTTSCCTTSCCEEEE--
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH-------------------HHHHHHHHhhhhhhhhcCCeEEEE--
Confidence            479999999999999999999985 5799998542                   12332233333332   2344543  


Q ss_pred             cCCCCCcchHhhhccCcEEEEccC
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                      ..       .+-++++|+||.+..
T Consensus        60 ~~-------~~a~~~aDvVIi~~~   76 (304)
T 2v6b_A           60 GG-------HSELADAQVVILTAG   76 (304)
T ss_dssp             EC-------GGGGTTCSEEEECC-
T ss_pred             CC-------HHHhCCCCEEEEcCC
Confidence            11       133789999999974

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=94.93  E-value=0.12  Score=48.37  Aligned_cols=102  Identities=19%  Similarity=0.270  Sum_probs=60.8

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        12 ~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      .++|+|.|+ |.+|..+++.|+..|. ++++++.+.-..             -...|++.+. .+.  .+.  ++....+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~~~~-------------~~~~~~~~~~-~l~--~~~--v~~v~~D   64 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGH-PTFLLVRESTAS-------------SNSEKAQLLE-SFK--ASG--ANIVHGS   64 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCCCTT-------------TTHHHHHHHH-HHH--TTT--CEEECCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC-CEEEEECCcccc-------------cCHHHHHHHH-HHH--hCC--CEEEEec
Confidence            468999996 9999999999999994 566655321100             0012332221 121  233  4445566


Q ss_pred             CCCCcchHhhhccCcEEEEccCCh--HHHHHHHHHHHHCC-CcEE
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLDNL--DARRHVNRLCLAAD-VPLV  132 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~Dn~--~~r~~i~~~c~~~~-~p~i  132 (410)
                      +++...-...++++|+||.+....  .....+-+.|.+.+ ++.+
T Consensus        65 ~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~  109 (308)
T 1qyc_A           65 IDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEVGTVKRF  109 (308)
T ss_dssp             TTCHHHHHHHHHTCSEEEECCCGGGSGGGHHHHHHHHHHCCCSEE
T ss_pred             cCCHHHHHHHHcCCCEEEECCcchhhhhHHHHHHHHHhcCCCceE
Confidence            655433345678899999976532  33455566777766 5433

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=94.91  E-value=0.068  Score=50.35  Aligned_cols=32  Identities=22%  Similarity=0.266  Sum_probs=27.0

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        12 ~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +++|+|.|+ |.||..+++.|+..| -+++++|.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r   34 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNN-WHAVGCGF   34 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEC-
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCC-CeEEEEcc
Confidence            578999996 999999999999999 45777763

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=94.90  E-value=0.12  Score=45.74  Aligned_cols=94  Identities=17%  Similarity=0.251  Sum_probs=57.7

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        13 ~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      ++|+|.|+ |++|..+++.|+..|. ++++++.+.                   .+..       .+.+.+  +....++
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~-------------------~~~~-------~~~~~~--~~~~~D~   51 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGH-EVTAIVRNA-------------------GKIT-------QTHKDI--NILQKDI   51 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCS-------------------HHHH-------HHCSSS--EEEECCG
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC-EEEEEEcCc-------------------hhhh-------hccCCC--eEEeccc
Confidence            47999995 9999999999999994 577776321                   1111       111333  4455566


Q ss_pred             CCCcchHhhhccCcEEEEccCC--------hHHHHHHHHHHHHCC-CcEEEeccc
Q 015243           92 KDPKFNVEFFKQFNVVLNGLDN--------LDARRHVNRLCLAAD-VPLVESGTT  137 (410)
Q Consensus        92 ~~~~~~~~~~~~~DvVi~a~Dn--------~~~r~~i~~~c~~~~-~p~i~~g~~  137 (410)
                      ++...  +.+.++|+||.+...        ...-..+-+.|.+.+ ..++..++.
T Consensus        52 ~d~~~--~~~~~~d~vi~~ag~~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           52 FDLTL--SDLSDQNVVVDAYGISPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             GGCCH--HHHTTCSEEEECCCSSTTTTTSHHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             cChhh--hhhcCCCEEEECCcCCccccchHHHHHHHHHHHHHhcCCceEEEEecc
Confidence            44332  667899999997532        123344555666653 455555443

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=94.90  E-value=0.22  Score=47.28  Aligned_cols=109  Identities=21%  Similarity=0.241  Sum_probs=63.2

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      +++|+|.| .|+||..+++.|+..|.. ++++|.+.-.               ..    ...+.+.+.. ...+..+..+
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~G~~-V~~~~r~~~~---------------~~----~~~~~~~~~~-~~~~~~~~~D   63 (341)
T 3enk_A            5 KGTILVTGGAGYIGSHTAVELLAHGYD-VVIADNLVNS---------------KR----EAIARIEKIT-GKTPAFHETD   63 (341)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECCCSSS---------------CT----HHHHHHHHHH-SCCCEEECCC
T ss_pred             CcEEEEecCCcHHHHHHHHHHHHCCCc-EEEEecCCcc---------------hH----HHHHHHHhhc-CCCceEEEee
Confidence            56899998 699999999999999964 6666532210               00    1122222221 1244556666


Q ss_pred             CCCCcchHhhhc--cCcEEEEccCC-----------------hHHHHHHHHHHHHCCC-cEEEecccCccc
Q 015243           91 VKDPKFNVEFFK--QFNVVLNGLDN-----------------LDARRHVNRLCLAADV-PLVESGTTGFLG  141 (410)
Q Consensus        91 i~~~~~~~~~~~--~~DvVi~a~Dn-----------------~~~r~~i~~~c~~~~~-p~i~~g~~G~~G  141 (410)
                      +++...-...++  +.|+||.+...                 ...-..+-+.|.+.+. .+|..++.+.+|
T Consensus        64 l~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g  134 (341)
T 3enk_A           64 VSDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATVYG  134 (341)
T ss_dssp             TTCHHHHHHHHHHSCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGBC
T ss_pred             cCCHHHHHHHHhccCCcEEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEecceEec
Confidence            655433345555  78999886421                 1222344556666664 577766655444

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=94.89  E-value=0.26  Score=45.95  Aligned_cols=100  Identities=17%  Similarity=0.236  Sum_probs=60.3

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCc--hHHHHHHHHHHhhCCCCeEEEEc
Q 015243           12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQ--SKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        12 ~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~--~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      .++|+|.|+ |.+|..+++.|+..|. ++++++.+.-              .-..  .|++.+. .+..  +.+  +...
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~--------------~~~~~~~~~~~~~-~l~~--~~v--~~v~   61 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN-PTYALVRKTI--------------TAANPETKEELID-NYQS--LGV--ILLE   61 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC-CEEEEECCSC--------------CSSCHHHHHHHHH-HHHH--TTC--EEEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC-cEEEEECCCc--------------ccCChHHHHHHHH-HHHh--CCC--EEEE
Confidence            468999996 9999999999999994 5666653310              0001  2333222 2222  333  4455


Q ss_pred             cCCCCCcchHhhhccCcEEEEccCC--hHHHHHHHHHHHHCC-CcE
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLDN--LDARRHVNRLCLAAD-VPL  131 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~Dn--~~~r~~i~~~c~~~~-~p~  131 (410)
                      .++++...-...++++|+||++...  ......+-+.|.+.+ ++.
T Consensus        62 ~D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~  107 (307)
T 2gas_A           62 GDINDHETLVKAIKQVDIVICAAGRLLIEDQVKIIKAIKEAGNVKK  107 (307)
T ss_dssp             CCTTCHHHHHHHHTTCSEEEECSSSSCGGGHHHHHHHHHHHCCCSE
T ss_pred             eCCCCHHHHHHHHhCCCEEEECCcccccccHHHHHHHHHhcCCceE
Confidence            6665543344667899999997643  334445556677665 543

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=94.88  E-value=0.12  Score=48.02  Aligned_cols=33  Identities=30%  Similarity=0.610  Sum_probs=29.7

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +.+ +|+|+|+|++|..+++.|...|+ +++++|.
T Consensus       115 l~~-~v~iiG~G~~g~~~a~~l~~~g~-~v~v~~r  147 (263)
T 2d5c_A          115 LKG-PALVLGAGGAGRAVAFALREAGL-EVWVWNR  147 (263)
T ss_dssp             CCS-CEEEECCSHHHHHHHHHHHHTTC-CEEEECS
T ss_pred             CCC-eEEEECCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence            456 99999999999999999999998 8998873

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=94.85  E-value=0.26  Score=46.15  Aligned_cols=100  Identities=18%  Similarity=0.195  Sum_probs=61.2

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        12 ~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      .++|+|.|+ |.+|..+++.|...|. ++++++.+.-              .-...|++.+.+ +.  .+.  ++....+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~--------------~~~~~~~~~~~~-~~--~~~--~~~~~~D   63 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPEV--------------VSNIDKVQMLLY-FK--QLG--AKLIEAS   63 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSCC--------------SSCHHHHHHHHH-HH--TTT--CEEECCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC-cEEEEECCCc--------------ccchhHHHHHHH-HH--hCC--eEEEeCC
Confidence            468999995 9999999999999994 5776653210              000113322211 21  233  4455666


Q ss_pred             CCCCcchHhhhccCcEEEEccC------ChHHHHHHHHHHHHCC-CcE
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLD------NLDARRHVNRLCLAAD-VPL  131 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~D------n~~~r~~i~~~c~~~~-~p~  131 (410)
                      +++...-...++++|+||.+..      +......+-+.|.+.+ +..
T Consensus        64 ~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~  111 (313)
T 1qyd_A           64 LDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKR  111 (313)
T ss_dssp             SSCHHHHHHHHTTCSEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCSE
T ss_pred             CCCHHHHHHHHhCCCEEEECCccccchhhHHHHHHHHHHHHhcCCCce
Confidence            6554333456789999999754      3444556667788776 543

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=94.84  E-value=0.11  Score=49.79  Aligned_cols=37  Identities=22%  Similarity=0.216  Sum_probs=31.2

Q ss_pred             HHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ..+.+++|+|.| .|.||+.+++.|...|. +++++|.+
T Consensus         5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   42 (357)
T 1rkx_A            5 SFWQGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLT   42 (357)
T ss_dssp             HHHTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             hhhCCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEeCC
Confidence            457789999999 69999999999999995 57777753

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=94.82  E-value=0.23  Score=46.86  Aligned_cols=99  Identities=16%  Similarity=0.202  Sum_probs=59.8

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCC-chHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVG-QSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        12 ~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG-~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      .++|+|.|+ |.+|..+++.|+..|. ++++++.+.-              +-. ..|.+.+.+ +..  +.  ++....
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~--------------~~~~~~~~~~l~~-~~~--~~--v~~v~~   63 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSH-PTFIYARPLT--------------PDSTPSSVQLREE-FRS--MG--VTIIEG   63 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTC-CEEEEECCCC--------------TTCCHHHHHHHHH-HHH--TT--CEEEEC
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCC-cEEEEECCcc--------------cccChHHHHHHHH-hhc--CC--cEEEEe
Confidence            468999995 9999999999999994 5777663210              000 113332221 221  33  344555


Q ss_pred             CCCCCcchHhhhccCcEEEEccCC--hHHHHHHHHHHHHCC-Cc
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLDN--LDARRHVNRLCLAAD-VP  130 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~Dn--~~~r~~i~~~c~~~~-~p  130 (410)
                      ++++...-...++++|+||.+...  ...-..+-+.|.+.+ ++
T Consensus        64 D~~d~~~l~~a~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~  107 (321)
T 3c1o_A           64 EMEEHEKMVSVLKQVDIVISALPFPMISSQIHIINAIKAAGNIK  107 (321)
T ss_dssp             CTTCHHHHHHHHTTCSEEEECCCGGGSGGGHHHHHHHHHHCCCC
T ss_pred             cCCCHHHHHHHHcCCCEEEECCCccchhhHHHHHHHHHHhCCcc
Confidence            665543344667899999997653  233455566677665 54

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=94.79  E-value=0.086  Score=50.05  Aligned_cols=32  Identities=34%  Similarity=0.636  Sum_probs=28.6

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .+|.||| +|.+|..+++.|+..|. +++++|.+
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~-~V~~~~~~   54 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGY-PISILDRE   54 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTT
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            5899999 99999999999999997 68888754

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=94.78  E-value=0.057  Score=49.23  Aligned_cols=81  Identities=17%  Similarity=0.320  Sum_probs=51.6

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .+.+++|+|.| .|+||.++++.|+..|. ++.++|.+.                   .+.+.+.+.+....+  ++..+
T Consensus         8 ~~~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~--~~~~~   65 (255)
T 1fmc_A            8 RLDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINA-------------------DAANHVVDEIQQLGG--QAFAC   65 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCH-------------------HHHHHHHHHHHHTTC--CEEEE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCH-------------------HHHHHHHHHHHHhCC--ceEEE
Confidence            36788899998 58999999999999996 577776321                   233444455555443  44555


Q ss_pred             ccCCCCCcchHhhh-------ccCcEEEEcc
Q 015243           88 HANVKDPKFNVEFF-------KQFNVVLNGL  111 (410)
Q Consensus        88 ~~~i~~~~~~~~~~-------~~~DvVi~a~  111 (410)
                      ..++++...-...+       .+.|+||++.
T Consensus        66 ~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~A   96 (255)
T 1fmc_A           66 RCDITSEQELSALADFAISKLGKVDILVNNA   96 (255)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSSCCEEEECC
T ss_pred             EcCCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            56665432222333       3778888753

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=94.76  E-value=0.12  Score=49.25  Aligned_cols=75  Identities=20%  Similarity=0.308  Sum_probs=49.2

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCC------CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGF------QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM   82 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv------~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v   82 (410)
                      +.+++|+|.| .|+||+.+++.|+..|.      .+++++|.+.-.   ..        .              .  ...
T Consensus        12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~---~~--------~--------------~--~~~   64 (342)
T 2hrz_A           12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPE---AP--------A--------------G--FSG   64 (342)
T ss_dssp             CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCC---CC--------T--------------T--CCS
T ss_pred             ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCc---cc--------c--------------c--cCC
Confidence            4567899998 69999999999999983      467777743210   00        0              0  123


Q ss_pred             eEEEEccCCCCCcchHhhh-ccCcEEEEcc
Q 015243           83 SITAHHANVKDPKFNVEFF-KQFNVVLNGL  111 (410)
Q Consensus        83 ~i~~~~~~i~~~~~~~~~~-~~~DvVi~a~  111 (410)
                      +++.+..++++...-...+ .++|+||.+.
T Consensus        65 ~~~~~~~Dl~d~~~~~~~~~~~~d~vih~A   94 (342)
T 2hrz_A           65 AVDARAADLSAPGEAEKLVEARPDVIFHLA   94 (342)
T ss_dssp             EEEEEECCTTSTTHHHHHHHTCCSEEEECC
T ss_pred             ceeEEEcCCCCHHHHHHHHhcCCCEEEECC
Confidence            5666666775544334455 4789999864

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=94.74  E-value=0.12  Score=49.92  Aligned_cols=34  Identities=26%  Similarity=0.493  Sum_probs=29.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ..||.|+|+|.+|..++..|+..|...+.|+|-|
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~   37 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIV   37 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            3589999999999999999999998459999844

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=94.73  E-value=0.1  Score=48.73  Aligned_cols=81  Identities=21%  Similarity=0.329  Sum_probs=52.3

Q ss_pred             HHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .+.+++|+|.|+ ||||.++++.|+..|. ++.++|.+.                   .+.+.+++.+.+.. ..++..+
T Consensus        25 ~~~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~-~~~~~~~   83 (286)
T 1xu9_A           25 MLQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSK-------------------ETLQKVVSHCLELG-AASAHYI   83 (286)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHHT-CSEEEEE
T ss_pred             hcCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHHHHHhC-CCceEEE
Confidence            367788999985 8999999999999996 588876431                   23444445555443 2356666


Q ss_pred             ccCCCCCcchHhhh-------ccCcEEEEc
Q 015243           88 HANVKDPKFNVEFF-------KQFNVVLNG  110 (410)
Q Consensus        88 ~~~i~~~~~~~~~~-------~~~DvVi~a  110 (410)
                      ..++++......++       .+.|+||++
T Consensus        84 ~~Dl~d~~~v~~~~~~~~~~~g~iD~li~n  113 (286)
T 1xu9_A           84 AGTMEDMTFAEQFVAQAGKLMGGLDMLILN  113 (286)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHTSCSEEEEC
T ss_pred             eCCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            66665432222222       367888875

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=94.73  E-value=0.12  Score=47.66  Aligned_cols=82  Identities=13%  Similarity=0.272  Sum_probs=50.9

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      +.+++++|.| .||||.++++.|+..|. ++.++|.+.                   .+.+.+++.+....+..++..+.
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~   64 (260)
T 2z1n_A            5 IQGKLAVVTAGSSGLGFASALELARNGA-RLLLFSRNR-------------------EKLEAAASRIASLVSGAQVDIVA   64 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHHSTTCCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcCCCCeEEEEE
Confidence            5577889997 68999999999999996 577776331                   23344444444433333566666


Q ss_pred             cCCCCCcchHhhhc------cCcEEEEcc
Q 015243           89 ANVKDPKFNVEFFK------QFNVVLNGL  111 (410)
Q Consensus        89 ~~i~~~~~~~~~~~------~~DvVi~a~  111 (410)
                      .++++...-..+++      +.|+||++.
T Consensus        65 ~D~~~~~~v~~~~~~~~~~~gid~lv~~A   93 (260)
T 2z1n_A           65 GDIREPGDIDRLFEKARDLGGADILVYST   93 (260)
T ss_dssp             CCTTCHHHHHHHHHHHHHTTCCSEEEECC
T ss_pred             ccCCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence            66654322223332      378877753

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=94.72  E-value=0.11  Score=49.44  Aligned_cols=33  Identities=21%  Similarity=0.310  Sum_probs=28.7

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ...+|.|||+|.+|..++++|+..|. ++++.|.
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G~-~V~~~dr   40 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQGK-RVAIWNR   40 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTTC-CEEEECS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            45789999999999999999999997 4777763

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=94.69  E-value=0.14  Score=49.27  Aligned_cols=74  Identities=19%  Similarity=0.267  Sum_probs=51.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCC-CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC---CCCeEEEE
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR---PQMSITAH   87 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~n---p~v~i~~~   87 (410)
                      +.||.|+|+|.+|..++..|+..|. .+|.|+|-                   ...|++..+.-+....   +.+++.+ 
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di-------------------~~~~~~g~~~dl~~~~~~~~~~~v~~-   64 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDV-------------------VKDRTKGDALDLEDAQAFTAPKKIYS-   64 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS-------------------SHHHHHHHHHHHHGGGGGSCCCEEEE-
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeC-------------------CchHHHHHHHHHHHHHHhcCCeEEEE-
Confidence            3689999999999999999999885 57888873                   2235554444444432   4455554 


Q ss_pred             ccCCCCCcchHhhhccCcEEEEccCC
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGLDN  113 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn  113 (410)
                       +.       .+-++++|+||.+..-
T Consensus        65 -~~-------~~a~~~aDvVii~ag~   82 (318)
T 1ez4_A           65 -GE-------YSDCKDADLVVITAGA   82 (318)
T ss_dssp             -CC-------GGGGTTCSEEEECCCC
T ss_pred             -CC-------HHHhCCCCEEEECCCC
Confidence             11       2337899999998643

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=94.68  E-value=0.068  Score=52.12  Aligned_cols=77  Identities=16%  Similarity=0.184  Sum_probs=51.3

Q ss_pred             HhCCcEEEECC-cHHHHHHHHHHHHhCC-CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhh-CCCCeEEE
Q 015243           10 IKGAKVLMVGA-GGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKF-RPQMSITA   86 (410)
Q Consensus        10 L~~~~VlvvG~-GgiG~ev~knLa~~Gv-~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~-np~v~i~~   86 (410)
                      +.+.||.|+|+ |.+|+.++..|+..|. .++.|+|-+                   ..|++..+.-|... .|..++..
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~-------------------~~k~~g~a~DL~~~~~~~~~i~~   66 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF-------------------AVGLEGVAEEIRHCGFEGLNLTF   66 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC-------------------HHHHHHHHHHHHHHCCTTCCCEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC-------------------chhHHHHHHhhhhCcCCCCceEE
Confidence            45789999997 9999999999999997 579998842                   23555444444442 23223322


Q ss_pred             EccCCCCCcchHhhhccCcEEEEccC
Q 015243           87 HHANVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                      .     .  ...+-++++|+||.+..
T Consensus        67 t-----~--d~~~al~dADvVvitaG   85 (343)
T 3fi9_A           67 T-----S--DIKEALTDAKYIVSSGG   85 (343)
T ss_dssp             E-----S--CHHHHHTTEEEEEECCC
T ss_pred             c-----C--CHHHHhCCCCEEEEccC
Confidence            1     1  12244789999998754

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=94.65  E-value=0.084  Score=48.88  Aligned_cols=82  Identities=15%  Similarity=0.238  Sum_probs=54.4

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .|.+++++|.| .||||.++++.|+..|. ++.++|.+                   ..+.+.+.+.+++.. ..++..+
T Consensus         7 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~-~~~~~~~   65 (262)
T 3pk0_A            7 DLQGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRS-------------------TADIDACVADLDQLG-SGKVIGV   65 (262)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHTTS-SSCEEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhhC-CCcEEEE
Confidence            46778888887 68999999999999997 58887743                   234455555555543 2356667


Q ss_pred             ccCCCCCcchHhhh-------ccCcEEEEcc
Q 015243           88 HANVKDPKFNVEFF-------KQFNVVLNGL  111 (410)
Q Consensus        88 ~~~i~~~~~~~~~~-------~~~DvVi~a~  111 (410)
                      ..++++...-..++       .+.|++|++.
T Consensus        66 ~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnA   96 (262)
T 3pk0_A           66 QTDVSDRAQCDALAGRAVEEFGGIDVVCANA   96 (262)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred             EcCCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            67775433222232       3678888853

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=94.61  E-value=0.14  Score=47.97  Aligned_cols=37  Identities=27%  Similarity=0.431  Sum_probs=29.3

Q ss_pred             HHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243            9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus         9 ~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      .++.++|+|.|+ |.+|+.+++.|...|. +++++|...
T Consensus         4 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   41 (321)
T 3vps_A            4 NTLKHRILITGGAGFIGGHLARALVASGE-EVTVLDDLR   41 (321)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTC-CEEEECCCS
T ss_pred             ccCCCeEEEECCCChHHHHHHHHHHHCCC-EEEEEecCC
Confidence            456789999997 9999999999999996 577777544

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=94.56  E-value=0.17  Score=48.13  Aligned_cols=107  Identities=15%  Similarity=0.186  Sum_probs=62.3

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      ++|+|.| .|.||..+++.|+..|. +++++|...       |.           ......+.+.. .+  +++.+..++
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~-------~~-----------~~~~~~~~l~~-~~--~~~~~~~Dl   59 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFALSQGI-DLIVFDNLS-------RK-----------GATDNLHWLSS-LG--NFEFVHGDI   59 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCC-------ST-----------THHHHHHHHHT-TC--CCEEEECCT
T ss_pred             cEEEEeCCCchhHHHHHHHHHhCCC-EEEEEeCCC-------cc-----------Cchhhhhhhcc-CC--ceEEEEcCC
Confidence            4799998 69999999999999985 577776321       00           01111222322 12  344555666


Q ss_pred             CCCcchHhhhcc--CcEEEEccCCh-----------------HHHHHHHHHHHHCCCc--EEEecccCccc
Q 015243           92 KDPKFNVEFFKQ--FNVVLNGLDNL-----------------DARRHVNRLCLAADVP--LVESGTTGFLG  141 (410)
Q Consensus        92 ~~~~~~~~~~~~--~DvVi~a~Dn~-----------------~~r~~i~~~c~~~~~p--~i~~g~~G~~G  141 (410)
                      ++...-...+++  +|+||.+....                 ..-..+-+.|...++.  +|..++.+.+|
T Consensus        60 ~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~g  130 (347)
T 1orr_A           60 RNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYG  130 (347)
T ss_dssp             TCHHHHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGT
T ss_pred             CCHHHHHHHHhccCCCEEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHhC
Confidence            544333455666  99999864321                 1123445566666653  77776655444

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=94.54  E-value=0.13  Score=47.81  Aligned_cols=40  Identities=25%  Similarity=0.320  Sum_probs=27.5

Q ss_pred             HHHHHHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            4 ERQLEAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         4 ~e~q~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +..+.++.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         3 ~~~~~~~~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r   43 (276)
T 1mxh_A            3 ETSHEASECPAAVITGGARRIGHSIAVRLHQQGF-RVVVHYR   43 (276)
T ss_dssp             --------CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             chhhhccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            3445667888888887 78999999999999996 5777763

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=94.53  E-value=0.19  Score=48.03  Aligned_cols=73  Identities=16%  Similarity=0.195  Sum_probs=48.8

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh----hCCCCeEEEEc
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK----FRPQMSITAHH   88 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~----~np~v~i~~~~   88 (410)
                      .||.|+|+|.+|..++..|+..|.-.+.|+|-+.                   .|++..+..+.+    .....++....
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~-------------------~~~~g~~~dl~~~~~~~~~~~~i~~t~   63 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE-------------------GVPQGKALDLYEASPIEGFDVRVTGTN   63 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS-------------------SHHHHHHHHHHTTHHHHTCCCCEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc-------------------cHHHHHHHhHHHhHhhcCCCeEEEECC
Confidence            6899999999999999999999973499998542                   122222222222    33445565532


Q ss_pred             cCCCCCcchHhhhccCcEEEEccC
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                      +      +  +-++++|+||.+..
T Consensus        64 d------~--~a~~~aD~Vi~a~g   79 (309)
T 1ur5_A           64 N------Y--ADTANSDVIVVTSG   79 (309)
T ss_dssp             C------G--GGGTTCSEEEECCC
T ss_pred             C------H--HHHCCCCEEEEcCC
Confidence            1      1  33689999999864

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=94.53  E-value=0.24  Score=47.00  Aligned_cols=108  Identities=16%  Similarity=0.290  Sum_probs=62.4

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHh---CC--CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEE
Q 015243           13 AKVLMVG-AGGIGCELLKTLALS---GF--QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~---Gv--~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~   86 (410)
                      ++|+|.| .|.||+.+++.|+..   |+  .+++++|...-. .+.  .                  .+..+...-+++.
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~-~~~--~------------------~~~~~~~~~~~~~   59 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYA-GNR--A------------------NLAPVDADPRLRF   59 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTT-CCG--G------------------GGGGGTTCTTEEE
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCcc-Cch--h------------------hhhhcccCCCeEE
Confidence            3799998 699999999999996   53  468877743210 000  0                  0011111124555


Q ss_pred             EccCCCCCcchHhhhccCcEEEEccCC-----------------hHHHHHHHHHHHHCCC-cEEEecccCccc
Q 015243           87 HHANVKDPKFNVEFFKQFNVVLNGLDN-----------------LDARRHVNRLCLAADV-PLVESGTTGFLG  141 (410)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~DvVi~a~Dn-----------------~~~r~~i~~~c~~~~~-p~i~~g~~G~~G  141 (410)
                      +..++++...-...+.++|+||.+...                 ...-..+-+.|...++ .+|..++.+.+|
T Consensus        60 ~~~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS~~vyg  132 (337)
T 1r6d_A           60 VHGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYG  132 (337)
T ss_dssp             EECCTTCHHHHHHHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGC
T ss_pred             EEcCCCCHHHHHHHhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHhC
Confidence            566665443333556788999986431                 1122345566777765 677766655444

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=94.51  E-value=0.11  Score=49.90  Aligned_cols=35  Identities=31%  Similarity=0.428  Sum_probs=31.5

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +..+|.|+|+|.+|+.++..|+..|.++++|+|.+
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            45789999999999999999999999889999854

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=94.51  E-value=0.068  Score=49.85  Aligned_cols=93  Identities=19%  Similarity=0.136  Sum_probs=56.4

Q ss_pred             HHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEE
Q 015243            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (410)
Q Consensus         8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~   86 (410)
                      ..|.+++|+|.| .||||.++++.|+..|.. +.++|.+.-...    .-   ...-...+.+.+.+.+....  .++..
T Consensus         6 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~--~~~~~   75 (287)
T 3pxx_A            6 GRVQDKVVLVTGGARGQGRSHAVKLAEEGAD-IILFDICHDIET----NE---YPLATSRDLEEAGLEVEKTG--RKAYT   75 (287)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSCCTT----SC---SCCCCHHHHHHHHHHHHHTT--SCEEE
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCe-EEEEcccccccc----cc---cchhhhHHHHHHHHHHHhcC--CceEE
Confidence            457888999998 679999999999999965 888875421111    00   00012334455555555544  35666


Q ss_pred             EccCCCCCcchHhhh-------ccCcEEEEc
Q 015243           87 HHANVKDPKFNVEFF-------KQFNVVLNG  110 (410)
Q Consensus        87 ~~~~i~~~~~~~~~~-------~~~DvVi~a  110 (410)
                      +..++++...-..++       .+.|++|++
T Consensus        76 ~~~D~~~~~~v~~~~~~~~~~~g~id~lv~n  106 (287)
T 3pxx_A           76 AEVDVRDRAAVSRELANAVAEFGKLDVVVAN  106 (287)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             EEccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            666775432222222       367888875

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=94.49  E-value=0.07  Score=49.33  Aligned_cols=82  Identities=16%  Similarity=0.334  Sum_probs=54.1

Q ss_pred             HHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEE
Q 015243            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (410)
Q Consensus         8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~   86 (410)
                      ..+.+++|+|.| .||||.++++.|+..|.. +.++|.+                   ..+.+.+.+.+.+..+  ++..
T Consensus        25 ~~l~~k~vlITGas~gIG~~la~~l~~~G~~-V~~~~r~-------------------~~~~~~~~~~~~~~~~--~~~~   82 (262)
T 3rkr_A           25 SSLSGQVAVVTGASRGIGAAIARKLGSLGAR-VVLTARD-------------------VEKLRAVEREIVAAGG--EAES   82 (262)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESC-------------------HHHHHHHHHHHHHTTC--EEEE
T ss_pred             hccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEECC-------------------HHHHHHHHHHHHHhCC--ceeE
Confidence            346678899988 689999999999999975 7777642                   2345555666665543  5666


Q ss_pred             EccCCCCCcchHhh-------hccCcEEEEcc
Q 015243           87 HHANVKDPKFNVEF-------FKQFNVVLNGL  111 (410)
Q Consensus        87 ~~~~i~~~~~~~~~-------~~~~DvVi~a~  111 (410)
                      +..++++......+       +.+.|+||++.
T Consensus        83 ~~~D~~~~~~v~~~~~~~~~~~g~id~lv~~A  114 (262)
T 3rkr_A           83 HACDLSHSDAIAAFATGVLAAHGRCDVLVNNA  114 (262)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred             EEecCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            66676543222222       23578888753

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=94.48  E-value=0.093  Score=53.54  Aligned_cols=36  Identities=17%  Similarity=0.361  Sum_probs=28.9

Q ss_pred             HHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         8 ~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ..+.+++|.|||+|.+|+.++.+|+..|. ++++.|.
T Consensus        11 ~~~~~~~IgvIGlG~MG~~lA~~La~~G~-~V~v~~r   46 (480)
T 2zyd_A           11 HHMSKQQIGVVGMAVMGRNLALNIESRGY-TVSIFNR   46 (480)
T ss_dssp             ----CBSEEEECCSHHHHHHHHHHHTTTC-CEEEECS
T ss_pred             cccCCCeEEEEccHHHHHHHHHHHHhCCC-eEEEEeC
Confidence            45778999999999999999999999997 4777763

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=94.47  E-value=0.26  Score=46.75  Aligned_cols=102  Identities=18%  Similarity=0.280  Sum_probs=61.6

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHh-CCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           13 AKVLMVGA-GGIGCELLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        13 ~~VlvvG~-GgiG~ev~knLa~~-Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      ++|+|.|+ |.||..+++.|... |. +++++|...-   .+..  +                     ...-+++.+..+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~---~~~~--~---------------------~~~~~~~~~~~D   53 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHY-EVYGLDIGSD---AISR--F---------------------LNHPHFHFVEGD   53 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC-EEEEEESCCG---GGGG--G---------------------TTCTTEEEEECC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCC-EEEEEeCCcc---hHHH--h---------------------hcCCCeEEEecc
Confidence            47999996 99999999999998 64 5777775321   1100  0                     001135555666


Q ss_pred             CCCC-cchHhhhccCcEEEEccC--Ch---------------HHHHHHHHHHHHCCCcEEEecccCccc
Q 015243           91 VKDP-KFNVEFFKQFNVVLNGLD--NL---------------DARRHVNRLCLAADVPLVESGTTGFLG  141 (410)
Q Consensus        91 i~~~-~~~~~~~~~~DvVi~a~D--n~---------------~~r~~i~~~c~~~~~p~i~~g~~G~~G  141 (410)
                      +++. ......++++|+||.+..  ..               ..-..+-+.|.+.+..+|..++.+.+|
T Consensus        54 ~~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~SS~~v~g  122 (345)
T 2bll_A           54 ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYG  122 (345)
T ss_dssp             TTTCSHHHHHHHHHCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGB
T ss_pred             ccCcHHHHHhhccCCCEEEEcccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEecHHHcC
Confidence            6542 223345678899998532  11               112344556777777788877765554

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=94.47  E-value=0.077  Score=50.67  Aligned_cols=35  Identities=20%  Similarity=0.312  Sum_probs=30.0

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      ...+|.|||+|.+|+.++++|+..|. .++++|.+.
T Consensus        20 ~m~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~   54 (310)
T 3doj_A           20 HMMEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTL   54 (310)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSG
T ss_pred             cCCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            34689999999999999999999997 688887543

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=94.43  E-value=0.14  Score=45.49  Aligned_cols=95  Identities=19%  Similarity=0.161  Sum_probs=55.0

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      .+|+|+| +|.+|+.+++.|+..|. +++++|.+.                   .+.+.+.+.+...-+...+..  .  
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~--~--   56 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGH-EIVVGSRRE-------------------EKAEAKAAEYRRIAGDASITG--M--   56 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSH-------------------HHHHHHHHHHHHHHSSCCEEE--E--
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHhccccccCCCCh--h--
Confidence            3799999 99999999999999996 588877431                   122222222111101011221  1  


Q ss_pred             CCCcchHhhhccCcEEEEccCChHHHHHHHHHHHH-CCCcEEEec
Q 015243           92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA-ADVPLVESG  135 (410)
Q Consensus        92 ~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~-~~~p~i~~g  135 (410)
                          ...+.++++|+||.|+.....+..+.++... .+..+++..
T Consensus        57 ----~~~~~~~~~D~Vi~~~~~~~~~~~~~~l~~~~~~~~vi~~~   97 (212)
T 1jay_A           57 ----KNEDAAEACDIAVLTIPWEHAIDTARDLKNILREKIVVSPL   97 (212)
T ss_dssp             ----EHHHHHHHCSEEEECSCHHHHHHHHHHTHHHHTTSEEEECC
T ss_pred             ----hHHHHHhcCCEEEEeCChhhHHHHHHHHHHHcCCCEEEEcC
Confidence                1234567899999998765555444433211 255566554

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=94.40  E-value=0.13  Score=46.70  Aligned_cols=37  Identities=30%  Similarity=0.529  Sum_probs=30.6

Q ss_pred             HHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ..|++++++|.| .||||.++++.|+..|.. +.++|.+
T Consensus        10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G~~-V~~~~r~   47 (247)
T 3i1j_A           10 ELLKGRVILVTGAARGIGAAAARAYAAHGAS-VVLLGRT   47 (247)
T ss_dssp             TTTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             ccCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEecC
Confidence            357788899998 589999999999999974 7787743

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=94.38  E-value=0.17  Score=48.84  Aligned_cols=73  Identities=25%  Similarity=0.307  Sum_probs=50.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCC-CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC---CCCeEEEE
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR---PQMSITAH   87 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~n---p~v~i~~~   87 (410)
                      ..||.|+|+|.+|..++..|+..|. .+|.|+|-                   ...|++..+.-+.+..   +.+++.+ 
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di-------------------~~~~~~g~~~dl~~~~~~~~~~~i~~-   68 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDI-------------------FKDKTKGDAIDLSNALPFTSPKKIYS-   68 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS-------------------CHHHHHHHHHHHHTTGGGSCCCEEEE-
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeC-------------------CchHhHHHHHHHHHHHHhcCCeEEEE-
Confidence            4689999999999999999998885 56888873                   2234544344444332   4455654 


Q ss_pred             ccCCCCCcchHhhhccCcEEEEccC
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                       +.       .+-++++|+||.+..
T Consensus        69 -~~-------~~a~~~aDvVii~ag   85 (326)
T 2zqz_A           69 -AE-------YSDAKDADLVVITAG   85 (326)
T ss_dssp             -CC-------GGGGGGCSEEEECCC
T ss_pred             -CC-------HHHhCCCCEEEEcCC
Confidence             11       233789999999864

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=94.38  E-value=0.15  Score=48.95  Aligned_cols=33  Identities=33%  Similarity=0.654  Sum_probs=28.6

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC-CcEEEEeCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~D   45 (410)
                      ++|.|+|+|.+|+.++..|+..|. ++++++|.+
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~   34 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD   34 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            479999999999999999999995 468888743

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=94.37  E-value=0.16  Score=47.29  Aligned_cols=83  Identities=14%  Similarity=0.208  Sum_probs=54.7

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC-CeEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ-MSITA   86 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~-v~i~~   86 (410)
                      .|.+++++|.| .||||.++++.|+..|.. +.++|.+                   ..+.+.+++.+++..+. .++..
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~   67 (281)
T 3svt_A            8 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAS-VMIVGRN-------------------PDKLAGAVQELEALGANGGAIRY   67 (281)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESC-------------------HHHHHHHHHHHHTTCCSSCEEEE
T ss_pred             CcCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCC-------------------HHHHHHHHHHHHHhCCCCceEEE
Confidence            56788899997 689999999999999974 7777743                   23445555666655432 26666


Q ss_pred             EccCCCCCcchHhh-------hccCcEEEEcc
Q 015243           87 HHANVKDPKFNVEF-------FKQFNVVLNGL  111 (410)
Q Consensus        87 ~~~~i~~~~~~~~~-------~~~~DvVi~a~  111 (410)
                      +..++++...-..+       +.+.|++|++.
T Consensus        68 ~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA   99 (281)
T 3svt_A           68 EPTDITNEDETARAVDAVTAWHGRLHGVVHCA   99 (281)
T ss_dssp             EECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EeCCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            66677543222222       23568888743

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=94.35  E-value=0.13  Score=47.99  Aligned_cols=82  Identities=17%  Similarity=0.248  Sum_probs=50.2

Q ss_pred             HHHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEE
Q 015243            7 LEAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSIT   85 (410)
Q Consensus         7 q~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~   85 (410)
                      +..+++++++|.| .||||.++++.|+..|.. +.++|.+                   ..+.+.+.+.+++..+  ++.
T Consensus        19 ~~m~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~-------------------~~~~~~~~~~l~~~~~--~~~   76 (279)
T 3sju_A           19 SHMSRPQTAFVTGVSSGIGLAVARTLAARGIA-VYGCARD-------------------AKNVSAAVDGLRAAGH--DVD   76 (279)
T ss_dssp             ------CEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESC-------------------HHHHHHHHHHHHTTTC--CEE
T ss_pred             ccccCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCC-------------------HHHHHHHHHHHHhcCC--cEE
Confidence            4456677888888 689999999999999975 7777633                   2345555666665543  455


Q ss_pred             EEccCCCCCcchHhh-------hccCcEEEEc
Q 015243           86 AHHANVKDPKFNVEF-------FKQFNVVLNG  110 (410)
Q Consensus        86 ~~~~~i~~~~~~~~~-------~~~~DvVi~a  110 (410)
                      .+..++++...-..+       +.+.|++|++
T Consensus        77 ~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~n  108 (279)
T 3sju_A           77 GSSCDVTSTDEVHAAVAAAVERFGPIGILVNS  108 (279)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHCSCCEEEEC
T ss_pred             EEECCCCCHHHHHHHHHHHHHHcCCCcEEEEC
Confidence            666666543222222       2367888875

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=94.33  E-value=0.17  Score=49.05  Aligned_cols=34  Identities=15%  Similarity=0.395  Sum_probs=30.3

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCC-CcEEEEeC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDM   44 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~   44 (410)
                      ...||.|+|+|.+|+.++..|+..|+ +.+.|+|-
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di   54 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDV   54 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEEC
Confidence            35789999999999999999999997 67999883

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=94.33  E-value=0.11  Score=47.85  Aligned_cols=80  Identities=21%  Similarity=0.338  Sum_probs=53.1

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .|.+++++|.| .||||.++++.|+..|.. +.++|.+                   ..+.+.+++.+++..+  ++..+
T Consensus         9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~-------------------~~~~~~~~~~~~~~~~--~~~~~   66 (256)
T 3gaf_A            9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGAS-VVVTDLK-------------------SEGAEAVAAAIRQAGG--KAIGL   66 (256)
T ss_dssp             CCTTCEEEECSCSSHHHHHHHHHHHHHTCE-EEEEESS-------------------HHHHHHHHHHHHHTTC--CEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCC-------------------HHHHHHHHHHHHhcCC--cEEEE
Confidence            36778888887 689999999999999976 7777632                   2345556666665543  45566


Q ss_pred             ccCCCCCcchHhhh-------ccCcEEEEc
Q 015243           88 HANVKDPKFNVEFF-------KQFNVVLNG  110 (410)
Q Consensus        88 ~~~i~~~~~~~~~~-------~~~DvVi~a  110 (410)
                      ..++++...-..++       .+.|++|++
T Consensus        67 ~~Dv~d~~~v~~~~~~~~~~~g~id~lv~n   96 (256)
T 3gaf_A           67 ECNVTDEQHREAVIKAALDQFGKITVLVNN   96 (256)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            66665432222222       367888875

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=94.32  E-value=0.083  Score=50.59  Aligned_cols=82  Identities=17%  Similarity=0.212  Sum_probs=54.8

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      +.+++|+|.| .||||.++++.|+..|.. +.++|.+                   ..+.+.+.+.+....+..++..+.
T Consensus         6 l~~k~vlVTGas~gIG~~la~~l~~~G~~-Vv~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~   65 (319)
T 3ioy_A            6 FAGRTAFVTGGANGVGIGLVRQLLNQGCK-VAIADIR-------------------QDSIDKALATLEAEGSGPEVMGVQ   65 (319)
T ss_dssp             CTTCEEEEETTTSTHHHHHHHHHHHTTCE-EEEEESC-------------------HHHHHHHHHHHHHHTCGGGEEEEE
T ss_pred             CCCCEEEEcCCchHHHHHHHHHHHHCCCE-EEEEECC-------------------HHHHHHHHHHHHhcCCCCeEEEEE
Confidence            5677899998 589999999999999974 7777643                   235555566666665555666676


Q ss_pred             cCCCCCcchHhhh-------ccCcEEEEcc
Q 015243           89 ANVKDPKFNVEFF-------KQFNVVLNGL  111 (410)
Q Consensus        89 ~~i~~~~~~~~~~-------~~~DvVi~a~  111 (410)
                      .++++...-..++       .+.|+||++.
T Consensus        66 ~Dl~~~~~v~~~~~~~~~~~g~id~lv~nA   95 (319)
T 3ioy_A           66 LDVASREGFKMAADEVEARFGPVSILCNNA   95 (319)
T ss_dssp             CCTTCHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence            6775432222222       3567877753

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=94.31  E-value=0.16  Score=46.42  Aligned_cols=80  Identities=16%  Similarity=0.225  Sum_probs=50.4

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      +.+++|+|.| .|+||.++++.|+..|. ++.++|.+.                   .+.+.+.+.+++..+  ++..+.
T Consensus        11 l~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~--~~~~~~   68 (260)
T 3awd_A           11 LDNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDE-------------------AMATKAVEDLRMEGH--DVSSVV   68 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTTC--CEEEEE
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcCC--ceEEEE
Confidence            5678899997 68999999999999996 587776331                   233344455544433  455566


Q ss_pred             cCCCCCcchHhhh-------ccCcEEEEcc
Q 015243           89 ANVKDPKFNVEFF-------KQFNVVLNGL  111 (410)
Q Consensus        89 ~~i~~~~~~~~~~-------~~~DvVi~a~  111 (410)
                      .++++...-...+       .+.|+||++.
T Consensus        69 ~D~~~~~~~~~~~~~~~~~~~~id~vi~~A   98 (260)
T 3awd_A           69 MDVTNTESVQNAVRSVHEQEGRVDILVACA   98 (260)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             ecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            6665432222222       3578887753

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=94.30  E-value=0.1  Score=48.71  Aligned_cols=86  Identities=19%  Similarity=0.173  Sum_probs=52.8

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~   92 (410)
                      ++|.|||+|.+|+.+++.|+. |. +++++|.+                   ..|++.+++.      ++.+.  .    
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~-~V~~~~~~-------------------~~~~~~~~~~------g~~~~--~----   48 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RF-PTLVWNRT-------------------FEKALRHQEE------FGSEA--V----   48 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TS-CEEEECSS-------------------THHHHHHHHH------HCCEE--C----
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CC-eEEEEeCC-------------------HHHHHHHHHC------CCccc--C----
Confidence            479999999999999999999 86 47777632                   1233333322      11111  1    


Q ss_pred             CCcchHhhhccCcEEEEccCChH-HHHHHHHHHH--HCCCcEEEec
Q 015243           93 DPKFNVEFFKQFNVVLNGLDNLD-ARRHVNRLCL--AADVPLVESG  135 (410)
Q Consensus        93 ~~~~~~~~~~~~DvVi~a~Dn~~-~r~~i~~~c~--~~~~p~i~~g  135 (410)
                          ..+.+.++|+||.|+.+.. .+..+..+..  ..+..+++.+
T Consensus        49 ----~~~~~~~~D~vi~~v~~~~~~~~v~~~l~~~l~~~~~vv~~s   90 (289)
T 2cvz_A           49 ----PLERVAEARVIFTCLPTTREVYEVAEALYPYLREGTYWVDAT   90 (289)
T ss_dssp             ----CGGGGGGCSEEEECCSSHHHHHHHHHHHTTTCCTTEEEEECS
T ss_pred             ----HHHHHhCCCEEEEeCCChHHHHHHHHHHHhhCCCCCEEEECC
Confidence                1244678999999998765 4444444322  2244566554

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=94.29  E-value=0.074  Score=49.32  Aligned_cols=98  Identities=17%  Similarity=0.185  Sum_probs=61.1

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHh--CCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           13 AKVLMVGA-GGIGCELLKTLALS--GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        13 ~~VlvvG~-GgiG~ev~knLa~~--Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      ++|+|.|+ |.+|+.+++.|...  |. ++++++.+.   +                +...    +..  +.  ++....
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~---~----------------~~~~----l~~--~~--~~~~~~   52 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPAS-QIIAIVRNV---E----------------KAST----LAD--QG--VEVRHG   52 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGG-GEEEEESCT---T----------------TTHH----HHH--TT--CEEEEC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCC-eEEEEEcCH---H----------------HHhH----Hhh--cC--CeEEEe
Confidence            47999996 99999999999988  74 577776421   0                1111    111  22  334455


Q ss_pred             CCCCCcchHhhhccCcEEEEccC-------ChHHHHHHHHHHHHCCC-cEEEecccC
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLD-------NLDARRHVNRLCLAADV-PLVESGTTG  138 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~D-------n~~~r~~i~~~c~~~~~-p~i~~g~~G  138 (410)
                      ++++...-...++++|+||.+..       |...-..+-+.|.+.++ .++..++.+
T Consensus        53 D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~  109 (287)
T 2jl1_A           53 DYNQPESLQKAFAGVSKLLFISGPHYDNTLLIVQHANVVKAARDAGVKHIAYTGYAF  109 (287)
T ss_dssp             CTTCHHHHHHHTTTCSEEEECCCCCSCHHHHHHHHHHHHHHHHHTTCSEEEEEEETT
T ss_pred             ccCCHHHHHHHHhcCCEEEEcCCCCcCchHHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence            66544333456778999998653       33444556677777776 566666544

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=94.27  E-value=0.17  Score=46.13  Aligned_cols=33  Identities=33%  Similarity=0.439  Sum_probs=27.5

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .||.|||+|.+|..++++|...|+.-..+.|.+
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~   33 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVR   33 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecC
Confidence            379999999999999999998787544677755

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=94.27  E-value=0.18  Score=48.48  Aligned_cols=74  Identities=14%  Similarity=0.212  Sum_probs=49.7

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC-CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh----hCCCCeEEEE
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK----FRPQMSITAH   87 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~----~np~v~i~~~   87 (410)
                      +||.|+|+|.+|+.++..|+..|+ +.++|+|-+.                   .|++..+.-+..    ....+++.+.
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~-------------------~k~~g~a~DL~~~~~~~~~~~~v~~~   61 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD-------------------GMPQGKALDMRESSPIHGFDTRVTGT   61 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST-------------------THHHHHHHHHHHHHHHHTCCCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch-------------------HHHHHHHHHHhccccccCCCcEEEEC
Confidence            479999999999999999999997 5899988432                   233333333333    2234566543


Q ss_pred             ccCCCCCcchHhhhccCcEEEEccCC
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGLDN  113 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn  113 (410)
                      . .       .+-++++|+||.+...
T Consensus        62 ~-~-------~~a~~~aDvVii~ag~   79 (314)
T 3nep_X           62 N-D-------YGPTEDSDVCIITAGL   79 (314)
T ss_dssp             S-S-------SGGGTTCSEEEECCCC
T ss_pred             C-C-------HHHhCCCCEEEECCCC
Confidence            1 1       2447899999997643

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=94.26  E-value=0.25  Score=47.32  Aligned_cols=92  Identities=21%  Similarity=0.252  Sum_probs=57.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCC-cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~-~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      .+|.|||+|.+|..+++.|...|.. +++++|.+.                   .+.+.+    .+..  +.... ... 
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~-------------------~~~~~a----~~~G--~~~~~-~~~-   86 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP-------------------ESISKA----VDLG--IIDEG-TTS-   86 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH-------------------HHHHHH----HHTT--SCSEE-ESC-
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH-------------------HHHHHH----HHCC--Ccchh-cCC-
Confidence            7899999999999999999999974 688877432                   122222    1221  10001 111 


Q ss_pred             CCCcchHh-hhccCcEEEEccCChHHHHHHHHHHHH--CCCcEEEecc
Q 015243           92 KDPKFNVE-FFKQFNVVLNGLDNLDARRHVNRLCLA--ADVPLVESGT  136 (410)
Q Consensus        92 ~~~~~~~~-~~~~~DvVi~a~Dn~~~r~~i~~~c~~--~~~p~i~~g~  136 (410)
                           ..+ .+.++|+||.|+-.......+.++...  .+..+++.++
T Consensus        87 -----~~~~~~~~aDvVilavp~~~~~~vl~~l~~~l~~~~iv~d~~S  129 (314)
T 3ggo_A           87 -----IAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQGS  129 (314)
T ss_dssp             -----TTGGGGGCCSEEEECSCGGGHHHHHHHHHHHSCTTCEEEECCS
T ss_pred             -----HHHHhhccCCEEEEeCCHHHHHHHHHHHhhccCCCcEEEECCC
Confidence                 124 578999999998765555555555443  3455666543

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=94.26  E-value=0.043  Score=54.22  Aligned_cols=37  Identities=27%  Similarity=0.457  Sum_probs=35.0

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +|.+.||+|+|+|..|..+++.|..+|+++|+++|..
T Consensus       189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          189 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            5788999999999999999999999999999999965

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=94.24  E-value=0.13  Score=47.97  Aligned_cols=95  Identities=19%  Similarity=0.195  Sum_probs=55.8

Q ss_pred             HHHHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeE
Q 015243            6 QLEAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSI   84 (410)
Q Consensus         6 ~q~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i   84 (410)
                      .+..|.+++++|.| .||||.++++.|+..|.. +.++|.+.-..  .     .........+.+.+.+.+.+..  .++
T Consensus         4 ~m~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~-V~~~~r~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~--~~~   73 (281)
T 3s55_A            4 SMADFEGKTALITGGARGMGRSHAVALAEAGAD-IAICDRCENSD--V-----VGYPLATADDLAETVALVEKTG--RRC   73 (281)
T ss_dssp             --CTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSCCT--T-----CSSCCCCHHHHHHHHHHHHHTT--CCE
T ss_pred             cccccCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCcccc--c-----cccccccHHHHHHHHHHHHhcC--CeE
Confidence            34567889999998 689999999999999975 88888542110  0     0001112334444455555543  356


Q ss_pred             EEEccCCCCCcchHhhh-------ccCcEEEEc
Q 015243           85 TAHHANVKDPKFNVEFF-------KQFNVVLNG  110 (410)
Q Consensus        85 ~~~~~~i~~~~~~~~~~-------~~~DvVi~a  110 (410)
                      ..+..++++...-..++       .+.|++|++
T Consensus        74 ~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~n  106 (281)
T 3s55_A           74 ISAKVDVKDRAALESFVAEAEDTLGGIDIAITN  106 (281)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHTCCCEEEEC
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence            66666665432222222       367777774

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=94.23  E-value=0.13  Score=47.18  Aligned_cols=80  Identities=13%  Similarity=0.222  Sum_probs=50.2

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .|.+++++|.| .||||.++++.|+..|. ++.++|.+.                   .+.+.+.+.+.+..  .++..+
T Consensus        11 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~--~~~~~~   68 (260)
T 2zat_A           11 PLENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSRKQ-------------------ENVDRTVATLQGEG--LSVTGT   68 (260)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTT--CCEEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcC--CceEEE
Confidence            46778888887 68999999999999996 577776431                   23333444454433  245555


Q ss_pred             ccCCCCCcchHhh-------hccCcEEEEc
Q 015243           88 HANVKDPKFNVEF-------FKQFNVVLNG  110 (410)
Q Consensus        88 ~~~i~~~~~~~~~-------~~~~DvVi~a  110 (410)
                      ..++++......+       +.+.|+||++
T Consensus        69 ~~D~~~~~~~~~~~~~~~~~~g~iD~lv~~   98 (260)
T 2zat_A           69 VCHVGKAEDRERLVAMAVNLHGGVDILVSN   98 (260)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             EccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            5566443222222       2367888875

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=94.22  E-value=0.14  Score=49.64  Aligned_cols=78  Identities=14%  Similarity=0.232  Sum_probs=53.3

Q ss_pred             HHHhCCcEEEECCcHHHHHHHHHHHHhCC-CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC---CCe
Q 015243            8 EAIKGAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP---QMS   83 (410)
Q Consensus         8 ~~L~~~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np---~v~   83 (410)
                      ......||.|+|+|.+|+.++..|+..|. ..+.|+|-+                   ..|++..+.-+....+   ...
T Consensus        15 ~~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~-------------------~~~~~g~a~DL~~~~~~~~~~~   75 (331)
T 4aj2_A           15 EQVPQNKITVVGVGAVGMACAISILMKDLADELALVDVI-------------------EDKLKGEMMDLQHGSLFLKTPK   75 (331)
T ss_dssp             --CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC-------------------HHHHHHHHHHHHHTGGGCSCCE
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC-------------------hHHHHHHHHhhhhhhhccCCCe
Confidence            34567899999999999999999999997 479998832                   3566666666665432   223


Q ss_pred             EEEEccCCCCCcchHhhhccCcEEEEccC
Q 015243           84 ITAHHANVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        84 i~~~~~~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                      +... .     .+  +-++++|+||.+..
T Consensus        76 i~~~-~-----d~--~~~~~aDiVvi~aG   96 (331)
T 4aj2_A           76 IVSS-K-----DY--SVTANSKLVIITAG   96 (331)
T ss_dssp             EEEC-S-----SG--GGGTTEEEEEECCS
T ss_pred             EEEc-C-----CH--HHhCCCCEEEEccC
Confidence            3221 1     12  23789999998753

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=94.22  E-value=0.15  Score=47.71  Aligned_cols=82  Identities=11%  Similarity=0.275  Sum_probs=52.4

Q ss_pred             HHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEE
Q 015243            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (410)
Q Consensus         8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~   86 (410)
                      ..|++++++|.| .||||.++++.|+..|. ++.++|.+.                   .+.+.+++.+.+..  .++..
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~--~~~~~   86 (275)
T 4imr_A           29 FGLRGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKP-------------------GSTAAVQQRIIASG--GTAQE   86 (275)
T ss_dssp             HCCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESST-------------------TTTHHHHHHHHHTT--CCEEE
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCH-------------------HHHHHHHHHHHhcC--CeEEE
Confidence            457778888887 68999999999999997 577877421                   12333444554433  35566


Q ss_pred             EccCCCCCcchHhhhc------cCcEEEEcc
Q 015243           87 HHANVKDPKFNVEFFK------QFNVVLNGL  111 (410)
Q Consensus        87 ~~~~i~~~~~~~~~~~------~~DvVi~a~  111 (410)
                      +..++++......+++      +.|++|++.
T Consensus        87 ~~~Dv~~~~~~~~~~~~~~~~g~iD~lvnnA  117 (275)
T 4imr_A           87 LAGDLSEAGAGTDLIERAEAIAPVDILVINA  117 (275)
T ss_dssp             EECCTTSTTHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEecCCCHHHHHHHHHHHHHhCCCCEEEECC
Confidence            6666655433333332      678887743

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=94.20  E-value=0.13  Score=47.30  Aligned_cols=79  Identities=19%  Similarity=0.249  Sum_probs=51.2

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      +++++++|.| .||||.++++.|+..|. ++.++|.+.                   .+.+.+++.+++..  .++..+.
T Consensus         5 ~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~--~~~~~~~   62 (252)
T 3h7a_A            5 PRNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNG-------------------EKLAPLVAEIEAAG--GRIVARS   62 (252)
T ss_dssp             CCSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSG-------------------GGGHHHHHHHHHTT--CEEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcC--CeEEEEE
Confidence            5678899998 67999999999999997 488877432                   23344455555543  3566666


Q ss_pred             cCCCCCcchHhhhc------cCcEEEEc
Q 015243           89 ANVKDPKFNVEFFK------QFNVVLNG  110 (410)
Q Consensus        89 ~~i~~~~~~~~~~~------~~DvVi~a  110 (410)
                      .++++...-..+++      +.|++|++
T Consensus        63 ~Dv~~~~~v~~~~~~~~~~g~id~lv~n   90 (252)
T 3h7a_A           63 LDARNEDEVTAFLNAADAHAPLEVTIFN   90 (252)
T ss_dssp             CCTTCHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred             CcCCCHHHHHHHHHHHHhhCCceEEEEC
Confidence            66654332223333      55777764

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=94.20  E-value=0.23  Score=47.40  Aligned_cols=33  Identities=24%  Similarity=0.484  Sum_probs=28.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC-CcEEEEeCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~D   45 (410)
                      .||.|+|+|.+|+.++..|+..|. .+++++|.+
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~   34 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVV   34 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            379999999999999999998764 469999854

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=94.18  E-value=0.17  Score=47.44  Aligned_cols=84  Identities=18%  Similarity=0.370  Sum_probs=50.9

Q ss_pred             HHHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEE
Q 015243            7 LEAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSIT   85 (410)
Q Consensus         7 q~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~   85 (410)
                      ...|++++++|.| .||||.++++.|+..|. ++.++|...                  ..+.+.+++.+.+.. ..++.
T Consensus        20 ~~~l~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~~-~~~~~   79 (281)
T 3v2h_A           20 FQSMMTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGFGA------------------PDEIRTVTDEVAGLS-SGTVL   79 (281)
T ss_dssp             --CCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECCCC------------------HHHHHHHHHHHHTTC-SSCEE
T ss_pred             hhccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCC------------------hHHHHHHHHHHhhcc-CCcEE
Confidence            3456778899998 68999999999999997 577766321                  123344444444432 23566


Q ss_pred             EEccCCCCCcchHhhh-------ccCcEEEEc
Q 015243           86 AHHANVKDPKFNVEFF-------KQFNVVLNG  110 (410)
Q Consensus        86 ~~~~~i~~~~~~~~~~-------~~~DvVi~a  110 (410)
                      .+..++++...-..++       .+.|++|++
T Consensus        80 ~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~n  111 (281)
T 3v2h_A           80 HHPADMTKPSEIADMMAMVADRFGGADILVNN  111 (281)
T ss_dssp             EECCCTTCHHHHHHHHHHHHHHTSSCSEEEEC
T ss_pred             EEeCCCCCHHHHHHHHHHHHHHCCCCCEEEEC
Confidence            6666665432222222       356777764

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=94.11  E-value=0.095  Score=49.26  Aligned_cols=32  Identities=22%  Similarity=0.444  Sum_probs=28.0

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ++|.|||+|.+|+.++++|+..|. +++++|.+
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~-~V~~~dr~   33 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGF-DVTVWNRN   33 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTC-CEEEECSS
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence            489999999999999999999995 48887744

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=94.11  E-value=0.14  Score=49.64  Aligned_cols=34  Identities=32%  Similarity=0.420  Sum_probs=30.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ..||.|+|+|.+|..++..|+..|...++|+|.|
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~   42 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVV   42 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            3589999999999999999999998559999854

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=94.09  E-value=0.22  Score=47.01  Aligned_cols=96  Identities=18%  Similarity=0.210  Sum_probs=58.0

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        12 ~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      .++|+|.|+ |.+|..+++.|...|. ++++++.+.               +   .+++.+. .+..  +.+  +....+
T Consensus        11 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~---------------~---~~~~~~~-~l~~--~~v--~~v~~D   66 (318)
T 2r6j_A           11 KSKILIFGGTGYIGNHMVKGSLKLGH-PTYVFTRPN---------------S---SKTTLLD-EFQS--LGA--IIVKGE   66 (318)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTC-CEEEEECTT---------------C---SCHHHHH-HHHH--TTC--EEEECC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHCCC-cEEEEECCC---------------C---chhhHHH-Hhhc--CCC--EEEEec
Confidence            358999995 9999999999999995 566665321               1   1122221 1221  233  445566


Q ss_pred             CCCCcchHhhhccCcEEEEccCC--hHHHHHHHHHHHHCC-CcE
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLDN--LDARRHVNRLCLAAD-VPL  131 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~Dn--~~~r~~i~~~c~~~~-~p~  131 (410)
                      +++...-...++++|+||.+...  ......+-+.|.+.+ ++.
T Consensus        67 l~d~~~l~~a~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~  110 (318)
T 2r6j_A           67 LDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKR  110 (318)
T ss_dssp             TTCHHHHHHHHTTCSEEEECCCGGGSTTHHHHHHHHHHHCCCCE
T ss_pred             CCCHHHHHHHHcCCCEEEECCchhhhHHHHHHHHHHHhcCCCCE
Confidence            65543344567899999997653  223344556666665 543

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=94.07  E-value=0.23  Score=46.87  Aligned_cols=31  Identities=32%  Similarity=0.594  Sum_probs=26.3

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ++|+|.| .|.||..+++.|+..|. +++++|.
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r   33 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEGL-SVVVVDN   33 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeC
Confidence            4799998 59999999999999994 5777764

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=94.07  E-value=0.062  Score=48.63  Aligned_cols=31  Identities=23%  Similarity=0.347  Sum_probs=26.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEE-Ee
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHI-ID   43 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~l-iD   43 (410)
                      ..+|.|||+|.+|..+++.|+..|.. +++ .|
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~-V~~v~~   54 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIP-AIIANS   54 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCC-EEEECT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCE-EEEEEC
Confidence            46899999999999999999999974 555 44

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=94.07  E-value=0.11  Score=48.85  Aligned_cols=32  Identities=19%  Similarity=0.366  Sum_probs=26.0

Q ss_pred             hCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      .+++|+|.| .|.||+.+++.|...|.. +++++
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~-v~~~~   34 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRGDV-ELVLR   34 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTE-EEECC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCe-EEEEe
Confidence            356899998 599999999999998863 55554

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=94.05  E-value=0.18  Score=47.20  Aligned_cols=87  Identities=14%  Similarity=0.247  Sum_probs=56.1

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      |++++++|.| .||||.++++.|+..|. ++.++|.+.-....+.            .+.+.+++.+.+..  .++..+.
T Consensus         7 l~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~------------~~~~~~~~~~~~~~--~~~~~~~   71 (285)
T 3sc4_A            7 LRGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAEPHPKLP------------GTIYTAAKEIEEAG--GQALPIV   71 (285)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSC------------CCHHHHHHHHHHHT--SEEEEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChhhhhhhh------------HHHHHHHHHHHhcC--CcEEEEE
Confidence            6778899998 68999999999999997 5888886543222211            12334455555554  3666777


Q ss_pred             cCCCCCcchHhhh-------ccCcEEEEcc
Q 015243           89 ANVKDPKFNVEFF-------KQFNVVLNGL  111 (410)
Q Consensus        89 ~~i~~~~~~~~~~-------~~~DvVi~a~  111 (410)
                      .++++...-..++       .+.|++|++.
T Consensus        72 ~Dv~~~~~v~~~~~~~~~~~g~id~lvnnA  101 (285)
T 3sc4_A           72 GDIRDGDAVAAAVAKTVEQFGGIDICVNNA  101 (285)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            7776543222333       3788888853

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=94.04  E-value=0.16  Score=48.09  Aligned_cols=80  Identities=20%  Similarity=0.270  Sum_probs=53.5

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      +.+++|+|.| .||||.++++.|+..|.. +.++|.+                   ..+.+.+++.+....  .++..+.
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~~-V~~~~r~-------------------~~~~~~~~~~l~~~~--~~~~~~~   86 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGAR-LVLSDVD-------------------QPALEQAVNGLRGQG--FDAHGVV   86 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESC-------------------HHHHHHHHHHHHHTT--CCEEEEE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECC-------------------HHHHHHHHHHHHhcC--CceEEEE
Confidence            5678899998 589999999999999964 7777632                   234555556665543  3566666


Q ss_pred             cCCCCCcchHhhh-------ccCcEEEEcc
Q 015243           89 ANVKDPKFNVEFF-------KQFNVVLNGL  111 (410)
Q Consensus        89 ~~i~~~~~~~~~~-------~~~DvVi~a~  111 (410)
                      .++++......++       .+.|+||++.
T Consensus        87 ~Dv~d~~~v~~~~~~~~~~~g~id~lvnnA  116 (301)
T 3tjr_A           87 CDVRHLDEMVRLADEAFRLLGGVDVVFSNA  116 (301)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSSCSEEEECC
T ss_pred             ccCCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence            6775543222333       3678888853

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=94.03  E-value=0.041  Score=52.23  Aligned_cols=34  Identities=26%  Similarity=0.407  Sum_probs=31.8

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      +.+++++|+|+||.|..++..|...|+++|+|++
T Consensus       120 ~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~n  153 (282)
T 3fbt_A          120 IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVT  153 (282)
T ss_dssp             CTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEE
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEe
Confidence            4678999999999999999999999999999986

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=94.02  E-value=0.14  Score=48.64  Aligned_cols=32  Identities=22%  Similarity=0.324  Sum_probs=28.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ..+|.|||+|.+|+.++++|+..|. +++++|.
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr   38 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGL-STWGADL   38 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-eEEEEEC
Confidence            5689999999999999999999996 5777764

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=94.00  E-value=0.15  Score=47.62  Aligned_cols=82  Identities=13%  Similarity=0.233  Sum_probs=51.6

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .|++++++|.| .||||.++++.|+..|. ++.++|.+                   ..+.+.+.+.+.+.. ..++..+
T Consensus        24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~~~~~~-~~~~~~~   82 (277)
T 4fc7_A           24 LLRDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRS-------------------LPRVLTAARKLAGAT-GRRCLPL   82 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESC-------------------HHHHHHHHHHHHHHH-SSCEEEE
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHHhc-CCcEEEE
Confidence            46788899998 57999999999999997 68887743                   223344444443322 2356666


Q ss_pred             ccCCCCCcchHhh-------hccCcEEEEcc
Q 015243           88 HANVKDPKFNVEF-------FKQFNVVLNGL  111 (410)
Q Consensus        88 ~~~i~~~~~~~~~-------~~~~DvVi~a~  111 (410)
                      ..++++......+       +.+.|++|++.
T Consensus        83 ~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA  113 (277)
T 4fc7_A           83 SMDVRAPPAVMAAVDQALKEFGRIDILINCA  113 (277)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            6666543222222       23677777753

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=93.99  E-value=0.33  Score=49.06  Aligned_cols=126  Identities=12%  Similarity=0.147  Sum_probs=67.7

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCC--CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEE
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGF--QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv--~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~   86 (410)
                      ...++|+|.| .|.||+++++.|+..+-  .++.+++...-....+.|.  -..-.-|.+  +.. +.+.... .-+++.
T Consensus        71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l--~~~~~~~~~--~~~-~~~~~~~-~~~v~~  144 (478)
T 4dqv_A           71 PELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRL--EKTFDSGDP--ELL-RHFKELA-ADRLEV  144 (478)
T ss_dssp             SCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHH--HGGGCSSCH--HHH-HHHHHHH-TTTEEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHH--HHHHHhcch--hhh-hhhhhhc-cCceEE
Confidence            3568999999 59999999999999831  4677776432111100000  000000100  000 1111111 135677


Q ss_pred             EccCCCCCc------chHhhhccCcEEEEccC-------------ChHHHHHHHHHHHHCCC-cEEEecccCccc
Q 015243           87 HHANVKDPK------FNVEFFKQFNVVLNGLD-------------NLDARRHVNRLCLAADV-PLVESGTTGFLG  141 (410)
Q Consensus        87 ~~~~i~~~~------~~~~~~~~~DvVi~a~D-------------n~~~r~~i~~~c~~~~~-p~i~~g~~G~~G  141 (410)
                      +..++++..      .-...++++|+||.+..             |...-..+-+.|.+.++ +++..++.+.+|
T Consensus       145 v~~Dl~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS~~v~~  219 (478)
T 4dqv_A          145 VAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNAFPYHELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGA  219 (478)
T ss_dssp             EECCTTSGGGGCCHHHHHHHHHHCCEEEECCSSCSBSSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEEGGGGT
T ss_pred             EEeECCCcccCCCHHHHHHHHcCCCEEEECccccCCcCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeehhhcC
Confidence            777775432      12345678999998642             22334556667777764 788777655443

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=93.98  E-value=0.24  Score=45.56  Aligned_cols=80  Identities=16%  Similarity=0.280  Sum_probs=50.7

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      |.+++++|.| .||||.++++.|+..|. ++.++|.+.                   .+.+.+.+.+.+..  .++..+.
T Consensus         7 l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~--~~~~~~~   64 (260)
T 2ae2_A            7 LEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQ-------------------KELNDCLTQWRSKG--FKVEASV   64 (260)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTT--CEEEEEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcC--CcEEEEE
Confidence            5678899998 68999999999999996 477776432                   23333444444432  3566666


Q ss_pred             cCCCCCcchHhhh--------ccCcEEEEcc
Q 015243           89 ANVKDPKFNVEFF--------KQFNVVLNGL  111 (410)
Q Consensus        89 ~~i~~~~~~~~~~--------~~~DvVi~a~  111 (410)
                      .++++...-..++        .+.|+||++.
T Consensus        65 ~D~~~~~~~~~~~~~~~~~~~g~id~lv~~A   95 (260)
T 2ae2_A           65 CDLSSRSERQELMNTVANHFHGKLNILVNNA   95 (260)
T ss_dssp             CCTTCHHHHHHHHHHHHHHTTTCCCEEEECC
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCCCCEEEECC
Confidence            6665432222222        4678888753

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=93.97  E-value=0.15  Score=46.99  Aligned_cols=30  Identities=20%  Similarity=0.429  Sum_probs=26.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      .+|.|||+|.+|..+++.|...| ..+.++|
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g-~~v~~~~   33 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTP-HELIISG   33 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSS-CEEEEEC
T ss_pred             cEEEEECCCHHHHHHHHHHHhCC-CeEEEEC
Confidence            58999999999999999999988 4677766

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=93.96  E-value=0.05  Score=51.13  Aligned_cols=34  Identities=24%  Similarity=0.490  Sum_probs=31.1

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +..++|+|+|+|++|..+++.|...|+ +++++|.
T Consensus       127 ~~~~~v~iiGaG~~g~aia~~L~~~g~-~V~v~~r  160 (275)
T 2hk9_A          127 VKEKSILVLGAGGASRAVIYALVKEGA-KVFLWNR  160 (275)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHcCC-EEEEEEC
Confidence            567899999999999999999999998 8998873

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=93.94  E-value=0.15  Score=47.45  Aligned_cols=80  Identities=20%  Similarity=0.343  Sum_probs=52.4

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      |++++++|.| .||||.++++.|+..|.. +.++|.+                   ..+.+.+++.+.+..  .++..+.
T Consensus         2 l~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~-------------------~~~~~~~~~~l~~~~--~~~~~~~   59 (264)
T 3tfo_A            2 VMDKVILITGASGGIGEGIARELGVAGAK-ILLGARR-------------------QARIEAIATEIRDAG--GTALAQV   59 (264)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESS-------------------HHHHHHHHHHHHHTT--CEEEEEE
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCE-EEEEECC-------------------HHHHHHHHHHHHhcC--CcEEEEE
Confidence            3567788888 589999999999999975 7777632                   234555666665543  3566666


Q ss_pred             cCCCCCcchHhh-------hccCcEEEEcc
Q 015243           89 ANVKDPKFNVEF-------FKQFNVVLNGL  111 (410)
Q Consensus        89 ~~i~~~~~~~~~-------~~~~DvVi~a~  111 (410)
                      .++++......+       +.+.|++|++.
T Consensus        60 ~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnA   89 (264)
T 3tfo_A           60 LDVTDRHSVAAFAQAAVDTWGRIDVLVNNA   89 (264)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            666543222222       33678888853

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=93.93  E-value=0.27  Score=45.95  Aligned_cols=81  Identities=17%  Similarity=0.263  Sum_probs=52.6

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      +.++.++|.| .||||.++++.|+..|.. +.++|..                  ...+.+.+++.+....+  ++..+.
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~~~------------------~~~~~~~~~~~~~~~~~--~~~~~~   85 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGFD-IAITGIG------------------DAEGVAPVIAELSGLGA--RVIFLR   85 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESC------------------CHHHHHHHHHHHHHTTC--CEEEEE
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCCe-EEEEeCC------------------CHHHHHHHHHHHHhcCC--cEEEEE
Confidence            4567788887 689999999999999974 7777621                  12344555556655543  566666


Q ss_pred             cCCCCCcchHhhhc-------cCcEEEEcc
Q 015243           89 ANVKDPKFNVEFFK-------QFNVVLNGL  111 (410)
Q Consensus        89 ~~i~~~~~~~~~~~-------~~DvVi~a~  111 (410)
                      .++++...-..+++       +.|++|++.
T Consensus        86 ~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnA  115 (280)
T 4da9_A           86 ADLADLSSHQATVDAVVAEFGRIDCLVNNA  115 (280)
T ss_dssp             CCTTSGGGHHHHHHHHHHHHSCCCEEEEEC
T ss_pred             ecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            67765433333333       678887753

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=93.91  E-value=0.12  Score=49.53  Aligned_cols=92  Identities=23%  Similarity=0.302  Sum_probs=59.6

Q ss_pred             HHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEE
Q 015243            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (410)
Q Consensus         8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~   86 (410)
                      ..|.+++++|.| .||||.++++.|+..|. ++.++|.+.-    +.|     ...-...+.+.+.+.+.+..  .++..
T Consensus        23 ~~l~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~~~----~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~   90 (322)
T 3qlj_A           23 GVVDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVG----LDG-----SPASGGSAAQSVVDEITAAG--GEAVA   90 (322)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBC----TTS-----SBTCTTSHHHHHHHHHHHTT--CEEEE
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCccc----ccc-----cccccHHHHHHHHHHHHhcC--CcEEE
Confidence            356778888887 68999999999999997 5888875531    111     11122445666667776654  36777


Q ss_pred             EccCCCCCcchHhhh-------ccCcEEEEcc
Q 015243           87 HHANVKDPKFNVEFF-------KQFNVVLNGL  111 (410)
Q Consensus        87 ~~~~i~~~~~~~~~~-------~~~DvVi~a~  111 (410)
                      +..++++...-..++       .+.|++|++.
T Consensus        91 ~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nA  122 (322)
T 3qlj_A           91 DGSNVADWDQAAGLIQTAVETFGGLDVLVNNA  122 (322)
T ss_dssp             ECCCTTSHHHHHHHHHHHHHHHSCCCEEECCC
T ss_pred             EECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            777776543222333       3778888853

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=93.91  E-value=0.17  Score=47.60  Aligned_cols=31  Identities=29%  Similarity=0.463  Sum_probs=27.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .+|.|||+|.+|..+++.|+..|. +++++|.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~   36 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVSDR   36 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECS
T ss_pred             ceEEEECchHHHHHHHHHHHhCCC-EEEEEeC
Confidence            589999999999999999999996 5777763

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=93.90  E-value=0.1  Score=48.57  Aligned_cols=36  Identities=25%  Similarity=0.398  Sum_probs=27.6

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +=..++|+|.| .|.||+.+++.|+..|. +++++|.+
T Consensus         9 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   45 (292)
T 1vl0_A            9 HHHHMKILITGANGQLGREIQKQLKGKNV-EVIPTDVQ   45 (292)
T ss_dssp             ---CEEEEEESTTSHHHHHHHHHHTTSSE-EEEEECTT
T ss_pred             ccccceEEEECCCChHHHHHHHHHHhCCC-eEEeccCc
Confidence            44567899998 69999999999999884 57777654

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=93.90  E-value=0.1  Score=48.66  Aligned_cols=80  Identities=21%  Similarity=0.313  Sum_probs=50.4

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .|.+++++|.| .||||.++++.|+..|. ++.++|.+                   ..+.+.+.+.+++..+  ++..+
T Consensus        23 ~l~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~~--~~~~~   80 (271)
T 4ibo_A           23 DLGGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTD-------------------PSRVAQTVQEFRNVGH--DAEAV   80 (271)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSC-------------------HHHHHHHHHHHHHTTC--CEEEC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhcCC--ceEEE
Confidence            36677888887 68999999999999997 47776532                   2344555555555443  45555


Q ss_pred             ccCCCCCcchHhhh-------ccCcEEEEc
Q 015243           88 HANVKDPKFNVEFF-------KQFNVVLNG  110 (410)
Q Consensus        88 ~~~i~~~~~~~~~~-------~~~DvVi~a  110 (410)
                      ..++++...-..++       .+.|++|++
T Consensus        81 ~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~n  110 (271)
T 4ibo_A           81 AFDVTSESEIIEAFARLDEQGIDVDILVNN  110 (271)
T ss_dssp             CCCTTCHHHHHHHHHHHHHHTCCCCEEEEC
T ss_pred             EcCCCCHHHHHHHHHHHHHHCCCCCEEEEC
Confidence            55665432222222       256777774

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=93.90  E-value=0.057  Score=53.48  Aligned_cols=38  Identities=16%  Similarity=0.398  Sum_probs=35.8

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      +|...||+|+|+|+.|..+++.|..+|+++|+++|.+-
T Consensus       185 ~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          185 SLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             CTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            57889999999999999999999999999999999875

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=93.89  E-value=0.32  Score=45.20  Aligned_cols=94  Identities=18%  Similarity=0.223  Sum_probs=58.0

Q ss_pred             HHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEE
Q 015243            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (410)
Q Consensus         8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~   86 (410)
                      ..|++++++|.| .||||.++++.|+..|.. +.++|.+.-....+.    +.  .-...+.+.+++.+.+..  .++..
T Consensus        11 ~~l~gk~~lVTGas~gIG~a~a~~la~~G~~-V~~~~r~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~--~~~~~   81 (280)
T 3pgx_A           11 GSLQGRVAFITGAARGQGRSHAVRLAAEGAD-IIACDICAPVSASVT----YA--PASPEDLDETARLVEDQG--RKALT   81 (280)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCCCTTCC----SC--CCCHHHHHHHHHHHHTTT--CCEEE
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEecccccccccc----cc--ccCHHHHHHHHHHHHhcC--CeEEE
Confidence            357788899998 689999999999999974 788875432111111    11  112345555666666543  35666


Q ss_pred             EccCCCCCcchHhh-------hccCcEEEEc
Q 015243           87 HHANVKDPKFNVEF-------FKQFNVVLNG  110 (410)
Q Consensus        87 ~~~~i~~~~~~~~~-------~~~~DvVi~a  110 (410)
                      +..++++...-..+       +.+.|++|++
T Consensus        82 ~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnn  112 (280)
T 3pgx_A           82 RVLDVRDDAALRELVADGMEQFGRLDVVVAN  112 (280)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_pred             EEcCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            66677544322233       2367888885

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=93.86  E-value=0.055  Score=50.47  Aligned_cols=35  Identities=31%  Similarity=0.577  Sum_probs=31.7

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +.+ +++|+|+||.|..++..|...|+++|+++|.+
T Consensus       107 ~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~  141 (253)
T 3u62_A          107 VKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRT  141 (253)
T ss_dssp             CCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESC
T ss_pred             CCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            356 99999999999999999999999999998754

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=93.86  E-value=0.17  Score=46.94  Aligned_cols=95  Identities=18%  Similarity=0.238  Sum_probs=58.8

Q ss_pred             HHHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEE
Q 015243            7 LEAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSIT   85 (410)
Q Consensus         7 q~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~   85 (410)
                      ...|.+++++|.| .||||.++++.|+..|.. +.++|.+.-. ..+.    +.  .-...+.+.+.+.+....+  ++.
T Consensus         8 ~~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~-~~~~----~~--~~~~~~~~~~~~~~~~~~~--~~~   77 (278)
T 3sx2_A            8 EGPLTGKVAFITGAARGQGRAHAVRLAADGAD-IIAVDLCDQI-ASVP----YP--LATPEELAATVKLVEDIGS--RIV   77 (278)
T ss_dssp             -CTTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCC-TTCS----SC--CCCHHHHHHHHHHHHHHTC--CEE
T ss_pred             CCCCCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeccccc-cccc----cc--ccchHHHHHHHHHHHhcCC--eEE
Confidence            3457888999998 689999999999999976 7787754210 0000    00  0123345555556666543  566


Q ss_pred             EEccCCCCCcchHhhh-------ccCcEEEEcc
Q 015243           86 AHHANVKDPKFNVEFF-------KQFNVVLNGL  111 (410)
Q Consensus        86 ~~~~~i~~~~~~~~~~-------~~~DvVi~a~  111 (410)
                      .+..++++...-..++       .+.|++|++.
T Consensus        78 ~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nA  110 (278)
T 3sx2_A           78 ARQADVRDRESLSAALQAGLDELGRLDIVVANA  110 (278)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_pred             EEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            7777776543333333       3789998853

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=93.86  E-value=0.078  Score=49.22  Aligned_cols=31  Identities=29%  Similarity=0.530  Sum_probs=26.4

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ++|+|.| .|.+|..+++.|...|. +++.+|.
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r   37 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEY-DIYPFDK   37 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTE-EEEEECT
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCC-EEEEecc
Confidence            4899999 59999999999999885 5777765

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=93.86  E-value=0.058  Score=47.67  Aligned_cols=32  Identities=25%  Similarity=0.514  Sum_probs=29.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ...|+|||+|..|..+|..|++.|+. ++|+|.
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~-V~v~Ek   33 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQ-VHLFDK   33 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCC-EEEECS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCC-EEEEEC
Confidence            45799999999999999999999995 999885

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=93.84  E-value=0.098  Score=52.91  Aligned_cols=109  Identities=16%  Similarity=0.146  Sum_probs=61.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~   92 (410)
                      ++|.|||+|.+|..++..|+..|. +++++|.+.-....+++... ...+.|..  +.+++.+.  ..  ++....    
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~-~V~~~D~~~~~v~~l~~g~~-~i~e~gl~--~~l~~~~~--~~--~l~~t~----   70 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGA-NVRCIDTDRNKIEQLNSGTI-PIYEPGLE--KMIARNVK--AG--RLRFGT----   70 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTCS-CCCSTTHH--HHHHHHHH--TT--SEEEES----
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCC-EEEEEECCHHHHHHHHcCCC-cccCCCHH--HHHHhhcc--cC--cEEEEC----
Confidence            689999999999999999999996 68899876533333332211 00111211  11222211  11  122211    


Q ss_pred             CCcchHhhhccCcEEEEccCCh----------HHHHHHHHHHHH--CCCcEEEecc
Q 015243           93 DPKFNVEFFKQFNVVLNGLDNL----------DARRHVNRLCLA--ADVPLVESGT  136 (410)
Q Consensus        93 ~~~~~~~~~~~~DvVi~a~Dn~----------~~r~~i~~~c~~--~~~p~i~~g~  136 (410)
                         ...+.++++|+||.|+.+.          ..+..+..+...  .+..+++.++
T Consensus        71 ---d~~ea~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~ST  123 (450)
T 3gg2_A           71 ---EIEQAVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKST  123 (450)
T ss_dssp             ---CHHHHGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred             ---CHHHHHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeee
Confidence               1234578899999998665          445555554443  3445555543

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=93.83  E-value=0.19  Score=48.18  Aligned_cols=72  Identities=22%  Similarity=0.316  Sum_probs=49.9

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC-CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC---CCCeEEEEc
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR---PQMSITAHH   88 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~n---p~v~i~~~~   88 (410)
                      .||.|+|+|.+|..++..|+..|. ++|.|+|-+                   ..|++..+..+....   ..+++++  
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~-------------------~~k~~g~a~dl~~~~~~~~~~~v~~--   59 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLD-------------------RKLAQAHAEDILHATPFAHPVWVWA--   59 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS-------------------HHHHHHHHHHHHTTGGGSCCCEEEE--
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC-------------------hhHHHHHHHHHHHhHhhcCCeEEEE--
Confidence            479999999999999999998875 579998833                   234554444444432   3556654  


Q ss_pred             cCCCCCcchHhhhccCcEEEEccC
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                      ..       .+-++++|+||.+..
T Consensus        60 ~~-------~~a~~~aD~Vii~ag   76 (310)
T 2xxj_A           60 GS-------YGDLEGARAVVLAAG   76 (310)
T ss_dssp             CC-------GGGGTTEEEEEECCC
T ss_pred             CC-------HHHhCCCCEEEECCC
Confidence            11       133789999999764

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=93.83  E-value=0.16  Score=47.10  Aligned_cols=63  Identities=24%  Similarity=0.332  Sum_probs=42.3

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      +.+++|+|.| .||||.++++.|+..|.. +.+++.+                  ...+.+.+++.+++...  ++..+.
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~~-V~~~~r~------------------~~~~~~~~~~~~~~~~~--~~~~~~   85 (271)
T 4iin_A           27 FTGKNVLITGASKGIGAEIAKTLASMGLK-VWINYRS------------------NAEVADALKNELEEKGY--KAAVIK   85 (271)
T ss_dssp             CSCCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESS------------------CHHHHHHHHHHHHHTTC--CEEEEE
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC------------------CHHHHHHHHHHHHhcCC--ceEEEE
Confidence            5677888888 689999999999999985 6676632                  12344555556655543  455555


Q ss_pred             cCCCC
Q 015243           89 ANVKD   93 (410)
Q Consensus        89 ~~i~~   93 (410)
                      .++++
T Consensus        86 ~D~~~   90 (271)
T 4iin_A           86 FDAAS   90 (271)
T ss_dssp             CCTTC
T ss_pred             CCCCC
Confidence            56543

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=93.82  E-value=0.13  Score=49.90  Aligned_cols=33  Identities=18%  Similarity=0.287  Sum_probs=27.3

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ++|+|.| .|.+|..+++.|...|.-+++.+|.+
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~   34 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ   34 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC
Confidence            4799999 69999999999999997556666643

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=93.82  E-value=0.16  Score=47.13  Aligned_cols=81  Identities=21%  Similarity=0.390  Sum_probs=53.5

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      +|.+++++|.| .||||.++++.|+..|.. +.++|.+                   ..+.+.+++.+.+.. ..++..+
T Consensus        17 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~-------------------~~~~~~~~~~l~~~~-~~~~~~~   75 (266)
T 4egf_A           17 RLDGKRALITGATKGIGADIARAFAAAGAR-LVLSGRD-------------------VSELDAARRALGEQF-GTDVHTV   75 (266)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESC-------------------HHHHHHHHHHHHHHH-CCCEEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCC-------------------HHHHHHHHHHHHHhc-CCcEEEE
Confidence            46678888887 689999999999999975 7787743                   234445555555422 2356667


Q ss_pred             ccCCCCCcchHhhh-------ccCcEEEEc
Q 015243           88 HANVKDPKFNVEFF-------KQFNVVLNG  110 (410)
Q Consensus        88 ~~~i~~~~~~~~~~-------~~~DvVi~a  110 (410)
                      ..++++...-..++       .+.|++|++
T Consensus        76 ~~Dv~~~~~v~~~~~~~~~~~g~id~lv~n  105 (266)
T 4egf_A           76 AIDLAEPDAPAELARRAAEAFGGLDVLVNN  105 (266)
T ss_dssp             ECCTTSTTHHHHHHHHHHHHHTSCSEEEEE
T ss_pred             EecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            77776543333333       367888875

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=93.80  E-value=0.2  Score=46.50  Aligned_cols=80  Identities=13%  Similarity=0.168  Sum_probs=50.9

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      +.+++|+|.| .|+||.++++.|+..|. ++.++|.+.                   .+.+.+.+.+++..+  ++..+.
T Consensus        29 l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~--~~~~~~   86 (272)
T 1yb1_A           29 VTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINK-------------------HGLEETAAKCKGLGA--KVHTFV   86 (272)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTTC--CEEEEE
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCH-------------------HHHHHHHHHHHhcCC--eEEEEE
Confidence            6678899998 68999999999999996 477777331                   233344445554432  455566


Q ss_pred             cCCCCCcchHhh-------hccCcEEEEcc
Q 015243           89 ANVKDPKFNVEF-------FKQFNVVLNGL  111 (410)
Q Consensus        89 ~~i~~~~~~~~~-------~~~~DvVi~a~  111 (410)
                      .++++...-..+       +.+.|+||++.
T Consensus        87 ~Dl~~~~~v~~~~~~~~~~~g~iD~li~~A  116 (272)
T 1yb1_A           87 VDCSNREDIYSSAKKVKAEIGDVSILVNNA  116 (272)
T ss_dssp             CCTTCHHHHHHHHHHHHHHTCCCSEEEECC
T ss_pred             eeCCCHHHHHHHHHHHHHHCCCCcEEEECC
Confidence            666543222222       23678888754

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=93.79  E-value=0.23  Score=50.25  Aligned_cols=97  Identities=16%  Similarity=0.211  Sum_probs=70.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      .++|+|+|.|-+|..+++.|-. + .++.+++.|                   +.|++.+++.+    |++.  ...++.
T Consensus       235 ~~~v~I~GgG~ig~~lA~~L~~-~-~~v~iIE~d-------------------~~r~~~la~~l----~~~~--Vi~GD~  287 (461)
T 4g65_A          235 YRRIMIVGGGNIGASLAKRLEQ-T-YSVKLIERN-------------------LQRAEKLSEEL----ENTI--VFCGDA  287 (461)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTT-T-SEEEEEESC-------------------HHHHHHHHHHC----TTSE--EEESCT
T ss_pred             ccEEEEEcchHHHHHHHHHhhh-c-CceEEEecC-------------------HHHHHHHHHHC----CCce--EEeccc
Confidence            4689999999999999999853 3 468888743                   34555555543    5443  344555


Q ss_pred             CCC-cchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEec
Q 015243           92 KDP-KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (410)
Q Consensus        92 ~~~-~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g  135 (410)
                      ++. .+.++-+.++|+++.++++.+.-.....++++.+.+-+-+-
T Consensus       288 td~~~L~ee~i~~~D~~ia~T~~De~Ni~~~llAk~~gv~kvIa~  332 (461)
T 4g65_A          288 ADQELLTEENIDQVDVFIALTNEDETNIMSAMLAKRMGAKKVMVL  332 (461)
T ss_dssp             TCHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             cchhhHhhcCchhhcEEEEcccCcHHHHHHHHHHHHcCCcccccc
Confidence            433 33445678999999999999999999999999988765543

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=93.78  E-value=0.2  Score=46.34  Aligned_cols=81  Identities=14%  Similarity=0.187  Sum_probs=53.0

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .|.+++++|.| .||||.++++.|+..|.. +.++|.+                   ..+.+.+++.+.+..  .++..+
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~-------------------~~~~~~~~~~~~~~~--~~~~~~   65 (264)
T 3ucx_A            8 LLTDKVVVISGVGPALGTTLARRCAEQGAD-LVLAART-------------------VERLEDVAKQVTDTG--RRALSV   65 (264)
T ss_dssp             TTTTCEEEEESCCTTHHHHHHHHHHHTTCE-EEEEESC-------------------HHHHHHHHHHHHHTT--CCEEEE
T ss_pred             CcCCcEEEEECCCcHHHHHHHHHHHHCcCE-EEEEeCC-------------------HHHHHHHHHHHHhcC--CcEEEE
Confidence            46788899998 579999999999999975 7777642                   234555555565543  355566


Q ss_pred             ccCCCCCcchHhhh-------ccCcEEEEcc
Q 015243           88 HANVKDPKFNVEFF-------KQFNVVLNGL  111 (410)
Q Consensus        88 ~~~i~~~~~~~~~~-------~~~DvVi~a~  111 (410)
                      ..++++...-..++       .+.|++|++.
T Consensus        66 ~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA   96 (264)
T 3ucx_A           66 GTDITDDAQVAHLVDETMKAYGRVDVVINNA   96 (264)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHTSCCSEEEECC
T ss_pred             EcCCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence            66665432222222       3678887753

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=93.78  E-value=0.11  Score=49.74  Aligned_cols=34  Identities=15%  Similarity=0.294  Sum_probs=30.2

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHh-CCCcEEEEe
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALS-GFQDIHIID   43 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~-Gv~~i~liD   43 (410)
                      ...++|.|||+|.+|..++++|... |+.++++.|
T Consensus       133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~d  167 (312)
T 2i99_A          133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWN  167 (312)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEEC
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEc
Confidence            3467899999999999999999987 888899876

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=93.77  E-value=0.19  Score=45.63  Aligned_cols=81  Identities=16%  Similarity=0.253  Sum_probs=51.1

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      +.+++|+|.| .|+||.++++.|+..|. ++.++|.+.                  ..+.+.+.+.+....  .++..+.
T Consensus         5 l~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~~--~~~~~~~   63 (258)
T 3afn_B            5 LKGKRVLITGSSQGIGLATARLFARAGA-KVGLHGRKA------------------PANIDETIASMRADG--GDAAFFA   63 (258)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC------------------CTTHHHHHHHHHHTT--CEEEEEE
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEECCCc------------------hhhHHHHHHHHHhcC--CceEEEE
Confidence            6778899887 68999999999999996 477776431                  112333444444433  3566666


Q ss_pred             cCCCCCcchHhhhc-------cCcEEEEcc
Q 015243           89 ANVKDPKFNVEFFK-------QFNVVLNGL  111 (410)
Q Consensus        89 ~~i~~~~~~~~~~~-------~~DvVi~a~  111 (410)
                      .++++......+++       +.|+||++.
T Consensus        64 ~D~~~~~~~~~~~~~~~~~~g~id~vi~~A   93 (258)
T 3afn_B           64 ADLATSEACQQLVDEFVAKFGGIDVLINNA   93 (258)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHSSCSEEEECC
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            66654332223333       678888753

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=93.77  E-value=0.13  Score=50.00  Aligned_cols=89  Identities=18%  Similarity=0.228  Sum_probs=53.2

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      .|.+++|.|||+|.+|..+++.|...|. ++...|...-.             ..+                 ..  .  
T Consensus       168 ~l~gktiGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~-------------~~~-----------------~~--~--  212 (340)
T 4dgs_A          168 SPKGKRIGVLGLGQIGRALASRAEAFGM-SVRYWNRSTLS-------------GVD-----------------WI--A--  212 (340)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCT-------------TSC-----------------CE--E--
T ss_pred             cccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCccc-------------ccC-----------------ce--e--
Confidence            5778999999999999999999998887 47777643211             000                 00  0  


Q ss_pred             cCCCCCcchHhhhccCcEEEEccC-ChHHHHHHHHHHH---HCCCcEEEeccc
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLD-NLDARRHVNRLCL---AADVPLVESGTT  137 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~D-n~~~r~~i~~~c~---~~~~p~i~~g~~  137 (410)
                        .   ....+.++++|+|+.++. +.+++..+++...   +.+.-+|+.+..
T Consensus       213 --~---~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG  260 (340)
T 4dgs_A          213 --H---QSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARG  260 (340)
T ss_dssp             --C---SSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC
T ss_pred             --c---CCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCC
Confidence              1   113577899999999875 4556666644332   234567777643

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=93.77  E-value=0.19  Score=46.25  Aligned_cols=81  Identities=16%  Similarity=0.253  Sum_probs=50.3

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      |.+++++|.| .||||.++++.|+..|. ++.++|.+.                   .+.+.+++.+.+.. ..++..+.
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~-~~~~~~~~   63 (263)
T 3ai3_A            5 ISGKVAVITGSSSGIGLAIAEGFAKEGA-HIVLVARQV-------------------DRLHEAARSLKEKF-GVRVLEVA   63 (263)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHHH-CCCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCH-------------------HHHHHHHHHHHHhc-CCceEEEE
Confidence            5677889998 68999999999999997 577776321                   23333444444331 12455566


Q ss_pred             cCCCCCcchHhhh-------ccCcEEEEcc
Q 015243           89 ANVKDPKFNVEFF-------KQFNVVLNGL  111 (410)
Q Consensus        89 ~~i~~~~~~~~~~-------~~~DvVi~a~  111 (410)
                      .++++...-..++       .+.|+||++.
T Consensus        64 ~D~~~~~~~~~~~~~~~~~~g~id~lv~~A   93 (263)
T 3ai3_A           64 VDVATPEGVDAVVESVRSSFGGADILVNNA   93 (263)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHSSCSEEEECC
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            6665432222222       3678888854

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=93.76  E-value=0.25  Score=45.07  Aligned_cols=79  Identities=19%  Similarity=0.282  Sum_probs=50.9

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      |.+++++|.| .||||.++++.|+..|. ++.++|.+                   ..+.+.+++.+.+..  .++..+.
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~--~~~~~~~   62 (247)
T 2jah_A            5 LQGKVALITGASSGIGEATARALAAEGA-AVAIAARR-------------------VEKLRALGDELTAAG--AKVHVLE   62 (247)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTT--CCEEEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcC--CcEEEEE
Confidence            6678899997 68999999999999997 47777632                   124444555555433  3556666


Q ss_pred             cCCCCCcchHhh-------hccCcEEEEc
Q 015243           89 ANVKDPKFNVEF-------FKQFNVVLNG  110 (410)
Q Consensus        89 ~~i~~~~~~~~~-------~~~~DvVi~a  110 (410)
                      .++++...-..+       +.+.|++|++
T Consensus        63 ~Dv~~~~~~~~~~~~~~~~~g~id~lv~n   91 (247)
T 2jah_A           63 LDVADRQGVDAAVASTVEALGGLDILVNN   91 (247)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCSEEEEC
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            666543222222       2367888774

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=93.75  E-value=0.15  Score=46.60  Aligned_cols=35  Identities=31%  Similarity=0.540  Sum_probs=29.7

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +|++++++|.| .||||.++++.|+..|.. +.++|.
T Consensus         3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~-V~~~~r   38 (247)
T 3rwb_A            3 RLAGKTALVTGAAQGIGKAIAARLAADGAT-VIVSDI   38 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             CcCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            57788999998 589999999999999974 777664

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=93.75  E-value=0.16  Score=47.49  Aligned_cols=80  Identities=16%  Similarity=0.295  Sum_probs=50.6

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .|.+++++|.| .||||.++++.|+..|.. +.++|.+.                   .+.+.+++.+.+...  ++..+
T Consensus        29 ~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~-------------------~~~~~~~~~~~~~~~--~~~~~   86 (276)
T 3r1i_A           29 DLSGKRALITGASTGIGKKVALAYAEAGAQ-VAVAARHS-------------------DALQVVADEIAGVGG--KALPI   86 (276)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESSG-------------------GGGHHHHHHHHHTTC--CCEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCH-------------------HHHHHHHHHHHhcCC--eEEEE
Confidence            46788999998 689999999999999974 77777431                   223344555555443  34445


Q ss_pred             ccCCCCCcchHhhh-------ccCcEEEEc
Q 015243           88 HANVKDPKFNVEFF-------KQFNVVLNG  110 (410)
Q Consensus        88 ~~~i~~~~~~~~~~-------~~~DvVi~a  110 (410)
                      ..++++...-..++       .+.|++|++
T Consensus        87 ~~Dl~d~~~v~~~~~~~~~~~g~iD~lvnn  116 (276)
T 3r1i_A           87 RCDVTQPDQVRGMLDQMTGELGGIDIAVCN  116 (276)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCSEEEEC
T ss_pred             EcCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            55664432222232       267777774

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=93.73  E-value=0.077  Score=49.53  Aligned_cols=31  Identities=29%  Similarity=0.590  Sum_probs=25.5

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ++|+|.|+ |.+|+.+++.|. .| .+++.+|.+
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g-~~V~~~~r~   32 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PV-GNLIALDVH   32 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TT-SEEEEECTT
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cC-CeEEEeccc
Confidence            37999996 999999999999 77 457777754

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=93.73  E-value=0.18  Score=51.20  Aligned_cols=31  Identities=23%  Similarity=0.360  Sum_probs=27.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      ..+|.|||+|.+|+.++.+|+..|. +++++|
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~-~V~v~d   35 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGY-TVAIYN   35 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTC-CEEEEC
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCC-EEEEEc
Confidence            4689999999999999999999997 477776

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=93.72  E-value=0.3  Score=45.37  Aligned_cols=94  Identities=16%  Similarity=0.180  Sum_probs=57.9

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      +|.+++++|.| .||||.++++.|+..|. ++.++|.+.-..+.+.+.    .  -...+.+.+.+.+....+  ++..+
T Consensus         8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~--~~~~~   78 (277)
T 3tsc_A            8 KLEGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDIAGKLPSCVPYD----P--ASPDDLSETVRLVEAANR--RIVAA   78 (277)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSC----C--CCHHHHHHHHHHHHHTTC--CEEEE
T ss_pred             ccCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEecccccccccccc----c--cCHHHHHHHHHHHHhcCC--eEEEE
Confidence            57788899998 58999999999999997 488888543222222111    1  123345555555555543  56666


Q ss_pred             ccCCCCCcchHhh-------hccCcEEEEcc
Q 015243           88 HANVKDPKFNVEF-------FKQFNVVLNGL  111 (410)
Q Consensus        88 ~~~i~~~~~~~~~-------~~~~DvVi~a~  111 (410)
                      ..++++...-..+       +.+.|++|++.
T Consensus        79 ~~D~~~~~~v~~~~~~~~~~~g~id~lvnnA  109 (277)
T 3tsc_A           79 VVDTRDFDRLRKVVDDGVAALGRLDIIVANA  109 (277)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            6677543222222       24688888853

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=93.72  E-value=0.37  Score=46.84  Aligned_cols=119  Identities=17%  Similarity=0.223  Sum_probs=64.9

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHH-HhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC---Ce---
Q 015243           12 GAKVLMVG-AGGIGCELLKTLA-LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ---MS---   83 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa-~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~---v~---   83 (410)
                      +++|+|.| .|+||..+++.|+ ..|. +++++|...-...   .     .....  ..+.+.+.+.++...   -.   
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~---~-----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   70 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDTNH-SVVIVDSLVGTHG---K-----SDHVE--TRENVARKLQQSDGPKPPWADRY   70 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC-EEEEEECCTTTTT---C-----CTTSC--CHHHHHHHHHHSCSSCCTTTTCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhCCC-EEEEEecCCcccc---c-----ccccc--hHHHHHHHHHHhhccccccCCce
Confidence            45899998 5999999999999 8885 5777774321100   0     00000  012233333333211   12   


Q ss_pred             EEEEccCCCCCcchHhhhc--c-CcEEEEccCCh-----------------HHHHHHHHHHHHCCC-cEEEecccCccc
Q 015243           84 ITAHHANVKDPKFNVEFFK--Q-FNVVLNGLDNL-----------------DARRHVNRLCLAADV-PLVESGTTGFLG  141 (410)
Q Consensus        84 i~~~~~~i~~~~~~~~~~~--~-~DvVi~a~Dn~-----------------~~r~~i~~~c~~~~~-p~i~~g~~G~~G  141 (410)
                      ++.+..++++...-...++  + +|+||.+....                 ..-..+-+.|.+.++ .+|..++.+.+|
T Consensus        71 ~~~~~~Dl~d~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS~~v~g  149 (397)
T 1gy8_A           71 AALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFG  149 (397)
T ss_dssp             CEEEESCTTCHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTB
T ss_pred             EEEEECCCCCHHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECCHHHhC
Confidence            5556666654433334455  4 89999864311                 112334456666665 577766655444

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=93.70  E-value=0.34  Score=45.03  Aligned_cols=87  Identities=17%  Similarity=0.251  Sum_probs=53.0

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      |.+++++|.| .||||.++++.|+..|. ++.++|.+.-....+.            ...+.+++.+....  .++..+.
T Consensus         4 l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~------------~~~~~~~~~~~~~~--~~~~~~~   68 (274)
T 3e03_A            4 LSGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSAVANPKLP------------GTIHSAAAAVNAAG--GQGLALK   68 (274)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCSCCTTSC------------CCHHHHHHHHHHHT--SEEEEEE
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccchhhhhhH------------HHHHHHHHHHHhcC--CeEEEEe
Confidence            5678899998 68999999999999997 5888886543222111            11233344444443  3566666


Q ss_pred             cCCCCCcchHhh-------hccCcEEEEcc
Q 015243           89 ANVKDPKFNVEF-------FKQFNVVLNGL  111 (410)
Q Consensus        89 ~~i~~~~~~~~~-------~~~~DvVi~a~  111 (410)
                      .++++...-..+       +.+.|++|++.
T Consensus        69 ~Dv~~~~~v~~~~~~~~~~~g~iD~lvnnA   98 (274)
T 3e03_A           69 CDIREEDQVRAAVAATVDTFGGIDILVNNA   98 (274)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            666543222222       23677777753

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=93.70  E-value=0.21  Score=45.88  Aligned_cols=35  Identities=29%  Similarity=0.544  Sum_probs=29.8

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .+.+++++|.| .||||.++++.|+..|.. +.++|.
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r   40 (259)
T 4e6p_A            5 RLEGKSALITGSARGIGRAFAEAYVREGAT-VAIADI   40 (259)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            46788899998 689999999999999974 778774

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=93.68  E-value=0.14  Score=46.93  Aligned_cols=34  Identities=24%  Similarity=0.307  Sum_probs=27.4

Q ss_pred             hCCcEEEEC-CcHHHHHHHHHHHH-hCCCcEEEEeCC
Q 015243           11 KGAKVLMVG-AGGIGCELLKTLAL-SGFQDIHIIDMD   45 (410)
Q Consensus        11 ~~~~VlvvG-~GgiG~ev~knLa~-~Gv~~i~liD~D   45 (410)
                      ++++|+|.| .|+||.++++.|+. .|. ++.++|.+
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~   38 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARD   38 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCC
Confidence            356788887 78999999999999 886 57777643

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=93.68  E-value=0.11  Score=49.19  Aligned_cols=33  Identities=15%  Similarity=0.274  Sum_probs=28.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ..+|.|||+|.+|..++++|+..|. +++++|.+
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~-~V~~~dr~   47 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPG-GVTVYDIR   47 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTT-CEEEECSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            4689999999999999999999996 58887744

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=93.67  E-value=0.18  Score=49.30  Aligned_cols=76  Identities=12%  Similarity=0.142  Sum_probs=53.3

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHH-hCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           11 KGAKVLMVGAGGIGCELLKTLAL-SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~-~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      ..++++|||+|+.|..+++.|.. .++.++.+.|.                   ...|++.+++.+... +++.+.... 
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r-------------------~~~~a~~la~~~~~~-~g~~~~~~~-  186 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDT-------------------DPLATAKLIANLKEY-SGLTIRRAS-  186 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECS-------------------SHHHHHHHHHHHTTC-TTCEEEECS-
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcC-------------------CHHHHHHHHHHHHhc-cCceEEEeC-
Confidence            46789999999999999999864 47888988762                   234666666665442 344443321 


Q ss_pred             CCCCCcchHhhhccCcEEEEccCC
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLDN  113 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~Dn  113 (410)
                            ...+.+.++|+|++|+-+
T Consensus       187 ------~~~eav~~aDiVi~aTps  204 (350)
T 1x7d_A          187 ------SVAEAVKGVDIITTVTAD  204 (350)
T ss_dssp             ------SHHHHHTTCSEEEECCCC
T ss_pred             ------CHHHHHhcCCEEEEeccC
Confidence                  124567889999999875

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=93.64  E-value=0.22  Score=46.75  Aligned_cols=83  Identities=20%  Similarity=0.294  Sum_probs=53.5

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC---CCCeE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR---PQMSI   84 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~n---p~v~i   84 (410)
                      +|.+++|+|.| .|+||.++++.|+..|. ++.++|.+.                   .+.+.+++.+....   ...++
T Consensus        15 ~l~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~   74 (303)
T 1yxm_A           15 LLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKL-------------------ERLKSAADELQANLPPTKQARV   74 (303)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTSCTTCCCCE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhhccccCCccE
Confidence            46778899997 68999999999999996 477776321                   23444445554421   13456


Q ss_pred             EEEccCCCCCcchHhhh-------ccCcEEEEcc
Q 015243           85 TAHHANVKDPKFNVEFF-------KQFNVVLNGL  111 (410)
Q Consensus        85 ~~~~~~i~~~~~~~~~~-------~~~DvVi~a~  111 (410)
                      ..+..++++...-..++       .+.|+||++.
T Consensus        75 ~~~~~D~~~~~~v~~~~~~~~~~~g~id~li~~A  108 (303)
T 1yxm_A           75 IPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNG  108 (303)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEEecCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            66777775432222333       3589988854

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=93.63  E-value=0.24  Score=46.08  Aligned_cols=27  Identities=22%  Similarity=0.380  Sum_probs=24.1

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGF   36 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv   36 (410)
                      ++.++|+|.| .|.+|..+++.|...|.
T Consensus         4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~   31 (319)
T 4b8w_A            4 FQSMRILVTGGSGLVGKAIQKVVADGAG   31 (319)
T ss_dssp             CCCCEEEEETCSSHHHHHHHHHHHTTTC
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhcCC
Confidence            4578999998 59999999999999986

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=93.63  E-value=0.11  Score=48.79  Aligned_cols=81  Identities=15%  Similarity=0.211  Sum_probs=51.2

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .|.+++++|.| .||||.++++.|+..|.. +.++|.+                   ..+.+.+++.+.+.  ..++..+
T Consensus         5 ~l~gk~vlVTGas~GIG~aia~~la~~G~~-V~~~~r~-------------------~~~~~~~~~~~~~~--~~~~~~~   62 (280)
T 3tox_A            5 RLEGKIAIVTGASSGIGRAAALLFAREGAK-VVVTARN-------------------GNALAELTDEIAGG--GGEAAAL   62 (280)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEECCSC-------------------HHHHHHHHHHHTTT--TCCEEEC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEECC-------------------HHHHHHHHHHHHhc--CCcEEEE
Confidence            46778888887 589999999999999975 7776643                   12344444444432  3356666


Q ss_pred             ccCCCCCcchHhhh-------ccCcEEEEcc
Q 015243           88 HANVKDPKFNVEFF-------KQFNVVLNGL  111 (410)
Q Consensus        88 ~~~i~~~~~~~~~~-------~~~DvVi~a~  111 (410)
                      ..++++...-..++       .+.|++|++.
T Consensus        63 ~~Dv~~~~~v~~~~~~~~~~~g~iD~lvnnA   93 (280)
T 3tox_A           63 AGDVGDEALHEALVELAVRRFGGLDTAFNNA   93 (280)
T ss_dssp             CCCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            66665432222222       3678888753

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=93.62  E-value=0.098  Score=49.52  Aligned_cols=81  Identities=17%  Similarity=0.293  Sum_probs=50.6

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .|.+++++|.| .||||.++++.|+..|. ++.++|.+.                   .+.+.+++.+.+..+ .++..+
T Consensus        38 ~l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~-~~~~~~   96 (293)
T 3rih_A           38 DLSARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSP-------------------RELSSVTAELGELGA-GNVIGV   96 (293)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSG-------------------GGGHHHHHHHTTSSS-SCEEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHHHHhhCC-CcEEEE
Confidence            35677888887 68999999999999997 588887442                   123334444444432 355666


Q ss_pred             ccCCCCCcchHhh-------hccCcEEEEc
Q 015243           88 HANVKDPKFNVEF-------FKQFNVVLNG  110 (410)
Q Consensus        88 ~~~i~~~~~~~~~-------~~~~DvVi~a  110 (410)
                      ..++++...-..+       +.+.|++|++
T Consensus        97 ~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnn  126 (293)
T 3rih_A           97 RLDVSDPGSCADAARTVVDAFGALDVVCAN  126 (293)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             EEeCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            6666543222222       3356888775

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=93.62  E-value=0.23  Score=45.33  Aligned_cols=82  Identities=15%  Similarity=0.231  Sum_probs=51.8

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .|.+++|+|.| .|+||.++++.|+..|.. +.++|..                  ...+.+.+.+.+.+..  .++..+
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~-V~~~~r~------------------~~~~~~~~~~~l~~~~--~~~~~~   62 (261)
T 1gee_A            4 DLEGKVVVITGSSTGLGKSMAIRFATEKAK-VVVNYRS------------------KEDEANSVLEEIKKVG--GEAIAV   62 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESS------------------CHHHHHHHHHHHHHTT--CEEEEE
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEcCC------------------ChHHHHHHHHHHHhcC--CceEEE
Confidence            36778899887 789999999999999964 7776631                  0123444445555443  355666


Q ss_pred             ccCCCCCcchHhhh-------ccCcEEEEcc
Q 015243           88 HANVKDPKFNVEFF-------KQFNVVLNGL  111 (410)
Q Consensus        88 ~~~i~~~~~~~~~~-------~~~DvVi~a~  111 (410)
                      ..++++......++       .+.|+||++.
T Consensus        63 ~~D~~~~~~~~~~~~~~~~~~g~id~li~~A   93 (261)
T 1gee_A           63 KGDVTVESDVINLVQSAIKEFGKLDVMINNA   93 (261)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            66665432222233       2678888853

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=93.61  E-value=0.28  Score=44.34  Aligned_cols=79  Identities=11%  Similarity=0.078  Sum_probs=49.4

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCC------cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeE
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQ------DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSI   84 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~------~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i   84 (410)
                      +++|+|.| .|+||.++++.|+..|..      ++.++|.+.                   .+.+.+.+.+...  ..++
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~-------------------~~~~~~~~~~~~~--~~~~   60 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTA-------------------ADLEKISLECRAE--GALT   60 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCH-------------------HHHHHHHHHHHTT--TCEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCH-------------------HHHHHHHHHHHcc--CCee
Confidence            46788887 689999999999999985      687776321                   2333344444432  3356


Q ss_pred             EEEccCCCCCcchHhhh-------ccCcEEEEcc
Q 015243           85 TAHHANVKDPKFNVEFF-------KQFNVVLNGL  111 (410)
Q Consensus        85 ~~~~~~i~~~~~~~~~~-------~~~DvVi~a~  111 (410)
                      ..+..++++...-..++       .+.|+||++.
T Consensus        61 ~~~~~D~~~~~~v~~~~~~~~~~~g~id~li~~A   94 (244)
T 2bd0_A           61 DTITADISDMADVRRLTTHIVERYGHIDCLVNNA   94 (244)
T ss_dssp             EEEECCTTSHHHHHHHHHHHHHHTSCCSEEEECC
T ss_pred             eEEEecCCCHHHHHHHHHHHHHhCCCCCEEEEcC
Confidence            66666665432222222       3678888753

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=93.57  E-value=0.24  Score=44.63  Aligned_cols=79  Identities=18%  Similarity=0.300  Sum_probs=50.5

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      .++++|.| .||||.++++.|+..|.. +.++|.+                   ..+.+.+.+.+.+.. ..++..+..+
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~-V~~~~r~-------------------~~~~~~~~~~~~~~~-~~~~~~~~~D   60 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYA-LALGARS-------------------VDRLEKIAHELMQEQ-GVEVFYHHLD   60 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESC-------------------HHHHHHHHHHHHHHH-CCCEEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC-------------------HHHHHHHHHHHHhhc-CCeEEEEEec
Confidence            46788887 689999999999999975 7777632                   134444555554222 3466666667


Q ss_pred             CCCCcchHhhh-------ccCcEEEEcc
Q 015243           91 VKDPKFNVEFF-------KQFNVVLNGL  111 (410)
Q Consensus        91 i~~~~~~~~~~-------~~~DvVi~a~  111 (410)
                      +++...-..++       .+.|++|++.
T Consensus        61 ~~~~~~v~~~~~~~~~~~g~id~li~~A   88 (235)
T 3l77_A           61 VSKAESVEEFSKKVLERFGDVDVVVANA   88 (235)
T ss_dssp             TTCHHHHHHHCC-HHHHHSSCSEEEECC
T ss_pred             cCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            75443222333       3678888853

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=93.57  E-value=0.17  Score=46.75  Aligned_cols=32  Identities=31%  Similarity=0.492  Sum_probs=24.9

Q ss_pred             HHHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCc
Q 015243            7 LEAIKGAKVLMVG-AGGIGCELLKTLALSGFQD   38 (410)
Q Consensus         7 q~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~   38 (410)
                      +..+++++|+|.| .||||.++++.|+..|..-
T Consensus        21 ~~~l~~k~vlVTGas~gIG~~la~~l~~~G~~v   53 (267)
T 4iiu_A           21 QSNAMSRSVLVTGASKGIGRAIARQLAADGFNI   53 (267)
T ss_dssp             ----CCCEEEETTTTSHHHHHHHHHHHHTTCEE
T ss_pred             ccccCCCEEEEECCCChHHHHHHHHHHHCCCEE
Confidence            3467788899987 6899999999999999763

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=93.55  E-value=0.17  Score=46.01  Aligned_cols=62  Identities=21%  Similarity=0.245  Sum_probs=42.5

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      |++++++|.| .||||.++++.|+..|.. +.++|.+                   ..+.+.+.+.+++..+  ++..+.
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~~G~~-v~~~~r~-------------------~~~~~~~~~~~~~~~~--~~~~~~   60 (247)
T 3lyl_A            3 LNEKVALVTGASRGIGFEVAHALASKGAT-VVGTATS-------------------QASAEKFENSMKEKGF--KARGLV   60 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESS-------------------HHHHHHHHHHHHHTTC--CEEEEE
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC-------------------HHHHHHHHHHHHhcCC--ceEEEE
Confidence            5677888887 689999999999999964 7777632                   2345555566665543  455555


Q ss_pred             cCCCC
Q 015243           89 ANVKD   93 (410)
Q Consensus        89 ~~i~~   93 (410)
                      .++++
T Consensus        61 ~D~~~   65 (247)
T 3lyl_A           61 LNISD   65 (247)
T ss_dssp             CCTTC
T ss_pred             ecCCC
Confidence            55543

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=93.55  E-value=0.37  Score=45.83  Aligned_cols=107  Identities=11%  Similarity=0.112  Sum_probs=64.3

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCC-CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv-~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      ++|+|.| .|.||..+++.|+..|- -+++++|...-.. +.  .                  .+..+. .-.++.+..+
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~-~~--~------------------~~~~~~-~~~~~~~~~D   62 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAG-NK--A------------------NLEAIL-GDRVELVVGD   62 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTC-CG--G------------------GTGGGC-SSSEEEEECC
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCC-Ch--h------------------HHhhhc-cCCeEEEECC
Confidence            5899998 69999999999999943 3677777532100 00  0                  011111 1245556666


Q ss_pred             CCCCcchHhhhccCcEEEEccCCh-----------------HHHHHHHHHHHHCCCcEEEecccCccc
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLDNL-----------------DARRHVNRLCLAADVPLVESGTTGFLG  141 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~Dn~-----------------~~r~~i~~~c~~~~~p~i~~g~~G~~G  141 (410)
                      +++...-...++++|+||.+....                 ..-..+-+.|...+..+|..++.+.+|
T Consensus        63 l~d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~v~~SS~~vyg  130 (348)
T 1oc2_A           63 IADAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYG  130 (348)
T ss_dssp             TTCHHHHHHHHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGGC
T ss_pred             CCCHHHHHHHhhcCCEEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCCeEEEecccceeC
Confidence            655433345678889999864321                 112344466666667888877665554

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=93.53  E-value=0.061  Score=54.22  Aligned_cols=35  Identities=23%  Similarity=0.550  Sum_probs=32.8

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCC--CcEEEEe
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGF--QDIHIID   43 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv--~~i~liD   43 (410)
                      .|.+++|+|+|+||.|..+++.|...|+  ++|+++|
T Consensus       183 ~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd  219 (439)
T 2dvm_A          183 KISEITLALFGAGAAGFATLRILTEAGVKPENVRVVE  219 (439)
T ss_dssp             CTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             CccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEE
Confidence            3678899999999999999999999999  8999998

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=93.52  E-value=0.13  Score=49.50  Aligned_cols=34  Identities=32%  Similarity=0.465  Sum_probs=30.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCC-CcEEEEeCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMD   45 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~D   45 (410)
                      ..||.|+|+|.+|..++..|+..|. +++.|+|-|
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~   41 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVF   41 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            4689999999999999999999886 679999954

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=93.52  E-value=0.12  Score=49.58  Aligned_cols=35  Identities=17%  Similarity=0.468  Sum_probs=29.4

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ....+|.|||+|.+|..++++|+..|. .++++|.+
T Consensus        29 ~~~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~   63 (320)
T 4dll_A           29 PYARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRT   63 (320)
T ss_dssp             CCCSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSC
T ss_pred             cCCCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCC
Confidence            345699999999999999999999996 47777643

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=93.52  E-value=0.15  Score=46.92  Aligned_cols=64  Identities=17%  Similarity=0.269  Sum_probs=45.8

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHH---hCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEE
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLAL---SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSIT   85 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~---~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~   85 (410)
                      |.+++++|.| .||||.++++.|+.   .|. ++.++|.+                   ..+.+.+++.+.+.+|..++.
T Consensus         4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~   63 (259)
T 1oaa_A            4 LGCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARS-------------------ESMLRQLKEELGAQQPDLKVV   63 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESC-------------------HHHHHHHHHHHHHHCTTSEEE
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHhhcCCC-eEEEEeCC-------------------HHHHHHHHHHHHhhCCCCeEE
Confidence            5667788887 68999999999998   786 57777632                   134555666666666666777


Q ss_pred             EEccCCCC
Q 015243           86 AHHANVKD   93 (410)
Q Consensus        86 ~~~~~i~~   93 (410)
                      .+..++++
T Consensus        64 ~~~~Dv~~   71 (259)
T 1oaa_A           64 LAAADLGT   71 (259)
T ss_dssp             EEECCTTS
T ss_pred             EEecCCCC
Confidence            77777654

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=93.50  E-value=0.35  Score=46.09  Aligned_cols=116  Identities=20%  Similarity=0.299  Sum_probs=62.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC-
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV-   91 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i-   91 (410)
                      +||.+||+|..|..+++||+..|.. +++.|.+.-....+.        +.|-..+...++.++.  .++-+......- 
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~-v~v~dr~~~~~~~l~--------~~Ga~~a~s~~e~~~~--~dvv~~~l~~~~~   72 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYL-LNVFDLVQSAVDGLV--------AAGASAARSARDAVQG--ADVVISMLPASQH   72 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCE-EEEECSSHHHHHHHH--------HTTCEECSSHHHHHTT--CSEEEECCSCHHH
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCe-EEEEcCCHHHHHHHH--------HcCCEEcCCHHHHHhc--CCceeecCCchHH
Confidence            4799999999999999999999974 777663321111110        0111111112222211  222222221110 


Q ss_pred             -C----CCcchHhhhccCcEEEEc-cCChHHHHHHHHHHHHCCCcEEEecccCc
Q 015243           92 -K----DPKFNVEFFKQFNVVLNG-LDNLDARRHVNRLCLAADVPLVESGTTGF  139 (410)
Q Consensus        92 -~----~~~~~~~~~~~~DvVi~a-~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~  139 (410)
                       .    ...-.....+.-++||++ +-+++.-+.+.+.+...++-|+++.+.|.
T Consensus        73 v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~lDaPVsGg  126 (300)
T 3obb_A           73 VEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGG  126 (300)
T ss_dssp             HHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESC
T ss_pred             HHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCCCCC
Confidence             0    000000112334677774 55677777788888888999999877663

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=93.48  E-value=0.36  Score=44.99  Aligned_cols=96  Identities=16%  Similarity=0.176  Sum_probs=56.6

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      +|.+++++|.| .||||.++++.|+..|.. +.++|.+.-....+...-+ .  .-...+.+.+++.+....  .++..+
T Consensus         8 ~l~~k~~lVTGas~gIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~--~~~~~~   81 (286)
T 3uve_A            8 RVEGKVAFVTGAARGQGRSHAVRLAQEGAD-IIAVDICKPIRAGVVDTAI-P--ASTPEDLAETADLVKGHN--RRIVTA   81 (286)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCSBTTBCCCSS-C--CCCHHHHHHHHHHHHTTT--CCEEEE
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEecccccccccccccc-c--cCCHHHHHHHHHHHhhcC--CceEEE
Confidence            46788899998 579999999999999965 8888865321111111100 0  011334455555555544  356666


Q ss_pred             ccCCCCCcchHhhh-------ccCcEEEEc
Q 015243           88 HANVKDPKFNVEFF-------KQFNVVLNG  110 (410)
Q Consensus        88 ~~~i~~~~~~~~~~-------~~~DvVi~a  110 (410)
                      ..++++...-..++       .+.|++|++
T Consensus        82 ~~Dv~~~~~v~~~~~~~~~~~g~id~lv~n  111 (286)
T 3uve_A           82 EVDVRDYDALKAAVDSGVEQLGRLDIIVAN  111 (286)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             EcCCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence            66775432222222       367888875

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=93.48  E-value=0.27  Score=45.35  Aligned_cols=35  Identities=29%  Similarity=0.482  Sum_probs=29.5

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .+++++|+|.| .||||.++++.|+..|. ++.++|.
T Consensus        13 ~l~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r   48 (278)
T 2bgk_A           13 RLQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADI   48 (278)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cccCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcC
Confidence            46788899998 68999999999999996 5777763

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=93.44  E-value=0.097  Score=48.69  Aligned_cols=36  Identities=25%  Similarity=0.444  Sum_probs=29.7

Q ss_pred             HHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ..|.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus        23 ~~l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r   59 (266)
T 3grp_A           23 FKLTGRKALVTGATGGIGEAIARCFHAQGA-IVGLHGT   59 (266)
T ss_dssp             TCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            356788888887 68999999999999996 4777764

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=93.44  E-value=0.27  Score=46.10  Aligned_cols=35  Identities=23%  Similarity=0.342  Sum_probs=28.2

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .+.++.++|.| .||||.++++.|+..|. ++.++|.
T Consensus        25 ~~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r   60 (283)
T 3v8b_A           25 NQPSPVALITGAGSGIGRATALALAADGV-TVGALGR   60 (283)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            46677888888 68999999999999997 5777774

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=93.42  E-value=0.17  Score=45.60  Aligned_cols=35  Identities=20%  Similarity=0.116  Sum_probs=27.9

Q ss_pred             hCCcEEEEC-CcHHHHHHHHHHHHhC-CCcEEEEeCC
Q 015243           11 KGAKVLMVG-AGGIGCELLKTLALSG-FQDIHIIDMD   45 (410)
Q Consensus        11 ~~~~VlvvG-~GgiG~ev~knLa~~G-v~~i~liD~D   45 (410)
                      ..++|+|.| .|++|.++++.|+..| -.++++++.+
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~   39 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRS   39 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence            457899998 6999999999999995 2457777643

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=93.41  E-value=0.17  Score=47.03  Aligned_cols=35  Identities=20%  Similarity=0.256  Sum_probs=28.6

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .|+++.++|.| .||||.++++.|+..|. ++.++|.
T Consensus        25 ~l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r   60 (270)
T 3ftp_A           25 TLDKQVAIVTGASRGIGRAIALELARRGA-MVIGTAT   60 (270)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            46677788887 68999999999999997 5777763

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=93.40  E-value=0.14  Score=50.16  Aligned_cols=33  Identities=24%  Similarity=0.417  Sum_probs=28.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ..+|.|+|+|.+|+.++..|+..|. .++++|.+
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~-~V~l~~r~   61 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQ-KVRLWSYE   61 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTC-CEEEECSC
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            4689999999999999999999995 48887754

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=93.39  E-value=0.17  Score=46.72  Aligned_cols=82  Identities=20%  Similarity=0.331  Sum_probs=50.4

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      +.+++++|.| .||||.++++.|+..|. ++.++|.+.                   .+.+.+.+.+.+..+..++..+.
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~~   64 (267)
T 2gdz_A            5 VNGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNL-------------------EAGVQCKAALHEQFEPQKTLFIQ   64 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHTTTSCGGGEEEEE
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHHHHhhcCCCceEEEe
Confidence            4567889998 68999999999999996 477776321                   22333344444333333566666


Q ss_pred             cCCCCCcchHhh-------hccCcEEEEcc
Q 015243           89 ANVKDPKFNVEF-------FKQFNVVLNGL  111 (410)
Q Consensus        89 ~~i~~~~~~~~~-------~~~~DvVi~a~  111 (410)
                      .++++...-...       +.+.|+||++.
T Consensus        65 ~D~~~~~~v~~~~~~~~~~~g~id~lv~~A   94 (267)
T 2gdz_A           65 CDVADQQQLRDTFRKVVDHFGRLDILVNNA   94 (267)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            666543222222       23578888864

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=93.37  E-value=0.26  Score=45.86  Aligned_cols=80  Identities=19%  Similarity=0.343  Sum_probs=50.8

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      |.+++++|.| .||||.++++.|+..|.. +.++|...                  ..+.+.+++.+++..+  ++..+.
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~~~~------------------~~~~~~~~~~l~~~~~--~~~~~~   87 (271)
T 3v2g_A           29 LAGKTAFVTGGSRGIGAAIAKRLALEGAA-VALTYVNA------------------AERAQAVVSEIEQAGG--RAVAIR   87 (271)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSC------------------HHHHHHHHHHHHHTTC--CEEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCC------------------HHHHHHHHHHHHhcCC--cEEEEE
Confidence            4567889998 589999999999999975 66665221                  2345555666665543  455566


Q ss_pred             cCCCCCcchHhhh-------ccCcEEEEc
Q 015243           89 ANVKDPKFNVEFF-------KQFNVVLNG  110 (410)
Q Consensus        89 ~~i~~~~~~~~~~-------~~~DvVi~a  110 (410)
                      .++++...-..++       .+.|++|++
T Consensus        88 ~Dv~d~~~v~~~~~~~~~~~g~iD~lvnn  116 (271)
T 3v2g_A           88 ADNRDAEAIEQAIRETVEALGGLDILVNS  116 (271)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCcEEEEC
Confidence            6665432222222       367777775

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=93.37  E-value=0.14  Score=47.24  Aligned_cols=80  Identities=19%  Similarity=0.330  Sum_probs=50.1

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .|++++++|.| .||||.++++.|+..|.. +.++|.+                   ..+.+.+++.+.+..  .++..+
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~-------------------~~~~~~~~~~~~~~~--~~~~~~   60 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGAR-VVITGRT-------------------KEKLEEAKLEIEQFP--GQILTV   60 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESC-------------------HHHHHHHHHHHCCST--TCEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCC-------------------HHHHHHHHHHHHhcC--CcEEEE
Confidence            46778888887 589999999999999974 7777743                   233444445544433  245556


Q ss_pred             ccCCCCCcchHhhh-------ccCcEEEEc
Q 015243           88 HANVKDPKFNVEFF-------KQFNVVLNG  110 (410)
Q Consensus        88 ~~~i~~~~~~~~~~-------~~~DvVi~a  110 (410)
                      ..++++...-..++       .+.|++|++
T Consensus        61 ~~Dv~~~~~v~~~~~~~~~~~g~id~lv~n   90 (257)
T 3imf_A           61 QMDVRNTDDIQKMIEQIDEKFGRIDILINN   90 (257)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             EccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            66665432222222       356777764

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=93.36  E-value=0.34  Score=45.84  Aligned_cols=36  Identities=25%  Similarity=0.321  Sum_probs=27.6

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .=.+++|+|.| .|.||..+++.|+..|. +++++|.+
T Consensus        11 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~   47 (335)
T 1rpn_A           11 GSMTRSALVTGITGQDGAYLAKLLLEKGY-RVHGLVAR   47 (335)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             cccCCeEEEECCCChHHHHHHHHHHHCCC-eEEEEeCC
Confidence            44678999998 59999999999999995 67777743

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=93.34  E-value=0.1  Score=47.85  Aligned_cols=35  Identities=31%  Similarity=0.490  Sum_probs=29.5

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +++++|+|.| .|+||.++++.|+..|. ++.++|.+
T Consensus         5 ~~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~   40 (264)
T 2pd6_A            5 LRSALALVTGAGSGIGRAVSVRLAGEGA-TVAACDLD   40 (264)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5678899997 68999999999999996 58887743

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=93.33  E-value=0.18  Score=46.58  Aligned_cols=84  Identities=13%  Similarity=0.258  Sum_probs=54.8

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .|.+++++|.| .||||.++++.|+..|.. +.++|...                ....+.+.+++.+++..  .++..+
T Consensus         8 ~l~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~~r~~----------------~~~~~~~~~~~~~~~~~--~~~~~~   68 (262)
T 3ksu_A            8 DLKNKVIVIAGGIKNLGALTAKTFALESVN-LVLHYHQA----------------KDSDTANKLKDELEDQG--AKVALY   68 (262)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHTTSSCE-EEEEESCG----------------GGHHHHHHHHHHHHTTT--CEEEEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEecCc----------------cCHHHHHHHHHHHHhcC--CcEEEE
Confidence            35678899998 689999999999999975 66665311                12234555566665543  467777


Q ss_pred             ccCCCCCcchHhhh-------ccCcEEEEcc
Q 015243           88 HANVKDPKFNVEFF-------KQFNVVLNGL  111 (410)
Q Consensus        88 ~~~i~~~~~~~~~~-------~~~DvVi~a~  111 (410)
                      ..++++...-..++       .+.|++|++.
T Consensus        69 ~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnA   99 (262)
T 3ksu_A           69 QSDLSNEEEVAKLFDFAEKEFGKVDIAINTV   99 (262)
T ss_dssp             ECCCCSHHHHHHHHHHHHHHHCSEEEEEECC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            77776543222333       3678888853

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=93.33  E-value=0.32  Score=45.30  Aligned_cols=81  Identities=14%  Similarity=0.229  Sum_probs=51.2

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .+.+++++|.| .||||.++++.|+..|. ++.++|.+.                   .+.+.+++.+++...  ++..+
T Consensus        19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~--~~~~~   76 (277)
T 2rhc_B           19 TQDSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGE-------------------EGLRTTLKELREAGV--EADGR   76 (277)
T ss_dssp             CTTSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTTC--CEEEE
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcCC--ceEEE
Confidence            36678899997 68999999999999996 477776331                   233444455544432  45556


Q ss_pred             ccCCCCCcchHhhh-------ccCcEEEEcc
Q 015243           88 HANVKDPKFNVEFF-------KQFNVVLNGL  111 (410)
Q Consensus        88 ~~~i~~~~~~~~~~-------~~~DvVi~a~  111 (410)
                      ..++++...-..++       .+.|+||++.
T Consensus        77 ~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~~A  107 (277)
T 2rhc_B           77 TCDVRSVPEIEALVAAVVERYGPVDVLVNNA  107 (277)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHTCSCSEEEECC
T ss_pred             ECCCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            66665432222222       3678888753

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=93.31  E-value=0.15  Score=47.30  Aligned_cols=35  Identities=20%  Similarity=0.305  Sum_probs=28.7

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ++.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         3 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   38 (278)
T 1spx_A            3 RFAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGR   38 (278)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            35677888887 68999999999999996 5777764

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=93.30  E-value=0.07  Score=50.02  Aligned_cols=33  Identities=27%  Similarity=0.457  Sum_probs=30.1

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      +.+++++|+|+||+|..+++.|+..| .+++++|
T Consensus       117 l~~k~vlViGaGg~g~a~a~~L~~~G-~~V~v~~  149 (271)
T 1nyt_A          117 RPGLRILLIGAGGASRGVLLPLLSLD-CAVTITN  149 (271)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEE
Confidence            46789999999999999999999999 7899876

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=93.27  E-value=0.33  Score=44.69  Aligned_cols=29  Identities=21%  Similarity=0.295  Sum_probs=25.1

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      +|.|||+|.+|+.+++.|+..|. ++++.|
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~-~V~~~~   30 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGV-EVVTSL   30 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC-EEEECC
T ss_pred             eEEEEechHHHHHHHHHHHHCCC-eEEEeC
Confidence            79999999999999999999996 466643

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=93.26  E-value=0.2  Score=46.32  Aligned_cols=39  Identities=15%  Similarity=0.259  Sum_probs=31.9

Q ss_pred             HHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCcc
Q 015243            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTI   47 (410)
Q Consensus         8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~V   47 (410)
                      .++++++|+|.| .||||.++++.|+..|. ++.++|.+.-
T Consensus        24 ~~~~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~   63 (260)
T 3un1_A           24 MRNQQKVVVITGASQGIGAGLVRAYRDRNY-RVVATSRSIK   63 (260)
T ss_dssp             HHTTCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCC
T ss_pred             hCcCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChh
Confidence            456778888887 68999999999999997 5888886543

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=93.23  E-value=0.27  Score=48.63  Aligned_cols=110  Identities=15%  Similarity=0.143  Sum_probs=64.2

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC-------CCeE
Q 015243           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP-------QMSI   84 (410)
Q Consensus        13 ~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np-------~v~i   84 (410)
                      ++|+|.|+ |+||.++++.|+..|. ++.+++...               + .....+.+.+.+.+..+       ..++
T Consensus        70 ~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~R~~---------------~-~~~~~~~l~~~l~~~~~~~~~~~~~~~v  132 (427)
T 4f6c_A           70 GNTLLTGATGFLGAYLIEALQGYSH-RIYCFIRAD---------------N-EEIAWYKLMTNLNDYFSEETVEMMLSNI  132 (427)
T ss_dssp             EEEEEECTTSHHHHHHHHHHTTTEE-EEEEEEECS---------------S-HHHHHHHHHHHHHHHSCHHHHHHHHTTE
T ss_pred             CEEEEecCCcHHHHHHHHHHHcCCC-EEEEEECCC---------------C-hHHHHHHHHHHHHHhccccccccccCce
Confidence            48999995 9999999999977775 466654211               0 00112223333333221       1356


Q ss_pred             EEEccCCCC-CcchHhhhccCcEEEEccC--------------ChHHHHHHHHHHHHCCCcEEEecccCccce
Q 015243           85 TAHHANVKD-PKFNVEFFKQFNVVLNGLD--------------NLDARRHVNRLCLAADVPLVESGTTGFLGQ  142 (410)
Q Consensus        85 ~~~~~~i~~-~~~~~~~~~~~DvVi~a~D--------------n~~~r~~i~~~c~~~~~p~i~~g~~G~~G~  142 (410)
                      ..+..++++ ..+.  .+.++|+||.+..              |...-..+-+.|......++..++.+. |.
T Consensus       133 ~~v~~Dl~d~~~l~--~~~~~d~Vih~A~~~~~~~~~~~~~~~Nv~g~~~l~~aa~~~~~~~v~~SS~~~-G~  202 (427)
T 4f6c_A          133 EVIVGDFECMDDVV--LPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISV-GT  202 (427)
T ss_dssp             EEEEECC---CCCC--CSSCCSEEEECCCCC-------CHHHHHHHHHHHHHHHHHHTTCEEEEEEEGGG-GS
T ss_pred             EEEeCCCCCcccCC--CcCCCCEEEECCcccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEECchHh-CC
Confidence            666667754 2232  5678999998643              222234556667776678888777665 54

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=93.22  E-value=0.3  Score=44.10  Aligned_cols=33  Identities=24%  Similarity=0.442  Sum_probs=27.6

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      +++++|+|.| .|+||.++++.|+..|. ++.++|
T Consensus         3 l~~~~vlItGasggiG~~~a~~l~~~G~-~V~~~~   36 (247)
T 2hq1_A            3 LKGKTAIVTGSSRGLGKAIAWKLGNMGA-NIVLNG   36 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEc
Confidence            5678899987 68999999999999996 577764

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=93.20  E-value=0.14  Score=49.44  Aligned_cols=92  Identities=14%  Similarity=0.171  Sum_probs=54.3

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCC------CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHH--hhCCCC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGF------QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVL--KFRPQM   82 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv------~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~--~~np~v   82 (410)
                      ..++|.|||+|.+|+.++..|+..|.      .+++++|.+.-              ..++.+++.+.+.-.  ...|+.
T Consensus         7 ~~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~--------------~~~~~~~~~l~~~~~~~~~~~~~   72 (354)
T 1x0v_A            7 ASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED--------------IGGKKLTEIINTQHENVKYLPGH   72 (354)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB--------------SSSSBHHHHHHHHSCCTTTSTTC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh--------------hhhhHHHHHHHhcCcccccCCcc
Confidence            34689999999999999999999983      46888875421              012334444433210  011111


Q ss_pred             ----eEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHH
Q 015243           83 ----SITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL  123 (410)
Q Consensus        83 ----~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~  123 (410)
                          .+...     .  ...+...++|+||.|+-....+..+.++
T Consensus        73 ~~~~~~~~~-----~--~~~~~~~~aD~Vilav~~~~~~~v~~~i  110 (354)
T 1x0v_A           73 KLPPNVVAV-----P--DVVQAAEDADILIFVVPHQFIGKICDQL  110 (354)
T ss_dssp             CCCTTEEEE-----S--SHHHHHTTCSEEEECCCGGGHHHHHHHH
T ss_pred             cCccCeEEE-----c--CHHHHHcCCCEEEEeCCHHHHHHHHHHH
Confidence                11111     0  1224567899999999765555555444

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=93.19  E-value=0.2  Score=48.15  Aligned_cols=88  Identities=14%  Similarity=0.049  Sum_probs=60.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      +.+|+|+|+|.+|..+++.|...|.  ++++|.|.                   .+.+ ++    +  .+  +....++.
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~--v~vid~~~-------------------~~~~-~~----~--~~--~~~i~gd~  164 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV--FVLAEDEN-------------------VRKK-VL----R--SG--ANFVHGDP  164 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE--EEEESCGG-------------------GHHH-HH----H--TT--CEEEESCT
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc--EEEEeCCh-------------------hhhh-HH----h--CC--cEEEEeCC
Confidence            4589999999999999999999887  88888543                   1222 22    2  22  34455555


Q ss_pred             CCCcchH-hhhccCcEEEEccCChHHHHHHHHHHHHCCC
Q 015243           92 KDPKFNV-EFFKQFNVVLNGLDNLDARRHVNRLCLAADV  129 (410)
Q Consensus        92 ~~~~~~~-~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~  129 (410)
                      ++...-. .-++++|.|+.++++.+....+-..+++.+.
T Consensus       165 ~~~~~L~~a~i~~a~~vi~~~~~d~~n~~~~~~ar~~~~  203 (336)
T 1lnq_A          165 TRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDE  203 (336)
T ss_dssp             TSHHHHHHTCSTTEEEEEECCSSHHHHHHHHHHHHTTCT
T ss_pred             CCHHHHHhcChhhccEEEEcCCccHHHHHHHHHHHHHCC
Confidence            4432222 2267899999999888777777777777654

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=93.19  E-value=0.21  Score=46.62  Aligned_cols=37  Identities=16%  Similarity=0.338  Sum_probs=27.5

Q ss_pred             HHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ..+.++.++|.| .||||.++++.|+..|. ++.++|.+
T Consensus        24 ~~~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~   61 (272)
T 4dyv_A           24 SKTGKKIAIVTGAGSGVGRAVAVALAGAGY-GVALAGRR   61 (272)
T ss_dssp             ----CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            456677788887 68999999999999997 48887743

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=93.17  E-value=0.14  Score=47.15  Aligned_cols=96  Identities=13%  Similarity=0.196  Sum_probs=57.0

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        13 ~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      ++|+|.|+ |+||+.+++.|+..|. +++++|.+.-.  .+           .               +  .++.+..++
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~--~~-----------~---------------~--~~~~~~~Dl   51 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAH-EVRLSDIVDLG--AA-----------E---------------A--HEEIVACDL   51 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEE-EEEECCSSCCC--CC-----------C---------------T--TEEECCCCT
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCC-EEEEEeCCCcc--cc-----------C---------------C--CccEEEccC
Confidence            57999996 9999999999999884 57766543210  00           0               1  234445555


Q ss_pred             CCCcchHhhhccCcEEEEccC-------------ChHHHHHHHHHHHHCCC-cEEEecccCc
Q 015243           92 KDPKFNVEFFKQFNVVLNGLD-------------NLDARRHVNRLCLAADV-PLVESGTTGF  139 (410)
Q Consensus        92 ~~~~~~~~~~~~~DvVi~a~D-------------n~~~r~~i~~~c~~~~~-p~i~~g~~G~  139 (410)
                      ++...-...++++|+||.+..             |...-..+-+.|.+.++ .+|..++.+.
T Consensus        52 ~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~  113 (267)
T 3ay3_A           52 ADAQAVHDLVKDCDGIIHLGGVSVERPWNDILQANIIGAYNLYEAARNLGKPRIVFASSNHT  113 (267)
T ss_dssp             TCHHHHHHHHTTCSEEEECCSCCSCCCHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEEGGG
T ss_pred             CCHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCHHH
Confidence            443333455677888888632             12222445566666664 5666555443

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=93.17  E-value=0.054  Score=51.66  Aligned_cols=118  Identities=14%  Similarity=0.189  Sum_probs=62.6

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      ++.||.+||+|-+|..++++|+..|.. +++.|.+.-....+.        +.|-.-++..++.++  ..++-+......
T Consensus         4 Ms~kIgfIGLG~MG~~mA~~L~~~G~~-V~v~dr~~~~~~~l~--------~~G~~~~~s~~e~~~--~~dvvi~~l~~~   72 (297)
T 4gbj_A            4 MSEKIAFLGLGNLGTPIAEILLEAGYE-LVVWNRTASKAEPLT--------KLGATVVENAIDAIT--PGGIVFSVLADD   72 (297)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHHTTCE-EEEC-------CTTT--------TTTCEECSSGGGGCC--TTCEEEECCSSH
T ss_pred             CCCcEEEEecHHHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHH--------HcCCeEeCCHHHHHh--cCCceeeeccch
Confidence            457899999999999999999999975 777774432222221        112111111111111  112222221111


Q ss_pred             C-CCCcc---hHhhhccCcEEEEc-cCChHHHHHHHHHHHHCCCcEEEecccCc
Q 015243           91 V-KDPKF---NVEFFKQFNVVLNG-LDNLDARRHVNRLCLAADVPLVESGTTGF  139 (410)
Q Consensus        91 i-~~~~~---~~~~~~~~DvVi~a-~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~  139 (410)
                      . .+..+   .......-+++|++ +-+++.-..+.+.+...++-++++...|.
T Consensus        73 ~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsGg  126 (297)
T 4gbj_A           73 AAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFAR  126 (297)
T ss_dssp             HHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECC
T ss_pred             hhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcCCC
Confidence            0 00000   11223455677774 45566777788888888999999887764

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=93.15  E-value=0.31  Score=44.88  Aligned_cols=81  Identities=21%  Similarity=0.313  Sum_probs=50.6

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .|.+++++|.| .||||.++++.|+..|.. +.++|.+.                   .+.+.+++.+.+..  .++..+
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~-------------------~~~~~~~~~~~~~~--~~~~~~   61 (262)
T 1zem_A            4 KFNGKVCLVTGAGGNIGLATALRLAEEGTA-IALLDMNR-------------------EALEKAEASVREKG--VEARSY   61 (262)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCH-------------------HHHHHHHHHHHTTT--SCEEEE
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCH-------------------HHHHHHHHHHHhcC--CcEEEE
Confidence            36778899997 689999999999999964 77776321                   23344445554432  345556


Q ss_pred             ccCCCCCcchHhh-------hccCcEEEEcc
Q 015243           88 HANVKDPKFNVEF-------FKQFNVVLNGL  111 (410)
Q Consensus        88 ~~~i~~~~~~~~~-------~~~~DvVi~a~  111 (410)
                      ..++++......+       +.+.|+||++.
T Consensus        62 ~~D~~~~~~~~~~~~~~~~~~g~id~lv~nA   92 (262)
T 1zem_A           62 VCDVTSEEAVIGTVDSVVRDFGKIDFLFNNA   92 (262)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EecCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            6666543221122       23678887743

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=93.15  E-value=0.5  Score=43.99  Aligned_cols=103  Identities=13%  Similarity=0.122  Sum_probs=60.3

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        12 ~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      .++|+|.|+ |.+|..+++.|...|-.++.+++.+.-                 +.++    +.+..  +.+  +....+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~-----------------~~~~----~~l~~--~~~--~~~~~D   59 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPR-----------------KKAA----KELRL--QGA--EVVQGD   59 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTT-----------------SHHH----HHHHH--TTC--EEEECC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCC-----------------CHHH----HHHHH--CCC--EEEEec
Confidence            478999997 999999999999988445777653210                 1111    12222  233  344556


Q ss_pred             CCCCcchHhhhccCcEEEEccCCh---------HHHHHHHHHHHHCCC-cEEEecccCc
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLDNL---------DARRHVNRLCLAADV-PLVESGTTGF  139 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~Dn~---------~~r~~i~~~c~~~~~-p~i~~g~~G~  139 (410)
                      +++...-...++++|+||.+....         ..-..+-+.|.+.++ .++.+++.+.
T Consensus        60 ~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~~~  118 (299)
T 2wm3_A           60 QDDQVIMELALNGAYATFIVTNYWESCSQEQEVKQGKLLADLARRLGLHYVVYSGLENI  118 (299)
T ss_dssp             TTCHHHHHHHHTTCSEEEECCCHHHHTCHHHHHHHHHHHHHHHHHHTCSEEEECCCCCH
T ss_pred             CCCHHHHHHHHhcCCEEEEeCCCCccccchHHHHHHHHHHHHHHHcCCCEEEEEcCccc
Confidence            654433345678899999976421         122234455666665 3555554443

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=93.14  E-value=0.16  Score=46.82  Aligned_cols=97  Identities=20%  Similarity=0.184  Sum_probs=57.7

Q ss_pred             cEEEECC-cHHHHHHHHHHHHh--CCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           14 KVLMVGA-GGIGCELLKTLALS--GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        14 ~VlvvG~-GgiG~ev~knLa~~--Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      +|+|.|+ |.+|..+++.|...  |. ++++++.+.   +                +...    +..  +.  ++.+..+
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~---~----------------~~~~----~~~--~~--~~~~~~D   52 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS-QIVAIVRNP---A----------------KAQA----LAA--QG--ITVRQAD   52 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG-GEEEEESCT---T----------------TCHH----HHH--TT--CEEEECC
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc-eEEEEEcCh---H----------------hhhh----hhc--CC--CeEEEcC
Confidence            5899996 99999999999987  74 577776431   0                0011    111  22  3344556


Q ss_pred             CCCCcchHhhhccCcEEEEccC-----ChHHHHHHHHHHHHCCC-cEEEecccC
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLD-----NLDARRHVNRLCLAADV-PLVESGTTG  138 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~D-----n~~~r~~i~~~c~~~~~-p~i~~g~~G  138 (410)
                      +++...-...++++|+||.+..     +...-..+-+.|.+.++ .+|..++.+
T Consensus        53 ~~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~  106 (286)
T 2zcu_A           53 YGDEAALTSALQGVEKLLLISSSEVGQRAPQHRNVINAAKAAGVKFIAYTSLLH  106 (286)
T ss_dssp             TTCHHHHHHHTTTCSEEEECC--------CHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred             CCCHHHHHHHHhCCCEEEEeCCCCchHHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence            6544333456788999998653     23334455566766665 466665543

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=93.14  E-value=0.25  Score=45.32  Aligned_cols=34  Identities=32%  Similarity=0.470  Sum_probs=28.2

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +.+++|+|.| .|+||.++++.|+..|. ++.++|.
T Consensus        12 l~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r   46 (266)
T 1xq1_A           12 LKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCAR   46 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            5667888887 68999999999999996 5777764

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=93.14  E-value=0.079  Score=49.90  Aligned_cols=33  Identities=33%  Similarity=0.636  Sum_probs=30.5

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      .+++|+|+|+||.|..++..|...|+++|+|++
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~n  150 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYA  150 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEEC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEe
Confidence            357899999999999999999999999999975

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=93.12  E-value=0.074  Score=52.92  Aligned_cols=34  Identities=29%  Similarity=0.544  Sum_probs=32.0

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      +.+++|+|+|+|++|..+++.|...|+++++++|
T Consensus       165 l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~  198 (404)
T 1gpj_A          165 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVAN  198 (404)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEEC
T ss_pred             ccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEe
Confidence            5789999999999999999999999998999987

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=93.10  E-value=0.38  Score=46.64  Aligned_cols=88  Identities=19%  Similarity=0.275  Sum_probs=55.7

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      +|.+++|+|.| .||||.++++.|+..|. ++.++|.+.-....+          .+  +.+.+++.+.+..  .++..+
T Consensus        42 ~l~gk~vlVTGas~GIG~aia~~La~~Ga-~Vvl~~r~~~~~~~l----------~~--~l~~~~~~~~~~g--~~~~~~  106 (346)
T 3kvo_A           42 RLAGCTVFITGASRGIGKAIALKAAKDGA-NIVIAAKTAQPHPKL----------LG--TIYTAAEEIEAVG--GKALPC  106 (346)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSS----------CC--CHHHHHHHHHHTT--CEEEEE
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHHHCCC-EEEEEECChhhhhhh----------HH--HHHHHHHHHHhcC--CeEEEE
Confidence            56788999998 58999999999999996 588887554322211          11  1233444555543  366666


Q ss_pred             ccCCCCCcchHhh-------hccCcEEEEcc
Q 015243           88 HANVKDPKFNVEF-------FKQFNVVLNGL  111 (410)
Q Consensus        88 ~~~i~~~~~~~~~-------~~~~DvVi~a~  111 (410)
                      ..++++...-..+       +.+.|+||++.
T Consensus       107 ~~Dv~d~~~v~~~~~~~~~~~g~iDilVnnA  137 (346)
T 3kvo_A          107 IVDVRDEQQISAAVEKAIKKFGGIDILVNNA  137 (346)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            6677554322223       23788888853

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=93.09  E-value=0.35  Score=49.45  Aligned_cols=34  Identities=21%  Similarity=0.299  Sum_probs=29.6

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .+.+|.|||+|.+|+.++.+|+..|. ++++.|.+
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~G~-~V~v~dr~   42 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADHGF-TVCAYNRT   42 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            46799999999999999999999997 47887743

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=93.07  E-value=0.38  Score=44.03  Aligned_cols=78  Identities=23%  Similarity=0.316  Sum_probs=48.4

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      +++++|.| .||||.++++.|+..|. ++.++|.+.                   .+.+.+++.+....  .++..+..+
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~--~~~~~~~~D   59 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYND-------------------ATAKAVASEINQAG--GHAVAVKVD   59 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTT--CCEEEEECC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcC--CcEEEEEec
Confidence            46788887 68999999999999996 577776321                   23344444554433  245555566


Q ss_pred             CCCCcchHhhh-------ccCcEEEEcc
Q 015243           91 VKDPKFNVEFF-------KQFNVVLNGL  111 (410)
Q Consensus        91 i~~~~~~~~~~-------~~~DvVi~a~  111 (410)
                      +++...-..++       .+.|+||++.
T Consensus        60 ~~~~~~v~~~~~~~~~~~g~id~lv~nA   87 (256)
T 1geg_A           60 VSDRDQVFAAVEQARKTLGGFDVIVNNA   87 (256)
T ss_dssp             TTSHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            65432222233       3678888753

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=93.06  E-value=0.19  Score=46.17  Aligned_cols=82  Identities=20%  Similarity=0.272  Sum_probs=50.6

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .+++++|+|.| .|+||.++++.|+..|. ++.++|...                  ..+.+.+.+.+++..+  ++..+
T Consensus        18 ~~~~k~vlItGasggiG~~la~~l~~~G~-~v~~~~r~~------------------~~~~~~~~~~l~~~~~--~~~~~   76 (274)
T 1ja9_A           18 PLAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSS------------------SKAAEEVVAELKKLGA--QGVAI   76 (274)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSC------------------HHHHHHHHHHHHHTTC--CEEEE
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCc------------------hHHHHHHHHHHHhcCC--cEEEE
Confidence            36678899997 68999999999999996 477766310                  1233444455554433  45555


Q ss_pred             ccCCCCCcchHhhhc-------cCcEEEEcc
Q 015243           88 HANVKDPKFNVEFFK-------QFNVVLNGL  111 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~-------~~DvVi~a~  111 (410)
                      ..++++...-..+++       +.|+||++.
T Consensus        77 ~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~A  107 (274)
T 1ja9_A           77 QADISKPSEVVALFDKAVSHFGGLDFVMSNS  107 (274)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCEEEEECCC
T ss_pred             EecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            566654322223333       678887753

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=93.05  E-value=0.37  Score=44.80  Aligned_cols=63  Identities=17%  Similarity=0.316  Sum_probs=46.4

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .|+++.++|-| .+|||-++++.|+..|.. +.++|.+                   ..+.+.+++.+++...  ++..+
T Consensus         4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~-Vv~~~~~-------------------~~~~~~~~~~i~~~g~--~~~~~   61 (254)
T 4fn4_A            4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSI-VVAVELL-------------------EDRLNQIVQELRGMGK--EVLGV   61 (254)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESC-------------------HHHHHHHHHHHHHTTC--CEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEECC-------------------HHHHHHHHHHHHhcCC--cEEEE
Confidence            47888888887 679999999999999975 7777732                   3456667777776643  55666


Q ss_pred             ccCCCC
Q 015243           88 HANVKD   93 (410)
Q Consensus        88 ~~~i~~   93 (410)
                      ..++++
T Consensus        62 ~~Dvt~   67 (254)
T 4fn4_A           62 KADVSK   67 (254)
T ss_dssp             ECCTTS
T ss_pred             EccCCC
Confidence            666654

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=93.03  E-value=0.45  Score=49.16  Aligned_cols=90  Identities=12%  Similarity=0.158  Sum_probs=65.5

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~   92 (410)
                      .+|+|+|+|.+|..+++.|...|.. ++++|.|.-....+.                               ....++.+
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~-v~vid~d~~~~~~~~-------------------------------~~i~gD~t  396 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVP-FILIDRQESPVCNDH-------------------------------VVVYGDAT  396 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCC-EEEEESSCCSSCCSS-------------------------------CEEESCSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCC-EEEEECChHHHhhcC-------------------------------CEEEeCCC
Confidence            7899999999999999999999976 899997754322210                               23334443


Q ss_pred             CC-cchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCc-EEEe
Q 015243           93 DP-KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVP-LVES  134 (410)
Q Consensus        93 ~~-~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p-~i~~  134 (410)
                      +. .+...-++++|.+|.++++.+....+...+++.+.+ -+-+
T Consensus       397 ~~~~L~~agi~~ad~vi~~~~~d~~ni~~~~~ak~l~~~~~iia  440 (565)
T 4gx0_A          397 VGQTLRQAGIDRASGIIVTTNDDSTNIFLTLACRHLHSHIRIVA  440 (565)
T ss_dssp             SSTHHHHHTTTSCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEE
T ss_pred             CHHHHHhcCccccCEEEEECCCchHHHHHHHHHHHHCCCCEEEE
Confidence            32 233445789999999999988888888888887653 4433

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=93.01  E-value=0.29  Score=46.04  Aligned_cols=81  Identities=23%  Similarity=0.355  Sum_probs=50.8

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .|++++++|.| .||||.++++.|+..|.. +.++|.+.-                  ...+.+.+.+.+..  .++..+
T Consensus        44 ~l~gk~vlVTGas~GIG~aia~~la~~G~~-V~~~~r~~~------------------~~~~~~~~~~~~~~--~~~~~~  102 (291)
T 3ijr_A           44 KLKGKNVLITGGDSGIGRAVSIAFAKEGAN-IAIAYLDEE------------------GDANETKQYVEKEG--VKCVLL  102 (291)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCH------------------HHHHHHHHHHHTTT--CCEEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCch------------------HHHHHHHHHHHhcC--CcEEEE
Confidence            46788999998 689999999999999964 777764311                  12333444444433  355666


Q ss_pred             ccCCCCCcchHhh-------hccCcEEEEc
Q 015243           88 HANVKDPKFNVEF-------FKQFNVVLNG  110 (410)
Q Consensus        88 ~~~i~~~~~~~~~-------~~~~DvVi~a  110 (410)
                      ..++++...-..+       +.+.|++|++
T Consensus       103 ~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnn  132 (291)
T 3ijr_A          103 PGDLSDEQHCKDIVQETVRQLGSLNILVNN  132 (291)
T ss_dssp             ESCTTSHHHHHHHHHHHHHHHSSCCEEEEC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            6666543222222       2367888775

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=92.99  E-value=0.15  Score=49.85  Aligned_cols=90  Identities=11%  Similarity=0.165  Sum_probs=52.9

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC------CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHH--hhCCCC--
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGF------QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVL--KFRPQM--   82 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv------~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~--~~np~v--   82 (410)
                      .+|.|||+|.+|+.++..|+..|.      ..++++|.+.-              ..++.+++.+.+.-.  ..-|+.  
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~--------------~~~~~~~~~l~~~~~~~~~~~~~~~   87 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF--------------VNGERMVDIINNKHENTKYLKGVPL   87 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC-----------------CCHHHHHHHHCBCTTTSTTCBC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh--------------hhhHHHHHHHHhcCcccccCCcccC
Confidence            489999999999999999999992      46888875421              012334544433210  011221  


Q ss_pred             --eEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHH
Q 015243           83 --SITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL  123 (410)
Q Consensus        83 --~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~  123 (410)
                        .+....       ...+...++|+||.|+-....+..+.++
T Consensus        88 ~~~i~~~~-------~~~ea~~~aDvVilav~~~~~~~vl~~i  123 (375)
T 1yj8_A           88 PHNIVAHS-------DLASVINDADLLIFIVPCQYLESVLASI  123 (375)
T ss_dssp             CTTEEEES-------STHHHHTTCSEEEECCCHHHHHHHHHHH
T ss_pred             cCCeEEEC-------CHHHHHcCCCEEEEcCCHHHHHHHHHHH
Confidence              122111       1124467899999999765555555444

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=92.93  E-value=0.17  Score=48.54  Aligned_cols=73  Identities=14%  Similarity=0.165  Sum_probs=51.3

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHh-CCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~-Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      ..++++|||+|.+|...++.|... ++.+|.+.|.+                     |++.+++.+.+.. ++.+...  
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~---------------------~a~~la~~l~~~~-g~~~~~~--  175 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY---------------------ASPEILERIGRRC-GVPARMA--  175 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT---------------------CCHHHHHHHHHHH-TSCEEEC--
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc---------------------HHHHHHHHHHHhc-CCeEEEe--
Confidence            357899999999999999999874 78899998743                     3344455554322 3444332  


Q ss_pred             CCCCCcchHhhhccCcEEEEccCC
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLDN  113 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~Dn  113 (410)
                      .      ..+.+.++|+|+.|+-+
T Consensus       176 ~------~~eav~~aDIVi~aT~s  193 (313)
T 3hdj_A          176 A------PADIAAQADIVVTATRS  193 (313)
T ss_dssp             C------HHHHHHHCSEEEECCCC
T ss_pred             C------HHHHHhhCCEEEEccCC
Confidence            2      24567899999999864

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=92.92  E-value=0.23  Score=46.12  Aligned_cols=36  Identities=28%  Similarity=0.549  Sum_probs=30.6

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .|.+++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~   44 (271)
T 3tzq_B            8 ELENKVAIITGACGGIGLETSRVLARAGA-RVVLADLP   44 (271)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECT
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            56788899998 58999999999999997 48888754

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=92.88  E-value=0.24  Score=46.33  Aligned_cols=82  Identities=18%  Similarity=0.276  Sum_probs=50.9

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .+.+++|+|.| .|+||.++++.|+..|. ++.++|.+.                   .+.+.+.+.+.+.. ..++..+
T Consensus        23 ~l~~k~vlITGasggiG~~la~~L~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~-~~~~~~~   81 (302)
T 1w6u_A           23 SFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKM-------------------DVLKATAEQISSQT-GNKVHAI   81 (302)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHHH-SSCEEEE
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHHhc-CCceEEE
Confidence            36778899998 68999999999999996 477776321                   23333444444431 1245666


Q ss_pred             ccCCCCCcchHhh-------hccCcEEEEcc
Q 015243           88 HANVKDPKFNVEF-------FKQFNVVLNGL  111 (410)
Q Consensus        88 ~~~i~~~~~~~~~-------~~~~DvVi~a~  111 (410)
                      ..++++...-...       +.+.|+||++.
T Consensus        82 ~~Dl~~~~~~~~~~~~~~~~~g~id~li~~A  112 (302)
T 1w6u_A           82 QCDVRDPDMVQNTVSELIKVAGHPNIVINNA  112 (302)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHTCSCSEEEECC
T ss_pred             EeCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            6666543222222       23558888754

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=92.88  E-value=0.16  Score=46.69  Aligned_cols=35  Identities=31%  Similarity=0.672  Sum_probs=29.3

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      |.+++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   45 (263)
T 3ak4_A           10 LSGRKAIVTGGSKGIGAAIARALDKAGA-TVAIADLD   45 (263)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5678899997 68999999999999997 57777743

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=92.86  E-value=0.099  Score=49.85  Aligned_cols=35  Identities=31%  Similarity=0.542  Sum_probs=30.0

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCC-CcEEEEeCC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMD   45 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~D   45 (410)
                      ...+|.|+|+|++|+.++..|+..|. ++++++|.+
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~   41 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   41 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            35789999999999999999999995 479998854

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=92.82  E-value=0.25  Score=45.34  Aligned_cols=38  Identities=21%  Similarity=0.261  Sum_probs=29.7

Q ss_pred             HHHhCCcEEEEC-CcHHHHHHHHHHHHhCC--CcEEEEeCC
Q 015243            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGF--QDIHIIDMD   45 (410)
Q Consensus         8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv--~~i~liD~D   45 (410)
                      ..+..++|+|.| .|+||.++++.|+..|.  .++.++|.+
T Consensus        17 ~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~   57 (267)
T 1sny_A           17 RGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRN   57 (267)
T ss_dssp             ---CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESC
T ss_pred             cCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecC
Confidence            457778888887 68999999999999995  578888743

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=92.82  E-value=0.46  Score=50.35  Aligned_cols=38  Identities=29%  Similarity=0.379  Sum_probs=27.9

Q ss_pred             HHHHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            6 QLEAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         6 ~q~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ....+++++|+|.| .|.||+.+++.|+..|. +++++|.
T Consensus         5 ~~~~~~~~~ilVTGatG~IG~~l~~~L~~~G~-~V~~~~r   43 (699)
T 1z45_A            5 LQSESTSKIVLVTGGAGYIGSHTVVELIENGY-DCVVADN   43 (699)
T ss_dssp             ------CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             cccccCCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEC
Confidence            34457788999998 69999999999999995 5777763

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=92.81  E-value=0.41  Score=44.33  Aligned_cols=34  Identities=29%  Similarity=0.490  Sum_probs=28.5

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      |.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus        19 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r   53 (273)
T 1ae1_A           19 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSR   53 (273)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeC
Confidence            5678889998 68999999999999996 4777764

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=92.81  E-value=0.39  Score=44.42  Aligned_cols=37  Identities=22%  Similarity=0.446  Sum_probs=30.2

Q ss_pred             HHHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            7 LEAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         7 q~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +..|.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus        16 ~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r   53 (267)
T 1vl8_A           16 VFDLRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASR   53 (267)
T ss_dssp             -CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            3457788899997 68999999999999996 4777763

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=92.79  E-value=0.29  Score=44.77  Aligned_cols=35  Identities=26%  Similarity=0.488  Sum_probs=29.2

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +.+++|+|.| .|+||.++++.|+..|. ++.++|.+
T Consensus        10 ~~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~   45 (265)
T 2o23_A           10 VKGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLP   45 (265)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECT
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5678899997 68999999999999996 47777643

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=92.77  E-value=0.5  Score=44.81  Aligned_cols=105  Identities=17%  Similarity=0.191  Sum_probs=58.4

Q ss_pred             HHHHHhC-CcEEEEC-CcHHHHHHHHHHHHh-CCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC-CC
Q 015243            6 QLEAIKG-AKVLMVG-AGGIGCELLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR-PQ   81 (410)
Q Consensus         6 ~q~~L~~-~~VlvvG-~GgiG~ev~knLa~~-Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~n-p~   81 (410)
                      .|..+.. .||.|+| +|.+|..+++.+... ++.=+-++|...-   .      +...|+|.    .     ..+. .+
T Consensus        14 ~~~~m~~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~---~------~~G~d~ge----l-----~G~~~~g   75 (288)
T 3ijp_A           14 AQTQGPGSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGS---S------FVDKDASI----L-----IGSDFLG   75 (288)
T ss_dssp             -------CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTC---T------TTTSBGGG----G-----TTCSCCS
T ss_pred             hhhhccCCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc---c------ccccchHH----h-----hccCcCC
Confidence            3444433 5899999 999999999988753 3332333343210   0      11223331    0     0011 11


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCc
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGF  139 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~  139 (410)
                      +.+       ..  ..++.+.++|+||+.+ .+++-...-..|.++++|++- |+.|+
T Consensus        76 v~v-------~~--dl~~ll~~aDVvIDFT-~p~a~~~~~~~~l~~Gv~vVi-GTTG~  122 (288)
T 3ijp_A           76 VRI-------TD--DPESAFSNTEGILDFS-QPQASVLYANYAAQKSLIHII-GTTGF  122 (288)
T ss_dssp             CBC-------BS--CHHHHTTSCSEEEECS-CHHHHHHHHHHHHHHTCEEEE-CCCCC
T ss_pred             cee-------eC--CHHHHhcCCCEEEEcC-CHHHHHHHHHHHHHcCCCEEE-ECCCC
Confidence            111       11  1245667899999988 466666667899999999994 45565

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=92.77  E-value=0.27  Score=45.22  Aligned_cols=36  Identities=19%  Similarity=0.493  Sum_probs=30.5

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .+.+++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus         5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~   41 (255)
T 4eso_A            5 NYQGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRN   41 (255)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            47788999998 68999999999999997 58887743

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=92.76  E-value=0.19  Score=47.03  Aligned_cols=35  Identities=26%  Similarity=0.504  Sum_probs=29.1

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .|++++++|.| .||||.++++.|+..|. ++.++|.
T Consensus        26 ~l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r   61 (277)
T 3gvc_A           26 DLAGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADI   61 (277)
T ss_dssp             -CTTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            47778888887 67999999999999997 5778774

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=92.76  E-value=0.25  Score=44.63  Aligned_cols=34  Identities=29%  Similarity=0.496  Sum_probs=28.1

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      |.+++++|.| .|+||.++++.|+..|. ++.++|.
T Consensus         5 ~~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r   39 (248)
T 2pnf_A            5 LQGKVSLVTGSTRGIGRAIAEKLASAGS-TVIITGT   39 (248)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            5677888887 68999999999999996 5777763

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=92.74  E-value=0.46  Score=44.21  Aligned_cols=33  Identities=21%  Similarity=0.408  Sum_probs=28.3

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      |.+++++|.| .||||.++++.|+..|. ++.++|
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~   62 (273)
T 3uf0_A           29 LAGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWG   62 (273)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEc
Confidence            5678899997 68999999999999998 477776

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=92.73  E-value=0.1  Score=49.43  Aligned_cols=35  Identities=26%  Similarity=0.479  Sum_probs=31.6

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .|.+++|+|+|+|++|..+++.|...|. +++++|.
T Consensus       152 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr  186 (293)
T 3d4o_A          152 TIHGANVAVLGLGRVGMSVARKFAALGA-KVKVGAR  186 (293)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEEC
Confidence            3678999999999999999999999998 7888874

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=92.69  E-value=0.41  Score=46.00  Aligned_cols=73  Identities=14%  Similarity=0.103  Sum_probs=51.8

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHh-CCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~-Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      ...+++|||+|++|...++.|... ++.++.+.|.                   ...|++.+++.+....  +.+. . .
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r-------------------~~~~a~~la~~~~~~~--~~~~-~-~  180 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDV-------------------REKAAKKFVSYCEDRG--ISAS-V-Q  180 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECS-------------------SHHHHHHHHHHHHHTT--CCEE-E-C
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECC-------------------CHHHHHHHHHHHHhcC--ceEE-E-C
Confidence            467899999999999999999874 6888888762                   2346777777665421  3333 2 1


Q ss_pred             CCCCCcchHhhhccCcEEEEccCC
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLDN  113 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~Dn  113 (410)
                      .      ..+.+ ++|+|++|+-+
T Consensus       181 ~------~~e~v-~aDvVi~aTp~  197 (322)
T 1omo_A          181 P------AEEAS-RCDVLVTTTPS  197 (322)
T ss_dssp             C------HHHHT-SSSEEEECCCC
T ss_pred             C------HHHHh-CCCEEEEeeCC
Confidence            1      23456 89999999875

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=92.69  E-value=0.32  Score=44.55  Aligned_cols=36  Identities=25%  Similarity=0.407  Sum_probs=30.5

Q ss_pred             HHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ..|++++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         8 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r   44 (252)
T 3f1l_A            8 DLLNDRIILVTGASDGIGREAAMTYARYGA-TVILLGR   44 (252)
T ss_dssp             TTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            357888999998 58999999999999997 4888774

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=92.68  E-value=0.22  Score=46.51  Aligned_cols=33  Identities=33%  Similarity=0.570  Sum_probs=27.2

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHh--CCCcEEEEeCC
Q 015243           12 GAKVLMVGA-GGIGCELLKTLALS--GFQDIHIIDMD   45 (410)
Q Consensus        12 ~~~VlvvG~-GgiG~ev~knLa~~--Gv~~i~liD~D   45 (410)
                      +++|+|.|+ |.||+.+++.|...  | .+++++|.+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r~   37 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGT-ENVIASDIR   37 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCG-GGEEEEESC
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCC-CEEEEEcCC
Confidence            478999996 99999999999998  5 457777743

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=92.66  E-value=0.11  Score=49.80  Aligned_cols=34  Identities=21%  Similarity=0.484  Sum_probs=30.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ..+|.|+|+|.+|+.++..|+..|...++++|.+
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~   37 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIA   37 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            4689999999999999999999998669999864

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=92.64  E-value=0.076  Score=49.85  Aligned_cols=73  Identities=23%  Similarity=0.332  Sum_probs=50.5

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      +..++++|+|+||+|..++..|+..| .+++++|.+                   ..|++.+++.+....   .+.... 
T Consensus       117 ~~~~~vlvlGaGg~g~a~a~~L~~~G-~~v~v~~R~-------------------~~~a~~l~~~~~~~~---~~~~~~-  172 (272)
T 1p77_A          117 RPNQHVLILGAGGATKGVLLPLLQAQ-QNIVLANRT-------------------FSKTKELAERFQPYG---NIQAVS-  172 (272)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHHTT-CEEEEEESS-------------------HHHHHHHHHHHGGGS---CEEEEE-
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEECC-------------------HHHHHHHHHHccccC---CeEEee-
Confidence            46789999999999999999999999 889998732                   246666666654321   222211 


Q ss_pred             CCCCCcchHhhh-ccCcEEEEccCC
Q 015243           90 NVKDPKFNVEFF-KQFNVVLNGLDN  113 (410)
Q Consensus        90 ~i~~~~~~~~~~-~~~DvVi~a~Dn  113 (410)
                       +.      +.- .++|+||+++..
T Consensus       173 -~~------~~~~~~~DivIn~t~~  190 (272)
T 1p77_A          173 -MD------SIPLQTYDLVINATSA  190 (272)
T ss_dssp             -GG------GCCCSCCSEEEECCCC
T ss_pred             -HH------HhccCCCCEEEECCCC
Confidence             10      111 379999999864

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=92.63  E-value=0.4  Score=45.07  Aligned_cols=100  Identities=18%  Similarity=0.192  Sum_probs=60.0

Q ss_pred             hCCcEEEEC-CcHHHHHHHHHHHHh-CCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           11 KGAKVLMVG-AGGIGCELLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        11 ~~~~VlvvG-~GgiG~ev~knLa~~-Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      ...||.|+| +|.+|.++++.+... ++.=+-++|...-.         +...|+|.    .+     .+.+++.+    
T Consensus         6 ~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~---------~~G~d~ge----l~-----g~~~gv~v----   63 (272)
T 4f3y_A            6 SSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSP---------QLGQDAGA----FL-----GKQTGVAL----   63 (272)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCT---------TTTSBTTT----TT-----TCCCSCBC----
T ss_pred             cccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcc---------cccccHHH----Hh-----CCCCCcee----
Confidence            346899999 899999999999864 33222334432100         01223332    11     11122211    


Q ss_pred             cCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCc
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGF  139 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~  139 (410)
                         .+  ..++.+.++|+||+++ .+++-...-..|.++++|++. |+.|+
T Consensus        64 ---~~--dl~~ll~~~DVVIDfT-~p~a~~~~~~~al~~G~~vVi-gTTG~  107 (272)
T 4f3y_A           64 ---TD--DIERVCAEADYLIDFT-LPEGTLVHLDAALRHDVKLVI-GTTGF  107 (272)
T ss_dssp             ---BC--CHHHHHHHCSEEEECS-CHHHHHHHHHHHHHHTCEEEE-CCCCC
T ss_pred             ---cC--CHHHHhcCCCEEEEcC-CHHHHHHHHHHHHHcCCCEEE-ECCCC
Confidence               11  1245667899999998 456666677789999999885 55565

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=92.63  E-value=0.47  Score=44.45  Aligned_cols=35  Identities=20%  Similarity=0.287  Sum_probs=27.4

Q ss_pred             HHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus         8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      ..|.+++++|.| .||||.++++.|+..|. ++.++|
T Consensus         5 ~~l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~   40 (291)
T 1e7w_A            5 TAPTVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHY   40 (291)
T ss_dssp             ---CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEc
Confidence            457778888887 78999999999999997 477766

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=92.58  E-value=0.35  Score=44.21  Aligned_cols=36  Identities=31%  Similarity=0.585  Sum_probs=30.0

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .+.+++++|.| .||||.++++.|+..|.. +.++|.+
T Consensus         6 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~-V~~~~r~   42 (261)
T 3n74_A            6 SLEGKVALITGAGSGFGEGMAKRFAKGGAK-VVIVDRD   42 (261)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCC
Confidence            36778899998 579999999999999965 8887743

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=92.54  E-value=0.43  Score=44.95  Aligned_cols=92  Identities=22%  Similarity=0.208  Sum_probs=53.6

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      +|.++.++|.| .||||.++++.|+..|.. +.++|.+.-.    ....+ .  .-...+.+.+.+.+....  .++..+
T Consensus        25 ~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~~~~~~----~~~~~-~--~~~~~~~~~~~~~~~~~~--~~~~~~   94 (299)
T 3t7c_A           25 KVEGKVAFITGAARGQGRSHAITLAREGAD-IIAIDVCKQL----DGVKL-P--MSTPDDLAETVRQVEALG--RRIIAS   94 (299)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCC----TTCCS-C--CCCHHHHHHHHHHHHHTT--CCEEEE
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeccccc----ccccc-c--ccCHHHHHHHHHHHHhcC--CceEEE
Confidence            46788899998 589999999999999975 7777754210    00000 0  011234444555555544  356666


Q ss_pred             ccCCCCCcchHhh-------hccCcEEEEc
Q 015243           88 HANVKDPKFNVEF-------FKQFNVVLNG  110 (410)
Q Consensus        88 ~~~i~~~~~~~~~-------~~~~DvVi~a  110 (410)
                      ..++++...-..+       +.+.|++|++
T Consensus        95 ~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~n  124 (299)
T 3t7c_A           95 QVDVRDFDAMQAAVDDGVTQLGRLDIVLAN  124 (299)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             ECCCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence            6666543222222       2356777764

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=92.54  E-value=0.34  Score=44.10  Aligned_cols=80  Identities=24%  Similarity=0.344  Sum_probs=48.9

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      |++++++|.| .||||.++++.|+..|.. +.++|..                  ...+.+.+++.+++..+  ++..+.
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r~------------------~~~~~~~~~~~~~~~~~--~~~~~~   60 (246)
T 2uvd_A            2 LKGKVALVTGASRGIGRAIAIDLAKQGAN-VVVNYAG------------------NEQKANEVVDEIKKLGS--DAIAVR   60 (246)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESS------------------CHHHHHHHHHHHHHTTC--CEEEEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC------------------CHHHHHHHHHHHHhcCC--cEEEEE
Confidence            4567788887 689999999999999964 6666521                  11244445555555433  455555


Q ss_pred             cCCCCCcchHhhh-------ccCcEEEEc
Q 015243           89 ANVKDPKFNVEFF-------KQFNVVLNG  110 (410)
Q Consensus        89 ~~i~~~~~~~~~~-------~~~DvVi~a  110 (410)
                      .++++...-..++       .+.|++|++
T Consensus        61 ~D~~~~~~~~~~~~~~~~~~g~id~lv~n   89 (246)
T 2uvd_A           61 ADVANAEDVTNMVKQTVDVFGQVDILVNN   89 (246)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            6665432222222       367777775

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=92.53  E-value=0.38  Score=44.84  Aligned_cols=35  Identities=20%  Similarity=0.370  Sum_probs=29.1

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .+.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus        24 ~l~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r   59 (277)
T 4dqx_A           24 DLNQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADV   59 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            35677888887 68999999999999997 5777774

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=92.53  E-value=0.18  Score=45.45  Aligned_cols=35  Identities=26%  Similarity=0.351  Sum_probs=29.0

Q ss_pred             hCCcEEEEC-CcHHHHHHHHHHHHhCC-CcEEEEeCC
Q 015243           11 KGAKVLMVG-AGGIGCELLKTLALSGF-QDIHIIDMD   45 (410)
Q Consensus        11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv-~~i~liD~D   45 (410)
                      ++++|+|.| .|+||.++++.|+..|. .++.++|.+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~   38 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARD   38 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESS
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecC
Confidence            456788887 68999999999999995 578888754

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=92.52  E-value=0.47  Score=45.51  Aligned_cols=31  Identities=29%  Similarity=0.444  Sum_probs=26.6

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ++|+|.| .|+||..+++.|+..|. +++++|.
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r   33 (372)
T 1db3_A            2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKR   33 (372)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEEC
Confidence            5799998 59999999999999995 6777764

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=92.51  E-value=0.29  Score=44.55  Aligned_cols=62  Identities=24%  Similarity=0.307  Sum_probs=40.6

Q ss_pred             hCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      ++++++|.| .||||.++++.|+..|.. +.++|...                  ..+.+.+.+.+++..+  ++..+..
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~-V~~~~~~~------------------~~~~~~~~~~~~~~~~--~~~~~~~   61 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYN-VAVNYAGS------------------KEKAEAVVEEIKAKGV--DSFAIQA   61 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSC------------------HHHHHHHHHHHHHTTS--CEEEEEC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCC------------------HHHHHHHHHHHHhcCC--cEEEEEc
Confidence            456788887 689999999999999975 55655321                  2345555566655433  4555555


Q ss_pred             CCCC
Q 015243           90 NVKD   93 (410)
Q Consensus        90 ~i~~   93 (410)
                      ++++
T Consensus        62 Dv~d   65 (246)
T 3osu_A           62 NVAD   65 (246)
T ss_dssp             CTTC
T ss_pred             cCCC
Confidence            6644

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=92.49  E-value=0.13  Score=44.21  Aligned_cols=33  Identities=27%  Similarity=0.401  Sum_probs=29.5

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      .+|+|||.|.+|++++..|++.|. +++|+|...
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~-~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGL-KVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            379999999999999999999997 599998764

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=92.49  E-value=0.33  Score=44.44  Aligned_cols=33  Identities=33%  Similarity=0.581  Sum_probs=27.4

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      |.+++++|.| .||||.++++.|+..|. ++.++|
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~   35 (255)
T 2q2v_A            2 LKGKTALVTGSTSGIGLGIAQVLARAGA-NIVLNG   35 (255)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEe
Confidence            4567888888 58999999999999997 477765

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=92.48  E-value=0.21  Score=46.78  Aligned_cols=36  Identities=22%  Similarity=0.374  Sum_probs=30.5

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .|.+++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus        13 ~l~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~   49 (291)
T 3rd5_A           13 SFAQRTVVITGANSGLGAVTARELARRGA-TVIMAVRD   49 (291)
T ss_dssp             CCTTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECC
Confidence            46788899998 68999999999999996 58887754

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=92.47  E-value=0.36  Score=45.05  Aligned_cols=37  Identities=19%  Similarity=0.283  Sum_probs=28.2

Q ss_pred             HHHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            7 LEAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         7 q~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ...|.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus        18 ~~~l~~k~~lVTGas~gIG~aia~~L~~~G~-~V~~~~r   55 (288)
T 2x9g_A           18 GSHMEAPAAVVTGAAKRIGRAIAVKLHQTGY-RVVIHYH   55 (288)
T ss_dssp             ----CCCEEEETTCSSHHHHHHHHHHHHHTC-EEEEEES
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEeC
Confidence            3457788888887 68999999999999996 4777763

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=92.46  E-value=0.44  Score=43.18  Aligned_cols=33  Identities=21%  Similarity=0.422  Sum_probs=27.1

Q ss_pred             hCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ..++++|.| .||||.++++.|+..|.. +.++|.
T Consensus         2 s~k~vlVTGas~GIG~a~a~~l~~~G~~-V~~~~r   35 (235)
T 3l6e_A            2 SLGHIIVTGAGSGLGRALTIGLVERGHQ-VSMMGR   35 (235)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            456788888 589999999999999974 777764

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=92.45  E-value=0.36  Score=43.52  Aligned_cols=77  Identities=16%  Similarity=0.236  Sum_probs=46.4

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEE-eCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHII-DMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~li-D~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      ++|+|.| .|+||.++++.|+..|.. +.++ +.+                   ..+.+.+++.+++..+  ++..+..+
T Consensus         2 k~vlVTGasggiG~~la~~l~~~G~~-v~~~~~r~-------------------~~~~~~~~~~~~~~~~--~~~~~~~D   59 (244)
T 1edo_A            2 PVVVVTGASRGIGKAIALSLGKAGCK-VLVNYARS-------------------AKAAEEVSKQIEAYGG--QAITFGGD   59 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSC-------------------HHHHHHHHHHHHHHTC--EEEEEECC
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCC-------------------HHHHHHHHHHHHhcCC--cEEEEeCC
Confidence            5678887 789999999999999975 4443 321                   1234444555554443  55666666


Q ss_pred             CCCCcchHhhh-------ccCcEEEEcc
Q 015243           91 VKDPKFNVEFF-------KQFNVVLNGL  111 (410)
Q Consensus        91 i~~~~~~~~~~-------~~~DvVi~a~  111 (410)
                      +++...-..++       .+.|+||++.
T Consensus        60 ~~~~~~~~~~~~~~~~~~g~id~li~~A   87 (244)
T 1edo_A           60 VSKEADVEAMMKTAIDAWGTIDVVVNNA   87 (244)
T ss_dssp             TTSHHHHHHHHHHHHHHSSCCSEEEECC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            65432222233       2578887753

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=92.43  E-value=0.24  Score=43.51  Aligned_cols=35  Identities=20%  Similarity=0.234  Sum_probs=29.1

Q ss_pred             hCCcEEEEC-CcHHHHHHHHHHHHhCC-CcEEEEeCC
Q 015243           11 KGAKVLMVG-AGGIGCELLKTLALSGF-QDIHIIDMD   45 (410)
Q Consensus        11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv-~~i~liD~D   45 (410)
                      +.++|+|.| .|++|.++++.|+..|. .++++++.+
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~   40 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARK   40 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSS
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            457899998 79999999999999996 477777643

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=92.43  E-value=0.4  Score=44.10  Aligned_cols=35  Identities=23%  Similarity=0.451  Sum_probs=29.2

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      |.+++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   40 (260)
T 1nff_A            5 LTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDIL   40 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            6678899998 68999999999999996 47777643

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=92.43  E-value=0.38  Score=45.09  Aligned_cols=31  Identities=35%  Similarity=0.579  Sum_probs=25.2

Q ss_pred             cEEEEC-CcHHHHHHHHHHHHh-CCCcEEEEeC
Q 015243           14 KVLMVG-AGGIGCELLKTLALS-GFQDIHIIDM   44 (410)
Q Consensus        14 ~VlvvG-~GgiG~ev~knLa~~-Gv~~i~liD~   44 (410)
                      +|+|.| .|.||+.+++.|+.. |-.+++++|.
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r   33 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDI   33 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEES
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence            589998 599999999999988 3246777774

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=92.42  E-value=0.32  Score=47.47  Aligned_cols=94  Identities=17%  Similarity=0.213  Sum_probs=62.7

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      .||.||| .|.+|.|+++.|...-.-+|..+               ...+..|+.=        .+..|...   ..-.+
T Consensus        14 ~~V~IvGAtG~vG~ellrlL~~hP~~el~~l---------------~S~~~aG~~~--------~~~~p~~~---~~l~~   67 (351)
T 1vkn_A           14 IRAGIIGATGYTGLELVRLLKNHPEAKITYL---------------SSRTYAGKKL--------EEIFPSTL---ENSIL   67 (351)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTEEEEEE---------------ECSTTTTSBH--------HHHCGGGC---CCCBC
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCcEEEEE---------------eCcccccCCh--------HHhChhhc---cCceE
Confidence            4799998 69999999999997754455543               2445567643        33344433   11112


Q ss_pred             CCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecc
Q 015243           92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT  136 (410)
Q Consensus        92 ~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~  136 (410)
                      .+. ...+++.++|+|+.|+..-.++.+...+   .+..+||.+.
T Consensus        68 ~~~-~~~~~~~~~Dvvf~alp~~~s~~~~~~~---~g~~VIDlSs  108 (351)
T 1vkn_A           68 SEF-DPEKVSKNCDVLFTALPAGASYDLVREL---KGVKIIDLGA  108 (351)
T ss_dssp             BCC-CHHHHHHHCSEEEECCSTTHHHHHHTTC---CSCEEEESSS
T ss_pred             EeC-CHHHhhcCCCEEEECCCcHHHHHHHHHh---CCCEEEECCh
Confidence            221 1234568899999999988888877766   6888998654

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=92.39  E-value=0.12  Score=49.15  Aligned_cols=36  Identities=25%  Similarity=0.475  Sum_probs=31.9

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .|.+++|+|+|+|++|..+++.|...|. +++++|..
T Consensus       154 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~  189 (300)
T 2rir_A          154 TIHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARS  189 (300)
T ss_dssp             CSTTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECC
Confidence            3678999999999999999999999997 78888843

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=92.39  E-value=0.38  Score=44.47  Aligned_cols=82  Identities=17%  Similarity=0.211  Sum_probs=50.9

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEE-EEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIH-IIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~-liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      .||.|+|+|.+|..+++.+...+- .+. ++|.+.-.                              ..++.+   ..++
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~-eLva~~d~~~~~------------------------------~~gv~v---~~dl   49 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGH-EIVGVIENTPKA------------------------------TTPYQQ---YQHI   49 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEECSSCC--------------------------------CCSCB---CSCT
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCC-EEEEEEecCccc------------------------------cCCCce---eCCH
Confidence            689999999999999999998775 554 34533210                              011111   1111


Q ss_pred             CCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCc
Q 015243           92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGF  139 (410)
Q Consensus        92 ~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~  139 (410)
                            +++. ++|+||+.+....+...+.   .++++|++. |+.|+
T Consensus        50 ------~~l~-~~DVvIDft~p~a~~~~~~---l~~g~~vVi-gTTG~   86 (243)
T 3qy9_A           50 ------ADVK-GADVAIDFSNPNLLFPLLD---EDFHLPLVV-ATTGE   86 (243)
T ss_dssp             ------TTCT-TCSEEEECSCHHHHHHHHT---SCCCCCEEE-CCCSS
T ss_pred             ------HHHh-CCCEEEEeCChHHHHHHHH---HhcCCceEe-CCCCC
Confidence                  2334 8999999774333333332   678999985 55565

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=92.39  E-value=0.63  Score=43.60  Aligned_cols=37  Identities=19%  Similarity=0.248  Sum_probs=27.0

Q ss_pred             HHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ..-..++|+|.| .|+||+.+++.|+..|. +++++|.+
T Consensus         8 ~~~~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~   45 (321)
T 2pk3_A            8 HHHGSMRALITGVAGFVGKYLANHLTEQNV-EVFGTSRN   45 (321)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cccCcceEEEECCCChHHHHHHHHHHHCCC-EEEEEecC
Confidence            345567888887 69999999999999995 67777743

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=92.37  E-value=0.11  Score=49.19  Aligned_cols=33  Identities=21%  Similarity=0.314  Sum_probs=29.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ..+|+|+|+|++|+.++..|++.|. .++++|.+
T Consensus         2 ~mkI~iiGaGa~G~~~a~~L~~~g~-~V~~~~r~   34 (294)
T 3g17_A            2 SLSVAIIGPGAVGTTIAYELQQSLP-HTTLIGRH   34 (294)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHHCT-TCEEEESS
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEec
Confidence            4689999999999999999999995 68898866

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=92.36  E-value=0.29  Score=46.12  Aligned_cols=82  Identities=16%  Similarity=0.231  Sum_probs=50.3

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      +|.+++++|.| .||||.++++.|+..|.. +.++|.+.                 ...+.+.+++.+.+..  .++..+
T Consensus        46 ~l~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~~~~~-----------------~~~~~~~~~~~~~~~~--~~~~~~  105 (294)
T 3r3s_A           46 RLKDRKALVTGGDSGIGRAAAIAYAREGAD-VAINYLPA-----------------EEEDAQQVKALIEECG--RKAVLL  105 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECCGG-----------------GHHHHHHHHHHHHHTT--CCEEEC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCc-----------------chhHHHHHHHHHHHcC--CcEEEE
Confidence            46788999998 689999999999999975 66665321                 0123344444454443  345556


Q ss_pred             ccCCCCCcchHhh-------hccCcEEEEc
Q 015243           88 HANVKDPKFNVEF-------FKQFNVVLNG  110 (410)
Q Consensus        88 ~~~i~~~~~~~~~-------~~~~DvVi~a  110 (410)
                      ..++++...-..+       +.+.|++|++
T Consensus       106 ~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~n  135 (294)
T 3r3s_A          106 PGDLSDESFARSLVHKAREALGGLDILALV  135 (294)
T ss_dssp             CCCTTSHHHHHHHHHHHHHHHTCCCEEEEC
T ss_pred             EecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            5666443222222       2366777774

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=92.34  E-value=0.32  Score=45.24  Aligned_cols=34  Identities=24%  Similarity=0.404  Sum_probs=28.5

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      |.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   38 (280)
T 1xkq_A            4 FSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGR   38 (280)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            5677888887 68999999999999996 4777774

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=92.32  E-value=0.39  Score=45.76  Aligned_cols=93  Identities=22%  Similarity=0.283  Sum_probs=55.6

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .|.+++++|.| .||||.++++.|+..|.. +.++|.+.-. .++.    +.  .-...+.+.+.+.+.+..  .++..+
T Consensus        43 ~l~gk~~lVTGas~GIG~aia~~la~~G~~-Vv~~~~~~~~-~~~~----~~--~~~~~~~~~~~~~~~~~~--~~~~~~  112 (317)
T 3oec_A           43 RLQGKVAFITGAARGQGRTHAVRLAQDGAD-IVAIDLCRQQ-PNLD----YA--QGSPEELKETVRLVEEQG--RRIIAR  112 (317)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEECCCCC-TTCC----SC--CCCHHHHHHHHHHHHHTT--CCEEEE
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCe-EEEEeccccc-cccc----cc--ccCHHHHHHHHHHHHhcC--CeEEEE
Confidence            46777888887 689999999999999975 7777754311 1111    00  011234444455555543  356667


Q ss_pred             ccCCCCCcchHhhh-------ccCcEEEEcc
Q 015243           88 HANVKDPKFNVEFF-------KQFNVVLNGL  111 (410)
Q Consensus        88 ~~~i~~~~~~~~~~-------~~~DvVi~a~  111 (410)
                      ..++++...-..++       .+.|++|++.
T Consensus       113 ~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnA  143 (317)
T 3oec_A          113 QADVRDLASLQAVVDEALAEFGHIDILVSNV  143 (317)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            77775543222332       3678888853

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=92.30  E-value=0.36  Score=45.04  Aligned_cols=33  Identities=33%  Similarity=0.352  Sum_probs=27.1

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      +.+++|+|.| .|+||.++++.|+..|. ++.+++
T Consensus        42 l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~   75 (285)
T 2c07_A           42 GENKVALVTGAGRGIGREIAKMLAKSVS-HVICIS   75 (285)
T ss_dssp             CSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEc
Confidence            4567899997 68999999999999986 466665

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=92.28  E-value=0.12  Score=49.41  Aligned_cols=33  Identities=24%  Similarity=0.448  Sum_probs=28.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ..+|+|+|+|++|+.++..|++.|. .++++|.+
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~   34 (320)
T 3i83_A            2 SLNILVIGTGAIGSFYGALLAKTGH-CVSVVSRS   34 (320)
T ss_dssp             -CEEEEESCCHHHHHHHHHHHHTTC-EEEEECST
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            4689999999999999999999995 68887744

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=92.26  E-value=0.4  Score=43.36  Aligned_cols=32  Identities=16%  Similarity=0.357  Sum_probs=27.0

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +++++|.| .|+||.++++.|+..|. ++.++|.
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~-~V~~~~r   34 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGD-RVAALDL   34 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            46788997 68999999999999995 5888774

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=92.24  E-value=0.17  Score=50.14  Aligned_cols=99  Identities=14%  Similarity=0.220  Sum_probs=57.6

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCC-------cEEEEeCCccCcccCccccCCCCCCC-CchHHHHHHHHHHh------hC
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQ-------DIHIIDMDTIEVSNLNRQFLFRQSHV-GQSKAKVARDAVLK------FR   79 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~-------~i~liD~D~Ve~sNL~Rq~lf~~~di-G~~Ka~~a~~~l~~------~n   79 (410)
                      ||.|+|+|+.|+.+++.|+..|-+       .++|--               ++.++ ++.-    .+.+++      +-
T Consensus        36 KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~---------------r~~e~~~~~~----~e~in~~~~N~~YL   96 (391)
T 4fgw_A           36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWV---------------FEEEINGEKL----TEIINTRHQNVKYL   96 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEEC---------------CCCBSSSCBH----HHHHTTTCCBTTTB
T ss_pred             eEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEE---------------cchHhhhHHH----HHHHHhcCcCcccC
Confidence            899999999999999999998742       255532               22221 2211    122221      11


Q ss_pred             CCCeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHH--CCCcEEEe
Q 015243           80 PQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA--ADVPLVES  134 (410)
Q Consensus        80 p~v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~--~~~p~i~~  134 (410)
                      |++++   +.++.-.....+.++++|+||.++.+...|..+.++...  .+.|+|.+
T Consensus        97 pgv~L---p~~i~~t~dl~~al~~ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~  150 (391)
T 4fgw_A           97 PGITL---PDNLVANPDLIDSVKDVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISC  150 (391)
T ss_dssp             TTCCC---CSSEEEESCHHHHHTTCSEEEECSCGGGHHHHHHHHTTTSCTTCEEEEC
T ss_pred             CCCcC---CCCcEEeCCHHHHHhcCCEEEEECChhhhHHHHHHhccccCCCceeEEe
Confidence            33322   111110011235678999999999988888877776422  34566654

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=92.20  E-value=0.26  Score=46.06  Aligned_cols=35  Identities=23%  Similarity=0.470  Sum_probs=26.7

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .|.+++++|.| .||||.++++.|+..|.. +.++|.
T Consensus        30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~r   65 (281)
T 4dry_A           30 SGEGRIALVTGGGTGVGRGIAQALSAEGYS-VVITGR   65 (281)
T ss_dssp             ----CEEEETTTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            46778888887 689999999999999974 777774

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=92.15  E-value=0.35  Score=45.03  Aligned_cols=34  Identities=26%  Similarity=0.418  Sum_probs=28.5

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus        27 l~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r   61 (276)
T 2b4q_A           27 LAGRIALVTGGSRGIGQMIAQGLLEAGA-RVFICAR   61 (276)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            5677899998 58999999999999996 4777764

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=92.14  E-value=0.55  Score=47.72  Aligned_cols=31  Identities=19%  Similarity=0.405  Sum_probs=27.7

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ++|.|||+|.+|+.++.+|+..|. +++++|.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~-~V~v~dr   33 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGF-VVCAFNR   33 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECS
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCC-eEEEEeC
Confidence            589999999999999999999997 4888764

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=92.13  E-value=0.28  Score=45.67  Aligned_cols=80  Identities=10%  Similarity=0.203  Sum_probs=47.4

Q ss_pred             HHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEE
Q 015243            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (410)
Q Consensus         8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~   86 (410)
                      ..|. ++++|.| .||||.++++.|+..|. ++.++|.+.                   .+.+.+++.+...   .++..
T Consensus        18 ~~~~-k~vlVTGas~gIG~aia~~La~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~---~~~~~   73 (272)
T 2nwq_A           18 SHMS-STLFITGATSGFGEACARRFAEAGW-SLVLTGRRE-------------------ERLQALAGELSAK---TRVLP   73 (272)
T ss_dssp             ---C-CEEEESSTTTSSHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHTTT---SCEEE
T ss_pred             CCcC-cEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHHhhcC---CcEEE
Confidence            4555 6788887 67999999999999996 477776431                   2333333333322   35666


Q ss_pred             EccCCCCCcchHhhh-------ccCcEEEEcc
Q 015243           87 HHANVKDPKFNVEFF-------KQFNVVLNGL  111 (410)
Q Consensus        87 ~~~~i~~~~~~~~~~-------~~~DvVi~a~  111 (410)
                      +..++++...-..++       .+.|++|++.
T Consensus        74 ~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnA  105 (272)
T 2nwq_A           74 LTLDVRDRAAMSAAVDNLPEEFATLRGLINNA  105 (272)
T ss_dssp             EECCTTCHHHHHHHHHTCCGGGSSCCEEEECC
T ss_pred             EEcCCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            666665432222222       3458888853

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=92.12  E-value=0.37  Score=44.18  Aligned_cols=34  Identities=24%  Similarity=0.416  Sum_probs=28.0

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      |.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   37 (260)
T 2qq5_A            3 MNGQVCVVTGASRGIGRGIALQLCKAGA-TVYITGR   37 (260)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            5677788887 78999999999999996 5777763

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=92.12  E-value=0.53  Score=43.06  Aligned_cols=80  Identities=21%  Similarity=0.267  Sum_probs=48.3

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      +++++|.| .||||.++++.|+..|.. +.++|.+.-                 +...+.+++.+.+..  .++..+..+
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~-----------------~~~~~~~~~~~~~~~--~~~~~~~~D   61 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFD-IAVADLPQQ-----------------EEQAAETIKLIEAAD--QKAVFVGLD   61 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECGGG-----------------HHHHHHHHHHHHTTT--CCEEEEECC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCcc-----------------hHHHHHHHHHHHhcC--CcEEEEEcc
Confidence            46788887 689999999999999964 777663210                 001333444454433  345566666


Q ss_pred             CCCCcchHhhh-------ccCcEEEEcc
Q 015243           91 VKDPKFNVEFF-------KQFNVVLNGL  111 (410)
Q Consensus        91 i~~~~~~~~~~-------~~~DvVi~a~  111 (410)
                      +++...-..++       .+.|++|++.
T Consensus        62 v~~~~~v~~~~~~~~~~~g~iD~lv~nA   89 (258)
T 3a28_C           62 VTDKANFDSAIDEAAEKLGGFDVLVNNA   89 (258)
T ss_dssp             TTCHHHHHHHHHHHHHHHTCCCEEEECC
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            65432222222       3678888753

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=92.11  E-value=0.13  Score=49.61  Aligned_cols=32  Identities=34%  Similarity=0.535  Sum_probs=28.3

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      ...||+|||+|++|+.++..|+..|. .++++|
T Consensus         2 ~~mkI~IiGaG~~G~~~a~~L~~~g~-~V~~~~   33 (335)
T 3ghy_A            2 SLTRICIVGAGAVGGYLGARLALAGE-AINVLA   33 (335)
T ss_dssp             CCCCEEEESCCHHHHHHHHHHHHTTC-CEEEEC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEE
Confidence            35799999999999999999999996 588876

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=92.10  E-value=0.62  Score=49.03  Aligned_cols=105  Identities=18%  Similarity=0.298  Sum_probs=63.5

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHh-CCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~-Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      ++.++|+|.| .|.||+++++.|+.. |. +++++|...-   .+.+ .                      ....+++.+
T Consensus       313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~-~V~~~~r~~~---~~~~-~----------------------~~~~~v~~v  365 (660)
T 1z7e_A          313 RRRTRVLILGVNGFIGNHLTERLLREDHY-EVYGLDIGSD---AISR-F----------------------LNHPHFHFV  365 (660)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHSSSE-EEEEEESCCT---TTGG-G----------------------TTCTTEEEE
T ss_pred             ccCceEEEEcCCcHHHHHHHHHHHhcCCC-EEEEEEcCch---hhhh-h----------------------ccCCceEEE
Confidence            5677899998 699999999999998 64 6777775321   1110 0                      001245555


Q ss_pred             ccCCCCCc-chHhhhccCcEEEEccC--C---------------hHHHHHHHHHHHHCCCcEEEecccCccc
Q 015243           88 HANVKDPK-FNVEFFKQFNVVLNGLD--N---------------LDARRHVNRLCLAADVPLVESGTTGFLG  141 (410)
Q Consensus        88 ~~~i~~~~-~~~~~~~~~DvVi~a~D--n---------------~~~r~~i~~~c~~~~~p~i~~g~~G~~G  141 (410)
                      ..++++.. .....++++|+||.+..  +               ...-..+-+.|.+.+..+|..++.+.+|
T Consensus       366 ~~Dl~d~~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~r~V~~SS~~vyg  437 (660)
T 1z7e_A          366 EGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYG  437 (660)
T ss_dssp             ECCTTTCHHHHHHHHHHCSEEEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGB
T ss_pred             ECCCCCcHHHHHHhhcCCCEEEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhCCEEEEEecHHHcC
Confidence            66665432 12345678899998532  1               1122345566777777788877665544

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=92.09  E-value=0.24  Score=46.21  Aligned_cols=32  Identities=31%  Similarity=0.558  Sum_probs=27.3

Q ss_pred             cEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           14 KVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        14 ~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +|+|.|+ |.+|+.+++.|+..|..+++++|..
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~   33 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNL   33 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECC
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccC
Confidence            5899996 9999999999999996678887753

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=92.08  E-value=0.67  Score=44.06  Aligned_cols=74  Identities=18%  Similarity=0.239  Sum_probs=47.8

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCC-cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh---hCCCCeEEEE
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK---FRPQMSITAH   87 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~-~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~---~np~v~i~~~   87 (410)
                      .||+|+| +|.+|..++..|+..|.. ++.|+|.    +.|             ..|++..+.-+.+   ....+++.. 
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di----~~~-------------~~~~~~~~~dl~~~~~~~~~~~v~~-   62 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI----PDK-------------EDDTVGQAADTNHGIAYDSNTRVRQ-   62 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC----GGG-------------HHHHHHHHHHHHHHHTTTCCCEEEE-
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcC----CCC-------------hhhHHHHHHHHHHHHhhCCCcEEEe-
Confidence            4799999 999999999999988864 5888884    001             1122222223333   345666665 


Q ss_pred             ccCCCCCcchHhhhccCcEEEEccC
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                       ..       .+-++++|+||.+..
T Consensus        63 -~~-------~~a~~~aDvVi~~ag   79 (303)
T 1o6z_A           63 -GG-------YEDTAGSDVVVITAG   79 (303)
T ss_dssp             -CC-------GGGGTTCSEEEECCC
T ss_pred             -CC-------HHHhCCCCEEEEcCC
Confidence             11       234789999998753

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=92.07  E-value=0.7  Score=44.07  Aligned_cols=31  Identities=29%  Similarity=0.397  Sum_probs=25.6

Q ss_pred             cEEEEC-CcHHHHHHHHHHHHh-CCCcEEEEeCC
Q 015243           14 KVLMVG-AGGIGCELLKTLALS-GFQDIHIIDMD   45 (410)
Q Consensus        14 ~VlvvG-~GgiG~ev~knLa~~-Gv~~i~liD~D   45 (410)
                      +|+|.| .|+||..+++.|+.. |. +++++|..
T Consensus         2 kvlVTGasG~iG~~l~~~L~~~~g~-~V~~~~r~   34 (361)
T 1kew_A            2 KILITGGAGFIGSAVVRHIIKNTQD-TVVNIDKL   34 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSC-EEEEEECC
T ss_pred             EEEEECCCchHhHHHHHHHHhcCCC-eEEEEecC
Confidence            699998 599999999999997 44 57777743

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=92.07  E-value=0.42  Score=46.23  Aligned_cols=37  Identities=16%  Similarity=0.125  Sum_probs=26.7

Q ss_pred             HHhCCcEEEECCcHHHH-HHHHHHHHh-CCCcEEEEeCC
Q 015243            9 AIKGAKVLMVGAGGIGC-ELLKTLALS-GFQDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~-ev~knLa~~-Gv~~i~liD~D   45 (410)
                      .++..||.|||+|.+|. ..+..|... |+.-+.+.|.+
T Consensus        24 ~m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~   62 (350)
T 3rc1_A           24 NANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRR   62 (350)
T ss_dssp             --CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESS
T ss_pred             CCCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCC
Confidence            35567999999999999 789999887 44433466643

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=92.03  E-value=0.58  Score=47.51  Aligned_cols=31  Identities=29%  Similarity=0.514  Sum_probs=27.5

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ++|.|||+|.+|+.++.+|+..|. +++++|.
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~-~V~v~dr   32 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGF-KVAVFNR   32 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECS
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCC-EEEEEeC
Confidence            479999999999999999999997 4888764

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=92.01  E-value=0.39  Score=44.54  Aligned_cols=81  Identities=20%  Similarity=0.251  Sum_probs=49.1

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      .|.+++++|.| .||||.++++.|+..|.. +.++|..                  ...+.+.+.+.+.+...  ++..+
T Consensus        25 ~l~~k~vlVTGas~gIG~aia~~la~~G~~-V~~~~~~------------------~~~~~~~~~~~~~~~~~--~~~~~   83 (269)
T 4dmm_A           25 PLTDRIALVTGASRGIGRAIALELAAAGAK-VAVNYAS------------------SAGAADEVVAAIAAAGG--EAFAV   83 (269)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESS------------------CHHHHHHHHHHHHHTTC--CEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCC------------------ChHHHHHHHHHHHhcCC--cEEEE
Confidence            35677888887 689999999999999975 6665521                  12244455555555433  45555


Q ss_pred             ccCCCCCcchHhhh-------ccCcEEEEc
Q 015243           88 HANVKDPKFNVEFF-------KQFNVVLNG  110 (410)
Q Consensus        88 ~~~i~~~~~~~~~~-------~~~DvVi~a  110 (410)
                      ..++++...-..++       .+.|++|++
T Consensus        84 ~~D~~d~~~v~~~~~~~~~~~g~id~lv~n  113 (269)
T 4dmm_A           84 KADVSQESEVEALFAAVIERWGRLDVLVNN  113 (269)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            56665432222222       256776664

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=92.00  E-value=0.45  Score=44.67  Aligned_cols=99  Identities=18%  Similarity=0.264  Sum_probs=57.9

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHh-CCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC-CCCeEEEEc
Q 015243           12 GAKVLMVGA-GGIGCELLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR-PQMSITAHH   88 (410)
Q Consensus        12 ~~~VlvvG~-GgiG~ev~knLa~~-Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~n-p~v~i~~~~   88 (410)
                      +.||.|+|+ |.+|..+++.+... |+.=.-++|.+.-.   +      ...|+|..         .... ..+.+  . 
T Consensus         5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~---~------~g~d~~~~---------~g~~~~~v~~--~-   63 (273)
T 1dih_A            5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSS---L------LGSDAGEL---------AGAGKTGVTV--Q-   63 (273)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCT---T------CSCCTTCS---------SSSSCCSCCE--E-
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchh---h------hhhhHHHH---------cCCCcCCcee--c-
Confidence            468999999 99999999998753 43222255643210   0      01122110         0000 11222  1 


Q ss_pred             cCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCc
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGF  139 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~  139 (410)
                      .++      .+.+.++|+||+.+ ++++-...-..|.++++|++-+-+ |+
T Consensus        64 ~dl------~~~l~~~DvVIDft-~p~~~~~~~~~a~~~G~~vVigTt-G~  106 (273)
T 1dih_A           64 SSL------DAVKDDFDVFIDFT-RPEGTLNHLAFCRQHGKGMVIGTT-GF  106 (273)
T ss_dssp             SCS------TTTTTSCSEEEECS-CHHHHHHHHHHHHHTTCEEEECCC-CC
T ss_pred             CCH------HHHhcCCCEEEEcC-ChHHHHHHHHHHHhCCCCEEEECC-CC
Confidence            122      13446789999987 567777788899999999776544 44

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=91.98  E-value=0.12  Score=49.42  Aligned_cols=33  Identities=30%  Similarity=0.435  Sum_probs=27.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ..||+|+|+|++|+.++..|++.|. .++++|.+
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~   34 (312)
T 3hn2_A            2 SLRIAIVGAGALGLYYGALLQRSGE-DVHFLLRR   34 (312)
T ss_dssp             --CEEEECCSTTHHHHHHHHHHTSC-CEEEECST
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCC-eEEEEEcC
Confidence            3689999999999999999999995 58887643

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=91.88  E-value=0.37  Score=45.46  Aligned_cols=82  Identities=20%  Similarity=0.336  Sum_probs=50.0

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC-CCeEEEE
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP-QMSITAH   87 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np-~v~i~~~   87 (410)
                      +.+++++|.| .||||.++++.|+..|. ++.++|.+.                   .+.+.+++.+.+... ..++..+
T Consensus        24 l~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~~   83 (297)
T 1xhl_A           24 FSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNE-------------------DRLEETKQQILKAGVPAEKINAV   83 (297)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTTCCGGGEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcCCCCceEEEE
Confidence            5667788887 68999999999999997 477776321                   233444444444321 1145566


Q ss_pred             ccCCCCCcchHhhh-------ccCcEEEEcc
Q 015243           88 HANVKDPKFNVEFF-------KQFNVVLNGL  111 (410)
Q Consensus        88 ~~~i~~~~~~~~~~-------~~~DvVi~a~  111 (410)
                      ..++++......++       .+.|+||++.
T Consensus        84 ~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnA  114 (297)
T 1xhl_A           84 VADVTEASGQDDIINTTLAKFGKIDILVNNA  114 (297)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             ecCCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            66665432222222       3678888753

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=91.88  E-value=0.35  Score=44.51  Aligned_cols=33  Identities=15%  Similarity=0.283  Sum_probs=28.0

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHII   42 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~li   42 (410)
                      +|.+++++|.| .||||.++++.|+..|.. +.++
T Consensus         5 ~l~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~   38 (259)
T 3edm_A            5 RFTNRTIVVAGAGRDIGRACAIRFAQEGAN-VVLT   38 (259)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEE
Confidence            57788999998 679999999999999975 5555

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=91.86  E-value=0.37  Score=44.56  Aligned_cols=81  Identities=16%  Similarity=0.299  Sum_probs=50.2

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      +|.+++++|.| .||||.++++.|+..|.. +.++|...                  ..+.+.+++.+++..+  ++..+
T Consensus        15 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~~~~------------------~~~~~~~~~~~~~~~~--~~~~~   73 (270)
T 3is3_A           15 RLDGKVALVTGSGRGIGAAVAVHLGRLGAK-VVVNYANS------------------TKDAEKVVSEIKALGS--DAIAI   73 (270)
T ss_dssp             CCTTCEEEESCTTSHHHHHHHHHHHHTTCE-EEEEESSC------------------HHHHHHHHHHHHHTTC--CEEEE
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCC------------------HHHHHHHHHHHHhcCC--cEEEE
Confidence            46778888887 679999999999999974 66655321                  1234445555555443  45556


Q ss_pred             ccCCCCCcchHhh-------hccCcEEEEc
Q 015243           88 HANVKDPKFNVEF-------FKQFNVVLNG  110 (410)
Q Consensus        88 ~~~i~~~~~~~~~-------~~~~DvVi~a  110 (410)
                      ..++++...-..+       +.+.|++|++
T Consensus        74 ~~Dv~~~~~v~~~~~~~~~~~g~id~lvnn  103 (270)
T 3is3_A           74 KADIRQVPEIVKLFDQAVAHFGHLDIAVSN  103 (270)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCCEEECC
T ss_pred             EcCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            6666543222222       2356777774

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=91.86  E-value=0.43  Score=43.98  Aligned_cols=81  Identities=10%  Similarity=0.108  Sum_probs=50.8

Q ss_pred             HHhCCcEEEECCc---HHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEE
Q 015243            9 AIKGAKVLMVGAG---GIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSIT   85 (410)
Q Consensus         9 ~L~~~~VlvvG~G---giG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~   85 (410)
                      .|+++.++|-|++   |||-++++.|+..|. ++.++|.+.                   .+.+.+++.+.+... .++.
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~-------------------~~~~~~~~~~~~~~~-~~~~   61 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKE-------------------RSRKELEKLLEQLNQ-PEAH   61 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSG-------------------GGHHHHHHHHGGGTC-SSCE
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHHHHhcCC-CcEE
Confidence            3678899999974   899999999999997 488877331                   223445555666542 3445


Q ss_pred             EEccCCCCCcchH-------hhhccCcEEEEc
Q 015243           86 AHHANVKDPKFNV-------EFFKQFNVVLNG  110 (410)
Q Consensus        86 ~~~~~i~~~~~~~-------~~~~~~DvVi~a  110 (410)
                      .+..++++...-.       +-+.+.|++|+.
T Consensus        62 ~~~~Dv~~~~~v~~~~~~~~~~~G~iD~lvnn   93 (256)
T 4fs3_A           62 LYQIDVQSDEEVINGFEQIGKDVGNIDGVYHS   93 (256)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHCCCSEEEEC
T ss_pred             EEEccCCCHHHHHHHHHHHHHHhCCCCEEEec
Confidence            5555554332111       123456766664

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=91.85  E-value=0.35  Score=43.76  Aligned_cols=35  Identities=20%  Similarity=0.399  Sum_probs=29.2

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .+.+++|+|.| .|+||.++++.|+..|.. +.++|.
T Consensus         3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~-V~~~~r   38 (251)
T 1zk4_A            3 RLDGKVAIITGGTLGIGLAIATKFVEEGAK-VMITGR   38 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence            36778899987 689999999999999964 777764

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=91.82  E-value=0.19  Score=48.58  Aligned_cols=93  Identities=18%  Similarity=0.134  Sum_probs=58.7

Q ss_pred             HHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEE
Q 015243            7 LEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (410)
Q Consensus         7 q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~   86 (410)
                      ...|..++|.|||+|.+|..++++|...|+ ++++.|.+.                   .++.   +...+.  ++.+. 
T Consensus        11 ~~~l~~~~I~IIG~G~mG~alA~~L~~~G~-~V~~~~~~~-------------------~~~~---~~a~~~--G~~~~-   64 (338)
T 1np3_A           11 LSIIQGKKVAIIGYGSQGHAHACNLKDSGV-DVTVGLRSG-------------------SATV---AKAEAH--GLKVA-   64 (338)
T ss_dssp             HHHHHTSCEEEECCSHHHHHHHHHHHHTTC-CEEEECCTT-------------------CHHH---HHHHHT--TCEEE-
T ss_pred             cchhcCCEEEEECchHHHHHHHHHHHHCcC-EEEEEECCh-------------------HHHH---HHHHHC--CCEEc-
Confidence            356889999999999999999999999997 477766331                   1111   111222  22221 


Q ss_pred             EccCCCCCcchHhhhccCcEEEEccCChHHHHHHH-HHHHH--CCCcEEEe
Q 015243           87 HHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVN-RLCLA--ADVPLVES  134 (410)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~-~~c~~--~~~p~i~~  134 (410)
                         .      ..+.++++|+|+.|+.....+..+. ++...  .+..++++
T Consensus        65 ---~------~~e~~~~aDvVilavp~~~~~~v~~~~i~~~l~~~~ivi~~  106 (338)
T 1np3_A           65 ---D------VKTAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFA  106 (338)
T ss_dssp             ---C------HHHHHHTCSEEEECSCHHHHHHHHHHHTGGGCCTTCEEEES
T ss_pred             ---c------HHHHHhcCCEEEEeCCcHHHHHHHHHHHHhhCCCCCEEEEc
Confidence               1      2356789999999997665555555 43222  24456654

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=91.75  E-value=0.096  Score=49.45  Aligned_cols=32  Identities=28%  Similarity=0.466  Sum_probs=29.4

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      +.+++++|+|+||+|..+++.|+..|  +++++|
T Consensus       126 l~~k~vlV~GaGgiG~aia~~L~~~G--~V~v~~  157 (287)
T 1nvt_A          126 VKDKNIVIYGAGGAARAVAFELAKDN--NIIIAN  157 (287)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHTSSS--EEEEEC
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCC--CEEEEE
Confidence            56789999999999999999999999  899876

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=91.74  E-value=0.16  Score=47.27  Aligned_cols=94  Identities=16%  Similarity=0.224  Sum_probs=56.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~   92 (410)
                      ++|.|+|+|.+|+.++..|+..|. +++++|.+.-....+....     .-|.               .......   .+
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~~~~~~l~~~~-----~~~~---------------~~~~~~~---~~   56 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSVNLVE-----TDGS---------------IFNESLT---AN   56 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEEEEEC-----TTSC---------------EEEEEEE---ES
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCC-CEEEEEcCccceeeEEEEc-----CCCc---------------eeeeeee---ec
Confidence            379999999999999999999996 6899886542111111110     0010               0011111   11


Q ss_pred             CCcchHhhhccCcEEEEccCChHHHHHHHHHHHH--CCCcEEEe
Q 015243           93 DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA--ADVPLVES  134 (410)
Q Consensus        93 ~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~--~~~p~i~~  134 (410)
                          +.+..+++|+||.|+-....+..+..+...  .+..+++.
T Consensus        57 ----~~~~~~~~d~vi~~v~~~~~~~v~~~l~~~l~~~~~vv~~   96 (291)
T 1ks9_A           57 ----DPDFLATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLI   96 (291)
T ss_dssp             ----CHHHHHTCSEEEECSCGGGHHHHHHHHHTTSCTTSCEEEE
T ss_pred             ----CccccCCCCEEEEEecHHhHHHHHHHHHhhCCCCCEEEEe
Confidence                124567899999999877766666554432  24456664

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=91.73  E-value=0.23  Score=48.07  Aligned_cols=32  Identities=25%  Similarity=0.334  Sum_probs=27.5

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ++|+|.|+ |.||..+++.|+..|. +++++|..
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~-~V~~~~r~   61 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGY-EVHGLIRR   61 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC-EEEEEecC
Confidence            58999996 9999999999999995 67777754

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=91.72  E-value=0.14  Score=49.71  Aligned_cols=33  Identities=27%  Similarity=0.369  Sum_probs=29.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +.||+|||+|..|..+|-.|++.|+. ++|+|.+
T Consensus         1 sm~V~IVGaGpaGl~~A~~L~~~G~~-v~v~Er~   33 (412)
T 4hb9_A            1 SMHVGIIGAGIGGTCLAHGLRKHGIK-VTIYERN   33 (412)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCC-EEEEecC
Confidence            47999999999999999999999985 8898854

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=91.70  E-value=0.24  Score=46.36  Aligned_cols=30  Identities=27%  Similarity=0.499  Sum_probs=26.7

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      .+|.|||+|.+|+.+++.|+..|. +++++|
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~   33 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGH-QLHVTT   33 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTC-EEEECC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCC-EEEEEc
Confidence            589999999999999999999986 577766

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=91.69  E-value=0.74  Score=44.47  Aligned_cols=33  Identities=33%  Similarity=0.464  Sum_probs=29.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +.+|+|.|+|++|...+..+..+|...+..+|.
T Consensus       180 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  212 (363)
T 3m6i_A          180 GDPVLICGAGPIGLITMLCAKAAGACPLVITDI  212 (363)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCSEEEEES
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            578999999999999999998999988888873

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=91.68  E-value=1.1  Score=42.36  Aligned_cols=30  Identities=37%  Similarity=0.579  Sum_probs=25.2

Q ss_pred             cEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           14 KVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        14 ~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +|+|.| .|+||..+++.|+..|. +++++|.
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~~   32 (338)
T 1udb_A            2 RVLVTGGSGYIGSHTCVQLLQNGH-DVIILDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC-EEEEEec
Confidence            689998 59999999999999995 4666663

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=91.63  E-value=0.38  Score=44.61  Aligned_cols=35  Identities=31%  Similarity=0.649  Sum_probs=29.8

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .+.+++++|.| .||||.++++.|+..|.. +.++|.
T Consensus        27 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~-Vi~~~r   62 (281)
T 3ppi_A           27 QFEGASAIVSGGAGGLGEATVRRLHADGLG-VVIADL   62 (281)
T ss_dssp             GGTTEEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence            57788899998 589999999999999974 778774

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=91.63  E-value=0.7  Score=44.25  Aligned_cols=34  Identities=21%  Similarity=0.297  Sum_probs=27.3

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      .|.+++++|.| .||||.++++.|+..|. ++.++|
T Consensus        43 ~l~~k~~lVTGas~GIG~aia~~La~~G~-~Vv~~~   77 (328)
T 2qhx_A           43 APTVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHY   77 (328)
T ss_dssp             --CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEc
Confidence            36777888887 78999999999999996 477766

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=91.63  E-value=0.35  Score=44.56  Aligned_cols=79  Identities=24%  Similarity=0.345  Sum_probs=49.1

Q ss_pred             hCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEE-eCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHII-DMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~li-D~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      ++++++|.| .||||.++++.|+..|.. +.++ +.+                   ..+.+.+++.+.+..  .++..+.
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~-vv~~~~r~-------------------~~~~~~~~~~~~~~~--~~~~~~~   60 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYN-IVINYARS-------------------KKAALETAEEIEKLG--VKVLVVK   60 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESSC-------------------HHHHHHHHHHHHTTT--CCEEEEE
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCE-EEEEcCCC-------------------HHHHHHHHHHHHhcC--CcEEEEE
Confidence            356777777 689999999999999975 4443 311                   234555556665544  3566666


Q ss_pred             cCCCCCcchHhhh-------ccCcEEEEcc
Q 015243           89 ANVKDPKFNVEFF-------KQFNVVLNGL  111 (410)
Q Consensus        89 ~~i~~~~~~~~~~-------~~~DvVi~a~  111 (410)
                      .++++...-..++       .+.|++|++.
T Consensus        61 ~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA   90 (258)
T 3oid_A           61 ANVGQPAKIKEMFQQIDETFGRLDVFVNNA   90 (258)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            6665433222222       3568888754

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=91.59  E-value=0.34  Score=44.38  Aligned_cols=35  Identities=26%  Similarity=0.520  Sum_probs=29.0

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      |.+++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   38 (254)
T 1hdc_A            3 LSGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVL   38 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5678899998 58999999999999996 47777643

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=91.58  E-value=0.65  Score=44.32  Aligned_cols=32  Identities=34%  Similarity=0.530  Sum_probs=27.7

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCC-CcEEEEeC
Q 015243           13 AKVLMVGA-GGIGCELLKTLALSGF-QDIHIIDM   44 (410)
Q Consensus        13 ~~VlvvG~-GgiG~ev~knLa~~Gv-~~i~liD~   44 (410)
                      .||+|+|+ |.+|+.++..|+..|. ..+.|+|.
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di   34 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGR   34 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEEC
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcC
Confidence            37999999 9999999999998886 45888884

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=91.54  E-value=0.73  Score=43.49  Aligned_cols=90  Identities=17%  Similarity=0.179  Sum_probs=50.6

Q ss_pred             HhCCcEEEECCcHHHHH-HHHHHHHh-CCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243           10 IKGAKVLMVGAGGIGCE-LLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~e-v~knLa~~-Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      ++..||.|||+|.+|.. .++.|... |+.-+.+.|.+                   ..|++.+++..   .  +..   
T Consensus         4 M~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~-------------------~~~~~~~a~~~---~--~~~---   56 (308)
T 3uuw_A            4 MKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPN-------------------KVKREKICSDY---R--IMP---   56 (308)
T ss_dssp             -CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSC-------------------HHHHHHHHHHH---T--CCB---
T ss_pred             cccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCC-------------------HHHHHHHHHHc---C--CCC---
Confidence            45679999999999996 88888764 44433366632                   23344333322   1  110   


Q ss_pred             ccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEE
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVE  133 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~  133 (410)
                         .+  . .++.+.+.|+|+.|+.+..- ..+...|.+.+++++.
T Consensus        57 ---~~--~-~~~ll~~~D~V~i~tp~~~h-~~~~~~al~~gk~vl~   95 (308)
T 3uuw_A           57 ---FD--S-IESLAKKCDCIFLHSSTETH-YEIIKILLNLGVHVYV   95 (308)
T ss_dssp             ---CS--C-HHHHHTTCSEEEECCCGGGH-HHHHHHHHHTTCEEEE
T ss_pred             ---cC--C-HHHHHhcCCEEEEeCCcHhH-HHHHHHHHHCCCcEEE
Confidence               11  1 23455578888888765432 3333445566666553

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=91.54  E-value=0.33  Score=44.91  Aligned_cols=34  Identities=32%  Similarity=0.524  Sum_probs=28.5

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +.+++|+|.| .|+||.++++.|+..|. ++.++|.
T Consensus        32 l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r   66 (279)
T 3ctm_A           32 LKGKVASVTGSSGGIGWAVAEAYAQAGA-DVAIWYN   66 (279)
T ss_dssp             CTTCEEEETTTTSSHHHHHHHHHHHHTC-EEEEEES
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            5677888887 68999999999999996 4777764

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=91.53  E-value=1.1  Score=45.63  Aligned_cols=93  Identities=14%  Similarity=0.183  Sum_probs=56.4

Q ss_pred             hCCcEEEECCcHH--HHHHHHHHHHh-C--CCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHH----HHHHhhCCC
Q 015243           11 KGAKVLMVGAGGI--GCELLKTLALS-G--FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVAR----DAVLKFRPQ   81 (410)
Q Consensus        11 ~~~~VlvvG~Ggi--G~ev~knLa~~-G--v~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~----~~l~~~np~   81 (410)
                      +..||.|||+|++  |+.++..|+.. +  ..+++|+|-|.                   .|++.+.    ..+......
T Consensus         2 ~~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~-------------------e~l~~~~~~~~~~l~~~~~~   62 (480)
T 1obb_A            2 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDE-------------------ERLDAILTIAKKYVEEVGAD   62 (480)
T ss_dssp             CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCH-------------------HHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCH-------------------HHHHHHHHHHHHHhccCCCC
Confidence            3578999999996  67778888753 3  46799998443                   2222222    222233344


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccCCh--HHHHHHHHHHHHCCC
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNL--DARRHVNRLCLAADV  129 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~--~~r~~i~~~c~~~~~  129 (410)
                      .+|.+..+      + .+-++++|+||.+....  +.|....++..+++.
T Consensus        63 ~~I~~ttD------~-~eal~dAD~VIiaagv~~~~~~~~dE~ip~K~g~  105 (480)
T 1obb_A           63 LKFEKTMN------L-DDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGY  105 (480)
T ss_dssp             CEEEEESC------H-HHHHTTCSEEEECCCTTHHHHHHHHHHHHHHTTC
T ss_pred             cEEEEECC------H-HHHhCCCCEEEECCCccccccccccccccccccc
Confidence            56665411      1 23468999999998653  344445556666654

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=91.51  E-value=0.35  Score=43.93  Aligned_cols=35  Identities=26%  Similarity=0.457  Sum_probs=29.6

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .+.+++|+|.| .||||.++++.|+..|. ++.++|.
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r   46 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGS   46 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcC
Confidence            46788899998 68999999999999996 4777774

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=91.51  E-value=0.3  Score=44.81  Aligned_cols=33  Identities=15%  Similarity=0.309  Sum_probs=26.2

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      +..++++|.| .||||.++++.|+..|.. +.+++
T Consensus         5 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~-v~~~~   38 (264)
T 3i4f_A            5 RFVRHALITAGTKGLGKQVTEKLLAKGYS-VTVTY   38 (264)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             cccCEEEEeCCCchhHHHHHHHHHHCCCE-EEEEc
Confidence            3457788887 589999999999999974 66665

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=91.46  E-value=0.7  Score=42.09  Aligned_cols=31  Identities=23%  Similarity=0.427  Sum_probs=25.6

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ++|+|.| .|++|..+++.|+. | .++.++|.+
T Consensus         1 m~ilVtGatG~iG~~l~~~L~~-g-~~V~~~~r~   32 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLSE-R-HEVIKVYNS   32 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHTT-T-SCEEEEESS
T ss_pred             CEEEEECCCChhHHHHHHHHhc-C-CeEEEecCC
Confidence            3799998 59999999999994 7 568887754

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=91.45  E-value=0.36  Score=44.57  Aligned_cols=37  Identities=16%  Similarity=0.350  Sum_probs=30.9

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      .|.+++|+|.| .||||.++++.|+..|. ++.++|.+.
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~   42 (264)
T 2dtx_A            5 DLRDKVVIVTGASMGIGRAIAERFVDEGS-KVIDLSIHD   42 (264)
T ss_dssp             GGTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEecCc
Confidence            46788899998 68999999999999997 577877543

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=91.44  E-value=0.18  Score=47.78  Aligned_cols=32  Identities=22%  Similarity=0.489  Sum_probs=28.5

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ++|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~-~V~~~d~~   47 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQT   47 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            579999999999999999999996 58888854

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=91.40  E-value=0.46  Score=48.28  Aligned_cols=93  Identities=15%  Similarity=0.218  Sum_probs=59.9

Q ss_pred             CCcEEEECCcHH-HHHHHHHHHHh--CC--CcEEEEeCCccCcccCccccCCCCCCCCchHHHHH----HHHHHhhCCCC
Q 015243           12 GAKVLMVGAGGI-GCELLKTLALS--GF--QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVA----RDAVLKFRPQM   82 (410)
Q Consensus        12 ~~~VlvvG~Ggi-G~ev~knLa~~--Gv--~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a----~~~l~~~np~v   82 (410)
                      +.||.|||+|++ |..++..|+..  +.  .++.|+|-|.                   .|++..    ...+.......
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~-------------------e~~~~~~~~~~~~l~~~~~~~   88 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDK-------------------ERQDRIAGACDVFIREKAPDI   88 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCH-------------------HHHHHHHHHHHHHHHHHCTTS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCH-------------------HHHHHHHHHHHHHhccCCCCC
Confidence            459999999998 77788888887  66  4699988433                   222222    22223445566


Q ss_pred             eEEEEccCCCCCcchHhhhccCcEEEEccCC--hHHHHHHHHHHHHCCCc
Q 015243           83 SITAHHANVKDPKFNVEFFKQFNVVLNGLDN--LDARRHVNRLCLAADVP  130 (410)
Q Consensus        83 ~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn--~~~r~~i~~~c~~~~~p  130 (410)
                      +|.+..+       -.+-++++|+||.+...  .+.|..-..+..++++.
T Consensus        89 ~I~~t~D-------~~eal~~AD~VViaag~~~~~g~~rd~~ip~k~g~~  131 (472)
T 1u8x_X           89 EFAATTD-------PEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVV  131 (472)
T ss_dssp             EEEEESC-------HHHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCC
T ss_pred             EEEEECC-------HHHHHcCCCEEEEcCCCccccccchhhhhhhhcCcc
Confidence            7766421       12446899999998765  34455556667777764

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=91.40  E-value=0.21  Score=44.92  Aligned_cols=32  Identities=28%  Similarity=0.401  Sum_probs=27.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ..+|.|+|+|.+|..+++.|+..|. +++++|.
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~-~V~~~~r   59 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGF-KVVVGSR   59 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTC-CEEEEES
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            4689999999999999999999996 5778774

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=91.38  E-value=0.17  Score=49.84  Aligned_cols=35  Identities=23%  Similarity=0.470  Sum_probs=31.8

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .+..++|+|+|+|++|..+++.+...|. +++++|.
T Consensus       165 ~l~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~  199 (377)
T 2vhw_A          165 GVEPADVVVIGAGTAGYNAARIANGMGA-TVTVLDI  199 (377)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeC
Confidence            3678999999999999999999999998 7999884

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=91.38  E-value=1.1  Score=45.54  Aligned_cols=82  Identities=18%  Similarity=0.268  Sum_probs=52.9

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      +++|+|.| .||||.++++.|+..|..++.+++...-.                ..+.+.+.+.+....  .++..+..+
T Consensus       226 ~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~----------------~~~~~~l~~~l~~~g--~~v~~~~~D  287 (486)
T 2fr1_A          226 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPD----------------ADGAGELVAELEALG--ARTTVAACD  287 (486)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGG----------------STTHHHHHHHHHHTT--CEEEEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCC----------------cHHHHHHHHHHHhcC--CEEEEEEeC
Confidence            56788886 89999999999999999889998744211                112333444454443  466667677


Q ss_pred             CCCCcchHhhhcc------CcEEEEcc
Q 015243           91 VKDPKFNVEFFKQ------FNVVLNGL  111 (410)
Q Consensus        91 i~~~~~~~~~~~~------~DvVi~a~  111 (410)
                      +++...-...++.      .|+||.+.
T Consensus       288 v~d~~~v~~~~~~i~~~g~ld~VIh~A  314 (486)
T 2fr1_A          288 VTDRESVRELLGGIGDDVPLSAVFHAA  314 (486)
T ss_dssp             TTCHHHHHHHHHTSCTTSCEEEEEECC
T ss_pred             CCCHHHHHHHHHHHHhcCCCcEEEECC
Confidence            7544322334443      48888863

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=91.35  E-value=0.2  Score=50.56  Aligned_cols=94  Identities=14%  Similarity=0.174  Sum_probs=58.5

Q ss_pred             hCCcEEEECCcHH--HHHHHHHHHHhC--CCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEE
Q 015243           11 KGAKVLMVGAGGI--GCELLKTLALSG--FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (410)
Q Consensus        11 ~~~~VlvvG~Ggi--G~ev~knLa~~G--v~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~   86 (410)
                      ++.||.|+|+|++  |..++..|+..-  .++++|+|.|.=.   +.+             ....++.+.+  ...+|+.
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~geV~L~Di~~e~---le~-------------~~~~~~~l~~--~~~~I~~   65 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSGTVALYDLDFEA---AQK-------------NEVIGNHSGN--GRWRYEA   65 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCEEEEEECSSHHH---HHH-------------HHHHHTTSTT--SCEEEEE
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCCeEEEEeCCHHH---HHH-------------HHHHHHHHhc--cCCeEEE
Confidence            4679999999996  789999998632  2489999855311   100             0111111111  3345544


Q ss_pred             EccCCCCCcchHhhhccCcEEEEcc--CChHHHHHHHHHHHHCCC
Q 015243           87 HHANVKDPKFNVEFFKQFNVVLNGL--DNLDARRHVNRLCLAADV  129 (410)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~DvVi~a~--Dn~~~r~~i~~~c~~~~~  129 (410)
                      ..+       ..+-++++|+||.+.  ...++|..=-+..+++|+
T Consensus        66 TtD-------~~eAl~dADfVI~airvG~~~~~~~De~ip~k~G~  103 (450)
T 3fef_A           66 VST-------LKKALSAADIVIISILPGSLDDMEVDVHLPERCGI  103 (450)
T ss_dssp             ESS-------HHHHHTTCSEEEECCCSSCHHHHHHHHHGGGGGTC
T ss_pred             ECC-------HHHHhcCCCEEEeccccCCcccchhhhhhhhccCc
Confidence            321       234578999999987  667777766667777776

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=91.33  E-value=0.4  Score=43.95  Aligned_cols=33  Identities=30%  Similarity=0.521  Sum_probs=27.0

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      |.+++++|.| .||||.++++.|+..|.. +.++|
T Consensus         2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~   35 (260)
T 1x1t_A            2 LKGKVAVVTGSTSGIGLGIATALAAQGAD-IVLNG   35 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCE-EEEEe
Confidence            3567788887 689999999999999964 77765

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=91.30  E-value=0.19  Score=47.30  Aligned_cols=31  Identities=35%  Similarity=0.572  Sum_probs=27.7

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .+|.|+|+|.+|+.++..|+..|. +++++|.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r   34 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQ   34 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCC-cEEEEEC
Confidence            589999999999999999999996 6888764

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=91.26  E-value=0.57  Score=43.36  Aligned_cols=36  Identities=17%  Similarity=0.361  Sum_probs=29.2

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .+++++++|.| .||||.++++.|+..|.. +.++|.+
T Consensus        13 ~~~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~   49 (266)
T 3p19_A           13 GSMKKLVVITGASSGIGEAIARRFSEEGHP-LLLLARR   49 (266)
T ss_dssp             --CCCEEEEESTTSHHHHHHHHHHHHTTCC-EEEEESC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECC
Confidence            46778899998 589999999999999975 7787754

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=91.22  E-value=0.35  Score=47.72  Aligned_cols=33  Identities=24%  Similarity=0.480  Sum_probs=29.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ..+|+|+|+|++|..++..+...|.+++..+|.
T Consensus       214 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  246 (404)
T 3ip1_A          214 GDNVVILGGGPIGLAAVAILKHAGASKVILSEP  246 (404)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            468999999999999999998999988888873

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=91.19  E-value=0.33  Score=44.31  Aligned_cols=34  Identities=21%  Similarity=0.466  Sum_probs=28.7

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +.+++|+|.| .|+||.++++.|+..|. ++.++|.
T Consensus        12 ~~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r   46 (265)
T 1h5q_A           12 FVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYR   46 (265)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEES
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence            5567899997 68999999999999996 5777774

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=91.17  E-value=0.33  Score=44.37  Aligned_cols=35  Identities=31%  Similarity=0.575  Sum_probs=29.0

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +|.+++++|.| .||||.++++.|+..|.. +.++|.
T Consensus         3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r   38 (253)
T 1hxh_A            3 RLQGKVALVTGGASGVGLEVVKLLLGEGAK-VAFSDI   38 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            46778888887 589999999999999964 777663

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=91.09  E-value=0.24  Score=50.47  Aligned_cols=123  Identities=18%  Similarity=0.244  Sum_probs=64.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhh-CCCCeEEEEccC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKF-RPQMSITAHHAN   90 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~-np~v~i~~~~~~   90 (410)
                      .++|.|||+|.+|..++++|+..|. ++++.|.+.-....+...-.   ...+-.-+....+.+..+ .+++-+...+..
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~---~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~   79 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANEA---KGTKVVGAQSLKEMVSKLKKPRRIILLVKAG   79 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTTT---TTSSCEECSSHHHHHHTBCSSCEEEECSCSS
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhccc---CCCceeccCCHHHHHhhccCCCEEEEecCCh
Confidence            4689999999999999999999997 58888865422222211100   000000001122333322 244333333221


Q ss_pred             -CCCCcc--hHhhhccCcEEEEccCC-hHHHHHHHHHHHHCCCcEEEecccC
Q 015243           91 -VKDPKF--NVEFFKQFNVVLNGLDN-LDARRHVNRLCLAADVPLVESGTTG  138 (410)
Q Consensus        91 -i~~~~~--~~~~~~~~DvVi~a~Dn-~~~r~~i~~~c~~~~~p~i~~g~~G  138 (410)
                       ..+...  ....++.-++||++.-. +..-..+.+.+...++.++++++.|
T Consensus        80 ~~v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsG  131 (484)
T 4gwg_A           80 QAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSG  131 (484)
T ss_dssp             HHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccC
Confidence             000000  01234556788886543 3333344456667788888887665

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=91.08  E-value=0.46  Score=43.37  Aligned_cols=34  Identities=26%  Similarity=0.402  Sum_probs=28.2

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +++++++|.| .||||.++++.|+..|.. +.++|.
T Consensus         7 l~gk~~lVTGas~gIG~a~a~~l~~~G~~-V~~~~r   41 (248)
T 3op4_A            7 LEGKVALVTGASRGIGKAIAELLAERGAK-VIGTAT   41 (248)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            5677888887 689999999999999975 777663

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=91.06  E-value=0.18  Score=51.40  Aligned_cols=35  Identities=23%  Similarity=0.447  Sum_probs=31.5

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      |.+++|+|+|+|++|..+++.|+..|. ++.++|.+
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~  297 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEID  297 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            678999999999999999999999998 68888754

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=91.02  E-value=0.2  Score=47.74  Aligned_cols=30  Identities=20%  Similarity=0.358  Sum_probs=26.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      ..||+|+|+|++|+.++..|+ .|. .+++++
T Consensus         2 ~mkI~IiGaGa~G~~~a~~L~-~g~-~V~~~~   31 (307)
T 3ego_A            2 SLKIGIIGGGSVGLLCAYYLS-LYH-DVTVVT   31 (307)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTS-EEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHh-cCC-ceEEEE
Confidence            478999999999999999999 874 677776

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=90.99  E-value=0.63  Score=42.64  Aligned_cols=34  Identities=15%  Similarity=0.391  Sum_probs=28.0

Q ss_pred             HhCCcEEEECCc---HHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVGAG---GIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG~G---giG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +++++++|.|++   |||.++++.|+..|.. +.++|.
T Consensus         5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~-V~~~~r   41 (266)
T 3oig_A            5 LEGRNIVVMGVANKRSIAWGIARSLHEAGAR-LIFTYA   41 (266)
T ss_dssp             CTTCEEEEECCCSTTSHHHHHHHHHHHTTCE-EEEEES
T ss_pred             cCCCEEEEEcCCCCCcHHHHHHHHHHHCCCE-EEEecC
Confidence            567889999964   3999999999999975 777663

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=90.98  E-value=0.19  Score=50.66  Aligned_cols=40  Identities=20%  Similarity=0.412  Sum_probs=36.3

Q ss_pred             HHHhCCcEEEECCcHHHHHHHHHHHHhCC--CcEEEEeCCcc
Q 015243            8 EAIKGAKVLMVGAGGIGCELLKTLALSGF--QDIHIIDMDTI   47 (410)
Q Consensus         8 ~~L~~~~VlvvG~GgiG~ev~knLa~~Gv--~~i~liD~D~V   47 (410)
                      ++|.+.||++.|+|+.|..+++.|...|+  ++|.++|..-+
T Consensus       215 k~l~d~riV~~GAGaAGigia~ll~~~G~~~~~i~l~D~~Gl  256 (487)
T 3nv9_A          215 KDIHECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSKGS  256 (487)
T ss_dssp             CCGGGCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEETTEE
T ss_pred             CChhhcEEEEECCCHHHHHHHHHHHHcCCCcccEEEEecccc
Confidence            36889999999999999999999999999  89999997653

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=90.93  E-value=0.2  Score=48.96  Aligned_cols=34  Identities=32%  Similarity=0.544  Sum_probs=31.1

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +..++|+|+|+|++|..+++.+...|. +++++|.
T Consensus       165 l~~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr  198 (361)
T 1pjc_A          165 VKPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDI  198 (361)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeC
Confidence            567899999999999999999999999 8999874

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=90.85  E-value=0.37  Score=44.14  Aligned_cols=35  Identities=23%  Similarity=0.502  Sum_probs=29.3

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +++++++|.| .||||.++++.|+..|.. +.++|.+
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~r~   40 (257)
T 3tpc_A            5 LKSRVFIVTGASSGLGAAVTRMLAQEGAT-VLGLDLK   40 (257)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            5678889998 589999999999999975 7777744

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=90.81  E-value=0.67  Score=44.36  Aligned_cols=85  Identities=13%  Similarity=0.150  Sum_probs=54.4

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      +.+++|+|.| .||||.++++.|+..|.. +.+.+.+..              +....+.+.+++.+....+  ++..+.
T Consensus         3 m~~k~vlVTGas~GIG~aia~~L~~~G~~-V~~~~r~~~--------------~r~~~~~~~l~~~~~~~~~--~~~~~~   65 (324)
T 3u9l_A            3 MSKKIILITGASSGFGRLTAEALAGAGHR-VYASMRDIV--------------GRNASNVEAIAGFARDNDV--DLRTLE   65 (324)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESCTT--------------TTTHHHHHHHHHHHHHHTC--CEEEEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEecCccc--------------ccCHHHHHHHHHHHHhcCC--cEEEEE
Confidence            4567788888 589999999999999975 655553321              1223455666666666543  566666


Q ss_pred             cCCCCCcchHhhh-------ccCcEEEEcc
Q 015243           89 ANVKDPKFNVEFF-------KQFNVVLNGL  111 (410)
Q Consensus        89 ~~i~~~~~~~~~~-------~~~DvVi~a~  111 (410)
                      .++++...-...+       .+.|+||++.
T Consensus        66 ~Dvtd~~~v~~~~~~~~~~~g~iD~lVnnA   95 (324)
T 3u9l_A           66 LDVQSQVSVDRAIDQIIGEDGRIDVLIHNA   95 (324)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred             eecCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            7776543333333       3789999864

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=90.80  E-value=0.39  Score=43.09  Aligned_cols=34  Identities=26%  Similarity=0.496  Sum_probs=27.6

Q ss_pred             hCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ++++|+|.| .|+||.++++.|+..|. ++.++|.+
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~   38 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLHAKGY-RVGLMARD   38 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            356788887 78999999999999996 47777643

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=90.80  E-value=1.1  Score=42.95  Aligned_cols=75  Identities=20%  Similarity=0.255  Sum_probs=48.9

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHh-CC-CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           13 AKVLMVG-AGGIGCELLKTLALS-GF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~-Gv-~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      .||.|+| +|.+|..++..|+.. ++ .+|.|+|.+.                    |++-.+.-+......+++..+..
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~--------------------~~~G~a~Dl~~~~~~~~v~~~~~   60 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP--------------------VTPGVAVDLSHIPTAVKIKGFSG   60 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST--------------------THHHHHHHHHTSCSSEEEEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC--------------------CchhHHHHhhCCCCCceEEEecC
Confidence            4799999 899999999999876 55 5799988432                    11112233444433456665522


Q ss_pred             CCCCCcchHhhhccCcEEEEccC
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                         ..  +.+-++++|+||.+..
T Consensus        61 ---~~--~~~~~~~aDivii~ag   78 (312)
T 3hhp_A           61 ---ED--ATPALEGADVVLISAG   78 (312)
T ss_dssp             ---SC--CHHHHTTCSEEEECCS
T ss_pred             ---CC--cHHHhCCCCEEEEeCC
Confidence               11  2456799999998754

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=90.80  E-value=0.22  Score=47.67  Aligned_cols=93  Identities=17%  Similarity=0.198  Sum_probs=57.0

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCC---CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEE
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv---~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~   86 (410)
                      +...+|.|||+|.+|+.++.+|+..|+   ..++++|.+.-                 ..+++.+.    +.  .+.+..
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~-----------------~~~~~~l~----~~--G~~~~~   76 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMD-----------------LATVSALR----KM--GVKLTP   76 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTT-----------------SHHHHHHH----HH--TCEEES
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCcc-----------------HHHHHHHH----Hc--CCEEeC
Confidence            345689999999999999999999995   56888763210                 01333332    22  233211


Q ss_pred             EccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHH--CCCcEEEe
Q 015243           87 HHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA--ADVPLVES  134 (410)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~--~~~p~i~~  134 (410)
                               ...+...++|+||.|+-....+..+.++...  .+..+++.
T Consensus        77 ---------~~~e~~~~aDvVilav~~~~~~~vl~~l~~~l~~~~ivvs~  117 (322)
T 2izz_A           77 ---------HNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSC  117 (322)
T ss_dssp             ---------CHHHHHHHCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEEC
T ss_pred             ---------ChHHHhccCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEe
Confidence                     1235567899999999755555555554322  24456664

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=90.76  E-value=0.21  Score=48.92  Aligned_cols=34  Identities=26%  Similarity=0.480  Sum_probs=31.1

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +..++|+|+|+|++|..+++.+...|. +++++|.
T Consensus       164 l~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~  197 (369)
T 2eez_A          164 VAPASVVILGGGTVGTNAAKIALGMGA-QVTILDV  197 (369)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEEC
Confidence            678999999999999999999999998 7988873

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=90.71  E-value=0.23  Score=47.76  Aligned_cols=33  Identities=27%  Similarity=0.389  Sum_probs=28.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ..+|+|+|+|.+|+.++..|+..|. +++++|.+
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~-~V~~~~r~   36 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDID   36 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            4689999999999999999999995 58887743

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=90.67  E-value=0.74  Score=43.23  Aligned_cols=35  Identities=17%  Similarity=0.323  Sum_probs=29.1

Q ss_pred             HHhCCcEEEECCc-H--HHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVGAG-G--IGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG~G-g--iG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .|.+++++|.|++ +  ||.++++.|+..|.. +.++|.
T Consensus        28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~~-V~~~~r   65 (293)
T 3grk_A           28 LLQGKRGLILGVANNRSIAWGIAKAAREAGAE-LAFTYQ   65 (293)
T ss_dssp             TTTTCEEEEECCCSSSSHHHHHHHHHHHTTCE-EEEEEC
T ss_pred             cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCE-EEEEcC
Confidence            4778899999973 4  999999999999965 777764

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=90.64  E-value=0.7  Score=44.52  Aligned_cols=32  Identities=28%  Similarity=0.393  Sum_probs=27.3

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ++|+|.| .|+||..+++.|+..|. +++++|.+
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   57 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGY-EVHGIVRR   57 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC-EEEEEECC
Confidence            6799998 59999999999999995 67777754

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=90.64  E-value=0.66  Score=43.10  Aligned_cols=34  Identities=26%  Similarity=0.453  Sum_probs=27.7

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +.+++++|.| .||||.++++.|+..|.. +.++|.
T Consensus        27 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r   61 (283)
T 1g0o_A           27 LEGKVALVTGAGRGIGREMAMELGRRGCK-VIVNYA   61 (283)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            5667788887 789999999999999964 777663

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=90.63  E-value=0.27  Score=45.76  Aligned_cols=39  Identities=18%  Similarity=0.376  Sum_probs=30.7

Q ss_pred             HHHHHhCCcEEEECC---cHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            6 QLEAIKGAKVLMVGA---GGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         6 ~q~~L~~~~VlvvG~---GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .+..+.+++|+|.|+   +|||.++++.|+..|. ++.++|.+
T Consensus        20 ~M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~   61 (280)
T 3nrc_A           20 HMGFLAGKKILITGLLSNKSIAYGIAKAMHREGA-ELAFTYVG   61 (280)
T ss_dssp             --CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTC-EEEEEECT
T ss_pred             cccccCCCEEEEECCCCCCCHHHHHHHHHHHcCC-EEEEeeCc
Confidence            345677889999995   3599999999999997 48888754

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=90.61  E-value=0.56  Score=42.55  Aligned_cols=63  Identities=25%  Similarity=0.260  Sum_probs=40.9

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      |++++++|.| .||||.++++.|+..|.. +.+++..                  ...+.+.+.+.+.+..  .++..+.
T Consensus         5 l~~k~vlITGas~gIG~~~a~~l~~~G~~-v~~~~~~------------------~~~~~~~~~~~~~~~~--~~~~~~~   63 (255)
T 3icc_A            5 LKGKVALVTGASRGIGRAIAKRLANDGAL-VAIHYGN------------------RKEEAEETVYEIQSNG--GSAFSIG   63 (255)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESS------------------CSHHHHHHHHHHHHTT--CEEEEEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCC------------------chHHHHHHHHHHHhcC--CceEEEe
Confidence            5677888887 589999999999999974 5554321                  1234455555555543  3555666


Q ss_pred             cCCCC
Q 015243           89 ANVKD   93 (410)
Q Consensus        89 ~~i~~   93 (410)
                      .++++
T Consensus        64 ~D~~~   68 (255)
T 3icc_A           64 ANLES   68 (255)
T ss_dssp             CCTTS
T ss_pred             cCcCC
Confidence            66643

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=90.59  E-value=0.25  Score=45.41  Aligned_cols=31  Identities=23%  Similarity=0.342  Sum_probs=27.0

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      .+|.|||+|.+|+.++..|+..|...++++|
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~   31 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIAN   31 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEEC
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEEC
Confidence            3799999999999999999999954677776

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=90.56  E-value=0.25  Score=45.96  Aligned_cols=88  Identities=15%  Similarity=0.107  Sum_probs=53.7

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~   92 (410)
                      ++|.|||+|.+|+.+++.|...|. +++++|.+.                   .+.+.+    .+..  +..... ..  
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~-------------------~~~~~~----~~~g--~~~~~~-~~--   51 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQ-------------------STCEKA----VERQ--LVDEAG-QD--   51 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH-------------------HHHHHH----HHTT--SCSEEE-SC--
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHH----HhCC--CCcccc-CC--
Confidence            379999999999999999999997 677776331                   122222    1211  110111 11  


Q ss_pred             CCcchHhhhccCcEEEEccCChHHHHHHHHHHHH--CCCcEEEe
Q 015243           93 DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA--ADVPLVES  134 (410)
Q Consensus        93 ~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~--~~~p~i~~  134 (410)
                          ..+. .++|+||.|+.....+..+.++...  .+..+++.
T Consensus        52 ----~~~~-~~~D~vi~av~~~~~~~~~~~l~~~~~~~~~vv~~   90 (279)
T 2f1k_A           52 ----LSLL-QTAKIIFLCTPIQLILPTLEKLIPHLSPTAIVTDV   90 (279)
T ss_dssp             ----GGGG-TTCSEEEECSCHHHHHHHHHHHGGGSCTTCEEEEC
T ss_pred             ----HHHh-CCCCEEEEECCHHHHHHHHHHHHhhCCCCCEEEEC
Confidence                1244 7899999999765555555554332  24556665

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=90.53  E-value=0.3  Score=44.12  Aligned_cols=34  Identities=32%  Similarity=0.419  Sum_probs=30.4

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +...|+|||+|..|+++|..|++.|.. ++|+|..
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~g~~-v~lie~~   35 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQKGVR-VGLLTQS   35 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCC-EEEEESC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCC-EEEEecC
Confidence            356899999999999999999999974 8898875

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=90.53  E-value=0.29  Score=46.93  Aligned_cols=34  Identities=26%  Similarity=0.514  Sum_probs=30.4

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ...+|+|.|+|++|...+..+..+|...++.+|.
T Consensus       160 ~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~  193 (346)
T 4a2c_A          160 ENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDI  193 (346)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred             CCCEEEEECCCCcchHHHHHHHHcCCcEEEEEec
Confidence            4678999999999999999999999999888873

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=90.53  E-value=0.65  Score=42.96  Aligned_cols=36  Identities=31%  Similarity=0.536  Sum_probs=29.8

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ++.+++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus         6 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   42 (270)
T 1yde_A            6 RYAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKD   42 (270)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            36778899997 68999999999999996 47777643

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=90.53  E-value=0.79  Score=41.45  Aligned_cols=34  Identities=35%  Similarity=0.601  Sum_probs=28.7

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +.+++|+|.| .|+||.++++.|+..|. ++.++|.
T Consensus         9 ~~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r   43 (254)
T 2wsb_A            9 LDGACAAVTGAGSGIGLEICRAFAASGA-RLILIDR   43 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            5678899997 68999999999999996 4777764

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=90.52  E-value=0.35  Score=44.67  Aligned_cols=35  Identities=31%  Similarity=0.544  Sum_probs=29.3

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +|.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         3 ~l~~k~vlITGas~gIG~aia~~l~~~G~-~V~~~~r   38 (263)
T 2a4k_A            3 RLSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDR   38 (263)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            36778899998 68999999999999996 5777764

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=90.37  E-value=0.59  Score=42.91  Aligned_cols=34  Identities=21%  Similarity=0.423  Sum_probs=28.8

Q ss_pred             HhCCcEEEECC---cHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVGA---GGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG~---GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      |.+++++|.|+   ||||.++++.|+..|.. +.++|.
T Consensus         6 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~-V~~~~r   42 (261)
T 2wyu_A            6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAE-VALSYQ   42 (261)
T ss_dssp             CTTCEEEEESCCSSSSHHHHHHHHHHHHTCE-EEEEES
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHCCCE-EEEEcC
Confidence            56788999997   69999999999999964 777764

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=90.33  E-value=0.42  Score=43.79  Aligned_cols=36  Identities=17%  Similarity=0.341  Sum_probs=30.7

Q ss_pred             HHHhCCcEEEECC---cHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            8 EAIKGAKVLMVGA---GGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         8 ~~L~~~~VlvvG~---GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ..+.+++|+|.|+   ||||.++++.|+..|. ++.++|.
T Consensus        10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r   48 (271)
T 3ek2_A           10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYV   48 (271)
T ss_dssp             CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEec
Confidence            4577899999995   6999999999999997 5778774

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=90.31  E-value=1.4  Score=44.97  Aligned_cols=33  Identities=21%  Similarity=0.303  Sum_probs=27.9

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .++|+|.| .|.||+.+++.|...|. +++.++.+
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~-~V~~l~R~  180 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGH-EVIQLVRK  180 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            46899999 69999999999999996 57777644

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=90.31  E-value=0.91  Score=41.98  Aligned_cols=80  Identities=21%  Similarity=0.299  Sum_probs=47.1

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      +.+++++|.| .||||.++++.|+..|.. +.+++..                  ...+.+.+++.+.....  ++..+.
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~~-Vv~~~~~------------------~~~~~~~~~~~~~~~~~--~~~~~~   83 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGFT-VVINYAG------------------KAAAAEEVAGKIEAAGG--KALTAQ   83 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTCE-EEEEESS------------------CSHHHHHHHHHHHHTTC--CEEEEE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEcCC------------------CHHHHHHHHHHHHhcCC--eEEEEE
Confidence            4567788887 689999999999999975 5554311                  12344555555555433  455555


Q ss_pred             cCCCCCcchHhh-------hccCcEEEEc
Q 015243           89 ANVKDPKFNVEF-------FKQFNVVLNG  110 (410)
Q Consensus        89 ~~i~~~~~~~~~-------~~~~DvVi~a  110 (410)
                      .++++...-..+       +.+.|++|++
T Consensus        84 ~Dl~~~~~v~~~~~~~~~~~g~iD~lvnn  112 (267)
T 3u5t_A           84 ADVSDPAAVRRLFATAEEAFGGVDVLVNN  112 (267)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            566443222222       2356777764

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=90.28  E-value=0.25  Score=48.24  Aligned_cols=92  Identities=16%  Similarity=0.264  Sum_probs=57.1

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhC-----CCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC----
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSG-----FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ----   81 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~G-----v~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~----   81 (410)
                      ..||+|+| .|.+|.++++.|...+     .-+++.+-.               ..+.|+.        +....|.    
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s---------------~~~agk~--------~~~~~~~l~~~   65 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTA---------------ATSAGST--------LGEHHPHLTPL   65 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEE---------------SSCTTSB--------GGGTCTTCGGG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEEC---------------CCcCCCc--------hhhhccccccc
Confidence            35899999 8999999999999766     334444321               1122221        1111221    


Q ss_pred             --CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEeccc
Q 015243           82 --MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT  137 (410)
Q Consensus        82 --v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~  137 (410)
                        +.+..         .+.+-+.++|+|+.|+....++.++..+  +.++.+|+.+..
T Consensus        66 ~~~~~~~---------~~~~~~~~~DvVf~alg~~~s~~~~~~~--~~G~~vIDlSa~  112 (352)
T 2nqt_A           66 AHRVVEP---------TEAAVLGGHDAVFLALPHGHSAVLAQQL--SPETLIIDCGAD  112 (352)
T ss_dssp             TTCBCEE---------CCHHHHTTCSEEEECCTTSCCHHHHHHS--CTTSEEEECSST
T ss_pred             ceeeecc---------CCHHHhcCCCEEEECCCCcchHHHHHHH--hCCCEEEEECCC
Confidence              12111         1123356899999999877777776666  778889986644

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=90.27  E-value=0.47  Score=43.65  Aligned_cols=35  Identities=14%  Similarity=0.353  Sum_probs=29.3

Q ss_pred             HhCCcEEEECC---cHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVGA---GGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG~---GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      |.+++++|.|+   ||||.++++.|+..|.. +.++|.+
T Consensus         7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~-V~~~~r~   44 (265)
T 1qsg_A            7 LSGKRILVTGVASKLSIAYGIAQAMHREGAE-LAFTYQN   44 (265)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCCE-EEEEcCc
Confidence            56788999997   69999999999999964 7777744

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=90.24  E-value=1.7  Score=41.86  Aligned_cols=100  Identities=12%  Similarity=0.178  Sum_probs=60.7

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      .++|+|.| .|.+|..+++.|+..|. ++++++.+.-                 +.+    ++.+.. .+  .++....+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~-----------------~~~----~~~l~~-~~--~v~~v~~D   59 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGH-HVRAQVHSLK-----------------GLI----AEELQA-IP--NVTLFQGP   59 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCSC-----------------SHH----HHHHHT-ST--TEEEEESC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCCC-----------------hhh----HHHHhh-cC--CcEEEECC
Confidence            67899999 59999999999999885 4776653210                 111    122222 12  34455666


Q ss_pred             -CCCCcchHhhhccCcEEEEccCC------hHHHHHHHHHHHHCC-C-cEEEeccc
Q 015243           91 -VKDPKFNVEFFKQFNVVLNGLDN------LDARRHVNRLCLAAD-V-PLVESGTT  137 (410)
Q Consensus        91 -i~~~~~~~~~~~~~DvVi~a~Dn------~~~r~~i~~~c~~~~-~-p~i~~g~~  137 (410)
                       +++...-...++++|+||.+...      ... ..+-+.|.+.+ + .+|..++.
T Consensus        60 ~l~d~~~l~~~~~~~d~Vi~~a~~~~~~~~~~~-~~l~~aa~~~g~v~~~V~~SS~  114 (352)
T 1xgk_A           60 LLNNVPLMDTLFEGAHLAFINTTSQAGDEIAIG-KDLADAAKRAGTIQHYIYSSMP  114 (352)
T ss_dssp             CTTCHHHHHHHHTTCSEEEECCCSTTSCHHHHH-HHHHHHHHHHSCCSEEEEEECC
T ss_pred             ccCCHHHHHHHHhcCCEEEEcCCCCCcHHHHHH-HHHHHHHHHcCCccEEEEeCCc
Confidence             65443334567889999965432      233 45556677666 4 56666544

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=90.23  E-value=0.72  Score=41.31  Aligned_cols=32  Identities=22%  Similarity=0.412  Sum_probs=26.4

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ++|+|.| .||||.++++.|+..|.. +.++|.+
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~-V~~~~r~   34 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGKA-TYLTGRS   34 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTCC-EEEEESC
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence            4688887 679999999999999975 8887754

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=90.23  E-value=0.72  Score=43.32  Aligned_cols=35  Identities=14%  Similarity=0.404  Sum_probs=29.9

Q ss_pred             HHhCCcEEEECCc---HHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVGAG---GIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG~G---giG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .|.+++++|.|++   |||.++++.|+..|.. +.++|.
T Consensus        27 ~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~-V~~~~r   64 (296)
T 3k31_A           27 LMEGKKGVIIGVANDKSLAWGIAKAVCAQGAE-VALTYL   64 (296)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHHTTCE-EEEEES
T ss_pred             ccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCE-EEEEeC
Confidence            3678899999985   9999999999999975 778774

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=90.23  E-value=0.6  Score=43.40  Aligned_cols=62  Identities=21%  Similarity=0.325  Sum_probs=41.5

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      |+++.++|-| .+|||.++++.|+..|.. +.+.|.                   ...+.+.+++.+++..  .++..+.
T Consensus         7 L~gKvalVTGas~GIG~aia~~la~~Ga~-Vvi~~~-------------------~~~~~~~~~~~l~~~g--~~~~~~~   64 (255)
T 4g81_D            7 LTGKTALVTGSARGLGFAYAEGLAAAGAR-VILNDI-------------------RATLLAESVDTLTRKG--YDAHGVA   64 (255)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEECCS-------------------CHHHHHHHHHHHHHTT--CCEEECC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEEC-------------------CHHHHHHHHHHHHhcC--CcEEEEE
Confidence            5677777776 789999999999999974 777652                   2234444555565553  3555565


Q ss_pred             cCCCC
Q 015243           89 ANVKD   93 (410)
Q Consensus        89 ~~i~~   93 (410)
                      .++++
T Consensus        65 ~Dv~~   69 (255)
T 4g81_D           65 FDVTD   69 (255)
T ss_dssp             CCTTC
T ss_pred             eeCCC
Confidence            56644

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=90.22  E-value=0.68  Score=42.69  Aligned_cols=78  Identities=18%  Similarity=0.259  Sum_probs=45.6

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      +++|+|.| .||||.++++.|+..|.. +.+++..                  ...+.+.+.+.+.+..+  ++..+..+
T Consensus        26 ~k~vlITGas~gIG~a~a~~l~~~G~~-V~~~~~~------------------~~~~~~~~~~~~~~~~~--~~~~~~~D   84 (272)
T 4e3z_A           26 TPVVLVTGGSRGIGAAVCRLAARQGWR-VGVNYAA------------------NREAADAVVAAITESGG--EAVAIPGD   84 (272)
T ss_dssp             SCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESS------------------CHHHHHHHHHHHHHTTC--EEEEEECC
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCC------------------ChhHHHHHHHHHHhcCC--cEEEEEcC
Confidence            44566666 689999999999999975 4443211                  12344555555555433  56666666


Q ss_pred             CCCCcchHhhh-------ccCcEEEEc
Q 015243           91 VKDPKFNVEFF-------KQFNVVLNG  110 (410)
Q Consensus        91 i~~~~~~~~~~-------~~~DvVi~a  110 (410)
                      +++...-..++       .+.|+||++
T Consensus        85 l~~~~~v~~~~~~~~~~~g~id~li~n  111 (272)
T 4e3z_A           85 VGNAADIAAMFSAVDRQFGRLDGLVNN  111 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence            65432222222       356777664

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=90.21  E-value=0.5  Score=44.00  Aligned_cols=35  Identities=17%  Similarity=0.367  Sum_probs=29.3

Q ss_pred             HhCCcEEEECC---cHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVGA---GGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG~---GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      |.+++++|.|+   ||||.++++.|+..|. ++.++|.+
T Consensus        19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~   56 (285)
T 2p91_A           19 LEGKRALITGVANERSIAYGIAKSFHREGA-QLAFTYAT   56 (285)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCC
Confidence            66788999997   6999999999999996 47777743

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=90.11  E-value=0.3  Score=45.47  Aligned_cols=91  Identities=21%  Similarity=0.280  Sum_probs=55.8

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCC-cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~-~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      ++|.|||+|.+|..+++.|...|.. +++++|.+.                   .+.+.+    ++..  +..... .. 
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~-------------------~~~~~~----~~~g--~~~~~~-~~-   54 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP-------------------ESISKA----VDLG--IIDEGT-TS-   54 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH-------------------HHHHHH----HHTT--SCSEEE-SC-
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH-------------------HHHHHH----HHCC--Cccccc-CC-
Confidence            4799999999999999999999963 577776331                   122221    1211  110011 11 


Q ss_pred             CCCcchHhhhc-cCcEEEEccCChHHHHHHHHHHHH--CCCcEEEec
Q 015243           92 KDPKFNVEFFK-QFNVVLNGLDNLDARRHVNRLCLA--ADVPLVESG  135 (410)
Q Consensus        92 ~~~~~~~~~~~-~~DvVi~a~Dn~~~r~~i~~~c~~--~~~p~i~~g  135 (410)
                           ..+.+. ++|+|+.|+-....+..+.++...  .+..+++.+
T Consensus        55 -----~~~~~~~~aDvVilavp~~~~~~v~~~l~~~l~~~~iv~~~~   96 (281)
T 2g5c_A           55 -----IAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQG   96 (281)
T ss_dssp             -----GGGGGGTCCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred             -----HHHHhcCCCCEEEEcCCHHHHHHHHHHHHhhCCCCcEEEECC
Confidence                 124567 899999999776666666655432  345566643

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=90.09  E-value=0.8  Score=44.30  Aligned_cols=86  Identities=15%  Similarity=0.285  Sum_probs=53.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhC---------CCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSG---------FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM   82 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~G---------v~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v   82 (410)
                      ..||.|+|+|.+|..+++.|....         +.-..+.|.+.-           +..+++.                .
T Consensus         3 ~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~-----------~~~~~~~----------------~   55 (332)
T 2ejw_A            3 ALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPR-----------KPRAIPQ----------------E   55 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTT-----------SCCSSCG----------------G
T ss_pred             eeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHH-----------HhhccCc----------------c
Confidence            458999999999999999998753         333345554421           1111110                0


Q ss_pred             eEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEe
Q 015243           83 SITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVES  134 (410)
Q Consensus        83 ~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~  134 (410)
                      .   ...++.      +++ +.|+|+.|+.+.......-..|.++++.++.+
T Consensus        56 ~---~~~d~~------~ll-~iDvVve~t~~~~~a~~~~~~AL~aGKhVVta   97 (332)
T 2ejw_A           56 L---LRAEPF------DLL-EADLVVEAMGGVEAPLRLVLPALEAGIPLITA   97 (332)
T ss_dssp             G---EESSCC------CCT-TCSEEEECCCCSHHHHHHHHHHHHTTCCEEEC
T ss_pred             c---ccCCHH------HHh-CCCEEEECCCCcHHHHHHHHHHHHcCCeEEEC
Confidence            1   111221      233 88999999987754444556678899988875

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=90.09  E-value=0.71  Score=46.38  Aligned_cols=36  Identities=25%  Similarity=0.292  Sum_probs=31.4

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      +++++|+|+|.|+.|..+++.|...|.. +++.|...
T Consensus         7 ~~~k~v~viG~G~sG~s~A~~l~~~G~~-V~~~D~~~   42 (451)
T 3lk7_A            7 FENKKVLVLGLARSGEAAARLLAKLGAI-VTVNDGKP   42 (451)
T ss_dssp             TTTCEEEEECCTTTHHHHHHHHHHTTCE-EEEEESSC
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCCCE-EEEEeCCc
Confidence            5689999999999999999999999955 88888643

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=90.09  E-value=0.26  Score=46.82  Aligned_cols=36  Identities=19%  Similarity=0.314  Sum_probs=31.4

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .|.+++|.|||+|.+|..+++.|...|. ++..+|..
T Consensus       119 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~  154 (290)
T 3gvx_A          119 LLYGKALGILGYGGIGRRVAHLAKAFGM-RVIAYTRS  154 (290)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             eeecchheeeccCchhHHHHHHHHhhCc-EEEEEecc
Confidence            3778999999999999999999999997 47777743

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=90.07  E-value=1.1  Score=43.15  Aligned_cols=33  Identities=12%  Similarity=0.112  Sum_probs=25.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHh-CCCcEEEEeC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALS-GFQDIHIIDM   44 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~-Gv~~i~liD~   44 (410)
                      ..||.|||+|.+|...++.|... |+.-+.+.|.
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~   38 (354)
T 3db2_A            5 PVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSR   38 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECS
T ss_pred             cceEEEEccCHHHHHHHHHHHhCCCcEEEEEECC
Confidence            45899999999999999999876 5443445564

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=90.04  E-value=0.26  Score=48.42  Aligned_cols=34  Identities=26%  Similarity=0.466  Sum_probs=30.7

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      |.+++|+|+|+|.+|..+++.|...|.. +++.|.
T Consensus       171 L~GktV~V~G~G~VG~~~A~~L~~~Gak-Vvv~D~  204 (364)
T 1leh_A          171 LEGLAVSVQGLGNVAKALCKKLNTEGAK-LVVTDV  204 (364)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             CCcCEEEEECchHHHHHHHHHHHHCCCE-EEEEcC
Confidence            6789999999999999999999999985 778874

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=90.03  E-value=0.28  Score=47.33  Aligned_cols=36  Identities=22%  Similarity=0.451  Sum_probs=31.4

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .|.+++|.|||+|.+|..+++.|...|+ ++..+|..
T Consensus       134 ~l~gktvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~  169 (324)
T 3evt_A          134 TLTGQQLLIYGTGQIGQSLAAKASALGM-HVIGVNTT  169 (324)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             cccCCeEEEECcCHHHHHHHHHHHhCCC-EEEEECCC
Confidence            4778999999999999999999999997 47777743

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=90.01  E-value=0.33  Score=48.01  Aligned_cols=37  Identities=27%  Similarity=0.507  Sum_probs=33.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE   48 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve   48 (410)
                      ...|+|||+|..|+.+|..|++.|..+++|+|.+..-
T Consensus         6 ~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~~   42 (438)
T 3dje_A            6 SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVP   42 (438)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence            4679999999999999999999998679999987663

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=90.00  E-value=0.23  Score=48.12  Aligned_cols=35  Identities=26%  Similarity=0.397  Sum_probs=30.8

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .|.+++|.|||+|.+|..+++.|...|. ++.++|.
T Consensus       143 ~l~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~d~  177 (333)
T 2d0i_A          143 SLYGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSR  177 (333)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECS
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence            5788999999999999999999999886 5777773

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=89.99  E-value=0.81  Score=45.77  Aligned_cols=100  Identities=10%  Similarity=0.053  Sum_probs=58.4

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHh-CCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC-CCCeEEE
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR-PQMSITA   86 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~-Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~n-p~v~i~~   86 (410)
                      .++..||.|||+|.+|...+..|... |+.-..+.|                   ....|++.+++.+.+.. |...+  
T Consensus        17 ~~~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d-------------------~~~~~~~~~a~~~~~~g~~~~~~--   75 (444)
T 2ixa_A           17 NPKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFAD-------------------PDPYMVGRAQEILKKNGKKPAKV--   75 (444)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEC-------------------SCHHHHHHHHHHHHHTTCCCCEE--
T ss_pred             CCCCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEe-------------------CCHHHHHHHHHHHHhcCCCCCce--
Confidence            34567999999999999999988864 333233444                   23456666666665443 32332  


Q ss_pred             EccCCCCCcchHhhhc--cCcEEEEccCChHHHHHHHHHHHHCCCcEEE
Q 015243           87 HHANVKDPKFNVEFFK--QFNVVLNGLDNLDARRHVNRLCLAADVPLVE  133 (410)
Q Consensus        87 ~~~~i~~~~~~~~~~~--~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~  133 (410)
                      +...  +.. -++++.  +.|+|+.|+.+. ....+...|.+.+++++.
T Consensus        76 ~~~~--~~~-~~~ll~~~~vD~V~i~tp~~-~h~~~~~~al~aGkhV~~  120 (444)
T 2ixa_A           76 FGNG--NDD-YKNMLKDKNIDAVFVSSPWE-WHHEHGVAAMKAGKIVGM  120 (444)
T ss_dssp             ECSS--TTT-HHHHTTCTTCCEEEECCCGG-GHHHHHHHHHHTTCEEEE
T ss_pred             eccC--CCC-HHHHhcCCCCCEEEEcCCcH-HHHHHHHHHHHCCCeEEE
Confidence            2210  011 234454  589999998653 344455566677776553

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=89.95  E-value=0.63  Score=42.91  Aligned_cols=33  Identities=18%  Similarity=0.430  Sum_probs=26.1

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      +.++.++|.| .||||.++++.|+..|.. +.++|
T Consensus        23 ~~~k~vlITGas~gIG~~~a~~l~~~G~~-v~~~~   56 (269)
T 3gk3_A           23 QAKRVAFVTGGMGGLGAAISRRLHDAGMA-VAVSH   56 (269)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHTTTCE-EEEEE
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEc
Confidence            5566677777 689999999999999975 66665

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=89.93  E-value=0.32  Score=46.73  Aligned_cols=36  Identities=33%  Similarity=0.547  Sum_probs=31.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE   48 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve   48 (410)
                      ...|+|||+|.+|+.+|..|++.|. +++|+|.+.+.
T Consensus         6 ~~dVvVIG~Gi~Gls~A~~La~~G~-~V~vle~~~~~   41 (363)
T 1c0p_A            6 QKRVVVLGSGVIGLSSALILARKGY-SVHILARDLPE   41 (363)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC-EEEEEeccCCC
Confidence            4689999999999999999999997 69999977654

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=89.90  E-value=0.64  Score=42.84  Aligned_cols=36  Identities=19%  Similarity=0.289  Sum_probs=28.5

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .|.+++++|.| .||||.++++.|+..|.. +.++|.+
T Consensus        24 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~   60 (260)
T 3gem_A           24 TLSSAPILITGASQRVGLHCALRLLEHGHR-VIISYRT   60 (260)
T ss_dssp             ---CCCEEESSTTSHHHHHHHHHHHHTTCC-EEEEESS
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            46788899998 589999999999999975 8888754

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=89.86  E-value=0.99  Score=41.20  Aligned_cols=35  Identities=31%  Similarity=0.527  Sum_probs=29.4

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      |.+++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   39 (256)
T 2d1y_A            4 FAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLR   39 (256)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5678899998 68999999999999996 57777743

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=89.77  E-value=2.1  Score=41.34  Aligned_cols=34  Identities=24%  Similarity=0.482  Sum_probs=27.4

Q ss_pred             hCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ..++|+|.| +|.||+.+++.|+..|. +++++|..
T Consensus        10 ~~~~vlVTG~tGfIG~~l~~~L~~~G~-~V~~~~r~   44 (404)
T 1i24_A           10 HGSRVMVIGGDGYCGWATALHLSKKNY-EVCIVDNL   44 (404)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCeEEEeCCCcHHHHHHHHHHHhCCC-eEEEEEec
Confidence            467899998 68899999999999995 58887753

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=89.76  E-value=0.26  Score=47.61  Aligned_cols=35  Identities=20%  Similarity=0.322  Sum_probs=30.9

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .|.+++|.|||+|.+|..+++.|...|. +++++|.
T Consensus       152 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~  186 (330)
T 2gcg_A          152 GLTQSTVGIIGLGRIGQAIARRLKPFGV-QRFLYTG  186 (330)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHGGGTC-CEEEEES
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence            4678899999999999999999999997 4888874

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=89.74  E-value=0.28  Score=46.98  Aligned_cols=34  Identities=24%  Similarity=0.376  Sum_probs=29.7

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      .|.+++|.|||+|.+|..+++.|...|. ++..+|
T Consensus       139 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d  172 (313)
T 2ekl_A          139 ELAGKTIGIVGFGRIGTKVGIIANAMGM-KVLAYD  172 (313)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEEC
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEC
Confidence            4778999999999999999999999996 477766

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=89.72  E-value=0.28  Score=47.44  Aligned_cols=35  Identities=20%  Similarity=0.264  Sum_probs=30.5

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .|.+++|.|||+|.+|..+++.|...|. ++.++|.
T Consensus       147 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~  181 (334)
T 2dbq_A          147 DVYGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSR  181 (334)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHhCCC-EEEEECC
Confidence            4778899999999999999999999986 5777763

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=89.72  E-value=0.32  Score=47.61  Aligned_cols=39  Identities=26%  Similarity=0.262  Sum_probs=31.2

Q ss_pred             HHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243            7 LEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus         7 q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      .+..+..+|+|||+|..|+.+|..|++.|+ +++|+|.+.
T Consensus        18 ~~~~~~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~E~~~   56 (407)
T 3rp8_A           18 LYFQGHMKAIVIGAGIGGLSAAVALKQSGI-DCDVYEAVK   56 (407)
T ss_dssp             -----CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             ccCCCCCEEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            445567899999999999999999999998 499999764

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=89.71  E-value=0.82  Score=42.91  Aligned_cols=35  Identities=20%  Similarity=0.392  Sum_probs=29.9

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ||+++.++|-| .+|||-++++.|+..|.. +.++|.
T Consensus        26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~-V~i~~r   61 (273)
T 4fgs_A           26 RLNAKIAVITGATSGIGLAAAKRFVAEGAR-VFITGR   61 (273)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             hhCCCEEEEeCcCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            57888888887 679999999999999984 888774

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=89.59  E-value=0.3  Score=46.97  Aligned_cols=36  Identities=22%  Similarity=0.360  Sum_probs=31.1

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .|.+++|.|||+|.+|..+++.|...|.. +...|..
T Consensus       136 ~l~g~tvGIiG~G~IG~~vA~~l~~~G~~-V~~~dr~  171 (315)
T 3pp8_A          136 TREEFSVGIMGAGVLGAKVAESLQAWGFP-LRCWSRS  171 (315)
T ss_dssp             CSTTCCEEEECCSHHHHHHHHHHHTTTCC-EEEEESS
T ss_pred             CcCCCEEEEEeeCHHHHHHHHHHHHCCCE-EEEEcCC
Confidence            46789999999999999999999999874 7777743

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=89.48  E-value=0.33  Score=46.97  Aligned_cols=35  Identities=23%  Similarity=0.378  Sum_probs=30.3

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .|.+++|.|||+|.+|..+++.|...|. ++..+|.
T Consensus       143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~  177 (333)
T 1j4a_A          143 EVRDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDI  177 (333)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence            4778999999999999999999999886 4777663

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=89.45  E-value=0.36  Score=47.44  Aligned_cols=35  Identities=20%  Similarity=0.354  Sum_probs=31.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      ..+|+|||+|..|..+|..|++.|+.+++|+|...
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~   38 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSS   38 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            56899999999999999999999987699999654

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=89.43  E-value=0.24  Score=47.45  Aligned_cols=35  Identities=34%  Similarity=0.491  Sum_probs=31.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      ..+|+|||+|..|..+|..|++.|..+++|+|.+.
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~   38 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT   38 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence            46899999999999999999999975799999774

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=89.40  E-value=0.27  Score=48.19  Aligned_cols=36  Identities=28%  Similarity=0.476  Sum_probs=31.3

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .|.+++|.|||+|.+|..+++.|...|..++..+|.
T Consensus       161 ~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~  196 (364)
T 2j6i_A          161 DIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDY  196 (364)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECS
T ss_pred             cCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECC
Confidence            478899999999999999999999888765777763

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=89.40  E-value=1.4  Score=41.56  Aligned_cols=78  Identities=26%  Similarity=0.331  Sum_probs=46.3

Q ss_pred             hCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC--CeEEEE
Q 015243           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ--MSITAH   87 (410)
Q Consensus        11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~--v~i~~~   87 (410)
                      .+++|+|.| +|.||+.+++.|+..|. +++.++.+.   ++.             .|..    .+.++ +.  -+++.+
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r~~---~~~-------------~~~~----~~~~~-~~~~~~~~~~   61 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGY-TVRATVRDP---TNV-------------KKVK----HLLDL-PKAETHLTLW   61 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCT---TCH-------------HHHH----HHHTS-TTHHHHEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCC-EEEEEECCc---chh-------------HHHH----HHHhc-ccCCCeEEEE
Confidence            568899998 89999999999999986 455544221   000             0111    11111 11  135556


Q ss_pred             ccCCCCCcchHhhhccCcEEEEc
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNG  110 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a  110 (410)
                      ..++++...-...++++|+||.+
T Consensus        62 ~~Dl~d~~~~~~~~~~~d~Vih~   84 (337)
T 2c29_D           62 KADLADEGSFDEAIKGCTGVFHV   84 (337)
T ss_dssp             ECCTTSTTTTHHHHTTCSEEEEC
T ss_pred             EcCCCCHHHHHHHHcCCCEEEEe
Confidence            66775544345667889999984

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=89.39  E-value=1.1  Score=45.99  Aligned_cols=82  Identities=18%  Similarity=0.234  Sum_probs=53.1

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      +++|+|.| .|+||.++++.|+..|..++.+++...-+                .++.+.+.+.+...  ..++..+..+
T Consensus       259 ~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~----------------~~~~~~l~~~l~~~--g~~v~~~~~D  320 (511)
T 2z5l_A          259 SGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPE----------------APGAAELAEELRGH--GCEVVHAACD  320 (511)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGG----------------STTHHHHHHHHHTT--TCEEEEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcc----------------cHHHHHHHHHHHhc--CCEEEEEEeC
Confidence            46788886 89999999999999999889988743211                11233344445443  4567777777


Q ss_pred             CCCCcchHhhhcc--CcEEEEcc
Q 015243           91 VKDPKFNVEFFKQ--FNVVLNGL  111 (410)
Q Consensus        91 i~~~~~~~~~~~~--~DvVi~a~  111 (410)
                      +++...-..+++.  .|+||.+.
T Consensus       321 vtd~~~v~~~~~~~~ld~VVh~A  343 (511)
T 2z5l_A          321 VAERDALAALVTAYPPNAVFHTA  343 (511)
T ss_dssp             SSCHHHHHHHHHHSCCSEEEECC
T ss_pred             CCCHHHHHHHHhcCCCcEEEECC
Confidence            7654333344443  78887753

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=89.35  E-value=0.29  Score=47.44  Aligned_cols=36  Identities=19%  Similarity=0.304  Sum_probs=31.0

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .|.+++|.|||+|.+|..+++.|...|. ++.+.|..
T Consensus       161 ~l~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~dr~  196 (333)
T 3ba1_A          161 KFSGKRVGIIGLGRIGLAVAERAEAFDC-PISYFSRS  196 (333)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTC-CEEEECSS
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            4678899999999999999999999887 47887743

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=89.33  E-value=0.37  Score=46.46  Aligned_cols=36  Identities=22%  Similarity=0.483  Sum_probs=32.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE   48 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve   48 (410)
                      ...|+|||+|..|+.+|..|++.|.. ++|+|.+.+.
T Consensus         5 ~~dVvIIGgGi~Gl~~A~~La~~G~~-V~lle~~~~~   40 (382)
T 1y56_B            5 KSEIVVIGGGIVGVTIAHELAKRGEE-VTVIEKRFIG   40 (382)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSSTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCe-EEEEeCCCCC
Confidence            46899999999999999999999985 9999987654

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=89.24  E-value=0.33  Score=46.43  Aligned_cols=35  Identities=26%  Similarity=0.492  Sum_probs=30.2

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .|.+++|.|||+|.+|..+++.|...|. ++..+|.
T Consensus       139 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~  173 (307)
T 1wwk_A          139 ELEGKTIGIIGFGRIGYQVAKIANALGM-NILLYDP  173 (307)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             ccCCceEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence            4778999999999999999999999986 4777663

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=89.22  E-value=1.3  Score=37.09  Aligned_cols=40  Identities=10%  Similarity=0.185  Sum_probs=31.2

Q ss_pred             HHHHHH-hCCcEEEECC----cHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            5 RQLEAI-KGAKVLMVGA----GGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         5 e~q~~L-~~~~VlvvG~----GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +...-| .-.+|+|||+    |.+|..++++|...|+. +.-+++.
T Consensus         5 ~l~~ll~~p~~vaVvGas~~~g~~G~~~~~~l~~~G~~-v~~vnp~   49 (140)
T 1iuk_A            5 ELRAYLSQAKTIAVLGAHKDPSRPAHYVPRYLREQGYR-VLPVNPR   49 (140)
T ss_dssp             HHHHHHHHCCEEEEETCCSSTTSHHHHHHHHHHHTTCE-EEEECGG
T ss_pred             HHHHHHcCCCEEEEECCCCCCCChHHHHHHHHHHCCCE-EEEeCCC
Confidence            344455 5789999999    78999999999999984 5555544

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=89.19  E-value=0.33  Score=46.50  Aligned_cols=36  Identities=22%  Similarity=0.317  Sum_probs=31.0

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .|.+++|.|||+|.+|..+++.|...|. ++..+|..
T Consensus       141 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~  176 (311)
T 2cuk_A          141 DLQGLTLGLVGMGRIGQAVAKRALAFGM-RVVYHART  176 (311)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHCCC-EEEEECCC
Confidence            4778899999999999999999999986 57777743

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=89.18  E-value=0.35  Score=45.84  Aligned_cols=32  Identities=19%  Similarity=0.381  Sum_probs=28.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .+|.|||+|.+|+.+++.|+..|. +++++|.+
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~-~V~~~~~~   62 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGH-TVTVWNRT   62 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            689999999999999999999997 48887743

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A

Probab=89.16  E-value=0.91  Score=46.54  Aligned_cols=40  Identities=20%  Similarity=0.430  Sum_probs=35.4

Q ss_pred             HHHhCCcEEEECCcHHHHHHHHHHHH----hCC------CcEEEEeCCcc
Q 015243            8 EAIKGAKVLMVGAGGIGCELLKTLAL----SGF------QDIHIIDMDTI   47 (410)
Q Consensus         8 ~~L~~~~VlvvG~GgiG~ev~knLa~----~Gv------~~i~liD~D~V   47 (410)
                      ++|.+.||++.|+|+.|+.+++.|..    .|+      ++|.++|..-+
T Consensus       278 k~l~d~riv~~GAGaAg~gia~ll~~~~~~~G~~~eeA~~~i~~~D~~Gl  327 (555)
T 1gq2_A          278 NRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGL  327 (555)
T ss_dssp             SCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEE
T ss_pred             CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChHHHhCcEEEEECCCe
Confidence            36889999999999999999999998    896      69999997654

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=89.14  E-value=0.36  Score=46.30  Aligned_cols=33  Identities=18%  Similarity=0.325  Sum_probs=28.2

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ...||.|+|+|.+|+.++..|+..|. .++++|.
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~-~V~~~~r   45 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGE-EVILWAR   45 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCC-eEEEEeC
Confidence            46799999999999999999999995 5777763

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=89.11  E-value=1.4  Score=42.12  Aligned_cols=87  Identities=17%  Similarity=0.186  Sum_probs=51.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHh-CCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~-Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      .||.|||+|.+|...++.|... |+.-+.+.|.+                   ..+++.+++   +..  +.  .+ .+ 
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~-------------------~~~~~~~a~---~~g--~~--~~-~~-   56 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPF-------------------IEGAQRLAE---ANG--AE--AV-AS-   56 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSS-------------------HHHHHHHHH---TTT--CE--EE-SS-
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCC-------------------HHHHHHHHH---HcC--Cc--ee-CC-
Confidence            5899999999999999999886 43323355532                   223333222   222  22  22 11 


Q ss_pred             CCCcchHhhhc--cCcEEEEccCChHHHHHHHHHHHHCCCcEEE
Q 015243           92 KDPKFNVEFFK--QFNVVLNGLDNLDARRHVNRLCLAADVPLVE  133 (410)
Q Consensus        92 ~~~~~~~~~~~--~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~  133 (410)
                           ..+.+.  +.|+|+.|+.+.. ...+...|.+.+++++.
T Consensus        57 -----~~~~l~~~~~D~V~i~tp~~~-h~~~~~~al~~gk~v~~   94 (344)
T 3euw_A           57 -----PDEVFARDDIDGIVIGSPTST-HVDLITRAVERGIPALC   94 (344)
T ss_dssp             -----HHHHTTCSCCCEEEECSCGGG-HHHHHHHHHHTTCCEEE
T ss_pred             -----HHHHhcCCCCCEEEEeCCchh-hHHHHHHHHHcCCcEEE
Confidence                 234455  7899999886543 33344556677776664

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=89.10  E-value=0.31  Score=48.40  Aligned_cols=36  Identities=25%  Similarity=0.350  Sum_probs=31.8

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      +...+|+|+|+|++|..+++.+..+|. +++++|...
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~~  205 (401)
T 1x13_A          170 VPPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTRP  205 (401)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCG
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCH
Confidence            457899999999999999999999998 799988543

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=89.08  E-value=0.32  Score=45.67  Aligned_cols=32  Identities=22%  Similarity=0.425  Sum_probs=27.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ..+|.|||+|.+|+.+++.|+..|. +++++|.
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~   35 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGV-TVYAFDL   35 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-eEEEEeC
Confidence            4689999999999999999999996 5777763

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=89.07  E-value=0.52  Score=43.62  Aligned_cols=35  Identities=23%  Similarity=0.364  Sum_probs=29.5

Q ss_pred             HhCCcEEEECC---cHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVGA---GGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG~---GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      |.+++++|.|+   ||||.++++.|+..|. ++.++|.+
T Consensus         4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~-~V~~~~r~   41 (275)
T 2pd4_A            4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLN   41 (275)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESS
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence            56788999997   6999999999999996 48787743

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=89.06  E-value=0.26  Score=48.17  Aligned_cols=36  Identities=25%  Similarity=0.573  Sum_probs=31.5

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      +...+|+|||+|..|+.+|..|++.|+ +++|+|.+.
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~   59 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGI-DVSVYERDN   59 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEECSS
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            345689999999999999999999998 599999753

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=89.05  E-value=0.65  Score=44.30  Aligned_cols=33  Identities=27%  Similarity=0.339  Sum_probs=27.3

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCC----CcEEEEeCC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGF----QDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv----~~i~liD~D   45 (410)
                      ++|+|.| .|.+|+.+++.|...|-    .+++.+|.+
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~   39 (364)
T 2v6g_A            2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARR   39 (364)
T ss_dssp             EEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESS
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCC
Confidence            5799998 59999999999999882    468887754

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=88.98  E-value=0.89  Score=40.63  Aligned_cols=34  Identities=24%  Similarity=0.521  Sum_probs=28.2

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      +++|+|.| .|+||.++++.|+..|.. +.++|.+.
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~~-V~~~~r~~   36 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGYR-VVVLDLRR   36 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEESSC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEccCc
Confidence            56899998 689999999999999964 77777543

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=88.97  E-value=0.92  Score=43.71  Aligned_cols=33  Identities=21%  Similarity=0.320  Sum_probs=25.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHh--CCCcEEEEeC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALS--GFQDIHIIDM   44 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~--Gv~~i~liD~   44 (410)
                      ..||.|||+|.+|...++.|...  |+.-+.+.|.
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~   47 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDI   47 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECS
T ss_pred             cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcC
Confidence            46899999999999999999987  4443446553

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=88.93  E-value=1.9  Score=41.15  Aligned_cols=33  Identities=21%  Similarity=0.311  Sum_probs=28.3

Q ss_pred             CCcEEEECCcHHHHH-HHHHHHHhCCCcEEEEeCC
Q 015243           12 GAKVLMVGAGGIGCE-LLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        12 ~~~VlvvG~GgiG~e-v~knLa~~Gv~~i~liD~D   45 (410)
                      -++|.+||.|+.|.. +++.|...|.. +++.|..
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~-V~~~D~~   37 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFE-VSGCDAK   37 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCE-EEEEcCC
Confidence            368999999999996 89999999975 8888853

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=88.93  E-value=0.82  Score=46.11  Aligned_cols=94  Identities=19%  Similarity=0.262  Sum_probs=58.6

Q ss_pred             CCcEEEECCcHH-HHHHHHHHHH--hCC--CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHH---HH-HhhCCCC
Q 015243           12 GAKVLMVGAGGI-GCELLKTLAL--SGF--QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARD---AV-LKFRPQM   82 (410)
Q Consensus        12 ~~~VlvvG~Ggi-G~ev~knLa~--~Gv--~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~---~l-~~~np~v   82 (410)
                      ..||.|||+|++ |..++..|+.  .++  .++.|+|-|.                 |+.|++.+..   .+ .......
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~-----------------~~e~~~~~~~~~~~~~~~~~~~~   69 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPE-----------------GKEKLEIVGALAKRMVEKAGVPI   69 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGG-----------------GHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCC-----------------ChHHHHHHHHHHHHHHhhcCCCc
Confidence            468999999999 8888888887  565  5799988322                 2244444222   22 2445566


Q ss_pred             eEEEEccCCCCCcchHhhhccCcEEEEccCC--hHHHHHHHHHHHHCCC
Q 015243           83 SITAHHANVKDPKFNVEFFKQFNVVLNGLDN--LDARRHVNRLCLAADV  129 (410)
Q Consensus        83 ~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn--~~~r~~i~~~c~~~~~  129 (410)
                      +|.+..+       -.+-++++|+||.+...  .+.|.....+..+++.
T Consensus        70 ~i~~t~D-------~~eal~gAD~VVitagv~~~~~~~rd~~ip~~~g~  111 (450)
T 1s6y_A           70 EIHLTLD-------RRRALDGADFVTTQFRVGGLEARAKDERIPLKYGV  111 (450)
T ss_dssp             EEEEESC-------HHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTC
T ss_pred             EEEEeCC-------HHHHhCCCCEEEEcCCCCCCcchhhhhhhhhhcCc
Confidence            7766421       12447899999998764  2344444444555554

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=88.89  E-value=0.29  Score=47.88  Aligned_cols=99  Identities=19%  Similarity=0.292  Sum_probs=56.8

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      ++..||.|+| .|.+|.++++.|...+.-++..+.               +..+.|+.-.++-    ..+...+ +    
T Consensus        14 M~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~---------------~~~~~g~~~~~~~----~~~~~~v-~----   69 (359)
T 1xyg_A           14 EKDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMT---------------ADRKAGQSMESVF----PHLRAQK-L----   69 (359)
T ss_dssp             -CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEB---------------CSTTTTSCHHHHC----GGGTTSC-C----
T ss_pred             ccCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEe---------------CchhcCCCHHHhC----chhcCcc-c----
Confidence            3457999999 799999999999876532344332               1122332211110    0111110 0    


Q ss_pred             cCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecc
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT  136 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~  136 (410)
                      .++.-..  .+.|+++|+|+.|+.....+......  +.++.+|+.+.
T Consensus        70 ~dl~~~~--~~~~~~vDvVf~atp~~~s~~~a~~~--~aG~~VId~sa  113 (359)
T 1xyg_A           70 PTLVSVK--DADFSTVDAVFCCLPHGTTQEIIKEL--PTALKIVDLSA  113 (359)
T ss_dssp             CCCBCGG--GCCGGGCSEEEECCCTTTHHHHHHTS--CTTCEEEECSS
T ss_pred             ccceecc--hhHhcCCCEEEEcCCchhHHHHHHHH--hCCCEEEECCc
Confidence            1110011  23467899999999877777666555  77888888764

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=88.87  E-value=0.4  Score=46.83  Aligned_cols=36  Identities=28%  Similarity=0.480  Sum_probs=31.5

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCC-cEEEEeCCc
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMDT   46 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~-~i~liD~D~   46 (410)
                      ..+||+|||+|.-|..+|+.|.+.|-+ +|+|||...
T Consensus         1 aGKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~   37 (401)
T 3vrd_B            1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNE   37 (401)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CcCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCC
Confidence            368999999999999999999999875 899998654

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=88.79  E-value=0.37  Score=46.49  Aligned_cols=36  Identities=25%  Similarity=0.450  Sum_probs=31.3

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .|.+++|.|||+|.+|..+++.|...|. ++..+|..
T Consensus       137 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~  172 (324)
T 3hg7_A          137 GLKGRTLLILGTGSIGQHIAHTGKHFGM-KVLGVSRS  172 (324)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             ccccceEEEEEECHHHHHHHHHHHhCCC-EEEEEcCC
Confidence            4778999999999999999999999997 47777754

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=88.77  E-value=0.34  Score=45.34  Aligned_cols=31  Identities=29%  Similarity=0.529  Sum_probs=27.1

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ++|.|||+|.+|+.+++.|+..|. +++++|.
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~-~V~~~~~   31 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGY-PLIIYDV   31 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTC-CEEEECS
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCC-EEEEEeC
Confidence            379999999999999999999996 5777763

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=88.74  E-value=1.3  Score=42.16  Aligned_cols=33  Identities=21%  Similarity=0.269  Sum_probs=25.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHh-CCCcEEEEeC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALS-GFQDIHIIDM   44 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~-Gv~~i~liD~   44 (410)
                      ..||.|||+|.+|...++.|... |+.-+.+.|.
T Consensus         3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~   36 (331)
T 4hkt_A            3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADA   36 (331)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECS
T ss_pred             ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECC
Confidence            35899999999999999999985 4443345664

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=88.74  E-value=0.38  Score=46.30  Aligned_cols=36  Identities=19%  Similarity=0.312  Sum_probs=31.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE   48 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve   48 (410)
                      ...|+|||+|..|+.+|..|++.|. +++|+|.+.+.
T Consensus        17 ~~dvvIIGgG~~Gl~~A~~La~~G~-~V~llE~~~~~   52 (382)
T 1ryi_A           17 HYEAVVIGGGIIGSAIAYYLAKENK-NTALFESGTMG   52 (382)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCC-cEEEEeCCCCC
Confidence            4689999999999999999999997 59999987544

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=88.73  E-value=0.39  Score=44.16  Aligned_cols=34  Identities=18%  Similarity=0.254  Sum_probs=30.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      ..+|+|||+|..|..+|..|++.|. +++|+|...
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~   35 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARK-NILLVDAGE   35 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC-CEEEEECCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            3589999999999999999999997 699999653

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=88.72  E-value=0.36  Score=46.67  Aligned_cols=35  Identities=23%  Similarity=0.254  Sum_probs=30.9

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .|.+++|.|||+|.+|..+++.|...|.. +..+|.
T Consensus       143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~d~  177 (331)
T 1xdw_A          143 EVRNCTVGVVGLGRIGRVAAQIFHGMGAT-VIGEDV  177 (331)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECC
Confidence            47889999999999999999999999865 777774

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=88.70  E-value=0.46  Score=43.27  Aligned_cols=38  Identities=21%  Similarity=0.351  Sum_probs=26.4

Q ss_pred             HHHHHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243            5 RQLEAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus         5 e~q~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      +....+.+++|+|.| .||||.++++.|+..|.. +.++|
T Consensus         6 ~~~~~~~~k~vlITGas~giG~~ia~~l~~~G~~-v~~~~   44 (256)
T 3ezl_A            6 HHHMVMSQRIAYVTGGMGGIGTSICQRLHKDGFR-VVAGC   44 (256)
T ss_dssp             -------CEEEEETTTTSHHHHHHHHHHHHTTEE-EEEEE
T ss_pred             CCCCCCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEe
Confidence            344567788899987 689999999999999975 55555

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=88.66  E-value=0.36  Score=46.69  Aligned_cols=36  Identities=22%  Similarity=0.225  Sum_probs=31.2

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .|.+++|.|||+|.+|..+++.|...|.. +..+|..
T Consensus       142 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~d~~  177 (333)
T 1dxy_A          142 ELGQQTVGVMGTGHIGQVAIKLFKGFGAK-VIAYDPY  177 (333)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCC
Confidence            47889999999999999999999998864 7777743

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=88.65  E-value=0.28  Score=47.09  Aligned_cols=35  Identities=14%  Similarity=0.345  Sum_probs=31.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCcc
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTI   47 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~V   47 (410)
                      ...|+|||+|.+|+.+|..|++.|. +++|+|.+..
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~-~V~vle~~~~   36 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGL-NVLMTDAHMP   36 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTC-CEEEECSSCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCC
Confidence            4579999999999999999999997 5999997754

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=88.63  E-value=0.37  Score=45.82  Aligned_cols=31  Identities=29%  Similarity=0.442  Sum_probs=27.6

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .+|.|+|+|.+|+.++..|+..|. +++++|.
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~-~V~~~~r   31 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGN-EVRIWGT   31 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCC-EEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEEc
Confidence            379999999999999999999995 6888875

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=88.63  E-value=0.37  Score=46.18  Aligned_cols=30  Identities=30%  Similarity=0.424  Sum_probs=27.6

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      -|+|||+|..|+.+|..|++.|+. ++|+|.
T Consensus         6 DViIVGaGpaGl~~A~~La~~G~~-V~v~Er   35 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYGLK-TLMIEK   35 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCC-EEEECS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCc-EEEEeC
Confidence            599999999999999999999986 888885

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=88.60  E-value=0.43  Score=45.59  Aligned_cols=32  Identities=38%  Similarity=0.715  Sum_probs=25.7

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEE
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHII   42 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~li   42 (410)
                      ....+|+|+|+|++|+.++..|+..|. .++++
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~-~V~l~   48 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLARAGH-EVILI   48 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHHHTTC-EEEEE
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHHCCC-eEEEE
Confidence            356799999999999999999999995 46664

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=88.59  E-value=2.9  Score=37.23  Aligned_cols=87  Identities=14%  Similarity=0.229  Sum_probs=58.1

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      ..++++|+|+|+-|.+++..|...|..-+-++|+|.-. .    . +.                      .+.+-.....
T Consensus        11 ~~k~v~IiGAGg~g~~v~~~l~~~~~~~vgfiDd~~~~-~----~-~~----------------------g~~Vlg~~~~   62 (220)
T 4ea9_A           11 AIGGVVIIGGGGHAKVVIESLRACGETVAAIVDADPTR-R----A-VL----------------------GVPVVGDDLA   62 (220)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHHTTCCEEEEECSCC--------C-BT----------------------TBCEEESGGG
T ss_pred             CCCCEEEEcCCHHHHHHHHHHHhCCCEEEEEEeCCccc-C----c-CC----------------------CeeEECCHHH
Confidence            45689999999999999999998888888889876321 1    0 11                      1222221111


Q ss_pred             CCCCcchHhhhc-cCcEEEEccCChHHHHHHHHHHHHCCCcE
Q 015243           91 VKDPKFNVEFFK-QFNVVLNGLDNLDARRHVNRLCLAADVPL  131 (410)
Q Consensus        91 i~~~~~~~~~~~-~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~  131 (410)
                            ...+.+ ..+.++.|..+...|..+.+.+...+..+
T Consensus        63 ------~~~~~~~~~~~v~iAIg~~~~R~~i~~~l~~~g~~~   98 (220)
T 4ea9_A           63 ------LPMLREQGLSRLFVAIGDNRLRQKLGRKARDHGFSL   98 (220)
T ss_dssp             ------HHHHHHTTCCEEEECCCCHHHHHHHHHHHHHTTCEE
T ss_pred             ------HHHhhcccccEEEEecCCHHHHHHHHHHHHhcCCCc
Confidence                  112222 23567889888899999999999887643

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=88.56  E-value=0.35  Score=46.48  Aligned_cols=35  Identities=26%  Similarity=0.322  Sum_probs=30.2

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .|.+++|.|||+|.+|..+++.|...|. ++..+|.
T Consensus       143 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~  177 (320)
T 1gdh_A          143 KLDNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDT  177 (320)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECS
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence            4778999999999999999999998885 5777763

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=88.53  E-value=0.41  Score=43.89  Aligned_cols=36  Identities=31%  Similarity=0.422  Sum_probs=29.1

Q ss_pred             HHHhCCcEEEECCc---HHHHHHHHHHHHhCCCcEEEEeC
Q 015243            8 EAIKGAKVLMVGAG---GIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         8 ~~L~~~~VlvvG~G---giG~ev~knLa~~Gv~~i~liD~   44 (410)
                      -.+++++++|.|++   |||.++++.|+..|.. +.++|.
T Consensus        16 ~~l~~k~vlITGas~~~giG~~~a~~l~~~G~~-v~~~~~   54 (267)
T 3gdg_A           16 LSLKGKVVVVTGASGPKGMGIEAARGCAEMGAA-VAITYA   54 (267)
T ss_dssp             HCCTTCEEEETTCCSSSSHHHHHHHHHHHTSCE-EEECBS
T ss_pred             cCcCCCEEEEECCCCCCChHHHHHHHHHHCCCe-EEEEeC
Confidence            34678889999975   9999999999999975 666553

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=88.46  E-value=0.7  Score=42.40  Aligned_cols=38  Identities=24%  Similarity=0.319  Sum_probs=29.3

Q ss_pred             HHHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            7 LEAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         7 q~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ...+.+++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus        16 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~   54 (253)
T 2nm0_A           16 PRSHMSRSVLVTGGNRGIGLAIARAFADAGD-KVAITYRS   54 (253)
T ss_dssp             ----CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            3467788899998 68999999999999996 57777764

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=88.45  E-value=0.94  Score=44.41  Aligned_cols=92  Identities=22%  Similarity=0.362  Sum_probs=56.4

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCC--cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQ--DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~--~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      ..||.||| .|.+|.|+++.|...++.  .+.++..               .+..|+.-+         +. ...+... 
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as---------------~~saG~~~~---------~~-~~~~~~~-   55 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLAS---------------ARSAGKSLK---------FK-DQDITIE-   55 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEEC---------------TTTTTCEEE---------ET-TEEEEEE-
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEc---------------cccCCCcce---------ec-CCCceEe-
Confidence            45899999 677899999999987654  3444432               222333211         00 1112111 


Q ss_pred             cCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecc
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT  136 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~  136 (410)
                       .++     .+.++++|+|+.|+....++.+.... ...+..+|+.+.
T Consensus        56 -~~~-----~~~~~~~Dvvf~a~~~~~s~~~a~~~-~~~G~~vIDlSa   96 (366)
T 3pwk_A           56 -ETT-----ETAFEGVDIALFSAGSSTSAKYAPYA-VKAGVVVVDNTS   96 (366)
T ss_dssp             -ECC-----TTTTTTCSEEEECSCHHHHHHHHHHH-HHTTCEEEECSS
T ss_pred             -eCC-----HHHhcCCCEEEECCChHhHHHHHHHH-HHCCCEEEEcCC
Confidence             111     12257899999999877666665554 567888998764

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=88.43  E-value=1.4  Score=42.66  Aligned_cols=36  Identities=33%  Similarity=0.442  Sum_probs=25.9

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHH-H-hCCCcEEEEeC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLA-L-SGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa-~-~Gv~~i~liD~   44 (410)
                      .++..||.|||+|.+|...++.|. . .|+.-+.+.|.
T Consensus        20 ~m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~   57 (357)
T 3ec7_A           20 QGMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDI   57 (357)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECS
T ss_pred             CCCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeC
Confidence            455679999999999999999998 4 34443445553

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=88.39  E-value=1.8  Score=43.45  Aligned_cols=89  Identities=17%  Similarity=0.234  Sum_probs=53.9

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      .+-|+.|||+|.+|..++.+|+..|. +++++|.|.-....|++.-. ...+.|..  +.+++.+.  ...+..+.   +
T Consensus         7 ~~~~~~vIGlG~vG~~~A~~La~~G~-~V~~~D~~~~kv~~l~~g~~-~~~epgl~--~~~~~~~~--~g~l~~tt---d   77 (446)
T 4a7p_A            7 GSVRIAMIGTGYVGLVSGACFSDFGH-EVVCVDKDARKIELLHQNVM-PIYEPGLD--ALVASNVK--AGRLSFTT---D   77 (446)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHTTTCC-SSCCTTHH--HHHHHHHH--TTCEEEES---C
T ss_pred             CceEEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHhcCCC-CccCCCHH--HHHHhhcc--cCCEEEEC---C
Confidence            35789999999999999999999996 48888877655555554321 11122321  22222221  12222211   1


Q ss_pred             CCCCcchHhhhccCcEEEEccCCh
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLDNL  114 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~Dn~  114 (410)
                            ..+-++++|+||.|+.++
T Consensus        78 ------~~ea~~~aDvvii~Vptp   95 (446)
T 4a7p_A           78 ------LAEGVKDADAVFIAVGTP   95 (446)
T ss_dssp             ------HHHHHTTCSEEEECCCCC
T ss_pred             ------HHHHHhcCCEEEEEcCCC
Confidence                  124567899999996554

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=88.38  E-value=0.41  Score=47.55  Aligned_cols=34  Identities=24%  Similarity=0.284  Sum_probs=30.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      ..+|+|||+|..|+.++..|++.|+ +++|+|...
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~-~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDV-DVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTC-EEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCC-eEEEEcCCC
Confidence            3689999999999999999999998 599998764

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=88.32  E-value=0.37  Score=46.96  Aligned_cols=34  Identities=24%  Similarity=0.479  Sum_probs=30.1

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      .|.+++|.|||+|.+|..+++.|...|+ ++...|
T Consensus       165 ~l~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d  198 (347)
T 1mx3_A          165 RIRGETLGIIGLGRVGQAVALRAKAFGF-NVLFYD  198 (347)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEC
T ss_pred             CCCCCEEEEEeECHHHHHHHHHHHHCCC-EEEEEC
Confidence            4788999999999999999999998887 477766

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=88.28  E-value=0.44  Score=45.27  Aligned_cols=146  Identities=16%  Similarity=0.306  Sum_probs=75.3

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCC---eEEEE
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM---SITAH   87 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v---~i~~~   87 (410)
                      ..++|.|||+|-+|+.++.+|+ .|. .++++|.+.                   .+.+.+.+.+    .+-   .++..
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~-~V~v~d~~~-------------------~~~~~~~~~l----~~~~~~~i~~~   65 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKH-EVVLQDVSE-------------------KALEAAREQI----PEELLSKIEFT   65 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTS-EEEEECSCH-------------------HHHHHHHHHS----CGGGGGGEEEE
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCC-EEEEEECCH-------------------HHHHHHHHHH----HHHHhCCeEEe
Confidence            4689999999999999999999 998 588887322                   2333333331    000   12221


Q ss_pred             ccCCCCCcchHhhhccCcEEEEccC-ChHHHHHHHHHHHH-CCCcEE-EecccCccceEEEEeCCCCccccccCCCCCCC
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGLD-NLDARRHVNRLCLA-ADVPLV-ESGTTGFLGQVTVHVKGKTECYECQPKPAPKT  164 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~D-n~~~r~~i~~~c~~-~~~p~i-~~g~~G~~G~v~~~~~~~t~c~~C~~~~~~~~  164 (410)
                       ..+     . + ++++|+||.|+- +.+.+..+-..... -+..+. ++++.... .+.-.......+....+-.+...
T Consensus        66 -~~~-----~-~-~~~aDlVieavpe~~~vk~~l~~~l~~~~~~IlasntSti~~~-~~a~~~~~~~r~~G~Hf~~Pv~~  136 (293)
T 1zej_A           66 -TTL-----E-K-VKDCDIVMEAVFEDLNTKVEVLREVERLTNAPLCSNTSVISVD-DIAERLDSPSRFLGVHWMNPPHV  136 (293)
T ss_dssp             -SSC-----T-T-GGGCSEEEECCCSCHHHHHHHHHHHHTTCCSCEEECCSSSCHH-HHHTTSSCGGGEEEEEECSSTTT
T ss_pred             -CCH-----H-H-HcCCCEEEEcCcCCHHHHHHHHHHHhcCCCCEEEEECCCcCHH-HHHHHhhcccceEeEEecCcccc
Confidence             111     1 3 689999999874 44444443222222 232332 23332111 00000000000111111112234


Q ss_pred             CCceeeccCCCcchHHHHHHHHHHHHH
Q 015243          165 YPVCTITSTPSKFVHCIVWAKDLLFAK  191 (410)
Q Consensus       165 ~p~cti~~~p~~~~h~i~~a~~~~f~~  191 (410)
                      .+...+...+.+....+..+++ +++.
T Consensus       137 ~~lveiv~g~~t~~~~~~~~~~-l~~~  162 (293)
T 1zej_A          137 MPLVEIVISRFTDSKTVAFVEG-FLRE  162 (293)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHH-HHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH-HHHH
Confidence            5677787777777778888887 4555

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=88.27  E-value=0.35  Score=49.74  Aligned_cols=35  Identities=26%  Similarity=0.409  Sum_probs=27.0

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .+.+++++|+|+||+|..+++.|+..|. ++++++.
T Consensus       361 ~l~~k~vlV~GaGGig~aia~~L~~~G~-~V~i~~R  395 (523)
T 2o7s_A          361 PLASKTVVVIGAGGAGKALAYGAKEKGA-KVVIANR  395 (523)
T ss_dssp             -----CEEEECCSHHHHHHHHHHHHHCC--CEEEES
T ss_pred             ccCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence            4677899999999999999999999998 7888763

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=88.22  E-value=0.65  Score=44.25  Aligned_cols=35  Identities=14%  Similarity=0.383  Sum_probs=30.7

Q ss_pred             HHhCCcEEEECCcH-HHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVGAGG-IGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG~Gg-iG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .|.+++++|||.|+ +|..+++.|...|.. +++++.
T Consensus       162 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAt-Vtv~~~  197 (300)
T 4a26_A          162 EMAGKRAVVLGRSNIVGAPVAALLMKENAT-VTIVHS  197 (300)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCE-EEEECT
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeC
Confidence            36889999999998 799999999999984 888864

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=88.22  E-value=0.4  Score=49.02  Aligned_cols=35  Identities=29%  Similarity=0.534  Sum_probs=31.0

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +.+++|+|+|+|.+|..+++.+...|. +++++|.+
T Consensus       272 l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~  306 (494)
T 3ce6_A          272 IGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEID  306 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            567899999999999999999999997 78888754

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=88.22  E-value=0.45  Score=46.12  Aligned_cols=36  Identities=19%  Similarity=0.306  Sum_probs=30.6

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      +...+|+|||+|..|+.+|..|++.|+ +++|+|.+.
T Consensus         9 m~~~dVvIVGaG~aGl~~A~~L~~~G~-~v~viE~~~   44 (379)
T 3alj_A            9 GKTRRAEVAGGGFAGLTAAIALKQNGW-DVRLHEKSS   44 (379)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Confidence            456789999999999999999999997 599998654

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=88.18  E-value=0.66  Score=42.41  Aligned_cols=35  Identities=31%  Similarity=0.538  Sum_probs=26.8

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .|+++.++|.| .||||.++++.|+..|.. +.++|.
T Consensus         6 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r   41 (257)
T 3tl3_A            6 EIRDAVAVVTGGASGLGLATTKRLLDAGAQ-VVVLDI   41 (257)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHHTCE-EEEEES
T ss_pred             eecCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            47788899998 589999999999999964 777764

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=88.14  E-value=0.42  Score=46.05  Aligned_cols=36  Identities=28%  Similarity=0.344  Sum_probs=31.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE   48 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve   48 (410)
                      ...|+|||+|..|+.+|..|++.|.. ++|+|.+..-
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~~-V~vie~~~~~   38 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGVK-TLLVDAFDPP   38 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCC-EEEECSSCSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCe-EEEEeCCCCC
Confidence            35799999999999999999999974 9999977653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	410
d1yovb1	426	c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [T	3e-59
d1yovb1	426	c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [T	5e-16
d1yova1	529	c.111.1.2 (A:6-534) Amyloid beta precursor protein	3e-56
d1jw9b_	247	c.111.1.1 (B:) Molybdenum cofactor biosynthesis pr	3e-24

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Length = 426

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  196 bits (500), Expect = 3e-59
 Identities = 84/200 (42%), Positives = 122/200 (61%), Gaps = 16/200 (8%)

Query: 4   ERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV 63
           E     +   KVL++GAGG+GCELLK LALSGF+ IH+IDMDTI+VSNLNRQFLFR   +
Sbjct: 29  ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI 88

Query: 64  GQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL 123
           G+ KA+VA + +    P  ++  H   ++D  FN  F++QF++++ GLD++ ARR +N +
Sbjct: 89  GRPKAEVAAEFLNDRVPNCNVVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGM 146

Query: 124 CL------------AADVPLVESGTTGFLGQVTVHVKGKTECYECQPK--PAPKTYPVCT 169
            +            ++ VPL++ GT GF G   V + G T C EC  +  P    +P+CT
Sbjct: 147 LISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCT 206

Query: 170 ITSTPSKFVHCIVWAKDLLF 189
           I S P    HCI + + L +
Sbjct: 207 IASMPRLPEHCIEYVRMLQW 226

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Length = 426

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.1 bits (189), Expect = 5e-16
 Identities = 20/86 (23%), Positives = 38/86 (44%)

Query: 320 LFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVAT 379
           L + K +     +  D DD   ++++   +  RA+ + I   +    +G+   I+ AVA+
Sbjct: 224 LQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVAS 283

Query: 380 TNAIIAGLIVIEAIKVLLKDTDKYRC 405
           TNA+IA +   E  K+          
Sbjct: 284 TNAVIAAVCATEVFKIATSAYIPLNN 309

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  191 bits (486), Expect = 3e-56
 Identities = 41/199 (20%), Positives = 79/199 (39%), Gaps = 12/199 (6%)

Query: 5   RQL--------EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQF 56
           RQL        EA++ A V ++ A   G E+LK L L G     IID + +   +    F
Sbjct: 10  RQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNF 69

Query: 57  LFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD-PKFNVEFFKQFNVVLNGLDNLD 115
             ++S +G+++A+ A + + +    +S +    + ++    +  FF +F VV+       
Sbjct: 70  FLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPES 129

Query: 116 ARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPS 175
               +  +   + +PL+   T G +G + + +K      E  P        +      P 
Sbjct: 130 TSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHP-VIESHPD--NALEDLRLDKPFPE 186

Query: 176 KFVHCIVWAKDLLFAKLFG 194
              H   +  D +  K   
Sbjct: 187 LREHFQSYDLDHMEKKDHS 205

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} Length = 247

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

 Score = 98.5 bits (244), Expect = 3e-24
 Identities = 63/218 (28%), Positives = 102/218 (46%), Gaps = 2/218 (0%)

Query: 8   EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK 67
           EA+K ++VL+VG GG+GC   + LA +G  ++ ++D DT+ +SNL RQ L   + VGQ K
Sbjct: 26  EALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPK 85

Query: 68  AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127
            + ARDA+ +  P ++IT  +A + D +      +   V+ +  DN+  R  +N  C AA
Sbjct: 86  VESARDALTRINPHIAITPVNALLDDAELAALIAEHDLVL-DCTDNVAVRNQLNAGCFAA 144

Query: 128 DVPLVESGTTGFLGQVTVHVKGKTE-CYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKD 186
            VPLV        GQ+TV      E CY C  +   +    C      +  +  I   + 
Sbjct: 145 KVPLVSGAAIRMEGQITVFTYQDGEPCYRCLSRLFGENALTCVEAGVMAPLIGVIGSLQA 204

Query: 187 LLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKD 224
           +   K+     +     +   DA +    E   +R   
Sbjct: 205 MEAIKMLAGYGKPASGKIVMYDAMTCQFREMKLMRNPG 242

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	410
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	100.0
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	100.0
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.94
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.58
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.42
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.35
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.29
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.24
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.15
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.13
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.8
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.78
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.75
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.74
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.51
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.51
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.42
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	96.4
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	96.4
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.39
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	96.36
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.33
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.3
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.29
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.27
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.16
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.15
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.15
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.11
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.1
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.09
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.08
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.06
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	95.98
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.97
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.96
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	95.96
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.91
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	95.89
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.81
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	95.74
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.72
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	95.66
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	95.64
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.61
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	95.6
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	95.58
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	95.57
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.57
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.55
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.52
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	95.49
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.48
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.47
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.45
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.45
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.43
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	95.37
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	95.36
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.34
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	95.32
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.32
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	95.3
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	95.3
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.29
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	95.21
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	95.18
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	95.17
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.16
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	95.06
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.03
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	95.0
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	94.95
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	94.95
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	94.92
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.91
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	94.91
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.91
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	94.88
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.83
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	94.8
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.79
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.77
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	94.77
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	94.72
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	94.65
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	94.44
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	94.43
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.37
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	94.32
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	94.28
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	94.21
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	94.19
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.18
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	94.17
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	94.16
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	94.08
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.03
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	93.99
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	93.96
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	93.85
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	93.82
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	93.8
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	93.77
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	93.75
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	93.65
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	93.56
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	93.53
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	93.49
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	93.49
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	93.43
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	93.39
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	93.38
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	93.37
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	93.35
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	93.31
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	93.31
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	93.26
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	93.26
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.23
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	93.18
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	93.11
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	93.06
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	92.97
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	92.87
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	92.87
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	92.79
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	92.77
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	92.75
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	92.71
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	92.64
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	92.62
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	92.62
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	92.61
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	92.59
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	92.43
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	92.41
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	92.36
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.32
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	92.32
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	92.31
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	92.26
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	92.25
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	92.25
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	92.24
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	92.17
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	92.09
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	92.02
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	92.01
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	91.98
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	91.98
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	91.91
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	91.89
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	91.89
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	91.78
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	91.78
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	91.72
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	91.66
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	91.6
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	91.53
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	91.51
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	91.51
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	91.43
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	91.41
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	91.33
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	91.3
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	91.29
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	91.08
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	91.04
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	90.96
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	90.94
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	90.9
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	90.89
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	90.88
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	90.7
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	90.69
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	90.68
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	90.61
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	90.4
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	90.39
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	90.38
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	90.33
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	89.93
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	89.88
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	89.77
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	89.61
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	89.6
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	89.6
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	89.59
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	89.45
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	89.4
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	89.27
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	89.09
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	89.09
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	88.95
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	88.84
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	88.79
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	88.65
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	88.6
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	88.56
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	88.56
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	88.5
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	88.48
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	88.27
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	88.23
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	88.21
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	88.2
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	88.2
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	88.08
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	88.0
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	87.94
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	87.82
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	87.8
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	87.75
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	87.57
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	87.55
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	87.46
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	87.45
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	87.41
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	86.87
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	86.86
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	86.8
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	86.76
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	86.73
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	86.7
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	86.55
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	86.54
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	86.48
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	86.47
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	86.47
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	86.45
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	86.43
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	86.31
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	86.3
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	86.25
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	86.13
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	86.05
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	86.05
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	85.58
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	85.56
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	85.49
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	85.37
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	85.35
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	85.05
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	84.77
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	84.58
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	84.58
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	84.4
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	84.37
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	84.34
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	84.2
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	84.13
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	84.02
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	83.95
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	83.9
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	83.88
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	83.87
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	83.78
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	83.68
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	83.61
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	83.49
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	83.26
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	83.17
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	82.83
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	82.4
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	82.39
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	82.33
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	82.32
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	82.09
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	81.83
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	81.77
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	81.7
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	81.47
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	81.46
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	81.43
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	81.33
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	81.03
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	81.0
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	80.65
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	80.52

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-65  Score=517.73  Aligned_cols=269  Identities=39%  Similarity=0.653  Sum_probs=243.2

Q ss_pred             HHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCe
Q 015243            4 ERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMS   83 (410)
Q Consensus         4 ~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~   83 (410)
                      ++.|.+|+++||+|||+||+|||++|+|+++|||+|+|+|+|+|+.+||+|||||+.+|+|++|+++++++++++||+++
T Consensus        29 e~~~~~l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~  108 (426)
T d1yovb1          29 ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCN  108 (426)
T ss_dssp             SHHHHHHHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCC
T ss_pred             HHHHHHHhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCc
Confidence            56688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHH------------CCCcEEEecccCccceEEEEeCCCC
Q 015243           84 ITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA------------ADVPLVESGTTGFLGQVTVHVKGKT  151 (410)
Q Consensus        84 i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~------------~~~p~i~~g~~G~~G~v~~~~~~~t  151 (410)
                      |+++..++.+  .+.++++++|+||+|+||.++|.++|++|+.            .++|+|++|+.|+.|+++++.|+.+
T Consensus       109 i~~~~~~i~~--~~~~~~~~~DlVi~~~Dn~~aR~~in~~c~~l~k~~~~~~~~~~~iPlI~gg~~G~~G~~~vi~p~~t  186 (426)
T d1yovb1         109 VVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMT  186 (426)
T ss_dssp             CEEECSCGGG--BCHHHHTTCSEEEECCSCHHHHHHHHHHHHHTCCEETTEECGGGCCCEEEEEEETTEEEEEEECTTTS
T ss_pred             eEeeeccccc--hHHHHHHhcchheeccCcHHHHHHHHHHHHHhhcccccccccccCCceEEeEEeeeEEEEEEECCCCC
Confidence            9999999854  4568999999999999999999999999974            5789999999999999999999999


Q ss_pred             ccccccCC--CCCCCCCceeeccCCCcchHHHHHHHHHHHHHHhCCCCccccccccCccccchhhHHhhhhcCCcccHHH
Q 015243          152 ECYECQPK--PAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQ  229 (410)
Q Consensus       152 ~c~~C~~~--~~~~~~p~cti~~~p~~~~h~i~~a~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (410)
                      +||+|..+  |+++++|+|||+++|+.++|||.||+.+.|...                                     
T Consensus       187 ~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~hci~~ak~l~~~~~-------------------------------------  229 (426)
T d1yovb1         187 ACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKE-------------------------------------  229 (426)
T ss_dssp             CCGGGGGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHTHHHHS-------------------------------------
T ss_pred             CCcCcCCCCCCCCCCCCcccccCCCCCchheeehhhhhccccc-------------------------------------
Confidence            99999865  566889999999999999999999997422100                                     


Q ss_pred             HHHHHHHhhhcccHHHHhcCCcccCCCCCCCccccCCCCCcchhhhcccccccccccchhhhHHhhhCCCCCCCcccchh
Q 015243          230 YGRRIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLE  309 (410)
Q Consensus       230 ~a~~~f~~~F~~~I~~ll~~~~fw~~k~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (410)
                                                 + |.                                                 
T Consensus       230 ---------------------------~-~~-------------------------------------------------  232 (426)
T d1yovb1         230 ---------------------------Q-PF-------------------------------------------------  232 (426)
T ss_dssp             ---------------------------C-TT-------------------------------------------------
T ss_pred             ---------------------------c-cc-------------------------------------------------
Confidence                                       0 00                                                 


Q ss_pred             chHHHHHHHHHHHHhhhhccCCccccCCcHHHHHHHHHHHHHHHHhcCCCCCChhHHHhhhccccchhhhHHHHHHHHHH
Q 015243          310 SSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIV  389 (410)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~p~~FeKDDd~hidFI~AasNLRA~ny~I~~~~~~~~k~iag~IiPAiatT~aivagl~~  389 (410)
                                         ..+..||+||+.||+||++++|+||.+|+|+..|++.+|++||+||||||||||||||+++
T Consensus       233 -------------------~~~~~~d~dd~~~i~~i~~~a~~ra~~~~I~~~~~~~~k~ia~nIIPaiatTnAIVagl~~  293 (426)
T d1yovb1         233 -------------------GEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCA  293 (426)
T ss_dssp             -------------------STTCCCCTTCHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHTTCCCCCHHHHHHHHHHHH
T ss_pred             -------------------cccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHhhccccccccHHHHHHHHHH
Confidence                               0123699999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcccccccc
Q 015243          390 IEAIKVLLKDTDKYRCGS  407 (410)
Q Consensus       390 ~e~~k~~~~~~~~~r~~~  407 (410)
                      +|++|++.+.....+|.|
T Consensus       294 ~E~iK~lt~~~~p~~n~~  311 (426)
T d1yovb1         294 TEVFKIATSAYIPLNNYL  311 (426)
T ss_dssp             HHHHHHHHCSSCCCCSEE
T ss_pred             HHHHHHHhcCCccccceE
Confidence            999999998654444433

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6e-37  Score=288.06  Aligned_cols=191  Identities=32%  Similarity=0.518  Sum_probs=161.1

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      +|+++|+||++++|+|+|+||+||+++++|+++|||+|+|+|+|.||.|||+||+||+.+|+|++|+++++++++++||+
T Consensus        20 ~g~~~Q~kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~   99 (247)
T d1jw9b_          20 FDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPH   99 (247)
T ss_dssp             THHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTT
T ss_pred             CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEE-eCCCCccccccCCC
Q 015243           82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVH-VKGKTECYECQPKP  160 (410)
Q Consensus        82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~-~~~~t~c~~C~~~~  160 (410)
                      ++|+.+...++.. ....++..+|+|++++|+.++|.+++++|+++++|++.++..|+.|++.++ .++.++|+.|....
T Consensus       100 ~~i~~~~~~~~~~-~~~~~~~~~divid~~d~~~~~~~in~~~~~~~ip~i~g~~~~~~g~~~~~~~~~~~~c~~c~~~~  178 (247)
T d1jw9b_         100 IAITPVNALLDDA-ELAALIAEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFTYQDGEPCYRCLSRL  178 (247)
T ss_dssp             SEEEEECSCCCHH-HHHHHHHTSSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEEEBTEEEEEEECCCTTCCCTHHHHTT
T ss_pred             cchhhhhhhhhhc-cccccccccceeeeccchhhhhhhHHHHHHHhCCCcccccccccccceEEEeecCCcccccccccc
Confidence            9999999888643 345678899999999999999999999999999999999999999999887 57889999999776


Q ss_pred             CCCCCCceeeccC--CCcchHHHHHHHHHHHHHHhC
Q 015243          161 APKTYPVCTITST--PSKFVHCIVWAKDLLFAKLFG  194 (410)
Q Consensus       161 ~~~~~p~cti~~~--p~~~~h~i~~a~~~~f~~~f~  194 (410)
                      .+...+.|.-...  |.........|.+ ....+.+
T Consensus       179 ~~~~~~~~~~~g~~~p~~~~v~~~~a~e-~ik~l~g  213 (247)
T d1jw9b_         179 FGENALTCVEAGVMAPLIGVIGSLQAME-AIKMLAG  213 (247)
T ss_dssp             CCC-------CCBCHHHHHHHHHHHHHH-HHHHHHT
T ss_pred             cccccCCcccCCcccccchhHHHHHHHH-HHHHHhc
Confidence            6665555543332  1112233345666 4666655

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.8e-36  Score=308.08  Aligned_cols=156  Identities=22%  Similarity=0.375  Sum_probs=142.8

Q ss_pred             CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243            2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ   81 (410)
Q Consensus         2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~   81 (410)
                      +|+++|++|++++|+|||+||+|||++|||+++|||+|+|+|+|.|+.+||+|||+|+.+|+|++|+++++++|+++||+
T Consensus        15 wG~~gQ~~L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~   94 (529)
T d1yova1          15 WGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSD   94 (529)
T ss_dssp             HHHHHHHHHHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTT
T ss_pred             hhHHHHHHHhCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEccCCCCC-cchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccC
Q 015243           82 MSITAHHANVKDP-KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQP  158 (410)
Q Consensus        82 v~i~~~~~~i~~~-~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~  158 (410)
                      ++++.+...+.+. ..+.+|+.++|+||++.|+.+.+..++++|+++++|+|.+++.|+.|+++++.|. ..+.++.+
T Consensus        95 v~i~~~~~~~~~~~~~~~~~~~~~dvVv~~~~~~~~~~~l~~~c~~~~ip~i~~~~~G~~G~v~~~~~~-~~~~e~~p  171 (529)
T d1yova1          95 VSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKE-HPVIESHP  171 (529)
T ss_dssp             SBCCEESSCHHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHHTCCEEEEEEETTEEEEEEECSC-EEESCCCC
T ss_pred             CcEEEEcCCchhhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCCEEEEEEEeCC-ceEEecCC
Confidence            9998887665321 2245789999999999999999999999999999999999999999999999986 44555443

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.94  E-value=2.4e-05  Score=62.19  Aligned_cols=93  Identities=11%  Similarity=0.125  Sum_probs=68.5

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      .|++++|+|||.|.+|..-++.|...|.. +++++.+.-                     ....+.+.+  .  .++...
T Consensus         9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga~-v~v~~~~~~---------------------~~~~~~~~~--~--~i~~~~   62 (113)
T d1pjqa1           9 QLRDRDCLIVGGGDVAERKARLLLEAGAR-LTVNALTFI---------------------PQFTVWANE--G--MLTLVE   62 (113)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBE-EEEEESSCC---------------------HHHHHHHTT--T--SCEEEE
T ss_pred             EeCCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEeccCC---------------------hHHHHHHhc--C--Cceeec
Confidence            36789999999999999999999999964 888875431                     111222211  2  333333


Q ss_pred             cCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEE
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLV  132 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i  132 (410)
                      ..+     ....+.++++|+.|+++.+....+.+.|+..++|+=
T Consensus        63 ~~~-----~~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~ilVN  101 (113)
T d1pjqa1          63 GPF-----DETLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCN  101 (113)
T ss_dssp             SSC-----CGGGGTTCSEEEECCSCHHHHHHHHHHHHHTTCEEE
T ss_pred             cCC-----CHHHhCCCcEEeecCCCHHHHHHHHHHHHHcCCEEE
Confidence            333     335578999999999999998899999999999754

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=3.6e-05  Score=66.41  Aligned_cols=84  Identities=21%  Similarity=0.322  Sum_probs=56.2

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      +++++|+|+|+||.|-.++..|...|+++|+|++.+.   +             --.|+..+++++..-.+.. +..  .
T Consensus        16 l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~---~-------------~~~~~~~l~~~~~~~~~~~-~~~--~   76 (182)
T d1vi2a1          16 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD---E-------------FFDKALAFAQRVNENTDCV-VTV--T   76 (182)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS---T-------------THHHHHHHHHHHHHHSSCE-EEE--E
T ss_pred             cCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccch---H-------------HHHHHHHHHHHHHhhcCcc-eEe--e
Confidence            6788999999999999999999999999999987321   0             1134555566665554432 222  1


Q ss_pred             CCCCCcchHhhhccCcEEEEccC
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                      .+.+.....+.+.++|+||+|+.
T Consensus        77 ~~~~~~~~~~~~~~~diiIN~Tp   99 (182)
T d1vi2a1          77 DLADQQAFAEALASADILTNGTK   99 (182)
T ss_dssp             ETTCHHHHHHHHHTCSEEEECSS
T ss_pred             ecccccchhhhhcccceeccccC
Confidence            22221112344678999999974

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.42  E-value=0.00021  Score=57.87  Aligned_cols=93  Identities=16%  Similarity=0.198  Sum_probs=64.0

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~   92 (410)
                      ++|+|+|+|.+|..+++.|...|.. ++++|.|.                   .+++-+++    ..   .+..+.++.+
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~-v~vid~d~-------------------~~~~~~~~----~~---~~~vi~Gd~~   53 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHD-IVLIDIDK-------------------DICKKASA----EI---DALVINGDCT   53 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE-EEEEESCH-------------------HHHHHHHH----HC---SSEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCC-cceecCCh-------------------hhhhhhhh----hh---hhhhccCccc
Confidence            5899999999999999999999954 89998643                   12222222    11   2234455554


Q ss_pred             CCc-chHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEE
Q 015243           93 DPK-FNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLV  132 (410)
Q Consensus        93 ~~~-~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i  132 (410)
                      +.. +....++.+|.++.++++.+....+...++.++.+-+
T Consensus        54 ~~~~l~~~~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~i   94 (132)
T d1lssa_          54 KIKTLEDAGIEDADMYIAVTGKEEVNLMSSLLAKSYGINKT   94 (132)
T ss_dssp             SHHHHHHTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCE
T ss_pred             chhhhhhcChhhhhhhcccCCcHHHHHHHHHHHHHcCCceE
Confidence            332 2223367899999999998888888888888776533

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.35  E-value=0.00019  Score=60.54  Aligned_cols=92  Identities=18%  Similarity=0.248  Sum_probs=62.4

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      .|.+++|+|||+|++|..++++|...|+++++++.          |.         ..|++.+++.+   +  .++..  
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~n----------Rt---------~~ka~~l~~~~---~--~~~~~--   74 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVAN----------RT---------YERAVELARDL---G--GEAVR--   74 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEEC----------SS---------HHHHHHHHHHH---T--CEECC--
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEc----------Cc---------HHHHHHHHHhh---h--ccccc--
Confidence            46899999999999999999999999999999964          22         24666655543   2  22221  


Q ss_pred             cCCCCCcchHhhhccCcEEEEccCChH---HHHHHHHHHHHC--CCcE
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLDNLD---ARRHVNRLCLAA--DVPL  131 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~---~r~~i~~~c~~~--~~p~  131 (410)
                        +.   .-.+.+.++|+||.|+....   .+..+.......  +.|+
T Consensus        75 --~~---~~~~~l~~~Divi~atss~~~ii~~~~i~~~~~~r~~~~~~  117 (159)
T d1gpja2          75 --FD---ELVDHLARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPI  117 (159)
T ss_dssp             --GG---GHHHHHHTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCE
T ss_pred             --ch---hHHHHhccCCEEEEecCCCCccccHhhhHHHHHhcccCCCe
Confidence              11   12356789999999986543   244555544432  4554

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.29  E-value=3.2e-05  Score=64.45  Aligned_cols=120  Identities=14%  Similarity=0.257  Sum_probs=64.9

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccC-cccCccccCCCCCCCCchHHHHHHHHHHh-hCC--CCeE
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE-VSNLNRQFLFRQSHVGQSKAKVARDAVLK-FRP--QMSI   84 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve-~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~-~np--~v~i   84 (410)
                      +|++++|+|||.|.+|.+-++.|..+|. ++++++++.-+ ..-+..++.  .........+.-...+.+ ..+  .-.+
T Consensus        10 ~l~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVvap~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (150)
T d1kyqa1          10 QLKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPDLHKSIIPKFGKFI--QNKDQPDYREDAKRFINPNWDPTKNEIY   86 (150)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEEEECTTHHHHHCGGG--C-----------CEEECTTCCTTSCCCS
T ss_pred             eeCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCHHHHHHHHhcc--chhhhhhhhhhhhhhcchhhhhccccce
Confidence            4789999999999999999999999995 79999766422 111111110  000000000000000000 000  0122


Q ss_pred             EEEccCCCCCcc-hHhhhccCcEEEEccCChHHHHHHHHHHHHC---CCcE
Q 015243           85 TAHHANVKDPKF-NVEFFKQFNVVLNGLDNLDARRHVNRLCLAA---DVPL  131 (410)
Q Consensus        85 ~~~~~~i~~~~~-~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~---~~p~  131 (410)
                      +.....+..... .......+++|+.|+++.+....+.+.|+..   ++|+
T Consensus        87 ~~i~~~~~~~~l~~~~~~~~~~lVi~at~d~~~n~~i~~~a~~~~~~~i~V  137 (150)
T d1kyqa1          87 EYIRSDFKDEYLDLENENDAWYIIMTCIPDHPESARIYHLCKERFGKQQLV  137 (150)
T ss_dssp             EEECSSCCGGGGCCSSTTCCEEEEEECCSCHHHHHHHHHHHHHHHCTTSEE
T ss_pred             EEEecccchhhhcccccccceEEEEeecCCHHHHHHHHHHHHHhccCCCEE
Confidence            333333321111 1122457899999999999888888888763   5543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.24  E-value=0.00058  Score=57.66  Aligned_cols=92  Identities=20%  Similarity=0.185  Sum_probs=58.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHH--HhhCCCCeEEEEcc
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAV--LKFRPQMSITAHHA   89 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l--~~~np~v~i~~~~~   89 (410)
                      +++|.|+|+|.+|+.++..|++.|. .++++|.+.                   .+.+.+.+.-  ....|..+......
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~   60 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDA-------------------QRIKEIQDRGAIIAEGPGLAGTAHPD   60 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH-------------------HHHHHHHHHTSEEEESSSCCEEECCS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHcCCCchhhhhhhhhhhhh
Confidence            5799999999999999999999996 688887432                   2322222210  11123333333222


Q ss_pred             CCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHH
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL  125 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~  125 (410)
                      ..+.  ...+.++++|+||.|+.....+..+.++..
T Consensus        61 ~~~~--~~~e~~~~aD~iii~v~~~~~~~~~~~i~~   94 (184)
T d1bg6a2          61 LLTS--DIGLAVKDADVILIVVPAIHHASIAANIAS   94 (184)
T ss_dssp             EEES--CHHHHHTTCSEEEECSCGGGHHHHHHHHGG
T ss_pred             hhhh--hhHhHhcCCCEEEEEEchhHHHHHHHHhhh
Confidence            2221  135668899999999987777666666543

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.15  E-value=0.0006  Score=57.00  Aligned_cols=97  Identities=16%  Similarity=0.109  Sum_probs=62.8

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      ..++|+|+|+|.+|..++++|+..|. +++++|.+.                   .|++.+    .+-.+...+.  ...
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr~~-------------------~~a~~l----~~~~~~~~~~--~~~   54 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTL-------------------ESAKKL----SAGVQHSTPI--SLD   54 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESCH-------------------HHHHHH----HTTCTTEEEE--ECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCh-------------------HHHHHH----Hhcccccccc--ccc
Confidence            36899999999999999999999998 699998332                   244433    3333333332  222


Q ss_pred             CCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEe
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVES  134 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~  134 (410)
                      ..........+...|+++.++.... ...+...|.+.+..+++.
T Consensus        55 ~~~~~~~~~~i~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~   97 (182)
T d1e5qa1          55 VNDDAALDAEVAKHDLVISLIPYTF-HATVIKSAIRQKKHVVTT   97 (182)
T ss_dssp             TTCHHHHHHHHTTSSEEEECSCGGG-HHHHHHHHHHHTCEEECS
T ss_pred             ccchhhhHhhhhccceeEeeccchh-hhHHHHHHHhhccceeec
Confidence            2222334456788899998876543 344455666666666654

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.13  E-value=0.0036  Score=50.06  Aligned_cols=95  Identities=19%  Similarity=0.296  Sum_probs=60.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~   92 (410)
                      ++++|+|+|.+|..+++.|...|.. ++++|.|.-..                       +.+++..  .  ..+..+.+
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~-vvvid~d~~~~-----------------------~~~~~~~--~--~~~~gd~~   52 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHE-VLAVDINEEKV-----------------------NAYASYA--T--HAVIANAT   52 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCC-CEEEESCHHHH-----------------------HHTTTTC--S--EEEECCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCe-EEEecCcHHHH-----------------------HHHHHhC--C--cceeeecc
Confidence            5799999999999999999999975 88888654221                       1122211  1  22334444


Q ss_pred             CCc-chHhhhccCcEEEEccCC-hHHHHHHHHHHHHCCCcEEEec
Q 015243           93 DPK-FNVEFFKQFNVVLNGLDN-LDARRHVNRLCLAADVPLVESG  135 (410)
Q Consensus        93 ~~~-~~~~~~~~~DvVi~a~Dn-~~~r~~i~~~c~~~~~p~i~~g  135 (410)
                      +.. +...-+.++|.||.++++ ......+......++.+-+-+.
T Consensus        53 ~~~~l~~a~i~~a~~vi~~~~~~~~~~~~~~~~~~~~~~~~iiar   97 (134)
T d2hmva1          53 EENELLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVK   97 (134)
T ss_dssp             CTTHHHHHTGGGCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             cchhhhccCCccccEEEEEcCchHHhHHHHHHHHHHcCCCcEEee
Confidence            332 223347889999888765 4555555556666676665554

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.0016  Score=49.24  Aligned_cols=90  Identities=13%  Similarity=0.242  Sum_probs=58.1

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      ++++||+|+|+|..|..+++.|...|.. +++.|...-. ..  +.                     ++.....+..  .
T Consensus         3 ~~~K~v~ViGlG~sG~s~a~~L~~~g~~-v~~~D~~~~~-~~--~~---------------------~~~~~~~~~~--~   55 (93)
T d2jfga1           3 YQGKNVVIIGLGLTGLSCVDFFLARGVT-PRVMDTRMTP-PG--LD---------------------KLPEAVERHT--G   55 (93)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCC-CEEEESSSSC-TT--GG---------------------GSCTTSCEEE--S
T ss_pred             cCCCEEEEEeECHHHHHHHHHHHHCCCE-EEEeeCCcCc-hh--HH---------------------HHhhccceee--c
Confidence            5789999999999999999999999955 8888853211 00  00                     1111222211  1


Q ss_pred             CCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEE
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLV  132 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i  132 (410)
                           .+....+.++|+||.+.. .+...-+-+.++++++|+|
T Consensus        56 -----~~~~~~~~~~d~vi~SPG-i~~~~~~~~~a~~~gi~ii   92 (93)
T d2jfga1          56 -----SLNDEWLMAADLIVASPG-IALAHPSLSAAADAGIEIV   92 (93)
T ss_dssp             -----BCCHHHHHHCSEEEECTT-SCTTSHHHHHHHHTTCEEE
T ss_pred             -----ccchhhhccCCEEEECCC-CCCCCHHHHHHHHcCCCeE
Confidence                 123456789999999754 2333345556778899876

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.0018  Score=58.40  Aligned_cols=85  Identities=12%  Similarity=0.188  Sum_probs=63.5

Q ss_pred             HHHHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeE
Q 015243            6 QLEAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSI   84 (410)
Q Consensus         6 ~q~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i   84 (410)
                      ++++|+++.++|.| .+|||.++++.|++.|. ++.++|.+                   ..|.+.+++.+++..+..++
T Consensus         4 ~M~~lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~-------------------~~~l~~~~~~l~~~~~~~~~   63 (257)
T d1xg5a_           4 GMERWRDRLALVTGASGGIGAAVARALVQQGL-KVVGCART-------------------VGNIEELAAECKSAGYPGTL   63 (257)
T ss_dssp             TCGGGTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTCSSEE
T ss_pred             CCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCCCceE
Confidence            35679999999998 67999999999999997 58887632                   35778888889988877788


Q ss_pred             EEEccCCCCCcchHh-------hhccCcEEEEc
Q 015243           85 TAHHANVKDPKFNVE-------FFKQFNVVLNG  110 (410)
Q Consensus        85 ~~~~~~i~~~~~~~~-------~~~~~DvVi~a  110 (410)
                      ..+..++++......       -+.+.|++|++
T Consensus        64 ~~~~~Dls~~~~v~~~v~~~~~~~g~iD~lVnn   96 (257)
T d1xg5a_          64 IPYRCDLSNEEDILSMFSAIRSQHSGVDICINN   96 (257)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHCCCSEEEEC
T ss_pred             EEEEccCCCHHHHHHHHHHHHHhcCCCCEEEec
Confidence            888888865321111       13456766664

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.75  E-value=0.00077  Score=56.30  Aligned_cols=33  Identities=33%  Similarity=0.473  Sum_probs=30.9

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      ++.||.|||+|.+|+.++..|++.|+.++.|+|
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D   38 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYD   38 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEE
Confidence            468999999999999999999999999999998

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.0014  Score=55.38  Aligned_cols=73  Identities=22%  Similarity=0.311  Sum_probs=51.4

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      +.+++|+|+|+||.+..++..|...|+ +|+|++          |.         ..|++.+++.+.+..+   +.... 
T Consensus        16 ~~~k~vlIlGaGGaarai~~al~~~g~-~i~I~n----------Rt---------~~ka~~l~~~~~~~~~---~~~~~-   71 (170)
T d1nyta1          16 RPGLRILLIGAGGASRGVLLPLLSLDC-AVTITN----------RT---------VSRAEELAKLFAHTGS---IQALS-   71 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEC----------SS---------HHHHHHHHHHTGGGSS---EEECC-
T ss_pred             CCCCEEEEECCcHHHHHHHHHhcccce-EEEecc----------ch---------HHHHHHHHHHHhhccc---ccccc-
Confidence            467899999999999999999999998 588864          22         2567777766665542   32221 


Q ss_pred             CCCCCcchHhhhccCcEEEEccC
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                       .     +......+|+||+|+.
T Consensus        72 -~-----~~~~~~~~dliIN~Tp   88 (170)
T d1nyta1          72 -M-----DELEGHEFDLIINATS   88 (170)
T ss_dssp             -S-----GGGTTCCCSEEEECCS
T ss_pred             -c-----ccccccccceeecccc
Confidence             1     1122357899999974

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.51  E-value=0.0015  Score=56.10  Aligned_cols=162  Identities=12%  Similarity=0.111  Sum_probs=91.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCccc----CccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSN----LNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sN----L~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      +||.|||+|-+|+.++-.+++.|.. ++++|.|.=....    +.+.+ -....-|+...+...+.+.++.      .. 
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~-V~l~D~~~~~l~~~~~~i~~~l-~~~~~~~~~~~~~~~~~~~~i~------~~-   75 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTP-ILMKDINEHGIEQGLAEAAKLL-VGRVDKGRMTPAKMAEVLNGIR------PT-   75 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCC-EEEECSSHHHHHHHHHHHHHHH-HHHHTTTSSCHHHHHHHHHHEE------EE-
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCe-EEEEECCHHHHhhhhhhhhhhH-Hhhhcccccchhhhhhhhceee------cc-
Confidence            4799999999999999999999976 8999976422111    00000 0001112222222233333221      11 


Q ss_pred             cCCCCCcchHhhhccCcEEEEcc-CChHHHHHHHHHHHHCCC--cEEEecccCccce-EEEEeCCCCccccccCCCCCCC
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGFLGQ-VTVHVKGKTECYECQPKPAPKT  164 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~-Dn~~~r~~i~~~c~~~~~--p~i~~g~~G~~G~-v~~~~~~~t~c~~C~~~~~~~~  164 (410)
                      ..       .+-+.++|+|+.|. .+.+.+..+-....+.-.  ..+.+.+.+..-. +.-......-+...++-.++..
T Consensus        76 ~~-------~~~~~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~~~~~p~r~~g~Hf~nP~~~  148 (186)
T d1wdka3          76 LS-------YGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHM  148 (186)
T ss_dssp             SS-------STTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTT
T ss_pred             cc-------cccccccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHHhccCchheEeeccccCccc
Confidence            11       12367899999975 567777665554444322  3444444443311 0000122223444455556677


Q ss_pred             CCceeeccCCCcchHHHHHHHHHHHHH
Q 015243          165 YPVCTITSTPSKFVHCIVWAKDLLFAK  191 (410)
Q Consensus       165 ~p~cti~~~p~~~~h~i~~a~~~~f~~  191 (410)
                      .|.+.+...+.+....+..+.+ +++.
T Consensus       149 ~~lVEiv~~~~T~~~~~~~~~~-~~~~  174 (186)
T d1wdka3         149 MPLVEVIRGEKSSDLAVATTVA-YAKK  174 (186)
T ss_dssp             CCEEEEEECSSCCHHHHHHHHH-HHHH
T ss_pred             CCeEEECCCCCCCHHHHHHHHH-HHHH
Confidence            8899999889999999998887 3443

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.51  E-value=0.00044  Score=58.86  Aligned_cols=35  Identities=23%  Similarity=0.347  Sum_probs=31.2

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .+.+|+|+|+|++|...+..+...|..++..+|.+
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~   61 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR   61 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccch
Confidence            36789999999999999999999999999999843

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.0044  Score=51.04  Aligned_cols=94  Identities=17%  Similarity=0.231  Sum_probs=58.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~   92 (410)
                      +||+|+|+|++|+.++..|++.|. .++++|.+.-....+..                       ...+.......  +.
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~-----------------------~~~~~~~~~~~--~~   54 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSVNL-----------------------VETDGSIFNES--LT   54 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEEEE-----------------------ECTTSCEEEEE--EE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHhhhhcc-----------------------ccCCccccccc--cc
Confidence            589999999999999999999997 58898865432222111                       01111111110  10


Q ss_pred             CCcchHhhhccCcEEEEccCChHHHHHHHHHHHHC--CCcEEEe
Q 015243           93 DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA--DVPLVES  134 (410)
Q Consensus        93 ~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~--~~p~i~~  134 (410)
                        ....+....+|+|+.++-.......+..+....  +.+++..
T Consensus        55 --~~~~~~~~~~D~iii~vka~~~~~~~~~l~~~~~~~~~Iv~~   96 (167)
T d1ks9a2          55 --ANDPDFLATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLI   96 (167)
T ss_dssp             --ESCHHHHHTCSEEEECSCGGGHHHHHHHHHTTSCTTSCEEEE
T ss_pred             --cchhhhhcccceEEEeecccchHHHHHhhccccCcccEEeec
Confidence              012355678999999998877777666665432  3445543

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.40  E-value=0.0066  Score=50.45  Aligned_cols=115  Identities=20%  Similarity=0.310  Sum_probs=64.8

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC--
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN--   90 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~--   90 (410)
                      ++|.+||+|-+|+.++++|++.|. ++.+.|.+.-....+.-.        |........+.++.  -++-+......  
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~-~v~~~d~~~~~~~~~~~~--------~~~~~~~~~e~~~~--~diii~~v~~~~~   70 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGLVAA--------GASAARSARDAVQG--ADVVISMLPASQH   70 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHT--------TCEECSSHHHHHTS--CSEEEECCSCHHH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCC-eEEEEECchhhhhhhhhh--------hccccchhhhhccc--cCeeeecccchhh
Confidence            479999999999999999999997 588877543222221100        10001111222221  11112211111  


Q ss_pred             ---C-CCCcchHhhhccCcEEEEc-cCChHHHHHHHHHHHHCCCcEEEecccC
Q 015243           91 ---V-KDPKFNVEFFKQFNVVLNG-LDNLDARRHVNRLCLAADVPLVESGTTG  138 (410)
Q Consensus        91 ---i-~~~~~~~~~~~~~DvVi~a-~Dn~~~r~~i~~~c~~~~~p~i~~g~~G  138 (410)
                         + ....-....+..=++||++ +-+++.-..+.+.+.+.++.++++.+.|
T Consensus        71 ~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv~G  123 (162)
T d3cuma2          71 VEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSG  123 (162)
T ss_dssp             HHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEES
T ss_pred             HHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEeccccc
Confidence               0 0000011233445678875 4456777888889999999999988776

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=96.40  E-value=0.0081  Score=49.35  Aligned_cols=32  Identities=28%  Similarity=0.538  Sum_probs=28.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCC-CcEEEEe
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGF-QDIHIID   43 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD   43 (410)
                      .+||.|||+|.+|+.++-.|+..|. +++.|+|
T Consensus         1 ~kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~D   33 (146)
T d1hyha1           1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFID   33 (146)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEe
Confidence            3789999999999999999999995 6899987

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.39  E-value=0.0017  Score=54.39  Aligned_cols=36  Identities=22%  Similarity=0.584  Sum_probs=32.1

Q ss_pred             HHHhCCcEEEECCcHHHHHHHHHHHHhCCC-cEEEEe
Q 015243            8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQ-DIHIID   43 (410)
Q Consensus         8 ~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~-~i~liD   43 (410)
                      .++.+.||.|||+|.+|+.++..|+..|.. +|.|+|
T Consensus        15 ~~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D   51 (159)
T d2ldxa1          15 DKLSRCKITVVGVGDVGMACAISILLKGLADELALVD   51 (159)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEEC
T ss_pred             ccCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEe
Confidence            356788999999999999999999999985 699987

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=96.36  E-value=0.00071  Score=57.47  Aligned_cols=125  Identities=15%  Similarity=0.182  Sum_probs=67.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      .++|.+||+|.+|..++++|++.|.. +++.|.+.=....+..+..-.....|-...+...+.+.  .++.-+......-
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~-V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~ii~~~~~~~   78 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFV-VCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLK--KPRRIILLVKAGQ   78 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBC--SSCEEEECSCTTH
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCe-EEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhc--ccceEEEecCchH
Confidence            57899999999999999999999985 78877544222222222111111122222222222211  1111121111100


Q ss_pred             -CCCcc--hHhhhccCcEEEEc-cCChHHHHHHHHHHHHCCCcEEEecccCc
Q 015243           92 -KDPKF--NVEFFKQFNVVLNG-LDNLDARRHVNRLCLAADVPLVESGTTGF  139 (410)
Q Consensus        92 -~~~~~--~~~~~~~~DvVi~a-~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~  139 (410)
                       .....  ....++.-++||++ +-+++.-..+.+.+.+.++.++++...|.
T Consensus        79 ~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapvsGg  130 (176)
T d2pgda2          79 AVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGG  130 (176)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESH
T ss_pred             HHHHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceeccccccC
Confidence             00000  01233455788885 44566666778888899999999877753

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.33  E-value=0.0033  Score=53.12  Aligned_cols=73  Identities=25%  Similarity=0.336  Sum_probs=52.9

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      +.+++|+|+|+||.|-.++..|.. |..+|+|+.          |.         ..|++.+++.+....   ++.....
T Consensus        16 ~~~k~vlIlGaGGaarai~~aL~~-~~~~i~I~n----------R~---------~~~a~~l~~~~~~~~---~~~~~~~   72 (171)
T d1p77a1          16 RPNQHVLILGAGGATKGVLLPLLQ-AQQNIVLAN----------RT---------FSKTKELAERFQPYG---NIQAVSM   72 (171)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHH-TTCEEEEEE----------SS---------HHHHHHHHHHHGGGS---CEEEEEG
T ss_pred             CCCCEEEEECCcHHHHHHHHHHcc-cCceeeecc----------ch---------HHHHHHHHHHHhhcc---ccchhhh
Confidence            567899999999999999999986 668899964          33         257888888776554   3333322


Q ss_pred             CCCCCcchHhhhccCcEEEEccC
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                      .-       .-..++|+||+|+.
T Consensus        73 ~~-------~~~~~~diiIN~tp   88 (171)
T d1p77a1          73 DS-------IPLQTYDLVINATS   88 (171)
T ss_dssp             GG-------CCCSCCSEEEECCC
T ss_pred             cc-------ccccccceeeeccc
Confidence            21       12468999999975

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.30  E-value=0.0084  Score=49.66  Aligned_cols=89  Identities=12%  Similarity=0.139  Sum_probs=54.2

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~   92 (410)
                      +||.|||+|.+|+.+++.|...|. +++.+|.+.                   .+.+    .+++... +.  ....   
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~-------------------~~~~----~a~~~~~-~~--~~~~---   50 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQ-------------------STCE----KAVERQL-VD--EAGQ---   50 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH-------------------HHHH----HHHHTTS-CS--EEES---
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-EEEEEECCc-------------------hHHH----HHHHhhc-cc--eeee---
Confidence            479999999999999999999997 477766432                   1122    2222221 10  0111   


Q ss_pred             CCcchHhhhccCcEEEEccCChHHHHHHHHHHHH--CCCcEEEec
Q 015243           93 DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA--ADVPLVESG  135 (410)
Q Consensus        93 ~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~--~~~p~i~~g  135 (410)
                          +.+.++++|+||.|+........++++...  .+..+++.+
T Consensus        51 ----~~~~~~~~DiIilavp~~~~~~vl~~l~~~l~~~~iv~~~~   91 (165)
T d2f1ka2          51 ----DLSLLQTAKIIFLCTPIQLILPTLEKLIPHLSPTAIVTDVA   91 (165)
T ss_dssp             ----CGGGGTTCSEEEECSCHHHHHHHHHHHGGGSCTTCEEEECC
T ss_pred             ----ecccccccccccccCcHhhhhhhhhhhhhhcccccceeecc
Confidence                124578999999999755556666665433  233444544

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.29  E-value=0.0076  Score=49.75  Aligned_cols=32  Identities=28%  Similarity=0.528  Sum_probs=30.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      +.||.|||+|.+|+.++-.|++.|+.++.|+|
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~D   34 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFD   34 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEe
Confidence            57999999999999999999999999999998

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.27  E-value=0.0025  Score=54.62  Aligned_cols=82  Identities=24%  Similarity=0.290  Sum_probs=55.4

Q ss_pred             HHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEE
Q 015243            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (410)
Q Consensus         8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~   86 (410)
                      ..|++++|+|.| .||+|.++++.|+..|. +++++|.+.                   .|.+.+++.+.+.. .+.+. 
T Consensus        19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~-~~~~~-   76 (191)
T d1luaa1          19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKL-------------------DKAQAAADSVNKRF-KVNVT-   76 (191)
T ss_dssp             SCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSH-------------------HHHHHHHHHHHHHH-TCCCE-
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccch-------------------HHHHHHHHHHHhcc-chhhh-
Confidence            357899999999 69999999999999996 688887332                   34555566655432 22222 


Q ss_pred             EccCCCCCcchHhhhccCcEEEEccC
Q 015243           87 HHANVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                       ..++.+.....+.+.+.|+||++..
T Consensus        77 -~~d~~~~~~~~~~~~~iDilin~Ag  101 (191)
T d1luaa1          77 -AAETADDASRAEAVKGAHFVFTAGA  101 (191)
T ss_dssp             -EEECCSHHHHHHHTTTCSEEEECCC
T ss_pred             -hhhcccHHHHHHHhcCcCeeeecCc
Confidence             2223322334567889999999753

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.16  E-value=0.0089  Score=48.67  Aligned_cols=31  Identities=26%  Similarity=0.529  Sum_probs=28.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC-CcEEEEe
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGF-QDIHIID   43 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD   43 (410)
                      .||.|||+|.+|+.++-.|+..|. .++.|+|
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~D   32 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLD   32 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEec
Confidence            479999999999999999999996 6899998

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.0024  Score=55.08  Aligned_cols=166  Identities=12%  Similarity=0.141  Sum_probs=88.1

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCcc---ccC---CCCCCCCchHHHHHHHHHHhhCCCCeEEE
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNR---QFL---FRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~R---q~l---f~~~diG~~Ka~~a~~~l~~~np~v~i~~   86 (410)
                      +||.|||+|-+|+.++..+++.|.. ++++|.|.=.......   +.+   ....-...+.  +..+......-  ++..
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~-V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~--~~~~~~~~~l~--~i~~   79 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHT-VVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPK--AGDEFVEKTLS--TIAT   79 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHH--HHHHHHHHHHH--TEEE
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCc-EEEEECChHHHHHHHhhHHHHHHHHHHhhhhccch--hhHHHHHHHHh--hccc
Confidence            6899999999999999999999975 8899966532221110   000   0000000000  00111111100  1211


Q ss_pred             EccCCCCCcchHhhhccCcEEEEcc-CChHHHHHHHHHHHHC-C-CcEEEecccCccc-eEEEEeCCCCccccccCCCCC
Q 015243           87 HHANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAA-D-VPLVESGTTGFLG-QVTVHVKGKTECYECQPKPAP  162 (410)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~DvVi~a~-Dn~~~r~~i~~~c~~~-~-~p~i~~g~~G~~G-~v~~~~~~~t~c~~C~~~~~~  162 (410)
                      ..       ...+-+.++|+|+.|. .+.+.+..+-+...+. . -..+.+.+.+..- .+.-......-+...++-.++
T Consensus        80 ~~-------d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~HffnP~  152 (192)
T d1f0ya2          80 ST-------DAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPV  152 (192)
T ss_dssp             ES-------CHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSST
T ss_pred             cc-------hhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhhhhccCHhHEEeecccccc
Confidence            11       1234578899999975 6677666554443332 1 2344454443321 000001111222333344455


Q ss_pred             CCCCceeeccCCCcchHHHHHHHHHHHHH
Q 015243          163 KTYPVCTITSTPSKFVHCIVWAKDLLFAK  191 (410)
Q Consensus       163 ~~~p~cti~~~p~~~~h~i~~a~~~~f~~  191 (410)
                      ...|...+...|.+....+..+.+ +++.
T Consensus       153 ~~~~lVEIv~g~~T~~~~i~~~~~-~~~~  180 (192)
T d1f0ya2         153 PVMKLVEVIKTPMTSQKTFESLVD-FSKA  180 (192)
T ss_dssp             TTCCEEEEECCTTCCHHHHHHHHH-HHHH
T ss_pred             CcccEEEEcCCCCCCHHHHHHHHH-HHHH
Confidence            677888998889998888999988 4544

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.15  E-value=0.0058  Score=51.08  Aligned_cols=35  Identities=17%  Similarity=0.457  Sum_probs=31.4

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCC-CcEEEEeC
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~   44 (410)
                      +.+.||.|||+|.+|+.++..|+..|. .+|.|+|-
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~   53 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDV   53 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            457899999999999999999999997 67999883

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0039  Score=52.20  Aligned_cols=33  Identities=36%  Similarity=0.529  Sum_probs=30.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ..+|+|+|+|++|.-.+..+...|..+++++|.
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~   59 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDL   59 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCceEEeccC
Confidence            568999999999999999999999999999983

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.10  E-value=0.0027  Score=53.54  Aligned_cols=35  Identities=31%  Similarity=0.457  Sum_probs=32.1

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ..+||+|||+|..|.+.|..|++.|...++|+|..
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~   37 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQ   37 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEec
Confidence            46899999999999999999999999889998853

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.09  E-value=0.014  Score=47.81  Aligned_cols=33  Identities=36%  Similarity=0.663  Sum_probs=30.0

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCC-CcEEEEe
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGF-QDIHIID   43 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD   43 (410)
                      .+.||.|||+|.+|+.++..|++.|. .++.|+|
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~D   38 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLID   38 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEe
Confidence            46789999999999999999999997 5799988

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.08  E-value=0.0086  Score=53.74  Aligned_cols=82  Identities=22%  Similarity=0.348  Sum_probs=59.0

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      ||+++.++|-| .+|||.++++.|+..|. ++.++|.                   ...+.+.+++.+.+..++.++..+
T Consensus         1 rl~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r-------------------~~~~l~~~~~~~~~~~~~~~~~~~   60 (258)
T d1iy8a_           1 RFTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDV-------------------SSEGLEASKAAVLETAPDAEVLTT   60 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES-------------------CHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC-------------------CHHHHHHHHHHHHhhCCCCeEEEE
Confidence            57888899987 67999999999999997 5888872                   234567777777777788888888


Q ss_pred             ccCCCCCcchHh-------hhccCcEEEEc
Q 015243           88 HANVKDPKFNVE-------FFKQFNVVLNG  110 (410)
Q Consensus        88 ~~~i~~~~~~~~-------~~~~~DvVi~a  110 (410)
                      ..++++...-..       -+.+.|++|++
T Consensus        61 ~~Dvt~~~~v~~~~~~~~~~~G~iDiLVnn   90 (258)
T d1iy8a_          61 VADVSDEAQVEAYVTATTERFGRIDGFFNN   90 (258)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCSEEEEC
T ss_pred             eccCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence            777754322211       23456776663

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.06  E-value=0.0078  Score=50.96  Aligned_cols=100  Identities=18%  Similarity=0.213  Sum_probs=56.1

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh--hCCCCeEEEEccC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK--FRPQMSITAHHAN   90 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~--~np~v~i~~~~~~   90 (410)
                      ++|.|+|+|+.|+.++..|+..|. +++|...+.               |      +...+.+++  .||..........
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~-~V~l~~r~~---------------~------~~~~~~i~~~~~~~~~~~~~~~~~   58 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGN-EVRIWGTEF---------------D------TEILKSISAGREHPRLGVKLNGVE   58 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCC-EEEEECCGG---------------G------HHHHHHHHTTCCBTTTTBCCCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-EEEEEEecc---------------c------HHHHHHHhhhhhhhhhcchhcccc
Confidence            589999999999999999999985 466652110               0      001112211  2222211111111


Q ss_pred             CCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHH-CCCcEEEe
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA-ADVPLVES  134 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~-~~~p~i~~  134 (410)
                      +.......+.++++|+|+.|+-....|..+.++... .+.+++.+
T Consensus        59 i~~~~~~~~~~~~ad~Ii~avps~~~~~~~~~l~~~l~~~~ii~~  103 (180)
T d1txga2          59 IFWPEQLEKCLENAEVVLLGVSTDGVLPVMSRILPYLKDQYIVLI  103 (180)
T ss_dssp             EECGGGHHHHHTTCSEEEECSCGGGHHHHHHHHTTTCCSCEEEEC
T ss_pred             ccccccHHHHHhccchhhcccchhhhHHHHHhhccccccceeccc
Confidence            111122345688999999999877777776665332 23344443

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.98  E-value=0.012  Score=48.10  Aligned_cols=76  Identities=24%  Similarity=0.354  Sum_probs=51.9

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCC-CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhh----CCCCeEEE
Q 015243           13 AKVLMVGA-GGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKF----RPQMSITA   86 (410)
Q Consensus        13 ~~VlvvG~-GgiG~ev~knLa~~Gv-~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~----np~v~i~~   86 (410)
                      .||.|+|+ |.+|+.++-.|+..|+ +++.|+|.+                 -+..|++..+.-+...    .+.+++..
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~-----------------~~~~~~~g~a~Dl~~~~~~~~~~~~~~~   63 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGRE-----------------HSINKLEGLREDIYDALAGTRSDANIYV   63 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECG-----------------GGHHHHHHHHHHHHHHHTTSCCCCEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccch-----------------hhhHhhhcccccchhcccccccCCcccc
Confidence            47999996 9999999999999996 799999832                 1224566555555542    33445544


Q ss_pred             EccCCCCCcchHhhhccCcEEEEcc
Q 015243           87 HHANVKDPKFNVEFFKQFNVVLNGL  111 (410)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~DvVi~a~  111 (410)
                      ....      +.+-++++|+||.+.
T Consensus        64 ~~~~------d~~~l~~aDvVVitA   82 (145)
T d1hyea1          64 ESDE------NLRIIDESDVVIITS   82 (145)
T ss_dssp             EETT------CGGGGTTCSEEEECC
T ss_pred             CCcc------hHHHhccceEEEEec
Confidence            3322      124468999999874

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.97  E-value=0.012  Score=48.06  Aligned_cols=31  Identities=42%  Similarity=0.560  Sum_probs=28.8

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCC-CcEEEEe
Q 015243           13 AKVLMVGA-GGIGCELLKTLALSGF-QDIHIID   43 (410)
Q Consensus        13 ~~VlvvG~-GgiG~ev~knLa~~Gv-~~i~liD   43 (410)
                      +||.|+|| |.+|+.++-.|+..|+ ++|.|+|
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiD   33 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYD   33 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEE
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEe
Confidence            58999996 9999999999999997 8999998

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.96  E-value=0.025  Score=47.50  Aligned_cols=33  Identities=27%  Similarity=0.511  Sum_probs=30.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +..|+|+|+||+|...+..+...|..+|..+|.
T Consensus        30 g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~   62 (176)
T d1d1ta2          30 GSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDL   62 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceEEEecC
Confidence            567999999999999999999999999999983

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.96  E-value=0.019  Score=46.64  Aligned_cols=31  Identities=32%  Similarity=0.628  Sum_probs=28.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC-CcEEEEe
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGF-QDIHIID   43 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD   43 (410)
                      .||.|||+|.+|+.++..|+..|. .+|.|+|
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~D   32 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLID   32 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEe
Confidence            489999999999999999999997 5799988

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.91  E-value=0.02  Score=47.41  Aligned_cols=32  Identities=41%  Similarity=0.600  Sum_probs=27.8

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCC-cEEEEeC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDM   44 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~-~i~liD~   44 (410)
                      ++|+|||+|-+|+.+++.|...|.. +|+.+|.
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~   34 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDI   34 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEEC
Confidence            3699999999999999999999974 6777773

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.89  E-value=0.0053  Score=51.67  Aligned_cols=122  Identities=12%  Similarity=0.155  Sum_probs=63.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCC----CCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ----SHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~----~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      +++|.|||+|.+|+.++++|+..|.. +.+.|.+.-....+........    ......    ....+........+...
T Consensus         1 ~MkIGvIGlG~MG~~ma~~L~~~G~~-V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~   75 (178)
T d1pgja2           1 SMDVGVVGLGVMGANLALNIAEKGFK-VAVFNRTYSKSEEFMKANASAPFAGNLKAFET----MEAFAASLKKPRKALIL   75 (178)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSHHHHHHHHHHTTTSTTGGGEEECSC----HHHHHHHBCSSCEEEEC
T ss_pred             CCEEEEEeehHHHHHHHHHHHHCCCe-EEEEECCHHHHHHHHHcCCccccccchhhhhh----hhHHHHhcccceEEEEe
Confidence            46899999999999999999999976 7777743322222211110000    000000    11111111111111111


Q ss_pred             ccCCC--CC--cchHhhhccCcEEEEc-cCChHHHHHHHHHHHHCCCcEEEecccC
Q 015243           88 HANVK--DP--KFNVEFFKQFNVVLNG-LDNLDARRHVNRLCLAADVPLVESGTTG  138 (410)
Q Consensus        88 ~~~i~--~~--~~~~~~~~~~DvVi~a-~Dn~~~r~~i~~~c~~~~~p~i~~g~~G  138 (410)
                      ...-.  ..  ......+..-++++++ +.+++.-..+.+.+...++-++++...|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g  131 (178)
T d1pgja2          76 VQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISG  131 (178)
T ss_dssp             CCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEES
T ss_pred             ecCcchhhhhhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccC
Confidence            10000  00  0111234555677774 4556666677778888889999987765

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.81  E-value=0.0051  Score=48.82  Aligned_cols=33  Identities=30%  Similarity=0.355  Sum_probs=29.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      ++++|||+|.+|+|+|..|.+.|. +++|+..+.
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~~   53 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGL-DVTVMVRSI   53 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCC-eEEEEEech
Confidence            589999999999999999999997 599987553

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.025  Score=48.18  Aligned_cols=100  Identities=14%  Similarity=0.130  Sum_probs=60.2

Q ss_pred             hCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      ..+||+|.| .|.+|..+++.|...|. ++++++.+.-....           .              ..+.  ++....
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~-~V~~~~R~~~~~~~-----------~--------------~~~~--~~~~~g   53 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPS-----------E--------------GPRP--AHVVVG   53 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCS-----------S--------------SCCC--SEEEES
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEcChhhccc-----------c--------------cccc--cccccc
Confidence            457899999 58899999999999996 58887643221100           0              0122  333455


Q ss_pred             CCCCCcchHhhhccCcEEEEccCCh----------HHHHHHHHHHHHCCCc-EEEecccC
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLDNL----------DARRHVNRLCLAADVP-LVESGTTG  138 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~Dn~----------~~r~~i~~~c~~~~~p-~i~~g~~G  138 (410)
                      ++.+...-...++++|+||.++...          .....+-+.+.+++++ +|..++.|
T Consensus        54 D~~d~~~l~~al~~~d~vi~~~g~~~~~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss~~  113 (205)
T d1hdoa_          54 DVLQAADVDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAF  113 (205)
T ss_dssp             CTTSHHHHHHHHTTCSEEEECCCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCGG
T ss_pred             cccchhhHHHHhcCCCEEEEEeccCCchhhhhhhHHHHHHHHHHHHhcCCCeEEEEeeee
Confidence            6654433345678899999876321          1222344456666664 56655444

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.72  E-value=0.0017  Score=54.79  Aligned_cols=34  Identities=24%  Similarity=0.373  Sum_probs=30.4

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .+.+|+|+|+|++|...+..+...|..++.++|.
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~   61 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI   61 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEES
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeecc
Confidence            3568999999999999999999999999999873

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=95.66  E-value=0.0047  Score=51.80  Aligned_cols=33  Identities=33%  Similarity=0.636  Sum_probs=30.9

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      ++++|+|+|+||.|..++..|...|+++|+|++
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~n   48 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYA   48 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEEC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEec
Confidence            578999999999999999999999999999964

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.64  E-value=0.027  Score=45.89  Aligned_cols=30  Identities=20%  Similarity=0.261  Sum_probs=25.1

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      .||.|||+|-+|+.++++|...|+. +++.|
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~-v~~~~   30 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVE-VVTSL   30 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCE-EEECC
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCe-EEEEc
Confidence            4799999999999999999999864 44433

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.61  E-value=0.0056  Score=48.54  Aligned_cols=56  Identities=21%  Similarity=0.322  Sum_probs=40.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhh
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKF   78 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~   78 (410)
                      .++|+|||.|.+|+|+|..|+..|. +++|++...-   =|.|+       .++.-++.+.+.+++.
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~~---~l~~~-------~~~~~~~~~~~~l~~~   85 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGV-HVSLVETQPR---LMSRA-------APATLADFVARYHAAQ   85 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSS---TTTTT-------SCHHHHHHHHHHHHTT
T ss_pred             CCeEEEECcchhHHHHHHHhhcccc-eEEEEeeccc---ccccc-------CCHHHHHHHHHHHHHC
Confidence            5799999999999999999999995 5999875321   12222       3444566667777665

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.60  E-value=0.021  Score=45.63  Aligned_cols=74  Identities=27%  Similarity=0.320  Sum_probs=51.7

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        13 ~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      .||.|+|+ |-.|..+.+.+...|..-+.-+|.+.                                             
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~---------------------------------------------   35 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNG---------------------------------------------   35 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTE---------------------------------------------
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCc---------------------------------------------
Confidence            47999996 99999999887766643332333111                                             


Q ss_pred             CCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCc
Q 015243           92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGF  139 (410)
Q Consensus        92 ~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~  139 (410)
                            .+.+..+|+||+-+ ++++-...-++|.++++|++-+ |.|+
T Consensus        36 ------~~~~~~~DVvIDFS-~p~~~~~~l~~~~~~~~p~ViG-TTG~   75 (128)
T d1vm6a3          36 ------VEELDSPDVVIDFS-SPEALPKTVDLCKKYRAGLVLG-TTAL   75 (128)
T ss_dssp             ------EEECSCCSEEEECS-CGGGHHHHHHHHHHHTCEEEEC-CCSC
T ss_pred             ------HHHhccCCEEEEec-CHHHHHHHHHHHHhcCCCEEEE-cCCC
Confidence                  11235689999976 4677778888999999998754 4454

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=95.58  E-value=0.04  Score=44.81  Aligned_cols=73  Identities=22%  Similarity=0.391  Sum_probs=48.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC-CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh---hCCCCeEEEEc
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK---FRPQMSITAHH   88 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~---~np~v~i~~~~   88 (410)
                      .||.|||+|.+|+.++-.|++.|+ .+|.|+|-+                   ..|++.-+.-++.   ..+...+... 
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~-------------------~~~~~g~a~Dl~~a~~~~~~~~i~~~-   61 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA-------------------KERVEAEVLDMQHGSSFYPTVSIDGS-   61 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS-------------------HHHHHHHHHHHHHTGGGSTTCEEEEE-
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec-------------------cccchhHHHHHHhccccCCCceeecC-
Confidence            589999999999999999999998 579998822                   2334333333333   3444444332 


Q ss_pred             cCCCCCcchHhhhccCcEEEEccC
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                      ...       +-++++|+||.+..
T Consensus        62 ~~~-------~~~~daDvVVitaG   78 (143)
T d1llda1          62 DDP-------EICRDADMVVITAG   78 (143)
T ss_dssp             SCG-------GGGTTCSEEEECCC
T ss_pred             CCH-------HHhhCCcEEEEecc
Confidence            111       33678999999754

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.57  E-value=0.04  Score=44.68  Aligned_cols=31  Identities=32%  Similarity=0.386  Sum_probs=28.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC-CcEEEEe
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGF-QDIHIID   43 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD   43 (410)
                      .||.|||+|.+|+.++-.|+..|. .+|.|+|
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~D   32 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVD   32 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEe
Confidence            489999999999999999999886 6899988

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.57  E-value=0.0079  Score=51.53  Aligned_cols=97  Identities=14%  Similarity=0.231  Sum_probs=59.5

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC----CCCeEEEEc
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR----PQMSITAHH   88 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~n----p~v~i~~~~   88 (410)
                      +||+|+|+|+.|+.++..|+..|- +++|.+.|.-..                   +.+.+.  +.|    |++++   .
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r~~~~~-------------------~~i~~~--~~n~~yl~~~~l---~   62 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCR-EVCVWHMNEEEV-------------------RLVNEK--RENVLFLKGVQL---A   62 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEE-EEEEECSCHHHH-------------------HHHHHH--TBCTTTSTTCBC---C
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCC-eEEEEEecHHHH-------------------HHHhhc--cccccccccccc---c
Confidence            579999999999999999999885 577776432111                   111110  112    22221   1


Q ss_pred             cCCCCCcchHhhhccCcEEEEccCChHHHHHHHHH-------HHHCCCcEEEe
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL-------CLAADVPLVES  134 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~-------c~~~~~p~i~~  134 (410)
                      .++.-.....+.++++|+|+.|+.+...|..+.+.       ....+.|++.+
T Consensus        63 ~~i~~t~~l~~a~~~ad~iiiavPs~~~~~~~~~~~~~~~~~~~~~~~~ii~~  115 (189)
T d1n1ea2          63 SNITFTSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVC  115 (189)
T ss_dssp             TTEEEESCHHHHHTTCSCEEECSCHHHHHHHHHHHCHHHHHHHHHHTCCEEEC
T ss_pred             cccccchhhhhccCCCCEEEEcCcHHHHHHHHHHHHhhhhhhhccCCcEEEEE
Confidence            11110111345678899999999877667666553       34567788775

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.55  E-value=0.0054  Score=48.66  Aligned_cols=31  Identities=19%  Similarity=0.476  Sum_probs=28.5

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +|++|||+|.+|+|+|..|+..|.. +||++.
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~-Vtii~~   54 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSK-VTVVEF   54 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcc-eeEEEe
Confidence            6899999999999999999999975 999874

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.52  E-value=0.015  Score=48.13  Aligned_cols=32  Identities=28%  Similarity=0.327  Sum_probs=28.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +.+|+|+|+|++|...+..+..+|. ++.++|.
T Consensus        27 g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~   58 (170)
T d1e3ja2          27 GTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTAR   58 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCEEEEEcccccchhhHhhHhhhcc-cccccch
Confidence            5789999999999999999999997 6888873

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.49  E-value=0.025  Score=48.83  Aligned_cols=33  Identities=18%  Similarity=0.297  Sum_probs=29.8

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCC-cEEEEeCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~-~i~liD~D   45 (410)
                      -||+|||+|..|...|..|.+.|.+ +++|+|..
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~   35 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQ   35 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            3899999999999999999999886 79999865

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.48  E-value=0.0066  Score=47.59  Aligned_cols=32  Identities=38%  Similarity=0.487  Sum_probs=29.2

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +||+|||.|.+|+|++..|.+.|. +++|++..
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~   53 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGA-KTHLFEMF   53 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CEEEEECCChhhHHHHHHhhcccc-EEEEEeec
Confidence            689999999999999999999997 69999754

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.47  E-value=0.0063  Score=47.65  Aligned_cols=30  Identities=30%  Similarity=0.511  Sum_probs=27.8

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      ++++|||+|.+|+|+|..|+..|.. +||++
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~-Vtlve   52 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTK-VTILE   52 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CeEEEECCCccceeeeeeecccccE-EEEEE
Confidence            6899999999999999999999955 99987

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.45  E-value=0.014  Score=48.73  Aligned_cols=33  Identities=24%  Similarity=0.474  Sum_probs=30.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +.+|+|+|+||+|...+..+...|..++..+|.
T Consensus        29 GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~   61 (176)
T d2jhfa2          29 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDI   61 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCEEEEECCCCcHHHHHHHHHHcCCceEEeecC
Confidence            357999999999999999999999999999873

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.45  E-value=0.018  Score=48.83  Aligned_cols=94  Identities=13%  Similarity=0.136  Sum_probs=56.1

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      ..+||+|||+|..|.+.|..|++.|. +++|+|.+..=-..++.-........-+.-.+-..+.+++.  ++++.. ...
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~--gV~i~l-~~~  117 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVT--GVTLKL-NHT  117 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHH--TCEEEE-SCC
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcC--CeEEEe-CCE
Confidence            46899999999999999999999996 69999865432222221100000011112223344555554  355532 233


Q ss_pred             CCCCcchHhhhccCcEEEEccCC
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLDN  113 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~Dn  113 (410)
                      ++.     +...++|.||.|+..
T Consensus       118 Vt~-----~~~~~~d~vilAtG~  135 (179)
T d1ps9a3         118 VTA-----DQLQAFDETILASGI  135 (179)
T ss_dssp             CCS-----SSSCCSSEEEECCCE
T ss_pred             Ecc-----cccccceeEEEeecC
Confidence            433     345789999998864

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.43  E-value=0.013  Score=48.40  Aligned_cols=31  Identities=29%  Similarity=0.460  Sum_probs=27.1

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .||.+||+|-+|..++++|+..|.. +++.|.
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~-V~~~d~   31 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYS-LVVSDR   31 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCE-EEEECS
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCe-EEEEeC
Confidence            4799999999999999999999975 677664

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=95.37  E-value=0.0081  Score=49.01  Aligned_cols=32  Identities=31%  Similarity=0.476  Sum_probs=29.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      +.||.|||+|.+|+.++-.|++.|+..+.++|
T Consensus         1 r~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D   32 (142)
T d1uxja1           1 RKKISIIGAGFVGSTTAHWLAAKELGDIVLLD   32 (142)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCSEEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCcceEEEEe
Confidence            36899999999999999999999999888887

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=95.36  E-value=0.021  Score=51.07  Aligned_cols=64  Identities=23%  Similarity=0.339  Sum_probs=47.2

Q ss_pred             HHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEE
Q 015243            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (410)
Q Consensus         8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~   86 (410)
                      +||+++.++|-| .+|||.++++.|+..|.. +.++|.+                   +.+.+.+++.+++..  .++..
T Consensus         1 krL~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~-------------------~~~l~~~~~~~~~~g--~~~~~   58 (260)
T d1zema1           1 KKFNGKVCLVTGAGGNIGLATALRLAEEGTA-IALLDMN-------------------REALEKAEASVREKG--VEARS   58 (260)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESC-------------------HHHHHHHHHHHHTTT--SCEEE
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECC-------------------HHHHHHHHHHHHhcC--CcEEE
Confidence            378999999998 579999999999999974 8888732                   345666667776654  35566


Q ss_pred             EccCCCC
Q 015243           87 HHANVKD   93 (410)
Q Consensus        87 ~~~~i~~   93 (410)
                      +..++++
T Consensus        59 ~~~Dv~~   65 (260)
T d1zema1          59 YVCDVTS   65 (260)
T ss_dssp             EECCTTC
T ss_pred             EEccCCC
Confidence            6666643

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.34  E-value=0.0082  Score=47.56  Aligned_cols=56  Identities=21%  Similarity=0.300  Sum_probs=40.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhh
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKF   78 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~   78 (410)
                      .++|+|||.|.+|+|+|..|+..|.. +|+++...        +.|  ....+..-++.+.+.+++.
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~-Vtlie~~~--------~~l--~~~~d~~~~~~~~~~l~~~   85 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKK-VTVIDILD--------RPL--GVYLDKEFTDVLTEEMEAN   85 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESSS--------STT--TTTCCHHHHHHHHHHHHTT
T ss_pred             CCEEEEECChHHHHHHHHHhhccceE-EEEEEecC--------ccc--ccccchhhHHHHHHHhhcC
Confidence            56899999999999999999999975 99987532        111  1123444556666766664

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.32  E-value=0.017  Score=52.04  Aligned_cols=65  Identities=20%  Similarity=0.329  Sum_probs=47.2

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC-CCCeEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR-PQMSITA   86 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~n-p~v~i~~   86 (410)
                      ||+++.++|.| .+|||-++++.|+..|. ++.++|.+                   ..+.+.+++.+++.. +..++..
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~-------------------~~~l~~~~~~l~~~~~~~~~~~~   61 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRS-------------------SERLEETRQIILKSGVSEKQVNS   61 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHTTTCCGGGEEE
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCCCCCceEE
Confidence            57888899887 68999999999999997 58888732                   235566666666653 3345666


Q ss_pred             EccCCCC
Q 015243           87 HHANVKD   93 (410)
Q Consensus        87 ~~~~i~~   93 (410)
                      +..++++
T Consensus        62 ~~~Dvs~   68 (272)
T d1xkqa_          62 VVADVTT   68 (272)
T ss_dssp             EECCTTS
T ss_pred             EEccCCC
Confidence            6666644

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.32  E-value=0.0078  Score=50.75  Aligned_cols=34  Identities=24%  Similarity=0.449  Sum_probs=30.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +.+|+|+|+|++|...+..+-.+|.+.+.++|.+
T Consensus        29 G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~   62 (174)
T d1e3ia2          29 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDIN   62 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCceeeeeccc
Confidence            4689999999999999999999999999998843

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.30  E-value=0.0051  Score=51.97  Aligned_cols=75  Identities=16%  Similarity=0.233  Sum_probs=50.2

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCe---EE
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMS---IT   85 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~---i~   85 (410)
                      ++++++|+|+|+||.+-.++..|  .+.++|+|+.          |.         ..|++.+++.+....+.-.   +.
T Consensus        15 ~~~~k~vlIlGaGG~arai~~aL--~~~~~i~I~n----------R~---------~~ka~~l~~~~~~~~~~~~~~~~~   73 (177)
T d1nvta1          15 RVKDKNIVIYGAGGAARAVAFEL--AKDNNIIIAN----------RT---------VEKAEALAKEIAEKLNKKFGEEVK   73 (177)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHH--TSSSEEEEEC----------SS---------HHHHHHHHHHHHHHHTCCHHHHEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH--ccccceeeeh----------hh---------hhHHHHHHHHHHHhhchhhhhhhh
Confidence            47899999999999999998776  4667898864          22         3577777777765433211   11


Q ss_pred             EEccCCCCCcchHhhhccCcEEEEccC
Q 015243           86 AHHANVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        86 ~~~~~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                      .  ..+      ......+|+||+|+.
T Consensus        74 ~--~~~------~~~~~~~dliIn~tp   92 (177)
T d1nvta1          74 F--SGL------DVDLDGVDIIINATP   92 (177)
T ss_dssp             E--ECT------TCCCTTCCEEEECSC
T ss_pred             h--hhh------hhccchhhhhccCCc
Confidence            1  111      123467899999874

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=95.30  E-value=0.023  Score=46.41  Aligned_cols=31  Identities=23%  Similarity=0.342  Sum_probs=27.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      .+|.+||+|-+|..+++.|...|-.++.+.|
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~   31 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIAN   31 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEEC
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEe
Confidence            4799999999999999999999977777765

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.29  E-value=0.0064  Score=47.86  Aligned_cols=32  Identities=28%  Similarity=0.412  Sum_probs=28.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      -+||+|||+|.+|+|+|..|+..|.. ++|++.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~-Vtlv~~   53 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGID-SYIFAR   53 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCE-EEEECS
T ss_pred             CCEEEEECCchHHHHHHHHHHhcccc-ceeeeh
Confidence            36899999999999999999999964 999874

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.21  E-value=0.017  Score=52.13  Aligned_cols=66  Identities=24%  Similarity=0.369  Sum_probs=48.0

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC-CCeEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP-QMSITA   86 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np-~v~i~~   86 (410)
                      ||++++++|-| .+|||.++++.|+..|.. +.++|.                   ...|.+.+++.+.+... ..++..
T Consensus         1 rL~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~r-------------------~~~~l~~~~~~i~~~~~~~~~~~~   60 (274)
T d1xhla_           1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQ-VTITGR-------------------NEDRLEETKQQILKAGVPAEKINA   60 (274)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEES-------------------CHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEEC-------------------CHHHHHHHHHHHHHcCCCCcceEE
Confidence            57888999887 679999999999999974 888773                   23455666677766543 346777


Q ss_pred             EccCCCCC
Q 015243           87 HHANVKDP   94 (410)
Q Consensus        87 ~~~~i~~~   94 (410)
                      +..++++.
T Consensus        61 ~~~Dv~~~   68 (274)
T d1xhla_          61 VVADVTEA   68 (274)
T ss_dssp             EECCTTSH
T ss_pred             EEeeCCCH
Confidence            77666543

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.18  E-value=0.072  Score=42.81  Aligned_cols=37  Identities=24%  Similarity=0.240  Sum_probs=29.4

Q ss_pred             ccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCcc
Q 015243          102 KQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFL  140 (410)
Q Consensus       102 ~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~  140 (410)
                      .++|+||+-+ ++++-...-++|.++++|++- ||.|+.
T Consensus        43 ~~~DvvIDFS-~p~~~~~~~~~~~~~~~~~Vi-GTTG~~   79 (135)
T d1yl7a1          43 GNTEVVIDFT-HPDVVMGNLEFLIDNGIHAVV-GTTGFT   79 (135)
T ss_dssp             TTCSEEEECC-CTTTHHHHHHHHHHTTCEEEE-CCCCCC
T ss_pred             ccCCEEEEcc-cHHHHHHHHHHHHhcCCCEEE-eccccc
Confidence            4689999987 467777788899999999976 566764

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=95.17  E-value=0.01  Score=48.66  Aligned_cols=34  Identities=29%  Similarity=0.603  Sum_probs=30.7

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCC-CcEEEEeC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDM   44 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~   44 (410)
                      .+.||.|||+|.+|+.++..|+..|. .++.|+|-
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~   38 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDV   38 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeec
Confidence            46799999999999999999999996 58999983

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.16  E-value=0.064  Score=44.68  Aligned_cols=34  Identities=21%  Similarity=0.367  Sum_probs=30.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ..+|+|+|+|++|...+..+..+|..++..+|.+
T Consensus        28 G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~   61 (174)
T d1p0fa2          28 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTH   61 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceeeccCCh
Confidence            4579999999999999999999999999999843

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=95.06  E-value=0.048  Score=44.18  Aligned_cols=33  Identities=33%  Similarity=0.576  Sum_probs=29.2

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      -+||.||| +|.+|..++++|...|.. ++++|.+
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~~~G~~-V~~~d~~   42 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLRASGYP-ISILDRE   42 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCC-EEEECTT
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHHcCCC-cEecccc
Confidence            36999999 899999999999999985 8888854

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.03  E-value=0.0096  Score=46.44  Aligned_cols=31  Identities=26%  Similarity=0.442  Sum_probs=28.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ++++|||.|.+|+|+|..|+..|. ++||++.
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~-~Vtlve~   52 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGA-QVSVVEA   52 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             CeEEEECCCHHHHHHHHHHhhccc-ceEEEee
Confidence            689999999999999999999996 5999875

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=95.00  E-value=0.011  Score=53.51  Aligned_cols=36  Identities=25%  Similarity=0.656  Sum_probs=32.8

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE   48 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve   48 (410)
                      -+|+|||+|.+|+.+|..|++.|..+++|+|.+.+.
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~~~   37 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLN   37 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence            379999999999999999999999899999987654

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.95  E-value=0.021  Score=50.99  Aligned_cols=70  Identities=21%  Similarity=0.387  Sum_probs=49.2

Q ss_pred             CCCHHHHHHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC
Q 015243            1 MVSERQLEAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR   79 (410)
Q Consensus         1 ~~g~e~q~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~n   79 (410)
                      |+..+.+ +|+++.++|-| .+|||.++++.|+..|.. +.++|.+                   ..+.+.+++.+++..
T Consensus         1 m~~~d~m-~L~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~-------------------~~~~~~~~~~l~~~g   59 (255)
T d1fmca_           1 MFNSDNL-RLDGKCAIITGAGAGIGKEIAITFATAGAS-VVVSDIN-------------------ADAANHVVDEIQQLG   59 (255)
T ss_dssp             CCCGGGG-CCTTCEEEETTTTSHHHHHHHHHHHTTTCE-EEEEESC-------------------HHHHHHHHHHHHHTT
T ss_pred             CCCCCCC-CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECC-------------------HHHHHHHHHHHHHcC
Confidence            4544444 47888888887 679999999999999975 8887732                   345666777777665


Q ss_pred             CCCeEEEEccCCCC
Q 015243           80 PQMSITAHHANVKD   93 (410)
Q Consensus        80 p~v~i~~~~~~i~~   93 (410)
                      +  ++..+..++++
T Consensus        60 ~--~~~~~~~Dvs~   71 (255)
T d1fmca_          60 G--QAFACRCDITS   71 (255)
T ss_dssp             C--CEEEEECCTTC
T ss_pred             C--cEEEEEccCCC
Confidence            4  45556666644

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.95  E-value=0.026  Score=50.43  Aligned_cols=65  Identities=17%  Similarity=0.275  Sum_probs=47.6

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC-CCCeEEE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR-PQMSITA   86 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~n-p~v~i~~   86 (410)
                      ||+++.++|.| .+|||.++++.|+..|. ++.++|.+                   ..+.+.+++.+++.. +..++..
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~l~~~~~~~~~~~~   61 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRH-------------------AERLEETRQQILAAGVSEQNVNS   61 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTCCGGGEEE
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCCCcCceEE
Confidence            67888888887 68999999999999997 58888732                   245666677776654 3345777


Q ss_pred             EccCCCC
Q 015243           87 HHANVKD   93 (410)
Q Consensus        87 ~~~~i~~   93 (410)
                      +..++++
T Consensus        62 ~~~Dvt~   68 (264)
T d1spxa_          62 VVADVTT   68 (264)
T ss_dssp             EECCTTS
T ss_pred             EEccCCC
Confidence            7666654

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.92  E-value=0.043  Score=49.99  Aligned_cols=82  Identities=23%  Similarity=0.358  Sum_probs=57.7

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC---CCeE
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP---QMSI   84 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np---~v~i   84 (410)
                      +|+++.++|.| .+|||.++++.|+..|. ++.++|.+                   ..|.+.+++.+....+   ..++
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~-------------------~~~l~~~~~el~~~~~~~~~~~~   68 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRK-------------------LERLKSAADELQANLPPTKQARV   68 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTSCTTCCCCE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhhhccccCceE
Confidence            58899999997 67999999999999997 48888732                   3456666666665432   4567


Q ss_pred             EEEccCCCCCcchHh-------hhccCcEEEEc
Q 015243           85 TAHHANVKDPKFNVE-------FFKQFNVVLNG  110 (410)
Q Consensus        85 ~~~~~~i~~~~~~~~-------~~~~~DvVi~a  110 (410)
                      ..+..++++......       .+.+.|++|++
T Consensus        69 ~~~~~Dvs~~~~v~~~~~~~~~~~G~iDiLVnn  101 (297)
T d1yxma1          69 IPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNN  101 (297)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             EEEeccCCCHHHHHHHHHHHHHHhCCeEEEEee
Confidence            777777765432222       24567888875

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.91  E-value=0.01  Score=46.91  Aligned_cols=33  Identities=30%  Similarity=0.608  Sum_probs=29.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .++|+|||.|.+|+|+|..|+..|. +++|++..
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~-~Vtlv~~~   64 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRG   64 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccc-eEEEEecc
Confidence            4789999999999999999999996 48998754

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.91  E-value=0.11  Score=44.91  Aligned_cols=37  Identities=24%  Similarity=0.503  Sum_probs=31.9

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCC-CcEEEEeCC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGF-QDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv-~~i~liD~D   45 (410)
                      ++++++|+|.| .|-+|.++++.|..-|. .+++++..+
T Consensus        11 ~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~   49 (232)
T d2bkaa1          11 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRR   49 (232)
T ss_dssp             HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESS
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecC
Confidence            57889999998 79999999999999885 578887653

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.91  E-value=0.09  Score=42.51  Aligned_cols=91  Identities=10%  Similarity=0.049  Sum_probs=58.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      +-+|+|+|+|.+|..+++.|...|.. ++++|.|.-                   +.....+.+  ...++  ....++.
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~~-v~vId~d~~-------------------~~~~~~~~~--~~~~~--~vi~Gd~   58 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQN-VTVISNLPE-------------------DDIKQLEQR--LGDNA--DVIPGDS   58 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCC-EEEEECCCH-------------------HHHHHHHHH--HCTTC--EEEESCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCC-EEEEeccch-------------------hHHHHHHHh--hcCCc--EEEEccC
Confidence            45799999999999999999999975 778875431                   111111211  12233  3344555


Q ss_pred             CCCc-chHhhhccCcEEEEccCChHHHHHHHHHHHH
Q 015243           92 KDPK-FNVEFFKQFNVVLNGLDNLDARRHVNRLCLA  126 (410)
Q Consensus        92 ~~~~-~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~  126 (410)
                      ++.. +...-++++|.||.++++...-..+...+++
T Consensus        59 ~d~~~L~~a~i~~a~~vi~~~~~d~~n~~~~~~~r~   94 (153)
T d1id1a_          59 NDSSVLKKAGIDRCRAILALSDNDADNAFVVLSAKD   94 (153)
T ss_dssp             TSHHHHHHHTTTTCSEEEECSSCHHHHHHHHHHHHH
T ss_pred             cchHHHHHhccccCCEEEEccccHHHHHHHHHHHHH
Confidence            4322 2233467899999999887766666666665

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.88  E-value=0.011  Score=46.90  Aligned_cols=31  Identities=26%  Similarity=0.384  Sum_probs=28.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +|++|||.|.+|+|++..|+..|.. ++|++.
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~-Vtlv~~   53 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSK-TSLMIR   53 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcE-EEEEee
Confidence            6899999999999999999999964 888875

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.83  E-value=0.013  Score=47.11  Aligned_cols=34  Identities=21%  Similarity=0.480  Sum_probs=30.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      .++|+|||+|.+|+|+|..|+..|.. +++++...
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~~-Vtvie~~~   68 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANMH-VTLLDTAA   68 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCcc-eeeeeecc
Confidence            57899999999999999999999975 99998643

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=94.80  E-value=0.047  Score=45.69  Aligned_cols=97  Identities=14%  Similarity=0.142  Sum_probs=59.7

Q ss_pred             CCcEEEECCcHHHHH--HHHHHHHh-C--CCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEE
Q 015243           12 GAKVLMVGAGGIGCE--LLKTLALS-G--FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (410)
Q Consensus        12 ~~~VlvvG~GgiG~e--v~knLa~~-G--v~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~   86 (410)
                      +.||.|||+|++|..  ++..|++. +  .++|.|+|-|.-               .-+..+..+.+.....++..++..
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~---------------~~~~~~~~~~~~~~~~~~~~~i~~   66 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEE---------------RLDAILTIAKKYVEEVGADLKFEK   66 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHH---------------HHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCch---------------HHHHHHHHHHHHHHhcCCCeEEEE
Confidence            579999999999865  44455543 2  368999984321               001123334455556777778877


Q ss_pred             EccCCCCCcchHhhhccCcEEEEccCC--hHHHHHHHHHHHHCCCc
Q 015243           87 HHANVKDPKFNVEFFKQFNVVLNGLDN--LDARRHVNRLCLAADVP  130 (410)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~DvVi~a~Dn--~~~r~~i~~~c~~~~~p  130 (410)
                      ..+.       .+-++++|+|+++..-  .+.+...+....+++.|
T Consensus        67 ~td~-------~eaL~dad~Vv~~~~~g~~~~~~~~~~i~~~~g~~  105 (171)
T d1obba1          67 TMNL-------DDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYY  105 (171)
T ss_dssp             ESCH-------HHHHTTCSEEEECCCTTHHHHHHHHHHHHHHTTCT
T ss_pred             eCCh-------hhcccCCCeEeeecccccccceeeehhcchhhhhc
Confidence            6432       3557899999997543  44555555566666554

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.79  E-value=0.015  Score=47.67  Aligned_cols=35  Identities=31%  Similarity=0.522  Sum_probs=31.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCC-cEEEEeCCc
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMDT   46 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~-~i~liD~D~   46 (410)
                      .+||+|||+|.+|.|++..|.+.|-. +|+|+|.+.
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            57999999999999999999999863 799998764

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.77  E-value=0.012  Score=46.78  Aligned_cols=31  Identities=29%  Similarity=0.591  Sum_probs=28.1

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ++++|||.|.+|+|+|..|...|.. +++++.
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~~-Vtive~   57 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGSR-LDVVEM   57 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCE-EEEECS
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCCE-EEEEEe
Confidence            6899999999999999999999964 888864

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.77  E-value=0.039  Score=44.87  Aligned_cols=91  Identities=19%  Similarity=0.273  Sum_probs=57.8

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHhC--CCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           12 GAKVLMVGA-GGIGCELLKTLALSG--FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        12 ~~~VlvvG~-GgiG~ev~knLa~~G--v~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      ..+|.|||+ |-+|.|+++.|...+  ..++..+               .+.+..|+.        +....++..+    
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~---------------~s~~~~Gk~--------i~~~~~~~~~----   54 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLL---------------ASAESAGQR--------MGFAESSLRV----   54 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEE---------------ECTTTTTCE--------EEETTEEEEC----
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEE---------------eecccCCcc--------eeeccccchh----
Confidence            478999996 899999999998655  3445543               233445542        1111121111    


Q ss_pred             cCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEec
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g  135 (410)
                           .......+.+.|+++.|+.+..++.+... ....+..+||.+
T Consensus        55 -----~~~~~~~~~~~d~vf~a~p~~~s~~~~~~-~~~~g~~VID~S   95 (144)
T d2hjsa1          55 -----GDVDSFDFSSVGLAFFAAAAEVSRAHAER-ARAAGCSVIDLS   95 (144)
T ss_dssp             -----EEGGGCCGGGCSEEEECSCHHHHHHHHHH-HHHTTCEEEETT
T ss_pred             -----ccchhhhhccceEEEecCCcchhhhhccc-cccCCceEEeec
Confidence                 11223446889999999987666666555 456788888854

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.65  E-value=0.019  Score=44.85  Aligned_cols=55  Identities=16%  Similarity=0.166  Sum_probs=39.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCC--cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhh
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKF   78 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~--~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~   78 (410)
                      ++++|||.|.+|+|+|..|...|..  +++|+++..        +.| +.  ....=++.+.+.+++.
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~--------~iL-~~--~d~~~~~~l~~~l~~~   77 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE--------MIL-RG--FDHTLREELTKQLTAN   77 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS--------SSS-TT--SCHHHHHHHHHHHHHT
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc--------hhh-cc--cchHHHHHHHHHHHhc
Confidence            6899999999999999999988874  699997521        222 21  2334456677777765

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.44  E-value=0.046  Score=48.45  Aligned_cols=80  Identities=20%  Similarity=0.339  Sum_probs=54.3

Q ss_pred             hCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      .++.++|.| .+|||.++++.|+..|. ++.++|.+                   ..+.+.+++.+.+..+..++..+..
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~   61 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWN-------------------LEAGVQCKAALHEQFEPQKTLFIQC   61 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHTTTSCGGGEEEEEC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            456677777 68999999999999997 48888732                   2355566666666666667777777


Q ss_pred             CCCCCcchHh-------hhccCcEEEEc
Q 015243           90 NVKDPKFNVE-------FFKQFNVVLNG  110 (410)
Q Consensus        90 ~i~~~~~~~~-------~~~~~DvVi~a  110 (410)
                      ++++...-.+       -+.+.|++|++
T Consensus        62 Dv~~~~~v~~~~~~~~~~~G~iDilVnn   89 (254)
T d2gdza1          62 DVADQQQLRDTFRKVVDHFGRLDILVNN   89 (254)
T ss_dssp             CTTSHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             ecCCHHHHHHHHHHHHHHcCCcCeeccc
Confidence            7754322112       23467777775

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=94.43  E-value=0.025  Score=48.91  Aligned_cols=36  Identities=33%  Similarity=0.547  Sum_probs=32.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE   48 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve   48 (410)
                      .+||+|||+|-.|..+|..|+..|. +++|+|.+.+.
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~-~V~vier~~~~   41 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGY-SVHILARDLPE   41 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCTT
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCC-CEEEEeCCCCC
Confidence            4689999999999999999999998 59999977553

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.37  E-value=0.018  Score=44.92  Aligned_cols=32  Identities=19%  Similarity=0.246  Sum_probs=28.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .++|+|||.|.+|+|+|..|++.|.. +++++.
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~~-vt~i~~   53 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGRR-TVMLVR   53 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcchh-heEeec
Confidence            57999999999999999999999854 888764

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=94.32  E-value=0.063  Score=49.66  Aligned_cols=32  Identities=28%  Similarity=0.434  Sum_probs=25.2

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +++|||.| .|=||+.+++.|...|. +++.+|.
T Consensus         1 ~K~vLITGatGfiGs~lv~~Ll~~g~-~V~~~~r   33 (357)
T d1db3a_           1 SKVALITGVTGQDGSYLAEFLLEKGY-EVHGIKR   33 (357)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCcC-EEEEEEC
Confidence            35677888 56699999999999985 5777764

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.28  E-value=0.066  Score=47.39  Aligned_cols=34  Identities=24%  Similarity=0.509  Sum_probs=29.4

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      |+++.++|.| .+|||.++++.|+..|. ++.++|.
T Consensus         3 l~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r   37 (251)
T d1vl8a_           3 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASR   37 (251)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            5788889997 67999999999999997 5888873

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=94.21  E-value=0.12  Score=41.81  Aligned_cols=74  Identities=18%  Similarity=0.233  Sum_probs=48.3

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCC-cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh---hCCCCeEEEE
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK---FRPQMSITAH   87 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~-~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~---~np~v~i~~~   87 (410)
                      +||.|+| +|.+|+.++-.|+..|+. ++.|+|-+.                 .+.+++..+.-+..   +.+..++.. 
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~-----------------~~~~~~g~a~Dl~~~~~~~~~~~i~~-   62 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPD-----------------KEDDTVGQAADTNHGIAYDSNTRVRQ-   62 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGG-----------------GHHHHHHHHHHHHHHHTTTCCCEEEE-
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCC-----------------cccccceeecchhhcccccCCceEee-
Confidence            5899999 699999999999999975 688887321                 12344433334443   444444432 


Q ss_pred             ccCCCCCcchHhhhccCcEEEEccC
Q 015243           88 HANVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        88 ~~~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                       ...       +-++++|+||.+..
T Consensus        63 -~~~-------~~~~~aDiVvitaG   79 (142)
T d1o6za1          63 -GGY-------EDTAGSDVVVITAG   79 (142)
T ss_dssp             -CCG-------GGGTTCSEEEECCC
T ss_pred             -CCH-------HHhhhcCEEEEecc
Confidence             221       23579999998754

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=94.19  E-value=0.068  Score=44.54  Aligned_cols=92  Identities=15%  Similarity=0.223  Sum_probs=59.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhC-----CCcEEEEeCCccCcccCccccCCCCCCCCchH----HHHHHHHHHhhCCCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSG-----FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK----AKVARDAVLKFRPQM   82 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~G-----v~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~K----a~~a~~~l~~~np~v   82 (410)
                      +.||.|||+|++|...+-...+..     +++|.|+|-|                   +.|    ++.+.......+...
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did-------------------~~~~~~~~~~~~~~~~~~~~~~   63 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDND-------------------KERQDRIAGACDVFIREKAPDI   63 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSC-------------------HHHHHHHHHHHHHHHHHHCTTS
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCC-------------------hhHHHHHHHHHHHHHHHhCCCc
Confidence            568999999998875433222222     3578888733                   233    445555555667777


Q ss_pred             eEEEEccCCCCCcchHhhhccCcEEEEccCC--hHHHHHHHHHHHHCCC
Q 015243           83 SITAHHANVKDPKFNVEFFKQFNVVLNGLDN--LDARRHVNRLCLAADV  129 (410)
Q Consensus        83 ~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn--~~~r~~i~~~c~~~~~  129 (410)
                      +++...+.       .+-++++|+||.+..-  .+.+........++|+
T Consensus        64 ~~~~~~d~-------~eal~~AD~Vvitag~~~~~g~~rd~~i~~~~Gi  105 (167)
T d1u8xx1          64 EFAATTDP-------EEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGV  105 (167)
T ss_dssp             EEEEESCH-------HHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTC
T ss_pred             ceEecCCh-------hhccCCCCEEEECCCcCCCCceeHHHhhchhcCc
Confidence            77776432       3557899999998643  3455666667777776

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.18  E-value=0.021  Score=44.71  Aligned_cols=30  Identities=33%  Similarity=0.504  Sum_probs=27.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      ++++|||.|.+|+|+|..|+..|.. ++++.
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~-Vtiv~   52 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAE-VTVLE   52 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCc-eEEEE
Confidence            7899999999999999999999986 77765

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=94.17  E-value=0.084  Score=48.95  Aligned_cols=33  Identities=27%  Similarity=0.393  Sum_probs=28.1

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +||||.| +|-||+++++.|+..|...+..+|..
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~   34 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKL   34 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            4799998 55599999999999998878888854

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=94.16  E-value=0.065  Score=48.22  Aligned_cols=82  Identities=18%  Similarity=0.309  Sum_probs=52.9

Q ss_pred             HHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEE
Q 015243            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (410)
Q Consensus         8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~   86 (410)
                      .+|+++.++|.| .||||.++++.|+..|. ++.++|.+                   ..|.+.+++.+.+.++ .++..
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~-------------------~~~l~~~~~~l~~~~g-~~~~~   79 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRK-------------------MDVLKATAEQISSQTG-NKVHA   79 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHHHS-SCEEE
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECC-------------------HHHHHHHHHHHHHhcC-CceEE
Confidence            368889999997 78999999999999995 58888742                   2345555555554443 34555


Q ss_pred             EccCCCCCcch-------HhhhccCcEEEEc
Q 015243           87 HHANVKDPKFN-------VEFFKQFNVVLNG  110 (410)
Q Consensus        87 ~~~~i~~~~~~-------~~~~~~~DvVi~a  110 (410)
                      +..++++...-       ...+...|++|++
T Consensus        80 ~~~D~~~~~~v~~~~~~~~~~~g~iDilvnn  110 (294)
T d1w6ua_          80 IQCDVRDPDMVQNTVSELIKVAGHPNIVINN  110 (294)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHTCSCSEEEEC
T ss_pred             EEecccChHHHHHHhhhhhhhccccchhhhh
Confidence            55555432111       1223456777665

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.08  E-value=0.023  Score=48.12  Aligned_cols=31  Identities=35%  Similarity=0.602  Sum_probs=29.2

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +|+|||+|..|...|..|++.|+.+++|+|.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~   32 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEA   32 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEEC
Confidence            6999999999999999999999988999885

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.03  E-value=0.038  Score=45.72  Aligned_cols=33  Identities=24%  Similarity=0.488  Sum_probs=29.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ..+|+|.|+||+|.-.+..+..+|...+..+|.
T Consensus        29 G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~   61 (176)
T d2fzwa2          29 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDI   61 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECS
T ss_pred             CCEEEEecchhHHHHHHHHHHHHhcCceEEEcc
Confidence            457999999999999999999999999998874

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=93.99  E-value=0.23  Score=43.75  Aligned_cols=108  Identities=19%  Similarity=0.235  Sum_probs=61.4

Q ss_pred             hCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           11 KGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        11 ~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      +++||+|.|+ |-+|..+++.|...|. ++++++.+..              .....|.+.+.. +  ..+.  ++....
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~--------------~~~~~~~~~~~~-~--~~~~--v~~v~~   61 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPEV--------------VSNIDKVQMLLY-F--KQLG--AKLIEA   61 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSCC--------------SSCHHHHHHHHH-H--HTTT--CEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCCc--------------ccchhHHHHHhh-h--ccCC--cEEEEe
Confidence            4688999995 8899999999999995 4666543211              111223222211 1  2233  444555


Q ss_pred             CCCCCcchHhhhccCcEEEEccC------Ch-HHHHHHHHHHHHCCCcEEEecccC
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLD------NL-DARRHVNRLCLAADVPLVESGTTG  138 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~D------n~-~~r~~i~~~c~~~~~p~i~~g~~G  138 (410)
                      ++.+.......+.+.+.++.+..      +. .....+...+.....+++..++.|
T Consensus        62 d~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ss~g  117 (312)
T d1qyda_          62 SLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLPSEFG  117 (312)
T ss_dssp             CSSCHHHHHHHHTTCSEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEECSCCS
T ss_pred             ecccchhhhhhccCcchhhhhhhhcccccchhhhhHHHHHHHHhcCCcEEEEeecc
Confidence            66544444566788888888642      22 233344444444556766655433

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=93.96  E-value=0.088  Score=46.62  Aligned_cols=81  Identities=23%  Similarity=0.419  Sum_probs=54.9

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      |+++.|+|.| .+|||-++++.|+..|..-+.+.|.+.                    +.+ ..+.++..++..++..+.
T Consensus         3 l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~--------------------~~~-~~~~~~~~~~~~~~~~~~   61 (254)
T d1sbya1           3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE--------------------NPT-ALAELKAINPKVNITFHT   61 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC--------------------CHH-HHHHHHHHCTTSEEEEEE
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcc--------------------cHH-HHHHHHhhCCCCCEEEEE
Confidence            6789999998 569999999999999998666654221                    111 234566778888888888


Q ss_pred             cCCCCCc-chH-------hhhccCcEEEEcc
Q 015243           89 ANVKDPK-FNV-------EFFKQFNVVLNGL  111 (410)
Q Consensus        89 ~~i~~~~-~~~-------~~~~~~DvVi~a~  111 (410)
                      .+++.+. .-.       +-+.+.|++|++.
T Consensus        62 ~d~~~~~~~~~~~~~~~~~~~g~iDilvnnA   92 (254)
T d1sbya1          62 YDVTVPVAESKKLLKKIFDQLKTVDILINGA   92 (254)
T ss_dssp             CCTTSCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             eecCCCHHHHHHHHHHHHHHcCCCCEEEeCC
Confidence            7775321 111       1245678888753

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=93.85  E-value=0.079  Score=47.08  Aligned_cols=61  Identities=16%  Similarity=0.259  Sum_probs=44.3

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      |++++++|.| .+|||.++++.|+..|. ++.++|.+                   ..+.+.+++.+++...  .+..+.
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~-------------------~~~l~~~~~~~~~~~~--~~~~~~   61 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRN-------------------EKELDECLEIWREKGL--NVEGSV   61 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC--CEEEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--CceEEE
Confidence            6789999998 78999999999999997 69988742                   3455666666666543  344444


Q ss_pred             cCCC
Q 015243           89 ANVK   92 (410)
Q Consensus        89 ~~i~   92 (410)
                      .+++
T Consensus        62 ~D~s   65 (258)
T d1ae1a_          62 CDLL   65 (258)
T ss_dssp             CCTT
T ss_pred             eecC
Confidence            4443

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=93.82  E-value=0.23  Score=44.97  Aligned_cols=103  Identities=17%  Similarity=0.281  Sum_probs=62.5

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      +||||.| .|-||+.+++.|...|--++..+|...   .+..                       +....-+++....++
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~---~~~~-----------------------~~~~~~~~~~i~~Di   54 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGS---DAIS-----------------------RFLNHPHFHFVEGDI   54 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCC---GGGG-----------------------GGTTCTTEEEEECCT
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCC---cchh-----------------------hhccCCCeEEEECcc
Confidence            4799998 566999999999999855688777321   1111                       111122456666676


Q ss_pred             CCCc-chHhhhccCcEEEEccCC-----------------hHHHHHHHHHHHHCCCcEEEecccCccc
Q 015243           92 KDPK-FNVEFFKQFNVVLNGLDN-----------------LDARRHVNRLCLAADVPLVESGTTGFLG  141 (410)
Q Consensus        92 ~~~~-~~~~~~~~~DvVi~a~Dn-----------------~~~r~~i~~~c~~~~~p~i~~g~~G~~G  141 (410)
                      +... ......+++|+|+.+..-                 ......+-+.|.+.++..+...+...+|
T Consensus        55 ~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~~~~ss~~~~~  122 (342)
T d2blla1          55 SIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYG  122 (342)
T ss_dssp             TTCSHHHHHHHHHCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGB
T ss_pred             CChHHHHHHHHhCCCccccccccccccccccCCccccccccccccccccccccccccccccccccccc
Confidence            5432 233356789999885421                 1123445566778888777765554444

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.80  E-value=0.076  Score=46.94  Aligned_cols=62  Identities=24%  Similarity=0.253  Sum_probs=44.5

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      |.++.++|.| .+|||.++++.|+..|. ++.++|.+                   ..+.+.+++.+++...  ++..+.
T Consensus         8 lenKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~l~~~g~--~~~~~~   65 (251)
T d2c07a1           8 GENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRT-------------------QKSCDSVVDEIKSFGY--ESSGYA   65 (251)
T ss_dssp             CSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESS-------------------HHHHHHHHHHHHTTTC--CEEEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--cEEEEE
Confidence            5677788887 57999999999999996 58888732                   2456667777766543  455555


Q ss_pred             cCCCC
Q 015243           89 ANVKD   93 (410)
Q Consensus        89 ~~i~~   93 (410)
                      .++++
T Consensus        66 ~Dvt~   70 (251)
T d2c07a1          66 GDVSK   70 (251)
T ss_dssp             CCTTC
T ss_pred             ccCCC
Confidence            56543

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.77  E-value=0.12  Score=41.90  Aligned_cols=67  Identities=15%  Similarity=0.330  Sum_probs=43.6

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~   92 (410)
                      .||.+||+|-+|+.+++.|...| .++++.|.+                   ..|.+.+++..   .  +.       +.
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~-~~i~v~~r~-------------------~~~~~~l~~~~---g--~~-------~~   48 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTP-HELIISGSS-------------------LERSKEIAEQL---A--LP-------YA   48 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSS-CEEEEECSS-------------------HHHHHHHHHHH---T--CC-------BC
T ss_pred             CEEEEEeccHHHHHHHHHHHhCC-CeEEEEcCh-------------------HHhHHhhcccc---c--ee-------ee
Confidence            47999999999999999998876 356665422                   12444333322   1  11       11


Q ss_pred             CCcchHhhhccCcEEEEccCC
Q 015243           93 DPKFNVEFFKQFNVVLNGLDN  113 (410)
Q Consensus        93 ~~~~~~~~~~~~DvVi~a~Dn  113 (410)
                        ....+..+.+|+|+.|+..
T Consensus        49 --~~~~~~~~~~dvIilavkp   67 (152)
T d2ahra2          49 --MSHQDLIDQVDLVILGIKP   67 (152)
T ss_dssp             --SSHHHHHHTCSEEEECSCG
T ss_pred             --chhhhhhhccceeeeecch
Confidence              1245668899999999854

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.75  E-value=0.024  Score=44.72  Aligned_cols=31  Identities=26%  Similarity=0.533  Sum_probs=28.1

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ++++|||+|-+|+|+|..|++.|. ++|++..
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~   56 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEF   56 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             CeEEEEccchHHHHHHHHHHhcCC-eEEEEEE
Confidence            589999999999999999999996 6999864

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=93.65  E-value=0.039  Score=44.78  Aligned_cols=34  Identities=32%  Similarity=0.465  Sum_probs=29.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCC-CcEEEEeCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMD   45 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~D   45 (410)
                      +.||.|||+|.+|+.++-.|+..|. .+|.|+|-+
T Consensus         1 r~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~   35 (142)
T d1y6ja1           1 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVF   35 (142)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEecc
Confidence            3689999999999999999999997 479999933

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.56  E-value=0.024  Score=46.26  Aligned_cols=31  Identities=39%  Similarity=0.612  Sum_probs=26.6

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +||+|||.|.+|+|++..|.+ | .+++|++..
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~-~~Vtvv~~~   31 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-T-YEVTVIDKE   31 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-T-SEEEEECSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-C-CCEEEEecc
Confidence            589999999999999999976 3 379999754

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=93.53  E-value=0.033  Score=47.85  Aligned_cols=34  Identities=24%  Similarity=0.375  Sum_probs=30.2

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      .|.+++|.|||+|.||.++++.|...|+. +..+|
T Consensus        40 el~gk~vgIiG~G~IG~~va~~l~~fg~~-V~~~d   73 (197)
T d1j4aa1          40 EVRDQVVGVVGTGHIGQVFMQIMEGFGAK-VITYD   73 (197)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEEC
T ss_pred             cccCCeEEEecccccchhHHHhHhhhccc-ccccC
Confidence            47899999999999999999999988974 66666

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=93.49  E-value=0.15  Score=45.01  Aligned_cols=59  Identities=27%  Similarity=0.393  Sum_probs=41.8

Q ss_pred             CcEE-EEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           13 AKVL-MVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        13 ~~Vl-vvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      +||+ |-| .+|||-++++.|+..|. ++.+.|.+                   ..+.+.+++.+++...  ++..+..+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~i~~~g~--~~~~~~~D   58 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYN-------------------DATAKAVASEINQAGG--HAVAVKVD   58 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC--CEEEEECC
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--cEEEEEee
Confidence            4664 446 67999999999999997 58888732                   3466667777776543  56666666


Q ss_pred             CCC
Q 015243           91 VKD   93 (410)
Q Consensus        91 i~~   93 (410)
                      +++
T Consensus        59 v~~   61 (255)
T d1gega_          59 VSD   61 (255)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            654

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.49  E-value=0.13  Score=45.37  Aligned_cols=62  Identities=15%  Similarity=0.215  Sum_probs=44.3

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      |..+.++|.| .+|||-++++.|+..|.. +.+.|.                   ...|.+.+++.++..++  ++..+.
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~~G~~-V~l~~r-------------------~~~~l~~~~~~~~~~~~--~~~~~~   62 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAKLKSK-LVLWDI-------------------NKHGLEETAAKCKGLGA--KVHTFV   62 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES-------------------CHHHHHHHHHHHHHTTC--CEEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEEC-------------------CHHHHHHHHHHHHhcCC--cEEEEE
Confidence            5677778877 568999999999999975 888772                   23456667777776654  455555


Q ss_pred             cCCCC
Q 015243           89 ANVKD   93 (410)
Q Consensus        89 ~~i~~   93 (410)
                      .++++
T Consensus        63 ~Dvs~   67 (244)
T d1yb1a_          63 VDCSN   67 (244)
T ss_dssp             CCTTC
T ss_pred             eeCCC
Confidence            56543

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.43  E-value=0.034  Score=49.55  Aligned_cols=33  Identities=30%  Similarity=0.420  Sum_probs=29.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +.+|+|||+|..|..+|..|++.|+ +++|+|..
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~-~v~vlE~~   34 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQ   34 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            5689999999999999999999999 59998854

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=93.39  E-value=0.088  Score=46.49  Aligned_cols=35  Identities=20%  Similarity=0.399  Sum_probs=30.5

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ||+++.++|.| .+|||.++++.|+..|.. +.++|.
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r   38 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAK-VMITGR   38 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            68888899987 789999999999999975 888773

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=93.38  E-value=0.12  Score=45.92  Aligned_cols=35  Identities=29%  Similarity=0.491  Sum_probs=31.0

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ||+++.++|.| .+|||-++++.|+..|.. +.++|.
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~-V~i~~r   38 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAK-VVIADI   38 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEEC
Confidence            78999999998 679999999999999965 888874

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=93.37  E-value=0.03  Score=48.72  Aligned_cols=32  Identities=22%  Similarity=0.488  Sum_probs=29.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .+||+|||+|.-|...|..|++.|. +++|+|.
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~-~V~vlE~   32 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEA   32 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEeC
Confidence            4789999999999999999999998 5999884

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=93.35  E-value=0.13  Score=45.69  Aligned_cols=80  Identities=16%  Similarity=0.256  Sum_probs=54.0

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      |+++.++|.| .+|||.++++.|+..|. ++.+.|.+.                  ..+.+.+++.+++..+  ++..+.
T Consensus         5 L~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~------------------~~~~~~~~~~~~~~g~--~~~~~~   63 (261)
T d1geea_           5 LEGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSK------------------EDEANSVLEEIKKVGG--EAIAVK   63 (261)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC------------------HHHHHHHHHHHHHTTC--EEEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCc------------------HHHHHHHHHHHHhcCC--cEEEEE
Confidence            7888888887 68999999999999997 477776321                  2356667777776653  566666


Q ss_pred             cCCCCCcchHh-------hhccCcEEEEc
Q 015243           89 ANVKDPKFNVE-------FFKQFNVVLNG  110 (410)
Q Consensus        89 ~~i~~~~~~~~-------~~~~~DvVi~a  110 (410)
                      .++++......       -+.+.|++|++
T Consensus        64 ~Dvt~~~~v~~~~~~~~~~~G~iDiLVnn   92 (261)
T d1geea_          64 GDVTVESDVINLVQSAIKEFGKLDVMINN   92 (261)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             ccCCCHHHHHHHHHHHHHHhCCCCEeecc
Confidence            67754322222       23456777764

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.31  E-value=0.085  Score=46.72  Aligned_cols=35  Identities=29%  Similarity=0.534  Sum_probs=30.3

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ||++++++|.| .+|||-++++.|+..|. ++.++|.
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r   37 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGA-RVAIADI   37 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            47888999998 58999999999999997 5888873

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=93.31  E-value=0.063  Score=40.44  Aligned_cols=84  Identities=21%  Similarity=0.323  Sum_probs=53.5

Q ss_pred             hCCcEEEECCcHHH-HHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           11 KGAKVLMVGAGGIG-CELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        11 ~~~~VlvvG~GgiG-~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      +.++|.++|.||+| +.+|+.|...|.. ++--|..        ..              ...+.+.+.  .+.+.... 
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~-VsGSD~~--------~~--------------~~~~~L~~~--Gi~v~~g~-   60 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQ-ISGSDIA--------DG--------------VVTQRLAQA--GAKIYIGH-   60 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCE-EEEEESC--------CS--------------HHHHHHHHT--TCEEEESC-
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCE-EEEEeCC--------CC--------------hhhhHHHHC--CCeEEECC-
Confidence            46789999999999 7779999999984 6665521        11              122344443  34554321 


Q ss_pred             CCCCCcchHhhhccCcEEEEcc----CChHHHHHHHHHHHHCCCcEE
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGL----DNLDARRHVNRLCLAADVPLV  132 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~----Dn~~~r~~i~~~c~~~~~p~i  132 (410)
                             ..+.+.+.|+||...    ||++.     ..|++.++|++
T Consensus        61 -------~~~~i~~~d~vV~S~AI~~~npel-----~~A~~~gipii   95 (96)
T d1p3da1          61 -------AEEHIEGASVVVVSSAIKDDNPEL-----VTSKQKRIPVI   95 (96)
T ss_dssp             -------CGGGGTTCSEEEECTTSCTTCHHH-----HHHHHTTCCEE
T ss_pred             -------ccccCCCCCEEEECCCcCCCCHHH-----HHHHHcCCCEE
Confidence                   123356789988853    45443     35788899986

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=93.26  E-value=0.038  Score=46.77  Aligned_cols=37  Identities=32%  Similarity=0.441  Sum_probs=32.7

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      .|.+++|.|+|.|.||.++++.|...|+ ++...|.+.
T Consensus        39 ~l~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~~   75 (181)
T d1qp8a1          39 LIQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTP   75 (181)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             cccCceEEEeccccccccceeeeecccc-ccccccccc
Confidence            3789999999999999999999999998 588888653

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.26  E-value=0.094  Score=43.25  Aligned_cols=91  Identities=13%  Similarity=0.159  Sum_probs=51.9

Q ss_pred             CcEEEECCcHHHHHHHHHHHHh-----CCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhh-CCCCeEEE
Q 015243           13 AKVLMVGAGGIGCELLKTLALS-----GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKF-RPQMSITA   86 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~-----Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~-np~v~i~~   86 (410)
                      .||.|||+|++|...+-.....     .++++.|+|-                   ...|++.+.+..... .....+..
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Di-------------------d~~k~~~~~d~~~~~~~~~~~~~~   61 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDI-------------------DEEKQKIVVDFVKRLVKDRFKVLI   61 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECS-------------------CHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEec-------------------CcHHHHHHHHHHHhhhccCceEEE
Confidence            4799999998886666433322     2578999883                   233455444444432 22334433


Q ss_pred             EccCCCCCcchHhhhccCcEEEEccCCh--HHHHHHHHHHHHCCC
Q 015243           87 HHANVKDPKFNVEFFKQFNVVLNGLDNL--DARRHVNRLCLAADV  129 (410)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~DvVi~a~Dn~--~~r~~i~~~c~~~~~  129 (410)
                      ..       ...+-++++|+||.+..-.  +.+.....+-.++++
T Consensus        62 t~-------~~~~~l~~aDvVVita~~~~~~~~~r~~~i~~~~~i   99 (162)
T d1up7a1          62 SD-------TFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGL   99 (162)
T ss_dssp             CS-------SHHHHHTTCSEEEECCCTTHHHHHHHHHHGGGGGTC
T ss_pred             ec-------CcccccCCCCEEEEecccCCCCCcchHhhhhhhcCe
Confidence            21       1346679999999986543  334444444444444

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.23  E-value=0.045  Score=45.06  Aligned_cols=35  Identities=29%  Similarity=0.500  Sum_probs=29.6

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCC-cEEEEeCC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMD   45 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~-~i~liD~D   45 (410)
                      .+.+|+|||.|.+|+|++..|.+.|.. .+++++..
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~   37 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDA   37 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCc
Confidence            367999999999999999999999986 56666554

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.18  E-value=0.038  Score=48.32  Aligned_cols=41  Identities=27%  Similarity=0.423  Sum_probs=37.3

Q ss_pred             HHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccC
Q 015243            8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE   48 (410)
Q Consensus         8 ~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve   48 (410)
                      ++|++.||+++|+|+.|+-+++.|...|.+++.++|.+-+=
T Consensus        22 ~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi   62 (222)
T d1vl6a1          22 KKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGIL   62 (222)
T ss_dssp             CCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEEC
T ss_pred             CChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEE
Confidence            46889999999999999999999999999999999976543

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=93.11  E-value=0.24  Score=44.61  Aligned_cols=108  Identities=16%  Similarity=0.309  Sum_probs=64.0

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCC-----CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEE
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGF-----QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA   86 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv-----~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~   86 (410)
                      +||+|.| .|-||+++++.|+..|.     .++..+|.-.....-.                     .+.......+++.
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~---------------------~~~~~~~~~~~~~   59 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRA---------------------NLAPVDADPRLRF   59 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGG---------------------GGGGGTTCTTEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHh---------------------HhhhhhcCCCeEE
Confidence            4799997 78899999999999874     3566666433221110                     1111222334555


Q ss_pred             EccCCCCCcchHhhhccCcEEEEcc-C----------------ChHHHHHHHHHHHHCCC-cEEEecccCccc
Q 015243           87 HHANVKDPKFNVEFFKQFNVVLNGL-D----------------NLDARRHVNRLCLAADV-PLVESGTTGFLG  141 (410)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~DvVi~a~-D----------------n~~~r~~i~~~c~~~~~-p~i~~g~~G~~G  141 (410)
                      +..+..............|+|+.+. .                |...-..+-+.|.++++ .+|.+++...+|
T Consensus        60 ~~~d~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg  132 (322)
T d1r6da_          60 VHGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYG  132 (322)
T ss_dssp             EECCTTCHHHHHHHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGC
T ss_pred             EEeccccchhhhccccccceEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeec
Confidence            5555544434445567778877643 1                12222445667777776 488888776665

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=93.06  E-value=0.078  Score=47.01  Aligned_cols=35  Identities=20%  Similarity=0.457  Sum_probs=29.7

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      |+++.++|.| .+|||.++++.|+..|. ++.++|.+
T Consensus         7 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~   42 (260)
T d1h5qa_           7 FVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRS   42 (260)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            5678888887 67899999999999998 58888854

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.97  E-value=0.13  Score=45.68  Aligned_cols=61  Identities=21%  Similarity=0.248  Sum_probs=43.2

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      |+++.++|.| .+|||-++++.|+..|. ++.++|.+                   ..+.+.+++.+.+...  ++..+.
T Consensus         6 LkgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~~~~~~~--~~~~~~   63 (259)
T d1xq1a_           6 LKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARN-------------------EYELNECLSKWQKKGF--QVTGSV   63 (259)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC--CEEEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--ceEEEe
Confidence            5788888887 67999999999999997 58888743                   2345555555555433  555565


Q ss_pred             cCCC
Q 015243           89 ANVK   92 (410)
Q Consensus        89 ~~i~   92 (410)
                      .+++
T Consensus        64 ~Dv~   67 (259)
T d1xq1a_          64 CDAS   67 (259)
T ss_dssp             CCTT
T ss_pred             ccCC
Confidence            5554

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.87  E-value=0.13  Score=45.30  Aligned_cols=35  Identities=23%  Similarity=0.492  Sum_probs=30.6

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ||+++.++|-| .+|||.++++.|+..|.. +.++|.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~-V~~~~r   38 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAK-VVFGDI   38 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            57889999988 589999999999999984 888874

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=92.87  E-value=0.047  Score=47.02  Aligned_cols=37  Identities=32%  Similarity=0.548  Sum_probs=32.5

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      .|++++|.|-|.|.+|..+++.|...| .++++.|.|.
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~G-akvvv~d~d~   60 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAG-AQLLVADTDT   60 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEecchH
Confidence            377899999999999999999999999 5688888653

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.79  E-value=0.14  Score=44.19  Aligned_cols=33  Identities=39%  Similarity=0.661  Sum_probs=29.8

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ..++|+|||+|..|...|..|++.|.. ++|+|.
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~-v~l~E~   80 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYT-VHLTDT   80 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccc-eeeEee
Confidence            468999999999999999999999974 899884

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.77  E-value=0.19  Score=44.58  Aligned_cols=61  Identities=21%  Similarity=0.303  Sum_probs=45.2

Q ss_pred             CCcEEEE--CCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           12 GAKVLMV--GAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        12 ~~~Vlvv--G~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      .+||.||  |.+|||-++++.|+..|-.++.+.+.+                   ..|.+.+++.|++..+.+  ..+..
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~-------------------~~~~~~~~~~l~~~~~~~--~~~~~   60 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARD-------------------VTRGQAAVQQLQAEGLSP--RFHQL   60 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESS-------------------HHHHHHHHHHHHHTTCCC--EEEEC
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECC-------------------HHHHHHHHHHHHhcCCcE--EEEEE
Confidence            5799888  688999999999999865678887632                   356777888888877654  34555


Q ss_pred             CCCC
Q 015243           90 NVKD   93 (410)
Q Consensus        90 ~i~~   93 (410)
                      ++++
T Consensus        61 Dvs~   64 (275)
T d1wmaa1          61 DIDD   64 (275)
T ss_dssp             CTTC
T ss_pred             ecCC
Confidence            5543

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=92.75  E-value=0.1  Score=42.46  Aligned_cols=47  Identities=17%  Similarity=0.202  Sum_probs=33.4

Q ss_pred             cCcEEEE-ccCChHHHHHHHHHHHHCCCcEEEecccCc-----cceEEEEeCC
Q 015243          103 QFNVVLN-GLDNLDARRHVNRLCLAADVPLVESGTTGF-----LGQVTVHVKG  149 (410)
Q Consensus       103 ~~DvVi~-a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~-----~G~v~~~~~~  149 (410)
                      .-.++++ ++-+++.-..+.+.+.++++.++++...|.     .|....+..+
T Consensus        81 ~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldapVsGg~~~A~~G~L~~~vgG  133 (156)
T d2cvza2          81 EGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGG  133 (156)
T ss_dssp             TTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEES
T ss_pred             ccccccccccCCHHHHHHHHHHHHHcCCeEEeccccCchhhhccCCEEEEEeC
Confidence            3456666 566677777888999999999999987764     3555555444

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=92.71  E-value=0.23  Score=43.79  Aligned_cols=61  Identities=18%  Similarity=0.284  Sum_probs=42.5

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      |+++.++|-| .+|||.++++.|+..|. ++.+.|.+                   +.+.+.+.+.+.+..  .++..+.
T Consensus         6 L~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~~~~~g--~~~~~~~   63 (259)
T d2ae2a_           6 LEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRN-------------------QKELNDCLTQWRSKG--FKVEASV   63 (259)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTT--CEEEEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcC--CCceEEE
Confidence            6788888888 56999999999999997 58887732                   334555555555543  3455555


Q ss_pred             cCCC
Q 015243           89 ANVK   92 (410)
Q Consensus        89 ~~i~   92 (410)
                      .+++
T Consensus        64 ~Dv~   67 (259)
T d2ae2a_          64 CDLS   67 (259)
T ss_dssp             CCTT
T ss_pred             eeCC
Confidence            5554

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=92.64  E-value=0.05  Score=47.82  Aligned_cols=34  Identities=21%  Similarity=0.365  Sum_probs=30.8

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccC
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE   48 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve   48 (410)
                      .|+|||+|..|+.+|..|++.|. +++|+|.+.+.
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~-~V~vlE~~~~~   39 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENK-NTALFESGTMG   39 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSTT
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCC
Confidence            59999999999999999999995 69999988754

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=92.62  E-value=0.25  Score=43.41  Aligned_cols=76  Identities=16%  Similarity=0.310  Sum_probs=49.3

Q ss_pred             CcEEEE-C-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           13 AKVLMV-G-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        13 ~~Vlvv-G-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      -||.|| | .+|||.++++.|+..|.. +.++|.+                   +.+.+.+++.+++..  .++..+..+
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~-V~i~~r~-------------------~~~l~~~~~~l~~~g--~~~~~~~~D   59 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLR-VFVCARG-------------------EEGLRTTLKELREAG--VEADGRTCD   59 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESC-------------------HHHHHHHHHHHHHTT--CCEEEEECC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECC-------------------HHHHHHHHHHHHhcC--CcEEEEEee
Confidence            356554 5 779999999999999975 8887732                   346666777777654  356667667


Q ss_pred             CCCCcchHh-------hhccCcEEEEc
Q 015243           91 VKDPKFNVE-------FFKQFNVVLNG  110 (410)
Q Consensus        91 i~~~~~~~~-------~~~~~DvVi~a  110 (410)
                      +++...-..       -+.+.|++|++
T Consensus        60 vs~~~~v~~~~~~~~~~~g~iDilVnn   86 (257)
T d2rhca1          60 VRSVPEIEALVAAVVERYGPVDVLVNN   86 (257)
T ss_dssp             TTCHHHHHHHHHHHHHHTCSCSEEEEC
T ss_pred             cCCHHHHHHHHHHHHHHhCCCCEEEec
Confidence            754321111       23456666664

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=92.62  E-value=0.049  Score=47.35  Aligned_cols=32  Identities=19%  Similarity=0.294  Sum_probs=29.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ..||+|||+|..|..+|..|++.|+ +++|+|.
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~-~v~v~Er   35 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGV-DVDVYER   35 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeC
Confidence            4689999999999999999999998 6999985

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.61  E-value=0.051  Score=47.41  Aligned_cols=33  Identities=21%  Similarity=0.376  Sum_probs=30.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .+|+|||+|..|+.+|..|.+.|+..++|++..
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~   34 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESS   34 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            379999999999999999999999999999854

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=92.59  E-value=0.068  Score=44.29  Aligned_cols=34  Identities=26%  Similarity=0.411  Sum_probs=28.6

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCC-cEEEEeC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDM   44 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~-~i~liD~   44 (410)
                      ++++|+|||.|.+|+|++..|.+.|.. .++++..
T Consensus         2 m~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~   36 (183)
T d1d7ya1           2 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGD   36 (183)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEES
T ss_pred             CCCCEEEECccHHHHHHHHHHHhcCCceEEEEEec
Confidence            367899999999999999999999976 5666543

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.43  E-value=0.23  Score=43.71  Aligned_cols=35  Identities=29%  Similarity=0.507  Sum_probs=31.0

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ||+++.++|-| .+|||.++++.|+..|. ++.+.|.
T Consensus         3 rl~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r   38 (250)
T d1ydea1           3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDK   38 (250)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            78899999998 58999999999999997 4888874

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.41  E-value=0.35  Score=43.75  Aligned_cols=111  Identities=19%  Similarity=0.170  Sum_probs=60.6

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHH-hhCCCCeEEEEccC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVL-KFRPQMSITAHHAN   90 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~-~~np~v~i~~~~~~   90 (410)
                      ++|||.| .|-+|+++++.|...|- ++..+|.       +++..        ....+.+..... ...+  .++....+
T Consensus        17 k~iLVTG~tGfIGs~lv~~L~~~g~-~V~~~d~-------~~~~~--------~~~~~~~~~~~~~~~~~--~~~~~~~d   78 (341)
T d1sb8a_          17 KVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDN-------FATGH--------QRNLDEVRSLVSEKQWS--NFKFIQGD   78 (341)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC-------CSSCC--------HHHHHHHHHHSCHHHHT--TEEEEECC
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCcC-EEEEEEC-------CCCcc--------hhhHHHHHHhhhhcccC--CeeEEeec
Confidence            6788876 89999999999999997 4777773       11111        011111111111 1112  34444444


Q ss_pred             CCCCcchHhhhccCcEEEEccC--C---------------hHHHHHHHHHHHHCCC-cEEEecccCccc
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLD--N---------------LDARRHVNRLCLAADV-PLVESGTTGFLG  141 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~D--n---------------~~~r~~i~~~c~~~~~-p~i~~g~~G~~G  141 (410)
                      ..+...........+.|+.+..  .               ...-..+-+.|.++++ .+|..++...+|
T Consensus        79 ~~d~~~~~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg  147 (341)
T d1sb8a_          79 IRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYG  147 (341)
T ss_dssp             TTSHHHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGT
T ss_pred             cccccccccccccccccccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeC
Confidence            4333223334455666665321  1               1122335567888887 788888777666

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.36  E-value=0.12  Score=42.99  Aligned_cols=91  Identities=12%  Similarity=0.155  Sum_probs=54.2

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEE-EEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIH-IIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~-liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      .||.|||+|.+|...++.|...+--+++ +.|                   ....|++.+++.. .+.+..++  + .++
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d-------------------~~~~~~~~~~~~~-~~~~~~~~--~-~~~   58 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVAS-------------------RSLEKAKAFATAN-NYPESTKI--H-GSY   58 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEEC-------------------SSHHHHHHHHHHT-TCCTTCEE--E-SSH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEe-------------------CCccccccchhcc-ccccceee--c-CcH
Confidence            4899999999999999999876422222 333                   2233443333221 11122232  1 111


Q ss_pred             CCCcchHhhh--ccCcEEEEccCChHHHHHHHHHHHHCCCcEEE
Q 015243           92 KDPKFNVEFF--KQFNVVLNGLDNLDARRHVNRLCLAADVPLVE  133 (410)
Q Consensus        92 ~~~~~~~~~~--~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~  133 (410)
                            .+++  .+.|+|+.|+.+ ..+..+...|.+++++++-
T Consensus        59 ------~~ll~~~~iD~v~I~tp~-~~h~~~~~~~l~~g~~v~~   95 (184)
T d1ydwa1          59 ------ESLLEDPEIDALYVPLPT-SLHVEWAIKAAEKGKHILL   95 (184)
T ss_dssp             ------HHHHHCTTCCEEEECCCG-GGHHHHHHHHHTTTCEEEE
T ss_pred             ------HHhhhccccceeeecccc-hhhcchhhhhhhccceeec
Confidence                  2333  468999999865 5667778888888887653

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.32  E-value=0.43  Score=43.12  Aligned_cols=33  Identities=36%  Similarity=0.467  Sum_probs=27.8

Q ss_pred             hCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +++||||.| .|=+|+++++.|...|- .++.+|.
T Consensus         1 M~kKILITG~tGfIGs~lv~~Ll~~g~-~V~~ld~   34 (346)
T d1ek6a_           1 MAEKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDN   34 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCcC-EEEEEEC
Confidence            357999997 78899999999999995 5777773

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=92.32  E-value=0.069  Score=44.56  Aligned_cols=34  Identities=24%  Similarity=0.311  Sum_probs=30.7

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ...+|+|+|+|++|...+..+-..|.++++++|.
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~   61 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAG   61 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEES
T ss_pred             CCCEEEEECCCccchhheeccccccccccccccc
Confidence            3578999999999999999999999999999984

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=92.31  E-value=0.13  Score=45.39  Aligned_cols=64  Identities=20%  Similarity=0.352  Sum_probs=41.2

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      |+++.++|.| .+|||.++++.|+..|. ++.++|...                  ..+.+.+++.+.+.. ..++..+.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~------------------~~~~~~~~~~~~~~~-g~~~~~~~   61 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGD------------------AAEIEKVRAGLAAQH-GVKVLYDG   61 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSC------------------HHHHHHHHHHHHHHH-TSCEEEEC
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCc------------------HHHHHHHHHHHHHhc-CCcEEEEE
Confidence            4566666666 77899999999999997 588876321                  123444555544433 34566666


Q ss_pred             cCCCC
Q 015243           89 ANVKD   93 (410)
Q Consensus        89 ~~i~~   93 (410)
                      .++++
T Consensus        62 ~Dv~~   66 (260)
T d1x1ta1          62 ADLSK   66 (260)
T ss_dssp             CCTTS
T ss_pred             CCCCC
Confidence            66644

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.26  E-value=0.45  Score=38.31  Aligned_cols=92  Identities=10%  Similarity=0.084  Sum_probs=52.5

Q ss_pred             CcEEEECC-cHHHHHHHHHHHH-hC--CCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           13 AKVLMVGA-GGIGCELLKTLAL-SG--FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        13 ~~VlvvG~-GgiG~ev~knLa~-~G--v~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      ++|.|||+ |-+|.+++..|.. ..  +..+...-...               ..|+.        +........+.   
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~---------------s~g~~--------~~~~~~~~~~~---   55 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQ---------------LGQAA--------PSFGGTTGTLQ---   55 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSS---------------TTSBC--------CGGGTCCCBCE---
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccc---------------ccccc--------ccccCCceeee---
Confidence            47999996 8899999976553 33  34455443221               12221        00111111110   


Q ss_pred             cCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHC-CCcEEEec
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA-DVPLVESG  135 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~-~~p~i~~g  135 (410)
                           ...+..-++++|+|+.|+.+..++.+..+++... +.++|+.+
T Consensus        56 -----~~~~~~~~~~~DivF~a~~~~~s~~~~~~~~~~g~~~~VID~S   98 (146)
T d1t4ba1          56 -----DAFDLEALKALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAA   98 (146)
T ss_dssp             -----ETTCHHHHHTCSEEEECSCHHHHHHHHHHHHHTTCCCEEEECS
T ss_pred             -----cccchhhhhcCcEEEEecCchHHHHhhHHHHhcCCCeecccCC
Confidence                 0112344789999999999877877777666542 24677754

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=92.25  E-value=0.085  Score=40.73  Aligned_cols=32  Identities=19%  Similarity=0.217  Sum_probs=27.0

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCC--CcEEEEeC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGF--QDIHIIDM   44 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv--~~i~liD~   44 (410)
                      ++++|||.|.+|+|+|..|+..+-  .++++++.
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~   52 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYR   52 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEES
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceecc
Confidence            689999999999999999887643  36888874

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.25  E-value=0.43  Score=38.37  Aligned_cols=75  Identities=20%  Similarity=0.256  Sum_probs=46.0

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHh-CC-CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           13 AKVLMVG-AGGIGCELLKTLALS-GF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~-Gv-~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      .||.|+| +|.+|+.++-.|+.. |. .+|.|+|-+                    ++++..+--+..............
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~--------------------~~~~g~a~Dl~h~~~~~~~~~~~~   60 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA--------------------PVTPGVAVDLSHIPTAVKIKGFSG   60 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS--------------------TTHHHHHHHHHTSCSSCEEEEECS
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc--------------------ccchhHHHHHHCCccccCCcEEEc
Confidence            4899999 599999999888754 64 679998721                    112222334445443444443321


Q ss_pred             CCCCCcchHhhhccCcEEEEccC
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                         ..  +.+-+++.|+||.+..
T Consensus        61 ---~~--~~~~~~~aDvvvitaG   78 (145)
T d2cmda1          61 ---ED--ATPALEGADVVLISAG   78 (145)
T ss_dssp             ---SC--CHHHHTTCSEEEECCS
T ss_pred             ---CC--CccccCCCCEEEECCC
Confidence               11  2344789999999754

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=92.24  E-value=0.32  Score=39.50  Aligned_cols=87  Identities=20%  Similarity=0.175  Sum_probs=53.1

Q ss_pred             CcEEEECCcHHHHH-HHHHHHHh-CCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           13 AKVLMVGAGGIGCE-LLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        13 ~~VlvvG~GgiG~e-v~knLa~~-Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      .||.|||+|.+|.. .+..|... |+.-+.+.|.+.                   .|++..++   +.+  +.       
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~-------------------~~~~~~~~---~~~--~~-------   50 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTR-------------------AKALPICE---SWR--IP-------   50 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSC-------------------TTHHHHHH---HHT--CC-------
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechh-------------------Hhhhhhhh---ccc--cc-------
Confidence            58999999999987 46666654 444444555321                   23333333   222  11       


Q ss_pred             CCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEE
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVE  133 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~  133 (410)
                      ..+  ..+++.++.|+|+.|+.+ ..+..+...+.+++++++.
T Consensus        51 ~~~--~~~~l~~~~D~V~I~tp~-~~h~~~~~~al~~gk~V~~   90 (164)
T d1tlta1          51 YAD--SLSSLAASCDAVFVHSST-ASHFDVVSTLLNAGVHVCV   90 (164)
T ss_dssp             BCS--SHHHHHTTCSEEEECSCT-THHHHHHHHHHHTTCEEEE
T ss_pred             ccc--cchhhhhhcccccccccc-hhccccccccccccceeec
Confidence            111  123456789999999864 4666677778888887764

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=92.17  E-value=0.45  Score=41.22  Aligned_cols=106  Identities=18%  Similarity=0.255  Sum_probs=59.2

Q ss_pred             hCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           11 KGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        11 ~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      .++||||.|+ |-+|+.+++.|...|. +++.++.+.-..             .-..|.... ..+  ..+.++  ....
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~-~V~~l~R~~~~~-------------~~~~~~~~~-~~~--~~~~~~--~~~~   62 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGH-PTFLLVRESTAS-------------SNSEKAQLL-ESF--KASGAN--IVHG   62 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCCCTT-------------TTHHHHHHH-HHH--HTTTCE--EECC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEECCCccc-------------cchhHHHHH-Hhh--ccCCcE--EEEe
Confidence            3689999995 8999999999999996 467765432110             001122211 111  223344  3445


Q ss_pred             CCCCCcchHhhhccCcEEEEccCCh--HHHHHHHHHHHHC-CCcEEEec
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLDNL--DARRHVNRLCLAA-DVPLVESG  135 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~Dn~--~~r~~i~~~c~~~-~~p~i~~g  135 (410)
                      ++.........+...+.|+.+....  .....+.+.+... .+.++...
T Consensus        63 d~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~a~~~~~~~~~~~~s  111 (307)
T d1qyca_          63 SIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPS  111 (307)
T ss_dssp             CTTCHHHHHHHHHTCSEEEECCCGGGSGGGHHHHHHHHHHCCCSEEECS
T ss_pred             ecccchhhhhhhhhceeeeecccccccchhhHHHHHHHHhccccceeee
Confidence            5554444455678889988875432  2323334444444 33444443

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.09  E-value=0.13  Score=45.23  Aligned_cols=36  Identities=22%  Similarity=0.416  Sum_probs=31.3

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ||++++++|.| .+|||.++++.|+..|. ++.++|.+
T Consensus         3 ~l~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~   39 (245)
T d2ag5a1           3 RLDGKVIILTAAAQGIGQAAALAFAREGA-KVIATDIN   39 (245)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCC
Confidence            57888888887 78999999999999996 58888864

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=92.02  E-value=0.16  Score=41.89  Aligned_cols=101  Identities=17%  Similarity=0.239  Sum_probs=58.0

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        12 ~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      ..||+|+|+ |-+|.++++.+....  .+.|+  ..++..+-    -+-..|+|..        .....+.+.++.   +
T Consensus         4 ~ikI~i~Ga~GrMG~~i~~~i~~~~--~~~lv--~~~~~~~~----~~~g~d~~~~--------~~~~~~~~~~~~---~   64 (162)
T d1diha1           4 NIRVAIAGAGGRMGRQLIQAALALE--GVQLG--AALEREGS----SLLGSDAGEL--------AGAGKTGVTVQS---S   64 (162)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHST--TEECC--CEECCTTC----TTCSCCTTCS--------SSSSCCSCCEES---C
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCC--CCEEE--EEEecccc----hhccchhhhh--------hccccCCceeec---c
Confidence            458999996 999999999888653  12221  11111100    0112233320        000112222211   1


Q ss_pred             CCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCc
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGF  139 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~  139 (410)
                            .+..+..+|+||+-+ .+++-...-++|.++++|++-+ |.|+
T Consensus        65 ------~~~~~~~~DViIDFs-~p~~~~~~~~~a~~~~~~~ViG-TTG~  105 (162)
T d1diha1          65 ------LDAVKDDFDVFIDFT-RPEGTLNHLAFCRQHGKGMVIG-TTGF  105 (162)
T ss_dssp             ------STTTTTSCSEEEECS-CHHHHHHHHHHHHHTTCEEEEC-CCCC
T ss_pred             ------HHHHhcccceEEEec-cHHHHHHHHHHHHhccceeEEe-cCCC
Confidence                  124567899999986 4677777778999999999976 4554

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.01  E-value=0.088  Score=47.82  Aligned_cols=40  Identities=23%  Similarity=0.388  Sum_probs=34.2

Q ss_pred             HHHhCCcEEEECCcHHHHHHHHHHHHhCC----------CcEEEEeCCcc
Q 015243            8 EAIKGAKVLMVGAGGIGCELLKTLALSGF----------QDIHIIDMDTI   47 (410)
Q Consensus         8 ~~L~~~~VlvvG~GgiG~ev~knLa~~Gv----------~~i~liD~D~V   47 (410)
                      ++|.+.||++.|+|+-|.-+++.|+.+++          ++|.++|.+-+
T Consensus        21 k~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Gl   70 (294)
T d1pj3a1          21 KPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGL   70 (294)
T ss_dssp             CCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEE
T ss_pred             CCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCC
Confidence            46889999999999999999999887765          47999998664

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.98  E-value=0.066  Score=45.73  Aligned_cols=35  Identities=20%  Similarity=0.267  Sum_probs=30.1

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCC-----cEEEEeCCcc
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQ-----DIHIIDMDTI   47 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~-----~i~liD~D~V   47 (410)
                      +||+|||+|-+|+.+|..|++.|..     +.++++.+..
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~~~   40 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFT   40 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESCCT
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccCCC
Confidence            4799999999999999999999975     6788876544

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.98  E-value=0.074  Score=45.37  Aligned_cols=86  Identities=10%  Similarity=0.097  Sum_probs=52.9

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~   92 (410)
                      +||.|+|+|-+|..+|-.|+..|.. ++.+|.|.=-..+|++.-.... +-+.  .+.+.+....-    ......    
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~-V~g~D~n~~~i~~ln~g~~p~~-e~~~--~~~l~~~~~~~----~~~~~~----   68 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHE-VIGVDVSSTKIDLINQGKSPIV-EPGL--EALLQQGRQTG----RLSGTT----   68 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCE-EEEECSCHHHHHHHHTTCCSSC-CTTH--HHHHHHHHHTT----CEEEES----
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCc-EEEEeCCHHHHHHhcccCCccc-chhh--hhhhhhhhccc----ccccCC----
Confidence            4799999999999999999999964 8899988655555654432111 1111  12222222221    222211    


Q ss_pred             CCcchHhhhccCcEEEEccCC
Q 015243           93 DPKFNVEFFKQFNVVLNGLDN  113 (410)
Q Consensus        93 ~~~~~~~~~~~~DvVi~a~Dn  113 (410)
                         ...+.++.+|+++.|++.
T Consensus        69 ---~~~~~i~~~d~i~i~VpT   86 (202)
T d1mv8a2          69 ---DFKKAVLDSDVSFICVGT   86 (202)
T ss_dssp             ---CHHHHHHTCSEEEECCCC
T ss_pred             ---CHHHHHhhCCEEEEecCc
Confidence               123456789999999865

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=91.91  E-value=0.084  Score=44.32  Aligned_cols=33  Identities=21%  Similarity=0.263  Sum_probs=29.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCC-cEEEEeCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~-~i~liD~D   45 (410)
                      +||+|||+|.+|.|+|..|.+.|-+ +|++++.+
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~   34 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKG   34 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            5899999999999999999999875 69998754

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.89  E-value=0.065  Score=43.94  Aligned_cols=48  Identities=23%  Similarity=0.316  Sum_probs=37.1

Q ss_pred             CcEEEE-CCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC
Q 015243           13 AKVLMV-GAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP   80 (410)
Q Consensus        13 ~~Vlvv-G~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np   80 (410)
                      +||.|+ |+|++|..+++.|+..|.. +++.+.|                   ..|++.+.+.+....+
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~-V~l~~R~-------------------~e~~~~l~~~i~~~~~   49 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHE-IVVGSRR-------------------EEKAEAKAAEYRRIAG   49 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCE-EEEEESS-------------------HHHHHHHHHHHHHHHS
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCE-EEEEECC-------------------HHHHHHHHHHHHhcCC
Confidence            479999 7999999999999999976 7776522                   3567777777766544

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=91.89  E-value=0.45  Score=40.29  Aligned_cols=108  Identities=14%  Similarity=0.235  Sum_probs=64.3

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCC--cEEEEeCCccCcccCc--cccCCCCCC---CC-chHHHHHHHHHHhhCCCCeE
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMDTIEVSNLN--RQFLFRQSH---VG-QSKAKVARDAVLKFRPQMSI   84 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~--~i~liD~D~Ve~sNL~--Rq~lf~~~d---iG-~~Ka~~a~~~l~~~np~v~i   84 (410)
                      .||.|||+||-||.++..|...|+.  ++..+|.|.-..++..  .-.+...+.   .| ....+..++...+-.     
T Consensus         1 ~kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~~~a~~ki~iG~~~t~G~G~g~~p~~g~~aa~e~~-----   75 (194)
T d1w5fa1           1 LKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLEASNADVKIQIGENITRGLGAGGRPEIGEQAALESE-----   75 (194)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHHHHTCCCSEEEECCTTTTTTSCCTTCHHHHHHHHHHTH-----
T ss_pred             CeEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHHHHhcCCcceEEecccccCCCcccccCchhhHhHHHHHH-----
Confidence            3799999999999999999999986  5677888876655422  111222211   11 112222222222210     


Q ss_pred             EEEccCCCCCcchHhhhccCcEEEEcc--CC---hHHHHHHHHHHHHCCCcEEEec
Q 015243           85 TAHHANVKDPKFNVEFFKQFNVVLNGL--DN---LDARRHVNRLCLAADVPLVESG  135 (410)
Q Consensus        85 ~~~~~~i~~~~~~~~~~~~~DvVi~a~--Dn---~~~r~~i~~~c~~~~~p~i~~g  135 (410)
                                ..-.+.+++.|+|+.+.  .-   --+--.+.++|++.+++.+...
T Consensus        76 ----------~~I~~~l~~~d~vfi~AGlGGgTGtgaapviA~~ake~g~lvv~iv  121 (194)
T d1w5fa1          76 ----------EKIREVLQDTHMVFITAGFGGGTGTGASPVIAKIAKEMGILTVAIV  121 (194)
T ss_dssp             ----------HHHHHHTTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ----------HHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHHHcCCceEEEE
Confidence                      00124456788877642  21   2356688999999988766543

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.78  E-value=0.18  Score=42.86  Aligned_cols=95  Identities=12%  Similarity=0.120  Sum_probs=53.0

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCC------cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhh-CCCCeEE
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQ------DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKF-RPQMSIT   85 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~------~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~-np~v~i~   85 (410)
                      .||+|||+|.-|-..|..|++.|..      +++|+|... .+--+.|.-...  + ......+.......+ .+.+++.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~-~~GG~~~~gi~p--~-~~~~~~~~~~~~~~~~~~g~~~~   78 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP-TPWGLVRSGVAP--D-HPKIKSISKQFEKTAEDPRFRFF   78 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS-SCSTHHHHTSCT--T-CTGGGGGHHHHHHHHTSTTEEEE
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC-CCCCeeeeccCc--c-cccchhhhhhhhhhhccCCceEE
Confidence            4899999999999999999999952      689998643 122222221111  0 111122233333332 2333433


Q ss_pred             EEccCCCCCcchHhhhccCcEEEEccC
Q 015243           86 AHHANVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        86 ~~~~~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                      .. ..+.......++...||.|+.++.
T Consensus        79 ~~-~~v~~~~~~~~~~~~~~~v~~atG  104 (239)
T d1lqta2          79 GN-VVVGEHVQPGELSERYDAVIYAVG  104 (239)
T ss_dssp             ES-CCBTTTBCHHHHHHHSSEEEECCC
T ss_pred             EE-EEeccccchhhhhccccceeeecC
Confidence            22 233333334566677888887765

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.78  E-value=0.084  Score=43.38  Aligned_cols=34  Identities=26%  Similarity=0.370  Sum_probs=29.8

Q ss_pred             CCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        12 ~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ..+|+|+|+ |++|...+..+...|..+++++|.+
T Consensus        28 g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~   62 (170)
T d1jvba2          28 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVR   62 (170)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred             CCEEEEEeccccceeeeeecccccccccccccccc
Confidence            457999995 9999999999999999999998844

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=91.72  E-value=0.87  Score=41.07  Aligned_cols=80  Identities=20%  Similarity=0.118  Sum_probs=48.7

Q ss_pred             CCcEEEECCcH-HHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           12 GAKVLMVGAGG-IGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        12 ~~~VlvvG~Gg-iG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      +++|||.|+.| ||+.+++.|...|..-+.+++       |             ..|..-+.+......+.-.......+
T Consensus        11 gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR-------~-------------~~~~~~~~~~~~~~~~~~~~~~~~~D   70 (342)
T d1y1pa1          11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTAR-------S-------------ASKLANLQKRWDAKYPGRFETAVVED   70 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES-------S-------------HHHHHHHHHHHHHHSTTTEEEEECSC
T ss_pred             cCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeC-------C-------------chhHHHHHHhhhccccccccEEEecc
Confidence            68999999655 999999999999965333321       1             12333333333334444444445566


Q ss_pred             CCCCcchHhhhccCcEEEEcc
Q 015243           91 VKDPKFNVEFFKQFNVVLNGL  111 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~  111 (410)
                      +.+...-...+.++|.|+.+.
T Consensus        71 l~~~~~~~~~~~~~~~v~~~a   91 (342)
T d1y1pa1          71 MLKQGAYDEVIKGAAGVAHIA   91 (342)
T ss_dssp             TTSTTTTTTTTTTCSEEEECC
T ss_pred             ccchhhhhhhcccchhhhhhc
Confidence            644433345678889988754

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=91.66  E-value=0.26  Score=40.38  Aligned_cols=34  Identities=21%  Similarity=0.424  Sum_probs=30.4

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +.+|+|+|+||+|.-.+..+...|..+++.+|..
T Consensus        29 g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~   62 (175)
T d1cdoa2          29 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLN   62 (175)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCEEEEEecCCccchHHHHHHHHhhchheeecch
Confidence            4679999999999999999999999999998743

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=91.60  E-value=0.065  Score=45.72  Aligned_cols=35  Identities=23%  Similarity=0.429  Sum_probs=29.9

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .|.+++|.|||+|.||.++++.|...|+. +...|+
T Consensus        46 eL~gktvgIiG~G~IG~~va~~l~~fg~~-v~~~d~   80 (193)
T d1mx3a1          46 RIRGETLGIIGLGRVGQAVALRAKAFGFN-VLFYDP   80 (193)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECT
T ss_pred             eeeCceEEEeccccccccceeeeeccccc-eeeccC
Confidence            37889999999999999999999888866 666664

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=91.53  E-value=0.073  Score=48.66  Aligned_cols=32  Identities=47%  Similarity=0.700  Sum_probs=29.2

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      ++++|+|||+|-.|+.+|..|+..|. +++|+|
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~-~V~viE   32 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGH-QVHIID   32 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCC-CEEEEE
Confidence            47899999999999999999999985 688887

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=91.51  E-value=0.076  Score=45.44  Aligned_cols=35  Identities=23%  Similarity=0.258  Sum_probs=30.5

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .|.+++|.|+|.|.||.++++.|...|+. +..+|.
T Consensus        42 ~l~~ktvgIiG~G~IG~~va~~l~~fg~~-v~~~d~   76 (199)
T d1dxya1          42 ELGQQTVGVMGTGHIGQVAIKLFKGFGAK-VIAYDP   76 (199)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             cccceeeeeeeccccccccccccccccee-eeccCC
Confidence            47889999999999999999999988876 666664

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=91.51  E-value=0.11  Score=44.23  Aligned_cols=33  Identities=27%  Similarity=0.426  Sum_probs=29.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ..+|+|+|+|++|.-.+..+...|.+++.++|.
T Consensus        26 G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~   58 (195)
T d1kola2          26 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDL   58 (195)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhcccceeeecc
Confidence            568999999999998888888899999999984

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.43  E-value=0.56  Score=42.66  Aligned_cols=33  Identities=21%  Similarity=0.328  Sum_probs=28.2

Q ss_pred             hCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +|+||||.| .|=||+.+++.|...|- .++.+|.
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~-~V~~~d~   47 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGH-YVIASDW   47 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeC
Confidence            589999997 78899999999999985 5777773

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=91.41  E-value=0.15  Score=42.04  Aligned_cols=85  Identities=13%  Similarity=0.105  Sum_probs=50.1

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHh-CCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~-Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      ++.||.|+|+|.+|...++.|... ++.-+.++|.+.-              ...                ...+.... 
T Consensus         2 ~kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~--------------~~~----------------~~~~~~~~-   50 (170)
T d1f06a1           2 TNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRAT--------------LDT----------------KTPVFDVA-   50 (170)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSC--------------CSS----------------SSCEEEGG-
T ss_pred             CcceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccc--------------ccc----------------ccccccch-
Confidence            456899999999999999988763 3333334443210              000                01111111 


Q ss_pred             CCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEE
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVE  133 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~  133 (410)
                      .      ......+.|+|+.|+.+. ....+...|.+.|+.++.
T Consensus        51 ~------~~~~~~~~D~Vvi~tp~~-~h~~~a~~aL~aG~~vv~   87 (170)
T d1f06a1          51 D------VDKHADDVDVLFLCMGSA-TDIPEQAPKFAQFACTVD   87 (170)
T ss_dssp             G------GGGTTTTCSEEEECSCTT-THHHHHHHHHTTTSEEEC
T ss_pred             h------hhhhccccceEEEeCCCc-ccHHHHHHHHHCCCcEEE
Confidence            1      123346789999988653 455667777788876553

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=91.33  E-value=0.1  Score=45.87  Aligned_cols=37  Identities=32%  Similarity=0.564  Sum_probs=31.7

Q ss_pred             HHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      |||+++.++|-| .+|||-++++.|+..|. ++.+.|.+
T Consensus         1 qrL~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~   38 (247)
T d2ew8a1           1 QRLKDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLV   38 (247)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            478999999998 57999999999999998 48887743

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.30  E-value=0.39  Score=44.36  Aligned_cols=89  Identities=22%  Similarity=0.234  Sum_probs=51.0

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCC---CCC--CCCchHHHHHHHHHHhhCCCCeEE
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLF---RQS--HVGQSKAKVARDAVLKFRPQMSIT   85 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf---~~~--diG~~Ka~~a~~~l~~~np~v~i~   85 (410)
                      .+||||.| .|=||+++++.|...|. .++.+|       ||.|....   ...  .-.....+.+.+.-...++  +++
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~-~V~~iD-------nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~   70 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNY-EVCIVD-------NLVRRLFDHQLGLESLTPIASIHDRISRWKALTGK--SIE   70 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE-------CCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCC--CCE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEe-------cCCcccccccccccccccccchHHHHHHHHhhcCC--CcE
Confidence            47999998 55599999999999994 588888       44332110   000  0111223333333223334  455


Q ss_pred             EEccCCCCCcchHhhhc--cCcEEEEc
Q 015243           86 AHHANVKDPKFNVEFFK--QFNVVLNG  110 (410)
Q Consensus        86 ~~~~~i~~~~~~~~~~~--~~DvVi~a  110 (410)
                      .+..++++...-...++  ++|+|+..
T Consensus        71 ~~~~Dl~d~~~l~~~~~~~~~d~ViHl   97 (393)
T d1i24a_          71 LYVGDICDFEFLAESFKSFEPDSVVHF   97 (393)
T ss_dssp             EEESCTTSHHHHHHHHHHHCCSEEEEC
T ss_pred             EEEccCCCHHHHHHHHHhhcchheecc
Confidence            56667765443344555  45999984

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=91.29  E-value=0.089  Score=46.58  Aligned_cols=31  Identities=29%  Similarity=0.480  Sum_probs=28.5

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ++|+|||+|..|...|..|++.|. +++|+|.
T Consensus        31 kkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~   61 (370)
T d2iida1          31 KHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEA   61 (370)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-CEEEEeC
Confidence            589999999999999999999997 5999884

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.08  E-value=0.36  Score=43.35  Aligned_cols=101  Identities=16%  Similarity=0.230  Sum_probs=58.6

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCc-cCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDT-IEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~-Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      ++||+|.| .|-+|+.+++.|...|.. ++.+|.-. -...++                       .......+++....
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~~-V~~~d~~~~~~~~~~-----------------------~~~~~~~~~d~~~~   56 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGHE-VTVVDNFFTGRKRNV-----------------------EHWIGHENFELINH   56 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSSCCGGGT-----------------------GGGTTCTTEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEeCCCcCCHHHH-----------------------HHhcCCCceEEEeh
Confidence            47999998 555999999999999864 77776311 000011                       11122233444444


Q ss_pred             CCCCCcchHhhhccCcEEEEcc---------CChH--------HHHHHHHHHHHCCCcEEEecccCccc
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGL---------DNLD--------ARRHVNRLCLAADVPLVESGTTGFLG  141 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~---------Dn~~--------~r~~i~~~c~~~~~p~i~~g~~G~~G  141 (410)
                      +..+     ..+.++|+|+.+.         +++.        .-..+-+.|++.++.+|..++...+|
T Consensus        57 ~~~~-----~~~~~~d~VihlAa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~k~I~~SS~~vy~  120 (312)
T d2b69a1          57 DVVE-----PLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYG  120 (312)
T ss_dssp             CTTS-----CCCCCCSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGGGGB
T ss_pred             HHHH-----HHHcCCCEEEECcccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEChheec
Confidence            4322     2345789998742         1111        11234456777888888887766655

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=91.04  E-value=0.2  Score=44.15  Aligned_cols=35  Identities=31%  Similarity=0.575  Sum_probs=30.4

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ||+++.++|.| .+|||.++++.|+..|.. +.+.|.
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~~   38 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAK-VAFSDI   38 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            68899999987 679999999999999975 888774

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.96  E-value=0.12  Score=41.08  Aligned_cols=33  Identities=21%  Similarity=0.314  Sum_probs=27.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHHH----hCCCcEEEEeCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLAL----SGFQDIHIIDMD   45 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~----~Gv~~i~liD~D   45 (410)
                      .++++|||.|.+|+|++-.|++    .|. ++++++..
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~-~Vt~i~~~   73 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGT-EVIQLFPE   73 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCC-EEEEeccc
Confidence            5689999999999999999975    454 68888753

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.94  E-value=0.4  Score=43.53  Aligned_cols=108  Identities=22%  Similarity=0.246  Sum_probs=60.5

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      +-|||.| .|=||+.+++.|...|. +++.+|       |+.+...         ....-.+.+  .++  +++.+..++
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~-~V~~~d-------~~~~~~~---------~~~~~~~~~--~~~--~v~~~~~Dl   60 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGY-DCVVAD-------NLSNSTY---------DSVARLEVL--TKH--HIPFYEVDL   60 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE-------CCSSCCT---------HHHHHHHHH--HTS--CCCEEECCT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-eEEEEE-------CCCCcch---------hHHHhHHhh--ccc--CCeEEEeec
Confidence            4466776 78899999999999995 477776       3333221         111111111  222  334445566


Q ss_pred             CCCcchHhhhc--cCcEEEEccCC-----------------hHHHHHHHHHHHHCCC-cEEEecccCccc
Q 015243           92 KDPKFNVEFFK--QFNVVLNGLDN-----------------LDARRHVNRLCLAADV-PLVESGTTGFLG  141 (410)
Q Consensus        92 ~~~~~~~~~~~--~~DvVi~a~Dn-----------------~~~r~~i~~~c~~~~~-p~i~~g~~G~~G  141 (410)
                      ++...-...+.  +.|+|+.+...                 ......+.+.|++.++ .++..++...+|
T Consensus        61 ~d~~~l~~~~~~~~~d~VihlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS~~vyg  130 (347)
T d1z45a2          61 CDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYG  130 (347)
T ss_dssp             TCHHHHHHHHHHSCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGC
T ss_pred             CCHHHHHHHHhccCCCEEEEccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecceeeec
Confidence            54322233333  67999874321                 1222445666888776 477777766554

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=90.90  E-value=0.09  Score=45.52  Aligned_cols=31  Identities=26%  Similarity=0.378  Sum_probs=28.1

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .+|+|||+|..|...|..|++.|. +++|++.
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~-~V~vlE~   31 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGT-DAVLLES   31 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTC-CEEEECS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC-CEEEEec
Confidence            479999999999999999999998 4899873

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=90.89  E-value=0.32  Score=42.49  Aligned_cols=64  Identities=22%  Similarity=0.323  Sum_probs=42.1

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      +..|+|.| .||||-++++.|+..|..+|.|+-          |.      .....+++.+.+.+...  ..++..+..+
T Consensus         9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~----------R~------~~~~~~~~~~~~~l~~~--g~~v~~~~~D   70 (259)
T d2fr1a1           9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVS----------RS------GPDADGAGELVAELEAL--GARTTVAACD   70 (259)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEE----------SS------GGGSTTHHHHHHHHHHT--TCEEEEEECC
T ss_pred             cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEe----------CC------ccCHHHHHHHHHHHHhc--cccccccccc
Confidence            35688887 799999999999999999888863          11      11122344445555544  3566666666


Q ss_pred             CCC
Q 015243           91 VKD   93 (410)
Q Consensus        91 i~~   93 (410)
                      +++
T Consensus        71 v~d   73 (259)
T d2fr1a1          71 VTD   73 (259)
T ss_dssp             TTC
T ss_pred             cch
Confidence            643

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.88  E-value=0.16  Score=42.03  Aligned_cols=94  Identities=16%  Similarity=0.154  Sum_probs=54.7

Q ss_pred             CCcEEEECCcHHH--HHHHHHHHHh---CCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHH----HHHHhhCCCC
Q 015243           12 GAKVLMVGAGGIG--CELLKTLALS---GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVAR----DAVLKFRPQM   82 (410)
Q Consensus        12 ~~~VlvvG~GgiG--~ev~knLa~~---Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~----~~l~~~np~v   82 (410)
                      +.||.|||+|++|  +.++-.+...   .+++|.|+|-|.                 ++.|.+++.    ......+.++
T Consensus         1 k~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e-----------------~~~~~~~~d~~~~~~~~~~~~~~   63 (169)
T d1s6ya1           1 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPE-----------------GKEKLEIVGALAKRMVEKAGVPI   63 (169)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGG-----------------GHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CcEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCc-----------------cHHHHHHHHHHHHHHHHhcCCCc
Confidence            3589999999665  4444444432   346888887321                 123333333    2344566677


Q ss_pred             eEEEEccCCCCCcchHhhhccCcEEEEccCCh--HHHHHHHHHHHHCCC
Q 015243           83 SITAHHANVKDPKFNVEFFKQFNVVLNGLDNL--DARRHVNRLCLAADV  129 (410)
Q Consensus        83 ~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~--~~r~~i~~~c~~~~~  129 (410)
                      ++....+.       .+-++++|+||.+..-.  +.+...+.+-.++++
T Consensus        64 ~~~~~td~-------~~al~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi  105 (169)
T d1s6ya1          64 EIHLTLDR-------RRALDGADFVTTQFRVGGLEARAKDERIPLKYGV  105 (169)
T ss_dssp             EEEEESCH-------HHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTC
T ss_pred             eeeecCCc-------hhhcCCCCEEEEccccCCCCCeehhhhhhhhcCc
Confidence            77776443       24468999999986432  334444445555555

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=90.70  E-value=0.26  Score=43.42  Aligned_cols=34  Identities=26%  Similarity=0.592  Sum_probs=29.6

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      |+++.++|.| .+|||.++++.|+..|.. +.+.|.
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r   37 (254)
T d1hdca_           3 LSGKTVIITGGARGLGAEAARQAVAAGAR-VVLADV   37 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            6788899998 569999999999999985 888874

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=90.69  E-value=0.42  Score=35.16  Aligned_cols=84  Identities=18%  Similarity=0.248  Sum_probs=52.5

Q ss_pred             CCcEEEECCcHHHH-HHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           12 GAKVLMVGAGGIGC-ELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        12 ~~~VlvvG~GgiG~-ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      +.||.++|.||+|- .+|+.|...|.. ++--|        +...             + ..+.|++..  +++..  ..
T Consensus         1 ~~~ihfiGIgG~GMs~LA~~L~~~G~~-VsGSD--------~~~~-------------~-~t~~L~~~G--i~i~~--gh   53 (89)
T d1j6ua1           1 HMKIHFVGIGGIGMSAVALHEFSNGND-VYGSN--------IEET-------------E-RTAYLRKLG--IPIFV--PH   53 (89)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEC--------SSCC-------------H-HHHHHHHTT--CCEES--SC
T ss_pred             CcEEEEEeECHHHHHHHHHHHHhCCCe-EEEEe--------CCCC-------------h-hHHHHHHCC--CeEEe--ee
Confidence            47899999999997 778999999973 55544        2111             1 223455553  45432  11


Q ss_pred             CCCCcchHhhhccCcEEEEcc----CChHHHHHHHHHHHHCCCcEEE
Q 015243           91 VKDPKFNVEFFKQFNVVLNGL----DNLDARRHVNRLCLAADVPLVE  133 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~----Dn~~~r~~i~~~c~~~~~p~i~  133 (410)
                            +.+.+.+.|+||...    ||++.     ..+++.++|++.
T Consensus        54 ------~~~~i~~~d~vV~SsAI~~~npel-----~~A~~~gIpv~~   89 (89)
T d1j6ua1          54 ------SADNWYDPDLVIKTPAVRDDNPEI-----VRARMERVPIEN   89 (89)
T ss_dssp             ------CTTSCCCCSEEEECTTCCTTCHHH-----HHHHHTTCCEEE
T ss_pred             ------cccccCCCCEEEEecCcCCCCHHH-----HHHHHcCCCccC
Confidence                  123346789998853    55553     367788999863

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=90.68  E-value=0.61  Score=37.78  Aligned_cols=88  Identities=14%  Similarity=0.166  Sum_probs=51.9

Q ss_pred             CcEEEECCcHHHHH-HHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           13 AKVLMVGAGGIGCE-LLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        13 ~~VlvvG~GgiG~e-v~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      .||.|||+|.+|.. .+..|...+--.+.++|.+.                   .+++.+++.    .+...   ...++
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~-------------------~~~~~~~~~----~~~~~---~~~~~   55 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNP-------------------KVLGTLATR----YRVSA---TCTDY   55 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCH-------------------HHHHHHHHH----TTCCC---CCSST
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCH-------------------HHHHHHHHh----ccccc---ccccH
Confidence            48999999999976 56677666544555655221                   223322222    22111   11122


Q ss_pred             CCCcchHhhh-ccCcEEEEccCChHHHHHHHHHHHHCCCcEEE
Q 015243           92 KDPKFNVEFF-KQFNVVLNGLDNLDARRHVNRLCLAADVPLVE  133 (410)
Q Consensus        92 ~~~~~~~~~~-~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~  133 (410)
                      .      +++ .+.|+|+.|+.+ .....+-..|.+.+++++.
T Consensus        56 ~------~ll~~~iD~V~I~tp~-~~H~~~~~~al~~gk~V~~   91 (167)
T d1xeaa1          56 R------DVLQYGVDAVMIHAAT-DVHSTLAAFFLHLGIPTFV   91 (167)
T ss_dssp             T------GGGGGCCSEEEECSCG-GGHHHHHHHHHHTTCCEEE
T ss_pred             H------Hhcccccceecccccc-ccccccccccccccccccc
Confidence            1      222 368999999864 5666677788888998763

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=90.61  E-value=0.47  Score=42.22  Aligned_cols=30  Identities=33%  Similarity=0.566  Sum_probs=25.4

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      +||||.| +|-||+.+++.|...|. +++.+|
T Consensus         1 ~KILVTGatGfIGs~lv~~Ll~~g~-~V~~id   31 (338)
T d1orra_           1 AKLLITGGCGFLGSNLASFALSQGI-DLIVFD   31 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEE
Confidence            5899998 66699999999999996 477777

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=90.40  E-value=0.2  Score=44.68  Aligned_cols=104  Identities=17%  Similarity=0.246  Sum_probs=56.9

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      ++||||.| .|-||+.+++.|..-|-..+.+.+.+              +-|+..  .+...+.++...|+.-+... ..
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~--------------~~~~~~--~~~~~~~~~~~~~d~v~~~a-~~   64 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD--------------ELNLLD--SRAVHDFFASERIDQVYLAA-AK   64 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT--------------TCCTTC--HHHHHHHHHHHCCSEEEECC-CC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch--------------hccccC--HHHHHHHHhhcCCCEEEEcc-hh
Confidence            57999998 78999999999999885543322111              112322  24445556666665433221 11


Q ss_pred             CCCC----cchHhhhccCcEEEEccCChHHHHHHHHHHHHCCC-cEEEecccCccc
Q 015243           91 VKDP----KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADV-PLVESGTTGFLG  141 (410)
Q Consensus        91 i~~~----~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~-p~i~~g~~G~~G  141 (410)
                      +...    ....+++.         .|...-..+-+.|.++++ .+|..++...+|
T Consensus        65 ~~~~~~~~~~~~~~~~---------~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg  111 (315)
T d1e6ua_          65 VGGIVANNTYPADFIY---------QNMMIESNIIHAAHQNDVNKLLFLGSSCIYP  111 (315)
T ss_dssp             CCCHHHHHHCHHHHHH---------HHHHHHHHHHHHHHHTTCCEEEEECCGGGSC
T ss_pred             ccccccchhhHHHHHH---------HHHHHHHHHHHHHHHcCCCEEEEECCceEcC
Confidence            1000    00011111         133334455667788886 589888877665

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=90.39  E-value=0.63  Score=40.34  Aligned_cols=60  Identities=13%  Similarity=0.130  Sum_probs=38.6

Q ss_pred             CcEE-EEC-CcHHHHHHHHHHHHhCCC------cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeE
Q 015243           13 AKVL-MVG-AGGIGCELLKTLALSGFQ------DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSI   84 (410)
Q Consensus        13 ~~Vl-vvG-~GgiG~ev~knLa~~Gv~------~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i   84 (410)
                      ++|. |-| .+|||-++++.|+..|..      .+.+.|.                   ...+.+.+++.+++..  .++
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r-------------------~~~~l~~~~~~~~~~g--~~~   59 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSR-------------------TAADLEKISLECRAEG--ALT   59 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEES-------------------CHHHHHHHHHHHHTTT--CEE
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeC-------------------CHHHHHHHHHHHHhcC--CcE
Confidence            4655 446 679999999999999986      2444441                   2335556666666544  356


Q ss_pred             EEEccCCCC
Q 015243           85 TAHHANVKD   93 (410)
Q Consensus        85 ~~~~~~i~~   93 (410)
                      ..+..++++
T Consensus        60 ~~~~~Dvt~   68 (240)
T d2bd0a1          60 DTITADISD   68 (240)
T ss_dssp             EEEECCTTS
T ss_pred             EEEEecCCC
Confidence            666666643

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.38  E-value=0.34  Score=42.81  Aligned_cols=35  Identities=26%  Similarity=0.451  Sum_probs=29.8

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .|+++.++|.| .+|||-++++.|+..|.. +.+.|.
T Consensus        15 sL~gK~~lITGas~GIG~aia~~la~~Ga~-Vvi~~~   50 (272)
T d1g0oa_          15 SLEGKVALVTGAGRGIGREMAMELGRRGCK-VIVNYA   50 (272)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeC
Confidence            37888888888 789999999999999976 777763

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=90.33  E-value=0.43  Score=40.11  Aligned_cols=34  Identities=21%  Similarity=0.341  Sum_probs=28.0

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ++++++|+|+||.|-+++..+-..|...+.++|.
T Consensus         1 k~kkl~i~Gagg~~~~v~di~~~~~~~~~~f~dd   34 (193)
T d3bswa1           1 RTEKIYIYGASGHGLVCEDVAKNMGYKECIFLDD   34 (193)
T ss_dssp             CCSEEEEEC--CHHHHHHHHHHHHTCCEEEECCC
T ss_pred             CCCEEEEEcCCHhHHHHHHHHHhCCCcEEEEEcC
Confidence            4689999999999999999999999887777764

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=89.93  E-value=0.32  Score=42.43  Aligned_cols=34  Identities=29%  Similarity=0.439  Sum_probs=28.0

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      |+++.++|-| .+|||.++++.|+..|.. +.+.|.
T Consensus         2 l~gK~alITGas~GIG~a~a~~l~~~G~~-Vv~~~r   36 (243)
T d1q7ba_           2 FEGKIALVTGASRGIGRAIAETLAARGAK-VIGTAT   36 (243)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeC
Confidence            4677777777 779999999999999974 777774

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=89.88  E-value=1.2  Score=40.06  Aligned_cols=30  Identities=37%  Similarity=0.596  Sum_probs=26.0

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      +||||.| .|-||+.+++.|+..|. +++++|
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~-~V~~~d   31 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGH-DVIILD   31 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC-EEEEEE
Confidence            4799997 78899999999999995 588877

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=89.77  E-value=0.13  Score=42.22  Aligned_cols=98  Identities=15%  Similarity=0.269  Sum_probs=51.5

Q ss_pred             CCcEEEECCcHHHHHH-HHHHHHhCCCcEEEE-eCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           12 GAKVLMVGAGGIGCEL-LKTLALSGFQDIHII-DMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev-~knLa~~Gv~~i~li-D~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      +.||.|||+|++|.++ .+.|-.....++..+ |.+                .-|+  ..   ++.++.+  +.+  ...
T Consensus         4 kirvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~----------------~~~~--~~---~~a~~~~--i~~--~~~   58 (157)
T d1nvmb1           4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGID----------------AASD--GL---ARAQRMG--VTT--TYA   58 (157)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSC----------------TTCH--HH---HHHHHTT--CCE--ESS
T ss_pred             CcEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecc----------------hhcc--ch---hhhhhcC--Ccc--ccc
Confidence            4589999999999975 466544555555554 211                1111  11   1112222  111  111


Q ss_pred             CCCCCcchH-hhhccCcEEEEccCCh-HHHHHHHHHHHHCCCcEEEecc
Q 015243           90 NVKDPKFNV-EFFKQFNVVLNGLDNL-DARRHVNRLCLAADVPLVESGT  136 (410)
Q Consensus        90 ~i~~~~~~~-~~~~~~DvVi~a~Dn~-~~r~~i~~~c~~~~~p~i~~g~  136 (410)
                      .+.  .+.+ .-+.+.|+|+.|+.+. .......-...+.|+.+|+-..
T Consensus        59 ~~d--~l~~~~~~~~iDiVf~ATpag~h~~~~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          59 GVE--GLIKLPEFADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             HHH--HHHHSGGGGGEEEEEECSCHHHHHHHHHHHHHHCTTCEEEECST
T ss_pred             cee--eeeecccccccCEEEEcCCchhHHHhHHHHHHHHcCCEEEEccc
Confidence            110  0111 1246789999998753 2333333344678999998765

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=89.61  E-value=0.26  Score=43.13  Aligned_cols=107  Identities=21%  Similarity=0.285  Sum_probs=54.4

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        13 ~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      +||||.|+ |-+|+.+++.|...|  ++..+|...-       ++   ..|+-.  .+.+.+.++...|++=|+.  ...
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g--~~v~~~~~~~-------~~---~~Dl~~--~~~~~~~i~~~~~D~Vih~--Aa~   64 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVG--NLIALDVHSK-------EF---CGDFSN--PKGVAETVRKLRPDVIVNA--AAH   64 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTS--EEEEECTTCS-------SS---CCCTTC--HHHHHHHHHHHCCSEEEEC--CCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC--CEEEEECCCc-------cc---cCcCCC--HHHHHHHHHHcCCCEEEEe--ccc
Confidence            47999985 889999999998766  5555553321       11   123322  2334555666666543321  111


Q ss_pred             CCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCcc
Q 015243           92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFL  140 (410)
Q Consensus        92 ~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~  140 (410)
                      ...   .......+...  ..|......+.+.|...++.++..++.+.+
T Consensus        65 ~~~---~~~~~~~~~~~--~~n~~~~~~l~~~~~~~~~~~~~~ss~~~~  108 (298)
T d1n2sa_          65 TAV---DKAESEPELAQ--LLNATSVEAIAKAANETGAWVVHYSTDYVF  108 (298)
T ss_dssp             CCH---HHHTTCHHHHH--HHHTHHHHHHHHHHTTTTCEEEEEEEGGGS
T ss_pred             ccc---cccccCccccc--cccccccccchhhhhccccccccccccccc
Confidence            000   00000000000  012334456677788888888877655443

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=89.60  E-value=1.4  Score=35.40  Aligned_cols=39  Identities=15%  Similarity=0.124  Sum_probs=28.6

Q ss_pred             hHhhhccCcEEEEccCChHHHHHHHHHHHHCC-CcEEEec
Q 015243           97 NVEFFKQFNVVLNGLDNLDARRHVNRLCLAAD-VPLVESG  135 (410)
Q Consensus        97 ~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~-~p~i~~g  135 (410)
                      +.+.++++|+|+.|+.+..++.+..++..... .++||-+
T Consensus        58 ~~~~~~~~DvvF~alp~~~s~~~~~~l~~~g~~~~VIDlS   97 (147)
T d1mb4a1          58 DIESLKQLDAVITCQGGSYTEKVYPALRQAGWKGYWIDAA   97 (147)
T ss_dssp             CHHHHTTCSEEEECSCHHHHHHHHHHHHHTTCCSEEEESS
T ss_pred             chhhhccccEEEEecCchHHHHHhHHHHHcCCceEEEeCC
Confidence            34567999999999998888888766654432 4688754

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=89.60  E-value=0.34  Score=39.30  Aligned_cols=91  Identities=20%  Similarity=0.326  Sum_probs=54.8

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCC--CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           13 AKVLMVGA-GGIGCELLKTLALSGF--QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        13 ~~VlvvG~-GgiG~ev~knLa~~Gv--~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      -||.|||+ |-+|.|+++.|....+  .++..+.               +.+..|+.        +....+.....    
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~---------------s~~s~G~~--------~~~~~~~~~~~----   54 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLA---------------SARSAGKS--------LKFKDQDITIE----   54 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEE---------------CGGGTTCE--------EEETTEEEEEE----
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEec---------------cccccccc--------ccccCCccccc----
Confidence            37999996 8999999999998854  4455443               22233431        01111111111    


Q ss_pred             CCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecc
Q 015243           90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT  136 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~  136 (410)
                      ..     .+..+.+.|+++.++....+..+.. .....++.+||.+.
T Consensus        55 ~~-----~~~~~~~~d~~f~~~~~~~s~~~~~-~~~~~~~~VIDlSs   95 (154)
T d2gz1a1          55 ET-----TETAFEGVDIALFSAGSSTSAKYAP-YAVKAGVVVVDNTS   95 (154)
T ss_dssp             EC-----CTTTTTTCSEEEECSCHHHHHHHHH-HHHHTTCEEEECSS
T ss_pred             cc-----chhhhhhhhhhhhccCccchhhHHh-hhccccceehhcCh
Confidence            11     1233567899999988766665554 44567889998653

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.59  E-value=0.93  Score=40.58  Aligned_cols=31  Identities=29%  Similarity=0.359  Sum_probs=25.1

Q ss_pred             CcE-EEECCc-HHHHHHHHHHHHhCCCcEEEEeC
Q 015243           13 AKV-LMVGAG-GIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        13 ~~V-lvvG~G-giG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +|| ||.|+. =||+.+++.|...|.. ++.+|.
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~-V~~i~r   33 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYE-VHGIVR   33 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEEC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCE-EEEEEC
Confidence            578 788855 5999999999999974 777775

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.45  E-value=0.28  Score=43.12  Aligned_cols=62  Identities=19%  Similarity=0.223  Sum_probs=41.7

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      |..+.|+|.| .+|||.++++.|+..|.. +.+.+..                  ...+.+.+++.+++...  ++..+.
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~~-Vvi~~~~------------------~~~~~~~~~~~~~~~g~--~~~~~~   62 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGAS-VVVNYGS------------------SSKAAEEVVAELKKLGA--QGVAIQ   62 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESS------------------CHHHHHHHHHHHHHTTC--CEEEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEcCC------------------ChHHHHHHHHHHHHcCC--CceEec
Confidence            6678888887 778999999999999987 4454321                  12345566666666553  445555


Q ss_pred             cCCC
Q 015243           89 ANVK   92 (410)
Q Consensus        89 ~~i~   92 (410)
                      .+++
T Consensus        63 ~D~~   66 (259)
T d1ja9a_          63 ADIS   66 (259)
T ss_dssp             CCTT
T ss_pred             CCCC
Confidence            5554

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=89.40  E-value=0.97  Score=40.71  Aligned_cols=108  Identities=11%  Similarity=0.154  Sum_probs=62.7

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCC-cEEEEeCCccCcc-cCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQ-DIHIIDMDTIEVS-NLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~-~i~liD~D~Ve~s-NL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      .++|||.| .|=+|+.+++.|...|-. +++.+|.  .+.+ +..+                    +..+. .-+++.+.
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~--~~~~~~~~~--------------------~~~~~-~~~i~~~~   58 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDK--LTYAGNKAN--------------------LEAIL-GDRVELVV   58 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEEC--CCTTCCGGG--------------------TGGGC-SSSEEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeC--CCccccHHH--------------------HHHhh-cCCeEEEE
Confidence            57899998 788999999999999854 4555552  2111 1000                    01111 12455566


Q ss_pred             cCCCCCcchHhhhccCcEEEEccC-----------------ChHHHHHHHHHHHHCCCcEEEecccCccce
Q 015243           89 ANVKDPKFNVEFFKQFNVVLNGLD-----------------NLDARRHVNRLCLAADVPLVESGTTGFLGQ  142 (410)
Q Consensus        89 ~~i~~~~~~~~~~~~~DvVi~a~D-----------------n~~~r~~i~~~c~~~~~p~i~~g~~G~~G~  142 (410)
                      .++.+...-..++..+|.|+....                 |......+-+.|...++.++..++...+|.
T Consensus        59 ~Di~d~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~k~i~~ss~~vyg~  129 (346)
T d1oc2a_          59 GDIADAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGD  129 (346)
T ss_dssp             CCTTCHHHHHHHHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGGCC
T ss_pred             ccCCCHHHHHHHHhhhhhhhhhhhcccccchhhCcccceeeehHhHHhhhhhhccccccccccccceEecc
Confidence            666544444456677777766421                 111223334567778888887776665553

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=89.27  E-value=0.14  Score=46.59  Aligned_cols=33  Identities=21%  Similarity=0.313  Sum_probs=29.0

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCC-cEEEEeCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~-~i~liD~D   45 (410)
                      +||+|||+|..|..+|+.|.+.|.+ +++|++..
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~   38 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERR   38 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECC
Confidence            5899999999999999999998874 78888754

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.09  E-value=0.2  Score=40.74  Aligned_cols=31  Identities=16%  Similarity=0.378  Sum_probs=29.1

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEE
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHII   42 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~li   42 (410)
                      +.+|+|||.|-+|++.+..+.+.|..+++++
T Consensus        45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi   75 (153)
T d1gtea3          45 RGAVIVLGAGDTAFDCATSALRCGARRVFLV   75 (153)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCcceeEE
Confidence            5689999999999999999999999999986

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.09  E-value=0.17  Score=42.23  Aligned_cols=30  Identities=30%  Similarity=0.488  Sum_probs=27.1

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      -|+|||+|-.|...|..|++.|. +++|+|.
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~-~V~vlE~   36 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGK-KVLHIDK   36 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEcC
Confidence            48999999999999999999997 5888874

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=88.95  E-value=0.13  Score=43.38  Aligned_cols=35  Identities=31%  Similarity=0.436  Sum_probs=30.2

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      |.+++|.|+|+|.+|.++++.|...|+. +...|..
T Consensus        42 l~~~~vgiiG~G~IG~~va~~l~~fg~~-v~~~d~~   76 (188)
T d2naca1          42 LEAMHVGTVAAGRIGLAVLRRLAPFDVH-LHYTDRH   76 (188)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHGGGTCE-EEEECSS
T ss_pred             ccccceeeccccccchhhhhhhhccCce-EEEEeec
Confidence            6789999999999999999999988875 7777753

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=88.84  E-value=0.89  Score=36.57  Aligned_cols=81  Identities=15%  Similarity=0.041  Sum_probs=46.9

Q ss_pred             cEEEECC-cHHHHHHHHHHHHhCCC-cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCC-eEEEEccC
Q 015243           14 KVLMVGA-GGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM-SITAHHAN   90 (410)
Q Consensus        14 ~VlvvG~-GgiG~ev~knLa~~Gv~-~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v-~i~~~~~~   90 (410)
                      ||.|+|+ |.+|+.++-.|+..++- ...+++.+.           + ..+....|.+..+..+....... .-..... 
T Consensus         6 KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   72 (154)
T d1y7ta1           6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQL-----------L-EIPQAMKALEGVVMELEDCAFPLLAGLEATD-   72 (154)
T ss_dssp             EEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEE-----------E-CCGGGHHHHHHHHHHHHTTTCTTEEEEEEES-
T ss_pred             EEEEECCCCHHHHHHHHHHHhccccccccchhHhH-----------h-ccccchhhHcCchhhhhccccccccccccCC-
Confidence            8999997 99999999999988753 211111111           0 11233445665555555544322 1111111 


Q ss_pred             CCCCcchHhhhccCcEEEEccC
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                           ...+-+++.|+||.+..
T Consensus        73 -----~~~~~~~~advViitaG   89 (154)
T d1y7ta1          73 -----DPKVAFKDADYALLVGA   89 (154)
T ss_dssp             -----CHHHHTTTCSEEEECCC
T ss_pred             -----chhhhcccccEEEeecC
Confidence                 13456789999999764

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.79  E-value=0.58  Score=42.07  Aligned_cols=75  Identities=21%  Similarity=0.263  Sum_probs=50.6

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      +++++||-|||| .|. ++..+++.|..+++-+|..                    +.+..+++.+++.+-.-+|+....
T Consensus        34 ~~~~~VLDiGcG-~G~-lsl~aa~~Ga~~V~aid~s--------------------~~~~~a~~~~~~~~~~~~i~~~~~   91 (311)
T d2fyta1          34 FKDKVVLDVGCG-TGI-LSMFAAKAGAKKVLGVDQS--------------------EILYQAMDIIRLNKLEDTITLIKG   91 (311)
T ss_dssp             TTTCEEEEETCT-TSH-HHHHHHHTTCSEEEEEESS--------------------THHHHHHHHHHHTTCTTTEEEEES
T ss_pred             CCcCEEEEECCC-CCH-HHHHHHHcCCCEEEEEeCH--------------------HHHHHHHHHHHHhCCCccceEEEe
Confidence            467899999998 443 5667888999999998842                    123445555555555556777777


Q ss_pred             CCCCCcchHhhhccCcEEEE
Q 015243           90 NVKDPKFNVEFFKQFNVVLN  109 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~  109 (410)
                      ++.+....   ...+|+|++
T Consensus        92 ~~~~l~~~---~~~~D~Ivs  108 (311)
T d2fyta1          92 KIEEVHLP---VEKVDVIIS  108 (311)
T ss_dssp             CTTTSCCS---CSCEEEEEE
T ss_pred             eHHHhcCc---cccceEEEE
Confidence            76543221   358999997

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.65  E-value=0.65  Score=37.45  Aligned_cols=79  Identities=19%  Similarity=0.156  Sum_probs=44.9

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCC----CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhh-CCCCeEEE
Q 015243           13 AKVLMVGA-GGIGCELLKTLALSGF----QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKF-RPQMSITA   86 (410)
Q Consensus        13 ~~VlvvG~-GgiG~ev~knLa~~Gv----~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~-np~v~i~~   86 (410)
                      .||.|+|+ |.+|+.++-.|+..++    ..+.|++.|.               +-.+.|++.+.-.+... .+......
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~---------------~~~~~~~~~l~~~~~~~~~~~~~~~~   68 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDI---------------TPMMGVLDGVLMELQDCALPLLKDVI   68 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECC---------------GGGHHHHHHHHHHHHHTCCTTEEEEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecC---------------ccchhhhhhhhhhhcccccccccccc
Confidence            48999996 9999999999987665    2344443222               11233444444444332 23222111


Q ss_pred             EccCCCCCcchHhhhccCcEEEEccC
Q 015243           87 HHANVKDPKFNVEFFKQFNVVLNGLD  112 (410)
Q Consensus        87 ~~~~i~~~~~~~~~~~~~DvVi~a~D  112 (410)
                      ...      ...+-+++.|+||.+..
T Consensus        69 ~~~------~~~~~~~~~dvVVitag   88 (154)
T d5mdha1          69 ATD------KEEIAFKDLDVAILVGS   88 (154)
T ss_dssp             EES------CHHHHTTTCSEEEECCS
T ss_pred             cCc------ccccccCCceEEEEecc
Confidence            111      13356789999998754

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=88.60  E-value=0.26  Score=40.42  Aligned_cols=34  Identities=29%  Similarity=0.488  Sum_probs=30.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +.+|+|+|+|++|.-.+..+...|..++.++|.+
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~   66 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVK   66 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCcccccccch
Confidence            5789999999999999999999999999998844

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=88.56  E-value=1.3  Score=36.53  Aligned_cols=78  Identities=15%  Similarity=0.121  Sum_probs=46.1

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCC-C-----cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC-CCCeE
Q 015243           13 AKVLMVGA-GGIGCELLKTLALSGF-Q-----DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR-PQMSI   84 (410)
Q Consensus        13 ~~VlvvG~-GgiG~ev~knLa~~Gv-~-----~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~n-p~v~i   84 (410)
                      .||.|+|+ |.+|..++..|+..++ |     .++|+|-+                 -.+.+++..+-.+...- |...-
T Consensus        25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~-----------------~~~~~l~g~~mdl~d~a~~~~~~   87 (175)
T d7mdha1          25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSE-----------------RSFQALEGVAMELEDSLYPLLRE   87 (175)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCG-----------------GGHHHHHHHHHHHHTTTCTTEEE
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCc-----------------cccchhcchhhhhcccccccccC
Confidence            37999996 9999999999997665 2     34444311                 12234455554454433 22222


Q ss_pred             EEEccCCCCCcchHhhhccCcEEEEccCC
Q 015243           85 TAHHANVKDPKFNVEFFKQFNVVLNGLDN  113 (410)
Q Consensus        85 ~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn  113 (410)
                      .....+      ..+-+++.|+||.+...
T Consensus        88 ~~~~~~------~~~~~~~aDvVvi~ag~  110 (175)
T d7mdha1          88 VSIGID------PYEVFEDVDWALLIGAK  110 (175)
T ss_dssp             EEEESC------HHHHTTTCSEEEECCCC
T ss_pred             cccccc------chhhccCCceEEEeecc
Confidence            221111      34567999999997643

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=88.56  E-value=0.18  Score=43.45  Aligned_cols=110  Identities=16%  Similarity=0.240  Sum_probs=65.9

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCC--cEEEEeCCccCcccCc--cccCCCCC---CCC-chHHHHHHHHHHhhCCCC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMDTIEVSNLN--RQFLFRQS---HVG-QSKAKVARDAVLKFRPQM   82 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~--~i~liD~D~Ve~sNL~--Rq~lf~~~---diG-~~Ka~~a~~~l~~~np~v   82 (410)
                      .+.||.|||+||-||.++..|.+.|+.  ++..+|.|.-..+...  .-.+.+..   ..| ....+..++...+--   
T Consensus        14 ~~~ki~ViGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~g~Gag~~p~~g~~aa~e~~---   90 (209)
T d2vapa1          14 TKAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRTKADKKILIGKKLTRGLGAGGNPKIGEEAAKESA---   90 (209)
T ss_dssp             TCCCEEEEEEHHHHHHHHHHHHHHTCTTEEEEEEESBHHHHHTSCCSEEEECCTTTTTTBCCTTCHHHHHHHHHHTH---
T ss_pred             cCCcEEEEEeCChHHHHHHHHHHcCCCceEEEEEeCCHHHHhcCCcchhcccccccccccccccchHHHHHHHHHHH---
Confidence            568999999999999999999999986  4567788876666542  11122211   111 112233333322211   


Q ss_pred             eEEEEccCCCCCcchHhhhccCcEEEEcc--CC---hHHHHHHHHHHHHCCCcEEEec
Q 015243           83 SITAHHANVKDPKFNVEFFKQFNVVLNGL--DN---LDARRHVNRLCLAADVPLVESG  135 (410)
Q Consensus        83 ~i~~~~~~i~~~~~~~~~~~~~DvVi~a~--Dn---~~~r~~i~~~c~~~~~p~i~~g  135 (410)
                                  ..-.+.++++|+|+.+.  .-   --+-..+.++|++.+++.+...
T Consensus        91 ------------~~I~~~l~~~d~vfi~AGlGGGTGsgaapvia~~ake~g~lvv~iv  136 (209)
T d2vapa1          91 ------------EEIKAAIQDSDMVFITCGLGGGTGTGSAPVVAEISKKIGALTVAVV  136 (209)
T ss_dssp             ------------HHHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ------------HHHHHhccCCCEEEEEEeCCCCccccHHHHHHHHHHHcCCcEEEEE
Confidence                        00123466788776642  21   2345668889999888776543

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.50  E-value=0.2  Score=43.74  Aligned_cols=33  Identities=27%  Similarity=0.550  Sum_probs=29.1

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +..||+|||+|--|-..|..|++.|. +++|+..
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~-~V~VlEa   36 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEA   36 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeC
Confidence            46789999999999999999999998 5888763

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=88.48  E-value=0.22  Score=41.86  Aligned_cols=36  Identities=25%  Similarity=0.409  Sum_probs=30.6

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .|.+++|.|+|+|.+|.++++.|...|+. +...|..
T Consensus        41 ~l~~~~vgiiG~G~IG~~va~~l~~fg~~-v~~~d~~   76 (188)
T d1sc6a1          41 EARGKKLGIIGYGHIGTQLGILAESLGMY-VYFYDIE   76 (188)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             cccceEEEEeecccchhhhhhhcccccce-Eeecccc
Confidence            37889999999999999999998888766 7777754

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=88.27  E-value=0.17  Score=45.91  Aligned_cols=40  Identities=18%  Similarity=0.395  Sum_probs=34.2

Q ss_pred             HHHhCCcEEEECCcHHHHHHHHHHHHh----------CCCcEEEEeCCcc
Q 015243            8 EAIKGAKVLMVGAGGIGCELLKTLALS----------GFQDIHIIDMDTI   47 (410)
Q Consensus         8 ~~L~~~~VlvvG~GgiG~ev~knLa~~----------Gv~~i~liD~D~V   47 (410)
                      ++|.+.||++.|+|+-|+-+++.|+..          |.++|.++|.+-+
T Consensus        21 k~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGl   70 (298)
T d1gq2a1          21 NRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGL   70 (298)
T ss_dssp             SCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEE
T ss_pred             CCHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCc
Confidence            368899999999999999999999865          4569999997654

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=88.23  E-value=0.22  Score=41.98  Aligned_cols=33  Identities=18%  Similarity=0.382  Sum_probs=28.8

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCcc
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTI   47 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~V   47 (410)
                      -|+|||+|..|.+.+..+++.|. +++|+|.+.+
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~-kV~iiE~~~~   36 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQ-KCALIEAKEL   36 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTC-CEEEEESSCT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-EEEEEeccCc
Confidence            48999999999999999999997 5999886543

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=88.21  E-value=0.18  Score=42.76  Aligned_cols=35  Identities=23%  Similarity=0.286  Sum_probs=29.5

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      .|++++|.|||+|.||.++++.+...|+. +...|.
T Consensus        44 ~l~g~tvgIiG~G~IG~~va~~l~~fg~~-v~~~d~   78 (191)
T d1gdha1          44 KLDNKTLGIYGFGSIGQALAKRAQGFDMD-IDYFDT   78 (191)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECS
T ss_pred             eecccceEEeecccchHHHHHHHHhhccc-cccccc
Confidence            46689999999999999999999888876 556663

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.20  E-value=0.097  Score=43.24  Aligned_cols=32  Identities=28%  Similarity=0.452  Sum_probs=25.6

Q ss_pred             hCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEE
Q 015243           11 KGAKVLMVGA-GGIGCELLKTLALSGFQDIHII   42 (410)
Q Consensus        11 ~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~li   42 (410)
                      .+.+|+|.|+ |++|...+.....+|...+.++
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~   60 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTA   60 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEEeccccccccccccccccCccccccc
Confidence            3567999996 9999999999989998644443

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=88.20  E-value=0.2  Score=43.87  Aligned_cols=31  Identities=32%  Similarity=0.456  Sum_probs=28.0

Q ss_pred             EEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           15 VLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        15 VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      |+|||+|-.|+.+|..|++.|. +++|+|...
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~-~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGV-KTLLVDAFD   36 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            8999999999999999999997 599998643

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.08  E-value=0.94  Score=41.00  Aligned_cols=76  Identities=25%  Similarity=0.297  Sum_probs=53.9

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA   89 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~   89 (410)
                      +++++||-||||. | .++..+++.|..+++.+|..                    +.++.+++..++.+-.-+++....
T Consensus        37 ~~~~~VLDlGcGt-G-~ls~~aa~~Ga~~V~avd~s--------------------~~~~~a~~~~~~~~~~~~i~~i~~   94 (328)
T d1g6q1_          37 FKDKIVLDVGCGT-G-ILSMFAAKHGAKHVIGVDMS--------------------SIIEMAKELVELNGFSDKITLLRG   94 (328)
T ss_dssp             HTTCEEEEETCTT-S-HHHHHHHHTCCSEEEEEESS--------------------THHHHHHHHHHHTTCTTTEEEEES
T ss_pred             CCcCEEEEeCCCC-C-HHHHHHHHhCCCEEEEEeCC--------------------HHHHHHHHHHHHhCccccceEEEe
Confidence            5789999999984 3 34567788999999998841                    235567777777776667888877


Q ss_pred             CCCCCcchHhhhccCcEEEEc
Q 015243           90 NVKDPKFNVEFFKQFNVVLNG  110 (410)
Q Consensus        90 ~i~~~~~~~~~~~~~DvVi~a  110 (410)
                      ++.+..+.   -..+|+|++.
T Consensus        95 ~~~~l~~~---~~~~D~i~se  112 (328)
T d1g6q1_          95 KLEDVHLP---FPKVDIIISE  112 (328)
T ss_dssp             CTTTSCCS---SSCEEEEEEC
T ss_pred             ehhhccCc---ccceeEEEEE
Confidence            77543221   2578999874

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=88.00  E-value=0.25  Score=41.79  Aligned_cols=36  Identities=14%  Similarity=0.237  Sum_probs=30.9

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCcc
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTI   47 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~V   47 (410)
                      .+..++|||+|..|.+.|..+++.|. +++|+|.+.+
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G~-~V~liE~~~~   39 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQAL   39 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTC-CEEEECSSCT
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence            35679999999999999999999997 5899887643

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=87.94  E-value=0.35  Score=40.02  Aligned_cols=34  Identities=32%  Similarity=0.556  Sum_probs=30.2

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +-++|+|+|+|-.|-..+....++| .+++++|-+
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lG-A~V~~~D~~   64 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLG-AQVQIFDIN   64 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCC-CEEEEEeCc
Confidence            5689999999999999999999999 559999843

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=87.82  E-value=0.12  Score=47.08  Aligned_cols=40  Identities=20%  Similarity=0.358  Sum_probs=33.8

Q ss_pred             HHHhCCcEEEECCcHHHHHHHHHHHHhCC----------CcEEEEeCCcc
Q 015243            8 EAIKGAKVLMVGAGGIGCELLKTLALSGF----------QDIHIIDMDTI   47 (410)
Q Consensus         8 ~~L~~~~VlvvG~GgiG~ev~knLa~~Gv----------~~i~liD~D~V   47 (410)
                      ++|.+.||+++|+|+-|+.+++.|+.+++          ++|.++|.+-+
T Consensus        21 k~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Gl   70 (308)
T d1o0sa1          21 KLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGL   70 (308)
T ss_dssp             CCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEE
T ss_pred             CCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCC
Confidence            46889999999999999999999987633          37999997765

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=87.75  E-value=0.96  Score=39.19  Aligned_cols=59  Identities=17%  Similarity=0.274  Sum_probs=39.0

Q ss_pred             cEEEE-C-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           14 KVLMV-G-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        14 ~Vlvv-G-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      .|.|| | .+|||.++++.|+..|.. +.+.|...                  ..+.+.+++.+++..  .++..+..++
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga~-V~i~~~~~------------------~~~~~~~~~~~~~~g--~~~~~~~~Dv   60 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGCK-VLVNYARS------------------AKAAEEVSKQIEAYG--GQAITFGGDV   60 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSC------------------HHHHHHHHHHHHHHT--CEEEEEECCT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCC------------------HHHHHHHHHHHHHcC--CcEEEEeCCC
Confidence            45555 4 789999999999999975 66655221                  124566667766654  3555666666


Q ss_pred             CC
Q 015243           92 KD   93 (410)
Q Consensus        92 ~~   93 (410)
                      ++
T Consensus        61 ~~   62 (244)
T d1edoa_          61 SK   62 (244)
T ss_dssp             TS
T ss_pred             CC
Confidence            43

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=87.57  E-value=0.24  Score=44.11  Aligned_cols=36  Identities=31%  Similarity=0.638  Sum_probs=31.0

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      +|+++.++|-| .+|||.++++.|+..|. ++.++|.+
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~   38 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKS   38 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            47889999998 68999999999999997 58888743

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.55  E-value=0.46  Score=41.52  Aligned_cols=62  Identities=16%  Similarity=0.208  Sum_probs=46.0

Q ss_pred             CcEEEE-C-CcHHHHHHHHHHHHhCC--CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243           13 AKVLMV-G-AGGIGCELLKTLALSGF--QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH   88 (410)
Q Consensus        13 ~~Vlvv-G-~GgiG~ev~knLa~~Gv--~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~   88 (410)
                      .||+|| | .+|||-++++.|++.+-  -++.++|.                   ...+.+.+++.+...+|+.++..+.
T Consensus         6 gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r-------------------~~~~l~~~~~~l~~~~~~~~~~~~~   66 (259)
T d1oaaa_           6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSAR-------------------SESMLRQLKEELGAQQPDLKVVLAA   66 (259)
T ss_dssp             SEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEES-------------------CHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEEC-------------------CHHHHHHHHHHHHhhcCCceEEEEE
Confidence            345555 6 56999999999998532  25777762                   2457788888898889999998888


Q ss_pred             cCCCC
Q 015243           89 ANVKD   93 (410)
Q Consensus        89 ~~i~~   93 (410)
                      .++++
T Consensus        67 ~Dvs~   71 (259)
T d1oaaa_          67 ADLGT   71 (259)
T ss_dssp             CCTTS
T ss_pred             ccCCC
Confidence            77754

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=87.45  E-value=0.45  Score=36.92  Aligned_cols=85  Identities=16%  Similarity=0.133  Sum_probs=53.6

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~   92 (410)
                      ++|+|+|.|.+|.++++.|...   ++.++|.|.-                   +.+    .++.  .++  ..+.++.+
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~---~i~vi~~d~~-------------------~~~----~~~~--~~~--~~i~Gd~~   50 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGS---EVFVLAEDEN-------------------VRK----KVLR--SGA--NFVHGDPT   50 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGG---GEEEEESCTT-------------------HHH----HHHH--TTC--EEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHcCC---CCEEEEcchH-------------------HHH----HHHh--cCc--cccccccC
Confidence            5799999999999999998543   3677775431                   222    1222  123  34445554


Q ss_pred             CCc-chHhhhccCcEEEEccCChHHHHHHHHHHHHC
Q 015243           93 DPK-FNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA  127 (410)
Q Consensus        93 ~~~-~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~  127 (410)
                      +.. +...-+++++.++.++++......+-..+++.
T Consensus        51 ~~~~L~~a~i~~A~~vi~~~~~d~~n~~~~~~~r~~   86 (129)
T d2fy8a1          51 RVSDLEKANVRGARAVIVNLESDSETIHCILGIRKI   86 (129)
T ss_dssp             SHHHHHHTTCTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred             CHHHHHHhhhhcCcEEEEeccchhhhHHHHHHHHHH
Confidence            321 22223678899999998877766666666654

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=87.41  E-value=0.26  Score=43.01  Aligned_cols=35  Identities=31%  Similarity=0.544  Sum_probs=29.8

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ||.++.++|.| .+|||.++++.|+..|. ++.+.|.
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r   37 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDR   37 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            57889999997 56899999999999997 4778763

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.87  E-value=0.29  Score=42.71  Aligned_cols=35  Identities=34%  Similarity=0.517  Sum_probs=30.2

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +|+++.++|-| .+|||.++++.|+..|.. +.++|.
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~-V~~~~r   37 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGAR-LVACDI   37 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            47888899998 579999999999999975 888874

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.86  E-value=0.23  Score=44.60  Aligned_cols=29  Identities=21%  Similarity=0.348  Sum_probs=26.4

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      .|+|||+|-.|+.+|..|+..|. +++|+|
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~-~V~iiE   31 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNK-KVLVIE   31 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTC-CEEEEC
T ss_pred             cEEEECCcHHHHHHHHHHHhCCC-cEEEEE
Confidence            58999999999999999999995 588887

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.80  E-value=0.31  Score=42.56  Aligned_cols=35  Identities=26%  Similarity=0.502  Sum_probs=30.2

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      |.+++++|.| .+|||.++++.|+..|. ++.++|.+
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~   40 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRT   40 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECC
Confidence            6788999997 77999999999999997 58888743

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.76  E-value=0.31  Score=42.29  Aligned_cols=34  Identities=26%  Similarity=0.509  Sum_probs=29.5

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      |+++.++|.| .+|||.++++.|+..|. ++.++|.
T Consensus         3 lkGKvalITGas~GIG~aia~~la~~G~-~V~~~~r   37 (248)
T d2o23a1           3 VKGLVAVITGGASGLGLATAERLVGQGA-SAVLLDL   37 (248)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            6778888887 67999999999999998 5888884

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=86.73  E-value=0.29  Score=41.99  Aligned_cols=32  Identities=22%  Similarity=0.338  Sum_probs=28.5

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      --|+|||+|..|+..|..|++.|. +++|+|..
T Consensus         3 yDViIIGaG~aGl~aA~~la~~G~-~V~liEk~   34 (251)
T d2i0za1           3 YDVIVIGGGPSGLMAAIGAAEEGA-NVLLLDKG   34 (251)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            469999999999999999999998 58898854

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.70  E-value=0.38  Score=39.18  Aligned_cols=31  Identities=35%  Similarity=0.419  Sum_probs=26.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      +.+|+|+|+|++|...+..+-..|.. +..+|
T Consensus        28 g~~vlI~GaG~vG~~a~q~ak~~G~~-vi~~~   58 (168)
T d1piwa2          28 GKKVGIVGLGGIGSMGTLISKAMGAE-TYVIS   58 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCE-EEEEE
T ss_pred             CCEEEEECCCCcchhHHHHhhhcccc-ccccc
Confidence            57899999999999999888889984 66777

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=86.55  E-value=0.24  Score=43.40  Aligned_cols=37  Identities=16%  Similarity=0.385  Sum_probs=31.0

Q ss_pred             HHhCCcEEEECC-c--HHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243            9 AIKGAKVLMVGA-G--GIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus         9 ~L~~~~VlvvG~-G--giG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      +|++++++|.|+ |  |||-++++.|+..|. ++.+.+.|.
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga-~Vil~~~~~   42 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDR   42 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTC-EEEEEECSC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCC-EEEEEeCCh
Confidence            478999999996 4  599999999999996 488887554

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=86.54  E-value=0.31  Score=42.50  Aligned_cols=34  Identities=26%  Similarity=0.466  Sum_probs=29.9

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      |.+++|+|-|.|.+|..+++.|...|.. ++.+|.
T Consensus        37 l~g~~v~IqG~GnVG~~~a~~L~~~Gak-vv~~d~   70 (230)
T d1leha1          37 LEGLAVSVQGLGNVAKALCKKLNTEGAK-LVVTDV   70 (230)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCE-EEeecc
Confidence            7788999999999999999999999955 666664

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=86.48  E-value=0.21  Score=44.01  Aligned_cols=35  Identities=23%  Similarity=0.336  Sum_probs=30.3

Q ss_pred             HHhCCcEEEECC-c--HHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVGA-G--GIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG~-G--giG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +|++++++|.|+ |  |||-++++.|+..|.. +.++|.
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~-V~i~~r   39 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGAT-LAFTYL   39 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCE-EEEEES
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            478999999996 4  7999999999999977 778873

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.47  E-value=0.36  Score=40.44  Aligned_cols=34  Identities=26%  Similarity=0.358  Sum_probs=29.6

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCcc
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTI   47 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~V   47 (410)
                      .-|+|||+|+.|.+.+..+++.|. +++|++.+.+
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G~-kV~vIEk~~~   37 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKGNL   37 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-EEEEEecCCC
Confidence            468999999999999999999997 5889887654

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=86.47  E-value=0.45  Score=39.27  Aligned_cols=89  Identities=16%  Similarity=0.128  Sum_probs=52.0

Q ss_pred             hCCcEEEECCcHHHHH-HHHHHHHhCC-CcEE-EEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243           11 KGAKVLMVGAGGIGCE-LLKTLALSGF-QDIH-IIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH   87 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~e-v~knLa~~Gv-~~i~-liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~   87 (410)
                      ++.||.|||+|.+|.. .+..+...+- -+|+ +.|.+                   ..|++.+++.   .+ ...+  +
T Consensus         2 kkirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~-------------------~~~~~~~~~~---~~-~~~~--~   56 (181)
T d1zh8a1           2 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRT-------------------RSHAEEFAKM---VG-NPAV--F   56 (181)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSS-------------------HHHHHHHHHH---HS-SCEE--E
T ss_pred             CCcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEecc-------------------Hhhhhhhhcc---cc-ccce--e
Confidence            4568999999999987 4777765432 2333 44432                   2334333332   22 2222  1


Q ss_pred             ccCCCCCcchHhhh--ccCcEEEEccCChHHHHHHHHHHHHCCCcEE
Q 015243           88 HANVKDPKFNVEFF--KQFNVVLNGLDNLDARRHVNRLCLAADVPLV  132 (410)
Q Consensus        88 ~~~i~~~~~~~~~~--~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i  132 (410)
                       .++      ++++  .+.|+|+.|+.+ .....+...+.+++++++
T Consensus        57 -~~~------~ell~~~~id~v~I~tp~-~~h~~~~~~al~~gk~V~   95 (181)
T d1zh8a1          57 -DSY------EELLESGLVDAVDLTLPV-ELNLPFIEKALRKGVHVI   95 (181)
T ss_dssp             -SCH------HHHHHSSCCSEEEECCCG-GGHHHHHHHHHHTTCEEE
T ss_pred             -eee------eccccccccceeeccccc-cccccccccccccchhhh
Confidence             111      2333  358999999864 556667777888888754

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.45  E-value=0.15  Score=41.19  Aligned_cols=27  Identities=37%  Similarity=0.631  Sum_probs=24.5

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCc
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQD   38 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~   38 (410)
                      .+||+|||.|.+|++++..+++.|...
T Consensus        29 gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          29 GNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             CCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            468999999999999999999999753

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=86.43  E-value=0.67  Score=38.50  Aligned_cols=82  Identities=17%  Similarity=0.224  Sum_probs=50.0

Q ss_pred             CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      .||.|+| .|-+|.|+++.|...-  ++.|.             +++..+..|+.=.+        ..|+.. .  ...+
T Consensus         2 ikVaIvGATGyvG~eLirlL~~HP--~~ei~-------------~l~s~~~aG~~i~~--------~~p~~~-~--~~~~   55 (176)
T d1vkna1           2 IRAGIIGATGYTGLELVRLLKNHP--EAKIT-------------YLSSRTYAGKKLEE--------IFPSTL-E--NSIL   55 (176)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCT--TEEEE-------------EEECSTTTTSBHHH--------HCGGGC-C--CCBC
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCC--CceEE-------------EeeccccCCCcccc--------cCchhh-c--cccc
Confidence            3799999 5788999999997532  34443             24556667775433        333321 0  0111


Q ss_pred             CCCcchHhhhccCcEEEEccCChHHHHHHH
Q 015243           92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVN  121 (410)
Q Consensus        92 ~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~  121 (410)
                      .+ ...+++.++.|+|+.|+.+-.++..+.
T Consensus        56 ~~-~~~~~~~~~~dvvf~a~p~~~s~~~~~   84 (176)
T d1vkna1          56 SE-FDPEKVSKNCDVLFTALPAGASYDLVR   84 (176)
T ss_dssp             BC-CCHHHHHHHCSEEEECCSTTHHHHHHT
T ss_pred             cc-cCHhHhccccceEEEccccHHHHHHHH
Confidence            11 122355678999999999877765543

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=86.31  E-value=0.38  Score=40.37  Aligned_cols=30  Identities=27%  Similarity=0.386  Sum_probs=27.0

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      -|+|||+|..|.+.|..+++.|.+ ++|+|.
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G~k-V~vie~   34 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLGFK-TTCIEK   34 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCC-EEEEEC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCc-EEEEEe
Confidence            589999999999999999999975 888874

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=86.30  E-value=0.2  Score=41.52  Aligned_cols=34  Identities=26%  Similarity=0.286  Sum_probs=29.3

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ++.+|+|||.|..|.+.|..+++.|.. .+|+|..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~-v~iie~~   37 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQ-PVLITGM   37 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCC-CEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCc-eEEEEee
Confidence            356899999999999999999999985 7777743

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.25  E-value=0.43  Score=38.60  Aligned_cols=31  Identities=29%  Similarity=0.466  Sum_probs=27.0

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      ..+|+|+|+|++|.-.+..+-..| .++..+|
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~G-~~Vi~~~   58 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAMG-LHVAAID   58 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CCEEEEeeccccHHHHHHHHHHcC-Cccceec
Confidence            567999999999999999888899 4788877

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=86.13  E-value=0.93  Score=37.38  Aligned_cols=37  Identities=8%  Similarity=0.149  Sum_probs=26.4

Q ss_pred             HhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEec
Q 015243           98 VEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG  135 (410)
Q Consensus        98 ~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g  135 (410)
                      .+++++.|+|++|+..+..+...... .+.++..+-.+
T Consensus        74 ~~~~~~vDvViEcTG~f~~~~~~~~h-l~~G~k~Vi~s  110 (172)
T d2czca2          74 NDLLEKVDIIVDATPGGIGAKNKPLY-EKAGVKAIFQG  110 (172)
T ss_dssp             HHHHTTCSEEEECCSTTHHHHHHHHH-HHHTCEEEECT
T ss_pred             hhhhccCCEEEECCCCCCCHHHHHHH-HHcCCCEEEEC
Confidence            45578999999999988877766543 35566666544

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.05  E-value=0.37  Score=40.96  Aligned_cols=106  Identities=17%  Similarity=0.255  Sum_probs=63.2

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCC--cEEEEeCCccCcccCcccc--CCCCC-----CCCchHHHHHHHHHHhhCCCCe
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMDTIEVSNLNRQF--LFRQS-----HVGQSKAKVARDAVLKFRPQMS   83 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~--~i~liD~D~Ve~sNL~Rq~--lf~~~-----diG~~Ka~~a~~~l~~~np~v~   83 (410)
                      +.|.|||.||-||.++..|.+.|+.  ++..+|.|.-..++..-+-  +..++     ..| ...+..++...+--    
T Consensus         2 a~IkViGvGGaG~n~v~~~~~~~~~~v~~iainTD~~~L~~~~~~~ki~iG~~~~~g~G~g-g~p~~g~~aa~e~~----   76 (198)
T d1ofua1           2 AVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALKNIAARTVLQLGPGVTKGLGAG-ANPEVGRQAALEDR----   76 (198)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESBTGGGSSCSCSEEEECCHHHHTTBCCC-SCHHHHHHHHHHTH----
T ss_pred             ceEEEEEECchHHHHHHHHHHcCCCCeEEEEEeCcHHHHhcCCccceeccccccccCCCCC-CChHHHHHHHHHHH----
Confidence            5789999999999999999999986  5777788876666533111  11110     011 11122222221110    


Q ss_pred             EEEEccCCCCCcchHhhhccCcEEEEc--cCC---hHHHHHHHHHHHHCCCcEEEe
Q 015243           84 ITAHHANVKDPKFNVEFFKQFNVVLNG--LDN---LDARRHVNRLCLAADVPLVES  134 (410)
Q Consensus        84 i~~~~~~i~~~~~~~~~~~~~DvVi~a--~Dn---~~~r~~i~~~c~~~~~p~i~~  134 (410)
                                 ..-.+.++++|+||.+  +.-   --+--.+.++|++.+++.+..
T Consensus        77 -----------~~I~~~l~~~d~vfi~AGlGGGTGtgaapviA~~ake~g~lvvai  121 (198)
T d1ofua1          77 -----------ERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEMGILTVAV  121 (198)
T ss_dssp             -----------HHHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             -----------HHHHHHhCCCCeEEEEecCCCCccccHHHHHHHHHHHcCCCEEEE
Confidence                       0113456788888764  222   234566899999998877654

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.05  E-value=0.36  Score=41.72  Aligned_cols=36  Identities=25%  Similarity=0.458  Sum_probs=31.1

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      |++++++|.| .+|||.++++.|+..|. ++.++|.+.
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~~   38 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNE   38 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            6788999998 58999999999999997 488888653

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.58  E-value=0.29  Score=40.69  Aligned_cols=34  Identities=12%  Similarity=0.100  Sum_probs=29.2

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      +.+|+|||.|..|.+.|..|++.|.. ..++|...
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~-v~vie~~~   38 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELK-PLLFEGWM   38 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC-CEEECCSS
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCc-EEEEEeec
Confidence            57899999999999999999999986 66777443

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=85.56  E-value=0.39  Score=43.37  Aligned_cols=36  Identities=22%  Similarity=0.247  Sum_probs=30.3

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      .+++||||.| .|-||+++++.|...|.. +..+|...
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~-V~~~~r~~   42 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGAT-VKGYSLTA   42 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSC
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCC
Confidence            6799999998 566999999999999974 77777543

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.49  E-value=0.36  Score=39.65  Aligned_cols=31  Identities=23%  Similarity=0.424  Sum_probs=25.2

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEE
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHII   42 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~li   42 (410)
                      +.+|+|.| +|++|..++..+-..|...|.++
T Consensus        26 g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~   57 (183)
T d1pqwa_          26 GERVLIHSATGGVGMAAVSIAKMIGARIYTTA   57 (183)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCEEEEECCCCCcccccchhhccccccceeee
Confidence            46788877 59999999999989998766554

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.37  E-value=0.46  Score=39.86  Aligned_cols=36  Identities=17%  Similarity=0.269  Sum_probs=30.7

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcc
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVS   50 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~s   50 (410)
                      -|+|||+|..|.+.+..+++.|. ++.|+|.+.+--.
T Consensus         5 DviIIG~GpaG~~aA~~aar~G~-kV~vIEk~~~GG~   40 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELGA-RAAVVESHKLGGT   40 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCTTHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-EEEEEeccCCCCc
Confidence            48999999999999999999996 5999997765433

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.35  E-value=0.96  Score=38.81  Aligned_cols=37  Identities=22%  Similarity=0.425  Sum_probs=30.0

Q ss_pred             hCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccC
Q 015243           11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIE   48 (410)
Q Consensus        11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve   48 (410)
                      +.++|+|.| .||||.++++.|+..|.. +.++|...-+
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~-V~~~~~~~~~   38 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWW-VASIDVVENE   38 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCE-EEEEESSCCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCccc
Confidence            367899998 589999999999999984 7788865433

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=85.05  E-value=0.45  Score=38.10  Aligned_cols=34  Identities=21%  Similarity=0.327  Sum_probs=28.3

Q ss_pred             CCcEEEE--CCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           12 GAKVLMV--GAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        12 ~~~Vlvv--G~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      .++|+|+  |.|-+|+|+|..|+..|. ++||+.++.
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~G~-~Vtlv~~~~   74 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATAGH-EVTIVSGVH   74 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             CCceEEEecCCChHHHHHHHHHHHcCC-eEEEEecCC
Confidence            4556666  899999999999999995 699998654

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.77  E-value=0.38  Score=40.25  Aligned_cols=33  Identities=33%  Similarity=0.368  Sum_probs=28.0

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      +.++++.|+|.|.+|.++++.+...|. ++...|
T Consensus        42 l~~k~vgiiG~G~IG~~va~~~~~fg~-~v~~~d   74 (184)
T d1ygya1          42 IFGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYD   74 (184)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEC
T ss_pred             ccceeeeeccccchhHHHHHHhhhccc-eEEeec
Confidence            678899999999999999999987775 466655

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=84.58  E-value=0.56  Score=38.00  Aligned_cols=30  Identities=27%  Similarity=0.391  Sum_probs=26.9

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      -|+|||.|..|.+.+-.+++.|.+ ++|+|.
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~-v~iie~   32 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIR-TGLMGE   32 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCC-EEEECS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCe-EEEEEE
Confidence            489999999999999999999986 777774

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.58  E-value=0.42  Score=40.60  Aligned_cols=36  Identities=14%  Similarity=0.251  Sum_probs=30.7

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCC-CcEEEEeCCcc
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTI   47 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~D~V   47 (410)
                      ..+++|||.|..|.+++..|...|. ++|++++.+..
T Consensus         4 ~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~   40 (213)
T d1m6ia1           4 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPE   40 (213)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSS
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence            3568999999999999999999887 48999986543

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=84.40  E-value=0.31  Score=35.04  Aligned_cols=34  Identities=21%  Similarity=0.338  Sum_probs=29.4

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCcc
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTI   47 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~V   47 (410)
                      ++|.|+|.|-+|.-++..-.++|+. +.++|+|.=
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~-v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIA-VWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEE-EEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCE-EEEEcCCCC
Confidence            5799999999999999999999988 778887643

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=84.37  E-value=0.42  Score=41.37  Aligned_cols=33  Identities=24%  Similarity=0.339  Sum_probs=28.8

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ...|+|||+|+.|...|..|++.|. +++|+|..
T Consensus         4 ~~DViIIGaG~aGl~aA~~la~~G~-~V~vlEk~   36 (253)
T d2gqfa1           4 YSENIIIGAGAAGLFCAAQLAKLGK-SVTVFDNG   36 (253)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            3569999999999999999999996 48888854

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=84.34  E-value=0.44  Score=41.66  Aligned_cols=35  Identities=31%  Similarity=0.519  Sum_probs=30.4

Q ss_pred             HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +|+++.++|-| .+|||.++++.|+..|. ++.+.|.
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~   37 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDL   37 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            47788899887 78999999999999997 5888874

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=84.20  E-value=0.41  Score=43.11  Aligned_cols=32  Identities=38%  Similarity=0.463  Sum_probs=28.6

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      ...|+|||+|..|-.+++.|.+.|+ .++|+|.
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~-~v~i~Ek   38 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGR-SVHVIET   38 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECS
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCC-CEEEEEc
Confidence            4579999999999999999999999 5888884

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=84.13  E-value=0.49  Score=41.57  Aligned_cols=35  Identities=26%  Similarity=0.414  Sum_probs=30.0

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHH-hCCCcEEEEeC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLAL-SGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~-~Gv~~i~liD~   44 (410)
                      +..+.-|+|||+|..|..+|..|++ .|.+ ++|+|.
T Consensus        30 ~~~e~DViVIGaGpaGL~aA~~LA~~~G~~-V~vlE~   65 (278)
T d1rp0a1          30 TYAETDVVVVGAGSAGLSAAYEISKNPNVQ-VAIIEQ   65 (278)
T ss_dssp             HHTEEEEEEECCSHHHHHHHHHHHTSTTSC-EEEEES
T ss_pred             cccCCCEEEECCCHHHHHHHHHHHHccCCe-EEEEec
Confidence            4557789999999999999999997 5886 888884

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.02  E-value=0.46  Score=42.02  Aligned_cols=29  Identities=31%  Similarity=0.507  Sum_probs=26.9

Q ss_pred             EEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           15 VLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        15 VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      |+|||+|-.|...|..|++.|. +++|+|.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~-~V~VlE~   30 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGL-NVVVLEA   30 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTC-CEEEEES
T ss_pred             EEEECCCHHHHHHHHHHHhCCC-CEEEEec
Confidence            8999999999999999999998 6999884

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=83.95  E-value=0.62  Score=39.23  Aligned_cols=35  Identities=23%  Similarity=0.333  Sum_probs=30.9

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccC
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE   48 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve   48 (410)
                      -|+|||+|+-|...+..++++|-+.+.|+|...+.
T Consensus         5 DviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~~   39 (238)
T d1aoga1           5 DLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVH   39 (238)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCEEEEEEeeccc
Confidence            48899999999999999999999999999866543

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=83.90  E-value=0.3  Score=42.48  Aligned_cols=35  Identities=14%  Similarity=0.357  Sum_probs=29.8

Q ss_pred             HHhCCcEEEECCc---HHHHHHHHHHHHhCCCcEEEEeC
Q 015243            9 AIKGAKVLMVGAG---GIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus         9 ~L~~~~VlvvG~G---giG~ev~knLa~~Gv~~i~liD~   44 (410)
                      +|++++++|.|++   |||.++++.|+..|.. +.+.|.
T Consensus         2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~-V~i~~~   39 (258)
T d1qsga_           2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAE-LAFTYQ   39 (258)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCE-EEEEES
T ss_pred             cCCCCEEEEECCCCchhHHHHHHHHHHHcCCE-EEEEeC
Confidence            4788999999864   6999999999999977 778763

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=83.88  E-value=0.39  Score=41.92  Aligned_cols=34  Identities=21%  Similarity=0.422  Sum_probs=29.2

Q ss_pred             HhCCcEEEECCc---HHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVGAG---GIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG~G---giG~ev~knLa~~Gv~~i~liD~   44 (410)
                      |++++++|.|++   |||.++++.|+..|.. +.+.|.
T Consensus         6 L~gK~alITGas~~~GIG~aiA~~la~~Ga~-V~i~~~   42 (256)
T d1ulua_           6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAE-VALSYQ   42 (256)
T ss_dssp             CTTCEEEEESCCCSSSHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            678999999975   7999999999999975 777763

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.87  E-value=0.44  Score=42.01  Aligned_cols=34  Identities=32%  Similarity=0.541  Sum_probs=29.6

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      |++++++|.| .+|||-++++.|+..|. ++.++|.
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r   46 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTAR   46 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence            7889999998 56899999999999996 5888774

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=83.78  E-value=0.45  Score=38.71  Aligned_cols=31  Identities=32%  Similarity=0.432  Sum_probs=26.3

Q ss_pred             CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      ..+|+|+|+|++|...+..+-.+|...+ ++|
T Consensus        31 G~~VlI~GaG~vG~~a~qlak~~Ga~~i-~~~   61 (168)
T d1uufa2          31 GKKVGVVGIGGLGHMGIKLAHAMGAHVV-AFT   61 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred             CCEEEEeccchHHHHHHHHhhcccccch-hhc
Confidence            4679999999999999988888998766 565

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=83.68  E-value=2.8  Score=36.01  Aligned_cols=29  Identities=38%  Similarity=0.724  Sum_probs=25.4

Q ss_pred             EEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           15 VLMVG-AGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        15 VlvvG-~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      |||.| +|=||+.+++.|+..|...++.+|
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d   31 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVD   31 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEE
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEE
Confidence            67887 556999999999999988899988

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=83.61  E-value=1.9  Score=35.62  Aligned_cols=105  Identities=10%  Similarity=-0.015  Sum_probs=54.0

Q ss_pred             cEEEECCcHHHHHHHHHHHHhC-CCcEEEEeCCccCcccCccccC-CCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           14 KVLMVGAGGIGCELLKTLALSG-FQDIHIIDMDTIEVSNLNRQFL-FRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~G-v~~i~liD~D~Ve~sNL~Rq~l-f~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      ||.|.|.|.||..+++.|...+ +.-+.|-|...-.   .....+ +...-.+.......   ..+.  .         +
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~--~---------i   65 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNY---EAFIAHRRGIRIYVPQQSIKK---FEES--G---------I   65 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSH---HHHHHHHTTCCEECCGGGHHH---HHTT--T---------C
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcH---HHHHhcccCcceeccCcccee---cccc--c---------e
Confidence            7999999999999999998653 3323333322100   000000 01011111111110   1110  0         1


Q ss_pred             CCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecc
Q 015243           92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT  136 (410)
Q Consensus        92 ~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~  136 (410)
                      .-.....+.+.+.|+|++|+.....+... +...+.++..|-++.
T Consensus        66 ~v~g~~~~~~~~vDiViecTG~f~~~e~a-~~hl~~G~KvIi~~~  109 (178)
T d1b7go1          66 PVAGTVEDLIKTSDIVVDTTPNGVGAQYK-PIYLQLQRNAIFQGG  109 (178)
T ss_dssp             CCCCCHHHHHHHCSEEEECCSTTHHHHHH-HHHHHTTCEEEECTT
T ss_pred             ecCCchhhhhhcCCEEEECCCCcCCHHHH-HHHHHcCCEEEEECC
Confidence            10112345567899999999987666553 444567777776543

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=83.49  E-value=0.82  Score=39.43  Aligned_cols=102  Identities=17%  Similarity=0.217  Sum_probs=56.6

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV   91 (410)
Q Consensus        13 ~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i   91 (410)
                      +||+|.|+ |-||+.+++.|...|.. +..+|...+              |+..  .+.+.+.++...|++-+..  ...
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~-Vi~~~r~~~--------------D~~d--~~~~~~~l~~~~~d~vih~--a~~   62 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVE-VIPTDVQDL--------------DITN--VLAVNKFFNEKKPNVVINC--AAH   62 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEE-EEEECTTTC--------------CTTC--HHHHHHHHHHHCCSEEEEC--CCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCE-EEEeechhc--------------cCCC--HHHHHHHHHHcCCCEEEee--ccc
Confidence            57999996 99999999999988864 666664332              2322  2345667777777654332  111


Q ss_pred             CCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccC
Q 015243           92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTG  138 (410)
Q Consensus        92 ~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G  138 (410)
                      ...   .......+..  ...|......+...|......++...+.+
T Consensus        63 ~~~---~~~~~~~~~~--~~~n~~~~~~~~~~~~~~~~~~~~~ss~~  104 (281)
T d1vl0a_          63 TAV---DKCEEQYDLA--YKINAIGPKNLAAAAYSVGAEIVQISTDY  104 (281)
T ss_dssp             CCH---HHHHHCHHHH--HHHHTHHHHHHHHHHHHHTCEEEEEEEGG
T ss_pred             ccc---ccccccchhh--cccccccccccccccccccccccccccce
Confidence            110   0000000000  01133445556677777777777665443

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=83.26  E-value=0.41  Score=41.96  Aligned_cols=37  Identities=27%  Similarity=0.366  Sum_probs=31.9

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      .|++++|+|-|.|.+|..+++.|...|..-+.+.|.+
T Consensus        28 ~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~   64 (242)
T d1v9la1          28 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDIN   64 (242)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeeccc
Confidence            4788999999999999999999999997766666643

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=83.17  E-value=2.5  Score=38.34  Aligned_cols=91  Identities=21%  Similarity=0.278  Sum_probs=51.2

Q ss_pred             CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC-----CCCeEE
Q 015243           12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR-----PQMSIT   85 (410)
Q Consensus        12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~n-----p~v~i~   85 (410)
                      .+||||.| +|=||+.+++.|...+--+++++|       ||.|-.  ...+....+.......-....     .+..+.
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D-------~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVD-------SLVGTH--GKSDHVETRENVARKLQQSDGPKPPWADRYAA   72 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEE-------CCTTTT--TCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEe-------cCCccc--ccchhhhhhhhHHHHhhhhccccccccccceE
Confidence            46899998 566999999999875545789988       333221  122233334333322221111     122345


Q ss_pred             EEccCCCCCcchHhhh---ccCcEEEEcc
Q 015243           86 AHHANVKDPKFNVEFF---KQFNVVLNGL  111 (410)
Q Consensus        86 ~~~~~i~~~~~~~~~~---~~~DvVi~a~  111 (410)
                      ....++++...-.+.+   .++|+|+-+.
T Consensus        73 ~~~~Di~d~~~l~~~~~~~~~~d~ViH~A  101 (383)
T d1gy8a_          73 LEVGDVRNEDFLNGVFTRHGPIDAVVHMC  101 (383)
T ss_dssp             EEESCTTCHHHHHHHHHHSCCCCEEEECC
T ss_pred             EEECcccCHHHhhhhhhccceeehhhccc
Confidence            5566775543333444   3579999853

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.83  E-value=1.9  Score=37.97  Aligned_cols=32  Identities=28%  Similarity=0.404  Sum_probs=25.6

Q ss_pred             CcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243           13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD   45 (410)
Q Consensus        13 ~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D   45 (410)
                      ++|||.|+ |-||+.+++.|...|.. +..+|..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~-V~~~~r~   33 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYR-VHGLVAR   33 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCE-EEEEECC
Confidence            58999985 56999999999998864 6666654

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.40  E-value=0.51  Score=38.79  Aligned_cols=36  Identities=25%  Similarity=0.414  Sum_probs=31.9

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT   46 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~   46 (410)
                      |..++|+|+|.|-+|..+|+.|...|.. ++++|.|.
T Consensus        22 l~Gk~v~V~GyG~iG~g~A~~~rg~G~~-V~v~e~dp   57 (163)
T d1li4a1          22 IAGKVAVVAGYGDVGKGCAQALRGFGAR-VIITEIDP   57 (163)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCH
T ss_pred             ecCCEEEEeccccccHHHHHHHHhCCCe-eEeeeccc
Confidence            5678999999999999999999999955 88988775

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=82.39  E-value=0.48  Score=39.51  Aligned_cols=83  Identities=19%  Similarity=0.233  Sum_probs=50.6

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCC
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK   92 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~   92 (410)
                      +||.|||+|-+|..+|-.|+ .|. +++.+|.|.=-...|+...    ..+..+.   +.+.++...  .+.....    
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~-~V~g~Din~~~v~~l~~g~----~p~~e~~---l~~~~~~~~--~~~~~~~----   65 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQN-EVTIVDILPSKVDKINNGL----SPIQDEY---IEYYLKSKQ--LSIKATL----   65 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTS-EEEEECSCHHHHHHHHTTC----CSSCCHH---HHHHHHHSC--CCEEEES----
T ss_pred             CEEEEECCChhHHHHHHHHH-CCC-cEEEEECCHHHHHHHhhcc----cccchhh---HHHHhhhhh--hhhhccc----
Confidence            57999999999999998776 476 6889998876666665432    1233322   233333322  2222211    


Q ss_pred             CCcchHhhhccCcEEEEccCC
Q 015243           93 DPKFNVEFFKQFNVVLNGLDN  113 (410)
Q Consensus        93 ~~~~~~~~~~~~DvVi~a~Dn  113 (410)
                         ....-+.++|+|+.++..
T Consensus        66 ---~~~~~~~~~~ii~v~vpt   83 (196)
T d1dlja2          66 ---DSKAAYKEAELVIIATPT   83 (196)
T ss_dssp             ---CHHHHHHHCSEEEECCCC
T ss_pred             ---hhhhhhhccccccccCCc
Confidence               112335778888888754

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=82.33  E-value=0.62  Score=35.02  Aligned_cols=32  Identities=25%  Similarity=0.353  Sum_probs=26.4

Q ss_pred             HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEE
Q 015243            9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIH   40 (410)
Q Consensus         9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~   40 (410)
                      ..++++|+|||.|.-|..++..|+..+-.-+.
T Consensus        29 ~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~   60 (107)
T d2gv8a2          29 LFVGESVLVVGGASSANDLVRHLTPVAKHPIY   60 (107)
T ss_dssp             GGTTCCEEEECSSHHHHHHHHHHTTTSCSSEE
T ss_pred             hcCCCeEEEECCCCCHHHHHHHHHHhcCEEEE
Confidence            46899999999999999999999876544333

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=82.32  E-value=0.45  Score=42.18  Aligned_cols=33  Identities=27%  Similarity=0.558  Sum_probs=29.0

Q ss_pred             HhCCcEEEECCc---HHHHHHHHHHHHhCCCcEEEEe
Q 015243           10 IKGAKVLMVGAG---GIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        10 L~~~~VlvvG~G---giG~ev~knLa~~Gv~~i~liD   43 (410)
                      |++++++|.|++   |||-++++.|+..|.. +.+.|
T Consensus         6 L~gK~alVTGass~~GIG~aiA~~la~~Ga~-Vvi~~   41 (297)
T d1d7oa_           6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAE-ILVGT   41 (297)
T ss_dssp             CTTCEEEEECCSSSSSHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCCE-EEEEe
Confidence            688999999986   7999999999999976 66766

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=82.09  E-value=1.2  Score=37.96  Aligned_cols=91  Identities=15%  Similarity=0.115  Sum_probs=51.2

Q ss_pred             CCcEEEECCcHHHHH-HHHHHHHh-CCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC-CeEEEEc
Q 015243           12 GAKVLMVGAGGIGCE-LLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ-MSITAHH   88 (410)
Q Consensus        12 ~~~VlvvG~GgiG~e-v~knLa~~-Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~-v~i~~~~   88 (410)
                      .-||.|||||.+|.. ++..+... |+.-+.++|                   ....+++.+   .++.+.. .++..+ 
T Consensus        33 ~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d-------------------~~~~~a~~~---~~~~~i~~~~~~~~-   89 (221)
T d1h6da1          33 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVS-------------------GNAEKAKIV---AAEYGVDPRKIYDY-   89 (221)
T ss_dssp             CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEEC-------------------SCHHHHHHH---HHHTTCCGGGEECS-
T ss_pred             CEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEec-------------------CCHHHHHHH---HHhhcccccccccc-
Confidence            468999999999974 56666544 232233444                   222333333   3333321 223222 


Q ss_pred             cCCCCCcchHhhh--ccCcEEEEccCChHHHHHHHHHHHHCCCcEE
Q 015243           89 ANVKDPKFNVEFF--KQFNVVLNGLDNLDARRHVNRLCLAADVPLV  132 (410)
Q Consensus        89 ~~i~~~~~~~~~~--~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i  132 (410)
                      .++      ++++  .+.|+|+.|+.+ .....+...|.+++++++
T Consensus        90 ~d~------~ell~~~~iD~V~I~tp~-~~H~~~~~~al~~gk~v~  128 (221)
T d1h6da1          90 SNF------DKIAKDPKIDAVYIILPN-SLHAEFAIRAFKAGKHVM  128 (221)
T ss_dssp             SSG------GGGGGCTTCCEEEECSCG-GGHHHHHHHHHHTTCEEE
T ss_pred             Cch------hhhcccccceeeeeccch-hhhhhHHHHhhhcchhhh
Confidence            112      1333  368999998865 456666777778888766

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=81.83  E-value=0.19  Score=39.48  Aligned_cols=88  Identities=16%  Similarity=0.179  Sum_probs=51.9

Q ss_pred             CCcEEEECCcHHHHHHHHHHHH-hCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243           12 GAKVLMVGAGGIGCELLKTLAL-SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN   90 (410)
Q Consensus        12 ~~~VlvvG~GgiG~ev~knLa~-~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~   90 (410)
                      +-+|+|+|+|.+|..+++.+-. .|+.=+.++|.|.   +-.+++..                       ++.|... +.
T Consensus         3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~---~k~G~~I~-----------------------Gi~V~~~-~~   55 (126)
T d2dt5a2           3 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDP---EKVGRPVR-----------------------GGVIEHV-DL   55 (126)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCT---TTTTCEET-----------------------TEEEEEG-GG
T ss_pred             CceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCch---HhcCCEEC-----------------------CEEEecH-HH
Confidence            3489999999999999987643 3555677788664   22333321                       2344321 11


Q ss_pred             CCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEE
Q 015243           91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLV  132 (410)
Q Consensus        91 i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i  132 (410)
                      +     ..-.-+..++++.++.+.. +..+-+.|.+++++-+
T Consensus        56 l-----~~~~~~~i~iai~~i~~~~-~~~I~d~l~~~gIk~I   91 (126)
T d2dt5a2          56 L-----PQRVPGRIEIALLTVPREA-AQKAADLLVAAGIKGI   91 (126)
T ss_dssp             H-----HHHSTTTCCEEEECSCHHH-HHHHHHHHHHHTCCEE
T ss_pred             H-----HHHHhhcccEEEEeCCHHH-HHHHHHHHHHcCCCEE
Confidence            1     1111234577788887544 4456667778887744

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=81.77  E-value=0.52  Score=42.13  Aligned_cols=31  Identities=35%  Similarity=0.553  Sum_probs=26.6

Q ss_pred             cEEEECCcHHHHHHHHHHHH-----hCCCcEEEEeCC
Q 015243           14 KVLMVGAGGIGCELLKTLAL-----SGFQDIHIIDMD   45 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~-----~Gv~~i~liD~D   45 (410)
                      -|+|||+|..|+.+|..|+.     .|+. ++|+|..
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~-v~vlEr~   44 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLK-VRIIDKR   44 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCC-EEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCc-EEEEcCC
Confidence            48999999999999999974     6776 8898854

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.70  E-value=0.7  Score=38.76  Aligned_cols=30  Identities=23%  Similarity=0.402  Sum_probs=26.9

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      -|+|||+|+.|...|..+++.|.+ +.|+|.
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~k-V~lie~   36 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFN-TACVEK   36 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCC-EEEEES
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCc-EEEEEe
Confidence            489999999999999999999975 888874

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.47  E-value=0.65  Score=39.38  Aligned_cols=39  Identities=23%  Similarity=0.400  Sum_probs=31.9

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCC--cEEEEeCCccCccc
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMDTIEVSN   51 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~--~i~liD~D~Ve~sN   51 (410)
                      ++|-|||+||-||.++..|...|+.  ++..+|.|.-..++
T Consensus         2 a~IkViGvGGaG~n~vn~~~~~~~~~v~~iainTD~~~L~~   42 (198)
T d1rq2a1           2 AVIKVVGIGGGGVNAVNRMIEQGLKGVEFIAINTDAQALLM   42 (198)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESCHHHHHH
T ss_pred             CeEEEEEeCchHHHHHHHHHHcCCCCceEEEEcchHHHHhc
Confidence            4688999999999999999999985  56777887655443

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=81.46  E-value=0.69  Score=39.18  Aligned_cols=30  Identities=23%  Similarity=0.388  Sum_probs=27.0

Q ss_pred             cEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      -|+|||+|+.|.+.+..+++.|. +++|+|.
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~-~V~viE~   37 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGL-KVAIVER   37 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEES
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-eEEEEec
Confidence            38999999999999999999997 5888874

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=81.43  E-value=0.84  Score=40.32  Aligned_cols=36  Identities=25%  Similarity=0.429  Sum_probs=30.9

Q ss_pred             CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCc
Q 015243           13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEV   49 (410)
Q Consensus        13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~   49 (410)
                      --|+|||+|..|+..|..|++.|.+ ++|+|...+--
T Consensus        17 ~DVlVIG~G~aGl~aA~~la~~G~~-V~lvEK~~~~g   52 (308)
T d1y0pa2          17 VDVVVVGSGGAGFSAAISATDSGAK-VILIEKEPVIG   52 (308)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSSSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCc-EEEEecCCCCC
Confidence            3599999999999999999999975 89998766543

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=81.33  E-value=0.81  Score=34.92  Aligned_cols=39  Identities=18%  Similarity=0.328  Sum_probs=32.4

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcc
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVS   50 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~s   50 (410)
                      ...||.|+|.|-+|--++..-.++|+. +.+.|++.-.+.
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~lG~~-v~v~d~~~~~PA   48 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRLGVE-VIAVDRYADAPA   48 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCE-EEEEESSTTCGG
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCCCE-EEEEcCCCCCch
Confidence            346899999999999999999999987 677887765544

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.03  E-value=0.68  Score=40.19  Aligned_cols=34  Identities=29%  Similarity=0.536  Sum_probs=29.1

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM   44 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~   44 (410)
                      |++++++|.| .+|||.++++.|+..|.. +.++|.
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~Ga~-V~~~~r   37 (242)
T d1cyda_           3 FSGLRALVTGAGKGIGRDTVKALHASGAK-VVAVTR   37 (242)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEEC
Confidence            5678889988 579999999999999965 888874

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.00  E-value=0.58  Score=40.56  Aligned_cols=64  Identities=23%  Similarity=0.277  Sum_probs=42.2

Q ss_pred             HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchH-HHHHHHHHHhh
Q 015243           10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK-AKVARDAVLKF   78 (410)
Q Consensus        10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~K-a~~a~~~l~~~   78 (410)
                      |++++++|.| .+|||.++++.|+..|.. +.++|.+.-...++    ++-.-|+..+. .+.+.+.+.+.
T Consensus         5 l~gK~~lITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~~~~~----~~~~~Dv~~~~~v~~~~~~~~~~   70 (237)
T d1uzma1           5 FVSRSVLVTGGNRGIGLAIAQRLAADGHK-VAVTHRGSGAPKGL----FGVEVDVTDSDAVDRAFTAVEEH   70 (237)
T ss_dssp             CCCCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSSCCCTTS----EEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCcchhcCc----eEEEEecCCHHHHHHHHHHHHHh
Confidence            6788888888 568999999999999964 88888765444433    22344565543 23333444433

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=80.65  E-value=0.59  Score=39.29  Aligned_cols=33  Identities=18%  Similarity=0.304  Sum_probs=29.4

Q ss_pred             HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEE
Q 015243           10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHII   42 (410)
Q Consensus        10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~li   42 (410)
                      ++++||+|||+|..|..++..++..|....++.
T Consensus        30 ~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~   62 (235)
T d1w4xa2          30 FSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQ   62 (235)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhhhccccccc
Confidence            678999999999999999999999998766654

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.52  E-value=0.78  Score=36.80  Aligned_cols=32  Identities=25%  Similarity=0.482  Sum_probs=26.8

Q ss_pred             hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243           11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIID   43 (410)
Q Consensus        11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD   43 (410)
                      .+.+|+|.|+|++|.-.+..+...|. ++.++|
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~   58 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVD   58 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTC-EEEEEC
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCC-eEeccC
Confidence            36789999999999998888888887 577766