Citrus Sinensis ID: 015289
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 409 | 2.2.26 [Sep-21-2011] | |||||||
| O34508 | 366 | L-Ala-D/L-Glu epimerase O | yes | no | 0.831 | 0.928 | 0.369 | 3e-49 | |
| Q9WXM1 | 345 | L-Ala-D/L-Glu epimerase O | yes | no | 0.755 | 0.895 | 0.367 | 8e-48 | |
| Q97MK4 | 358 | L-Ala-D/L-Glu epimerase O | yes | no | 0.799 | 0.913 | 0.342 | 2e-38 | |
| O33949 | 385 | Muconate cycloisomerase 1 | N/A | no | 0.855 | 0.909 | 0.270 | 1e-19 | |
| Q43931 | 370 | Muconate cycloisomerase 1 | yes | no | 0.755 | 0.835 | 0.249 | 1e-18 | |
| P51981 | 321 | L-Ala-D/L-Glu epimerase O | N/A | no | 0.718 | 0.915 | 0.298 | 8e-18 | |
| O34514 | 371 | o-succinylbenzoate syntha | no | no | 0.706 | 0.778 | 0.239 | 3e-14 | |
| P42428 | 372 | Chloromuconate cycloisome | no | no | 0.711 | 0.782 | 0.268 | 2e-13 | |
| P08310 | 375 | Muconate cycloisomerase 1 | yes | no | 0.745 | 0.813 | 0.265 | 2e-12 | |
| P27099 | 370 | Chloromuconate cycloisome | N/A | no | 0.511 | 0.564 | 0.279 | 2e-12 |
| >sp|O34508|AEEP_BACSU L-Ala-D/L-Glu epimerase OS=Bacillus subtilis (strain 168) GN=ykfB PE=1 SV=1 | Back alignment and function desciption |
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Score = 196 bits (498), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 133/360 (36%), Positives = 188/360 (52%), Gaps = 20/360 (5%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
R E + VPL PF A + E+V +RI +G VGWGEAP +T + +
Sbjct: 5 RIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSI-- 62
Query: 110 KASEACEVLKESPAMALGSVFGV------VAGLLPGHQFASVRAAVEMALIDAVAKSVSM 163
S VLK PA+ S+ G + LL G+ S +AAVEMAL D A+ +
Sbjct: 63 -ESAIHHVLK--PALLGKSLAGYEAILHDIQHLLTGNM--SAKAAVEMALYDGWAQMCGL 117
Query: 164 PLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRA 222
PL+++ GG +T+ TD T+ + SP E A A Y KQGF TLK+KVGK ++ DI ++
Sbjct: 118 PLYQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQE 177
Query: 223 IRA-VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA 281
IR V LDAN+G++P+EAV + K+ + G+ L EQPVH+DD GL V+
Sbjct: 178 IRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVT--- 234
Query: 282 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLM 340
D + ADES + ++++ AD+INIKL K G+ GA +I + A G+ M
Sbjct: 235 -DATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECM 293
Query: 341 IGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 400
+G M+ET+L + A H +A D D PL+L D G SG+ G G
Sbjct: 294 VGSMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLG 353
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Catalyzes the epimerization of L-Ala-D-Glu to L-Ala-L-Glu and has probably a role in the metabolism of the murein peptide, of which L-Ala-D-Glu is a component. Is also able to catalyze the reverse reaction and the epimerization of the other Ala-X dipeptides L-Ala-L-Asp, L-Ala-L-Leu, L-Ala-L-Met, and L-Ala-L-Ser. Is not able to epimerize other L-Ala-X dipeptides. Is also active with L-Ser-L-Glu and, oddly, L-Pro-L-Glu, but not with L-Glu-L-Glu, L-Lys-L-Glu, L-Lys-L-Ala, or D-Ala-D-Ala. Bacillus subtilis (strain 168) (taxid: 224308) EC: 5EC: .EC: 1EC: .EC: 1EC: .EC: nEC: 1 |
| >sp|Q9WXM1|AEEP_THEMA L-Ala-D/L-Glu epimerase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=TM_0006 PE=1 SV=1 | Back alignment and function description |
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Score = 191 bits (485), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 116/316 (36%), Positives = 173/316 (54%), Gaps = 7/316 (2%)
Query: 63 PFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP 122
PF I S + NV + I L +G G+GEA V E + + + E++
Sbjct: 19 PFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVREMITGID 78
Query: 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITI 182
+F + L F S++AAV+ A +DA+++ + + L GG + I TD T+
Sbjct: 79 VRNYARIFEITDRLFG---FPSLKAAVQFATLDALSQELGTQVCYLLGGKRDEIETDKTV 135
Query: 183 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKP 242
I + + A K ++GF +K+KVG+NLKEDIE + I V + +I+DAN GY
Sbjct: 136 GIDTVENRVKEAKKIFEEGFRVIKIKVGENLKEDIEAVEEIAKVTRGAKYIVDANMGYTQ 195
Query: 243 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVK 302
+EAVE +Y+ G+ ++EQPV R+D EGL V + VAADES R+ DV
Sbjct: 196 KEAVEFARAVYQKGIDIAVYEQPVRREDIEGLKFVRFHSP----FPVAADESARTKFDVM 251
Query: 303 KIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLG 362
++VK D +NIKL K G+ AL I+E+ +SGL LMIG M E+ L + + H + G G
Sbjct: 252 RLVKEEAVDYVNIKLMKSGISDALAIVEIAESSGLKLMIGCMGESSLGINQSVHFALGTG 311
Query: 363 CFKFIDLDTPLLLSED 378
F+F DLD+ L+L E+
Sbjct: 312 AFEFHDLDSHLMLKEE 327
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Catalyzes the epimerization of L-Ala-D-Glu to L-Ala-L-Glu and has probably a role in the metabolism of the murein peptide, of which L-Ala-D-Glu is a component. Is also able to catalyze the reverse reaction and the epimerization of a broad range of other dipeptides; is most efficient with L-Ala-D/L-Phe, L-Ala-D/L-Tyr, and L-Ala-D/L-His. Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274) EC: 5 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 |
| >sp|Q97MK4|AEEP_CLOAB L-Ala-D/L-Glu epimerase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=CA_C0192 PE=1 SV=1 | Back alignment and function description |
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Score = 160 bits (405), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 118/345 (34%), Positives = 186/345 (53%), Gaps = 18/345 (5%)
Query: 56 LNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEAC 115
L+VPL PF A ++ V +V ++I G VG+G A VT + ++ ++ +
Sbjct: 11 LSVPLKKPFKTAVRSVNSVNDVVVKIITDTGNVGFGSAASTGLVTGDITES--IEGAINN 68
Query: 116 EVLKESPAMALGSVFGVVAGL---LPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV 172
+ + M + ++ L + G+ S +AAV++AL D + PL++L GG
Sbjct: 69 YIKRSIVGMDIEDFEAILIKLDNCIVGN--TSAKAAVDIALYDLYGQRYGAPLYKLLGGF 126
Query: 173 SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSS 231
N + TDITI + SP E + + K G+ TLK+KVGKN K DI+ +R IR A+ + +
Sbjct: 127 RNKLETDITISVNSPEEMSRDSVDAVKLGYKTLKIKVGKNPKLDIKRMREIRKAIGYEVN 186
Query: 232 FILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 291
+DAN+G++P+EA+ L ++ G+ L EQPV + EGL V+ D + V A
Sbjct: 187 LRIDANQGWQPKEAIRALNEIENEGLKIELVEQPVKAWNLEGLKMVT----DNVNIPVMA 242
Query: 292 DESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLA 350
DES S D ++++ D+INIKL K G+ AL+I + G+ M+G M+E +++
Sbjct: 243 DESVFSPKDAARVMEMRACDLINIKLMKTGGIHNALKICALAEVYGMECMLGCMLEGKVS 302
Query: 351 MGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTN 395
+ A HL+A IDLD P+L S D V V GA+Y +N
Sbjct: 303 VTAAVHLAAAKRIITKIDLDGPVLCSRDDV-----VGGAMYDNSN 342
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Catalyzes the epimerization of L-Ala-D-Glu to L-Ala-L-Glu and has probably a role in the metabolism of the murein peptide, of which L-Ala-D-Glu is a component. Is also able to catalyze the epimerization of L-Ala-D-Asp. Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562) EC: 5 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 |
| >sp|O33949|CATB2_ACILW Muconate cycloisomerase 1-2 OS=Acinetobacter lwoffii GN=catB2 PE=3 SV=2 | Back alignment and function description |
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Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 102/377 (27%), Positives = 177/377 (46%), Gaps = 27/377 (7%)
Query: 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQ 105
V ++ E ++VP I P ++ + ++ V +RI ++G VG GE + + ++
Sbjct: 6 VKIESVETILVDVPTIRPHRLSVATMNCQTLVLVRIRCADGVVGVGEGTTIGGLAYGEES 65
Query: 106 TAMVKA---SEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVS 162
+K + +LK A G+ + GL G++FA R+AVE AL DA A+ +
Sbjct: 66 PESIKVNIDTYFAPLLKGLDATRPGAAMATLRGLFQGNRFA--RSAVETALFDAQAQRLG 123
Query: 163 MPLWRLFGG-------VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLK 214
+PL LFGG V+ T+ + T + AE A ++R KLK+G + L
Sbjct: 124 VPLSELFGGRIRDSVDVAWTLASGDTTRDIDEAERVFEAKRHR-----VFKLKIGSRALA 178
Query: 215 EDIEVLRAI-RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEG 273
+D+ + AI +A+ +D N+ + EA+ ++ + V L EQP+ ++ G
Sbjct: 179 DDVAHVVAIQKALQGRGEVRVDVNQAWTESEAIWAGKRFADASV--ALIEQPIAAENRAG 236
Query: 274 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL-GALEIIEVV 332
L ++ +A+ V + ADE+ D + ADV +K+A+ G L GA + +
Sbjct: 237 LKRLTDLAQ----VPIMADEALHGPADAFALASARAADVFAVKIAQSGGLSGAANVAAIA 292
Query: 333 RASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVY 391
A+ ++L G M+E + + L + G K+ +L PLLL+E+ + + V
Sbjct: 293 LAANIDLYGGTMLEGAVGTIASAQLFSTFGELKWGTELFGPLLLTEEILTEPLRYENFVL 352
Query: 392 KFTNARGHGGFLHWDNI 408
G G L WD I
Sbjct: 353 HLPQGPGLGITLDWDKI 369
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Catalyzes a syn cycloisomerization. Acinetobacter lwoffii (taxid: 28090) EC: 5 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q43931|CATB_ACIAD Muconate cycloisomerase 1 OS=Acinetobacter sp. (strain ADP1) GN=catB PE=3 SV=2 | Back alignment and function description |
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Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/337 (24%), Positives = 166/337 (49%), Gaps = 28/337 (8%)
Query: 56 LNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEAC 115
+++P I P ++ + + V I+I +G VGWGEA + + ++ VKA+
Sbjct: 10 VDIPTIRPHKLSVTTMQTQTLVLIKIITEDGIVGWGEATTIGGLNYGEESPESVKANIDT 69
Query: 116 E----VLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171
+L + + ++ + G++FA + A++ AL++ AK +++P+ L GG
Sbjct: 70 YFKPLLLSIKAPLNVAQTLKLIRKSINGNRFA--KCAIQTALLEIQAKRLNVPVSELLGG 127
Query: 172 VSNTITTDITIPIV-------SPAEAAELASKYRKQGFTTLKLKVGKN-LKEDIEVLRAI 223
+P++ + + AE + T KLK+G N L+ D++ + AI
Sbjct: 128 RIRD-----RLPVLWTLASGDTDKDIAEAKKMIELKRHNTFKLKIGSNPLQHDVDHVIAI 182
Query: 224 -RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAK 282
+A+ P+ S +D N + E V+ +++L + G+ L EQP ++ + L ++
Sbjct: 183 KKALGPEISVRVDVNRAWSELECVKGIQQLQDGGID--LIEQPCAIENTDALARLTA--- 237
Query: 283 DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMI 341
+F V++ ADE D +I K + ADV +K+ + G++ A E+ ++ R +G++L
Sbjct: 238 -RFDVAIMADEVLTGPDSAYRIAKKSGADVFAVKVEQSGGLIEACEVAKIARLAGISLYG 296
Query: 342 GGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSE 377
G M+E + + H + +F +L PLLL++
Sbjct: 297 GTMLEGPVGSIASAHAFSTFETLEFGTELFGPLLLTQ 333
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Catalyzes a syn cycloisomerization. Acinetobacter sp. (strain ADP1) (taxid: 62977) EC: 5 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 |
| >sp|P51981|AEEP_ECOLI L-Ala-D/L-Glu epimerase OS=Escherichia coli (strain K12) GN=ycjG PE=1 SV=2 | Back alignment and function description |
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Score = 92.0 bits (227), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 146/322 (45%), Gaps = 28/322 (8%)
Query: 59 PLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVL 118
PL PF IA + V + G G GE P D AS +++
Sbjct: 12 PLHTPFVIARGSRSEARVVVV-ELEEEGIKGTGECTPYPRYGESD-------ASVMAQIM 63
Query: 119 KESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG-GVSNTIT 177
P + G + +LP + R A++ AL D A+ L L G + T+
Sbjct: 64 SVVPQLEKGLTREELQKILPA---GAARNALDCALWDLAARRQQQSLADLIGITLPETVI 120
Query: 178 TDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDAN 237
T T+ I +P + A AS + G LK+K+ +L E + AIR PD++ I+DAN
Sbjct: 121 TAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDNHLIS--ERMVAIRTAVPDATLIVDAN 178
Query: 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRS 297
E ++ + + L ++GV + EQP+ D L + H + + ADESC +
Sbjct: 179 ESWRAEGLAARCQLLADLGV--AMLEQPLPAQDDAALENFIH------PLPICADESCHT 230
Query: 298 LDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 356
++K + KG +++NIKL K G L AL + RA G +LM+G M+ T A+ A
Sbjct: 231 RSNLKAL-KGRY-EMVNIKLDKTGGLTEALALATEARAQGFSLMLGCMLCTSRAISAALP 288
Query: 357 LSAGLGCFKFIDLDTPLLLSED 378
L + F DLD P L+ D
Sbjct: 289 LVPQVS---FADLDGPTWLAVD 307
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Catalyzes the epimerization of L-Ala-D-Glu to L-Ala-L-Glu and has a role in the recycling of the murein peptide, of which L-Ala-D-Glu is a component. Is also able to catalyze the reverse reaction and the epimerization of all the L-Ala-X dipeptides, except L-Ala-L-Arg, L-Ala-L-Lys and L-Ala-L-Pro. Is also active with L-Gly-L-Glu, L-Phe-L-Glu, and L-Ser-L-Glu, but not with L-Glu-L-Glu, L-Lys-L-Glu, L-Pro-L-Glu, L-Lys-L-Ala, or D-Ala-D-Ala. Escherichia coli (strain K12) (taxid: 83333) EC: 5 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O34514|MENC_BACSU o-succinylbenzoate synthase OS=Bacillus subtilis (strain 168) GN=menC PE=1 SV=1 | Back alignment and function description |
|---|
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 150/313 (47%), Gaps = 24/313 (7%)
Query: 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAED 103
+++++ L++ L PF + L + + + + ++G GWGE P T E
Sbjct: 2 IEIEKITLYHLSMNLKKPFKNSIETLQERKFLIVEAIDTSGVTGWGEVSAFSSPWYTEET 61
Query: 104 QQTA--MVKASEACEVLKES---PAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVA 158
T M+K V+ P+ S+ G++ A +A +E A+ D A
Sbjct: 62 IGTCLHMLKDFFIPNVVGREFNHPSEVPDSL-----ARYKGNRMA--KAGLESAVWDIYA 114
Query: 159 KSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIE 218
K + L GG + + + + + + + Y+K+G+ +K+K+ +D+E
Sbjct: 115 KKKGVSLAEALGGTRDKVPAGVVVGLAPLDDMLKEIESYQKEGYQRIKIKIQPG--QDVE 172
Query: 219 VLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 278
+++AIR+ P + DAN Y+ ++ + L++L + + ++ EQP+ DD H+
Sbjct: 173 LVKAIRSRFPTIPLMADANSSYELKD-ISRLKELDDYHL--MMIEQPLQADDIVDHRHLQ 229
Query: 279 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGL 337
K ++ DES S+DD ++ ++ +INIK ++VG L AL+I ++ + +
Sbjct: 230 KHLK----TAICLDESICSVDDARRAIELGSCKIINIKPSRVGGLTEALKIHDLCKEHHM 285
Query: 338 NLMIGGMVETRLA 350
+ GGM+ET ++
Sbjct: 286 QVWCGGMLETGIS 298
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Converts SHCHC to OSB. Bacillus subtilis (strain 168) (taxid: 224308) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 EC: 3 |
| >sp|P42428|TFDD2_CUPPJ Chloromuconate cycloisomerase OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) GN=tfdDII PE=3 SV=2 | Back alignment and function description |
|---|
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 147/316 (46%), Gaps = 25/316 (7%)
Query: 76 NVAIRIELSNGCVGWGEA--PVLPHVTAEDQQT--AMVKASEACEVLKESPAMALGSVFG 131
+V IR+ G VG GE+ P P + + + A + A V+ E PA+ +
Sbjct: 23 SVLIRLHTKGGIVGIGESITPCGPWWSGDSVEAIQATINHYLAPLVVGE-PALDASRIMA 81
Query: 132 VVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAA 191
+ G + G+ FA +A +EMAL+DAV K V P+ L GG + P+ +
Sbjct: 82 KLHGRVAGNAFA--KAGIEMALLDAVGKIVDAPIHVLLGGRFRD-RLSVAWPLATGDVNQ 138
Query: 192 ELASKYR-----KQGFTTLKLKVGK-NLKEDIEVLRAI-RAVHPDSSFILDANEGYKPQE 244
E+ +R K G KLK+G L +D+ AI + + +S +D NE +
Sbjct: 139 EVDEAFRMLEAGKAG--AFKLKMGALPLAQDLRRALAIAKELEGKASLRVDPNEAWDEPT 196
Query: 245 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 304
+ L L GV + EQPV R + + + + A+ + DE +SL D ++
Sbjct: 197 TMRALAPLEAAGVE--IIEQPVARWNLDAMARIHRQARSMLLI----DEGVQSLHDASEV 250
Query: 305 VKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGC 363
VK A ++++K+ K G + A + ++ A G+++ +G +ET + L+A +
Sbjct: 251 VKRAAAGLVSLKIMKTGGMRPARAMADIANAGGMHVYMGTFLETSIGTAANMQLAASIES 310
Query: 364 FKF-IDLDTPLLLSED 378
+ ++ PLL+ ED
Sbjct: 311 LPYGGEVIGPLLIEED 326
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Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (taxid: 264198) EC: 5 EC: . EC: 5 EC: . EC: 1 EC: . EC: 7 |
| >sp|P08310|CATB_PSEPU Muconate cycloisomerase 1 OS=Pseudomonas putida GN=catB PE=1 SV=4 | Back alignment and function description |
|---|
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 153/332 (46%), Gaps = 27/332 (8%)
Query: 63 PFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA---SEACEVLK 119
P +A + V IR+ S+G G GEA + + + +KA + L
Sbjct: 23 PHKLAMHTMQTQTLVLIRVRCSDGVEGIGEATTIGGLAYGYESPEGIKANIDAHLAPALV 82
Query: 120 ESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG-------V 172
PA + + + L G+ FA ++ +E AL+DA K + +P+ L GG V
Sbjct: 83 GLPADNINAAMLKLDKLAKGNTFA--KSGIESALLDAQGKRLGLPVSELLGGRVRDSLEV 140
Query: 173 SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKN-LKEDIEVLRAIRAVHPDSS 231
+ T+ + T + AEA + R + F KLK+G N L +D++ + AI+ DS+
Sbjct: 141 AWTLASGDTARDI--AEAQHMLEIRRHRVF---KLKIGANPLAQDLKHVVAIKRELGDSA 195
Query: 232 FI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVA 290
+ +D N+ + +A+ + L + G+ L EQP+ R + G ++ + +
Sbjct: 196 SVRVDVNQYWDESQAIRACQVLGDNGID--LIEQPISRINRSGQVRLNQ----RSPAPIM 249
Query: 291 ADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGA-LEIIEVVRASGLNLMIGGMVETRL 349
ADES S++D + A + +K+AK G A L ++ A+G+ L G M+E +
Sbjct: 250 ADESIESVEDAFSLAADGAASIFALKIAKNGGPRAVLRTAQIAEAAGIALYGGTMLEGSI 309
Query: 350 AMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPV 380
+ H L + +L PLLL+E+ V
Sbjct: 310 GTLASAHAFLTLRQLTWGTELFGPLLLTEEIV 341
|
Catalyzes a syn cycloisomerization. Pseudomonas putida (taxid: 303) EC: 5 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 |
| >sp|P27099|TCBD_PSESQ Chloromuconate cycloisomerase OS=Pseudomonas sp. (strain P51) GN=tcbD PE=1 SV=1 | Back alignment and function description |
|---|
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 119/236 (50%), Gaps = 27/236 (11%)
Query: 144 SVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIV----------SPAEAAEL 193
S +AA+++AL D A+++++ + L GG T +IPI A E+
Sbjct: 99 SAKAAIDIALHDLKARALNLSIADLIGGTMRT-----SIPIAWTLASGDTARDIDSALEM 153
Query: 194 ASKYRKQGFTTLKLKVG-KNLKEDIEVLRAI-RAVHPDSSFILDANEGYKPQEAVEVLEK 251
R F K+K+G + +D+E +R+I +AV +S +D N+G+ Q A + +
Sbjct: 154 IETRRHNRF---KVKLGARTPAQDLEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWIPR 210
Query: 252 LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLAD 311
L E GV L EQPV R ++ L ++ ++ GV++ ADES SL ++ + + D
Sbjct: 211 LEEAGVE--LVEQPVPRANFGALRRLT----EQNGVAILADESLSSLSSAFELARDHAVD 264
Query: 312 VINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF 366
++KL + G+ L++ V A+G++ G M+++ + A H+ A L +
Sbjct: 265 AFSLKLCNMGGIANTLKVAAVAEAAGISSYGGTMLDSTVGTAAALHVYATLPSLPY 320
|
Pseudomonas sp. (strain P51) (taxid: 65067) EC: 5 EC: . EC: 5 EC: . EC: 1 EC: . EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 409 | ||||||
| 225456012 | 420 | PREDICTED: l-Ala-D/L-Glu epimerase [Viti | 1.0 | 0.973 | 0.776 | 0.0 | |
| 297734245 | 401 | unnamed protein product [Vitis vinifera] | 0.931 | 0.950 | 0.821 | 0.0 | |
| 224118774 | 387 | predicted protein [Populus trichocarpa] | 0.941 | 0.994 | 0.801 | 0.0 | |
| 356512290 | 387 | PREDICTED: l-Ala-D/L-Glu epimerase-like | 0.946 | 1.0 | 0.791 | 1e-174 | |
| 356525058 | 442 | PREDICTED: l-Ala-D/L-Glu epimerase-like | 0.946 | 0.875 | 0.786 | 1e-173 | |
| 449439093 | 432 | PREDICTED: l-Ala-D/L-Glu epimerase-like | 0.933 | 0.884 | 0.766 | 1e-169 | |
| 255567834 | 375 | muconate cycloisomerase, putative [Ricin | 0.858 | 0.936 | 0.817 | 1e-166 | |
| 357133316 | 442 | PREDICTED: l-Ala-D/L-Glu epimerase-like | 0.914 | 0.846 | 0.711 | 1e-155 | |
| 242052167 | 439 | hypothetical protein SORBIDRAFT_03g00667 | 0.919 | 0.856 | 0.702 | 1e-154 | |
| 18401824 | 410 | cytochrome P450, family 77, subfamily A, | 0.958 | 0.956 | 0.684 | 1e-153 |
| >gi|225456012|ref|XP_002277056.1| PREDICTED: l-Ala-D/L-Glu epimerase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/420 (77%), Positives = 359/420 (85%), Gaps = 11/420 (2%)
Query: 1 MLSVGFYL--PFNNIKPQ--KPICQMASSPP-------AAAAPTSFSFKNLTQTFTVDVQ 49
M +GF L F KP+ KP SSP A A PT+F FKNL +TFTVDVQ
Sbjct: 1 MALIGFSLHSQFLCSKPRTSKPRRIGPSSPSGSAVVKMAVATPTTFGFKNLIETFTVDVQ 60
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
RAE RPLNVPLIAPFTIA+SRL++VENVAIRIEL NGCVGWGE P+LP VTAE+Q TAM
Sbjct: 61 RAEGRPLNVPLIAPFTIASSRLERVENVAIRIELKNGCVGWGEGPILPFVTAENQATAMA 120
Query: 110 KASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLF 169
KA+E CEVL+ PAM LG + G + LPGH+FASVRA VEMALIDAVA S+ +PLWRLF
Sbjct: 121 KAAEVCEVLRRRPAMTLGMLLGEIGEALPGHEFASVRAGVEMALIDAVANSMGIPLWRLF 180
Query: 170 GGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPD 229
GGVSN ITTDITIPIVSPA+AAELA+KYRKQGF TLKLKVGKNL DIEVL+AIR HPD
Sbjct: 181 GGVSNAITTDITIPIVSPADAAELATKYRKQGFKTLKLKVGKNLNADIEVLQAIRVAHPD 240
Query: 230 SSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSV 289
FILDANEGY P+EA+EVLEKL+EMGVTPVLFEQPVHRDDWEGLGHVS +A+DK+GVSV
Sbjct: 241 CLFILDANEGYTPKEAIEVLEKLHEMGVTPVLFEQPVHRDDWEGLGHVSKVARDKYGVSV 300
Query: 290 AADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRL 349
AADESCRSL DVKKIV+GNLA+VINIKLAKVGVLGALEII+ RA+GL+LMIGGMVETRL
Sbjct: 301 AADESCRSLVDVKKIVEGNLANVINIKLAKVGVLGALEIIDAARAAGLDLMIGGMVETRL 360
Query: 350 AMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409
AMGFAGHL+AGLGCFKFIDLDTPLLLSEDPV +GY+VSGAVYKFTNARGHGGFLHWDNIA
Sbjct: 361 AMGFAGHLAAGLGCFKFIDLDTPLLLSEDPVQEGYDVSGAVYKFTNARGHGGFLHWDNIA 420
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297734245|emb|CBI15492.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/381 (82%), Positives = 344/381 (90%)
Query: 28 AAAAPTSFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGC 87
A A PT+F FKNL +TFTVDVQRAE RPLNVPLIAPFTIA+SRL++VENVAIRIEL NGC
Sbjct: 2 AVATPTTFGFKNLIETFTVDVQRAEGRPLNVPLIAPFTIASSRLERVENVAIRIELKNGC 61
Query: 88 VGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRA 147
VGWGE P+LP VTAE+Q TAM KA+E CEVL+ PAM LG + G + LPGH+FASVRA
Sbjct: 62 VGWGEGPILPFVTAENQATAMAKAAEVCEVLRRRPAMTLGMLLGEIGEALPGHEFASVRA 121
Query: 148 AVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKL 207
VEMALIDAVA S+ +PLWRLFGGVSN ITTDITIPIVSPA+AAELA+KYRKQGF TLKL
Sbjct: 122 GVEMALIDAVANSMGIPLWRLFGGVSNAITTDITIPIVSPADAAELATKYRKQGFKTLKL 181
Query: 208 KVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 267
KVGKNL DIEVL+AIR HPD FILDANEGY P+EA+EVLEKL+EMGVTPVLFEQPVH
Sbjct: 182 KVGKNLNADIEVLQAIRVAHPDCLFILDANEGYTPKEAIEVLEKLHEMGVTPVLFEQPVH 241
Query: 268 RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALE 327
RDDWEGLGHVS +A+DK+GVSVAADESCRSL DVKKIV+GNLA+VINIKLAKVGVLGALE
Sbjct: 242 RDDWEGLGHVSKVARDKYGVSVAADESCRSLVDVKKIVEGNLANVINIKLAKVGVLGALE 301
Query: 328 IIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVS 387
II+ RA+GL+LMIGGMVETRLAMGFAGHL+AGLGCFKFIDLDTPLLLSEDPV +GY+VS
Sbjct: 302 IIDAARAAGLDLMIGGMVETRLAMGFAGHLAAGLGCFKFIDLDTPLLLSEDPVQEGYDVS 361
Query: 388 GAVYKFTNARGHGGFLHWDNI 408
GAVYKFTNARGHGGFLHWDNI
Sbjct: 362 GAVYKFTNARGHGGFLHWDNI 382
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224118774|ref|XP_002317902.1| predicted protein [Populus trichocarpa] gi|222858575|gb|EEE96122.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/387 (80%), Positives = 349/387 (90%), Gaps = 2/387 (0%)
Query: 22 MASSPPAAAAPTSFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRI 81
MA S P ++F F++L +TF VDV+RAENRPLNVPLIAPFTIA+SRLD+VENVAIRI
Sbjct: 1 MAGSNPKQV--STFEFRDLMETFAVDVKRAENRPLNVPLIAPFTIASSRLDKVENVAIRI 58
Query: 82 ELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQ 141
ELS+GCVGWGEAP+LP VTAEDQ TAM+KA EACE+LK S +M LG V V+ +LPGH+
Sbjct: 59 ELSDGCVGWGEAPILPFVTAEDQSTAMIKAREACELLKNSSSMKLGLVLERVSEILPGHE 118
Query: 142 FASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQG 201
FASVRA VEMALIDAVAKS+++PLW LFGG S++ITTDITIPIVS AEAAELASKYRKQG
Sbjct: 119 FASVRAGVEMALIDAVAKSINVPLWILFGGASDSITTDITIPIVSSAEAAELASKYRKQG 178
Query: 202 FTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261
F TLKLKVGKNLKEDIEVL+AIRAVHPD FILDANEGYKP+EA+EVLE+L++MGVTP+L
Sbjct: 179 FQTLKLKVGKNLKEDIEVLQAIRAVHPDCLFILDANEGYKPEEAIEVLEELHKMGVTPIL 238
Query: 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
FEQPVHRDDWEGLGHV+HIAK K+GVSVAADESCRSL D K+I+KGNLADVINIKLAKVG
Sbjct: 239 FEQPVHRDDWEGLGHVTHIAKGKYGVSVAADESCRSLVDAKRIIKGNLADVINIKLAKVG 298
Query: 322 VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVL 381
V+G LEIIE R SGL+LMIGGMVETRLAMGFAGHL+AG GCFKFIDLDTPLLLSEDPVL
Sbjct: 299 VVGGLEIIEEARTSGLDLMIGGMVETRLAMGFAGHLAAGFGCFKFIDLDTPLLLSEDPVL 358
Query: 382 DGYEVSGAVYKFTNARGHGGFLHWDNI 408
+GYEVSGAVYKFT+A+GH GFL WDN+
Sbjct: 359 EGYEVSGAVYKFTDAQGHAGFLDWDNV 385
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512290|ref|XP_003524853.1| PREDICTED: l-Ala-D/L-Glu epimerase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust.
Identities = 307/388 (79%), Positives = 347/388 (89%), Gaps = 1/388 (0%)
Query: 22 MASSPPAAAAPTSFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRI 81
MAS+ P AAA T F FKNL +TFTVDV RAENRPLNVPLIAPFTIATSRLD+VENVAIR+
Sbjct: 1 MASATPTAAAIT-FGFKNLLETFTVDVHRAENRPLNVPLIAPFTIATSRLDKVENVAIRV 59
Query: 82 ELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQ 141
ELSNG VGWGEAP+LP VTAEDQ TAMVKASEAC L++ PA+ LGS+ G +AG+LPGHQ
Sbjct: 60 ELSNGAVGWGEAPILPFVTAEDQTTAMVKASEACAFLRKCPALTLGSMLGEIAGILPGHQ 119
Query: 142 FASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQG 201
FAS RA +EMA+IDAVA S+ +PLWRLFGG SNTITTDITIPIVSPAEAAELASKY K+G
Sbjct: 120 FASARAGIEMAIIDAVANSIRVPLWRLFGGASNTITTDITIPIVSPAEAAELASKYYKEG 179
Query: 202 FTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261
F TLKLKVGKNL DIEVL+AIR HP FILDANEGY +EAV+VLEKL++MG+TPVL
Sbjct: 180 FKTLKLKVGKNLNADIEVLQAIRVAHPKCQFILDANEGYNSEEAVDVLEKLHDMGLTPVL 239
Query: 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
FEQPVHRDDW+GL +V +IA++++GVSVAADESCRS+ DV KIV+GN+ DVINIKLAKVG
Sbjct: 240 FEQPVHRDDWDGLRYVGNIARERYGVSVAADESCRSIIDVYKIVEGNVLDVINIKLAKVG 299
Query: 322 VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVL 381
V+GALEIIE +A+GL+LMIGGMVETRLAMGFAG L+AGLGCFKFIDLDTPLLLS+DPVL
Sbjct: 300 VMGALEIIEKAKAAGLDLMIGGMVETRLAMGFAGQLAAGLGCFKFIDLDTPLLLSDDPVL 359
Query: 382 DGYEVSGAVYKFTNARGHGGFLHWDNIA 409
+GYEVSGA YKFTNARGHGGFLHWDN+A
Sbjct: 360 EGYEVSGATYKFTNARGHGGFLHWDNLA 387
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525058|ref|XP_003531144.1| PREDICTED: l-Ala-D/L-Glu epimerase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 612 bits (1579), Expect = e-173, Method: Compositional matrix adjust.
Identities = 305/388 (78%), Positives = 345/388 (88%), Gaps = 1/388 (0%)
Query: 22 MASSPPAAAAPTSFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRI 81
MAS+ P AA P +F FKNL +TFTVDV RAENRPLNVPLIAPFTIATSRL +VENVAIR+
Sbjct: 56 MASATPTAA-PITFGFKNLLETFTVDVHRAENRPLNVPLIAPFTIATSRLAKVENVAIRV 114
Query: 82 ELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQ 141
ELSNG VGWGEAP+LP VTAEDQ TAM KASEAC L+ PA+ LGS+ G +AG+LPGHQ
Sbjct: 115 ELSNGSVGWGEAPILPFVTAEDQTTAMAKASEACAFLRRCPALTLGSMLGEIAGILPGHQ 174
Query: 142 FASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQG 201
FASVRA +EMA+IDAVA S+ +PLWRLFGG SNTITTDITIPIVSPAEAAELASKY K+G
Sbjct: 175 FASVRAGMEMAIIDAVANSIRVPLWRLFGGASNTITTDITIPIVSPAEAAELASKYYKEG 234
Query: 202 FTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261
F TLKLKVGKNL DIEVL+AIR HP+ FILDANEGY +EAVEVLEKL++M +TPVL
Sbjct: 235 FKTLKLKVGKNLNADIEVLQAIRVAHPECQFILDANEGYNSEEAVEVLEKLHDMRLTPVL 294
Query: 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
FEQPVHRDDW+GL +V +IA++++GVSVAADESCRS+ DV KIV+GN+ DVINIKLAKVG
Sbjct: 295 FEQPVHRDDWDGLRYVGNIARERYGVSVAADESCRSIVDVYKIVEGNVLDVINIKLAKVG 354
Query: 322 VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVL 381
V+GALEIIE +A+GL+LMIGGMVETRLAMGFAG L+AGLGCFKFIDLDTPLLLS+DPVL
Sbjct: 355 VMGALEIIEKAKAAGLDLMIGGMVETRLAMGFAGQLAAGLGCFKFIDLDTPLLLSDDPVL 414
Query: 382 DGYEVSGAVYKFTNARGHGGFLHWDNIA 409
+GYEVSGA YKFTNARGHGGFLHWDN+A
Sbjct: 415 EGYEVSGATYKFTNARGHGGFLHWDNLA 442
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449439093|ref|XP_004137322.1| PREDICTED: l-Ala-D/L-Glu epimerase-like [Cucumis sativus] gi|449497562|ref|XP_004160436.1| PREDICTED: LOW QUALITY PROTEIN: l-Ala-D/L-Glu epimerase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust.
Identities = 296/386 (76%), Positives = 341/386 (88%), Gaps = 4/386 (1%)
Query: 28 AAAAP----TSFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIEL 83
AAAAP S FKNL +TFTV+VQRAENR LNVPLI PFTIA+SRL+ VENVAIRIEL
Sbjct: 46 AAAAPADSRNSLGFKNLMETFTVNVQRAENRTLNVPLIEPFTIASSRLEMVENVAIRIEL 105
Query: 84 SNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFA 143
SNGCVGWGEAP+LP VTAEDQ TAM KA E CE+L++ P LGS ++ LPGH+FA
Sbjct: 106 SNGCVGWGEAPILPFVTAEDQSTAMAKAEEVCELLRQRPPSTLGSAMMQISETLPGHEFA 165
Query: 144 SVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFT 203
SVRA VEMALIDAVA S+++PLW+LFGGVS++ITTDITIPI S + AA+LA+KYR QGF
Sbjct: 166 SVRAGVEMALIDAVANSINIPLWKLFGGVSDSITTDITIPITSASNAAKLAAKYRDQGFK 225
Query: 204 TLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 263
TLKLKVGK+LK DIEVL++IR VHPD FILDANEGY +EA++VLEKL+E+GVTP LFE
Sbjct: 226 TLKLKVGKDLKSDIEVLKSIRMVHPDCEFILDANEGYDTEEAIQVLEKLHELGVTPTLFE 285
Query: 264 QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL 323
QPVHRD+WEGLG+VS +A+DK+GVSVAADESCRS+DDVK+IV+G+LADVINIKLAKVGVL
Sbjct: 286 QPVHRDNWEGLGNVSRVARDKYGVSVAADESCRSVDDVKRIVEGDLADVINIKLAKVGVL 345
Query: 324 GALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDG 383
GA+EIIEV R SGL+LMIGGMVETRLAMGF+GHL+AGLGCFK+IDLDTPLLLSEDPV G
Sbjct: 346 GAIEIIEVARGSGLSLMIGGMVETRLAMGFSGHLAAGLGCFKYIDLDTPLLLSEDPVHGG 405
Query: 384 YEVSGAVYKFTNARGHGGFLHWDNIA 409
YEVSGAVYKFTN++GHGG+LHWDNIA
Sbjct: 406 YEVSGAVYKFTNSQGHGGYLHWDNIA 431
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255567834|ref|XP_002524895.1| muconate cycloisomerase, putative [Ricinus communis] gi|223535858|gb|EEF37519.1| muconate cycloisomerase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust.
Identities = 287/351 (81%), Positives = 317/351 (90%)
Query: 35 FSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAP 94
F F++L +T TVDV+RAENRPLNVPLIAPFTIA+SRLD+VENVAIRIELSNGC GWGE P
Sbjct: 16 FGFRDLMETLTVDVERAENRPLNVPLIAPFTIASSRLDKVENVAIRIELSNGCAGWGETP 75
Query: 95 VLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALI 154
+LP VTAEDQ TAMVKA EACE+LK SP M LGS+ + +LPGHQFASVRA VEMALI
Sbjct: 76 ILPFVTAEDQPTAMVKAREACELLKSSPPMTLGSLLEKIGAILPGHQFASVRAGVEMALI 135
Query: 155 DAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLK 214
DAVA S+ +PLWRLFGGVS++ITTDITIPIVSP EAAELASKYRKQGF TLKLKVGKNLK
Sbjct: 136 DAVANSIGIPLWRLFGGVSDSITTDITIPIVSPTEAAELASKYRKQGFKTLKLKVGKNLK 195
Query: 215 EDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGL 274
DIEVL+AIRAV+PD FILDANEGYKP+EA+EVLEKL+EM VTP+LFEQPVHRDDWEGL
Sbjct: 196 ADIEVLQAIRAVYPDCLFILDANEGYKPKEAIEVLEKLHEMQVTPILFEQPVHRDDWEGL 255
Query: 275 GHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRA 334
GHV+ IAK K+GVSVAADESCR L DVKKIV+GNLADVINIKLAKVGV+ ALEIIE+ RA
Sbjct: 256 GHVTSIAKGKYGVSVAADESCRGLIDVKKIVEGNLADVINIKLAKVGVVEALEIIELARA 315
Query: 335 SGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYE 385
S L+LMIGGMVETRLAMGFAGHL+AGLGCFKF+DLDTPLLL+EDPV GYE
Sbjct: 316 SRLDLMIGGMVETRLAMGFAGHLAAGLGCFKFVDLDTPLLLAEDPVHGGYE 366
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357133316|ref|XP_003568272.1| PREDICTED: l-Ala-D/L-Glu epimerase-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 266/374 (71%), Positives = 307/374 (82%)
Query: 34 SFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA 93
+F F+ L +TF+VDV AE RPL+VPL APFTIA+SRL+ V NVA+R+ELS+G VGWGEA
Sbjct: 64 TFGFEALKETFSVDVSAAEARPLDVPLAAPFTIASSRLESVSNVAVRVELSSGAVGWGEA 123
Query: 94 PVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMAL 153
PVLP VTAEDQ A+ AC L +P+ LG+V VA LPGH FAS RA VEMA+
Sbjct: 124 PVLPSVTAEDQPAALAAVGRACAKLAGAPSAPLGAVLEDVAAALPGHAFASARAGVEMAV 183
Query: 154 IDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNL 213
IDAVA S+ +PLWRLFGG SN++TTDITIPIV+P EAA+LA+KYR QGF TLKLKVGKNL
Sbjct: 184 IDAVANSIRVPLWRLFGGASNSVTTDITIPIVTPNEAAQLAAKYRGQGFQTLKLKVGKNL 243
Query: 214 KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEG 273
DIEVL+AIR VHPD SFILDANEGY +A+EVL++L EMGVTPVLFEQPVHRDDWEG
Sbjct: 244 NSDIEVLKAIRLVHPDCSFILDANEGYTANQAIEVLDRLNEMGVTPVLFEQPVHRDDWEG 303
Query: 274 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVR 333
L VS A +K+ V+VAADESCR L D +KI+ GNL+ VINIKLAK+GVLGALE+I+ R
Sbjct: 304 LRDVSTAAMEKYRVAVAADESCRGLLDAQKIINGNLSHVINIKLAKLGVLGALEVIDAAR 363
Query: 334 ASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKF 393
+G+ LMIGGMVETR+AMGFAGHL+AGLGCF FIDLDTPLLLSEDPV GYE SG +YKF
Sbjct: 364 KAGIALMIGGMVETRIAMGFAGHLAAGLGCFSFIDLDTPLLLSEDPVYGGYEASGPLYKF 423
Query: 394 TNARGHGGFLHWDN 407
TNARGHGGFLH DN
Sbjct: 424 TNARGHGGFLHLDN 437
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242052167|ref|XP_002455229.1| hypothetical protein SORBIDRAFT_03g006670 [Sorghum bicolor] gi|241927204|gb|EES00349.1| hypothetical protein SORBIDRAFT_03g006670 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 264/376 (70%), Positives = 310/376 (82%)
Query: 34 SFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA 93
SF F L +TF+VDV A+ RPL+VPL APFTIA+SRL V NVA+R+EL +G VGWGEA
Sbjct: 62 SFGFDALKETFSVDVAAADARPLDVPLAAPFTIASSRLVAVSNVAVRVELRSGAVGWGEA 121
Query: 94 PVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMAL 153
PVLP VTAEDQ A+ A AC L+++ A LG++ VA +LPGH FAS RA VEMAL
Sbjct: 122 PVLPSVTAEDQPAALDAAGRACAALEDASAAPLGALLQDVASVLPGHAFASARAGVEMAL 181
Query: 154 IDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNL 213
IDAVA S+ +PLWRLFGG S+++TTDITIPIV+P EAA+LA+KYR QGF TLKLKVGKNL
Sbjct: 182 IDAVANSIRIPLWRLFGGASDSVTTDITIPIVTPNEAAQLAAKYRGQGFQTLKLKVGKNL 241
Query: 214 KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEG 273
DIEVL+AIR VHPD SFILDANEGY +A+EVL++L EMGVTPVLFEQPVHRDDW+G
Sbjct: 242 NSDIEVLKAIRLVHPDCSFILDANEGYTANQAIEVLDRLNEMGVTPVLFEQPVHRDDWDG 301
Query: 274 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVR 333
L VS +A +K+ V+VAADESCRSL D +KI++GNLA VINIKLAK+G+LGALEII+ R
Sbjct: 302 LRDVSSVAMEKYKVAVAADESCRSLLDAQKIIQGNLAHVINIKLAKLGILGALEIIDAAR 361
Query: 334 ASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKF 393
+ ++LMIGGMVETR+AMGFAGHL+AGLGCF F+DLDTPLLLSEDPV GYE G +YKF
Sbjct: 362 KANISLMIGGMVETRIAMGFAGHLAAGLGCFSFVDLDTPLLLSEDPVYGGYEAFGPLYKF 421
Query: 394 TNARGHGGFLHWDNIA 409
TNARGHGGFLH DN A
Sbjct: 422 TNARGHGGFLHLDNDA 437
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18401824|ref|NP_566605.1| cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene [Arabidopsis thaliana] gi|13878121|gb|AAK44138.1|AF370323_1 unknown protein [Arabidopsis thaliana] gi|17104793|gb|AAL34285.1| unknown protein [Arabidopsis thaliana] gi|332642553|gb|AEE76074.1| cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 275/402 (68%), Positives = 329/402 (81%), Gaps = 10/402 (2%)
Query: 8 LPFNNIKPQKPICQMASSPPAAAAPTSFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIA 67
L F N P+ PI M+ + FK LT+ FTV V +AENR LNV L++PFTIA
Sbjct: 18 LNFQN-SPKSPITVMSKTS---------KFKTLTENFTVRVLKAENRELNVALLSPFTIA 67
Query: 68 TSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALG 127
+SRLD V NVAIRIEL++G VGWGEAP+LP VTAEDQ AMVKA EA E L+E P M LG
Sbjct: 68 SSRLDSVSNVAIRIELNDGFVGWGEAPILPSVTAEDQIMAMVKAREASEFLRELPEMKLG 127
Query: 128 SVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSP 187
+V + LPGHQFASVRA +EMA+IDA AKSV +PLW+LFGG S+TITTDITIPIVSP
Sbjct: 128 NVLQEIGRFLPGHQFASVRAGMEMAMIDAAAKSVRVPLWKLFGGASSTITTDITIPIVSP 187
Query: 188 AEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVE 247
AEA+ LASKYRK+GF TLKLKVGKNLK DIEVL+AIRAVHP SFILDANEGY+ +EAV+
Sbjct: 188 AEASVLASKYRKRGFETLKLKVGKNLKADIEVLQAIRAVHPTCSFILDANEGYQTEEAVK 247
Query: 248 VLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 307
VLE L+EM VTPVLFEQPVHRD+WEGL HV+ AK++FGVS+AADESCR L D+KKI++G
Sbjct: 248 VLETLHEMKVTPVLFEQPVHRDNWEGLSHVTRTAKNRFGVSIAADESCRGLTDLKKIIEG 307
Query: 308 NLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI 367
N+ DV+NIKLAK G+L +LE+IE+ R+SG+ LMIGGMVETRLAMGF+GHL+AGLGCF+FI
Sbjct: 308 NIVDVVNIKLAKTGILESLEVIELARSSGIELMIGGMVETRLAMGFSGHLAAGLGCFRFI 367
Query: 368 DLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409
DLDTPLLL++DPV GY+ GAVY+F + GHGG+L W+++A
Sbjct: 368 DLDTPLLLADDPVQGGYKACGAVYEFKDEGGHGGYLQWNDVA 409
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 409 | ||||||
| UNIPROTKB|Q81PF7 | 350 | BAS2659 "Mandelate racemase/mu | 0.779 | 0.911 | 0.345 | 1.5e-42 | |
| TIGR_CMR|BA_2850 | 350 | BA_2850 "mandelate racemase/mu | 0.779 | 0.911 | 0.345 | 1.5e-42 | |
| TIGR_CMR|BA_0339 | 369 | BA_0339 "mandelate racemase/mu | 0.767 | 0.850 | 0.258 | 4.2e-31 | |
| UNIPROTKB|Q71WQ8 | 374 | LMOf2365_2493 "N-acylamino aci | 0.669 | 0.732 | 0.299 | 1.8e-25 | |
| UNIPROTKB|P51981 | 321 | ycjG "L-Ala-D/L-Glu epimerase" | 0.718 | 0.915 | 0.301 | 6.8e-23 | |
| TIGR_CMR|SPO_3606 | 321 | SPO_3606 "mandelate racemase/m | 0.545 | 0.694 | 0.351 | 2.6e-20 | |
| TIGR_CMR|SPO_1594 | 368 | SPO_1594 "mandelate racemase/m | 0.713 | 0.793 | 0.257 | 5.4e-19 | |
| UNIPROTKB|Q81K98 | 368 | BAS4746 "N-acylamino acid race | 0.699 | 0.777 | 0.262 | 4.5e-17 | |
| TIGR_CMR|BA_5107 | 368 | BA_5107 "N-acylamino acid race | 0.699 | 0.777 | 0.262 | 4.5e-17 | |
| UNIPROTKB|O34514 | 371 | menC "o-succinylbenzoate synth | 0.706 | 0.778 | 0.246 | 1.4e-16 |
| UNIPROTKB|Q81PF7 BAS2659 "Mandelate racemase/muconate lactonizing enzyme family protein" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
Identities = 117/339 (34%), Positives = 181/339 (53%)
Query: 58 VPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEV 117
V L PF A + ++E++ + I G VG G P +T D + +A +
Sbjct: 13 VNLHTPFKTALRTVTEIESIDVYIHTDEGIVGKGAGAATPVITG-DFANGIEEA-----I 66
Query: 118 LKESPAMALGSVFGVVAGLLPGHQFA-----SVRAAVEMALIDAVAKSVSMPLWRLFGGV 172
L + +G LL Q + S +AAV++AL D + ++PL+ L GG
Sbjct: 67 LGPMRSSLIGQDIIQFQQLLQHIQMSCIGNPSAKAAVDIALYDVYCQYHNIPLYALLGG- 125
Query: 173 SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSS 231
I TDIT+ + P A+ A ++ ++GF TLK+KVGK+ D+E + AIR +V +++
Sbjct: 126 KKEIHTDITLSVDEPFIMAKEAKQHVEKGFQTLKIKVGKSAHLDLERIEAIRNSVPKNTT 185
Query: 232 FILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 291
LDAN+G+ P+EAV +++++ + EQPVH DW+GL +V KD + A
Sbjct: 186 LRLDANQGWNPKEAVSIIKEMENRNLNIEFIEQPVHAKDWDGLKYV----KDHVQTPIMA 241
Query: 292 DESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLA 350
DES S D KIV+G D+INIKL K G+ A I ++ A+G+ M+G M+E+ L+
Sbjct: 242 DESIFSASDALKIVQGRYVDLINIKLMKCSGIREAWRIADIAEAAGVKCMVGSMMESSLS 301
Query: 351 MGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGA 389
+ HL+A + DLD PL L E+P +G SG+
Sbjct: 302 VSAVAHLAAAHPNIHYFDLDAPLWLMEEP--EGMTYSGS 338
|
|
| TIGR_CMR|BA_2850 BA_2850 "mandelate racemase/muconate lactonizing enzyme family protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
Identities = 117/339 (34%), Positives = 181/339 (53%)
Query: 58 VPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEV 117
V L PF A + ++E++ + I G VG G P +T D + +A +
Sbjct: 13 VNLHTPFKTALRTVTEIESIDVYIHTDEGIVGKGAGAATPVITG-DFANGIEEA-----I 66
Query: 118 LKESPAMALGSVFGVVAGLLPGHQFA-----SVRAAVEMALIDAVAKSVSMPLWRLFGGV 172
L + +G LL Q + S +AAV++AL D + ++PL+ L GG
Sbjct: 67 LGPMRSSLIGQDIIQFQQLLQHIQMSCIGNPSAKAAVDIALYDVYCQYHNIPLYALLGG- 125
Query: 173 SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSS 231
I TDIT+ + P A+ A ++ ++GF TLK+KVGK+ D+E + AIR +V +++
Sbjct: 126 KKEIHTDITLSVDEPFIMAKEAKQHVEKGFQTLKIKVGKSAHLDLERIEAIRNSVPKNTT 185
Query: 232 FILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 291
LDAN+G+ P+EAV +++++ + EQPVH DW+GL +V KD + A
Sbjct: 186 LRLDANQGWNPKEAVSIIKEMENRNLNIEFIEQPVHAKDWDGLKYV----KDHVQTPIMA 241
Query: 292 DESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLA 350
DES S D KIV+G D+INIKL K G+ A I ++ A+G+ M+G M+E+ L+
Sbjct: 242 DESIFSASDALKIVQGRYVDLINIKLMKCSGIREAWRIADIAEAAGVKCMVGSMMESSLS 301
Query: 351 MGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGA 389
+ HL+A + DLD PL L E+P +G SG+
Sbjct: 302 VSAVAHLAAAHPNIHYFDLDAPLWLMEEP--EGMTYSGS 338
|
|
| TIGR_CMR|BA_0339 BA_0339 "mandelate racemase/muconate lactonizing enzyme family protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 85/329 (25%), Positives = 169/329 (51%)
Query: 56 LNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA--MVKASE 113
+ +PL PF I+ + ++ +++E G +G+GE HVT E ++ ++K +
Sbjct: 11 IRLPLRDPFVISYGSYSDMPSIIVKMETDEGIIGYGEGVADDHVTGESWESTFHILKHTL 70
Query: 114 ACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG-V 172
A ++ ++P M + + ++ + G + +AA+++A D + K ++ P+++L GG
Sbjct: 71 APALIGQNP-MNIEKIHDMMDNTIYG--VPTAKAAIDIACFDIMGKKLNQPVYQLIGGRY 127
Query: 173 SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRA-VHPDSS 231
+ I P E AE A+ ++G+ + K+KVG N+KED++ + A+R V D +
Sbjct: 128 HEEFPITHVLSIADPEEMAEEAASMIQKGYQSFKMKVGTNVKEDVKRIEAVRERVGNDIA 187
Query: 232 FILDANEGYKPQEAVEVLEKLYEMGVTPV-LFEQPVHRDDWEGLGHVSHIAKDKFGVSVA 290
+D N+G+K + L L +G + EQPV DD + + H+ + K + +
Sbjct: 188 IRVDVNQGWK--NSANTLMALRSLGHLNIDWIEQPVIADDIDAMAHI----RSKTDLPLM 241
Query: 291 ADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRL 349
DE + ++++I+ + AD +NIKL K G + A+++ +G+ +G MVE+ +
Sbjct: 242 IDEGLKGSREMRQIINLDAADKVNIKLMKCGGIYPAVKLAHQAEMAGIECQVGSMVESSV 301
Query: 350 AMGFAGHLSAGLGCFKFIDLDTPLLLSED 378
A H++ ++L PL ++D
Sbjct: 302 ASSAGFHVAFSKKIITSVELTGPLKFTKD 330
|
|
| UNIPROTKB|Q71WQ8 LMOf2365_2493 "N-acylamino acid racemase" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] | Back alignment and assigned GO terms |
|---|
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 89/297 (29%), Positives = 151/297 (50%)
Query: 58 VPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPV--LPHVTAEDQQTAM-VKASEA 114
+PLIAPF + L+ + I + G G+GE LP T E TA+ +
Sbjct: 13 LPLIAPFKTSYGELNSKDFYIIELVNEEGIRGYGELEAFPLPDYTEETLGTAISIIKQHL 72
Query: 115 CEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSN 174
+L + V + + G++ A +AAVE+A+ DA AK+ + L ++ G +
Sbjct: 73 LPILAQKEIRTPEEV-NQMFSWIQGNEMA--KAAVELAVWDAFAKNEKLSLAKMIGAKKD 129
Query: 175 TITTDITIPIVSPAEA-AELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFI 233
+I ++I + AEA +L S+Y +G+ +KLK+ K+DI+ ++A+R P+ S +
Sbjct: 130 SIAVGVSIGVQHSAEALVQLVSQYMDEGYERVKLKIAP--KKDIQFVKAVREKFPNLSLM 187
Query: 234 LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI-AKDKFGVSVAAD 292
DAN Y ++ + +L++L + + EQP D+ V H + K + D
Sbjct: 188 ADANSAYNREDFL-LLKELDHFNLE--MIEQPFGTKDF-----VEHAWLQKKLKTRICLD 239
Query: 293 ESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVR-ASGLNLMI--GGMVE 346
E+ RSLDD+K+ +N+KLA+VG G E +++ R S NL++ GGM+E
Sbjct: 240 ENIRSLDDLKQAHMLGSCQAVNLKLARVG--GMSEALKIARYCSDNNLLVWCGGMLE 294
|
|
| UNIPROTKB|P51981 ycjG "L-Ala-D/L-Glu epimerase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 265 (98.3 bits), Expect = 6.8e-23, P = 6.8e-23
Identities = 97/322 (30%), Positives = 148/322 (45%)
Query: 59 PLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVL 118
PL PF IA + V + +E G G GE P D AS +++
Sbjct: 12 PLHTPFVIARGSRSEARVVVVELE-EEGIKGTGECTPYPRYGESD-------ASVMAQIM 63
Query: 119 KESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG-GVSNTIT 177
P + G + +LP + R A++ AL D A+ L L G + T+
Sbjct: 64 SVVPQLEKGLTREELQKILPA---GAARNALDCALWDLAARRQQQSLADLIGITLPETVI 120
Query: 178 TDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDAN 237
T T+ I +P + A AS + G LK+K+ +L + V AIR PD++ I+DAN
Sbjct: 121 TAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDNHLISERMV--AIRTAVPDATLIVDAN 178
Query: 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRS 297
E ++ + + L ++GV + EQP+ D L + H + + ADESC +
Sbjct: 179 ESWRAEGLAARCQLLADLGVA--MLEQPLPAQDDAALENFIH------PLPICADESCHT 230
Query: 298 LDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 356
++K + KG +++NIKL K G L AL + RA G +LM+G M+ T A+ A
Sbjct: 231 RSNLKAL-KGRY-EMVNIKLDKTGGLTEALALATEARAQGFSLMLGCMLCTSRAISAALP 288
Query: 357 LSAGLGCFKFIDLDTPLLLSED 378
L + F DLD P L+ D
Sbjct: 289 LVPQVS---FADLDGPTWLAVD 307
|
|
| TIGR_CMR|SPO_3606 SPO_3606 "mandelate racemase/muconate lactonizing enzyme family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 243 (90.6 bits), Expect = 2.6e-20, P = 2.6e-20
Identities = 86/245 (35%), Positives = 120/245 (48%)
Query: 136 LLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG-GVSNTITTDITIPIVSPAEAAELA 194
LLP + R AV+ AL D +K W L G T T+ + +P A
Sbjct: 76 LLPA---GAARNAVDCALWDLESKRAGKRAWDLAGLPAPGPEITAYTLSLDTPDAMQAQA 132
Query: 195 SKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE 254
+K + LK+K+G +D+ L A+RA PD+ I+DANEG+ + ++ L
Sbjct: 133 AKNAHRPL--LKIKLGT--PDDMPRLEAVRAGAPDAKIIIDANEGWSAEVYADLAPHLVR 188
Query: 255 MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 314
+GV L EQP+ E L I ++ V V ADESC + + KG DV+N
Sbjct: 189 LGVA--LVEQPLPAGQDEAL-----IGMER-PVPVCADESCHDRASLAAL-KGKY-DVVN 238
Query: 315 IKLAKVGVLG-ALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPL 373
IKL K G L ALE+ A G ++M+G MV + LAM A ++ G DLD PL
Sbjct: 239 IKLDKTGGLTEALELRRAALAEGYDIMVGCMVGSSLAMAPATLVAQGA---LVTDLDGPL 295
Query: 374 LLSED 378
LL+ED
Sbjct: 296 LLAED 300
|
|
| TIGR_CMR|SPO_1594 SPO_1594 "mandelate racemase/muconate lactonizing enzyme, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 245 (91.3 bits), Expect = 5.4e-19, P = 5.4e-19
Identities = 80/311 (25%), Positives = 145/311 (46%)
Query: 56 LNVPLIAPFTIATSRL--DQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
+++PL P+ ++ RL + ++ +++E G GWGE H + E
Sbjct: 11 VDLPLEHPYWLSGGRLKFELLDATLVKLETDAGITGWGEGTPWGHTYVPAHGPGIRAGIE 70
Query: 114 ACE--VLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171
VL P L V + LPGH +A ++ ++MA D ++ +P+ L GG
Sbjct: 71 TMAPFVLGLDPRRLL-DVERAMDIALPGHLYA--KSPIDMACWDIAGQAAGLPIADLMGG 127
Query: 172 VSNTITTDIT-IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDS 230
S T + + S E + +YR++G+ +K+G +++ DI +R + +
Sbjct: 128 GSRTPRPIASSVGAKSVEETRAVIDRYRQRGYVAHSVKIGGDVERDIARIRDVEDIRKPG 187
Query: 231 SFIL-DANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSV 289
+L D N G+ Q+A+ V+ ++ V +FEQP E L ++ I + V
Sbjct: 188 EIVLYDVNRGWTRQQALRVMRATEDLHV---MFEQP-----GETLDDIAAI-RPLHSAPV 238
Query: 290 AADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNLMIGGMVETR 348
+ DE +L D ++ + LA+V IKL +VG L A + ++ A G+++ + +
Sbjct: 239 SVDECLVTLQDAARVARDGLAEVFGIKLNRVGGLTRAARMRDIALAHGIDMFVMATGGSV 298
Query: 349 LAMGFAGHLSA 359
LA A HL+A
Sbjct: 299 LADAEALHLAA 309
|
|
| UNIPROTKB|Q81K98 BAS4746 "N-acylamino acid racemase" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 230 (86.0 bits), Expect = 4.5e-17, P = 4.5e-17
Identities = 81/308 (26%), Positives = 145/308 (47%)
Query: 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAED 103
+++++A +PL+ PF + ++ E++ I +E +G +G+GE P T E
Sbjct: 1 MEIKKATLHITEMPLVIPFAASYGTYEKRESIVIELEDEDGYIGFGEVVAFSEPWYTEET 60
Query: 104 QQTAMVKASEAC--EVLKE--SPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAK 159
+TA+ + ++LK S + S+F + ++ A +A +E A+ D AK
Sbjct: 61 VKTALHVLQDFLLPDLLKAEISHPNEVPSLFQHIKR----NRMA--KAGIEGAVWDLYAK 114
Query: 160 SVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEV 219
L L GG + I + I I + + KY ++G+ K+K+ D E+
Sbjct: 115 RQKKSLATLLGGTKSEIEVGVVIGINTIPVMLKQIEKYAEEGYERFKVKIKPG--HDYEL 172
Query: 220 LRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 279
L+ IR P + DAN Y + E L++L E + ++ EQP+ D++ L H +
Sbjct: 173 LKEIRKEFPHIPLMADANSAYTLADT-ESLKRLDEFQL--MMIEQPLA--DYDFLDH-AQ 226
Query: 280 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLN 338
+ K K + DES SL+D + + ++NIK +VG L +++I +
Sbjct: 227 LQK-KIETPICLDESIHSLEDARVAITLGSCQIVNIKPGRVGGLTESIQIHNYCMEHNIP 285
Query: 339 LMIGGMVE 346
+ GGMVE
Sbjct: 286 VWCGGMVE 293
|
|
| TIGR_CMR|BA_5107 BA_5107 "N-acylamino acid racemase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 230 (86.0 bits), Expect = 4.5e-17, P = 4.5e-17
Identities = 81/308 (26%), Positives = 145/308 (47%)
Query: 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAED 103
+++++A +PL+ PF + ++ E++ I +E +G +G+GE P T E
Sbjct: 1 MEIKKATLHITEMPLVIPFAASYGTYEKRESIVIELEDEDGYIGFGEVVAFSEPWYTEET 60
Query: 104 QQTAMVKASEAC--EVLKE--SPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAK 159
+TA+ + ++LK S + S+F + ++ A +A +E A+ D AK
Sbjct: 61 VKTALHVLQDFLLPDLLKAEISHPNEVPSLFQHIKR----NRMA--KAGIEGAVWDLYAK 114
Query: 160 SVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEV 219
L L GG + I + I I + + KY ++G+ K+K+ D E+
Sbjct: 115 RQKKSLATLLGGTKSEIEVGVVIGINTIPVMLKQIEKYAEEGYERFKVKIKPG--HDYEL 172
Query: 220 LRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 279
L+ IR P + DAN Y + E L++L E + ++ EQP+ D++ L H +
Sbjct: 173 LKEIRKEFPHIPLMADANSAYTLADT-ESLKRLDEFQL--MMIEQPLA--DYDFLDH-AQ 226
Query: 280 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLN 338
+ K K + DES SL+D + + ++NIK +VG L +++I +
Sbjct: 227 LQK-KIETPICLDESIHSLEDARVAITLGSCQIVNIKPGRVGGLTESIQIHNYCMEHNIP 285
Query: 339 LMIGGMVE 346
+ GGMVE
Sbjct: 286 VWCGGMVE 293
|
|
| UNIPROTKB|O34514 menC "o-succinylbenzoate synthase" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)] | Back alignment and assigned GO terms |
|---|
Score = 226 (84.6 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 77/313 (24%), Positives = 154/313 (49%)
Query: 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAED 103
+++++ L++ L PF + L + + + + ++G GWGE P T E
Sbjct: 2 IEIEKITLYHLSMNLKKPFKNSIETLQERKFLIVEAIDTSGVTGWGEVSAFSSPWYTEET 61
Query: 104 QQTA--MVKASEACEVL-KE--SPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVA 158
T M+K V+ +E P+ S+ G++ A +A +E A+ D A
Sbjct: 62 IGTCLHMLKDFFIPNVVGREFNHPSEVPDSL-----ARYKGNRMA--KAGLESAVWDIYA 114
Query: 159 KSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIE 218
K + L GG + + + + + + + Y+K+G+ +K+K+ +D+E
Sbjct: 115 KKKGVSLAEALGGTRDKVPAGVVVGLAPLDDMLKEIESYQKEGYQRIKIKIQPG--QDVE 172
Query: 219 VLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 278
+++AIR+ P + DAN Y+ ++ + L++L + + ++ EQP+ DD + H
Sbjct: 173 LVKAIRSRFPTIPLMADANSSYELKD-ISRLKELDDYHL--MMIEQPLQADDI--VDH-R 226
Query: 279 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGL 337
H+ K ++ DES S+DD ++ ++ +INIK ++VG L AL+I ++ + +
Sbjct: 227 HLQKH-LKTAICLDESICSVDDARRAIELGSCKIINIKPSRVGGLTEALKIHDLCKEHHM 285
Query: 338 NLMIGGMVETRLA 350
+ GGM+ET ++
Sbjct: 286 QVWCGGMLETGIS 298
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O34508 | AEEP_BACSU | 5, ., 1, ., 1, ., n, 1 | 0.3694 | 0.8312 | 0.9289 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 4.2.1 | LOW CONFIDENCE prediction! |
| 3rd Layer | 5.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 409 | |||
| cd03319 | 316 | cd03319, L-Ala-DL-Glu_epimerase, L-Ala-D/L-Glu epi | 1e-119 | |
| COG4948 | 372 | COG4948, COG4948, L-alanine-DL-glutamate epimerase | 2e-61 | |
| cd03315 | 265 | cd03315, MLE_like, Muconate lactonizing enzyme (ML | 8e-53 | |
| cd03317 | 354 | cd03317, NAAAR, N-acylamino acid racemase (NAAAR), | 2e-43 | |
| cd03318 | 365 | cd03318, MLE, Muconate Lactonizing Enzyme (MLE), a | 1e-39 | |
| TIGR02534 | 368 | TIGR02534, mucon_cyclo, muconate and chloromuconat | 2e-35 | |
| TIGR01928 | 324 | TIGR01928, menC_lowGC/arch, o-succinylbenzoate syn | 1e-29 | |
| cd03316 | 357 | cd03316, MR_like, Mandelate racemase (MR)-like sub | 9e-29 | |
| PRK15129 | 321 | PRK15129, PRK15129, L-Ala-D/L-Glu epimerase; Provi | 2e-25 | |
| cd00308 | 229 | cd00308, enolase_like, Enolase-superfamily, charac | 2e-25 | |
| cd03320 | 263 | cd03320, OSBS, o-Succinylbenzoate synthase (OSBS) | 8e-24 | |
| smart00922 | 97 | smart00922, MR_MLE, Mandelate racemase / muconate | 3e-21 | |
| cd03321 | 355 | cd03321, mandelate_racemase, Mandelate racemase (M | 3e-16 | |
| cd03328 | 352 | cd03328, MR_like_3, Mandelate racemase (MR)-like s | 3e-15 | |
| PRK02901 | 327 | PRK02901, PRK02901, O-succinylbenzoate synthase; P | 5e-15 | |
| cd03324 | 415 | cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS | 9e-14 | |
| TIGR01927 | 307 | TIGR01927, menC_gamma/gm+, o-succinylbenzoate synt | 2e-13 | |
| PLN02980 | 1655 | PLN02980, PLN02980, 2-oxoglutarate decarboxylase/ | 4e-13 | |
| pfam13378 | 111 | pfam13378, MR_MLE_C, Enolase C-terminal domain-lik | 1e-12 | |
| pfam01188 | 69 | pfam01188, MR_MLE, Mandelate racemase / muconate l | 2e-12 | |
| cd03327 | 341 | cd03327, MR_like_2, Mandelate racemase (MR)-like s | 2e-10 | |
| cd03329 | 368 | cd03329, MR_like_4, Mandelate racemase (MR)-like s | 1e-09 | |
| cd03325 | 352 | cd03325, D-galactonate_dehydratase, D-galactonate | 1e-08 | |
| PRK02714 | 320 | PRK02714, PRK02714, O-succinylbenzoate synthase; P | 6e-07 | |
| COG0148 | 423 | COG0148, Eno, Enolase [Carbohydrate transport and | 1e-05 | |
| pfam02746 | 117 | pfam02746, MR_MLE_N, Mandelate racemase / muconate | 4e-05 | |
| cd03322 | 361 | cd03322, rpsA, The starvation sensing protein RpsA | 3e-04 | |
| PRK14017 | 382 | PRK14017, PRK14017, galactonate dehydratase; Provi | 3e-04 | |
| cd03326 | 385 | cd03326, MR_like_1, Mandelate racemase (MR)-like s | 0.001 | |
| cd03323 | 395 | cd03323, D-glucarate_dehydratase, D-Glucarate dehy | 0.003 |
| >gnl|CDD|239435 cd03319, L-Ala-DL-Glu_epimerase, L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
Score = 348 bits (896), Expect = e-119
Identities = 135/328 (41%), Positives = 190/328 (57%), Gaps = 14/328 (4%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
+ RP +PL PFTIA + ENV + IEL G G+GEA P VT E ++ +
Sbjct: 1 KISLRPERLPLKRPFTIARGSRTEAENVIVEIELD-GITGYGEAAPTPRVTGETVESVLA 59
Query: 110 KASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLF 169
L L + + LLPG + RAAV++AL D AK + +PL++L+
Sbjct: 60 ALKSVRPALIGGDPR-LEKLLEALQELLPG--NGAARAAVDIALWDLEAKLLGLPLYQLW 116
Query: 170 GGVS-NTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP 228
GG + + TD TI I +P A A K K+GF LK+K+G +L++DIE +RAIR P
Sbjct: 117 GGGAPRPLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKLGGDLEDDIERIRAIREAAP 176
Query: 229 DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288
D+ +DAN+G+ P+EAVE+L +L E+GV L EQPV D +GL ++ +DK +
Sbjct: 177 DARLRVDANQGWTPEEAVELLRELAELGVE--LIEQPVPAGDDDGLAYL----RDKSPLP 230
Query: 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVET 347
+ ADESC S D ++ G D INIKL K G+ AL I ++ RA+GL +M+G MVE+
Sbjct: 231 IMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMVES 290
Query: 348 RLAMGFAGHLSAGLGCFKFIDLDTPLLL 375
L++ A HL+A F+DLD PLLL
Sbjct: 291 SLSIAAAAHLAA--AKADFVDLDGPLLL 316
|
The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 316 |
| >gnl|CDD|227284 COG4948, COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only] | Back alignment and domain information |
|---|
Score = 202 bits (516), Expect = 2e-61
Identities = 100/363 (27%), Positives = 161/363 (44%), Gaps = 32/363 (8%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHV--TAEDQQTAM--- 108
P+ VPL PF + + V + I +G VGWGEA E + +
Sbjct: 9 IPVAVPLSPPFVTSGGTVRFFTRVIVEITTDDGIVGWGEAVPGGRARYGEEAEAVLLAPL 68
Query: 109 VKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRL 168
+ + ++ + + G + +AV++AL D K++ +P+++L
Sbjct: 69 LIGRDPFDIERIWQKLYRAGFAR------RGGITMAAISAVDIALWDLAGKALGVPVYKL 122
Query: 169 FGGVSNTITTDITIPI---VSPAEAAELASKYRKQGFTTLKLKVGKN-LKEDIEVLRAIR 224
GG AAE A + GF LKLKVG ED+E +RA+R
Sbjct: 123 LGGKVRDEVRAYASGGGGEDPEEMAAEAARALVELGFKALKLKVGVGDGDEDLERVRALR 182
Query: 225 -AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
AV D ++DAN G+ +EA+ + L E G+ E+P+ DD EGL +
Sbjct: 183 EAVGDDVRLMVDANGGWTLEEAIRLARALEEYGLE--WIEEPLPPDDLEGLRELRA---- 236
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIG 342
+AA ES + D +++++ D++ LA+V G+ AL+I A G +M+G
Sbjct: 237 ATSTPIAAGESVYTRWDFRRLLEAGAVDIVQPDLARVGGITEALKIAA--LAEGFGVMVG 294
Query: 343 GMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDP-----VLDGYEVSGAVYKFTNAR 397
VE +++ A HL+A L F DL+ PL L++D V + V G + +
Sbjct: 295 PHVEGPISLAAALHLAAALP--NFGDLEGPLALADDDWYDDLVEEPLIVRGGLVHVPDGP 352
Query: 398 GHG 400
G G
Sbjct: 353 GLG 355
|
Length = 372 |
| >gnl|CDD|239431 cd03315, MLE_like, Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
Score = 176 bits (449), Expect = 8e-53
Identities = 92/319 (28%), Positives = 141/319 (44%), Gaps = 59/319 (18%)
Query: 51 AENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVK 110
E P+ +PL P A+ L ++V +R+ +G VGW EA
Sbjct: 1 VEAIPVRLPLKRPLKWASGTLTTADHVLLRLHTDDGLVGWAEAT---------------- 44
Query: 111 ASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG 170
+AAV+MAL D K + +P++ L G
Sbjct: 45 -----------------------------------KAAVDMALWDLWGKRLGVPVYLLLG 69
Query: 171 GVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPD 229
G + + + + PAE AE A + + GF T KLKVG++ D+ V+ A+R AV D
Sbjct: 70 GYRDRVRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVGRDPARDVAVVAALREAVGDD 129
Query: 230 SSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSV 289
+ +DAN G+ P++A+ L L ++G+ EQP+ DD EG ++ +
Sbjct: 130 AELRVDANRGWTPKQAIRALRALEDLGLD--YVEQPLPADDLEGRAALA----RATDTPI 183
Query: 290 AADESCRSLDDVKKIVKGNLADVINIKLAKVGVL-GALEIIEVVRASGLNLMIGGMVETR 348
ADES + D + + AD +NIK AK G L A ++ V A GL +M+G M+E+
Sbjct: 184 MADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIESG 243
Query: 349 LAMGFAGHLSAGLGCFKFI 367
L HL+A L
Sbjct: 244 LGTLANAHLAAALRAVTLP 262
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions. Length = 265 |
| >gnl|CDD|239433 cd03317, NAAAR, N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids | Back alignment and domain information |
|---|
Score = 154 bits (392), Expect = 2e-43
Identities = 87/308 (28%), Positives = 148/308 (48%), Gaps = 29/308 (9%)
Query: 51 AENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPV--LPHVTAEDQQTAM 108
E + +PL PF + L++ E + + + G G+GE P T E TA
Sbjct: 1 IELFHVRMPLKFPFETSFGTLNEREFLIVELTDEEGITGYGEVVAFEGPFYTEETNATAW 60
Query: 109 VKASEACEVLKESPA-MALGSVFG---VVAGLL---PGHQFASVRAAVEMALIDAVAKSV 161
+LK+ + LG F V+ L G+ A +A +EMA+ D AK+
Sbjct: 61 -------HILKDYLLPLLLGREFSHPEEVSERLAPIKGNNMA--KAGLEMAVWDLYAKAQ 111
Query: 162 SMPLWRLFGGVSNTITTDITIPIVSPAEA-AELASKYRKQGFTTLKLKVGKNLKEDIEVL 220
L + GG ++I ++I I E + +Y ++G+ +KLK+ D+E L
Sbjct: 112 GQSLAQYLGGTRDSIPVGVSIGIQDDVEQLLKQIERYLEEGYKRIKLKIKPGW--DVEPL 169
Query: 221 RAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 280
+A+R PD + DAN Y + +L++L E G+ ++ EQP+ DD + H + +
Sbjct: 170 KAVRERFPDIPLMADANSAYTLADI-PLLKRLDEYGL--LMIEQPLAADDL--IDH-AEL 223
Query: 281 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNL 339
K + DES +S +D +K ++ +INIK +VG L AL+I ++ + G+ +
Sbjct: 224 QK-LLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEHGIPV 282
Query: 340 MIGGMVET 347
GGM+E+
Sbjct: 283 WCGGMLES 290
|
NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 354 |
| >gnl|CDD|239434 cd03318, MLE, Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 1e-39
Identities = 99/339 (29%), Positives = 163/339 (48%), Gaps = 27/339 (7%)
Query: 56 LNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA--PVLPHVTAEDQQT--AMVKA 111
+++P P A + + V +R+ S+G VG GEA P P E +T A++
Sbjct: 10 VDLPTRRPHQFAGTTMHTQSLVLVRLTTSDGVVGIGEATTPGGPAWGGESPETIKAIIDR 69
Query: 112 SEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171
A +L A +G+ ++ + G+ FA +AA+EMAL+DA + + +P+ L GG
Sbjct: 70 YLA-PLLIGRDATNIGAAMALLDRAVAGNLFA--KAAIEMALLDAQGRRLGLPVSELLGG 126
Query: 172 VSNTITTDITIPIVSP------AEAAELASKYRKQGFTTLKLKVGKN-LKEDIEVLRAIR 224
+ + + S AEA E+ R + F KLK+G +D+ + AI
Sbjct: 127 RVRD-SLPVAWTLASGDTERDIAEAEEMLEAGRHRRF---KLKMGARPPADDLAHVEAIA 182
Query: 225 AVHPDS-SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
D S +D N+ + A+ L +L GV L EQPV R++ +GL +
Sbjct: 183 KALGDRASVRVDVNQAWDESTAIRALPRLEAAGVE--LIEQPVPRENLDGLARLR----S 236
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIG 342
+ V + ADES D ++ + ADV ++K+AK G+ A ++ + A+G+ L G
Sbjct: 237 RNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGG 296
Query: 343 GMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPV 380
M+E+ + + HL A L F +L PLLL+ED +
Sbjct: 297 TMLESSIGTAASAHLFATLPSLPFGCELFGPLLLAEDLL 335
|
This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. Length = 365 |
| >gnl|CDD|162905 TIGR02534, mucon_cyclo, muconate and chloromuconate cycloisomerases | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 2e-35
Identities = 100/375 (26%), Positives = 173/375 (46%), Gaps = 25/375 (6%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+Q E ++VP I P +AT+ + + V +RI +G +G+GE + + +
Sbjct: 1 IQSVETILVDVPTIRPHKLATTTMTEQTLVLVRIRTEDGVIGYGEGTTIGGLWWGGESPE 60
Query: 108 MVKA---SEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMP 164
+KA + VL A + ++ + ++ G++FA +AAV+ AL DA A+ + +P
Sbjct: 61 TIKANIDTYLAPVLVGRDATEIAAIMADLEKVVAGNRFA--KAAVDTALHDAQARRLGVP 118
Query: 165 LWRLFGGVSNTITTDITIPIVSP------AEAAELASKYRKQGFTTLKLKVGKN-LKEDI 217
+ L GG + D+T + S AEA E + R + F KLK+G +D+
Sbjct: 119 VSELLGGRVRD-SVDVTWTLASGDTDRDIAEAEERIEEKRHRSF---KLKIGARDPADDV 174
Query: 218 EVLRAI-RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGH 276
+ AI +A+ +S +D N + + A+ L +L + GV L EQP ++ E L
Sbjct: 175 AHVVAIAKALGDRASVRVDVNAAWDERTALHYLPQLADAGVE--LIEQPTPAENREALAR 232
Query: 277 VSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRAS 335
++ +F V + ADES D I K + ADV +K K G+L + +I + A+
Sbjct: 233 LT----RRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAA 288
Query: 336 GLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFT 394
G+ L G M+E + + H A F +L PLLL ++ + + +
Sbjct: 289 GIALYGGTMLEGPIGTIASAHFFATFPALSFGTELFGPLLLKDEILTEPLQYEDFQLHLP 348
Query: 395 NARGHGGFLHWDNIA 409
G G + D +
Sbjct: 349 QGPGLGVEVDEDKVN 363
|
This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2). Length = 368 |
| >gnl|CDD|213667 TIGR01928, menC_lowGC/arch, o-succinylbenzoate synthase | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 1e-29
Identities = 76/311 (24%), Positives = 131/311 (42%), Gaps = 23/311 (7%)
Query: 56 LNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGE--APVLPHVTAEDQQTAM--VKA 111
++ P +PF + L+ + + I + G G+GE A P T E T ++
Sbjct: 3 VSEPFKSPFKTSKGTLNHRDCLIIELIDDKGNAGFGEVVAFQTPWYTHETIATVKHIIED 62
Query: 112 SEACEVLKE--SPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLF 169
+ KE P+ AL V L G A +A +EMAL D K S L
Sbjct: 63 FFEPNINKEFEHPSEALELVRS-----LKGTPMA--KAGLEMALWDMYHKLPSFSLAYGQ 115
Query: 170 GGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPD 229
G + + + + + + + G+ +KLK+ + ++++ R P
Sbjct: 116 GKLRDKAPAGAVSGLANDEQMLKQIESLKATGYKRIKLKITPQI--MHQLVKLRRLRFPQ 173
Query: 230 SSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSV 289
++DANE Y Q+ L++L + + E+P DD L + +
Sbjct: 174 IPLVIDANESYDLQD-FPRLKELDRYQL--LYIEEPFKIDDISMLDEL----AKGTITPI 226
Query: 290 AADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNLMIGGMVETR 348
DES SLDD + +++ VINIK ++G L + I+ + G + IGGM+ET
Sbjct: 227 CLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIDTCKEHGAKVWIGGMLETG 286
Query: 349 LAMGFAGHLSA 359
++ F L++
Sbjct: 287 ISRAFNVALAS 297
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 324 |
| >gnl|CDD|239432 cd03316, MR_like, Mandelate racemase (MR)-like subfamily of the enolase superfamily | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 9e-29
Identities = 91/363 (25%), Positives = 155/363 (42%), Gaps = 37/363 (10%)
Query: 59 PLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVL 118
L P + V +R+ +G GWGEA A ++ A ++
Sbjct: 9 VLRVPLPEPGGAVTWRNLVLVRVTTDDGITGWGEAYP---GGRPSAVAAAIEDLLAPLLI 65
Query: 119 KESPAMALGSVFGVV--AGLLPGHQFASVRA--AVEMALIDAVAKSVSMPLWRLFGGVS- 173
P + ++ + G ++ A AV++AL D K+ +P+++L GG
Sbjct: 66 GRDPL-DIERLWEKLYRRLFWRGRGGVAMAAISAVDIALWDIKGKAAGVPVYKLLGGKVR 124
Query: 174 -------NTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG------KNLKEDIEVL 220
+ D + P E AE A + +GFT +KLKVG ++L+ED+ +
Sbjct: 125 DRVRVYASGGGYDDS-----PEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARV 179
Query: 221 RAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 279
RA+R AV PD ++DAN + EA+ + L E FE+PV DD EGL +
Sbjct: 180 RAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYD--LFWFEEPVPPDDLEGLARL-- 235
Query: 280 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLN 338
+ V +AA E+ + + + +++ D+I + KV G+ A +I + A G+
Sbjct: 236 --RQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHGVR 293
Query: 339 LMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLL-LSEDPVLDGYEVSGAVYKFTNAR 397
+ G + + + HL+A L F ++ L L ED + E+ +
Sbjct: 294 VAPHGA-GGPIGLAASLHLAAALPNFGILEYHLDDLPLREDLFKNPPEIEDGYVTVPDRP 352
Query: 398 GHG 400
G G
Sbjct: 353 GLG 355
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD). Length = 357 |
| >gnl|CDD|185083 PRK15129, PRK15129, L-Ala-D/L-Glu epimerase; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-25
Identities = 100/322 (31%), Positives = 149/322 (46%), Gaps = 28/322 (8%)
Query: 59 PLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVL 118
PL PF IA + V + +E G G GE P D AS +++
Sbjct: 12 PLHTPFVIARGSRSEARVVVVELE-EEGIKGTGECTPYPRYGESD-------ASVMAQIM 63
Query: 119 KESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSN-TIT 177
P + G + LLP + R AV+ AL D A+ L +L G T+T
Sbjct: 64 SVVPQLEKGLTREALQKLLPA---GAARNAVDCALWDLAARQQQQSLAQLIGITLPETVT 120
Query: 178 TDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDAN 237
T T+ I +P + A AS + G LK+K+ +L E + AIR+ PD++ I+DAN
Sbjct: 121 TAQTVVIGTPEQMANSASALWQAGAKLLKVKLDNHLIS--ERMVAIRSAVPDATLIVDAN 178
Query: 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRS 297
E ++ + + L ++GV + EQP+ D L + H + + ADESC +
Sbjct: 179 ESWRAEGLAARCQLLADLGV--AMLEQPLPAQDDAALENFIH------PLPICADESCHT 230
Query: 298 LDDVKKIVKGNLADVINIKLAKVGVL-GALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 356
+K + KG +++NIKL K G L AL + RA G LM+G M+ T A+ A
Sbjct: 231 RSSLKAL-KGRY-EMVNIKLDKTGGLTEALALATEARAQGFALMLGCMLCTSRAISAALP 288
Query: 357 LSAGLGCFKFIDLDTPLLLSED 378
L + +F DLD P L+ D
Sbjct: 289 LVPQV---RFADLDGPTWLAVD 307
|
Length = 321 |
| >gnl|CDD|238188 cd00308, enolase_like, Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 2e-25
Identities = 71/321 (22%), Positives = 122/321 (38%), Gaps = 94/321 (29%)
Query: 51 AENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVK 110
E + +P PF +A D + V +++ +G VGWGE
Sbjct: 1 VEVYAVRLPTSRPFYLAGGTADTNDTVLVKLTTDSGVVGWGE------------------ 42
Query: 111 ASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG 170
V + ++MAL D AK++ +PL L G
Sbjct: 43 ----------------------------------VISGIDMALWDLAAKALGVPLAELLG 68
Query: 171 GVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPD 229
G + IE +RA+R A PD
Sbjct: 69 G--------------GSRDRVPAYGS--------------------IERVRAVREAFGPD 94
Query: 230 SSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSV 289
+ +DAN + P+EA+ ++ L + G E+P DD EG + + G+ +
Sbjct: 95 ARLAVDANGAWTPKEAIRLIRALEKYG--LAWIEEPCAPDDLEGYAALR----RRTGIPI 148
Query: 290 AADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETR 348
AADES ++DD + ++ D++ IK +VG + + ++ A G+ +M+ G +E+
Sbjct: 149 AADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLESS 208
Query: 349 LAMGFAGHLSAGLGCFKFIDL 369
+ A HL+A L + I+
Sbjct: 209 IGTAAALHLAAALPNDRAIET 229
|
Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase. Length = 229 |
| >gnl|CDD|239436 cd03320, OSBS, o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 8e-24
Identities = 83/312 (26%), Positives = 123/312 (39%), Gaps = 65/312 (20%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
P ++PL P + RL + + +R+E G VGWGE LP
Sbjct: 4 YPYSLPLSRPLGTSRGRLTRRRGLLLRLEDLTGPVGWGEIAPLP---------------- 47
Query: 114 ACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVS 173
+ +E AL + A V R
Sbjct: 48 -------------------------------LAFGIESALANLEALLVGFTRPR------ 70
Query: 174 NTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDS-S 231
N I + +P A E + Y G+ T+KLKVG + +ED+ LRA+R P
Sbjct: 71 NRIPVNALLPAGDAAALGEAKAAY-GGGYRTVKLKVGATSFEEDLARLRALREALPADAK 129
Query: 232 FILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 291
LDAN G+ +EA+ LE L + + EQP+ DD L + GV +A
Sbjct: 130 LRLDANGGWSLEEALAFLEALAAGRIEYI--EQPLPPDDLAEL------RRLAAGVPIAL 181
Query: 292 DESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLA 350
DES R LDD + + +K A +G LE+ E RA G+ ++ +E+ +
Sbjct: 182 DESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARGIPAVVSSALESSIG 241
Query: 351 MGFAGHLSAGLG 362
+G HL+A L
Sbjct: 242 LGALAHLAAALP 253
|
Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 263 |
| >gnl|CDD|214914 smart00922, MR_MLE, Mandelate racemase / muconate lactonizing enzyme, C-terminal domain | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 3e-21
Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 187 PAEAAELASKY-RKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQE 244
P E AE A + + GF +K+KVG ED+ + A+R AV PD+ ++DAN + +E
Sbjct: 1 PEELAEAARRAVAEAGFRAVKVKVGGGPLEDLARVAAVREAVGPDADLMVDANGAWTAEE 60
Query: 245 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 279
A+ LE L E+G+ E+PV DD EGL +
Sbjct: 61 AIRALEALDELGLE--WIEEPVPPDDLEGLAELRR 93
|
Mandelate racemase (MR) and muconate lactonizing enzyme (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyze mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures.. This entry represents the C-terminal region of these proteins. Length = 97 |
| >gnl|CDD|239437 cd03321, mandelate_racemase, Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 3e-16
Identities = 60/238 (25%), Positives = 99/238 (41%), Gaps = 20/238 (8%)
Query: 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVG------WGEAPVLPHV 99
V + R +NVP+ P + + V I + G G + A +
Sbjct: 1 VLITGLRARAVNVPMQYPVHTSVGTVATAPLVLIDLATDEGVTGHSYLFTYTPAALKSLK 60
Query: 100 TAEDQQTAMVKASEACEVLKESPAMALGSVFGVV--AGLLPGHQFASVRAAVEMALIDAV 157
D A++ E AL F ++ GL+ A ++MA DA+
Sbjct: 61 QLLDDMAALLVGEPLAPAELER---ALAKRFRLLGYTGLV-----RMAAAGIDMAAWDAL 112
Query: 158 AKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKED 216
AK +PL +L GG + + + A E A ++GF +K K+G ED
Sbjct: 113 AKVHGLPLAKLLGGNPRPVQAYDSHGLDGAKLATERAVTAAEEGFHAVKTKIGYPTADED 172
Query: 217 IEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEG 273
+ V+R+IR AV ++D N+ EA+E + L + G+T + E+P + D+EG
Sbjct: 173 LAVVRSIRQAVGDGVGLMVDYNQSLTVPEAIERGQALDQEGLTWI--EEPTLQHDYEG 228
|
MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 355 |
| >gnl|CDD|239444 cd03328, MR_like_3, Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3 | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 3e-15
Identities = 55/203 (27%), Positives = 100/203 (49%), Gaps = 20/203 (9%)
Query: 147 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIV--------SPAEAAELASKYR 198
+AV++AL D A+ + +PL RL G +++ P+ E S +
Sbjct: 97 SAVDIALWDLKARLLGLPLARLLGRAHDSV------PVYGSGGFTSYDDDRLREQLSGWV 150
Query: 199 KQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGV 257
QG +K+K+G++ + D + + A R A+ PD+ +DAN Y ++A+ + + GV
Sbjct: 151 AQGIPRVKMKIGRDPRRDPDRVAAARRAIGPDAELFVDANGAYSRKQALALARAFADEGV 210
Query: 258 TPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKL 317
T FE+PV DD GL V + G+ +AA E +L +++++ + DV+ +
Sbjct: 211 T--WFEEPVSSDDLAGLRLVR--ERGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADV 266
Query: 318 AKV-GVLGALEIIEVVRASGLNL 339
+ GV G L+ + A ++L
Sbjct: 267 TRCGGVTGFLQAAALAAAHHVDL 289
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. Length = 352 |
| >gnl|CDD|235084 PRK02901, PRK02901, O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 5e-15
Identities = 63/221 (28%), Positives = 103/221 (46%), Gaps = 35/221 (15%)
Query: 181 TIPIVSPAEAAELASKYRKQGFTTLKLKV---GKNLKEDIEVLRAIR-AVHPDSSFILDA 236
T+P V A+ E+ +++ G T K+KV G+ L +D+ + A+R A+ PD +DA
Sbjct: 84 TVPAVDAAQVPEVLARF--PGCRTAKVKVAEPGQTLADDVARVNAVRDALGPDGRVRVDA 141
Query: 237 NEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA--KDKFGVSVAADES 294
N G+ EAV L G + EQP V +A + + GV +AADES
Sbjct: 142 NGGWSVDEAVAAARALDADGPLEYV-EQPC--------ATVEELAELRRRVGVPIAADES 192
Query: 295 CRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFA 354
R +D ++ + ADV +K+A +G G +++ GL +++ ++T + +
Sbjct: 193 IRRAEDPLRVARAGAADVAVLKVAPLG--GVRAALDIAEQIGLPVVVSSALDTSVGIAAG 250
Query: 355 GHLSA---------GLGCFKFI--DLDTPLLLSEDPVLDGY 384
L+A GL D+ PLL PV DG+
Sbjct: 251 LALAAALPELDHACGLATGGLFEEDVADPLL----PV-DGF 286
|
Length = 327 |
| >gnl|CDD|239440 cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 9e-14
Identities = 62/234 (26%), Positives = 99/234 (42%), Gaps = 55/234 (23%)
Query: 146 RAAVEMALIDAVAKSVSMPLWRL--------------FGGVSNTITTDITIPIVSPAEA- 190
AAV A+ D AK+ PLW+L F +++ +T + + I+ +
Sbjct: 111 TAAVVNAVWDLWAKAEGKPLWKLLVDMTPEELVSCIDFRYITDALTPEEALEILRRGQPG 170
Query: 191 ------------------------------AELASKYRKQGFTTLKLKVGKNLKEDIEVL 220
L + QGFT KLKVG +L++DI
Sbjct: 171 KAAREADLLAEGYPAYTTSAGWLGYSDEKLRRLCKEALAQGFTHFKLKVGADLEDDIRRC 230
Query: 221 RAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 279
R R V PD+ ++DAN+ + EA+E +++L E P E+P DD LGH +
Sbjct: 231 RLAREVIGPDNKLMIDANQRWDVPEAIEWVKQLAEFK--PWWIEEPTSPDDI--LGHAA- 285
Query: 280 IAKD--KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEV 331
I K + VA E C++ K++++ DV+ I ++G G E + V
Sbjct: 286 IRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQIDSCRLG--GVNENLAV 337
|
rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 415 |
| >gnl|CDD|233641 TIGR01927, menC_gamma/gm+, o-succinylbenzoate synthase | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 2e-13
Identities = 72/313 (23%), Positives = 118/313 (37%), Gaps = 36/313 (11%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
+P AP L + E + +R+ G GWGE LP E + +A +
Sbjct: 1 YRYQMPFDAPVVTRHGLLARREGLIVRLT-DEGRTGWGEIAPLPGFGTET----LAEALD 55
Query: 114 ACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVS 173
C L E + G A + +VA L L G
Sbjct: 56 FCRALIEE--------------ITRGDIEAI------DDQLPSVAFGFESALIELESGDE 95
Query: 174 NTITTDITIPIVSPAEAAELASKYRKQ-GFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSS 231
++ + ++ + A L + K GF T K KVG L + ++ + PD +
Sbjct: 96 LPPASNYYVALLPAGDPALLLLRSAKAEGFRTFKWKVGVGELAREGMLVNLLLEALPDKA 155
Query: 232 FI-LDANEGYKPQEAVEVLEKLYEMGVTPVLF-EQPVHRDDWEGLGHVSHIAKDKFGVSV 289
+ LDAN G P EA + L+ L + F E+P+ D +S ++ G ++
Sbjct: 156 ELRLDANGGLSPDEAQQFLKALDPNLRGRIAFLEEPLPDAD-----EMSAFSEA-TGTAI 209
Query: 290 AADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGAL-EIIEVVRASGLNLMIGGMVETR 348
A DES L + + IK A +G L ++ + GL + + E+
Sbjct: 210 ALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESS 269
Query: 349 LAMGFAGHLSAGL 361
+A+G L+A L
Sbjct: 270 IALGQLARLAAKL 282
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 307 |
| >gnl|CDD|215530 PLN02980, PLN02980, 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 4e-13
Identities = 68/254 (26%), Positives = 109/254 (42%), Gaps = 30/254 (11%)
Query: 20 CQMASSPPAAAAPTSFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQV--ENV 77
CQ A + +S + F + E + L AP T A+ Q E
Sbjct: 905 CQAAEHALGILSESSCLHSIIDGVFLCKISGMEYSLYRIQLCAPPTSASVDFSQFHREGF 964
Query: 78 AIRIELSNGCVGWGE-APVLPHVT----AEDQQTAMV------KASEACEVLKESPAMAL 126
+ + L +G VG+GE AP+ H E+Q ++ K S +LK S + +
Sbjct: 965 ILSLSLEDGSVGFGEVAPLEIHEEDLLDVEEQLRFLLHVIKGAKISFMLPLLKGSFSSWI 1024
Query: 127 GSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRL---FGGVSNTITTDITIP 183
S G+ P F SVR +EMA+++A+A L + + N ++
Sbjct: 1025 WSELGIP----PSSIFPSVRCGLEMAILNAIAVRHGSSLLNILDPYQKDENGSEQSHSVQ 1080
Query: 184 IV-------SPAEAAELASKYRKQGFTTLKLKVGKNLK--EDIEVLRAIR-AVHPDSSFI 233
I SP E A +A K ++GF+ +KLKVG+ + +D V++ +R AV
Sbjct: 1081 ICALLDSNGSPLEVAYVARKLVEEGFSAIKLKVGRRVSPIQDAAVIQEVRKAVGYQIELR 1140
Query: 234 LDANEGYKPQEAVE 247
DAN + +EA+E
Sbjct: 1141 ADANRNWTYEEAIE 1154
|
Length = 1655 |
| >gnl|CDD|222086 pfam13378, MR_MLE_C, Enolase C-terminal domain-like | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 1e-12
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 292 DESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLA 350
ES SL D +++++ D+I + +V G+ AL+I + A G+ + GM E +
Sbjct: 1 GESLYSLADFRRLLEAGAVDIIQPDVTRVGGITEALKIAALAEAFGVPVAPHGM-EGGIG 59
Query: 351 MGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEV 386
+ + HL+A L F ++ P LL +D + V
Sbjct: 60 LAASLHLAAALPNFDILEYV-PYLLPDDLLTGPPPV 94
|
This domain appears at the C-terminus of many of the proteins that carry the MR_MLE, pfam01188 and MR_MLE_N pfam02746 domains. EC:4.2.1.40. Length = 111 |
| >gnl|CDD|201648 pfam01188, MR_MLE, Mandelate racemase / muconate lactonizing enzyme, C-terminal domain | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 2e-12
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 219 VLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 277
+ A+R AV PD +DAN + P+EA+ + L G+ E+P+ DD EGL +
Sbjct: 1 RVAAVREAVGPDVDLRVDANGAWTPEEAIRLARALEPYGLL--WIEEPLPPDDLEGLAEL 58
Query: 278 SHIAKDKFGVSVAAD 292
+ + +AA
Sbjct: 59 ----RRATPIPIAAG 69
|
C-terminal domain is TIM barrel fold, dehydratase-like domain. Manganese is associated with this domain. Length = 69 |
| >gnl|CDD|239443 cd03327, MR_like_2, Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2 | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 42/176 (23%), Positives = 84/176 (47%), Gaps = 16/176 (9%)
Query: 148 AVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPA-EAAELASKYRKQGFTTL 205
AV++AL D + K P+++L GG + I + + E + A +Y K+G+ +
Sbjct: 80 AVDLALWDLLGKIRGEPVYKLLGGRTRDKIPAYASGLYPTDLDELPDEAKEYLKEGYRGM 139
Query: 206 KLKVG-------KNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGV 257
K++ G L++++E++RAIR AV D +LD + A+++ L +
Sbjct: 140 KMRFGYGPSDGHAGLRKNVELVRAIREAVGYDVDLMLDCYMSWNLNYAIKMARALEKYE- 198
Query: 258 TPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 313
E+P+ DD EG + G+ ++ E ++ K++++G D++
Sbjct: 199 -LRWIEEPLIPDDIEGYAELKK----ATGIPISTGEHEYTVYGFKRLLEGRAVDIL 249
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. Length = 341 |
| >gnl|CDD|239445 cd03329, MR_like_4, Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4 | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 1e-09
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 12/129 (9%)
Query: 147 AAVEMALIDAVAKSVSMPLWRLFGG-------VSNTITTDITIPIVSPAEAAELASKYRK 199
V++AL D K + +P+ RL GG ++T+ D + SP A+ A + +
Sbjct: 97 GLVDIALWDLAGKYLGLPVHRLLGGYREKIPAYASTMVGDDLEGLESPEAYADFAEECKA 156
Query: 200 QGFTTLKLK--VGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMG 256
G+ +KL ++ D++ A+R AV PD + D Y +A+ + L E+G
Sbjct: 157 LGYRAIKLHPWGPGVVRRDLKACLAVREAVGPDMRLMHDGAHWYSRADALRLGRALEELG 216
Query: 257 VTPVLFEQP 265
+E P
Sbjct: 217 FF--WYEDP 223
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. Length = 368 |
| >gnl|CDD|239441 cd03325, D-galactonate_dehydratase, D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 1e-08
Identities = 60/269 (22%), Positives = 110/269 (40%), Gaps = 45/269 (16%)
Query: 77 VAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGS-------- 128
+ ++IE G VGWGE V + + V+A+ ++E +G
Sbjct: 15 LFVKIETDEGVVGWGEPTV-------EGKARTVEAA-----VQELEDYLIGKDPMNIEHH 62
Query: 129 -----VFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITI 182
G G G S + ++ AL D K + +P+ +L GG V + + I
Sbjct: 63 WQVMYRGGFYRG---GPVLMSAISGIDQALWDIKGKVLGVPVHQLLGGQVRDRVRVYSWI 119
Query: 183 PIVSPAEAAELASKYRKQGFTTLK---------LKVGKNLKEDIEVLRAIR-AVHPDSSF 232
P++ AE A R+ GFT +K + K + +E + A+R AV PD
Sbjct: 120 GGDRPSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAVGPDIDI 179
Query: 233 ILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD 292
+D + A ++ ++L + E+PV ++ E L ++ + + +A
Sbjct: 180 GVDFHGRVSKPMAKDLAKELEPYR--LLFIEEPVLPENVEALAEIA----ARTTIPIATG 233
Query: 293 ESCRSLDDVKKIVKGNLADVINIKLAKVG 321
E S D K++++ D+I ++ G
Sbjct: 234 ERLFSRWDFKELLEDGAVDIIQPDISHAG 262
|
D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 352 |
| >gnl|CDD|235061 PRK02714, PRK02714, O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 6e-07
Identities = 67/315 (21%), Positives = 121/315 (38%), Gaps = 39/315 (12%)
Query: 53 NRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGE-APVLPHVTAEDQQTAMVKA 111
RP PL + R E + +R+ G +GWGE AP LP +E + A+
Sbjct: 11 QRPFRQPLQTAHGLWRIR----EGIILRLTDETGKIGWGEIAP-LPWFGSETLEEAL--- 62
Query: 112 SEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW-RLFG 170
C+ L +F + L P QF +A+E +++ + L
Sbjct: 63 -AFCQQLPGEITPE--QIFSIPDAL-PACQFG-FESALENESGSRSNVTLNPLSYSALLP 117
Query: 171 GVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRA-IRAVHP 228
+ A + +QG+ T K K+G L++++++ + +
Sbjct: 118 ---------------AGEAALQQWQTLWQQGYRTFKWKIGVDPLEQELKIFEQLLERLPA 162
Query: 229 DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF-EQPVHRDDWEGLGHVSHIAKDKFGV 287
+ LDAN G +EA L+ + F EQP+ D ++ + +S +
Sbjct: 163 GAKLRLDANGGLSLEEAKRWLQLCDRRLSGKIEFIEQPLPPDQFDEMLQLS----QDYQT 218
Query: 288 SVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVET 347
+A DES +L +++ + + IK A G L + + L+ + + ET
Sbjct: 219 PIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGSPSRLR--QFCQQHPLDAVFSSVFET 276
Query: 348 RLAMGFAGHLSAGLG 362
+ A L+A L
Sbjct: 277 AIGRKAALALAAELS 291
|
Length = 320 |
| >gnl|CDD|223226 COG0148, Eno, Enolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 65/254 (25%), Positives = 98/254 (38%), Gaps = 65/254 (25%)
Query: 148 AVEMALIDAVAKSVSMPLWRLFGGVSNTIT-----------------TDITIPIVSPAEA 190
V +A+ A A S+ +PL+R GG++ + DI ++ P A
Sbjct: 112 GVSLAVAKAAAASLGIPLYRYLGGLNALVLPVPMMNVINGGAHADNNLDIQEFMIMPVGA 171
Query: 191 AELASKYRK--QGFTTLK--LK-------VG------KNLKEDIEVL----RAIRAVH-- 227
R + F LK LK VG NLK + E L AI
Sbjct: 172 ESFKEALRAGAEVFHHLKKLLKEKGLSTGVGDEGGFAPNLKSNEEALDILVEAIEEAGYE 231
Query: 228 --PDSSFILD--ANEGYK------------PQEAVEVLEKL---YEMGVTPVLFEQPVHR 268
D + LD A+E YK +E +E +L Y + V E P+
Sbjct: 232 PGEDIALALDVAASEFYKDGKYVLEGESLTSEELIEYYLELVKKYPI----VSIEDPLSE 287
Query: 269 DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL-GALE 327
DDWEG ++ DK + V D + +KK ++ A+ I IK ++G L LE
Sbjct: 288 DDWEGFAELTKRLGDKVQI-VGDDLFVTNPKRLKKGIEKGAANAILIKPNQIGTLTETLE 346
Query: 328 IIEVVRASGLNLMI 341
I + + +G +I
Sbjct: 347 AINLAKDAGYTAVI 360
|
Length = 423 |
| >gnl|CDD|217212 pfam02746, MR_MLE_N, Mandelate racemase / muconate lactonizing enzyme, N-terminal domain | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 4e-05
Identities = 31/122 (25%), Positives = 46/122 (37%), Gaps = 23/122 (18%)
Query: 58 VPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEV 117
+ P +A + Q V +RIE S G VG GEA A +
Sbjct: 10 GWPLRPIQMAFGTVQQQSLVIVRIETSEGVVGIGEATSYGGR--------------AETI 55
Query: 118 LKESPAMALGSVFGVVAGLLPG-----HQFA----SVRAAVEMALIDAVAKSVSMPLWRL 168
+ G A + ++ A S +AA++MAL D AK +++PL L
Sbjct: 56 KAILDDHLAPLLIGRDAANISDLWQLMYRAALGNMSAKAAIDMALWDLKAKVLNLPLADL 115
Query: 169 FG 170
G
Sbjct: 116 LG 117
|
SCOP reports fold similarity with enolase N-terminal domain. Length = 117 |
| >gnl|CDD|239438 cd03322, rpsA, The starvation sensing protein RpsA from E | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 19/108 (17%)
Query: 147 AAVEMALIDAVAKSVSMPLWRLFGGVSNTI------TTDITIPIVSPAEAAELASKYRKQ 200
AAV+MAL D K+ MPL++L GG S + IP E E ++ Q
Sbjct: 86 AAVDMALWDIKGKAAGMPLYQLLGGKSRDGIMVYSHASGRDIP-----ELLEAVERHLAQ 140
Query: 201 GFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFIL-DANEGYKPQEAVE 247
G+ +++++ K + A+R +L D + P +A
Sbjct: 141 GYRAIRVQLPK-------LFEAVREKFGFEFHLLHDVHHRLTPNQAAR 181
|
coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad. Length = 361 |
| >gnl|CDD|184455 PRK14017, PRK14017, galactonate dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 74/297 (24%), Positives = 122/297 (41%), Gaps = 65/297 (21%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS--EACEVL-KESPA--------MALG 127
++IE G VGWGE PV+ + + V+A+ E + L + P M G
Sbjct: 18 LKIETDEGIVGWGE-PVV------EGRARTVEAAVHELADYLIGKDPRRIEDHWQVMYRG 70
Query: 128 SVF--GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPI 184
+ G + S A ++ AL D K++ +P+ L GG V + I I
Sbjct: 71 GFYRGGPI--------LMSAIAGIDQALWDIKGKALGVPVHELLGGLVRDRIRVYSWIGG 122
Query: 185 VSPAEAAELASKYRKQGFTTLKLKVGKNLK---------EDIEVLRAIR-AVHPDSSFIL 234
PA+ AE A ++GFT +K+ + L+ + + A+R AV P+ +
Sbjct: 123 DRPADVAEAARARVERGFTAVKMNGTEELQYIDSPRKVDAAVARVAAVREAVGPEIGIGV 182
Query: 235 DANEG--YKPQEAV--EVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVA 290
D + G +KP V + LE M + E+PV ++ E L ++ + +A
Sbjct: 183 DFH-GRVHKPMAKVLAKELEPYRPMFI-----EEPVLPENAEALPEIAAQT----SIPIA 232
Query: 291 ADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVET 347
E S D K++++ D+I L+ G G I E + I M E
Sbjct: 233 TGERLFSRWDFKRVLEAGGVDIIQPDLSHAG--G---ITECRK-------IAAMAEA 277
|
Length = 382 |
| >gnl|CDD|239442 cd03326, MR_like_1, Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1 | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.001
Identities = 41/173 (23%), Positives = 79/173 (45%), Gaps = 20/173 (11%)
Query: 147 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVS------PAE-----AAELAS 195
A++MA+ DAVAK +PL+RL D +P+ + P + E+
Sbjct: 111 GALDMAVWDAVAKIAGLPLYRLLARRYGRGQADPRVPVYAAGGYYYPGDDLGRLRDEMRR 170
Query: 196 KYRKQGFTTLKLKVG-KNLKEDIE-VLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLY 253
Y +G+T +K+K+G L ED+ + A+ + + +DAN + + A+ + L
Sbjct: 171 -YLDRGYTVVKIKIGGAPLDEDLRRIEAALDVLGDGARLAVDANGRFDLETAIAYAKALA 229
Query: 254 EMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVK 306
G+ +E+P D+ ++ D + +A E+ SL D + +++
Sbjct: 230 PYGL--RWYEEPGDPLDYALQAELA----DHYDGPIATGENLFSLQDARNLLR 276
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. Length = 385 |
| >gnl|CDD|239439 cd03323, D-glucarate_dehydratase, D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 34/140 (24%)
Query: 142 FASVRAAVEMALIDAVAKSVSMPLWRLFGG--------------VSNTITTDITIP---- 183
V A E+AL+D + +++ +P+ L GG + TD+ P
Sbjct: 102 TVHVVTAFEVALLDLLGQALGVPVADLLGGGQRDSVPFLAYLFYKGDRHKTDLPYPWFRD 161
Query: 184 ----------IVSPAEAAELASKYRKQGFTTLKLKVGKNLKED-IEVLRAIRAVHPDSSF 232
+V A AA + GF + KLK G E+ IE ++A+ P +
Sbjct: 162 RWGEALTPEGVVRLARAA-----IDRYGFKSFKLKGGVLPGEEEIEAVKALAEAFPGARL 216
Query: 233 ILDANEGYKPQEAVEVLEKL 252
LD N + + A+ + ++L
Sbjct: 217 RLDPNGAWSLETAIRLAKEL 236
|
GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. Length = 395 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 409 | |||
| TIGR02534 | 368 | mucon_cyclo muconate and chloromuconate cycloisome | 100.0 | |
| cd03318 | 365 | MLE Muconate Lactonizing Enzyme (MLE), an homoocta | 100.0 | |
| cd03317 | 354 | NAAAR N-acylamino acid racemase (NAAAR), an octame | 100.0 | |
| cd03328 | 352 | MR_like_3 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| cd03321 | 355 | mandelate_racemase Mandelate racemase (MR) catalyz | 100.0 | |
| cd03323 | 395 | D-glucarate_dehydratase D-Glucarate dehydratase (G | 100.0 | |
| PRK15072 | 404 | bifunctional D-altronate/D-mannonate dehydratase; | 100.0 | |
| cd03329 | 368 | MR_like_4 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| PRK14017 | 382 | galactonate dehydratase; Provisional | 100.0 | |
| cd03316 | 357 | MR_like Mandelate racemase (MR)-like subfamily of | 100.0 | |
| cd03325 | 352 | D-galactonate_dehydratase D-galactonate dehydratas | 100.0 | |
| cd03326 | 385 | MR_like_1 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| cd03322 | 361 | rpsA The starvation sensing protein RpsA from E.co | 100.0 | |
| cd03327 | 341 | MR_like_2 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| cd03324 | 415 | rTSbeta_L-fuconate_dehydratase Human rTS beta is e | 100.0 | |
| TIGR03247 | 441 | glucar-dehydr glucarate dehydratase. Glucarate deh | 100.0 | |
| COG4948 | 372 | L-alanine-DL-glutamate epimerase and related enzym | 100.0 | |
| TIGR01928 | 324 | menC_lowGC/arch o-succinylbenzoic acid (OSB) synth | 100.0 | |
| PRK15440 | 394 | L-rhamnonate dehydratase; Provisional | 100.0 | |
| PRK15129 | 321 | L-Ala-D/L-Glu epimerase; Provisional | 100.0 | |
| cd03319 | 316 | L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat | 100.0 | |
| cd03315 | 265 | MLE_like Muconate lactonizing enzyme (MLE) like su | 100.0 | |
| TIGR01927 | 307 | menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthe | 100.0 | |
| cd03320 | 263 | OSBS o-Succinylbenzoate synthase (OSBS) catalyzes | 100.0 | |
| PRK05105 | 322 | O-succinylbenzoate synthase; Provisional | 100.0 | |
| PRK02714 | 320 | O-succinylbenzoate synthase; Provisional | 100.0 | |
| TIGR01502 | 408 | B_methylAsp_ase methylaspartate ammonia-lyase. Thi | 100.0 | |
| cd03314 | 369 | MAL Methylaspartate ammonia lyase (3-methylasparta | 100.0 | |
| cd00308 | 229 | enolase_like Enolase-superfamily, characterized by | 100.0 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 100.0 | |
| PRK02901 | 327 | O-succinylbenzoate synthase; Provisional | 100.0 | |
| PRK00077 | 425 | eno enolase; Provisional | 100.0 | |
| cd03313 | 408 | enolase Enolase: Enolases are homodimeric enzymes | 100.0 | |
| TIGR01060 | 425 | eno phosphopyruvate hydratase. Alternate name: eno | 100.0 | |
| PLN00191 | 457 | enolase | 100.0 | |
| PTZ00081 | 439 | enolase; Provisional | 99.98 | |
| COG1441 | 321 | MenC O-succinylbenzoate synthase [Coenzyme metabol | 99.93 | |
| PF02746 | 117 | MR_MLE_N: Mandelate racemase / muconate lactonizin | 99.9 | |
| PF13378 | 111 | MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FC | 99.87 | |
| COG0148 | 423 | Eno Enolase [Carbohydrate transport and metabolism | 99.8 | |
| PRK08350 | 341 | hypothetical protein; Provisional | 99.78 | |
| PF01188 | 67 | MR_MLE: Mandelate racemase / muconate lactonizing | 99.66 | |
| PTZ00378 | 518 | hypothetical protein; Provisional | 99.65 | |
| COG3799 | 410 | Mal Methylaspartate ammonia-lyase [Amino acid tran | 99.57 | |
| KOG2670 | 433 | consensus Enolase [Carbohydrate transport and meta | 99.5 | |
| PF07476 | 248 | MAAL_C: Methylaspartate ammonia-lyase C-terminus; | 99.34 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 99.08 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 99.07 | |
| PF00113 | 295 | Enolase_C: Enolase, C-terminal TIM barrel domain; | 99.06 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 98.84 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 98.69 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 98.63 | |
| PF03952 | 132 | Enolase_N: Enolase, N-terminal domain; InterPro: I | 98.37 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 97.78 | |
| PF05034 | 159 | MAAL_N: Methylaspartate ammonia-lyase N-terminus; | 97.56 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 97.41 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 97.33 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 97.1 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 97.01 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 97.0 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 96.93 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 96.92 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 96.91 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 96.9 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 96.88 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 96.72 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 96.71 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 96.61 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 96.57 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 96.26 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 96.22 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 96.14 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzym | 96.13 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 96.11 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 95.88 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 95.57 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 95.34 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 95.27 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 94.96 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 94.82 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 94.65 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 94.47 | |
| COG0821 | 361 | gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat | 94.39 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 93.75 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 93.71 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 93.51 | |
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 93.4 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 93.33 | |
| PRK00366 | 360 | ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s | 93.28 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 92.97 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 92.81 | |
| TIGR00612 | 346 | ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho | 92.65 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 92.63 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 92.41 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 92.05 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 91.79 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 91.77 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 91.75 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 91.5 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 91.35 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 91.28 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 91.24 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 91.18 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 91.04 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 91.03 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 90.9 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 90.79 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 90.71 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 90.62 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 90.57 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 90.49 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 90.48 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 90.33 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 90.17 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 90.13 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 90.09 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 90.02 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 89.94 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 89.88 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 89.87 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 89.69 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 89.65 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 89.63 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 89.22 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 89.19 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 89.16 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 89.1 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 89.0 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 88.92 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 88.64 | |
| PLN02411 | 391 | 12-oxophytodienoate reductase | 88.26 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 88.03 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 88.02 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 87.92 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 87.65 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 87.65 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 87.31 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 87.17 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 87.15 | |
| cd06660 | 285 | Aldo_ket_red Aldo-keto reductases (AKRs) are a sup | 86.84 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 86.76 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 86.53 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 86.27 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 86.13 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 86.11 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 85.67 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 85.61 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 85.54 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 85.5 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 85.45 | |
| cd00956 | 211 | Transaldolase_FSA Transaldolase-like fructose-6-ph | 85.39 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 85.35 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 85.04 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 84.98 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 84.92 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 84.91 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 84.8 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 84.49 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 84.37 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 83.93 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 83.91 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 83.67 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 83.66 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 83.41 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 83.39 | |
| PLN02591 | 250 | tryptophan synthase | 83.12 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 82.96 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 82.94 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 81.77 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 81.72 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 81.61 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 81.6 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 81.53 | |
| TIGR00167 | 288 | cbbA ketose-bisphosphate aldolases. fructose-bisph | 81.42 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 81.37 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 81.31 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 81.1 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 81.06 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 80.95 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 80.94 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 80.77 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 80.5 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 80.48 | |
| PRK05835 | 307 | fructose-bisphosphate aldolase; Provisional | 80.18 |
| >TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-70 Score=548.26 Aligned_cols=354 Identities=25% Similarity=0.398 Sum_probs=317.3
Q ss_pred EeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccC--CccCcccHHHHHHHHH-HHHHHHcCCCCC
Q 015289 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKAS-EACEVLKESPAM 124 (409)
Q Consensus 48 I~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~--~~~~~e~~~~~~~~~~-~~~~~l~g~~~~ 124 (409)
|++|+++++++|++.||+++.++...++.++|||+|++|++||||+.+. |.+++++.......++ .++|.++|+++.
T Consensus 1 I~~i~~~~~~~pl~~~~~~~~~~~~~~~~~~V~v~t~~G~~G~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~ 80 (368)
T TIGR02534 1 IQSVETILVDVPTIRPHKLATTTMTEQTLVLVRIRTEDGVIGYGEGTTIGGLWWGGESPETIKANIDTYLAPVLVGRDAT 80 (368)
T ss_pred CeEEEEEEEeccccCceEEeeEEEeeccEEEEEEEECCCCeEEEecCCCCCCccCCCCHHHHHHHHHHhhHHHHcCCChh
Confidence 7899999999999999999999999999999999999999999999865 4566666554444454 478999999999
Q ss_pred CHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHH-HcCC
Q 015289 125 ALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYR-KQGF 202 (409)
Q Consensus 125 ~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~-~~Gf 202 (409)
+++.+++.+.+.+.++ ..+++|||+||||++||.+|+|+|+||||. +++|++|++++..++++..+.++++. ++||
T Consensus 81 ~~~~~~~~~~~~~~~~--~~a~said~AlwDl~gK~~g~Pv~~LLGg~~r~~v~~~~~~~~~~~~~~~~~~~~~~~~~Gf 158 (368)
T TIGR02534 81 EIAAIMADLEKVVAGN--RFAKAAVDTALHDAQARRLGVPVSELLGGRVRDSVDVTWTLASGDTDRDIAEAEERIEEKRH 158 (368)
T ss_pred hHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCceEEEEEEeCCCHHHHHHHHHHHHHhcCc
Confidence 9999998887655443 247999999999999999999999999996 67899999888777776666666655 5899
Q ss_pred CeEEEecC-CChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHH
Q 015289 203 TTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 280 (409)
Q Consensus 203 ~~~KiKvG-~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~ 280 (409)
++||+|+| .++++|+++|+++|+. ++++.|++|+|++|++++|+++++.|+++++ .|||||++++|++++++|++
T Consensus 159 ~~~KiKvg~~~~~~d~~~v~~~re~~g~~~~l~~DaN~~~~~~~A~~~~~~l~~~~~--~~iEeP~~~~d~~~~~~l~~- 235 (368)
T TIGR02534 159 RSFKLKIGARDPADDVAHVVAIAKALGDRASVRVDVNAAWDERTALHYLPQLADAGV--ELIEQPTPAENREALARLTR- 235 (368)
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHHhcCh--hheECCCCcccHHHHHHHHH-
Confidence 99999998 4788999999999997 7999999999999999999999999999986 59999999999999999874
Q ss_pred hhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHc
Q 015289 281 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSA 359 (409)
Q Consensus 281 ~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaa 359 (409)
++++||++||++++++++.++++.+++|++|+|++++| ++++++++++|+++|+++++||+++|+++.++++|+++
T Consensus 236 ---~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~i~~aa~~h~~a 312 (368)
T TIGR02534 236 ---RFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGPIGTIASAHFFA 312 (368)
T ss_pred ---hCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred cCCCCce-eccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCcC
Q 015289 360 GLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409 (409)
Q Consensus 360 a~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~~ 409 (409)
+++++.+ .|+++++++.+|++.+++.++||++.+|++||||+++|++.++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~~d~~~~~ 363 (368)
T TIGR02534 313 TFPALSFGTELFGPLLLKDEILTEPLQYEDFQLHLPQGPGLGVEVDEDKVN 363 (368)
T ss_pred hCCCCccccccccHHHhhhccccCCceeeCCEEecCCCCcCCcccCHHHHH
Confidence 9999877 5777776667788888899999999999999999999998763
|
This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2). |
| >cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-70 Score=546.39 Aligned_cols=355 Identities=26% Similarity=0.397 Sum_probs=321.4
Q ss_pred eEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCC--ccCcccHHHHHHHHH-HHHHHHcCCCC
Q 015289 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP--HVTAEDQQTAMVKAS-EACEVLKESPA 123 (409)
Q Consensus 47 kI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~--~~~~e~~~~~~~~~~-~~~~~l~g~~~ 123 (409)
||++++++++++|++.||.++.++.+.++.++|||+|++|.+||||+.+.+ .+++++...+...++ .+.|.++|+++
T Consensus 1 ~I~~i~~~~~~lpl~~~~~~~~~~~~~~~~~~V~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~G~~~ 80 (365)
T cd03318 1 KIEAIETTIVDLPTRRPHQFAGTTMHTQSLVLVRLTTSDGVVGIGEATTPGGPAWGGESPETIKAIIDRYLAPLLIGRDA 80 (365)
T ss_pred CeEEEEEEEEeccccCceEEeeeeEeecceEEEEEEECCCCeEEEecCCCCCCccCCCCHHHHHHHHHHhhHHHHcCCCh
Confidence 699999999999999999999999999999999999999999999998653 455666555444554 46899999999
Q ss_pred CCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHHcC-
Q 015289 124 MALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQG- 201 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~G- 201 (409)
.+++.+++.++....++ ..+++||||||||++||..|+|+|+||||. ++++|+|++++..+++++.+++++++++|
T Consensus 81 ~~~~~~~~~l~~~~~~~--~~a~said~AlwDl~gK~~g~Pl~~LLGg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~ 158 (365)
T cd03318 81 TNIGAAMALLDRAVAGN--LFAKAAIEMALLDAQGRRLGLPVSELLGGRVRDSLPVAWTLASGDTERDIAEAEEMLEAGR 158 (365)
T ss_pred HHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHhHcCCCHHHHcCCCcCCceEEEEEEeCCCHHHHHHHHHHHHhCCC
Confidence 99999998887754443 347999999999999999999999999996 67899999888778888888888899999
Q ss_pred CCeEEEecCC-ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHH
Q 015289 202 FTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 279 (409)
Q Consensus 202 f~~~KiKvG~-~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~ 279 (409)
|++||+|+|. ++++|+++|+++|+. ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|++
T Consensus 159 f~~~KiKvg~~~~~~d~~~v~avr~~~g~~~~l~iDaN~~~~~~~A~~~~~~l~~~~~--~~iEeP~~~~~~~~~~~l~~ 236 (365)
T cd03318 159 HRRFKLKMGARPPADDLAHVEAIAKALGDRASVRVDVNQAWDESTAIRALPRLEAAGV--ELIEQPVPRENLDGLARLRS 236 (365)
T ss_pred ceEEEEEeCCCChHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHhcCc--ceeeCCCCcccHHHHHHHHh
Confidence 9999999994 788999999999998 6799999999999999999999999999987 49999999999999999975
Q ss_pred HhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHH
Q 015289 280 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLS 358 (409)
Q Consensus 280 ~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hla 358 (409)
++++||++||++.++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++||+++++++.++++|++
T Consensus 237 ----~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~s~i~~aa~~hla 312 (365)
T cd03318 237 ----RNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLESSIGTAASAHLF 312 (365)
T ss_pred ----hcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcchhHHHHHHHHHHH
Confidence 68999999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred ccCCCCce-eccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCcC
Q 015289 359 AGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409 (409)
Q Consensus 359 aa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~~ 409 (409)
+++++..+ .|++.++.+.+|++.+++.++||++.+|++||||+++|++.|+
T Consensus 313 aa~~~~~~~~e~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~~d~~~l~ 364 (365)
T cd03318 313 ATLPSLPFGCELFGPLLLAEDLLEEPLAYRDGELHVPTGPGLGVRLDEDKVR 364 (365)
T ss_pred HhCCCCcccccccchHhhhcccccCCceeECCEEeCCCCCcCCcccCHHHhc
Confidence 99998767 6777776666788878889999999999999999999999875
|
This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. |
| >cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-67 Score=525.14 Aligned_cols=346 Identities=25% Similarity=0.407 Sum_probs=308.9
Q ss_pred EEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccC--CccCcccHHHHHHHHHH-HHHHHcCCCCCCHH
Q 015289 51 AENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKESPAMALG 127 (409)
Q Consensus 51 i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~~~~~~~ 127 (409)
|+++++++|+++||+++.++.+.++.++|||+|++|++||||+.+. +++++|+...+...+++ +.|.++|+++.+++
T Consensus 1 ~~~~~~~~pl~~p~~~~~~~~~~~~~~~Vrv~t~~G~~G~GE~~~~~~~~~~~~~~~~~~~~i~~~~~p~l~g~~~~~~~ 80 (354)
T cd03317 1 IELFHVRMPLKFPFETSFGTLNEREFLIVELTDEEGITGYGEVVAFEGPFYTEETNATAWHILKDYLLPLLLGREFSHPE 80 (354)
T ss_pred CEEEEEEecccCceEccceEEEeeeEEEEEEEECCCCeEEEecCCCCCCcccCCCHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 5789999999999999999999999999999999999999999864 56777877666666654 68999999999999
Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCCCH-HHHHHHHHHHHHcCCCeEE
Q 015289 128 SVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSP-AEAAELASKYRKQGFTTLK 206 (409)
Q Consensus 128 ~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~-~~~~~~~~~~~~~Gf~~~K 206 (409)
.+++.+.+ +.++ ..+++||||||||++||.+|+|+|+||||.++++|+|.+++..++ +++.+++++++++||++||
T Consensus 81 ~~~~~~~~-~~~~--~~a~aaid~AlwDl~gk~~g~Pv~~LLGg~~~~v~~~~s~~~~~~~~~~~~~~~~~~~~Gf~~~K 157 (354)
T cd03317 81 EVSERLAP-IKGN--NMAKAGLEMAVWDLYAKAQGQSLAQYLGGTRDSIPVGVSIGIQDDVEQLLKQIERYLEEGYKRIK 157 (354)
T ss_pred HHHHHHHH-hcCC--hHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCeEEeeEEEeCCCcHHHHHHHHHHHHHcCCcEEE
Confidence 99988876 3443 358999999999999999999999999998889999999887765 8899999999999999999
Q ss_pred EecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCC
Q 015289 207 LKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG 286 (409)
Q Consensus 207 iKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ 286 (409)
+|++. +.|++++++||+..+++.|++|+|++|+.++|. ++++|+++++ .|||||++++|++++++|++ +++
T Consensus 158 iKv~~--~~d~~~l~~vr~~~g~~~l~lDaN~~~~~~~a~-~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~ 228 (354)
T cd03317 158 LKIKP--GWDVEPLKAVRERFPDIPLMADANSAYTLADIP-LLKRLDEYGL--LMIEQPLAADDLIDHAELQK----LLK 228 (354)
T ss_pred EecCh--HHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHH-HHHHhhcCCc--cEEECCCChhHHHHHHHHHh----hcC
Confidence 99974 689999999999855999999999999999985 8999999987 49999999999999999874 789
Q ss_pred CeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCc
Q 015289 287 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFK 365 (409)
Q Consensus 287 ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~ 365 (409)
+||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.+|+++.++++|++ ++++..
T Consensus 229 ~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~g~~~es~l~~~a~~hla-~~~~~~ 307 (354)
T cd03317 229 TPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEHGIPVWCGGMLESGIGRAHNVALA-SLPNFT 307 (354)
T ss_pred CCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEecCcccchHHHHHHHHHH-hCCCCC
Confidence 99999999999999999999999999999999998 9999999999999999999999999999999999996 566655
Q ss_pred ee-ccccc-cccccCCCCCCeeeeCcEEecCCCCCcccccCCCCcC
Q 015289 366 FI-DLDTP-LLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409 (409)
Q Consensus 366 ~~-e~~~p-~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~~ 409 (409)
+. +++.. ..+.+|++.++++++||++.+|++||||+++|++.|+
T Consensus 308 ~~~~~~~~~~~~~~dl~~~~~~~~~G~~~~p~~pGlG~~~d~~~l~ 353 (354)
T cd03317 308 YPGDISASSRYFEEDIITPPFELENGIISVPTGPGIGVTVDREALK 353 (354)
T ss_pred CccccCcchhhhhhccccCCeEeeCCEEECCCCCcCceecCHHHhc
Confidence 53 44332 2456788877889999999999999999999999874
|
NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-67 Score=524.33 Aligned_cols=339 Identities=22% Similarity=0.313 Sum_probs=294.8
Q ss_pred eEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCCH
Q 015289 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMAL 126 (409)
Q Consensus 47 kI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~ 126 (409)
||++++++.+++|++.||..+..++..++.++|||+| +|++||||+. +.+.....+ .+.+.|.|+|+++.++
T Consensus 1 ~I~~i~~~~~~~pl~~p~~~~~~~~~~~~~v~V~v~~-~G~~G~Ge~~-----~~~~~~~~i--~~~~~p~liG~d~~~~ 72 (352)
T cd03328 1 AVERVEARAYTVPTDAPEADGTLAWDATTLVLVEVRA-GGRTGLGYTY-----ADAAAAALV--DGLLAPVVEGRDALDP 72 (352)
T ss_pred CeeEEEEEEEEccCCCcccCCccceeeeeEEEEEEEc-CCcEEEeCCC-----ChHHHHHHH--HHHHHHHhcCCCcccH
Confidence 7999999999999999996665555678899999997 7999999863 223322222 1347899999999999
Q ss_pred HHHHHHHHhhcC----CChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecC--CCHHHHHHHHHHHHHc
Q 015289 127 GSVFGVVAGLLP----GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI--VSPAEAAELASKYRKQ 200 (409)
Q Consensus 127 ~~~~~~~~~~~~----g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~--~~~~~~~~~~~~~~~~ 200 (409)
+.+|+.+++... +.....+++||||||||++||.+|+|||+||||.+++||+|.+++. .+++++.+++++++++
T Consensus 73 ~~l~~~~~~~~~~~~~~g~~~~a~aaiD~AlwDl~gK~~g~Pv~~LLGg~~~~v~~y~s~~~~~~~~e~~~~~a~~~~~~ 152 (352)
T cd03328 73 PAAWEAMQRAVRNAGRPGVAAMAISAVDIALWDLKARLLGLPLARLLGRAHDSVPVYGSGGFTSYDDDRLREQLSGWVAQ 152 (352)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhcCCCCCeEEEEecCCCCCCHHHHHHHHHHHHHC
Confidence 999999976421 1122368999999999999999999999999998889999988653 3688899999999999
Q ss_pred CCCeEEEecCCChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHH
Q 015289 201 GFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 279 (409)
Q Consensus 201 Gf~~~KiKvG~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~ 279 (409)
||+++|+|+|.++++|+++++++|++ ++++.|++|+|++|++++|+++++.|+++++ .|+|||++++|+++|++|++
T Consensus 153 Gf~~~Kikvg~~~~~d~~~v~~vRe~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~--~~~EeP~~~~d~~~~~~l~~ 230 (352)
T cd03328 153 GIPRVKMKIGRDPRRDPDRVAAARRAIGPDAELFVDANGAYSRKQALALARAFADEGV--TWFEEPVSSDDLAGLRLVRE 230 (352)
T ss_pred CCCEEEeecCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHhCc--chhhCCCChhhHHHHHHHHh
Confidence 99999999998889999999999997 7899999999999999999999999999987 49999999999999999974
Q ss_pred Hhhcc--CCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHH
Q 015289 280 IAKDK--FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 356 (409)
Q Consensus 280 ~~~~~--~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~h 356 (409)
+ +++||++||++++.++++++++.+++|++|+|++|+| ++++++++++|+++|+++++|++ .++++|
T Consensus 231 ----~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~d~~~~GGit~~~~ia~~A~a~gi~~~~h~~------~~a~~h 300 (352)
T cd03328 231 ----RGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADVTRCGGVTGFLQAAALAAAHHVDLSAHCA------PALHAH 300 (352)
T ss_pred ----hCCCCCCEEecccccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeccCch------HHHHHH
Confidence 6 7799999999999999999999999999999999998 99999999999999999999984 357899
Q ss_pred HHccCCCCceeccccc-cccccCCCCCCeeeeCcEEecCC-CCCcccccCC
Q 015289 357 LSAGLGCFKFIDLDTP-LLLSEDPVLDGYEVSGAVYKFTN-ARGHGGFLHW 405 (409)
Q Consensus 357 laaa~~~~~~~e~~~p-~~~~~d~~~~~~~~~~G~i~~p~-~PGlG~~~d~ 405 (409)
+++++||+.+.|+..+ ..+.++++.++++++||++.+|+ +||||+++||
T Consensus 301 l~aa~~n~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~PGLGv~~d~ 351 (352)
T cd03328 301 VACAVPRLRHLEWFHDHVRIERMLFDGAPDPSGGALRPDLSRPGLGLELRA 351 (352)
T ss_pred HHHhCCCCccceecccchhhhHHhccCCCcccCCEEeCCCCCCccceecCC
Confidence 9999999888776432 23345666777888999999987 7999999997
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-68 Score=526.38 Aligned_cols=345 Identities=20% Similarity=0.264 Sum_probs=301.3
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (409)
|||++++++++++|+++||.++.++.+.++.++|||+|++|++||||+.. +++++.+.+...++.+.|.|+|++. +
T Consensus 1 ~~I~~v~~~~~~~pl~~~~~~~~~~~~~~~~v~V~v~t~~G~~G~Ge~~~---~~~~~~~~~~~~~~~l~p~LiG~~~-~ 76 (355)
T cd03321 1 VLITGLRARAVNVPMQYPVHTSVGTVATAPLVLIDLATDEGVTGHSYLFT---YTPAALKSLKQLLDDMAALLVGEPL-A 76 (355)
T ss_pred CeeEEEEEEEEEccCCCccccccceeccCcEEEEEEEECCCCeEEEeeec---CCCCcHHHHHHHHHHHHHHhCCCCC-C
Confidence 79999999999999999999999998889999999999999999999653 3455544444444568999999975 5
Q ss_pred HHHHHHHHHhhc---CC-ChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHcC
Q 015289 126 LGSVFGVVAGLL---PG-HQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQG 201 (409)
Q Consensus 126 ~~~~~~~~~~~~---~g-~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~G 201 (409)
.+++++.+.+.. .+ .....+++||||||||++||.+|+|||+||||.++++|+|.+++..+++++.+++++++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~a~aaid~AlwDl~gk~~g~Pv~~LlGg~~~~v~~y~s~~~~~~~~~~~~a~~~~~~G 156 (355)
T cd03321 77 PAELERALAKRFRLLGYTGLVRMAAAGIDMAAWDALAKVHGLPLAKLLGGNPRPVQAYDSHGLDGAKLATERAVTAAEEG 156 (355)
T ss_pred hHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeeEEEeCCCChHHHHHHHHHHHHHhh
Confidence 676766654432 11 12246899999999999999999999999999888999999988888899999999999999
Q ss_pred CCeEEEecCC-ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHH
Q 015289 202 FTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 279 (409)
Q Consensus 202 f~~~KiKvG~-~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~ 279 (409)
|++||+|+|. +++.|+++++++|+. +|++.|++|+|++|+.++|+++++.|+++++ .|||||++++|+++|++|++
T Consensus 157 f~~~KiKvg~~~~~~d~~~v~air~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~ 234 (355)
T cd03321 157 FHAVKTKIGYPTADEDLAVVRSIRQAVGDGVGLMVDYNQSLTVPEAIERGQALDQEGL--TWIEEPTLQHDYEGHARIAS 234 (355)
T ss_pred hHHHhhhcCCCChHhHHHHHHHHHHhhCCCCEEEEeCCCCcCHHHHHHHHHHHHcCCC--CEEECCCCCcCHHHHHHHHH
Confidence 9999999984 688999999999997 7999999999999999999999999999987 49999999999999999975
Q ss_pred HhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHH
Q 015289 280 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLS 358 (409)
Q Consensus 280 ~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hla 358 (409)
++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. + .++|++
T Consensus 235 ----~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~~A~~~gi~~~~h~~~--~----~~~h~~ 304 (355)
T cd03321 235 ----ALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASALAEQAGIPMSSHLFQ--E----ISAHLL 304 (355)
T ss_pred ----hcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHHHHHHcCCeecccchH--H----HHHHHH
Confidence 68899999999999999999999999999999999998 999999999999999999999852 2 468999
Q ss_pred ccCCCCceeccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCcC
Q 015289 359 AGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409 (409)
Q Consensus 359 aa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~~ 409 (409)
+++++..++|+.. +..+++.++++++||++.+|++||||+++|+++|+
T Consensus 305 aa~~~~~~~e~~~---~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~ 352 (355)
T cd03321 305 AVTPTAHWLEYVD---WAGAILEPPLKFEDGNAVIPDEPGNGIIWREKAVR 352 (355)
T ss_pred HhCCCcceeeccc---hHHHHhcCCcEEECCEEECCCCCcCCcccCHHHHH
Confidence 9999887776421 22345567789999999999999999999999763
|
MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-67 Score=523.67 Aligned_cols=345 Identities=19% Similarity=0.233 Sum_probs=297.3
Q ss_pred eEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCC-CC
Q 015289 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA-MA 125 (409)
Q Consensus 47 kI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~-~~ 125 (409)
||++|+++++.+|++.||+++.+....++.++|||+||+|++||||++.. .+... .+.+++|.++|.++ .+
T Consensus 1 ~I~~i~~~~~~~p~~~p~~~~~~~~~~~~~~~Vrv~td~G~~G~Ge~~~~----~~~~~----~~~~~~~~llg~~~~~~ 72 (395)
T cd03323 1 KITEMRVTPVAGHDSPLLNLSGAHEPFFTRNIVELTDDNGNTGVGESPGG----AEALE----ALLEAARSLVGGDVFGA 72 (395)
T ss_pred CeEEEEEEEEeccCCccccccccCCCcceEEEEEEEECCCCeeccccCCC----HHHHH----HHHHHhHHHhCCCcchh
Confidence 69999999999999999999877767789999999999999999997631 12222 23457788888777 57
Q ss_pred HHHHHHHHHhhcC--CC-----------hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeec--------
Q 015289 126 LGSVFGVVAGLLP--GH-----------QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIP-------- 183 (409)
Q Consensus 126 ~~~~~~~~~~~~~--g~-----------~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~-------- 183 (409)
.+.+|+.+++... ++ ....+++||||||||++||.+|+|+|+||||. ++++|+|.++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pl~~LLGG~~r~~v~~ya~~~~~~~~~~~ 152 (395)
T cd03323 73 YLAVLESVRVAFADRDAGGRGLQTFDLRTTVHVVTAFEVALLDLLGQALGVPVADLLGGGQRDSVPFLAYLFYKGDRHKT 152 (395)
T ss_pred hHHHHHHHHHHHhcccccccCccccchhHHHHHHHHHHHHHHHHhhhhcCCCHHHHhCCCccCeEEEEEEeeeccccccc
Confidence 8888988876431 11 13568999999999999999999999999996 77999998642
Q ss_pred -------------CCCHHHHHHHHHHHHH-cCCCeEEEecCC-ChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHH
Q 015289 184 -------------IVSPAEAAELASKYRK-QGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEV 248 (409)
Q Consensus 184 -------------~~~~~~~~~~~~~~~~-~Gf~~~KiKvG~-~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~ 248 (409)
..+++++.++++++++ +||++||+|+|. ++++|+++++++|++.+++.|++|+|++|++++|+++
T Consensus 153 ~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v~avRea~~~~~l~vDaN~~w~~~~A~~~ 232 (395)
T cd03323 153 DLPYPWFRDRWGEALTPEGVVRLARAAIDRYGFKSFKLKGGVLPGEEEIEAVKALAEAFPGARLRLDPNGAWSLETAIRL 232 (395)
T ss_pred cccccccccccccCCCHHHHHHHHHHHHHhcCCcEEEEecCCCCHHHHHHHHHHHHHhCCCCcEEEeCCCCcCHHHHHHH
Confidence 3478889899988875 699999999994 6789999999999987899999999999999999999
Q ss_pred HHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHH
Q 015289 249 LEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALE 327 (409)
Q Consensus 249 ~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~ 327 (409)
+++|++ ++. |||||++ |+++|++|++ ++++||++||++++.++++++++.+++|++|+|++++| ++++++
T Consensus 233 ~~~l~~-~l~--~iEeP~~--d~~~~~~L~~----~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~k 303 (395)
T cd03323 233 AKELEG-VLA--YLEDPCG--GREGMAEFRR----ATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVR 303 (395)
T ss_pred HHhcCc-CCC--EEECCCC--CHHHHHHHHH----hcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHHH
Confidence 999999 874 9999998 8999999875 68899999999999999999999999999999999998 999999
Q ss_pred HHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCce-eccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCC
Q 015289 328 IIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWD 406 (409)
Q Consensus 328 i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d 406 (409)
++++|+++|+++++|++.+++++.++++|++++++|+.+ +|...++...++++.++++++||++.+|++||||+++|++
T Consensus 304 ia~~A~~~gi~~~~h~~~e~~i~~aa~~hlaaa~~~~~~~~d~~~~~~~~~~~~~~~~~~~~G~~~vp~~PGLGv~~d~~ 383 (395)
T cd03323 304 VAQVCETWGLGWGMHSNNHLGISLAMMTHVAAAAPGLITACDTHWIWQDGQVITGEPLRIKDGKVAVPDKPGLGVELDRD 383 (395)
T ss_pred HHHHHHHcCCeEEEecCcccHHHHHHHHHHHHhCCCcccccccchhhhccccccCCCceeeCCEEECCCCCcCCccCCHH
Confidence 999999999999999998999999999999999998765 3322232223345556788999999999999999999998
Q ss_pred Cc
Q 015289 407 NI 408 (409)
Q Consensus 407 ~~ 408 (409)
.|
T Consensus 384 ~l 385 (395)
T cd03323 384 KL 385 (395)
T ss_pred HH
Confidence 76
|
GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. |
| >PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-66 Score=519.58 Aligned_cols=339 Identities=19% Similarity=0.222 Sum_probs=290.3
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHH-HHHHHHHcCCCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA-SEACEVLKESPAM 124 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~-~~~~~~l~g~~~~ 124 (409)
|||++|+++.+ .| .++.++|||+|++|++||||+... +++. .....+ +.++|.|+|+++.
T Consensus 1 mkI~~v~~~~~-----~~---------~~~~vlVri~td~G~~G~GE~~~~----~~~~-~~~~~~~~~l~p~l~G~d~~ 61 (404)
T PRK15072 1 MKIVDAEVIVT-----CP---------GRNFVTLKITTDDGVTGLGDATLN----GREL-AVASYLQDHVCPLLIGRDAH 61 (404)
T ss_pred CeeEEEEEEEE-----CC---------CCcEEEEEEEeCCCCeEEEecccC----CchH-HHHHHHHHHHHHHcCCCChh
Confidence 89999999753 11 135689999999999999998531 2221 122233 3588999999999
Q ss_pred CHHHHHHHHHhhc---CCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHHc
Q 015289 125 ALGSVFGVVAGLL---PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQ 200 (409)
Q Consensus 125 ~~~~~~~~~~~~~---~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~ 200 (409)
+++.+++.+.+.. ++.....+++||||||||++||.+|+|||+||||. ++++++|.+....+++++.+++++++++
T Consensus 62 ~~e~~~~~l~~~~~~~~~~~~~~a~aaID~AlwDl~gK~~g~Pl~~LLGG~~r~~v~~y~~~~~~~~~~~~~~a~~~~~~ 141 (404)
T PRK15072 62 RIEDIWQYLYRGAYWRRGPVTMSAIAAVDMALWDIKAKAAGMPLYQLLGGASREGVMVYGHANGRDIDELLDDVARHLEL 141 (404)
T ss_pred HHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHhhhhcCCcHHHHcCCCccCceEEEEeCCCCCHHHHHHHHHHHHHc
Confidence 9999999997631 23233568999999999999999999999999996 6789999765556788888999999999
Q ss_pred CCCeEEEecCCC-----------------------------------hhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHH
Q 015289 201 GFTTLKLKVGKN-----------------------------------LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQE 244 (409)
Q Consensus 201 Gf~~~KiKvG~~-----------------------------------~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~ 244 (409)
||++||+|+|.+ ++.|+++|++||+. ++++.|++|+|++||+++
T Consensus 142 Gf~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~~G~~~~l~vDaN~~w~~~~ 221 (404)
T PRK15072 142 GYKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNKFGFDLHLLHDVHHRLTPIE 221 (404)
T ss_pred CCCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhhhCCCceEEEECCCCCCHHH
Confidence 999999999721 13457899999997 799999999999999999
Q ss_pred HHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HH
Q 015289 245 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VL 323 (409)
Q Consensus 245 A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~ 323 (409)
|++++++|+++++ .|||||++++|+++|++|++ ++++||++||++++.++++++++.+++|++|+|++++| ++
T Consensus 222 A~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~L~~----~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit 295 (404)
T PRK15072 222 AARLGKSLEPYRL--FWLEDPTPAENQEAFRLIRQ----HTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGIT 295 (404)
T ss_pred HHHHHHhccccCC--cEEECCCCccCHHHHHHHHh----cCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHH
Confidence 9999999999987 49999999999999999974 68899999999999999999999999999999999997 99
Q ss_pred HHHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHHccCCCCceeccccccccccCCCCCCeeeeCcEEecCCCCCcccc
Q 015289 324 GALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGF 402 (409)
Q Consensus 324 ~~~~i~~~A~~~gi~~~~~~~~-es~i~~~~~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~ 402 (409)
++++++++|+++|+++++|++. +|+++.++++|++++++|+.+.|++.+..+.++++.+++.++||++.+|++||||++
T Consensus 296 ~~~kia~lA~~~gi~~~~h~~~~~s~l~~aa~~hlaaa~~~~~~~e~~~~~~~~~~~~~~~~~~~~G~l~vpd~PGLGi~ 375 (404)
T PRK15072 296 HLRRIADFAALYQVRTGSHGPTDLSPVCMAAALHFDLWVPNFGIQEYMGHSEETLEVFPHSYTFEDGYLHPGDAPGLGVD 375 (404)
T ss_pred HHHHHHHHHHHcCCceeeccCcccchHHHHHHHHHHHhccccceeeecccchhhHhhcCCCCeEECCEEECCCCCCCCee
Confidence 9999999999999999999865 699999999999999999888887654334467777788999999999999999999
Q ss_pred cCCCCcC
Q 015289 403 LHWDNIA 409 (409)
Q Consensus 403 ~d~d~~~ 409 (409)
+|+++|+
T Consensus 376 ~d~~~l~ 382 (404)
T PRK15072 376 FDEKLAA 382 (404)
T ss_pred ECHHHHh
Confidence 9998763
|
|
| >cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-65 Score=513.00 Aligned_cols=343 Identities=20% Similarity=0.263 Sum_probs=295.5
Q ss_pred eEeEEEEEEEEecCccceee----ccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCC
Q 015289 47 DVQRAENRPLNVPLIAPFTI----ATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP 122 (409)
Q Consensus 47 kI~~i~~~~~~~pl~~p~~~----a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~ 122 (409)
||++++++.+++|+++|+.+ +.++...++.++|||+|++|++||||+.+. + .... ...+.+.|.|+|++
T Consensus 1 ~I~~i~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~Vri~td~G~~G~G~~~~~--~---~~~~--~~~~~l~p~liG~d 73 (368)
T cd03329 1 KITDVEVTVFEYPTQPVSFDGGHHHPGPAGTRKLALLTIETDEGAKGHAFGGRP--V---TDPA--LVDRFLKKVLIGQD 73 (368)
T ss_pred CeEEEEEEEEEeecCcccccccccCCCCCccceEEEEEEEECCCCeEEEecCCc--h---hHHH--HHHHHHHHhcCCCC
Confidence 69999999999999998766 577888899999999999999999996431 1 1111 12245789999999
Q ss_pred CCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecC-------CCHHHHHHHHH
Q 015289 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI-------VSPAEAAELAS 195 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~-------~~~~~~~~~~~ 195 (409)
+.+++.+|+.+.+.+++.. ..|++||||||||++||.+|+|||+||||.+++||+|++++. .+++++.+.++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~-~~A~said~AlwDl~gk~~g~Pl~~LLGg~~~~v~~y~s~~~~~~~~~~~~~~~~~~~a~ 152 (368)
T cd03329 74 PLDRERLWQDLWRLQRGLT-DRGLGLVDIALWDLAGKYLGLPVHRLLGGYREKIPAYASTMVGDDLEGLESPEAYADFAE 152 (368)
T ss_pred hhHHHHHHHHHHHHhcCcc-hhHHHHHHHHHHHHhhhhcCCcHHHHhhccccceeEEEecCCCcccccCCCHHHHHHHHH
Confidence 9999999999987665532 358999999999999999999999999998889999987632 38889999999
Q ss_pred HHHHcCCCeEEEecCCC--hhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHH
Q 015289 196 KYRKQGFTTLKLKVGKN--LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWE 272 (409)
Q Consensus 196 ~~~~~Gf~~~KiKvG~~--~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~ 272 (409)
+++++||++||+|+|.+ +++|++++++||+. ++++.|++|+|++|+.++|++++++|+++++. |+|||++++|++
T Consensus 153 ~~~~~Gf~~~Kik~~~~~~~~~di~~i~~vR~~~G~~~~l~vDan~~~~~~~A~~~~~~l~~~~l~--~iEeP~~~~d~~ 230 (368)
T cd03329 153 ECKALGYRAIKLHPWGPGVVRRDLKACLAVREAVGPDMRLMHDGAHWYSRADALRLGRALEELGFF--WYEDPLREASIS 230 (368)
T ss_pred HHHHcCCCEEEEecCCchhHHHHHHHHHHHHHHhCCCCeEEEECCCCcCHHHHHHHHHHhhhcCCC--eEeCCCCchhHH
Confidence 99999999999998743 68999999999997 79999999999999999999999999999874 999999999999
Q ss_pred HHHHhHHHhhccCCCeEEeCCCCCC-HHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 015289 273 GLGHVSHIAKDKFGVSVAADESCRS-LDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLA 350 (409)
Q Consensus 273 ~~~~l~~~~~~~~~ipIa~dEs~~~-~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~ 350 (409)
++++|++ ++++||++||++.+ +.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++
T Consensus 231 ~~~~l~~----~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~ia~~a~~~gi~~~~h~~------ 300 (368)
T cd03329 231 SYRWLAE----KLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITGAMKTAHLAEAFGLDVELHGN------ 300 (368)
T ss_pred HHHHHHh----cCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEEEECh------
Confidence 9999874 68899999999999 999999999999999999999997 99999999999999999999985
Q ss_pred HHHHHHHHccCCCCceecc--ccccccccCC-----CCCCeeeeCcEEecCCCCCcccccCCCCcC
Q 015289 351 MGFAGHLSAGLGCFKFIDL--DTPLLLSEDP-----VLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409 (409)
Q Consensus 351 ~~~~~hlaaa~~~~~~~e~--~~p~~~~~d~-----~~~~~~~~~G~i~~p~~PGlG~~~d~d~~~ 409 (409)
.++++|++++++|..+.|. +.|.....++ ..+++..+||++.+|++||||+++|+++|+
T Consensus 301 ~~a~~hlaaa~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~ 366 (368)
T cd03329 301 GAANLHVIAAIRNTRYYERGLLHPSQKYDVYAGYLSVLDDPVDSDGFVHVPKGPGLGVEIDFDYIE 366 (368)
T ss_pred HHHHHHHHhcCCCceeEEEecccccccccccccchhccCCCcCCCCeEECCCCCcCCccCCHHHHh
Confidence 4688999999999888774 3333221111 123445689999999999999999999874
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >PRK14017 galactonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-65 Score=512.38 Aligned_cols=335 Identities=20% Similarity=0.246 Sum_probs=285.4
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (409)
|||++|+++++. + ..++|||+|++|++||||+.... +.+. ....++.+.|.|+|+++.+
T Consensus 1 mkI~~i~~~~~~-----~-----------~~vlV~v~t~dG~~G~GE~~~~~--~~~~---~~~~~~~~~p~l~G~d~~~ 59 (382)
T PRK14017 1 MKITKLETFRVP-----P-----------RWLFLKIETDEGIVGWGEPVVEG--RART---VEAAVHELADYLIGKDPRR 59 (382)
T ss_pred CeEEEEEEEEEC-----C-----------CEEEEEEEECCCCeEEeccccCC--chHH---HHHHHHHHHHHhCCCCHHH
Confidence 899999998762 1 23889999999999999986321 1222 2223456889999999999
Q ss_pred HHHHHHHHHhh--cCCC-hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHHcC
Q 015289 126 LGSVFGVVAGL--LPGH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQG 201 (409)
Q Consensus 126 ~~~~~~~~~~~--~~g~-~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~G 201 (409)
++.+++.+... .++. ....|++||||||||++||.+|+|||+||||+ ++++++|.+++..+++++.+++++++++|
T Consensus 60 ~~~~~~~l~~~~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pv~~LLGg~~r~~i~~~~~~~~~~~~~~~~~a~~~~~~G 139 (382)
T PRK14017 60 IEDHWQVMYRGGFYRGGPILMSAIAGIDQALWDIKGKALGVPVHELLGGLVRDRIRVYSWIGGDRPADVAEAARARVERG 139 (382)
T ss_pred HHHHHHHHHHhcccCCchHHhhHHHHHHHHHHHHhhhhcCCcHHHHcCCCccceeeEeEeCCCCCHHHHHHHHHHHHHcC
Confidence 99999998652 2332 23468999999999999999999999999996 67999998887778999999999999999
Q ss_pred CCeEEEecCC---------ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCH
Q 015289 202 FTTLKLKVGK---------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW 271 (409)
Q Consensus 202 f~~~KiKvG~---------~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~ 271 (409)
|++||+|+|. ++++|+++++++|+. +|++.|++|+|++|+.++|+++++.|+++++. |||||++++|+
T Consensus 140 f~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~--~iEeP~~~~d~ 217 (382)
T PRK14017 140 FTAVKMNGTEELQYIDSPRKVDAAVARVAAVREAVGPEIGIGVDFHGRVHKPMAKVLAKELEPYRPM--FIEEPVLPENA 217 (382)
T ss_pred CCEEEEcCcCCccccccHHHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHhhcccCCC--eEECCCCcCCH
Confidence 9999999863 357899999999997 79999999999999999999999999999874 99999999999
Q ss_pred HHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 015289 272 EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLA 350 (409)
Q Consensus 272 ~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~ 350 (409)
++|++|++ ++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++||+.+ +++
T Consensus 218 ~~~~~L~~----~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~-~i~ 292 (382)
T PRK14017 218 EALPEIAA----QTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCPLG-PIA 292 (382)
T ss_pred HHHHHHHh----cCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCCCC-HHH
Confidence 99999974 68899999999999999999999999999999999998 9999999999999999999999865 899
Q ss_pred HHHHHHHHccCCCCceeccc--ccccccc---CCCC--CCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 351 MGFAGHLSAGLGCFKFIDLD--TPLLLSE---DPVL--DGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 351 ~~~~~hlaaa~~~~~~~e~~--~p~~~~~---d~~~--~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
+++++|++++++++.+.|.. ..+...+ +.+. +++.++||++++|++||||+++|+|+|
T Consensus 293 ~aa~~hl~aa~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~dG~~~vp~~PGLGv~~d~~~l 357 (382)
T PRK14017 293 LAACLQVDAVSPNAFIQEQSLGIHYNQGADLLDYVKNKEVFAYEDGFVAIPTGPGLGIEIDEAKV 357 (382)
T ss_pred HHHHHHHHHhCccceeeeecccccccchhhHHHhcccCCCCcccCCeEECCCCCcCCcCCCHHHH
Confidence 99999999999987655522 1111111 1222 467889999999999999999999876
|
|
| >cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-64 Score=503.37 Aligned_cols=340 Identities=26% Similarity=0.379 Sum_probs=301.9
Q ss_pred eEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHcCCCCCC
Q 015289 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPAMA 125 (409)
Q Consensus 47 kI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~~~ 125 (409)
||++|+++++++|++.| .++...++.++|||+|++|++||||+.+.+. .+. ....+++ ++|.|+|+++.+
T Consensus 1 kI~~i~~~~~~~p~~~~----~~~~~~~~~~~V~v~~~~G~~G~GE~~~~~~--~~~---~~~~l~~~~~p~l~G~~~~~ 71 (357)
T cd03316 1 KITDVETFVLRVPLPEP----GGAVTWRNLVLVRVTTDDGITGWGEAYPGGR--PSA---VAAAIEDLLAPLLIGRDPLD 71 (357)
T ss_pred CeeEEEEEEEecCCccc----ccccccceEEEEEEEeCCCCEEEEeccCCCC--chH---HHHHHHHHHHHHccCCChHH
Confidence 69999999999999998 5566778999999999999999999987532 222 2334454 889999999999
Q ss_pred HHHHHHHHHhhcCCC----hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCC--CHHHHHHHHHHHH
Q 015289 126 LGSVFGVVAGLLPGH----QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIV--SPAEAAELASKYR 198 (409)
Q Consensus 126 ~~~~~~~~~~~~~g~----~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~--~~~~~~~~~~~~~ 198 (409)
++.+++.+.+...++ ....+++|||+||||++||.+|+|+|+||||. ++++|+|.+++.. +++++.+.+++++
T Consensus 72 ~~~~~~~l~~~~~~~~~~~~~~~a~~aid~Al~Dl~gk~~g~pl~~llGg~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~ 151 (357)
T cd03316 72 IERLWEKLYRRLFWRGRGGVAMAAISAVDIALWDIKGKAAGVPVYKLLGGKVRDRVRVYASGGGYDDSPEELAEEAKRAV 151 (357)
T ss_pred HHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHhcccccCCcHhhccCCccCCceeeEEecCCCCCCHHHHHHHHHHHH
Confidence 999999987754332 23568999999999999999999999999998 7899999987665 6899999999999
Q ss_pred HcCCCeEEEecCCC------hhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCH
Q 015289 199 KQGFTTLKLKVGKN------LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW 271 (409)
Q Consensus 199 ~~Gf~~~KiKvG~~------~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~ 271 (409)
++||+.||+|+|.+ ++.|+++++++|+. ++++.|++|+|++|+.++|+++++.|+++++ .|+|||++++|+
T Consensus 152 ~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~~~ 229 (357)
T cd03316 152 AEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYDL--FWFEEPVPPDDL 229 (357)
T ss_pred HcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCccCC--CeEcCCCCccCH
Confidence 99999999999964 68999999999997 7899999999999999999999999999986 499999999999
Q ss_pred HHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 015289 272 EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLA 350 (409)
Q Consensus 272 ~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~ 350 (409)
+++++|++ ++++||++||++++++++.++++.+++|++|+|++++| ++++++++++|+++|+++++||+.+ +++
T Consensus 230 ~~~~~l~~----~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~~~-~i~ 304 (357)
T cd03316 230 EGLARLRQ----ATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGAGG-PIG 304 (357)
T ss_pred HHHHHHHH----hCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccCCCC-HHH
Confidence 99999875 67899999999999999999999999999999999998 9999999999999999999999966 999
Q ss_pred HHHHHHHHccCCCCceecccccc-ccccCCCCCCeeeeCcEEecCCCCCcccc
Q 015289 351 MGFAGHLSAGLGCFKFIDLDTPL-LLSEDPVLDGYEVSGAVYKFTNARGHGGF 402 (409)
Q Consensus 351 ~~~~~hlaaa~~~~~~~e~~~p~-~~~~d~~~~~~~~~~G~i~~p~~PGlG~~ 402 (409)
.++++|++++++++.+.|++.+. .+.++++.+++.++||++.+|++||||++
T Consensus 305 ~aa~~hla~a~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ 357 (357)
T cd03316 305 LAASLHLAAALPNFGILEYHLDDLPLREDLFKNPPEIEDGYVTVPDRPGLGVE 357 (357)
T ss_pred HHHHHHHHHhCcChheEEeecccchhhHhhccCCCeeeCCEEECCCCCCCCCC
Confidence 99999999999999898887653 23456667788999999999999999985
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD). |
| >cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-64 Score=498.24 Aligned_cols=330 Identities=20% Similarity=0.275 Sum_probs=282.9
Q ss_pred eEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCCH
Q 015289 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMAL 126 (409)
Q Consensus 47 kI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~ 126 (409)
||++|+++.+. ++.++|||+|++|++||||+.+.. +.+.. ...++.+.|+++|+++.++
T Consensus 1 ~I~~i~~~~~~----------------~~~~~V~i~~~~G~~G~GE~~~~~--~~~~~---~~~~~~l~p~l~G~d~~~~ 59 (352)
T cd03325 1 KITKIETFVVP----------------PRWLFVKIETDEGVVGWGEPTVEG--KARTV---EAAVQELEDYLIGKDPMNI 59 (352)
T ss_pred CeEEEEEEEEC----------------CCEEEEEEEECCCCEEEeccccCC--cchHH---HHHHHHHHHHhCCCCHHHH
Confidence 68899987652 246899999999999999997521 12222 2234568999999999999
Q ss_pred HHHHHHHHhh--cCCC-hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHHcCC
Q 015289 127 GSVFGVVAGL--LPGH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQGF 202 (409)
Q Consensus 127 ~~~~~~~~~~--~~g~-~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf 202 (409)
+.+++.+... ..++ ....+++||||||||++||.+|+|+|+||||. ++++++|.+++..+++++.+++++++++||
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~a~aaid~Al~Dl~gk~~g~pv~~LLGg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gf 139 (352)
T cd03325 60 EHHWQVMYRGGFYRGGPVLMSAISGIDQALWDIKGKVLGVPVHQLLGGQVRDRVRVYSWIGGDRPSDVAEAARARREAGF 139 (352)
T ss_pred HHHHHHHHHhcCcCCcchhhhHHHHHHHHHHHHhhhhcCCcHHHHcCCCccceeEEEEeCCCCCHHHHHHHHHHHHHcCC
Confidence 9999988543 2332 23468999999999999999999999999995 678999988877889888899999999999
Q ss_pred CeEEEecCC---------ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHH
Q 015289 203 TTLKLKVGK---------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWE 272 (409)
Q Consensus 203 ~~~KiKvG~---------~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~ 272 (409)
++||+|+|. ++++|+++++++|+. +|++.||+|+|++|+.++|+++++.|+++++. |||||++++|++
T Consensus 140 ~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~--~iEeP~~~~d~~ 217 (352)
T cd03325 140 TAVKMNATEELQWIDTSKKVDAAVERVAALREAVGPDIDIGVDFHGRVSKPMAKDLAKELEPYRLL--FIEEPVLPENVE 217 (352)
T ss_pred CEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHhccccCCc--EEECCCCccCHH
Confidence 999999983 467899999999997 79999999999999999999999999999874 999999999999
Q ss_pred HHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHH
Q 015289 273 GLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAM 351 (409)
Q Consensus 273 ~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~ 351 (409)
++++|++ ++++||++||++++++++.++++.+++|++|+|++++| ++++++++++|+++|+++++|++ +|+++.
T Consensus 218 ~~~~L~~----~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~~-~s~i~~ 292 (352)
T cd03325 218 ALAEIAA----RTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGGITELKKIAAMAEAYDVALAPHCP-LGPIAL 292 (352)
T ss_pred HHHHHHH----hCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCcEeccCC-CChHHH
Confidence 9999975 68999999999999999999999999999999999997 99999999999999999999997 899999
Q ss_pred HHHHHHHccCCCCceeccc--ccccccc----CCCC-CCeeeeCcEEecCCCCCcccccC
Q 015289 352 GFAGHLSAGLGCFKFIDLD--TPLLLSE----DPVL-DGYEVSGAVYKFTNARGHGGFLH 404 (409)
Q Consensus 352 ~~~~hlaaa~~~~~~~e~~--~p~~~~~----d~~~-~~~~~~~G~i~~p~~PGlG~~~d 404 (409)
++++|++++++++.+.|+. .++...+ +++. ++++++||++.+|++||||+++|
T Consensus 293 ~a~~hlaa~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~G~l~vp~~pGLGi~~d 352 (352)
T cd03325 293 AASLHVDASTPNFLIQEQSLGIHYNEGDDLLDYLVDPEVFDMENGYVKLPTGPGLGIEID 352 (352)
T ss_pred HHHHHHHHhcccHHhhhcccccCcccchhhhhhhccCCCCeeeCCEEECCCCCccCeeeC
Confidence 9999999999987665432 2222111 1333 57889999999999999999987
|
D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-64 Score=499.70 Aligned_cols=338 Identities=20% Similarity=0.264 Sum_probs=284.1
Q ss_pred EEEEEEEecCccceeeccceeeeeeEEEEEEEECC---C--ceEEEEeccCCccCcccHHHHHHHH-HHHHHHHcCCCCC
Q 015289 51 AENRPLNVPLIAPFTIATSRLDQVENVAIRIELSN---G--CVGWGEAPVLPHVTAEDQQTAMVKA-SEACEVLKESPAM 124 (409)
Q Consensus 51 i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~---G--~~G~GE~~~~~~~~~e~~~~~~~~~-~~~~~~l~g~~~~ 124 (409)
++++.+++|+++||.++.++++.++.++|||+||+ | ++||||+.. ++.... ..+ +.+.|+|+|++|.
T Consensus 3 ~~~~~~~~Pl~~p~~~a~~~~~~~~~~lV~v~td~~~~G~~~~G~Ge~~~-----~~~~~~--~~i~~~~~p~LiG~dp~ 75 (385)
T cd03326 3 VAIREKAIPLSSPIANAYVDFSGLTTSLVAVVTDVVRDGRPVVGYGFDSI-----GRYAQG--GLLRERFIPRLLAAAPD 75 (385)
T ss_pred eeeEEEecCCCCCccCceeeeeccEEEEEEEEeccccCCCceeEEEeccC-----CchhHH--HHHHHHHHHHhcCCChH
Confidence 56778889999999999999999999999999999 9 999999862 112111 113 3478999999998
Q ss_pred ----------CHHHHHHHHHhhc--CCC-hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC------CCeeeeeeeec--
Q 015289 125 ----------ALGSVFGVVAGLL--PGH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV------SNTITTDITIP-- 183 (409)
Q Consensus 125 ----------~~~~~~~~~~~~~--~g~-~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~------~~~i~~~~~i~-- 183 (409)
+++.+|+.|+... .++ ....++|||||||||++||.+|+|||+||||. +++||+|.+.+
T Consensus 76 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~saID~ALwDl~gK~~g~Pv~~LLGG~~~~~~~~~~v~~y~~~~~~ 155 (385)
T cd03326 76 SLLDDAGGNLDPARAWAAMMRNEKPGGHGERAVAVGALDMAVWDAVAKIAGLPLYRLLARRYGRGQADPRVPVYAAGGYY 155 (385)
T ss_pred HhhhcccccCCHHHHHHHHHhcCccCCCCHHHHHHHHHHHHHHHHhHHHcCCcHHHHcCCcccCCCCCCeEEEEEecCCC
Confidence 4499999986631 222 22458999999999999999999999999985 36899998754
Q ss_pred --CCCHHHHHHHHHHHHHcCCCeEEEecCC-ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCC
Q 015289 184 --IVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTP 259 (409)
Q Consensus 184 --~~~~~~~~~~~~~~~~~Gf~~~KiKvG~-~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~ 259 (409)
..+++++.+++++++++||+++|+|+|. +++.|+++++++|+. +|++.|++|+|++||.++|+++++.|+++++.
T Consensus 156 ~~~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~di~~v~avRe~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~- 234 (385)
T cd03326 156 YPGDDLGRLRDEMRRYLDRGYTVVKIKIGGAPLDEDLRRIEAALDVLGDGARLAVDANGRFDLETAIAYAKALAPYGLR- 234 (385)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhCcCCC-
Confidence 3467888899999999999999999984 778999999999997 79999999999999999999999999999874
Q ss_pred ceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCC----CEEEeCCCCCc-HHHHHHHHHHHHH
Q 015289 260 VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA----DVINIKLAKVG-VLGALEIIEVVRA 334 (409)
Q Consensus 260 ~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~----div~~k~~~~G-i~~~~~i~~~A~~ 334 (409)
|||||++++|++++++|++ ++++||++||+++++++++++++.+++ |++|+|++|+| ++++++++++|++
T Consensus 235 -~iEeP~~~~d~~~~~~L~~----~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~d~~~~GGit~~~kia~lA~a 309 (385)
T cd03326 235 -WYEEPGDPLDYALQAELAD----HYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLPEYLRMLDVLEA 309 (385)
T ss_pred -EEECCCCccCHHHHHHHHh----hCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEeCchhhCCHHHHHHHHHHHHH
Confidence 9999999999999999974 688999999999999999999999988 99999999997 9999999999999
Q ss_pred cCCc---EEEccCCchHHHHHHHHHHHccCCCCceeccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 335 SGLN---LMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 335 ~gi~---~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
+|++ +++|+ +..+++|++++.++ .+++....+.-..+.+.++++++||++.+|++||||+++|++.|
T Consensus 310 ~gi~~~~~~pH~------~~~a~lhl~aa~~~-~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGield~~~~ 379 (385)
T cd03326 310 HGWSRRRFFPHG------GHLMSLHIAAGLGL-GGNESYPDVFQPFGGFADGCKVENGYVRLPDAPGIGFEGKAELA 379 (385)
T ss_pred cCCCCceeecch------HHHHHHHHHhcCCC-ceeEEeccccchhhhcCCCCceeCCEEECCCCCCCCcccCHHHH
Confidence 9998 67765 35688999999885 23332111110112334667889999999999999999999875
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >cd03322 rpsA The starvation sensing protein RpsA from E | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-64 Score=498.84 Aligned_cols=331 Identities=18% Similarity=0.203 Sum_probs=283.1
Q ss_pred eEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHH-HHHHHHcCCCCCC
Q 015289 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS-EACEVLKESPAMA 125 (409)
Q Consensus 47 kI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~-~~~~~l~g~~~~~ 125 (409)
||++|+++.. . | + ++.++|||+|++|++||||+.+.. +.+. ....++ .+.|.|+|+++.+
T Consensus 1 kI~~ie~~~~-~----~-----~----~~~vlV~v~td~G~~G~GE~~~~~--~~~~---~~~~i~~~l~p~l~G~d~~~ 61 (361)
T cd03322 1 KITAIEVIVT-C----P-----G----RNFVTLKITTDQGVTGLGDATLNG--RELA---VKAYLREHLKPLLIGRDANR 61 (361)
T ss_pred CeEEEEEEEE-C----C-----C----CCEEEEEEEeCCCCeEEEecccCC--CHHH---HHHHHHHHHHHHcCCCChhH
Confidence 7999999654 2 2 1 256899999999999999985311 1122 223344 4789999999999
Q ss_pred HHHHHHHHHhh--cC-CChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHHcC
Q 015289 126 LGSVFGVVAGL--LP-GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQG 201 (409)
Q Consensus 126 ~~~~~~~~~~~--~~-g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~G 201 (409)
++.+++.+... ++ +.....+++||||||||++||.+|+|||+||||. ++++|+|.+.+..+++++.+++++++++|
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~a~aaid~AlwDl~gk~~g~Pl~~LLGg~~r~~v~~ya~~~~~~~~~~~~~a~~~~~~G 141 (361)
T cd03322 62 IEDIWQYLYRGAYWRRGPVTMNAIAAVDMALWDIKGKAAGMPLYQLLGGKSRDGIMVYSHASGRDIPELLEAVERHLAQG 141 (361)
T ss_pred HHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHhHhhcCCcHHHHcCCCccCeeeEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 99999998653 12 2223458999999999999999999999999996 67899997766667888889999999999
Q ss_pred CCeEEEecCCChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHH
Q 015289 202 FTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 280 (409)
Q Consensus 202 f~~~KiKvG~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~ 280 (409)
|++||+|+ +++++++|+. ++++.|++|+|++||+++|+++++.|+++++. |||||++++|++++++|++
T Consensus 142 f~~~KiKv-------~~~v~avre~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l~--~iEeP~~~~d~~~~~~L~~- 211 (361)
T cd03322 142 YRAIRVQL-------PKLFEAVREKFGFEFHLLHDVHHRLTPNQAARFGKDVEPYRLF--WMEDPTPAENQEAFRLIRQ- 211 (361)
T ss_pred CCeEeeCH-------HHHHHHHHhccCCCceEEEECCCCCCHHHHHHHHHHhhhcCCC--EEECCCCcccHHHHHHHHh-
Confidence 99999998 8899999997 78999999999999999999999999999874 9999999999999999974
Q ss_pred hhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHH
Q 015289 281 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLS 358 (409)
Q Consensus 281 ~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~-es~i~~~~~~hla 358 (409)
++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. +++++.++++|++
T Consensus 212 ---~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~~s~i~~aa~~~la 288 (361)
T cd03322 212 ---HTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPTDLSPVGMAAALHLD 288 (361)
T ss_pred ---cCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCCCcchHHHHHHHHHH
Confidence 68899999999999999999999999999999999998 999999999999999999999987 5999999999999
Q ss_pred ccCCCCceeccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCcC
Q 015289 359 AGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409 (409)
Q Consensus 359 aa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~~ 409 (409)
++++++.+.++.....+..+++.+++.++||++.+|++||||+++|+|+++
T Consensus 289 a~~~~~~~~e~~~~~~~~~~~~~~~~~~~dG~i~~p~~PGlGi~~d~~~l~ 339 (361)
T cd03322 289 LWVPNFGIQEYMRHAEETLEVFPHSVRFEDGYLHPGEEPGLGVEIDEKAAA 339 (361)
T ss_pred hhcCcceEEEeccccchHHHhcCCCCeecCCeEeCCCCCccCceECHHHHh
Confidence 999887666653211223466777889999999999999999999998763
|
coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad. |
| >cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-63 Score=489.24 Aligned_cols=319 Identities=19% Similarity=0.271 Sum_probs=273.2
Q ss_pred eEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHH-HHHHHHHcCCCCCC
Q 015289 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA-SEACEVLKESPAMA 125 (409)
Q Consensus 47 kI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~-~~~~~~l~g~~~~~ 125 (409)
||++|+++. ..++|||+||+|++||||+... . .. ...+ +.+.|.|+|++|.+
T Consensus 1 kI~~i~~~~-------------------~~v~V~i~td~Gi~G~GE~~~~----~-~~---~~~i~~~l~p~liG~dp~~ 53 (341)
T cd03327 1 KIKSVRTRV-------------------GWLFVEIETDDGTVGYANTTGG----P-VA---CWIVDQHLARFLIGKDPSD 53 (341)
T ss_pred CeEEEEEEE-------------------EEEEEEEEECCCCeEEecCCCc----h-HH---HHHHHHHHHHHhCCCCchH
Confidence 789999853 2589999999999999998531 1 11 1223 34789999999999
Q ss_pred HHHHHHHHHhhc---C-CChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeee-cCCCHHHHHHHHHHHHH
Q 015289 126 LGSVFGVVAGLL---P-GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITI-PIVSPAEAAELASKYRK 199 (409)
Q Consensus 126 ~~~~~~~~~~~~---~-g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i-~~~~~~~~~~~~~~~~~ 199 (409)
++.+|+.+++.. . +.....++|||||||||++||.+|+|||+||||+ +++||+|++. ...+++++.++++++++
T Consensus 54 ~~~~~~~l~~~~~~~~~~~~~~~a~said~AlwDl~gK~~g~Pv~~LLGG~~r~~i~~y~~~~~~~~~~~~~~~a~~~~~ 133 (341)
T cd03327 54 IEKLWDQMYRATLAYGRKGIAMAAISAVDLALWDLLGKIRGEPVYKLLGGRTRDKIPAYASGLYPTDLDELPDEAKEYLK 133 (341)
T ss_pred HHHHHHHHHhhccccCCccHHHhHHHHHHHHHHHhcccccCCCHHHHcCCCcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 999999996632 1 1222358999999999999999999999999996 5689999875 35688889999999999
Q ss_pred cCCCeEEEecCC-------ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCH
Q 015289 200 QGFTTLKLKVGK-------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW 271 (409)
Q Consensus 200 ~Gf~~~KiKvG~-------~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~ 271 (409)
+||++||+|+|. ++++|+++++++|+. +|++.|++|+|++|++++|++++++|+++++ .|||||++++|+
T Consensus 134 ~Gf~~~Kikvg~~~~~~~~~~~~d~~~v~avr~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~~--~~iEeP~~~~d~ 211 (341)
T cd03327 134 EGYRGMKMRFGYGPSDGHAGLRKNVELVRAIREAVGYDVDLMLDCYMSWNLNYAIKMARALEKYEL--RWIEEPLIPDDI 211 (341)
T ss_pred cCCCEEEECCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhhcCC--ccccCCCCccCH
Confidence 999999999973 357999999999997 7999999999999999999999999999987 499999999999
Q ss_pred HHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 015289 272 EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLA 350 (409)
Q Consensus 272 ~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~ 350 (409)
++|++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+.
T Consensus 212 ~~~~~l~~----~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h~~------ 281 (341)
T cd03327 212 EGYAELKK----ATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGITELKKIAALAEAYGVPVVPHAS------ 281 (341)
T ss_pred HHHHHHHh----cCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeccccH------
Confidence 99999974 68999999999999999999999999999999999997 99999999999999999999973
Q ss_pred HHHHHHHHccCCCCceecccc--ccc----cccCCCCCCeeeeCcEEecCCCCCcccccC
Q 015289 351 MGFAGHLSAGLGCFKFIDLDT--PLL----LSEDPVLDGYEVSGAVYKFTNARGHGGFLH 404 (409)
Q Consensus 351 ~~~~~hlaaa~~~~~~~e~~~--p~~----~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d 404 (409)
.++++|++++++|+.+.|+.. +.. +.++++.+++.++||++++|++||||+++|
T Consensus 282 ~~a~~hlaaa~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~PGLGve~d 341 (341)
T cd03327 282 QIYNYHFIMSEPNSPFAEYLPNSPDEVGNPLFYYIFLNEPVPVNGYFDLSDKPGFGLELN 341 (341)
T ss_pred HHHHHHHHHhCcCceeEEecccccccccchhHHHhccCCCcccCCeEECCCCCccCeecC
Confidence 458899999999987777532 111 124566677788999999999999999987
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-62 Score=494.14 Aligned_cols=342 Identities=20% Similarity=0.243 Sum_probs=276.7
Q ss_pred eeEeEEEEEEEEecCccceeeccc--eeeeeeEEEEEEEECC-CceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATS--RLDQVENVAIRIELSN-GCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP 122 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~--~~~~~~~~iVrl~td~-G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~ 122 (409)
+||++|+++.+++|++.|+..+.+ +....+.++|||+||+ |++||||+.+.. +........++.++|+++|++
T Consensus 1 ~kI~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~V~i~td~~G~~G~Ge~~~~~----~~~~~~~~~~~~lap~liG~d 76 (415)
T cd03324 1 IKITALEVRDVRFPTSLELDGSDAMNPDPDYSAAYVVLRTDAAGLKGHGLTFTIG----RGNEIVCAAIEALAHLVVGRD 76 (415)
T ss_pred CeEEEEEEEEEEeecCccCCCcccccCCCCceEEEEEEEecCCCCEEEEEeccCC----CchHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999855433 3344578999999999 999999986421 121222222355889999999
Q ss_pred CCCHHHHHHHHHhhcC--------C---ChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCC------------------
Q 015289 123 AMALGSVFGVVAGLLP--------G---HQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVS------------------ 173 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~--------g---~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~------------------ 173 (409)
+.+++.+++.+.+.+. + .....++|||||||||++||.+|+|||+||||..
T Consensus 77 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~saiD~AlwDl~gK~~g~Pv~~LLGg~~~~~~~~~~~~~~~~~~~~ 156 (415)
T cd03324 77 LESIVADMGKFWRRLTSDSQLRWIGPEKGVIHLATAAVVNAVWDLWAKAEGKPLWKLLVDMTPEELVSCIDFRYITDALT 156 (415)
T ss_pred HHHHHHHHHHHHHHhhccccceecCCcccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhcCCCHHHhhhcccceeeccccC
Confidence 9988554444433221 1 1113589999999999999999999999999942
Q ss_pred ------------------------Ceeeeeeee-c--CCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhh
Q 015289 174 ------------------------NTITTDITI-P--IVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV 226 (409)
Q Consensus 174 ------------------------~~i~~~~~i-~--~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~ 226 (409)
+++|+|.+. + ..+++++.+++++++++||++||+|+|.+++.|+++++++|+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~d~~~v~avRe~ 236 (415)
T cd03324 157 PEEALEILRRGQPGKAAREADLLAEGYPAYTTSAGWLGYSDEKLRRLCKEALAQGFTHFKLKVGADLEDDIRRCRLAREV 236 (415)
T ss_pred HHHHHHHhhhcccchhhhhhhhhccCCceeecCCcccCCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 467888542 2 3477889999999999999999999998899999999999997
Q ss_pred -CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccC---CCeEEeCCCCCCHHHHH
Q 015289 227 -HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF---GVSVAADESCRSLDDVK 302 (409)
Q Consensus 227 -~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~---~ipIa~dEs~~~~~~~~ 302 (409)
+|++.|++|+|++|++++|++++++|+++++. |||||++++|+++|++|++ ++ ++||++||++++.++++
T Consensus 237 vG~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~--~iEEP~~~~d~~~~~~L~~----~~~~~~iPIa~gEs~~~~~~~~ 310 (415)
T cd03324 237 IGPDNKLMIDANQRWDVPEAIEWVKQLAEFKPW--WIEEPTSPDDILGHAAIRK----ALAPLPIGVATGEHCQNRVVFK 310 (415)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHhhccCCC--EEECCCCCCcHHHHHHHHH----hcccCCCceecCCccCCHHHHH
Confidence 79999999999999999999999999999874 9999999999999999975 44 69999999999999999
Q ss_pred HHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHcc---------CCCCceeccccc
Q 015289 303 KIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG---------LGCFKFIDLDTP 372 (409)
Q Consensus 303 ~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa---------~~~~~~~e~~~p 372 (409)
++++.+++|++|+|++++| ++++++++++|+++|+++++|+ ++++.++++|.++. .++. ++|+..
T Consensus 311 ~ll~~~a~dil~~d~~~~GGit~~~kia~lA~a~gi~~~pH~---s~~~~~a~~~~~~~~~~~~~~~~~~~~-~~e~~~- 385 (415)
T cd03324 311 QLLQAGAIDVVQIDSCRLGGVNENLAVLLMAAKFGVPVCPHA---GGVGLCELVQHLSMIDYICVSGSKEGR-VIEYVD- 385 (415)
T ss_pred HHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEcC---CHHHHHHHHHHhhcccccccCCccccc-hhhhHH-
Confidence 9999999999999999998 9999999999999999999996 56666666654332 1121 233211
Q ss_pred cccccCCCCCCeeeeCcEEecCCCCCcccccC
Q 015289 373 LLLSEDPVLDGYEVSGAVYKFTNARGHGGFLH 404 (409)
Q Consensus 373 ~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d 404 (409)
+..+++.++++++||++.+|++||||+++.
T Consensus 386 --~~~~~~~~~~~~~dG~l~lp~~PGLGve~~ 415 (415)
T cd03324 386 --HLHEHFVYPVVIQNGAYMPPTDPGYSIEMK 415 (415)
T ss_pred --HHHhhccCCCeeeCCEEECCCCCccCeeeC
Confidence 123455677899999999999999999873
|
rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >TIGR03247 glucar-dehydr glucarate dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-62 Score=493.82 Aligned_cols=348 Identities=18% Similarity=0.231 Sum_probs=286.0
Q ss_pred eeeEeEEEEEEEEecCccceeecccee-eeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCC
Q 015289 45 TVDVQRAENRPLNVPLIAPFTIATSRL-DQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA 123 (409)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~p~~~a~~~~-~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~ 123 (409)
+.-||++++.++..- ..++-...|.. ...+.++|||+||+|++||||+.. .+... ..++.++|.|+|+++
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iV~v~Td~Gi~G~GEa~~-----~~~~~---~~l~~lap~LiG~dp 73 (441)
T TIGR03247 3 TPVVTEMRVIPVAGH-DSMLLNLSGAHAPFFTRNIVILTDSSGNTGVGEVPG-----GEKIR---ATLEDARPLVVGKPL 73 (441)
T ss_pred CCEEeEEEEEeeccc-cchhccccccCCCcceEEEEEEEECCCCeEEEeCCC-----cHHHH---HHHHHHHHHhcCCCH
Confidence 345788888887432 12232322321 257899999999999999999853 22222 223568899999999
Q ss_pred CCHHHHHHHHHhhcC-------CCh------hhHHHHHHHHHHHHHHHhhcCCchHHHhC-CC-CCeeeeeee---ec--
Q 015289 124 MALGSVFGVVAGLLP-------GHQ------FASVRAAVEMALIDAVAKSVSMPLWRLFG-GV-SNTITTDIT---IP-- 183 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~-------g~~------~~~a~said~AlwDl~gk~~g~Pl~~LLG-g~-~~~i~~~~~---i~-- 183 (409)
.+++.+|+.+..... ++. ...|+|||||||||++||.+|+|||+||| |. +++||+|.+ ++
T Consensus 74 ~~~e~i~~~m~~~~~~~~~~~~g~~~~~~~~~~~A~aAIDiALWDl~gK~~g~Pl~~LLGgg~~r~~vp~y~~~~~ig~~ 153 (441)
T TIGR03247 74 GEYQNVLNDVRATFADRDAGGRGLQTFDLRTTIHAVTAIESALLDLLGQHLGVPVAALLGEGQQRDEVEMLGYLFFIGDR 153 (441)
T ss_pred HHHHHHHHHHHHHhhcccccccCcccccchhHHHHHHHHHHHHHHHhhhHcCCCHHHHhCCCCccceEEEeeeeeecccc
Confidence 999999999866431 211 24689999999999999999999999999 63 578998854 11
Q ss_pred ------------------------CCCHHHHHHHHHHHHH-cCCCeEEEecCC-ChhHHHHHHHHHHhhCCCcEEEEeCC
Q 015289 184 ------------------------IVSPAEAAELASKYRK-QGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDAN 237 (409)
Q Consensus 184 ------------------------~~~~~~~~~~~~~~~~-~Gf~~~KiKvG~-~~~~d~~~l~avr~~~~~~~l~vDaN 237 (409)
..+++++.++++++++ +||++||+|+|. +.++|+++++++|++++++.|++|+|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~a~KiKvG~~~~~~Di~~v~avRea~~d~~L~vDAN 233 (441)
T TIGR03247 154 KRTSLPYRSGPQDDDDWFRLRHEEALTPEAVVRLAEAAYDRYGFRDFKLKGGVLRGEEEIEAVTALAKRFPQARITLDPN 233 (441)
T ss_pred ccccccccccccccccccccccccCCCHHHHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHHHHHHhCCCCeEEEECC
Confidence 1367888888888776 599999999995 56899999999999888999999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCceeecCCCCCC----HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEE
Q 015289 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD----WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 313 (409)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d----~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div 313 (409)
++|+.++|++++++|+++ + .|||||++++| ++++++|++ ++++||++||+++++++++++++.+++|++
T Consensus 234 ~~wt~~~Ai~~~~~Le~~-~--~~iEePv~~~d~~~~~~~la~Lr~----~~~iPIa~dEs~~~~~~~~~li~~~avdi~ 306 (441)
T TIGR03247 234 GAWSLDEAIALCKDLKGV-L--AYAEDPCGAEQGYSGREVMAEFRR----ATGLPTATNMIATDWRQMGHALQLQAVDIP 306 (441)
T ss_pred CCCCHHHHHHHHHHhhhh-h--ceEeCCCCcccccchHHHHHHHHH----hCCCCEEcCCccCCHHHHHHHHHhCCCCEE
Confidence 999999999999999998 6 49999999998 899999874 789999999999999999999999999999
Q ss_pred EeCCCCCcHHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceeccccccccc--cCCCCCCeeeeCcEE
Q 015289 314 NIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLS--EDPVLDGYEVSGAVY 391 (409)
Q Consensus 314 ~~k~~~~Gi~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~p~~~~--~d~~~~~~~~~~G~i 391 (409)
|+|+.++|++++++++++|+++|+++++|++.+++++.++++|+++++++.. .+++.++.+. ++++.++++++||++
T Consensus 307 ~~d~~~gGIt~~~kIa~lA~a~Gi~v~~h~~~~~~i~~aa~~hlaaa~p~~~-~~~d~~~~~~~~~~l~~~p~~~~dG~i 385 (441)
T TIGR03247 307 LADPHFWTMQGSVRVAQMCHDWGLTWGSHSNNHFDISLAMFTHVAAAAPGKI-TAIDTHWIWQDGQRLTKEPLEIKGGKI 385 (441)
T ss_pred eccCCcchHHHHHHHHHHHHHcCCEEEEeCCccCHHHHHHHHHHHHhCCCCc-cccCcchhhhcccccccCCceeECCEE
Confidence 9999766799999999999999999999998788999999999999988632 3445443322 356677788999999
Q ss_pred ecCCCCCcccccCCCCcC
Q 015289 392 KFTNARGHGGFLHWDNIA 409 (409)
Q Consensus 392 ~~p~~PGlG~~~d~d~~~ 409 (409)
.+|++||||+++|+++|+
T Consensus 386 ~vp~~PGLGve~d~~~l~ 403 (441)
T TIGR03247 386 QVPDKPGLGVEIDMDAVD 403 (441)
T ss_pred ecCCCCCCCceeCHHHHH
Confidence 999999999999998763
|
Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized. |
| >COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-62 Score=487.65 Aligned_cols=349 Identities=28% Similarity=0.398 Sum_probs=295.7
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (409)
|+|.+|+.+++.+|+..||.++.++.+.+..++|+|+|++|++||||+.+...... .... .. ..+.+.++|+++.+
T Consensus 1 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~v~i~~d~G~~G~GE~~~~~~~~~-~~~~-~~--~~~~~~l~g~d~~~ 76 (372)
T COG4948 1 MKIMKITVIPVAVPLSPPFVTSGGTVRFFTRVIVEITTDDGIVGWGEAVPGGRARY-GEEA-EA--VLLAPLLIGRDPFD 76 (372)
T ss_pred CCceeEEEEEeeeecCCcccccccccccceEEEEEEEECCCceeeccccCcccccc-hhhh-hH--HHHHHHhcCCCHHH
Confidence 67888999999999999999998888889999999999999999999997532211 1111 11 14678999999999
Q ss_pred HHHHHHHHHhhcC---CChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCC-CeeeeeeeecC--CCHHHHHHHHHHHHH
Q 015289 126 LGSVFGVVAGLLP---GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVS-NTITTDITIPI--VSPAEAAELASKYRK 199 (409)
Q Consensus 126 ~~~~~~~~~~~~~---g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~-~~i~~~~~i~~--~~~~~~~~~~~~~~~ 199 (409)
++.+|+.++.... ++....+++|||+||||+.||.+|+|||+||||.. +.+++|.+... .+++...+.++.+.+
T Consensus 77 i~~~~~~~~~~~~~~~~~~~~~a~sAvd~ALwDl~gK~~g~Pv~~LLGg~~r~~v~~y~~~~~~~~~~e~~~~~~~~~~~ 156 (372)
T COG4948 77 IERIWQKLYRAGFARRGGITMAAISAVDIALWDLAGKALGVPVYKLLGGKVRDEVRAYASGGGGEDPEEMAAEAARALVE 156 (372)
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHhHcCCcHHHHcCCceeeeEEEEEecCCCCCCHHHHHHHHHHHHh
Confidence 9999998876432 22234699999999999999999999999999986 48888888765 255556666677777
Q ss_pred cCCCeEEEecCC-ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHh
Q 015289 200 QGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 277 (409)
Q Consensus 200 ~Gf~~~KiKvG~-~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l 277 (409)
+||+.+|+|+|. +.+.|+++++++|++ ++++.|++|+|++||+++|++++++|+++++ .|||||++++|++++++|
T Consensus 157 ~G~~~~Klk~g~~~~~~d~~~v~avRe~~g~~~~l~iDan~~~~~~~A~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~l 234 (372)
T COG4948 157 LGFKALKLKVGVGDGDEDLERVRALREAVGDDVRLMVDANGGWTLEEAIRLARALEEYGL--EWIEEPLPPDDLEGLREL 234 (372)
T ss_pred cCCceEEecCCCCchHHHHHHHHHHHHHhCCCceEEEeCCCCcCHHHHHHHHHHhcccCc--ceEECCCCccCHHHHHHH
Confidence 999999999994 456999999999998 5699999999999999999999999999986 599999999999999999
Q ss_pred HHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHH
Q 015289 278 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 356 (409)
Q Consensus 278 ~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~h 356 (409)
++ .+.+|||+||++++..+++++++.+++|++|+|++++| ++++++++++|+.+++.+.+|. +++++.++++|
T Consensus 235 ~~----~~~~PIa~gEs~~~~~~~~~l~~~~a~div~~d~~~~GGite~~kia~~A~~~~~~v~~h~--~~~i~~aa~~h 308 (372)
T COG4948 235 RA----ATSTPIAAGESVYTRWDFRRLLEAGAVDIVQPDLARVGGITEALKIAALAEGFGVMVGPHV--EGPISLAAALH 308 (372)
T ss_pred Hh----cCCCCEecCcccccHHHHHHHHHcCCCCeecCCccccCCHHHHHHHHHHHHHhCCceeccC--chHHHHHHHHH
Confidence 74 45699999999999999999999999999999999998 9999999999998888777766 59999999999
Q ss_pred HHccCCCCceecccccccccc-----CCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 357 LSAGLGCFKFIDLDTPLLLSE-----DPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 357 laaa~~~~~~~e~~~p~~~~~-----d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
++++.++ +.++++++.+.. +++.+++..+||++.+|++||||+++|++.+
T Consensus 309 la~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~PGlGv~~~~~~~ 363 (372)
T COG4948 309 LAAALPN--FGDLEGPLALADDDWYDDLVEEPLIVRGGLVHVPDGPGLGVELDEDAL 363 (372)
T ss_pred Hhhccch--hhhccccccccccchhhhhccCCccccCCeEeCCCCCCCCccccHHHH
Confidence 9998865 344555544433 3577777889999999999999999998864
|
|
| >TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=469.13 Aligned_cols=317 Identities=23% Similarity=0.317 Sum_probs=279.4
Q ss_pred EEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccC--CccCcccHHHHHHHHHH-HHHHHcCCCCCCHHHHH
Q 015289 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKESPAMALGSVF 130 (409)
Q Consensus 54 ~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~~~~~~~~~~ 130 (409)
|++++|++.||.++.+++++++.++|||+|++|++||||+.+. |.+++++...+...+++ +.|.++| ++.+++.++
T Consensus 1 ~~~~lp~~~p~~~a~~~~~~~~~~lV~v~~~~G~~G~GE~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~g-~~~~~~~~~ 79 (324)
T TIGR01928 1 YHVSEPFKSPFKTSKGTLNHRDCLIIELIDDKGNAGFGEVVAFQTPWYTHETIATVKHIIEDFFEPNINK-EFEHPSEAL 79 (324)
T ss_pred CeecccCcCCEEcCCeeEecCcEEEEEEEECCCCeEEEeccccCCCCcCcccHHHHHHHHHHHHHHHhcC-CCCCHHHHH
Confidence 4678999999999999999999999999999999999999854 56777776655555555 5789999 999999999
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecC
Q 015289 131 GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG 210 (409)
Q Consensus 131 ~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG 210 (409)
+.+.. ..++ +.+++||||||||++||..|+|+|+||||.++++|+|.+++..+++++.+++++++++||++||+|++
T Consensus 80 ~~~~~-~~~~--~~a~said~AlwDl~gk~~g~Pl~~llGg~~~~i~~y~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~ 156 (324)
T TIGR01928 80 ELVRS-LKGT--PMAKAGLEMALWDMYHKLPSFSLAYGQGKLRDKAPAGAVSGLANDEQMLKQIESLKATGYKRIKLKIT 156 (324)
T ss_pred HHHHH-ccCC--cHHHHHHHHHHHHHHHhhhCCcHHHHhCCCCCeEEEeEEcCCCCHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 88865 3443 35799999999999999999999999999888999999998889999999999999999999999996
Q ss_pred CChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEE
Q 015289 211 KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVA 290 (409)
Q Consensus 211 ~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa 290 (409)
. +.|+++++++|+.+|++.|++|+|++|+.+++ ++++.|+++++ .|||||++++|++++++|++ ++++||+
T Consensus 157 ~--~~d~~~v~~vr~~~~~~~l~vDaN~~~~~~~a-~~~~~l~~~~~--~~iEeP~~~~~~~~~~~l~~----~~~~pia 227 (324)
T TIGR01928 157 P--QIMHQLVKLRRLRFPQIPLVIDANESYDLQDF-PRLKELDRYQL--LYIEEPFKIDDLSMLDELAK----GTITPIC 227 (324)
T ss_pred C--chhHHHHHHHHHhCCCCcEEEECCCCCCHHHH-HHHHHHhhCCC--cEEECCCChhHHHHHHHHHh----hcCCCEe
Confidence 4 67999999999988899999999999999986 67899999987 49999999999999999975 6889999
Q ss_pred eCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecc
Q 015289 291 ADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDL 369 (409)
Q Consensus 291 ~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~ 369 (409)
+||++++.++++++++.+++|++|+|++++| ++++++++++|+++|+++++||+++|+|+.++++|+|++.++....|.
T Consensus 228 ~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~es~i~~aa~~hla~~~~~~~~~~~ 307 (324)
T TIGR01928 228 LDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGMLETGISRAFNVALASLGGNDYPGDV 307 (324)
T ss_pred eCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcceEcccHHHHHHHHHHhCCCCCCCCCC
Confidence 9999999999999999999999999999998 999999999999999999999999999999999999988765433344
Q ss_pred c-cccccccCCCCCC
Q 015289 370 D-TPLLLSEDPVLDG 383 (409)
Q Consensus 370 ~-~p~~~~~d~~~~~ 383 (409)
. +..++..|+..++
T Consensus 308 ~~~~~~~~~d~~~~~ 322 (324)
T TIGR01928 308 SPSGYYFDQDIVAPS 322 (324)
T ss_pred CCccccccccccCCC
Confidence 3 3344556665554
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase. |
| >PRK15440 L-rhamnonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-60 Score=473.40 Aligned_cols=310 Identities=17% Similarity=0.241 Sum_probs=255.6
Q ss_pred eeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHH-HHHHHHHcCCCCCCHHHHHHHHHhhc--CCC--hhhHHH
Q 015289 72 DQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA-SEACEVLKESPAMALGSVFGVVAGLL--PGH--QFASVR 146 (409)
Q Consensus 72 ~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~--~g~--~~~~a~ 146 (409)
+.++.++|||+||+|++||||+.. ++.. . ..+ +.+.|.|+|+++.+++.+|+.|++.. .++ ....|+
T Consensus 54 ~~~~~vlVrI~td~G~~G~Ge~~~-----~~~~--~-~~v~~~l~p~LiG~dp~~~e~l~~~m~~~~~~~g~~g~~~~A~ 125 (394)
T PRK15440 54 NVLGTLVVEVEAENGQVGFAVSTA-----GEMG--A-FIVEKHLNRFIEGKCVSDIELIWDQMLNATLYYGRKGLVMNTI 125 (394)
T ss_pred eccceEEEEEEECCCCEEEEeCCC-----cHHH--H-HHHHHHHHHHcCCCChhhHHHHHHHHHhhccccCCccHhhhHH
Confidence 456789999999999999999643 1221 1 123 34789999999999999999997642 222 223589
Q ss_pred HHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecC--C-----ChhHHHH
Q 015289 147 AAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG--K-----NLKEDIE 218 (409)
Q Consensus 147 said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG--~-----~~~~d~~ 218 (409)
||||+|||||+||.+|+|||+||||. +++||+|.+.. .++ . .+++||+++|+|++ + ++++|++
T Consensus 126 saIDiALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~--~~~----~---a~~~Gf~~~Kik~~~g~~~g~~~~~~di~ 196 (394)
T PRK15440 126 SCVDLALWDLLGKVRGLPVYKLLGGAVRDELQFYATGA--RPD----L---AKEMGFIGGKMPLHHGPADGDAGLRKNAA 196 (394)
T ss_pred HHHHHHHHHHhhhHcCCcHHHHcCCCCCCeeEEEecCC--ChH----H---HHhCCCCEEEEcCCcCcccchHHHHHHHH
Confidence 99999999999999999999999996 67999997532 222 1 23589999999984 2 4589999
Q ss_pred HHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCC
Q 015289 219 VLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRS 297 (409)
Q Consensus 219 ~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~ 297 (409)
+|+++|++ ++++.||+|+|++||+++|++++++|+++++. |||||++++|+++|++|++. -.+++||+.||++++
T Consensus 197 ~v~avReavG~d~~l~vDaN~~~~~~~Ai~~~~~le~~~l~--wiEEPl~~~d~~~~~~L~~~--~~~~i~ia~gE~~~~ 272 (394)
T PRK15440 197 MVADMREKVGDDFWLMLDCWMSLDVNYATKLAHACAPYGLK--WIEECLPPDDYWGYRELKRN--APAGMMVTSGEHEAT 272 (394)
T ss_pred HHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCc--ceeCCCCcccHHHHHHHHHh--CCCCCceecCCCccC
Confidence 99999997 89999999999999999999999999999874 99999999999999999752 123489999999999
Q ss_pred HHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecccc--cc-
Q 015289 298 LDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDT--PL- 373 (409)
Q Consensus 298 ~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~--p~- 373 (409)
+++++++++.+++|++|+|++++| ++++++++++|+++|+++++|+. ..+++|++++.+|+.+.|+.. |.
T Consensus 273 ~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH~~------~~~~~hl~aa~~n~~~~E~~~~~~~~ 346 (394)
T PRK15440 273 LQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPHGS------SVYSHHFVITRTNSPFSEFLMMSPDA 346 (394)
T ss_pred HHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeecccCH------HHHHHHHHhhCcCceeEEecccCccc
Confidence 999999999999999999999997 99999999999999999999862 357889999999988888521 11
Q ss_pred ----ccccCCCCCCeeeeCcEEecC--CCCCcccccCCCCc
Q 015289 374 ----LLSEDPVLDGYEVSGAVYKFT--NARGHGGFLHWDNI 408 (409)
Q Consensus 374 ----~~~~d~~~~~~~~~~G~i~~p--~~PGlG~~~d~d~~ 408 (409)
...++.+.+.+.++||++.+| ++||||+++|++++
T Consensus 347 ~~~~~~~~~~~~~~~~~~~G~l~vp~~~~PGlGveld~~~~ 387 (394)
T PRK15440 347 DTVVPQFDPILLDEPVPVNGRIHKSVLDKPGFGVELNRDCN 387 (394)
T ss_pred cccccchhhhhcCCCeeeCCEEECCCCCCCccCcccCHHHH
Confidence 111122223467889999999 99999999999864
|
|
| >PRK15129 L-Ala-D/L-Glu epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-59 Score=457.66 Aligned_cols=316 Identities=29% Similarity=0.402 Sum_probs=276.2
Q ss_pred EEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCCHHHH
Q 015289 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSV 129 (409)
Q Consensus 50 ~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~ 129 (409)
+|+++++++|++.||.++.++.+.++.++|||+ ++|.+||||+.+.+.++ |+.+.+...+..++|.++ . ..+.+.+
T Consensus 3 ~i~~~~~~lpl~~p~~~a~g~~~~~~~~lv~l~-~~G~~G~GE~~p~~~~~-~~~~~~~~~l~~~~~~l~-~-~~~~~~~ 78 (321)
T PRK15129 3 TVKVYEEAWPLHTPFVIARGSRSEARVVVVELE-EEGIKGTGECTPYPRYG-ESDASVMAQIMSVVPQLE-K-GLTREAL 78 (321)
T ss_pred eEEEEEEEeeccCCEEccCceEEeeeEEEEEEE-eCCeEEEEeeCCcCCCC-CCHHHHHHHHHHHHHHHh-C-CCCHHHH
Confidence 799999999999999999999999999999998 68999999999887664 777766666667888886 2 1222222
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEe
Q 015289 130 FGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLK 208 (409)
Q Consensus 130 ~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiK 208 (409)
.+ .+ ++ +.+++||||||||++||..|+|+|+||||. ++++++|.+++..+++++.+++++++++||++||+|
T Consensus 79 ~~----~~-~~--~~a~~aid~AlwDl~gk~~~~pl~~llGg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KlK 151 (321)
T PRK15129 79 QK----LL-PA--GAARNAVDCALWDLAARQQQQSLAQLIGITLPETVTTAQTVVIGTPEQMANSASALWQAGAKLLKVK 151 (321)
T ss_pred Hh----hc-cC--hHHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCceeEEEEecCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 21 12 22 458999999999999999999999999996 568999999988899999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCe
Q 015289 209 VGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288 (409)
Q Consensus 209 vG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ip 288 (409)
+|. +.|+++++++|+..+++.|++|||++|+.++|+++++.++++++ .|||||++++|+++++++ ++++|
T Consensus 152 v~~--~~d~~~v~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i--~~iEqP~~~~~~~~l~~~------~~~~p 221 (321)
T PRK15129 152 LDN--HLISERMVAIRSAVPDATLIVDANESWRAEGLAARCQLLADLGV--AMLEQPLPAQDDAALENF------IHPLP 221 (321)
T ss_pred CCC--chHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCc--eEEECCCCCCcHHHHHHh------ccCCC
Confidence 975 46899999999987799999999999999999999999999987 499999999999888764 35799
Q ss_pred EEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCcee
Q 015289 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI 367 (409)
Q Consensus 289 Ia~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~ 367 (409)
|++|||++++.++.++. +++|++|+|++++| ++++++++++|+++|+++++|||+||+++.++++|+ .+++.+.
T Consensus 222 ia~dEs~~~~~d~~~~~--~~~d~v~~k~~~~GGi~~a~~i~~~a~~~gi~~~~g~~~es~i~~~a~~~l---~~~~~~~ 296 (321)
T PRK15129 222 ICADESCHTRSSLKALK--GRYEMVNIKLDKTGGLTEALALATEARAQGFALMLGCMLCTSRAISAALPL---VPQVRFA 296 (321)
T ss_pred EecCCCCCCHHHHHHHH--hhCCEEEeCchhhCCHHHHHHHHHHHHHcCCcEEEecchHHHHHHHHHHHH---hcCCcEe
Confidence 99999999999999984 78999999999998 999999999999999999999999999999999999 3667788
Q ss_pred ccccccccccCCCCCCeeeeCcEEe
Q 015289 368 DLDTPLLLSEDPVLDGYEVSGAVYK 392 (409)
Q Consensus 368 e~~~p~~~~~d~~~~~~~~~~G~i~ 392 (409)
|+++++.+.+|+. +++.+++|+++
T Consensus 297 dl~~~~~~~~d~~-~~~~~~~G~~~ 320 (321)
T PRK15129 297 DLDGPTWLAVDVE-PALQFTTGELH 320 (321)
T ss_pred cCCCchhhcccCC-CCeEEeCCEEe
Confidence 9998887878874 56889999875
|
|
| >cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-58 Score=453.13 Aligned_cols=310 Identities=42% Similarity=0.660 Sum_probs=280.0
Q ss_pred EEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCCHHHHH
Q 015289 51 AENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVF 130 (409)
Q Consensus 51 i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (409)
|+++++++|++.|+.++.++...++.++|||+|+ |++||||+.+.+++++++.......++.+.|.++|+++. ++.++
T Consensus 2 i~~~~~~~p~~~p~~~~~~~~~~~~~~~v~v~t~-G~~G~GE~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~-~~~~~ 79 (316)
T cd03319 2 ISLRPERLPLKRPFTIARGSRTEAENVIVEIELD-GITGYGEAAPTPRVTGETVESVLAALKSVRPALIGGDPR-LEKLL 79 (316)
T ss_pred eEEEEEEeeccccEEeeCceEEeeeEEEEEEEEC-CEEEEEeecCCCCCCCCCHHHHHHHHHHHHHHhcCCCch-HHHHH
Confidence 7889999999999999999999999999999999 999999999877666776665555566679999999999 99999
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHh-CCCCCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEec
Q 015289 131 GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLF-GGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV 209 (409)
Q Consensus 131 ~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LL-Gg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKv 209 (409)
+.+.+...++ +.+++||||||||++||..|+|+|+|| |+.++++++|++++..+++++.+.+++++++||+.||+|+
T Consensus 80 ~~l~~~~~~~--~~a~~aid~AlwDl~gk~~g~pv~~ll~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik~ 157 (316)
T cd03319 80 EALQELLPGN--GAARAAVDIALWDLEAKLLGLPLYQLWGGGAPRPLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKL 157 (316)
T ss_pred HHHHHhccCC--hHHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCCceeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 9987755432 458999999999999999999999995 5556789999888888899999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeE
Q 015289 210 GKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSV 289 (409)
Q Consensus 210 G~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipI 289 (409)
|.+++.|+++++++|+..+++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|++ .+++||
T Consensus 158 g~~~~~d~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~L~~----~~~ipI 231 (316)
T cd03319 158 GGDLEDDIERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGV--ELIEQPVPAGDDDGLAYLRD----KSPLPI 231 (316)
T ss_pred CCChhhHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCC--CEEECCCCCCCHHHHHHHHh----cCCCCE
Confidence 988899999999999973399999999999999999999999999987 49999999999999999874 688999
Q ss_pred EeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceec
Q 015289 290 AADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFID 368 (409)
Q Consensus 290 a~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e 368 (409)
++||++++.++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++++++++.++++|+++++ ..+.+
T Consensus 232 a~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~~~i~~~a~~hl~a~~--~~~~~ 309 (316)
T cd03319 232 MADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMVESSLSIAAAAHLAAAK--ADFVD 309 (316)
T ss_pred EEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECchhhHHHHHHHHHHHhhc--CcEEe
Confidence 99999999999999999999999999999997 9999999999999999999999999999999999999987 44555
Q ss_pred cccc
Q 015289 369 LDTP 372 (409)
Q Consensus 369 ~~~p 372 (409)
++.+
T Consensus 310 ~~~~ 313 (316)
T cd03319 310 LDGP 313 (316)
T ss_pred ccCc
Confidence 5443
|
The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-56 Score=425.43 Aligned_cols=256 Identities=35% Similarity=0.565 Sum_probs=243.6
Q ss_pred EEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCCHHHHH
Q 015289 51 AENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVF 130 (409)
Q Consensus 51 i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (409)
|+++++++|+++||.++.++.+.++.++|||+|++|.+||||+.
T Consensus 1 i~~~~~~lpl~~~~~~~~~~~~~~~~~~v~l~~~~G~~G~GE~~------------------------------------ 44 (265)
T cd03315 1 VEAIPVRLPLKRPLKWASGTLTTADHVLLRLHTDDGLVGWAEAT------------------------------------ 44 (265)
T ss_pred CEEEEEeecccCceEecceeEeccceEEEEEEECCCCEEEeccH------------------------------------
Confidence 57899999999999999999999999999999999999999975
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecC
Q 015289 131 GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG 210 (409)
Q Consensus 131 ~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG 210 (409)
++|||+||||+.||.+|+|+|+|+|+.++++|+|++++..+++++.+++++++++||++||+|+|
T Consensus 45 ---------------~~aid~Al~Dl~gk~~g~pv~~llG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg 109 (265)
T cd03315 45 ---------------KAAVDMALWDLWGKRLGVPVYLLLGGYRDRVRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVG 109 (265)
T ss_pred ---------------HHHHHHHHHHHHHHHcCCcHHHHcCCCCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEecC
Confidence 68999999999999999999999999888999999988888999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeE
Q 015289 211 KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSV 289 (409)
Q Consensus 211 ~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipI 289 (409)
.++++|++++++||+. ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|++ ++++||
T Consensus 110 ~~~~~d~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~ipi 183 (265)
T cd03315 110 RDPARDVAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGL--DYVEQPLPADDLEGRAALAR----ATDTPI 183 (265)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhcCC--CEEECCCCcccHHHHHHHHh----hCCCCE
Confidence 8888999999999998 6899999999999999999999999999987 49999999999999999875 689999
Q ss_pred EeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCC
Q 015289 290 AADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGC 363 (409)
Q Consensus 290 a~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~ 363 (409)
++||++.++.++.++++.+++|++|+|++++| ++++++++++|+++|+++++||+++|+++.++++|+|++++.
T Consensus 184 a~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s~i~~~a~~hlaa~~~~ 258 (265)
T cd03315 184 MADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIESGLGTLANAHLAAALRA 258 (265)
T ss_pred EECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHHHHHHHHcCCcEEecCccchHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999998 999999999999999999999999999999999999998874
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions. |
| >TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-53 Score=413.83 Aligned_cols=290 Identities=24% Similarity=0.311 Sum_probs=250.4
Q ss_pred EEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 015289 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV 133 (409)
Q Consensus 54 ~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 133 (409)
|++++|++.||+++.++.+.++.++|||+ ++|.+||||+.|.|.|++|+...+...++.+.|.+.++++.++..
T Consensus 1 ~~~~lpl~~p~~~a~g~~~~~~~~iv~l~-~~G~~G~GE~~p~~~~~~et~~~~~~~l~~l~~~l~~~~~~~~~~----- 74 (307)
T TIGR01927 1 YRYQMPFDAPVVTRHGLLARREGLIVRLT-DEGRTGWGEIAPLPGFGTETLAEALDFCRALIEEITRGDIEAIDD----- 74 (307)
T ss_pred CcEeccCCCCcCcCceeEEeeeEEEEEEE-ECCcEEEEEeecCCCCCcccHHHHHHHHHHHHHHhcccchhhccc-----
Confidence 46889999999999999999999999999 569999999999999999998888777777888888776543321
Q ss_pred HhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCC-C
Q 015289 134 AGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-N 212 (409)
Q Consensus 134 ~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~-~ 212 (409)
..+++++|||+||||+.||. +.|. ...+...+++..+++++..++.+ ++||++||+|+|. +
T Consensus 75 -------~~~~~~~aie~Al~Dl~~k~-~~~~--------~~~~~~~~l~~~~~~~~~~~~~~--~~Gf~~~KiKvG~~~ 136 (307)
T TIGR01927 75 -------QLPSVAFGFESALIELESGD-ELPP--------ASNYYVALLPAGDPALLLLRSAK--AEGFRTFKWKVGVGE 136 (307)
T ss_pred -------cCcHHHHHHHHHHHHHhcCC-CCCc--------ccccceeeccCCCHHHHHHHHHH--hCCCCEEEEEeCCCC
Confidence 12357999999999999997 2221 12223346667788887776665 7899999999995 7
Q ss_pred hhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHh---CCCCCceeecCCCCCCHHHHHHhHHHhhccCCCe
Q 015289 213 LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE---MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288 (409)
Q Consensus 213 ~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~---~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ip 288 (409)
++.|+++|++||+. ++++.|++|+|++|+.++|++++++|++ +++ .|||||++.+ +++++|++ ++++|
T Consensus 137 ~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i--~~iEqP~~~~--~~~~~l~~----~~~~P 208 (307)
T TIGR01927 137 LAREGMLVNLLLEALPDKAELRLDANGGLSPDEAQQFLKALDPNLRGRI--AFLEEPLPDA--DEMSAFSE----ATGTA 208 (307)
T ss_pred hHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhcccccCCCc--eEEeCCCCCH--HHHHHHHH----hCCCC
Confidence 88999999999997 6789999999999999999999999997 776 5999999866 78888864 68899
Q ss_pred EEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCcee
Q 015289 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI 367 (409)
Q Consensus 289 Ia~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~ 367 (409)
|++||++.+.+++.++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||++++++++|+++++++....
T Consensus 209 ia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es~i~~aa~~hlaa~~~~~~~~ 288 (307)
T TIGR01927 209 IALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESSIALGQLARLAAKLSPDPAA 288 (307)
T ss_pred EEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccchHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999999999999999998 9999999999999999999999999999999999999999888777
Q ss_pred cccccccc
Q 015289 368 DLDTPLLL 375 (409)
Q Consensus 368 e~~~p~~~ 375 (409)
.++++..+
T Consensus 289 ~~~~~~~~ 296 (307)
T TIGR01927 289 VGFTTALL 296 (307)
T ss_pred CCccHHHh
Confidence 77776544
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error. |
| >cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-53 Score=407.25 Aligned_cols=250 Identities=32% Similarity=0.466 Sum_probs=231.0
Q ss_pred EEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 015289 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFG 131 (409)
Q Consensus 52 ~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 131 (409)
+++++++|+++||.++.+++..++.++|||+|++|.+||||+.+.+
T Consensus 2 ~~~~~~lpl~~~~~~~~~~~~~~~~~~v~l~~~~G~~G~GE~~p~~---------------------------------- 47 (263)
T cd03320 2 RLYPYSLPLSRPLGTSRGRLTRRRGLLLRLEDLTGPVGWGEIAPLP---------------------------------- 47 (263)
T ss_pred ccEEEEeecCCcccccCceEEEEeEEEEEEecCCCCeeEEeccchH----------------------------------
Confidence 5678999999999999999999999999999999999999998631
Q ss_pred HHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecC
Q 015289 132 VVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG 210 (409)
Q Consensus 132 ~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG 210 (409)
+++||||||||+.||..| ||. +++||+|.+++..++ +..+.+++++++||++||+|+|
T Consensus 48 -------------a~aaid~AlwDl~gk~~g-------gg~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~Gf~~~KiKvg 106 (263)
T cd03320 48 -------------LAFGIESALANLEALLVG-------FTRPRNRIPVNALLPAGDA-AALGEAKAAYGGGYRTVKLKVG 106 (263)
T ss_pred -------------HHHHHHHHHhcccccccC-------CCCCccCcceeEEecCCCH-HHHHHHHHHHhCCCCEEEEEEC
Confidence 589999999999999999 665 678999999888777 5557788888999999999998
Q ss_pred C-ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCe
Q 015289 211 K-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288 (409)
Q Consensus 211 ~-~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ip 288 (409)
. ++++|+++++++|+. ++++.|++|+|++|+.++|+++++.|+++++. |||||++++|++++++++ +++|
T Consensus 107 ~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i~--~iEqP~~~~d~~~~~~l~------~~~P 178 (263)
T cd03320 107 ATSFEEDLARLRALREALPADAKLRLDANGGWSLEEALAFLEALAAGRIE--YIEQPLPPDDLAELRRLA------AGVP 178 (263)
T ss_pred CCChHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhhcccCCc--eEECCCChHHHHHHHHhh------cCCC
Confidence 5 578999999999998 67999999999999999999999999999874 999999999999998873 6799
Q ss_pred EEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCC
Q 015289 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCF 364 (409)
Q Consensus 289 Ia~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~ 364 (409)
|++||++++++++.++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||+++.++++|+++++|+.
T Consensus 179 Ia~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~es~ig~aa~~hlaa~~~~~ 255 (263)
T cd03320 179 IALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARGIPAVVSSALESSIGLGALAHLAAALPPL 255 (263)
T ss_pred eeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCCEEEEcchhhHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999998 9999999999999999999999999999999999999999873
|
Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK05105 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-51 Score=403.52 Aligned_cols=296 Identities=22% Similarity=0.238 Sum_probs=251.1
Q ss_pred eEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCCHHH
Q 015289 49 QRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGS 128 (409)
Q Consensus 49 ~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~ 128 (409)
++|+++++++|++.||+++.|+++.++.++|||+ ++|++||||+.|.|.|++|+..++...+.+.++.+.+.+..+..
T Consensus 2 ~~i~~~~~~lpl~~p~~~a~g~~~~~~~viV~l~-d~G~~G~GE~~p~~~~~~et~~~~~~~l~~~~~~~~~~~~~~~~- 79 (322)
T PRK05105 2 RSAQLYRYQIPMDAGVPLRKQRLKTRDGLVVQLR-EGEREGWGEIAPLPGFSQETLEEAQEALLAWLNNWLAGDCDDEL- 79 (322)
T ss_pred cceEEEEEEEecCCCceecceEEEEeeeEEEEEE-ECCcEEEEEeCCCCCCCccCHHHHHHHHHHHHHHhhcCcccccc-
Confidence 4799999999999999999999999999999997 88999999999999999999988877666644334443332211
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEe
Q 015289 129 VFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLK 208 (409)
Q Consensus 129 ~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiK 208 (409)
...+.+++++++|+||+.||..+.|++.. .+++..+++++.++++++ +||++||+|
T Consensus 80 -----------~~~~~a~~~i~~Al~dl~gk~~~~~~~~~-----------~~l~~~~~~~~~~~a~~~--~Gf~~~KvK 135 (322)
T PRK05105 80 -----------SQYPSVAFGLSCALAELAGTLPQAANYRT-----------APLCYGDPDELILKLADM--PGEKVAKVK 135 (322)
T ss_pred -----------ccCcHHHHHHHHHHHHhcCCCCCCCCcce-----------eeeecCCHHHHHHHHHHc--CCCCEEEEE
Confidence 12346789999999999999999988621 234456788888888876 899999999
Q ss_pred cC-CChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHh---CCCCCceeecCCCCCCHHHHHHhHHHhhcc
Q 015289 209 VG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE---MGVTPVLFEQPVHRDDWEGLGHVSHIAKDK 284 (409)
Q Consensus 209 vG-~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~---~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~ 284 (409)
+| .++++|++++++||+..+++.|++|+|++|++++|+++++++++ +++ .|||||++. .++++++++ +
T Consensus 136 vG~~~~~~d~~~i~~vr~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i--~~iEqP~~~--~~~~~~l~~----~ 207 (322)
T PRK05105 136 VGLYEAVRDGMLVNLLLEAIPDLKLRLDANRGWTLEKAQQFAKYVPPDYRHRI--AFLEEPCKT--PDDSRAFAR----A 207 (322)
T ss_pred ECCCCHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCc--cEEECCCCC--HHHHHHHHH----h
Confidence 99 57899999999999977899999999999999999999999998 776 599999964 556777764 6
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCC
Q 015289 285 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGC 363 (409)
Q Consensus 285 ~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~ 363 (409)
+++||++|||+.++. +...+ .+++|++|+|++++| ++++++++++|+++|+++++|||+||+++.++++|+++++++
T Consensus 208 ~~~PIa~DEs~~~~~-~~~~~-~~~~d~i~ik~~k~GGi~~a~~i~~~A~~~gi~~~~~~~~es~i~~aa~~hla~~~~~ 285 (322)
T PRK05105 208 TGIAIAWDESLREPD-FQFEA-EPGVRAIVIKPTLTGSLEKCQELIEQAHALGLRAVISSSIESSLGLTQLARLAAWLTP 285 (322)
T ss_pred CCCCEEECCCCCchh-hhhhh-cCCCCEEEECccccCCHHHHHHHHHHHHHcCCcEEEECchhHHHHHHHHHHHHHhcCC
Confidence 889999999999975 44444 567999999999998 999999999999999999999999999999999999999955
Q ss_pred CceeccccccccccCCC
Q 015289 364 FKFIDLDTPLLLSEDPV 380 (409)
Q Consensus 364 ~~~~e~~~p~~~~~d~~ 380 (409)
..++.++++.++.+|+.
T Consensus 286 ~~~~~l~t~~~~~~d~~ 302 (322)
T PRK05105 286 DTIPGLDTLDLMQAQLV 302 (322)
T ss_pred CCCCCCChHHHHhhccc
Confidence 56777888877777754
|
|
| >PRK02714 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-51 Score=403.19 Aligned_cols=293 Identities=20% Similarity=0.286 Sum_probs=240.5
Q ss_pred EEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCCHHHH
Q 015289 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSV 129 (409)
Q Consensus 50 ~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~ 129 (409)
+++++++++|++.||+++.|+.+.++.++|+|+|++|++||||+.|.|.|++|+.+.+...++.+.|.+.+ ..+
T Consensus 4 ~~~~~~~~lpl~~p~~~a~g~~~~~~~~iV~l~~~~G~~G~GE~~p~p~~~~et~~~~~~~l~~l~~~l~~------~~~ 77 (320)
T PRK02714 4 RFAFRPYQRPFRQPLQTAHGLWRIREGIILRLTDETGKIGWGEIAPLPWFGSETLEEALAFCQQLPGEITP------EQI 77 (320)
T ss_pred EEEEEEEEEecCCceEeccceEEEeEEEEEEEEeCCCCeEEEEecCCCCCCcccHHHHHHHHHhccccCCH------HHH
Confidence 56799999999999999999999999999999999999999999999999999888776555544444432 211
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEec
Q 015289 130 FGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV 209 (409)
Q Consensus 130 ~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKv 209 (409)
..+... ++.+++|||+|+.|+.++..+. ....++++.. +.+++++.+++++++++||++||+|+
T Consensus 78 -~~~~~~-----~~~~~~aie~A~d~~~~~~~~~--------~~~~~~~~~~--i~~~~~~~~~a~~~~~~G~~~~KvKv 141 (320)
T PRK02714 78 -FSIPDA-----LPACQFGFESALENESGSRSNV--------TLNPLSYSAL--LPAGEAALQQWQTLWQQGYRTFKWKI 141 (320)
T ss_pred -Hhhhhc-----CCHHHHHHHHHHHHHhcccccC--------CcCCCceeee--cCCCHHHHHHHHHHHHcCCCEEEEEE
Confidence 111111 2357999999933455544221 1123444443 44567888899999999999999999
Q ss_pred CC-ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHh---CCCCCceeecCCCCCCHHHHHHhHHHhhcc
Q 015289 210 GK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE---MGVTPVLFEQPVHRDDWEGLGHVSHIAKDK 284 (409)
Q Consensus 210 G~-~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~---~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~ 284 (409)
|. ++++|+++|+++|+. ++++.|++|+|++|+.++|+++++.|++ +++ .|||||++.+|++++++|++ +
T Consensus 142 G~~~~~~d~~~v~air~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~l~~~~i--~~iEqP~~~~~~~~~~~l~~----~ 215 (320)
T PRK02714 142 GVDPLEQELKIFEQLLERLPAGAKLRLDANGGLSLEEAKRWLQLCDRRLSGKI--EFIEQPLPPDQFDEMLQLSQ----D 215 (320)
T ss_pred CCCChHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhhccCCCc--cEEECCCCcccHHHHHHHHH----h
Confidence 95 578899999999997 7899999999999999999999999998 665 59999999999999999874 6
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCC
Q 015289 285 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGC 363 (409)
Q Consensus 285 ~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~ 363 (409)
+++||++|||++++.++.++++.+++|++|+|++|+| ++++ .++|+++|+++++|||+||+++.++++|+++++++
T Consensus 216 ~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GGi~~~---~~~a~~~gi~~~~~~~~es~ig~aa~~hlaa~~~~ 292 (320)
T PRK02714 216 YQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGSPSRL---RQFCQQHPLDAVFSSVFETAIGRKAALALAAELSR 292 (320)
T ss_pred CCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCCHHHH---HHHHHHhCCCEEEEechhhHHHHHHHHHHHHhCCC
Confidence 8999999999999999999999999999999999998 8754 47899999999999999999999999999999886
Q ss_pred C-ceecccccc
Q 015289 364 F-KFIDLDTPL 373 (409)
Q Consensus 364 ~-~~~e~~~p~ 373 (409)
. ..+-+++..
T Consensus 293 ~~~~~g~~~~~ 303 (320)
T PRK02714 293 PDRALGFGVTH 303 (320)
T ss_pred CCCCCCCCCcc
Confidence 2 234454433
|
|
| >TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=404.12 Aligned_cols=287 Identities=17% Similarity=0.227 Sum_probs=245.1
Q ss_pred eeeeEEEEEEEECCCceEEEEeccCCccCccc-------HHHHHHHHH-HHHHHHcCCCCCCHHHHHHHHHhhc-CCChh
Q 015289 72 DQVENVAIRIELSNGCVGWGEAPVLPHVTAED-------QQTAMVKAS-EACEVLKESPAMALGSVFGVVAGLL-PGHQF 142 (409)
Q Consensus 72 ~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~-------~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~-~g~~~ 142 (409)
...+.++|+|+|++|.+|||||.+. .|++++ ...+...++ .++|.|+|+++.+++.+++.+.... .+...
T Consensus 47 ~~~~~vlV~i~tddG~~G~GE~~~~-~ysg~~g~~~~~~~~~~~~~i~~~laP~LiG~d~~~~~~l~~~~~~~~~~~~~~ 125 (408)
T TIGR01502 47 QPGESLSVLLVLEDGQVVHGDCAAV-QYSGAGGRDPLFLAKDFIPVIEKEVAPKLIGRDITNFKDMAEVFEKMTVNRNLH 125 (408)
T ss_pred ecCcEEEEEEEECCCCEEEEEeecc-eeccCccccccccHHHHHHHHHHHhhHHHcCCCccCHHHHHHHHHHHhhcCcch
Confidence 3468999999999999999999873 566664 444445555 4799999999999999999987753 12112
Q ss_pred hHHHHHHHHHHHHHHHhhcCCchHHHhC------CCCCeeeeeeeecC---CCHHHHHHHHHHHHHcC-CCeEEEecCCC
Q 015289 143 ASVRAAVEMALIDAVAKSVSMPLWRLFG------GVSNTITTDITIPI---VSPAEAAELASKYRKQG-FTTLKLKVGKN 212 (409)
Q Consensus 143 ~~a~said~AlwDl~gk~~g~Pl~~LLG------g~~~~i~~~~~i~~---~~~~~~~~~~~~~~~~G-f~~~KiKvG~~ 212 (409)
.++++|||+||||++||..|+|+|+||| +..+++|+|.+++. .+++++...+++++++| |+.+| |+|.+
T Consensus 126 ~a~kaavd~AL~D~~ak~~g~pl~~LLG~~~~~~~~~~~vp~~~s~g~~~~~~~d~m~~~a~~~~~~G~~~~~K-kvG~~ 204 (408)
T TIGR01502 126 TAIRYGVSQALLDAAAKTRKTTMAEVIRDEYNPGAETNAVPVFAQSGDDRYDNVDKMILKEVDVLPHGLINSVE-ELGLD 204 (408)
T ss_pred hHHHHHHHHHHHHHHHHHcCCcHHHHhCcccccCCcCCceeEEEEeeccCCCCHHHHHHHHHHHHhccCcccee-eecCC
Confidence 4578999999999999999999999998 66679999999875 56899999999999998 99999 89976
Q ss_pred hh-------HHHHHHHHHHhhCCCcEEEEeCCC------CCCHHHHHHHHHHHHh----CCCCCceeecCCCCCC----H
Q 015289 213 LK-------EDIEVLRAIRAVHPDSSFILDANE------GYKPQEAVEVLEKLYE----MGVTPVLFEQPVHRDD----W 271 (409)
Q Consensus 213 ~~-------~d~~~l~avr~~~~~~~l~vDaN~------~w~~~~A~~~~~~L~~----~~l~~~~iEeP~~~~d----~ 271 (409)
.. ++.++++++|+.+++..|++|+|+ +||+++|+++++.|++ +++ |||||++.+| +
T Consensus 205 ~~k~~~~~~~~~~ri~~lr~~g~~~~l~vDaN~~~~~~~~~~~~~ai~~l~~l~~~~~~~~~---~iEqPv~~~d~~~~~ 281 (408)
T TIGR01502 205 GEKLLEYVKWLRDRIIKLGREGYAPIFHIDVYGTIGEAFGVDIKAMADYIQTLAEAAKPFHL---RIEGPMDVGSRQAQI 281 (408)
T ss_pred HHHhhhhHHHHHHHHHHhhccCCCCeEEEEcCCCcccccCCCHHHHHHHHHHHHHhCccCCe---EEecCCCCCcchhhH
Confidence 43 444667777744668899999998 9999999999999986 553 9999999865 9
Q ss_pred HHHHHhHHHh-hccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCC-chH
Q 015289 272 EGLGHVSHIA-KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETR 348 (409)
Q Consensus 272 ~~~~~l~~~~-~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~-es~ 348 (409)
+++++|++.+ .+.+++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|||. ||+
T Consensus 282 e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~~es~ 361 (408)
T TIGR01502 282 EAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTCNETN 361 (408)
T ss_pred HHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCCCCCH
Confidence 9999997521 1236899999999999999999999999999999999998 999999999999999999999986 999
Q ss_pred HHHHHHHHHHccCCC
Q 015289 349 LAMGFAGHLSAGLGC 363 (409)
Q Consensus 349 i~~~~~~hlaaa~~~ 363 (409)
++.++++|++++.+.
T Consensus 362 I~~aa~~Hlaaa~~~ 376 (408)
T TIGR01502 362 RSAEVTTHVGMATGA 376 (408)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999998764
|
This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation. |
| >cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-51 Score=402.48 Aligned_cols=287 Identities=17% Similarity=0.253 Sum_probs=232.3
Q ss_pred eEEEEEEEECCCceEEEEeccCC--ccCcccH----HHHHHHHH-HHHHHHcCCCCCCHHHHHHHHHhhc-CCCh-hhHH
Q 015289 75 ENVAIRIELSNGCVGWGEAPVLP--HVTAEDQ----QTAMVKAS-EACEVLKESPAMALGSVFGVVAGLL-PGHQ-FASV 145 (409)
Q Consensus 75 ~~~iVrl~td~G~~G~GE~~~~~--~~~~e~~----~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~-~g~~-~~~a 145 (409)
+.++|||+||+|++||||+.+.. ..++++. ......++ .+.|.|+|+++.+++.+|+.+++.. .|+. ...+
T Consensus 13 ~~vlV~I~tddG~~G~GEa~~~~~~~~~g~~~~~~~~~~~~~i~~~lap~LiG~d~~~i~~i~~~m~~~~~~g~~~~~aa 92 (369)
T cd03314 13 EAISVMLVLEDGQVAVGDCAAVQYSGAGGRDPLFLAADFIPVIEKVIAPALVGRDVANFRPAAAVLDKMRLDGNRLHTAI 92 (369)
T ss_pred cEEEEEEEECCCCEEEEecccccccCcCCcccccchHHHHHHHHHhhhhHhcCCCHHHHHHHHHHHHHHhhcCCcchhhH
Confidence 68999999999999999987531 1223322 22333344 4789999999999999999987643 2332 2357
Q ss_pred HHHHHHHHHHHHHhhcCCchHHHhC-----CC-CCeeeeeeeecCC---CHHHHHHHHHHHHH---------cCCCeEEE
Q 015289 146 RAAVEMALIDAVAKSVSMPLWRLFG-----GV-SNTITTDITIPIV---SPAEAAELASKYRK---------QGFTTLKL 207 (409)
Q Consensus 146 ~said~AlwDl~gk~~g~Pl~~LLG-----g~-~~~i~~~~~i~~~---~~~~~~~~~~~~~~---------~Gf~~~Ki 207 (409)
+||||+||||++||.+|+|||+||| |. ++++++|.+++.. ..+++.++++++++ +||+.+|+
T Consensus 93 ksAIDiALwDl~gK~~g~Pv~~LLGg~~~~g~~r~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~kG~~~~K~ 172 (369)
T cd03314 93 RYGVSQALLDAVALAQRRTMAEVLCDEYGLPLADEPVPIFAQSGDDRYINVDKMILKGADVLPHALINNVEEKGPKGEKL 172 (369)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHcCCcccCCCcccceEEEEEecCcccccHHHHHHHHHhhhhhhhhhhHhhcCccHHHH
Confidence 8999999999999999999999999 32 5689999876643 34666665555543 36666666
Q ss_pred ecCCChhHHHHHHHHHHhhCCCcEEEEeCCCC----C--CHHHHHHHHHHHHhC-C-CCCceeecCCCCCC----HHHHH
Q 015289 208 KVGKNLKEDIEVLRAIRAVHPDSSFILDANEG----Y--KPQEAVEVLEKLYEM-G-VTPVLFEQPVHRDD----WEGLG 275 (409)
Q Consensus 208 KvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~----w--~~~~A~~~~~~L~~~-~-l~~~~iEeP~~~~d----~~~~~ 275 (409)
|. ++++|.++++++|..+++..|++|+|++ | |+++|+++++.|+++ + + +.|||||++++| +++|+
T Consensus 173 ~~--~~~~~~~~v~avr~~G~~~~l~vDaN~~w~~~~~~~~~~A~~~~~~Le~~~~~~-~~~iEqP~~~~d~~~~~~~~a 249 (369)
T cd03314 173 LE--YVKWLSDRIRKLGRPGYHPILHIDVYGTIGQAFDPDPDRAADYLATLEEAAAPF-PLRIEGPMDAGSREAQIERMA 249 (369)
T ss_pred HH--hHHHHHHHHHHHhhcCCCCEEEEEcCCccccccCCCHHHHHHHHHHHHHhcCCC-cEEEecCCCCCcchhhHHHHH
Confidence 54 4578899999999448999999999986 6 999999999999986 2 2 369999999865 89999
Q ss_pred HhHHHh-hccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCC-chHHHHH
Q 015289 276 HVSHIA-KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMG 352 (409)
Q Consensus 276 ~l~~~~-~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~-es~i~~~ 352 (409)
+|++.. ++.+++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. +|+++.+
T Consensus 250 ~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~~~~es~I~~a 329 (369)
T cd03314 250 ALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGSCNETDISAR 329 (369)
T ss_pred HHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHH
Confidence 997521 1125899999999999999999999999999999999998 999999999999999999999874 9999999
Q ss_pred HHHHHHccCCCC
Q 015289 353 FAGHLSAGLGCF 364 (409)
Q Consensus 353 ~~~hlaaa~~~~ 364 (409)
+++|+++++++.
T Consensus 330 a~lHlaaa~~~~ 341 (369)
T cd03314 330 VTVHVALATRAD 341 (369)
T ss_pred HHHHHHHhcCCc
Confidence 999999998864
|
This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-50 Score=375.75 Aligned_cols=225 Identities=31% Similarity=0.545 Sum_probs=212.1
Q ss_pred EEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCCHHHHH
Q 015289 51 AENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVF 130 (409)
Q Consensus 51 i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (409)
|+++++++|++.||.++.++...++.++|||+|++|++||||+
T Consensus 1 i~~~~~~~p~~~~~~~~~~~~~~~~~~iv~l~~~~G~~G~Ge~------------------------------------- 43 (229)
T cd00308 1 VEVYAVRLPTSRPFYLAGGTADTNDTVLVKLTTDSGVVGWGEV------------------------------------- 43 (229)
T ss_pred CEEEEEEeecCCceEecCceEeeceeEEEEEEECCCCcchhhH-------------------------------------
Confidence 4678999999999999999999999999999999999999997
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEec
Q 015289 131 GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV 209 (409)
Q Consensus 131 ~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKv 209 (409)
++||||||||+.||.+|+|+|+||||. ++++|+|.+
T Consensus 44 ---------------~~aid~Al~Dl~gk~~~~pl~~llgg~~~~~v~~~~~---------------------------- 80 (229)
T cd00308 44 ---------------ISGIDMALWDLAAKALGVPLAELLGGGSRDRVPAYGS---------------------------- 80 (229)
T ss_pred ---------------HHHHHHHHHHHhHhHcCCcHHHHcCCCCCCceeccHH----------------------------
Confidence 789999999999999999999999996 568888865
Q ss_pred CCChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCe
Q 015289 210 GKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288 (409)
Q Consensus 210 G~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ip 288 (409)
+++++++|+. ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|++ ++++|
T Consensus 81 -------~~~i~~lr~~~g~~~~l~lDaN~~~~~~~a~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~L~~----~~~~p 147 (229)
T cd00308 81 -------IERVRAVREAFGPDARLAVDANGAWTPKEAIRLIRALEKYGL--AWIEEPCAPDDLEGYAALRR----RTGIP 147 (229)
T ss_pred -------HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCC--CeEECCCCccCHHHHHHHHh----hCCCC
Confidence 8899999998 6899999999999999999999999999986 49999999999999999875 67899
Q ss_pred EEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCcee
Q 015289 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI 367 (409)
Q Consensus 289 Ia~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~ 367 (409)
|++||++.+..++.++++.+++|++|+|++++| ++++++++++|+++|+++++|++++|+++.++++|++++++|+.+.
T Consensus 148 Ia~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~s~i~~~a~~hlaa~~~~~~~~ 227 (229)
T cd00308 148 IAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLESSIGTAAALHLAAALPNDRAI 227 (229)
T ss_pred EEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCCCHHHHHHHHHHHHhCCCchhh
Confidence 999999999999999999999999999999998 9999999999999999999999999999999999999999997776
Q ss_pred c
Q 015289 368 D 368 (409)
Q Consensus 368 e 368 (409)
|
T Consensus 228 e 228 (229)
T cd00308 228 E 228 (229)
T ss_pred c
Confidence 5
|
Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase. |
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-49 Score=451.12 Aligned_cols=332 Identities=24% Similarity=0.297 Sum_probs=266.3
Q ss_pred ccccceeeeEeEEEEEEEEecCccceeeccce--eeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHH-----
Q 015289 39 NLTQTFTVDVQRAENRPLNVPLIAPFTIATSR--LDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA----- 111 (409)
Q Consensus 39 ~~~~~~~mkI~~i~~~~~~~pl~~p~~~a~~~--~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~----- 111 (409)
..+..+.|||++|+++++++|++.||+++.|+ ...++.++|+|+|++|.+||||+.+.+. +.|+...+...+
T Consensus 924 ~~~~~~~~~I~~i~~~~~~lpl~~p~~~a~g~~~~~~r~~~lV~l~~ddG~~G~GEa~pl~~-~~et~~~~~~~l~~~~~ 1002 (1655)
T PLN02980 924 IIDGVFLCKISGMEYSLYRIQLCAPPTSASVDFSQFHREGFILSLSLEDGSVGFGEVAPLEI-HEEDLLDVEEQLRFLLH 1002 (1655)
T ss_pred cccccccceEeEEEEEEEEeeccCCcEeeccccccceeeEEEEEEEECCCCEEEEecCCCCC-CccccccHHHHHHHHHH
Confidence 35566899999999999999999999999875 3458999999999999999999998753 345433222111
Q ss_pred -------HHHHHHHcCCCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCC---------e
Q 015289 112 -------SEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSN---------T 175 (409)
Q Consensus 112 -------~~~~~~l~g~~~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~---------~ 175 (409)
..+.|.++|++. +.+++.+.. ..+..++++++||||||||+.||..|+|+|+||||.++ +
T Consensus 1003 ~l~~~~~~~l~p~l~G~~~---~~~~~~l~~-~~~~~~psa~~ald~ALwDl~gk~~g~Pl~~LLGg~~~~~~~~~~~~~ 1078 (1655)
T PLN02980 1003 VIKGAKISFMLPLLKGSFS---SWIWSELGI-PPSSIFPSVRCGLEMAILNAIAVRHGSSLLNILDPYQKDENGSEQSHS 1078 (1655)
T ss_pred HHhhhhhhhhhHhhcCcch---HHHHHHhhc-cccccchHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCcceeccccc
Confidence 123577777743 333444321 11123467999999999999999999999999988432 3
Q ss_pred eeeeeee-cCCCHHHHHHHHHHHHHcCCCeEEEecCC--ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHH
Q 015289 176 ITTDITI-PIVSPAEAAELASKYRKQGFTTLKLKVGK--NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEK 251 (409)
Q Consensus 176 i~~~~~i-~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~--~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~ 251 (409)
++++..+ +..+++++.+++++++++||+++|+|+|. ++++|++++++||+. ++++.||+|||++|+.++|++++++
T Consensus 1079 v~v~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KlKvG~~~~~~~D~~~i~alRe~~G~~~~LrlDAN~~ws~~~A~~~~~~ 1158 (1655)
T PLN02980 1079 VQICALLDSNGSPLEVAYVARKLVEEGFSAIKLKVGRRVSPIQDAAVIQEVRKAVGYQIELRADANRNWTYEEAIEFGSL 1158 (1655)
T ss_pred eeeeeccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 5555544 35688999999999999999999999995 588999999999997 7899999999999999999999999
Q ss_pred HHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHH-----HHHHHHcCCCCEEEeCCCCCc-HHHH
Q 015289 252 LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD-----VKKIVKGNLADVINIKLAKVG-VLGA 325 (409)
Q Consensus 252 L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~-----~~~~i~~~a~div~~k~~~~G-i~~~ 325 (409)
|+++++. |||||++ +.+++++|++ ++++|||+||++.+..+ ++.+++.++ +++++|++++| ++++
T Consensus 1159 L~~~~i~--~iEqPl~--~~~~l~~l~~----~~~iPIA~DEs~~~~~~~~~~~~~~~i~~~~-~~i~iK~~~~GGit~~ 1229 (1655)
T PLN02980 1159 VKSCNLK--YIEEPVQ--DEDDLIKFCE----ETGLPVALDETIDKFEECPLRMLTKYTHPGI-VAVVIKPSVVGGFENA 1229 (1655)
T ss_pred HhhcCCC--EEECCCC--CHHHHHHHHH----hCCCCEEeCCCcCCcccchHHHHHHHHHCCC-eEEEeChhhhCCHHHH
Confidence 9999874 9999997 4678888864 68999999999998754 677777764 58899999998 9999
Q ss_pred HHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCC---------------ceeccccccccccCCCCCCe
Q 015289 326 LEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCF---------------KFIDLDTPLLLSEDPVLDGY 384 (409)
Q Consensus 326 ~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~---------------~~~e~~~p~~~~~d~~~~~~ 384 (409)
++++++|+++|+++++||++||+|++++++|+|+.++.. ..+-+++..++.+|+...++
T Consensus 1230 ~~ia~~A~~~gi~~~~~s~~es~Ig~aA~~hlaa~~~~~~~~~~~~~~~~~~~~~a~Gl~t~~~~~~d~~~~pl 1303 (1655)
T PLN02980 1230 ALIARWAQQHGKMAVISAAYESGLGLSAYIQFASYLEMQNAKASREMNKGTCPSVAHGLGTYRWLKEDVTMNPL 1303 (1655)
T ss_pred HHHHHHHHHcCCeEEecCcccCHHHHHHHHHHHHhchhhcccccccccccCCCCcCCCCchHhHhhccCccCCc
Confidence 999999999999999999999999999999999987422 12334555556667654443
|
|
| >PRK02901 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=337.78 Aligned_cols=280 Identities=26% Similarity=0.391 Sum_probs=231.2
Q ss_pred EEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 015289 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFG 131 (409)
Q Consensus 52 ~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 131 (409)
++..+++||+-.| ...+.|+.++++ |-.||||.+|.+.|+.|.. ..+
T Consensus 13 ~~~~~~~p~~~~~----~~~~~r~~~~~~-----~~~~w~e~~p~~~~~~~~~----------~~~-------------- 59 (327)
T PRK02901 13 RAHVVALPMRVRF----RGITVREAVLIE-----GPAGWGEFSPFLEYDPAEA----------AAW-------------- 59 (327)
T ss_pred cCeEEeccccccc----CCcceeEEEEEe-----cCCceEEecCCCCCCHHHH----------HHH--------------
Confidence 3556778887433 456788999988 9999999999887765511 011
Q ss_pred HHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCC
Q 015289 132 VVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK 211 (409)
Q Consensus 132 ~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~ 211 (409)
..+++|.|- .+-|- ..+++||+|.+++..+++++.+.++++ .||+++|+|+|.
T Consensus 60 -------------~~~~~~~~~-------~~~~~-----~~r~~vp~~~tv~~~~~e~~~~~~~~~--~G~~~~KvKVg~ 112 (327)
T PRK02901 60 -------------LASAIEAAY-------GGPPP-----PVRDRVPVNATVPAVDAAQVPEVLARF--PGCRTAKVKVAE 112 (327)
T ss_pred -------------HHHHHHhhh-------ccCCc-----ccCCeEEeeEEeCCCCHHHHHHHHHHh--CCCCEEEEEECC
Confidence 134455442 11121 345789999998888887776666554 699999999973
Q ss_pred ---ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHH-HhCCCCCceeecCCCCCCHHHHHHhHHHhhccCC
Q 015289 212 ---NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKL-YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG 286 (409)
Q Consensus 212 ---~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L-~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ 286 (409)
++++|++++++||+. ||+..|++|+|++||+++|+++++.| +++++ .||||||+. ++++++|++ +++
T Consensus 113 ~~~~~~~Di~rv~avRe~lGpd~~LrvDAN~~ws~~~Ai~~~~~L~e~~~l--~~iEqP~~~--~~~la~Lr~----~~~ 184 (327)
T PRK02901 113 PGQTLADDVARVNAVRDALGPDGRVRVDANGGWSVDEAVAAARALDADGPL--EYVEQPCAT--VEELAELRR----RVG 184 (327)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHhhhccCc--eEEecCCCC--HHHHHHHHH----hCC
Confidence 688999999999998 79999999999999999999999999 77886 599999974 888998874 689
Q ss_pred CeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCc
Q 015289 287 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFK 365 (409)
Q Consensus 287 ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~ 365 (409)
+|||+|||+++..++.++++.+++|++|+|++++| ++++++ +|+++|+++++||+++|++++++++|+++++++..
T Consensus 185 vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GGit~~lk---iA~~~gi~v~v~s~~es~ig~aA~lhlaaalp~~~ 261 (327)
T PRK02901 185 VPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGGVRAALD---IAEQIGLPVVVSSALDTSVGIAAGLALAAALPELD 261 (327)
T ss_pred CCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCCHHHHHH---HHHHcCCcEEEeCCcccHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999998 988887 57899999999999999999999999999999877
Q ss_pred e-eccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 366 F-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 366 ~-~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
+ +++++..++..|+ .+++.++||++.+|+ +++|++.+
T Consensus 262 ~~~gl~t~~~~~~dl-~~~l~~~dG~i~vp~-----v~~d~~~l 299 (327)
T PRK02901 262 HACGLATGGLFEEDV-ADPLLPVDGFLPVRR-----VTPDPARL 299 (327)
T ss_pred cccccCchhhhhhcc-CCCceeeCCEEeCCC-----CCCCHHHH
Confidence 6 6777654555677 677889999999998 78988765
|
|
| >PRK00077 eno enolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-40 Score=330.77 Aligned_cols=300 Identities=21% Similarity=0.278 Sum_probs=234.6
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccC----------------CccCcccHHHHHH
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL----------------PHVTAEDQQTAMV 109 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~----------------~~~~~e~~~~~~~ 109 (409)
|+|++|..+.+- .|.| ++++.|+|+|++|.+|+|+++.. ..|.++++..++.
T Consensus 2 ~~I~~v~~r~i~--------dsrg----~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~ 69 (425)
T PRK00077 2 SKIEDIIAREIL--------DSRG----NPTVEVEVTLEDGAFGRAAVPSGASTGEREAVELRDGDKSRYLGKGVLKAVE 69 (425)
T ss_pred CeEEEEEEEEEE--------cCCC----CeEEEEEEEECCCCEEEEEEeccCCCCcceeeecCCCCccccCCcCHHHHHH
Confidence 689999988862 2333 57899999999999999997531 1255666677777
Q ss_pred HHHH-HHHHHcCCCCCCHHHHHHHHHhhc----CCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCC---eeeeeee
Q 015289 110 KASE-ACEVLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSN---TITTDIT 181 (409)
Q Consensus 110 ~~~~-~~~~l~g~~~~~~~~~~~~~~~~~----~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~---~i~~~~~ 181 (409)
.+++ +.|.|+|+++.+++.+++.|.+.. .++....+++|||||+||+.||..|+|||+||||..+ .+|.|..
T Consensus 70 ~v~~~iap~LiG~d~~d~~~id~~l~~ldgt~~~~~~G~nAi~avsiAl~da~ak~~g~PLy~lLGG~~~~~~pvp~~n~ 149 (425)
T PRK00077 70 NVNEEIAPALIGLDALDQRAIDKAMIELDGTPNKSKLGANAILGVSLAVAKAAADSLGLPLYRYLGGPNAKVLPVPMMNI 149 (425)
T ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhhCccccCccchHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCcccccceeEEE
Confidence 6754 789999999999999999887531 1111146899999999999999999999999999543 4555544
Q ss_pred ecC----CCHHHH------------HHHHHHHHHcCCCeEEE---------ecC------CChhHHHHHHHHHHhh----
Q 015289 182 IPI----VSPAEA------------AELASKYRKQGFTTLKL---------KVG------KNLKEDIEVLRAIRAV---- 226 (409)
Q Consensus 182 i~~----~~~~~~------------~~~~~~~~~~Gf~~~Ki---------KvG------~~~~~d~~~l~avr~~---- 226 (409)
++. ....++ .+++.++..++|+.+|. ++| ++++.|.++|+++|++
T Consensus 150 i~GG~ha~~~~~~qe~~i~p~~~~~~~ea~~~~~~~~~~lK~~l~~~g~~~~vGdeGg~~p~~~~~~e~l~~lreAi~~a 229 (425)
T PRK00077 150 INGGAHADNNVDIQEFMIMPVGAPSFKEALRMGAEVFHTLKKVLKEKGLSTAVGDEGGFAPNLKSNEEALDLILEAIEKA 229 (425)
T ss_pred EcccccccCchhhhHhhcCCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCcCCcCCCccchHHHHHHHHHHHHHh
Confidence 321 111111 13344445566888886 355 4568899999999986
Q ss_pred ----CCCcEEEEeCC-------CC-------CCHHHHHHHHHH-HHhCCCCCceeecCCCCCCHHHHHHhHHHhhccC--
Q 015289 227 ----HPDSSFILDAN-------EG-------YKPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF-- 285 (409)
Q Consensus 227 ----~~~~~l~vDaN-------~~-------w~~~~A~~~~~~-L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~-- 285 (409)
|+++.|++|+| +. |+.+++++++.+ +++|++ .|||||++++|++++++|++ ++
T Consensus 230 g~~~G~di~l~lD~aas~~~~~~~y~~~~~~~s~~e~~~~~~~l~e~y~i--~~iEdPl~~~D~~g~~~L~~----~~~~ 303 (425)
T PRK00077 230 GYKPGEDIALALDCAASEFYKDGKYVLEGEGLTSEEMIDYLAELVDKYPI--VSIEDGLDENDWEGWKLLTE----KLGD 303 (425)
T ss_pred cCCCCCceEEEEehhhhhcccCCeeeccCCcCCHHHHHHHHHHHHhhCCc--EEEEcCCCCccHHHHHHHHH----hcCC
Confidence 67899999993 43 577787776555 566886 59999999999999999985 45
Q ss_pred CCeEEeCCC-CCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEE-ccCCchHHHHHHHHHHHccCC
Q 015289 286 GVSVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMI-GGMVETRLAMGFAGHLSAGLG 362 (409)
Q Consensus 286 ~ipIa~dEs-~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~-~~~~es~i~~~~~~hlaaa~~ 362 (409)
.+||++||+ ++++++++++++.+++|++|+|++++| ++++++++++|+++|+.+++ |++.||..+..+.+|++++.+
T Consensus 304 ~ipI~gdE~~~t~~~~~~~~i~~~a~d~v~ik~~~~GGitea~~ia~lA~~~gi~~~vsh~sgEt~d~~~a~lava~~~~ 383 (425)
T PRK00077 304 KVQLVGDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTLTETLDAIELAKRAGYTAVVSHRSGETEDTTIADLAVATNAG 383 (425)
T ss_pred CCeEEcCCCccCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEeCCCCcchHHHHHHHHHHhCCc
Confidence 599999997 578999999999999999999999998 99999999999999998765 889999999888888877654
Q ss_pred C
Q 015289 363 C 363 (409)
Q Consensus 363 ~ 363 (409)
.
T Consensus 384 ~ 384 (425)
T PRK00077 384 Q 384 (425)
T ss_pred c
Confidence 3
|
|
| >cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=322.36 Aligned_cols=283 Identities=21% Similarity=0.320 Sum_probs=224.9
Q ss_pred eeEEEEEEEECCCceEEEEeccC--C--------------ccCcccHHHHHHHHHH-HHHHHcCCCCCCHHHHHHHHHhh
Q 015289 74 VENVAIRIELSNGCVGWGEAPVL--P--------------HVTAEDQQTAMVKASE-ACEVLKESPAMALGSVFGVVAGL 136 (409)
Q Consensus 74 ~~~~iVrl~td~G~~G~GE~~~~--~--------------~~~~e~~~~~~~~~~~-~~~~l~g~~~~~~~~~~~~~~~~ 136 (409)
.+++.|+|+|++|.+|+|+++.. . .|+++++..++..+++ +.|.|+|+++.+.+.+++.|.+.
T Consensus 13 ~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d~~dq~~id~~l~~~ 92 (408)
T cd03313 13 NPTVEVEVTTEDGGVGRAAVPSGASTGEHEAVELRDGDKSRYLGKGVLKAVKNVNEIIAPALIGMDVTDQRAIDKLLIEL 92 (408)
T ss_pred CceEEEEEEECCCCEEEEeecCCCCCCcceeeecCCCCcccccCCcHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHh
Confidence 57899999999999999998641 1 2677778888877764 78999999999999999988653
Q ss_pred c----CCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCC-eeeee--eeecC--C-----C-------H--HHHHHH
Q 015289 137 L----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSN-TITTD--ITIPI--V-----S-------P--AEAAEL 193 (409)
Q Consensus 137 ~----~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~-~i~~~--~~i~~--~-----~-------~--~~~~~~ 193 (409)
. .+...+.+++|||||+||+.||.+|+|||++|||..+ ++|++ ..++. . + | .+..++
T Consensus 93 dgt~~~~~~G~nAi~avsiAl~da~A~~~g~PLy~~Lgg~~~~~lpvp~~nvi~GG~ha~~~~~iqe~~i~p~~~~~~~e 172 (408)
T cd03313 93 DGTPNKSKLGANAILGVSLAVAKAAAAALGLPLYRYLGGLAAYVLPVPMFNVINGGAHAGNKLDFQEFMIVPVGAPSFSE 172 (408)
T ss_pred cCCCcccccchHHHHHHHHHHHHHHHHHcCCcHHHHhcCCCCcccceeeEEEecCcccccCccccccccccccCccCHHH
Confidence 2 1122246899999999999999999999999999644 55544 32221 0 1 1 222355
Q ss_pred HHHHHHcCCCeEE-----------EecC------CChhHHHHHHHHHHhh--------CCCcEEEEeC------------
Q 015289 194 ASKYRKQGFTTLK-----------LKVG------KNLKEDIEVLRAIRAV--------HPDSSFILDA------------ 236 (409)
Q Consensus 194 ~~~~~~~Gf~~~K-----------iKvG------~~~~~d~~~l~avr~~--------~~~~~l~vDa------------ 236 (409)
+.++..+||+.+| +++| ++++.|.++|+.+|++ |+++.|++|+
T Consensus 173 a~~~~~~~~~~lK~~l~~~~g~~~~~vgdeGg~~p~~~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~ 252 (408)
T cd03313 173 ALRMGAEVYHTLKKVLKKKGGLLATNVGDEGGFAPNLSSNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYV 252 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhcCccccccccccCcCCCCCChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcce
Confidence 6677778898888 3333 4667899988888873 3589999999
Q ss_pred -----CCCCCHHHHHHHHHHH-HhCCCCCceeecCCCCCCHHHHHHhHHHhhccC--CCeEEeCCC-CCCHHHHHHHHHc
Q 015289 237 -----NEGYKPQEAVEVLEKL-YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF--GVSVAADES-CRSLDDVKKIVKG 307 (409)
Q Consensus 237 -----N~~w~~~~A~~~~~~L-~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~--~ipIa~dEs-~~~~~~~~~~i~~ 307 (409)
|+.||+++|+++++.| +++++ .|||||++++|++++++|++ ++ .+||++||. ++++++++++++.
T Consensus 253 ~~~~~~~~~t~~eai~~~~~l~e~~~i--~~iEdPl~~~D~eg~~~L~~----~~g~~ipi~gdE~~~~~~~~~~~~i~~ 326 (408)
T cd03313 253 YDSDEGKKLTSEELIDYYKELVKKYPI--VSIEDPFDEDDWEGWAKLTA----KLGDKIQIVGDDLFVTNPERLKKGIEK 326 (408)
T ss_pred eccCCCcccCHHHHHHHHHHHHHhCCc--EEEEeCCCCcCHHHHHHHHH----hcCCCCeEEcCCcccCCHHHHHHHHHh
Confidence 4557889999988886 56886 59999999999999999985 44 799999995 6799999999999
Q ss_pred CCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEE-ccCCchHHHHHHHHHHHccCC
Q 015289 308 NLADVINIKLAKVG-VLGALEIIEVVRASGLNLMI-GGMVETRLAMGFAGHLSAGLG 362 (409)
Q Consensus 308 ~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~-~~~~es~i~~~~~~hlaaa~~ 362 (409)
+++|++|+|++++| ++++++++++|+++|+++++ |++.||..+..+.+|++.+.+
T Consensus 327 ~a~d~v~ik~~~iGGite~~~ia~lA~~~G~~~~~sh~sget~d~~~adlava~~~~ 383 (408)
T cd03313 327 KAANALLIKVNQIGTLTETIEAIKLAKKNGYGVVVSHRSGETEDTFIADLAVALGAG 383 (408)
T ss_pred CCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEccCCCchhHHHHHHHHHHHhCcC
Confidence 99999999999998 99999999999999999977 778888887655555554443
|
The reaction is facilitated by the presence of metal ions. |
| >TIGR01060 eno phosphopyruvate hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=319.23 Aligned_cols=286 Identities=21% Similarity=0.307 Sum_probs=219.7
Q ss_pred eeEEEEEEEECCCceEEEEeccCC----------------ccCcccHHHHHHHHHH-HHHHHcCCCCCCHHHHHHHHHhh
Q 015289 74 VENVAIRIELSNGCVGWGEAPVLP----------------HVTAEDQQTAMVKASE-ACEVLKESPAMALGSVFGVVAGL 136 (409)
Q Consensus 74 ~~~~iVrl~td~G~~G~GE~~~~~----------------~~~~e~~~~~~~~~~~-~~~~l~g~~~~~~~~~~~~~~~~ 136 (409)
.+++.|+|+|++|..|+++++... .|.+.++..++..+++ +.|.|+|+++.+++.+++.|.+.
T Consensus 15 ~ptvev~v~~~~g~~g~~~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d~~d~~~id~~l~~~ 94 (425)
T TIGR01060 15 NPTVEVEVILEDGTFGRAAVPSGASTGEREALELRDGDKKRYLGKGVLKAVENVNDIIAPALIGMDAFDQREIDQIMIEL 94 (425)
T ss_pred CceEEEEEEECCCCEEEEeccCCCCCCcceeeeccCCCccccCCcCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 478999999999999999976421 1334455666666654 78999999999999999999652
Q ss_pred --cCCC--hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeee--c--C-----CCHHHH---------HHH
Q 015289 137 --LPGH--QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITI--P--I-----VSPAEA---------AEL 193 (409)
Q Consensus 137 --~~g~--~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i--~--~-----~~~~~~---------~~~ 193 (409)
.++. ....+++|||||+||+.||.+|+|||+||||. ++++|+++.. + . .+.+++ .++
T Consensus 95 d~t~~~~~~G~nAi~avs~Al~da~ak~~g~Ply~lLGG~~~~~lPvp~~n~i~GG~~a~~~~~~qe~~i~p~~a~~~~e 174 (425)
T TIGR01060 95 DGTPNKSKLGANAILGVSMAVAKAAAKSLGLPLYRYLGGKNAYVLPVPMMNIINGGAHADNNLDFQEFMIMPVGAKSFRE 174 (425)
T ss_pred CCcCCcchHHHHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCCceeeEEEEeecccccccCccCHHHHhccccchHHHHH
Confidence 1211 12368999999999999999999999999996 4577776432 1 1 123332 233
Q ss_pred HHHHHHcCCCeEE--Ee-------cC------CChh---HHHHH----HHHHHhh-CCCcEEEEeCCCC-----------
Q 015289 194 ASKYRKQGFTTLK--LK-------VG------KNLK---EDIEV----LRAIRAV-HPDSSFILDANEG----------- 239 (409)
Q Consensus 194 ~~~~~~~Gf~~~K--iK-------vG------~~~~---~d~~~----l~avr~~-~~~~~l~vDaN~~----------- 239 (409)
+.+...+||+.+| +| +| ++++ ++++. +++++.. ++++.|++|+|.+
T Consensus 175 ~~~~~~~g~~~lK~~l~~~~~~~~vGdeGg~~p~~~~~~~~l~~~~~ai~~~~~~~G~di~l~lD~aas~~~~~~~~~y~ 254 (425)
T TIGR01060 175 ALRMGAEVFHALKKLLKEKGLATGVGDEGGFAPNLASNEEALEIISEAIEKAGYKPGEDVALALDCAASEFYDEEDGKYV 254 (425)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcccccCCCccccHHHHHHHHHHHHHHhhccCCceEEEEEccccccccccCceee
Confidence 3333447899999 44 45 2222 33333 3333333 6789999999832
Q ss_pred -------CCHHHHHHHHHH-HHhCCCCCceeecCCCCCCHHHHHHhHHHhhccC--CCeEEeCCCC-CCHHHHHHHHHcC
Q 015289 240 -------YKPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF--GVSVAADESC-RSLDDVKKIVKGN 308 (409)
Q Consensus 240 -------w~~~~A~~~~~~-L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~--~ipIa~dEs~-~~~~~~~~~i~~~ 308 (409)
||.++|+++++. ++++++ .|||||++++|++++++|++ ++ .+||++||+. +++++++++++.+
T Consensus 255 ~~~~~~~~s~~eai~~~~~lle~~~i--~~iEdPl~~~D~~~~~~L~~----~~~~~ipI~gDE~~~t~~~~~~~~i~~~ 328 (425)
T TIGR01060 255 YKGENKQLTSEEMIEYYKELVEKYPI--VSIEDGLSEEDWEGWAELTK----ELGDKVQIVGDDLFVTNTEILREGIEMG 328 (425)
T ss_pred ecCcccccCHHHHHHHHHHHHhcCCc--EEEEcCCCcccHHHHHHHHH----hcCCCCeEEeCCCcccCHHHHHHHHHhC
Confidence 466799999995 678886 59999999999999999975 56 7999999985 5699999999999
Q ss_pred CCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEE-EccCCchHHHHHHHHHHHccCCCCc
Q 015289 309 LADVINIKLAKVG-VLGALEIIEVVRASGLNLM-IGGMVETRLAMGFAGHLSAGLGCFK 365 (409)
Q Consensus 309 a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~-~~~~~es~i~~~~~~hlaaa~~~~~ 365 (409)
++|++|+|++++| ++++++++++|+++|++++ .|++.||.++..+.+|++++.+...
T Consensus 329 a~d~v~ik~~~iGGItea~~ia~lA~~~Gi~~vv~h~sgEt~d~~~a~lava~~~~~ik 387 (425)
T TIGR01060 329 VANSILIKPNQIGTLTETLDAVELAKKAGYTAVISHRSGETEDTTIADLAVALNAGQIK 387 (425)
T ss_pred CCCEEEecccccCCHHHHHHHHHHHHHcCCcEEEecCCcccHHHHHHHHHHHhCcCccc
Confidence 9999999999998 9999999999999999955 6888899999999999988776443
|
Alternate name: enolase |
| >PLN00191 enolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=274.68 Aligned_cols=300 Identities=19% Similarity=0.252 Sum_probs=229.7
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCc----------eEEEEeccCC----ccCcccHHHHHHHH
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGC----------VGWGEAPVLP----HVTAEDQQTAMVKA 111 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~----------~G~GE~~~~~----~~~~e~~~~~~~~~ 111 (409)
|+|++|+.+.+- .|.| .+++.|+|+|++|. +|++|+.... .|.+..+..++..+
T Consensus 26 ~~I~~v~~r~il--------dsrG----~PtVeveV~~~~G~~~a~~psgastG~~Ea~elrd~~~~~~g~gv~~Av~~v 93 (457)
T PLN00191 26 ATITKVKARQII--------DSRG----NPTVEVDLHTSKGMFRAAVPSGASTGIYEALELRDGDKDYLGKGVLKAVKNV 93 (457)
T ss_pred CeeeEEEEEEEE--------cCCC----CeEEEEEEEECCCCEEEEeccCCCCCcceeeeccCCCcccCCccHHHHHHHH
Confidence 699999998862 3333 47899999999998 8999985431 15556677777777
Q ss_pred HH-HHHHHcCCCCCCHHHHHHHHHhhc----CCChhhHHHHHHHHHHHHHHHhhcCCchHHHh---CCC-CCeeeeeee-
Q 015289 112 SE-ACEVLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLF---GGV-SNTITTDIT- 181 (409)
Q Consensus 112 ~~-~~~~l~g~~~~~~~~~~~~~~~~~----~g~~~~~a~said~AlwDl~gk~~g~Pl~~LL---Gg~-~~~i~~~~~- 181 (409)
++ +.|.|+|+++.+.+.+++.|.+.- .+...+.++.|++||+|++.|+..|+|||++| ||. ...+|++..
T Consensus 94 ~~~ia~~LiG~~~~dq~~iD~~l~~ldgt~nk~~lGanailavS~A~a~AaA~~~~~PLy~~l~~~gg~~~~~lP~p~~n 173 (457)
T PLN00191 94 NEIIAPALIGMDPTDQTQIDNFMLELDGTPNKGKLGANAILAVSLAVCKAGAAEKGVPLYKHIADLAGNKKLVLPVPAFN 173 (457)
T ss_pred HHHHHHHHcCCChhhHHHHHHHHHHccCCCCccccchhHHHHHHHHHHHHHHHHcCCcHHHHHHhhCCCCCccccceeEE
Confidence 64 789999999999999988886532 12223568999999999999999999999999 774 446776641
Q ss_pred -e--c------------------CCCHHHHHH-------HHHHHHHc--CCCeEEEecC------CChhHHHHHHHHHHh
Q 015289 182 -I--P------------------IVSPAEAAE-------LASKYRKQ--GFTTLKLKVG------KNLKEDIEVLRAIRA 225 (409)
Q Consensus 182 -i--~------------------~~~~~~~~~-------~~~~~~~~--Gf~~~KiKvG------~~~~~d~~~l~avr~ 225 (409)
+ + ..+..+..+ ..++.++. |... ..+| ++++.+.+.|+.+++
T Consensus 174 iinGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~--~~vgdeGg~ap~~~~~~eal~ll~e 251 (457)
T PLN00191 174 VINGGSHAGNKLAMQEFMILPVGASSFKEAMQMGSEVYHHLKAVIKKKYGQDA--CNVGDEGGFAPNIQDNKEGLELLKE 251 (457)
T ss_pred eecCccccccccchheeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCc--CccCCCCCcCCCCCCHHHHHHHHHH
Confidence 1 1 011222211 11222222 3321 1233 356666776766666
Q ss_pred h----C--CCcEEEEeCCCC--------C---------------CHHHHHHHHHHHHh-CCCCCceeecCCCCCCHHHHH
Q 015289 226 V----H--PDSSFILDANEG--------Y---------------KPQEAVEVLEKLYE-MGVTPVLFEQPVHRDDWEGLG 275 (409)
Q Consensus 226 ~----~--~~~~l~vDaN~~--------w---------------~~~~A~~~~~~L~~-~~l~~~~iEeP~~~~d~~~~~ 275 (409)
+ + +++.|.+|+..+ | |.++++++++.|.+ |++ .|||||++.+|+++++
T Consensus 252 Ai~~ag~~~~i~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~I--~~IEDPl~~~D~eg~~ 329 (457)
T PLN00191 252 AIEKAGYTGKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPI--VSIEDPFDQDDWEHWA 329 (457)
T ss_pred HHHHcCCCCceEEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHhhcCCc--EEEECCCCcccHHHHH
Confidence 4 2 479999998543 3 78899999999655 875 5999999999999999
Q ss_pred HhHHHhhccCCCeEEeCCCC-CCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEcc-CCchHHHHH
Q 015289 276 HVSHIAKDKFGVSVAADESC-RSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG-MVETRLAMG 352 (409)
Q Consensus 276 ~l~~~~~~~~~ipIa~dEs~-~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~-~~es~i~~~ 352 (409)
+|++ +..+||++||+. +++.+++++++.+++|++++|++++| ++++++++++|+++|+++++++ |.||+++..
T Consensus 330 ~Lt~----~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~~a~lA~~~G~~~~ishrsgET~d~~~ 405 (457)
T PLN00191 330 KLTS----LEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIEAVKMSKAAGWGVMTSHRSGETEDSFI 405 (457)
T ss_pred HHHc----cCCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHCCCEEEeCCCCccchHHHH
Confidence 9975 578999999985 88999999999999999999999998 9999999999999999999965 999999999
Q ss_pred HHHHHHccCCCCc
Q 015289 353 FAGHLSAGLGCFK 365 (409)
Q Consensus 353 ~~~hlaaa~~~~~ 365 (409)
+.+|+|++.+.+.
T Consensus 406 Adlava~~~~~ik 418 (457)
T PLN00191 406 ADLAVGLATGQIK 418 (457)
T ss_pred HHHHHHhCCCccc
Confidence 9999999876543
|
|
| >PTZ00081 enolase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.6e-30 Score=258.14 Aligned_cols=297 Identities=21% Similarity=0.277 Sum_probs=217.4
Q ss_pred eeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCc----------eEEEEeccCC-----ccCcccHHHHHH
Q 015289 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGC----------VGWGEAPVLP-----HVTAEDQQTAMV 109 (409)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~----------~G~GE~~~~~-----~~~~e~~~~~~~ 109 (409)
.|+|++|+.+.+- .|.| ++++.|+|+|++|. +|++|+..+. .|.+..+..++.
T Consensus 1 ~~~I~~v~~r~i~--------dSrg----~ptvev~v~~~~G~~~a~~psgastG~~Ea~elrd~~~~~y~g~gv~~Av~ 68 (439)
T PTZ00081 1 MSTIKSIKAREIL--------DSRG----NPTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSRYLGKGVLKAVE 68 (439)
T ss_pred CcEEEEEEEEEEe--------cCCC----CceEEEEEEECCCCEEEecccCCCCceeeEeeccCCCccccCCccHHHHHH
Confidence 4789999998862 3333 57899999999998 9999985422 255666777777
Q ss_pred HHHH-HHHHHcCCCCCCHHHHHHHHHhh---c-------CCChhhHHHHHHHHHHHHHHHhhcCCchHHHh---CCCC--
Q 015289 110 KASE-ACEVLKESPAMALGSVFGVVAGL---L-------PGHQFASVRAAVEMALIDAVAKSVSMPLWRLF---GGVS-- 173 (409)
Q Consensus 110 ~~~~-~~~~l~g~~~~~~~~~~~~~~~~---~-------~g~~~~~a~said~AlwDl~gk~~g~Pl~~LL---Gg~~-- 173 (409)
.+++ +.|.|+|+++.+.+.+++.|.+. . .+...+.++.|++||+|++.|+..|+|||++| ||..
T Consensus 69 ~v~~~i~~~LiG~d~~dq~~iD~~l~~~ldgt~n~~~~~ks~lGanailavS~A~a~AaA~~~~~PLy~yL~~~~g~~~~ 148 (439)
T PTZ00081 69 NVNEIIAPALIGKDVTDQKKLDKLMVEQLDGTKNEWGWCKSKLGANAILAVSMAVARAAAAAKGVPLYKYLAQLAGKPTD 148 (439)
T ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhccCCcccccccccccchHHHHHHHHHHHHHHHHHcCCcHHHHHHHhcCCccC
Confidence 7765 78999999999999999888663 1 11122568999999999999999999999999 6641
Q ss_pred -Cee--eeeeeecC--------------------CCHHHHHH-------HHHHHHHc--CCCeEEEecC------CChhH
Q 015289 174 -NTI--TTDITIPI--------------------VSPAEAAE-------LASKYRKQ--GFTTLKLKVG------KNLKE 215 (409)
Q Consensus 174 -~~i--~~~~~i~~--------------------~~~~~~~~-------~~~~~~~~--Gf~~~KiKvG------~~~~~ 215 (409)
..+ |++..++. .+..+..+ ..++.++. |... ..+| ++++.
T Consensus 149 ~~~lP~P~~niinGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~--~~vgdeGgfap~~~~ 226 (439)
T PTZ00081 149 KFVLPVPCFNVINGGKHAGNKLAFQEFMIAPVGAPSFKEALRMGAEVYHSLKSVIKKKYGLDA--TNVGDEGGFAPNIKD 226 (439)
T ss_pred CccccceeEEeccCcccccccccceEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCc--cccccCCCcCCCCCC
Confidence 133 44442221 11222211 12222222 3321 1233 34445
Q ss_pred HHHHHHHHHh----hC--CCcEEEEeCCC------------------------CCCHHHHHHHH-HHHHhCCCCCceeec
Q 015289 216 DIEVLRAIRA----VH--PDSSFILDANE------------------------GYKPQEAVEVL-EKLYEMGVTPVLFEQ 264 (409)
Q Consensus 216 d~~~l~avr~----~~--~~~~l~vDaN~------------------------~w~~~~A~~~~-~~L~~~~l~~~~iEe 264 (409)
+.+.++.+++ ++ +++.|.+|+.. .+|.+|.+++. +.++++++ .||||
T Consensus 227 ~eeal~ll~eAi~~ag~~~~v~i~lD~Aase~~~~~~~~Y~~~f~~~~~~~~~~~s~~eli~~~~~~l~~y~I--~~IED 304 (439)
T PTZ00081 227 PEEALDLLVEAIKKAGYEGKVKICMDVAASEFYDKEKKVYDLDFKNPNNDKSNKLTGEELVELYLDLVKKYPI--VSIED 304 (439)
T ss_pred HHHHHHHHHHHHHHcCCcCceEEEEehhhhhhhhccCCceeeeeccccCccccccCHHHHHHHHHHHHhcCCc--EEEEc
Confidence 5555555544 43 46888888733 25666767754 67889986 59999
Q ss_pred CCCCCCHHHHHHhHHHhhccC--CCeEEeCCC-CCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEE
Q 015289 265 PVHRDDWEGLGHVSHIAKDKF--GVSVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 265 P~~~~d~~~~~~l~~~~~~~~--~ipIa~dEs-~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~ 340 (409)
|++.+|++++++|++ ++ .+||+.||. ++++.++++.++.+++|++++|++++| ++++++++++|+++|+.++
T Consensus 305 Pl~~~D~eg~~~Lt~----~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~i~iKvnqiGGITe~l~~a~lA~~~Gi~~i 380 (439)
T PTZ00081 305 PFDQDDWEAYAKLTA----AIGQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVNQIGTVTEAIEAAKLAQKNGWGVM 380 (439)
T ss_pred CCCcccHHHHHHHHH----hhCCCceEEcCCcccCCHHHHHHHHHhCCCCEEEeccccccCHHHHHHHHHHHHHcCCcEE
Confidence 999999999999986 45 799999997 678999999999999999999999998 9999999999999999999
Q ss_pred EccCC-chHHHHHHHHHHHccCCC
Q 015289 341 IGGMV-ETRLAMGFAGHLSAGLGC 363 (409)
Q Consensus 341 ~~~~~-es~i~~~~~~hlaaa~~~ 363 (409)
++++. ||. ..+.+|||.++++
T Consensus 381 ishrsgETe--d~~iadLAVa~~~ 402 (439)
T PTZ00081 381 VSHRSGETE--DTFIADLVVGLGT 402 (439)
T ss_pred EeCCCchhH--HHHHHHHHHHcCC
Confidence 96654 655 5677899998864
|
|
| >COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.4e-25 Score=195.16 Aligned_cols=274 Identities=21% Similarity=0.256 Sum_probs=207.5
Q ss_pred EEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHH-HHHHcCCCCCCHHH
Q 015289 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEA-CEVLKESPAMALGS 128 (409)
Q Consensus 50 ~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~-~~~l~g~~~~~~~~ 128 (409)
+.++|++.+|+....-.....+.+|++++|++. +++..||||..|+|+|+.|+.+.+-.+.... -.++.|..+.+
T Consensus 3 sa~lYry~iPmdsgviLR~r~Lk~RdGl~V~l~-~~~r~gwGEIaPLPgFSqETleqAq~~a~~wl~~W~~g~~~~d--- 78 (321)
T COG1441 3 SAQLYRYQIPMDAGVILRDRRLKTRDGLYVCLR-EGEREGWGEIAPLPGFSQETLEQAQEQALAWLNNWLAGHDPLD--- 78 (321)
T ss_pred ccceEEEecccccceeeehhhhcccccEEEEEe-eCCcccccccCCCCCcCHHHHHHHHHHHHHHHHHHHccCCccc---
Confidence 568999999999887777778889999999998 5789999999999999999887665443322 23444432221
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecC--CCHHHHHHHHHHHHHcCCCeEE
Q 015289 129 VFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI--VSPAEAAELASKYRKQGFTTLK 206 (409)
Q Consensus 129 ~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~--~~~~~~~~~~~~~~~~Gf~~~K 206 (409)
+.+++...++.||+-.+.+-... .|. |...|+ .+|+++......+ .|-+.-|
T Consensus 79 -----------~~~PSVAFGlScA~aEl~~~Lp~-------~~n------Y~~APLC~GDPDeL~~~L~~m--pGeKvAK 132 (321)
T COG1441 79 -----------PQMPSVAFGLSCALAELKGTLPE-------AAN------YRVAPLCTGDPDELYLKLADM--PGEKVAK 132 (321)
T ss_pred -----------ccCchhHHHHHHHHHHHhhhchh-------hcC------cccccCcCCCHHHHHHHHhcC--Ccceeee
Confidence 23466788999998776653211 111 223333 4788887665544 6889999
Q ss_pred EecC-CChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHh-CCCCCceeecCCCCCCHHHHHHhHHHhhcc
Q 015289 207 LKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE-MGVTPVLFEQPVHRDDWEGLGHVSHIAKDK 284 (409)
Q Consensus 207 iKvG-~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~-~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~ 284 (409)
+||| -...+|=-.+..+-++.||..|++|||.+|++..|.+|++..+. +.-++.|+||||..-+ .-++++ +.
T Consensus 133 vKVGlYEa~RDGmivnllLEaiPDL~LRLDANRaWtp~Ka~~FAkyV~p~~R~RIaFLEEPCkt~a--eSr~Fa----~e 206 (321)
T COG1441 133 VKVGLYEAVRDGMIVNLLLEAIPDLHLRLDANRAWTPLKAQQFAKYVNPDYRSRIAFLEEPCKTRA--ESRAFA----RE 206 (321)
T ss_pred eeeeeeeccccchHHHHHHHhCccceeeecccccCChHHHHHHHHhcCHHHHHHHHHHhcccCChH--HHHHHH----Hh
Confidence 9999 22345666677778889999999999999999999999998764 2224569999998532 234443 47
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccC
Q 015289 285 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGL 361 (409)
Q Consensus 285 ~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~ 361 (409)
++|.||.|||+... ||..--+ -.+..+.+||+.+| +.+..+.++.|+++|+..++++.+||++|....+.+|+-+
T Consensus 207 TgIAIAWDEs~rea-dF~~e~e-~gv~avVIKPTL~GSl~r~~eli~qAh~lGl~AVISSSiESSLGLtQLARiA~~l 282 (321)
T COG1441 207 TGIAIAWDESLREA-DFAFEAE-PGVRAVVIKPTLTGSLQRVRELVQQAHALGLTAVISSSIESSLGLTQLARIAAWL 282 (321)
T ss_pred cCeeEeecchhccc-ccccccC-CCceEEEecccchhhHHHHHHHHHHHHhcCceeEeechhhhhcCHHHHHHHHHHh
Confidence 89999999999874 4543233 34788999999999 8999999999999999999999999999999888888743
|
|
| >PF02746 MR_MLE_N: Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; InterPro: IPR013341 Mandelate racemase 5 | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.4e-23 Score=171.38 Aligned_cols=115 Identities=30% Similarity=0.509 Sum_probs=99.4
Q ss_pred eEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHcCCCCCCHH
Q 015289 49 QRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPAMALG 127 (409)
Q Consensus 49 ~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~~~~~ 127 (409)
++++++++.+|++ ||++|.++.+.++.++|||+|++|++||||+.+.+. +.+.. ...+.+ +.|.++|+++.+++
T Consensus 2 ~ev~v~~v~~~l~-Pf~~a~~t~~~~~~v~V~l~t~~G~~G~Ge~~~~~~-~~~~~---~~~~~~~l~~~l~g~~~~~~~ 76 (117)
T PF02746_consen 2 IEVRVRHVPLPLK-PFKTARGTVSEREFVLVRLETDDGVVGWGEAFPSPG-TAETV---ASALEDYLAPLLIGQDPDDIE 76 (117)
T ss_dssp EEEEEEEEEEEEE-EEEETTEEEEEEEEEEEEEEETTSEEEEEEEESSSS-SHHHH---HHHHHHTHHHHHTTSBTTGHH
T ss_pred EEEEEEEeccCcC-CEEeeCEEEEEeEEEEEEEEECCCCEEEEEeeCCcc-hhHHH---HHHHHHHHHHHHhcCCHHHHH
Confidence 5788999999999 999999999999999999999999999999998653 33333 233444 78999999999999
Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhC
Q 015289 128 SVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG 170 (409)
Q Consensus 128 ~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLG 170 (409)
.+++.+++...++ ..|++||||||||++||.+|+|+|+|||
T Consensus 77 ~~~~~~~~~~~~~--~~a~aaid~AlwDl~gK~~g~Pl~~LlG 117 (117)
T PF02746_consen 77 DIWQELYRLIKGN--PAAKAAIDMALWDLLGKIAGQPLYQLLG 117 (117)
T ss_dssp HHHHHHHHHTSSH--HHHHHHHHHHHHHHHHHHHTSBHHHHTT
T ss_pred HHHHHHHHhccch--HHHHHHHHHHHHHHHHHHcCCCHHHHcC
Confidence 9999998776653 5689999999999999999999999998
|
1.2.2 from EC (MR) and muconate lactonizing enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the N-terminal region of these proteins.; PDB: 2OX4_F 3T9P_A 2QQ6_A 3CYJ_C 3GY1_A 3S47_B 3RRA_B 3RR1_A 3STP_A 3T8Q_A .... |
| >PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-22 Score=166.88 Aligned_cols=106 Identities=25% Similarity=0.390 Sum_probs=96.2
Q ss_pred CCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceeccc
Q 015289 292 DESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLD 370 (409)
Q Consensus 292 dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~ 370 (409)
||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++ +++++.++++|++++++++.+.|+
T Consensus 1 gE~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~i~~aa~~hlaaa~~~~~~~e~- 78 (111)
T PF13378_consen 1 GESLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESGIGLAASLHLAAALPNCDWLEY- 78 (111)
T ss_dssp STTSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSHHHHHHHHHHHHTSTTBSEEEE-
T ss_pred CCCCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCcHHHHHHHHHHHhcCCCCcccc-
Confidence 799999999999999999999999999997 99999999999999999999999 999999999999999999988888
Q ss_pred cccccccCCCCC---CeeeeCcEEecCC-CCCcccc
Q 015289 371 TPLLLSEDPVLD---GYEVSGAVYKFTN-ARGHGGF 402 (409)
Q Consensus 371 ~p~~~~~d~~~~---~~~~~~G~i~~p~-~PGlG~~ 402 (409)
|++. +|++.+ ++. +||++.+|+ +||||+|
T Consensus 79 -~~~~-~dl~~~~~~p~~-~~G~v~vp~~~PGlGve 111 (111)
T PF13378_consen 79 -PYFE-EDLVTGPPEPLV-ENGRVTVPDDGPGLGVE 111 (111)
T ss_dssp -GGGT-HHSBSSSSSSEE-ETTEEEGGSSSSBTSBE
T ss_pred -cchh-hhhcCCCCCcee-ECCEEECCCCCCcccCC
Confidence 4433 566653 456 999999999 9999986
|
... |
| >COG0148 Eno Enolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.3e-17 Score=155.39 Aligned_cols=296 Identities=23% Similarity=0.318 Sum_probs=204.8
Q ss_pred eEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccC--C-------------ccCcccHHHHHHHH
Q 015289 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--P-------------HVTAEDQQTAMVKA 111 (409)
Q Consensus 47 kI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~--~-------------~~~~e~~~~~~~~~ 111 (409)
+|++|..+.+ -.|.| .+++-|+|.|++|..|.+-++.. + .|.+-.+..++..+
T Consensus 3 ~I~~i~aReI--------lDSRG----npTVEveV~~~~g~~g~a~vPSGAStG~~EavElrdgd~ry~gkGV~~AV~nV 70 (423)
T COG0148 3 AIEDVIAREI--------LDSRG----NPTVEVEVTLEDGFGGRAAVPSGASTGEHEAVELRDGDSRYLGKGVLKAVANV 70 (423)
T ss_pred ccceeEEEEE--------EcCCC----CceEEEEEEEcCCCcceeecCCCCCCCCceeEEecCCccccccccHHHHHHHH
Confidence 5777777765 23433 47899999999999998755421 1 12333455677777
Q ss_pred HH-HHHHHcCCCCCCHHHHHHHHHhhc----CCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCC-Ceee--eeeeec
Q 015289 112 SE-ACEVLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVS-NTIT--TDITIP 183 (409)
Q Consensus 112 ~~-~~~~l~g~~~~~~~~~~~~~~~~~----~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~-~~i~--~~~~i~ 183 (409)
++ +.|.|+|.+..+...+.+.|.+.- .++..+.++-|++||.--+.|..+|+|||++|||.. ..+| +...+.
T Consensus 71 n~~Iap~LiG~da~dQ~~ID~~lielDGT~Nks~lGaNailgVSlAvAkAAA~~l~~PLy~YlGG~~a~~lPvPm~Nvin 150 (423)
T COG0148 71 NEIIAPALIGLDATDQALIDSLLIELDGTENKSKLGANAILGVSLAVAKAAAASLGIPLYRYLGGLNALVLPVPMMNVIN 150 (423)
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHccCCCcccccccHHHHHHHHHHHHHHHHhcCCcHHHHhcCccccccccceeeeec
Confidence 65 689999999999888887775531 122235688999999999999999999999999974 3344 333222
Q ss_pred C--------------------CCHHHHH-------HHHHHH-HHcCCCeEEEecC------CChh---HHHHH-HHHHHh
Q 015289 184 I--------------------VSPAEAA-------ELASKY-RKQGFTTLKLKVG------KNLK---EDIEV-LRAIRA 225 (409)
Q Consensus 184 ~--------------------~~~~~~~-------~~~~~~-~~~Gf~~~KiKvG------~~~~---~d~~~-l~avr~ 225 (409)
. .+..+.. ...+++ .++|..+- +| ++++ +-++. ++++.+
T Consensus 151 GG~HA~n~~d~QEFmI~p~ga~sf~ealr~~~ev~h~lk~~l~~~g~~t~---vGDEGgfAP~l~~~eeald~i~~Aie~ 227 (423)
T COG0148 151 GGAHADNNLDIQEFMIMPVGAESFKEALRAGAEVFHHLKKLLKEKGLSTG---VGDEGGFAPNLKSNEEALDILVEAIEE 227 (423)
T ss_pred ccccCCCCccceeEEEeecChHHHHHHHHHHHHHHHHHHHHHhhcCcccc---ccCCcccCCCCCccHHHHHHHHHHHHH
Confidence 1 0111111 111111 22344333 33 3444 33343 456667
Q ss_pred hC--C--CcEEEEeCCC--------------CCCHHHHHHHHHHH-HhCCCCCceeecCCCCCCHHHHHHhHHHhhccCC
Q 015289 226 VH--P--DSSFILDANE--------------GYKPQEAVEVLEKL-YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG 286 (409)
Q Consensus 226 ~~--~--~~~l~vDaN~--------------~w~~~~A~~~~~~L-~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ 286 (409)
++ + ++.+.+|+.. .++.++-++++..| ++|++ ..||+|+..+||+++++|.+.+. -.
T Consensus 228 agy~~g~~i~~alD~Aasefy~~~~Y~~~~~~~~~~e~i~~~~~Lv~~Ypi--vsiEDpl~E~Dweg~~~lt~~~g--~k 303 (423)
T COG0148 228 AGYEPGEDIALALDVAASEFYKDGKYVLEGESLTSEELIEYYLELVKKYPI--VSIEDPLSEDDWEGFAELTKRLG--DK 303 (423)
T ss_pred hCCCCCcceeeeehhhhhhhccCCeeeecCcccCHHHHHHHHHHHHHhCCE--EEEcCCCCchhHHHHHHHHHhhC--Ce
Confidence 64 3 4788899732 34556767766555 67874 58999999999999999987321 12
Q ss_pred CeEEeCCC-CCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccC-CchHHHHHHHHHHHccCCC
Q 015289 287 VSVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGM-VETRLAMGFAGHLSAGLGC 363 (409)
Q Consensus 287 ipIa~dEs-~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~-~es~i~~~~~~hlaaa~~~ 363 (409)
+.|+.|.- ++++.-+++-++.++++.+.+|+.++| +|+++..+.+|+++|+..++++. .||.= ...+|||.++.+
T Consensus 304 vqivGDDLfvTN~~~l~~gi~~g~aNaiLIK~NQIGTLTEt~~ai~~A~~~gy~~viSHRSGETeD--~tIAdLAVa~~a 381 (423)
T COG0148 304 VQIVGDDLFVTNPKRLKKGIEKGAANAILIKPNQIGTLTETLEAINLAKDAGYTAVISHRSGETED--TTIADLAVATNA 381 (423)
T ss_pred EEEECCcceecCHHHHHHHHHhccCceEEEechhcccHHHHHHHHHHHHHCCCeEEEecCCCCccc--chHHHHHHHhCC
Confidence 67888774 888899999999999999999999999 99999999999999999998764 35443 345688877754
|
|
| >PRK08350 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.4e-17 Score=155.94 Aligned_cols=281 Identities=15% Similarity=0.171 Sum_probs=197.7
Q ss_pred eEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCC---ccCcccHHHHHHHHHH-HHHHHcCCC
Q 015289 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP---HVTAEDQQTAMVKASE-ACEVLKESP 122 (409)
Q Consensus 47 kI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~---~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (409)
+|++|..+.+ -.|+| .+++-|+|+|++| .|.+-++... .|. -.+..++..+++ +.|.|+|.+
T Consensus 3 ~I~~i~aReI--------lDSRG----nPTVEveV~~~~g-~gra~vPSD~d~~ry~-~gV~~AV~nVn~~Iap~LiG~d 68 (341)
T PRK08350 3 VIENIIGRVA--------VLRGG----KYSVEVDVITDSG-FGRFAAPIDENPSLYI-AEAHRAVSEVDEIIGPELIGFD 68 (341)
T ss_pred eeEEEEEEEE--------EcCCC----CceEEEEEEECCc-EEEEEecCCCCccccc-chHHHHHHHHHHHHHHHHcCCC
Confidence 7888888775 24444 4789999999999 7877776521 233 345567777765 789999999
Q ss_pred CCCHHHHHHHHHhhc----CCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeee--eeeecCCC------HHH
Q 015289 123 AMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITT--DITIPIVS------PAE 189 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~----~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~--~~~i~~~~------~~~ 189 (409)
+.+...+.+.|-+.- .+...+.++-|+.||..-+.|..+|+|||++|||. ...+|+ ...+...+ |.+
T Consensus 69 ~~dQ~~ID~~mielDGT~nKs~lGaNAiLavS~A~akAaA~~~~~PLy~ylgg~~~~~lPvP~~NiiNGG~~EFmI~p~e 148 (341)
T PRK08350 69 ASEQELIDSYLWEIDGTEDFSHIGANTALAVSVAVAKAAANSKNMPLYSYIGGTFTTELPVPILEFAEDENFEYYVLVRD 148 (341)
T ss_pred HHHHHHHHHHHHhccCCccccccCchhhHHHHHHHHHHHHHHcCCcHHHHhcCCCCCccCccceeeecCCceEEEECchH
Confidence 999888888775421 11122457899999999999999999999999884 344444 32332211 222
Q ss_pred HHHHHHHHHHcCCCeEEEecCCChhHHHHH-HHHHHhhC--C--CcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeec
Q 015289 190 AAELASKYRKQGFTTLKLKVGKNLKEDIEV-LRAIRAVH--P--DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 264 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~-l~avr~~~--~--~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEe 264 (409)
..+- .+-|+.+|=-+-.+.++-++. ++++.++| + |+.+.+|+...+|.++.+ +.+++|++ .+||
T Consensus 149 a~~~-----~ev~~~lk~il~~~~eeaL~ll~eAi~~aGy~~g~dv~~~lD~~~~~t~~eli---~l~~kYPI--vsIE- 217 (341)
T PRK08350 149 LMEI-----TDVVDAVNKILENSKEVSLEGLSKASEKAGDELGLEVALGIAQKREMETEKVL---NLVEDNNI--AYIK- 217 (341)
T ss_pred hhhh-----HHHHHHHHHHHhhChHHHHHHHHHHHHHhCCCccccEEEeeccCCCCCHHHHH---HHHHHCCE--EEEE-
Confidence 2221 122333431111144555665 46777774 2 588999997558888765 77889986 6999
Q ss_pred CCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEcc
Q 015289 265 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG 343 (409)
Q Consensus 265 P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~ 343 (409)
|+..+ ++++++++. ...+.|..|.-..+-... +.++++.+.+|+.++| ++++++.+.+|+++|+.+++++
T Consensus 218 p~~E~--~gw~~lt~~---g~~iqiVGDDLfvTN~~~----~~~~~NaiLiK~NQIGTltEt~~ai~~A~~~g~~~vvSH 288 (341)
T PRK08350 218 PIGDE--ELFLELIAG---THGVFIDGEYLFRTRNIL----DRRYYNALSIKPINLGTLTDLYNLVNDVKSERITPILAE 288 (341)
T ss_pred cCCcc--hHHHHHHhc---CCceEEEcccccccChhH----hhCccceEEEeeccceeHHHHHHHHHHHHHcCCeEEeec
Confidence 99965 999999862 245889988864444332 8899999999999999 9999999999999999998866
Q ss_pred C-CchHHHHHHHHHHHccCCC
Q 015289 344 M-VETRLAMGFAGHLSAGLGC 363 (409)
Q Consensus 344 ~-~es~i~~~~~~hlaaa~~~ 363 (409)
. -||. -.+.+|||.++++
T Consensus 289 RSGETe--D~~IAdLaVa~~a 307 (341)
T PRK08350 289 AKYESA--DEALPHLAVGLRC 307 (341)
T ss_pred CCCCCc--chhHHHHHHHhCC
Confidence 4 3554 3466788887754
|
|
| >PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5 | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.9e-16 Score=117.58 Aligned_cols=66 Identities=32% Similarity=0.582 Sum_probs=60.7
Q ss_pred HHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeC
Q 015289 219 VLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD 292 (409)
Q Consensus 219 ~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~d 292 (409)
||+++|+. ||++.|++|+|++||.++|+++++.|+++ .|||||++++|++++++|++ ++++||++|
T Consensus 1 ri~avr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~----~~iEeP~~~~d~~~~~~l~~----~~~~pia~d 67 (67)
T PF01188_consen 1 RIRAVREAVGPDIDLMVDANQAWTLEEAIRLARALEDY----EWIEEPLPPDDLDGLAELRQ----QTSVPIAAD 67 (67)
T ss_dssp HHHHHHHHHSTTSEEEEE-TTBBSHHHHHHHHHHHGGG----SEEESSSSTTSHHHHHHHHH----HCSSEEEES
T ss_pred CHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHcChh----heeecCCCCCCHHHHHHHHH----hCCCCEEeC
Confidence 68999998 99999999999999999999999999995 39999999999999999975 689999987
|
1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C .... |
| >PTZ00378 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.6e-14 Score=141.22 Aligned_cols=296 Identities=17% Similarity=0.173 Sum_probs=195.8
Q ss_pred eeeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCce-----EEEEeccCC------cc-CcccHHHHHHHH
Q 015289 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCV-----GWGEAPVLP------HV-TAEDQQTAMVKA 111 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~-----G~GE~~~~~------~~-~~e~~~~~~~~~ 111 (409)
..+.|++|..+.+- .|.| .+++-|+|++++|.. -.||+..+. +| .+..+..++.
T Consensus 47 ~~~~I~~i~areIl--------DSrG----nPTVev~v~l~~G~~vPSGAStGEA~elRDgd~~~~~g~gkgV~~Av~-- 112 (518)
T PTZ00378 47 SGDEIRALVHNEVL--------SPAG----ETVLRFTLELLNGMEVSSGALLSPSHGERDGEADATLDPAEYTTEALQ-- 112 (518)
T ss_pred CCCeeeEEEEEEEE--------cCCC----CeeEEEEEEECCCCEECCCCcccceeeeecCCcccccCCCccHHHHHH--
Confidence 34668999888762 3333 467888899998843 011444221 12 2233334443
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHhhc----CCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC--------CCeeeee
Q 015289 112 SEACEVLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV--------SNTITTD 179 (409)
Q Consensus 112 ~~~~~~l~g~~~~~~~~~~~~~~~~~----~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~--------~~~i~~~ 179 (409)
+.+.|.|+|.++.+...+.+.|.+.- ..+..+.++-|+.||+.-+.|+..++|||++|++. ...+|+.
T Consensus 113 ~~i~p~Lig~~~~dQ~~iD~~Li~lDGT~nks~lGaNailavS~A~akAAA~~~~~PLy~yL~~~~~~~~~~~~~~lP~P 192 (518)
T PTZ00378 113 NSYFPRLLQLGARDQREFDSTLRAALSTSPLANVGSAVQWALSIVASLAAARCRSVPLFQYLRALFGSLTSVETFSMPQL 192 (518)
T ss_pred hhhHHHHcCCChHhHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHhhccccccccCCCcccCcc
Confidence 45889999999999888877775432 12223568999999999999999999999999873 1234432
Q ss_pred --eee------------------cC----CCHHHHHHHHH---HHHHcCCCeEEEecC-------C---ChhHHHHH-HH
Q 015289 180 --ITI------------------PI----VSPAEAAELAS---KYRKQGFTTLKLKVG-------K---NLKEDIEV-LR 221 (409)
Q Consensus 180 --~~i------------------~~----~~~~~~~~~~~---~~~~~Gf~~~KiKvG-------~---~~~~d~~~-l~ 221 (409)
..+ |. .+..+..+... ..+..|+. .-+| + +.++-++. .+
T Consensus 193 ~~NiinGG~HA~n~l~iQEFmI~P~ga~g~s~~ealr~~~evyh~L~~~~~---t~vGDEGGfaap~~~~~eeAL~li~e 269 (518)
T PTZ00378 193 CITFFGPGNPSTARLALKSVLFSPVMPSGTVLRERMQKIFAAFHHFCQSHN---SSVRSDGSLHWDGFANLTDAVKLATE 269 (518)
T ss_pred ceEeecCccCCCCCCCceEEEEeeCCCCCCCHHHHHHHHHHHHHHHhhccc---CccCCCcCcCCCCCCCHHHHHHHHHH
Confidence 111 11 12222222111 11112321 1222 1 23344454 35
Q ss_pred HHHhhC--C--CcEEEEeCC--CC--------------------------------CCHHHHHHHHHH-HHhCC--CCCc
Q 015289 222 AIRAVH--P--DSSFILDAN--EG--------------------------------YKPQEAVEVLEK-LYEMG--VTPV 260 (409)
Q Consensus 222 avr~~~--~--~~~l~vDaN--~~--------------------------------w~~~~A~~~~~~-L~~~~--l~~~ 260 (409)
+|++++ | ++.|.+|+- +- .|.+|.+++.+. +++|+ + .
T Consensus 270 Ai~~aGy~pG~dI~iglD~AASef~~~~~~~~~~~~y~~~k~~~e~~Y~l~~~~~~~t~~elieyy~~li~kYP~iI--v 347 (518)
T PTZ00378 270 ALRAVQLTPGTDVCLGLRMAASTTRVPATAVADGGAWKEAKDDCEVLYSLFPGEPDVTGDQLSEYVREQLQAVPDIV--V 347 (518)
T ss_pred HHHHhCCCCCCeEEEEEecccccccccccccccchhhccccCCCceeeeecCCCCCCCHHHHHHHHHHHHHHCCCce--E
Confidence 667764 3 477777742 11 346777777665 46786 4 5
Q ss_pred eeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCC-CC-CHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCC
Q 015289 261 LFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADES-CR-SLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGL 337 (409)
Q Consensus 261 ~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs-~~-~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi 337 (409)
+||+|+..+||+++++|++.+. -.+.|..|.- ++ ++.-+++.++.+.++.+.+|++++| ++++++.+.+|+++|.
T Consensus 348 sIEDp~~E~D~~gw~~lt~~lG--~~iqivGDDL~vT~n~~ri~~gi~~~~~NaiLIK~NQIGTlSEtieav~lA~~~g~ 425 (518)
T PTZ00378 348 YVEDTHCDEDTFGLQRLQAALG--DSIVLSGVDVYARSEYKKVESGLRGLWTSNIVLNPCAIGTLSDVVEIVRAVGEDEG 425 (518)
T ss_pred EEecCCCchHHHHHHHHHHHhC--CeEEEECCCcCcCCCHHHHHHHHhcCCCceEEEccccceeHHHHHHHHHHHHHcCC
Confidence 8999999999999999997542 2478888865 55 5889999999999999999999999 9999999999999999
Q ss_pred cEE---EccCCchHHHHHHHHHHHccCCC
Q 015289 338 NLM---IGGMVETRLAMGFAGHLSAGLGC 363 (409)
Q Consensus 338 ~~~---~~~~~es~i~~~~~~hlaaa~~~ 363 (409)
.++ +++. |+ .-...+|||.+++.
T Consensus 426 ~~v~v~vShR--SG-eD~~IAdLAVa~ga 451 (518)
T PTZ00378 426 RAVTVLVQTL--AG-NAATAAHLAVAMGA 451 (518)
T ss_pred cEEccccCCC--cC-CccHHHHHHHHcCC
Confidence 997 6553 23 45677889888753
|
|
| >COG3799 Mal Methylaspartate ammonia-lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-13 Score=127.43 Aligned_cols=285 Identities=17% Similarity=0.217 Sum_probs=191.5
Q ss_pred eeEEEEEEEECCCceEEEEeccCCccCcc----cH---HHHHHHHH-HHHHHHcCCCCCCHHHHHHHHHhhcCCChh-hH
Q 015289 74 VENVAIRIELSNGCVGWGEAPVLPHVTAE----DQ---QTAMVKAS-EACEVLKESPAMALGSVFGVVAGLLPGHQF-AS 144 (409)
Q Consensus 74 ~~~~iVrl~td~G~~G~GE~~~~~~~~~e----~~---~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~g~~~-~~ 144 (409)
.+++-|.+..++|.+-||.|...- |++. .+ +.....++ .+.|+|+|++....-+....+.....++.+ .+
T Consensus 50 ge~lsv~lvLsdg~vv~GdcaaVQ-YSGAGgRDpLF~a~~~~~~~~~~v~p~LvgrDv~~~ldnA~vfe~l~d~~~LhtA 128 (410)
T COG3799 50 GECLSVQLVLSDGAVVVGDCAAVQ-YSGAGGRDPLFLAEHFIPFLNDHVKPLLVGRDVDAFLDNARVFEKLIDGNLLHTA 128 (410)
T ss_pred cceeeEEEEEecCceeeccceeeE-ecCCCCCCchhhhhhhHHHHhhhhhhhhhCccHHhhcchhHHhHhhccCCcchHH
Confidence 468888999999999999987532 1111 11 12222333 368999999876544333222223333332 45
Q ss_pred HHHHHHHHHHHHHHhhcCCchHHHhCCC------CCeeeeeeeecCC---CHHHHHHHHH---------HHHHcCCCeEE
Q 015289 145 VRAAVEMALIDAVAKSVSMPLWRLFGGV------SNTITTDITIPIV---SPAEAAELAS---------KYRKQGFTTLK 206 (409)
Q Consensus 145 a~said~AlwDl~gk~~g~Pl~~LLGg~------~~~i~~~~~i~~~---~~~~~~~~~~---------~~~~~Gf~~~K 206 (409)
.+.++..||.|+.+...+.--.+.+-.. ..+||+|...+.. ..+.|.-..- ...+-||...|
T Consensus 129 vrYGvSQALl~Aaa~a~~tt~tevvcde~~lp~~te~vP~fgQSGd~R~~~vdkMiLK~vdVLPHgLiNsve~~G~dG~~ 208 (410)
T COG3799 129 VRYGVSQALLDAAALATGTTKTEVVCDEWQLPRVTESVPLFGQSGDDRYIAVDKMILKGVDVLPHGLINSVEELGFDGEK 208 (410)
T ss_pred HHhhHHHHHHHHHHHhhccchheeehhhhCCCCccccccccccCcchhhhhHHHHHHhhcCccchhhhhhHHHhCCchHH
Confidence 7899999999999888776655544322 2356766543321 1122211111 11123343333
Q ss_pred EecCCChhHHHHHHHHHHhhCCCcEEEEeCCC------CCCHHHHHHHHHHHHhC--CCCCceeecCCCC----CCHHHH
Q 015289 207 LKVGKNLKEDIEVLRAIRAVHPDSSFILDANE------GYKPQEAVEVLEKLYEM--GVTPVLFEQPVHR----DDWEGL 274 (409)
Q Consensus 207 iKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~------~w~~~~A~~~~~~L~~~--~l~~~~iEeP~~~----~d~~~~ 274 (409)
+.- -++|-.+|...++.-+..-.|-+|..+ ++++.....++..|++. ++ +++||-|+.. .+++.|
T Consensus 209 l~E--yv~Wls~R~~~~g~~gYhP~lH~DVYG~iGe~fg~dp~r~a~yi~~l~~~a~~~-pL~IEgP~DaGs~~aQI~~~ 285 (410)
T COG3799 209 LRE--YVRWLSDRILSKGTSGYHPTLHIDVYGTIGEIFGMDPLRCAQYIASLEKEAQGL-PLYIEGPVDAGSKPAQIRLL 285 (410)
T ss_pred HHH--HHHHHHHHHHhcCCCCCCccEEEeehhhhHHHhCCCHHHHHHHHHHHHhhCCCC-ceeeeccccCCCCHHHHHHH
Confidence 221 123444444443333444578899876 36777777888888753 44 5699999984 457778
Q ss_pred HHhHHHh-hccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEcc-CCchHHHH
Q 015289 275 GHVSHIA-KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG-MVETRLAM 351 (409)
Q Consensus 275 ~~l~~~~-~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~-~~es~i~~ 351 (409)
+++.+.+ +..+++.|..||.|.+.+|+..+.++++++.+|+|..-+| +.+..+.+.+|+.+.+....|+ +.||.++.
T Consensus 286 a~i~~~L~~~Gs~v~IVaDEwCnt~~Di~~F~dA~a~h~VQiKTPDvGsi~~~~rAvlyC~~~~~~AYvGGtCnETdvSA 365 (410)
T COG3799 286 AAITKELTRLGSGVKIVADEWCNTYQDIVDFTDAAACHMVQIKTPDVGSIHNIVRAVLYCNSHSMEAYVGGTCNETDVSA 365 (410)
T ss_pred HHHHHHHhhcCCcceEeehhhcccHHHHHHHHhhccccEEEecCCCcchHHHHHHHHhhhccCccceeecccccccchhh
Confidence 8877755 4567899999999999999999999999999999999999 9999999999999999988866 57999999
Q ss_pred HHHHHHHccCC
Q 015289 352 GFAGHLSAGLG 362 (409)
Q Consensus 352 ~~~~hlaaa~~ 362 (409)
..++|++.+..
T Consensus 366 r~cvHValAt~ 376 (410)
T COG3799 366 RTCVHVALATR 376 (410)
T ss_pred hhhhhhhhhhc
Confidence 99999987653
|
|
| >KOG2670 consensus Enolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.3e-12 Score=117.48 Aligned_cols=280 Identities=18% Similarity=0.260 Sum_probs=183.3
Q ss_pred eeEEEEEEEECCCce----------EEEEeccC-----CccCcccHHHHHHHHHH-HHHHHcCC--CCCCHHHHHHHHHh
Q 015289 74 VENVAIRIELSNGCV----------GWGEAPVL-----PHVTAEDQQTAMVKASE-ACEVLKES--PAMALGSVFGVVAG 135 (409)
Q Consensus 74 ~~~~iVrl~td~G~~----------G~GE~~~~-----~~~~~e~~~~~~~~~~~-~~~~l~g~--~~~~~~~~~~~~~~ 135 (409)
.+++-|.++|+.|+. |.=|+-.+ ..|.+..+..++..+++ +.|.+++. ++.+...+.+.|..
T Consensus 17 nPTVEVdL~T~~G~fRaavPSGAStGi~EAlELrDgdK~~y~GkgV~kaV~niN~~i~pali~~~~dv~~Q~~iD~~mi~ 96 (433)
T KOG2670|consen 17 NPTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSKYMGKGVLKAVGNINNTIAPALIKKNLDVTDQKAIDNFMIE 96 (433)
T ss_pred CCceeEEEEecCcceEeecCCCCccchhhhhheecCCcceecchhHHHHHHHHHHHHHHHHHccCCChhhHHHHHHHHHh
Confidence 478899999998832 33333211 12444556666666765 68999987 66666777666653
Q ss_pred hc----CCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCC---CCC--eeee--eeeecCC-------------------
Q 015289 136 LL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG---VSN--TITT--DITIPIV------------------- 185 (409)
Q Consensus 136 ~~----~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg---~~~--~i~~--~~~i~~~------------------- 185 (409)
.- .+...+.|+-|+.+|..-+-|-..|+|||+.+.+ ..+ -+|+ ...+...
T Consensus 97 LDGTeNKsklGaNaIlgvSlavckagAa~k~vplykhia~lag~~~~~vlPVPaFNVlNGGsHAGn~lAmQEfMIlP~ga 176 (433)
T KOG2670|consen 97 LDGTENKSKLGANAILGVSLAVCKAGAAEKGVPLYKHIADLAGNKQPYVLPVPAFNVLNGGSHAGNKLAMQEFMILPVGA 176 (433)
T ss_pred ccCCcccccccchhhHHHHHHHHhhhhhhcCCcHHHHHHHhcCCCCceEecccceeeecCCccccchhhhhhheecccCc
Confidence 21 1111256899999999999999999999988753 232 2343 3222111
Q ss_pred -CHHHHHH-------HHHHHHHcCCCeEEEecC------CCh---hHHHHHH-HHHHhhC--CCcEEEEeCCC-------
Q 015289 186 -SPAEAAE-------LASKYRKQGFTTLKLKVG------KNL---KEDIEVL-RAIRAVH--PDSSFILDANE------- 238 (409)
Q Consensus 186 -~~~~~~~-------~~~~~~~~Gf~~~KiKvG------~~~---~~d~~~l-~avr~~~--~~~~l~vDaN~------- 238 (409)
+.++..+ -.+...+.-|..---.|| +++ ++-++.+ .+++.++ .++.|-+|...
T Consensus 177 ~sf~eamr~GsevYh~LK~vik~kyG~~a~nVGDEGGfAPnI~~~~E~L~Li~~Ai~kagyt~kikIgmDvAaseF~~dg 256 (433)
T KOG2670|consen 177 DSFAEAMRMGSEVYHHLKSVIKEKYGADATNVGDEGGFAPNIQTNEEALDLIKEAINKAGYTGKVKIGMDVAASEFYKDG 256 (433)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHhCccccccccccCcCCCccchHHHHHHHHHHHHhcCCCCceEEEEeechhhhhcCC
Confidence 1111111 111112222222222344 333 3444443 4666664 46888888522
Q ss_pred C---------------CCHHHHHHHH-HHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCC-CCCCHHHH
Q 015289 239 G---------------YKPQEAVEVL-EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDV 301 (409)
Q Consensus 239 ~---------------w~~~~A~~~~-~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dE-s~~~~~~~ 301 (409)
. ++.++..++. .-+++|.+ .-||+|+..|||+.+..+.. ..++.|..|. .++++..+
T Consensus 257 kYDLdfk~~~~d~s~~~s~~~L~dlY~~~~k~yPi--vSiEDPFdqdDw~~w~~~~~----~~~iqiVgDDLtvTnpkri 330 (433)
T KOG2670|consen 257 KYDLDFKSPNSDPSRWLSGDQLADLYKSFIKDYPI--VSIEDPFDQDDWEAWSKFFK----EVGIQIVGDDLTVTNPKRI 330 (433)
T ss_pred cccccCcCCCCCcccccCHHHHHHHHHHHHhcCCe--eeecCCcchhhHHHHHHHhh----ccceEEecCcccccCHHHH
Confidence 1 3556655544 44678875 59999999999999999864 4789998876 68999999
Q ss_pred HHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccC-CchHHHHHHHHHHHccC
Q 015289 302 KKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGM-VETRLAMGFAGHLSAGL 361 (409)
Q Consensus 302 ~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~-~es~i~~~~~~hlaaa~ 361 (409)
++.++..+|+.+.+|+.++| ++++++.+.+|++.|..+|+++. -||.= .+.++|..++
T Consensus 331 ~~Ai~~k~cN~LLlKvNQIGtvtEsiea~~~a~~~gwgvmvSHRSGETeD--tFIaDL~VGl 390 (433)
T KOG2670|consen 331 ATAIEEKACNALLLKVNQIGTVTESIEAAKLARSAGWGVMVSHRSGETED--TFIADLVVGL 390 (433)
T ss_pred HHHHHHhhccceEeeccccccHHHHHHHHHHHHhcCceEEEeccCCCccc--chHHHhhhhh
Confidence 99999999999999999999 99999999999999999998764 34432 2445565554
|
|
| >PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4 | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.6e-11 Score=109.10 Aligned_cols=161 Identities=20% Similarity=0.371 Sum_probs=108.8
Q ss_pred cC-CCeEEEecCCChhHHHHHHHHH----HhhC-C--CcEEEEeCCCCC------CHHHHHHHHHHHHhC--CCCCceee
Q 015289 200 QG-FTTLKLKVGKNLKEDIEVLRAI----RAVH-P--DSSFILDANEGY------KPQEAVEVLEKLYEM--GVTPVLFE 263 (409)
Q Consensus 200 ~G-f~~~KiKvG~~~~~d~~~l~av----r~~~-~--~~~l~vDaN~~w------~~~~A~~~~~~L~~~--~l~~~~iE 263 (409)
.| |..++ |+|.+-+.-.+.++-+ ++.+ + .-.|.+|..+.. +++....++..|++. ++ ...||
T Consensus 33 H~linnve-klG~~Ge~L~eYv~Wl~~Ri~~lg~~~Y~P~lHiDVYGtiG~~f~~d~~~~adYl~~l~~aA~P~-~L~iE 110 (248)
T PF07476_consen 33 HALINNVE-KLGPDGEKLLEYVKWLKDRIRELGDEDYRPVLHIDVYGTIGLAFDNDPDRMADYLAELEEAAAPF-KLRIE 110 (248)
T ss_dssp ETT---CC-CC-TTSHHHHHHHHHHHHHHHHHSSTT---EEEEE-TTHHHHHTTT-HHHHHHHHHHHHHHHTTS--EEEE
T ss_pred hHhhhCHH-HhCcchHHHHHHHHHHHHHHHHhcCCCCCccEEEEccchHHHHhCCCHHHHHHHHHHHHHhcCCC-eeeee
Confidence 45 78888 9996544444433322 3333 3 357899998742 577777788888752 33 25999
Q ss_pred cCCCCCC----HHHHHHhHHHh-hccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCC
Q 015289 264 QPVHRDD----WEGLGHVSHIA-KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGL 337 (409)
Q Consensus 264 eP~~~~d----~~~~~~l~~~~-~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi 337 (409)
.|+...+ ++.+++|++.+ ++.+++.|.+||.|.+++|++.+.+++++|.+|+|..-+| +..+.+.+-+|+++|+
T Consensus 111 gP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A~dmVQIKtPDLGgi~ntieAvlyCk~~gv 190 (248)
T PF07476_consen 111 GPMDAGSREAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKAADMVQIKTPDLGGINNTIEAVLYCKEHGV 190 (248)
T ss_dssp -SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-SSEEEE-GGGGSSTHHHHHHHHHHHHTT-
T ss_pred CCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCCcCEEEecCCCccchhhHHHHHHHHHhcCC
Confidence 9998654 67788887755 3567799999999999999999999999999999999998 9999999999999999
Q ss_pred cEEEcc-CCchHHHHHHHHHHHccCC
Q 015289 338 NLMIGG-MVETRLAMGFAGHLSAGLG 362 (409)
Q Consensus 338 ~~~~~~-~~es~i~~~~~~hlaaa~~ 362 (409)
....|+ +.||..+...++|+|.|..
T Consensus 191 gaY~GGtCNETd~SArv~~hvalAt~ 216 (248)
T PF07476_consen 191 GAYLGGTCNETDRSARVCVHVALATR 216 (248)
T ss_dssp EEEE---TTS-HHHHHHHHHHHHHCT
T ss_pred ceeecccccccchhHHHHHHHHHhcC
Confidence 999876 5799999999999998765
|
3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A. |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=99.08 E-value=2e-09 Score=106.64 Aligned_cols=121 Identities=22% Similarity=0.369 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHcCCCeEEEecCC------------ChhH-------------HHHHHHHHHhh-CCCcEEEEeCC-----
Q 015289 189 EAAELASKYRKQGFTTLKLKVGK------------NLKE-------------DIEVLRAIRAV-HPDSSFILDAN----- 237 (409)
Q Consensus 189 ~~~~~~~~~~~~Gf~~~KiKvG~------------~~~~-------------d~~~l~avr~~-~~~~~l~vDaN----- 237 (409)
++++.++++++.||..|+|+.+. +... ..+.+++||+. ++++.|.+|.|
T Consensus 155 ~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~ 234 (336)
T cd02932 155 AFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWV 234 (336)
T ss_pred HHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccC
Confidence 34666777888999999999752 2223 38999999997 78999999955
Q ss_pred -CCCCHHHHHHHHHHHHhCCCCCceee-----------cCC-CCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHH
Q 015289 238 -EGYKPQEAVEVLEKLYEMGVTPVLFE-----------QPV-HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 304 (409)
Q Consensus 238 -~~w~~~~A~~~~~~L~~~~l~~~~iE-----------eP~-~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~ 304 (409)
++|+.++++++++.|+++++. ||| .|+ +.++.+.++++++ .+++||++++.+.+++++.++
T Consensus 235 ~~g~~~~e~~~ia~~Le~~gvd--~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~----~~~iPVi~~G~i~t~~~a~~~ 308 (336)
T cd02932 235 EGGWDLEDSVELAKALKELGVD--LIDVSSGGNSPAQKIPVGPGYQVPFAERIRQ----EAGIPVIAVGLITDPEQAEAI 308 (336)
T ss_pred CCCCCHHHHHHHHHHHHHcCCC--EEEECCCCCCcccccCCCccccHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHH
Confidence 889999999999999999874 999 466 3445666666654 678999999999999999999
Q ss_pred HHcCCCCEEEe
Q 015289 305 VKGNLADVINI 315 (409)
Q Consensus 305 i~~~a~div~~ 315 (409)
++.+.+|+|++
T Consensus 309 l~~g~aD~V~~ 319 (336)
T cd02932 309 LESGRADLVAL 319 (336)
T ss_pred HHcCCCCeehh
Confidence 99999999854
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.6e-09 Score=97.65 Aligned_cols=143 Identities=21% Similarity=0.306 Sum_probs=118.8
Q ss_pred HHHhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCC----------------ChhHHHHHHHHHHhhCCC
Q 015289 166 WRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVHPD 229 (409)
Q Consensus 166 ~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~d~~~l~avr~~~~~ 229 (409)
..+++......|+..++...+++++.+.++.+.+.||..+++++|. +++...+.++++|+..+
T Consensus 45 ~~~~~~~~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~- 123 (231)
T cd02801 45 LRLLTRNPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVP- 123 (231)
T ss_pred HHhhccCccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC-
Confidence 3445545567788888888899999998888888899999999873 56677888999998744
Q ss_pred cEEEEeCCCCCCHH-HHHHHHHHHHhCCCCCcee-------ec-CCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHH
Q 015289 230 SSFILDANEGYKPQ-EAVEVLEKLYEMGVTPVLF-------EQ-PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD 300 (409)
Q Consensus 230 ~~l~vDaN~~w~~~-~A~~~~~~L~~~~l~~~~i-------Ee-P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~ 300 (409)
..+.++.|.+|+.+ ++.++++.+++.++. +| ++ +..+.+++.++++++ ..++||.++..+.+.++
T Consensus 124 ~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd--~i~v~~~~~~~~~~~~~~~~~~~~i~~----~~~ipvi~~Ggi~~~~d 197 (231)
T cd02801 124 IPVTVKIRLGWDDEEETLELAKALEDAGAS--ALTVHGRTREQRYSGPADWDYIAEIKE----AVSIPVIANGDIFSLED 197 (231)
T ss_pred CCEEEEEeeccCCchHHHHHHHHHHHhCCC--EEEECCCCHHHcCCCCCCHHHHHHHHh----CCCCeEEEeCCCCCHHH
Confidence 77899999999876 889999999999875 78 76 666668887777754 67899999999999999
Q ss_pred HHHHHHcCCCCEEEe
Q 015289 301 VKKIVKGNLADVINI 315 (409)
Q Consensus 301 ~~~~i~~~a~div~~ 315 (409)
+.++++.+.+|.+++
T Consensus 198 ~~~~l~~~gad~V~i 212 (231)
T cd02801 198 ALRCLEQTGVDGVMI 212 (231)
T ss_pred HHHHHHhcCCCEEEE
Confidence 999999877899876
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-09 Score=104.59 Aligned_cols=165 Identities=20% Similarity=0.399 Sum_probs=108.5
Q ss_pred CCCHHHHHHHHHHH-HHcCCCeEEEecCCChhHHHHHHHHHHhhC--CCcEEEEeCCC-------CCCHHHHHHHHHH-H
Q 015289 184 IVSPAEAAELASKY-RKQGFTTLKLKVGKNLKEDIEVLRAIRAVH--PDSSFILDANE-------GYKPQEAVEVLEK-L 252 (409)
Q Consensus 184 ~~~~~~~~~~~~~~-~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~--~~~~l~vDaN~-------~w~~~~A~~~~~~-L 252 (409)
+.++++..+.+.++ .+.||.. +++++-|.... +.+ .+-+..++... ..|.++.+++... +
T Consensus 76 ~~~~eeaL~ll~~Ai~~aGy~~-~v~ialD~AAs--------efyd~~~gkY~~~~~~~~~~~~~~~s~delid~y~~li 146 (295)
T PF00113_consen 76 IDDNEEALDLLMEAIKEAGYEP-DVAIALDVAAS--------EFYDEEDGKYDLEFKSKEKDPSRYKSSDELIDYYKDLI 146 (295)
T ss_dssp BSSHHHHHHHHHHHHHHTT-TT-TBEEEEE--GG--------GGEETETTEEETTTTSSSSTGGGEEEHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHccccc-eeeeeccccHH--------HhhhccCCeEEEeecccccccccccCHHHHHHHHHHHH
Confidence 45666666655444 3468776 77766433211 112 12233333322 3678888887555 5
Q ss_pred HhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHH
Q 015289 253 YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIE 330 (409)
Q Consensus 253 ~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dE-s~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~ 330 (409)
++|++ ..||+|+..+||+++++|++.+.. .+-|..|. .++++..+++.++.++++.+.+|+.++| ++++++++.
T Consensus 147 ~~YPI--vsIEDpf~edD~e~w~~lt~~~g~--~~~iVGDDl~vTn~~ri~~~i~~~~~na~llK~NQigTvte~lea~~ 222 (295)
T PF00113_consen 147 KKYPI--VSIEDPFDEDDWEGWAKLTKRLGD--KIQIVGDDLFVTNPKRIKKGIEKKACNALLLKPNQIGTVTETLEAVK 222 (295)
T ss_dssp HHS-E--EEEESSS-TT-HHHHHHHHHHHTT--TSEEEESTTTTT-HHHHHHHHHCT--SEEEE-HHHHSSHHHHHHHHH
T ss_pred HhcCe--EEEEccccccchHHHHHHHHhhhc--ceeeecccccccchhhhhccchhhhccchhhhhhhhHHHHHHHHHHH
Confidence 78985 699999999999999999974422 38888887 5788899999999999999999999999 999999999
Q ss_pred HHHHcCCcEEEccCC-chHHHHHHHHHHHccCCC
Q 015289 331 VVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGC 363 (409)
Q Consensus 331 ~A~~~gi~~~~~~~~-es~i~~~~~~hlaaa~~~ 363 (409)
+|+++|+.+++++.. ||. -.+.+|||.+++.
T Consensus 223 ~a~~~g~~~vvS~rsgEte--D~~iadLaVg~~a 254 (295)
T PF00113_consen 223 LAKSAGWGVVVSHRSGETE--DTFIADLAVGLGA 254 (295)
T ss_dssp HHHHTT-EEEEE--SS--S----HHHHHHHHTT-
T ss_pred HHHHCCceeeccCCCCCcC--chhHHHHHhccCc
Confidence 999999999987643 443 3467788888764
|
In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E .... |
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.1e-08 Score=95.64 Aligned_cols=121 Identities=22% Similarity=0.306 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHcCCCeEEEecCC-------------------------ChhHHHHHHHHHHhh-CCCcEEEEeCC-----
Q 015289 189 EAAELASKYRKQGFTTLKLKVGK-------------------------NLKEDIEVLRAIRAV-HPDSSFILDAN----- 237 (409)
Q Consensus 189 ~~~~~~~~~~~~Gf~~~KiKvG~-------------------------~~~~d~~~l~avr~~-~~~~~l~vDaN----- 237 (409)
+.++.++++++.||..|.|..+. .++-.++.|++||++ ++++.|.+|.|
T Consensus 150 ~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~ 229 (338)
T cd04733 150 RFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQ 229 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcC
Confidence 34566677788999999998761 133457889999997 78999999998
Q ss_pred -CCCCHHHHHHHHHHHHhCCCCCceee-------cCCCC---C---------CHHHHHHhHHHhhccCCCeEEeCCCCCC
Q 015289 238 -EGYKPQEAVEVLEKLYEMGVTPVLFE-------QPVHR---D---------DWEGLGHVSHIAKDKFGVSVAADESCRS 297 (409)
Q Consensus 238 -~~w~~~~A~~~~~~L~~~~l~~~~iE-------eP~~~---~---------d~~~~~~l~~~~~~~~~ipIa~dEs~~~ 297 (409)
++|+.++++++++.|++.++. ||| +|... + .++..++++ +.+++||++++.+.+
T Consensus 230 ~~g~~~eea~~ia~~Le~~Gvd--~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik----~~v~iPVi~~G~i~t 303 (338)
T cd04733 230 RGGFTEEDALEVVEALEEAGVD--LVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIR----KVTKTPLMVTGGFRT 303 (338)
T ss_pred CCCCCHHHHHHHHHHHHHcCCC--EEEecCCCCCCccccccccCCccccchhhHHHHHHHH----HHcCCCEEEeCCCCC
Confidence 579999999999999999874 998 66532 1 123334444 468999999999999
Q ss_pred HHHHHHHHHcCCCCEEEe
Q 015289 298 LDDVKKIVKGNLADVINI 315 (409)
Q Consensus 298 ~~~~~~~i~~~a~div~~ 315 (409)
++++.++++.+.+|+|.+
T Consensus 304 ~~~a~~~l~~g~aD~V~l 321 (338)
T cd04733 304 RAAMEQALASGAVDGIGL 321 (338)
T ss_pred HHHHHHHHHcCCCCeeee
Confidence 999999999999999865
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.6e-07 Score=90.14 Aligned_cols=120 Identities=22% Similarity=0.292 Sum_probs=94.4
Q ss_pred HHHHHHHHHHcCCCeEEEecCC------------C-------------hhHHHHHHHHHHhh-CCCcEEEEeCC------
Q 015289 190 AAELASKYRKQGFTTLKLKVGK------------N-------------LKEDIEVLRAIRAV-HPDSSFILDAN------ 237 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~------------~-------------~~~d~~~l~avr~~-~~~~~l~vDaN------ 237 (409)
+.+.++.+.+.||..|+|+.+. + .+...+.+++||+. ++++.|.++.|
T Consensus 143 ~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~ 222 (327)
T cd02803 143 FAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVP 222 (327)
T ss_pred HHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCC
Confidence 4556677788999999999862 1 12237889999997 78889988877
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCceee-------cCCC---------CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHH
Q 015289 238 EGYKPQEAVEVLEKLYEMGVTPVLFE-------QPVH---------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDV 301 (409)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iE-------eP~~---------~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~ 301 (409)
++|+.++++++++.|+++++. ||+ +|.. ..+++..++++ +.+++||++.+.+.+..++
T Consensus 223 ~g~~~~e~~~la~~l~~~G~d--~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir----~~~~iPVi~~Ggi~t~~~a 296 (327)
T cd02803 223 GGLTLEEAIEIAKALEEAGVD--ALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIK----KAVKIPVIAVGGIRDPEVA 296 (327)
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEeCCCCCcccccccCCCCCCcchhHHHHHHHH----HHCCCCEEEeCCCCCHHHH
Confidence 457899999999999999975 884 6554 23445555554 3578999999999999999
Q ss_pred HHHHHcCCCCEEEe
Q 015289 302 KKIVKGNLADVINI 315 (409)
Q Consensus 302 ~~~i~~~a~div~~ 315 (409)
.++++.+.+|+|.+
T Consensus 297 ~~~l~~g~aD~V~i 310 (327)
T cd02803 297 EEILAEGKADLVAL 310 (327)
T ss_pred HHHHHCCCCCeeee
Confidence 99999988999865
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.5e-07 Score=89.80 Aligned_cols=122 Identities=20% Similarity=0.237 Sum_probs=92.9
Q ss_pred HHHHHHHHHHcCCCeEEEecC----------C---------------ChhHHHHHHHHHHhh-CCCcEEE-----EeCC-
Q 015289 190 AAELASKYRKQGFTTLKLKVG----------K---------------NLKEDIEVLRAIRAV-HPDSSFI-----LDAN- 237 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG----------~---------------~~~~d~~~l~avr~~-~~~~~l~-----vDaN- 237 (409)
+.+.++.+++.||..|+|+.+ + .++...+.+++||++ ++++.+. .|.+
T Consensus 139 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~ 218 (353)
T cd02930 139 FARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVE 218 (353)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCC
Confidence 455667778899999999863 1 145667899999997 7786664 5654
Q ss_pred CCCCHHHHHHHHHHHHhCCCC-----CceeecCCCCCC--------HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHH
Q 015289 238 EGYKPQEAVEVLEKLYEMGVT-----PVLFEQPVHRDD--------WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 304 (409)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~-----~~~iEeP~~~~d--------~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~ 304 (409)
++|+.++++++++.|+++++. ..|.|+|++..+ .+..++++ +.+++||+.++.+.+++++.++
T Consensus 219 ~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik----~~v~iPVi~~G~i~~~~~a~~~ 294 (353)
T cd02930 219 GGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLK----RAVDIPVIASNRINTPEVAERL 294 (353)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHH----HhCCCCEEEcCCCCCHHHHHHH
Confidence 668999999999999998842 125688876431 22334444 4789999999999999999999
Q ss_pred HHcCCCCEEEe
Q 015289 305 VKGNLADVINI 315 (409)
Q Consensus 305 i~~~a~div~~ 315 (409)
++.+.+|+|++
T Consensus 295 i~~g~~D~V~~ 305 (353)
T cd02930 295 LADGDADMVSM 305 (353)
T ss_pred HHCCCCChhHh
Confidence 99999999854
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >PF03952 Enolase_N: Enolase, N-terminal domain; InterPro: IPR020811 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.5e-05 Score=67.87 Aligned_cols=111 Identities=20% Similarity=0.242 Sum_probs=78.9
Q ss_pred eEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccC----------------CccCcccHHHHHHH
Q 015289 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL----------------PHVTAEDQQTAMVK 110 (409)
Q Consensus 47 kI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~----------------~~~~~e~~~~~~~~ 110 (409)
+|++|..+.+ -.|.| .+++-|+|.+++|..|.+-++.. ..|.+..+..++..
T Consensus 1 ~I~~v~~r~I--------lDsrG----~PTVEveV~~~~g~~~ra~~PsGaStG~~Ea~elrD~~~~~~~gkgV~~Av~~ 68 (132)
T PF03952_consen 1 TITKVKAREI--------LDSRG----NPTVEVEVFTSNGNVGRASVPSGASTGSHEAVELRDGDPERYGGKGVSKAVEN 68 (132)
T ss_dssp BEEEEEEEEE--------E-TTS-----EEEEEEEEETTEEEEEEE--B-SSSSSSS-B---B-STTSGGGTBHHHHHHH
T ss_pred CeEEEEEEEE--------EcCCC----CceEEEEEEECCcccceeccccccCCCccccccccCCCcceecCcccchhhhh
Confidence 5777877775 23444 47899999999998888877542 12334456777777
Q ss_pred HHH-HHHHHcCCCCCCHHHHHHHHHhhc--C--CChhhHHHHHHHHHHHHHHHhhcCCchHHHh
Q 015289 111 ASE-ACEVLKESPAMALGSVFGVVAGLL--P--GHQFASVRAAVEMALIDAVAKSVSMPLWRLF 169 (409)
Q Consensus 111 ~~~-~~~~l~g~~~~~~~~~~~~~~~~~--~--g~~~~~a~said~AlwDl~gk~~g~Pl~~LL 169 (409)
+++ +.|.|+|.++.+...+.+.|.+.- + .+..+.+.-|+.+|++-+.|+..++|||++|
T Consensus 69 vn~~i~~~L~g~~~~dQ~~iD~~L~~lDgT~nk~~lGaNa~lavS~A~a~AaA~~~~~pL~~~l 132 (132)
T PF03952_consen 69 VNEIIAPALIGLDPTDQEEIDQILIELDGTPNKSRLGANAILAVSLAVAKAAAAAKGIPLYRYL 132 (132)
T ss_dssp HHHTHHHHHTTSBTT-HHHHHHHHHHHHTSTTSTTT-HHHHHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred HHHHHHHHHHhcchhhHHHhCccceeccCChhhhcccchHHHHHHHHHHHHHHHHcCCChhhcC
Confidence 765 789999999999998887775532 1 1122568899999999999999999999986
|
In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3OTR_F 3QTP_A 1PDY_A 1PDZ_A 3TQP_B 2PTZ_A 2PTW_A .... |
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0013 Score=64.45 Aligned_cols=143 Identities=15% Similarity=0.202 Sum_probs=105.1
Q ss_pred eeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCC----------------ChhHHHHHHHHHHhhC-CCcEEEEeCC
Q 015289 175 TITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVH-PDSSFILDAN 237 (409)
Q Consensus 175 ~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~d~~~l~avr~~~-~~~~l~vDaN 237 (409)
..|+...+...+|+++++.++.+.+.||..+-|.+|. +++.-.+.++++|+.. +++.+.+=..
T Consensus 62 e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR 141 (312)
T PRK10550 62 GTLVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVR 141 (312)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEE
Confidence 3466677778899999998888888999999999872 3445556778888874 4677776666
Q ss_pred CCCC-HHHHHHHHHHHHhCCCCCce-----eecCCCC--CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCC
Q 015289 238 EGYK-PQEAVEVLEKLYEMGVTPVL-----FEQPVHR--DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 309 (409)
Q Consensus 238 ~~w~-~~~A~~~~~~L~~~~l~~~~-----iEeP~~~--~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a 309 (409)
-+|+ .+++.++++.+++.|+...- -+|-... -||+..+++.+ ..++||.+.=.+.+.+++.++++...
T Consensus 142 ~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~----~~~iPVi~nGdI~t~~da~~~l~~~g 217 (312)
T PRK10550 142 LGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQ----RLTIPVIANGEIWDWQSAQQCMAITG 217 (312)
T ss_pred CCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHh----hcCCcEEEeCCcCCHHHHHHHHhccC
Confidence 6775 35678999999998764111 1343322 26766777654 57899999999999999999999888
Q ss_pred CCEEEeCCCCCc
Q 015289 310 ADVINIKLAKVG 321 (409)
Q Consensus 310 ~div~~k~~~~G 321 (409)
+|.|++=-+-+|
T Consensus 218 ~DgVmiGRg~l~ 229 (312)
T PRK10550 218 CDAVMIGRGALN 229 (312)
T ss_pred CCEEEEcHHhHh
Confidence 999987443333
|
|
| >PF05034 MAAL_N: Methylaspartate ammonia-lyase N-terminus; InterPro: IPR022665 Methylaspartate ammonia-lyase 4 | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00078 Score=57.85 Aligned_cols=97 Identities=18% Similarity=0.254 Sum_probs=63.2
Q ss_pred eeeEEEEEEEECCCceEEEEeccCC--ccCcc-cH---HHHHHHHH-HHHHHHcCCCCCCHHHHHHHHHhhcCCCh-hhH
Q 015289 73 QVENVAIRIELSNGCVGWGEAPVLP--HVTAE-DQ---QTAMVKAS-EACEVLKESPAMALGSVFGVVAGLLPGHQ-FAS 144 (409)
Q Consensus 73 ~~~~~iVrl~td~G~~G~GE~~~~~--~~~~e-~~---~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~g~~-~~~ 144 (409)
..+.+.|-+..+||.+.||.|...- +..+. .+ +..+..++ .+.|+|+|++......+.+.+.+...|.. ..+
T Consensus 49 ~gesisV~l~L~dG~va~GDCaaVQYSGagGRDPLF~a~~~ip~ie~~v~p~L~g~d~~~Fr~~a~~~d~~~~g~rlhtA 128 (159)
T PF05034_consen 49 AGESISVMLVLEDGQVAYGDCAAVQYSGAGGRDPLFLAEDFIPVIEKEVAPRLVGRDLSSFRENAEKFDELVDGKRLHTA 128 (159)
T ss_dssp EEEEEEEEEEETTS-EEEEEE---TTTTSTTS-S---HHHHHHHHHHHTHHHHTT-B-S-CHHHHHHHHH-ETTEE--HH
T ss_pred cCcEEEEEEEeCCCCEEEeeehheeecccCCCCCcccHHHHHHHHHhhccHHHcCCcHHHHHHHHHHHHhcccCCcchhH
Confidence 3578999999999999999998632 11111 11 12222333 47899999999999888888876644432 246
Q ss_pred HHHHHHHHHHHHHHhhcCCchHHHh
Q 015289 145 VRAAVEMALIDAVAKSVSMPLWRLF 169 (409)
Q Consensus 145 a~said~AlwDl~gk~~g~Pl~~LL 169 (409)
.+.+|..||+|+.|+..+.-..+.+
T Consensus 129 iRYGvsQALL~A~A~a~~~tmaeVi 153 (159)
T PF05034_consen 129 IRYGVSQALLDAAAKAQRTTMAEVI 153 (159)
T ss_dssp HHHHHHHHHHHHHHHHCTS-HHHHH
T ss_pred HHHhHHHHHHHHHHHHcCCcHHHHH
Confidence 8999999999999999988766654
|
3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the N-terminal region of methylaspartate ammonia-lyase. This domain is structurally related to PF03952 from PFAM []. This domain is associated with the catalytic domain PF07476 from PFAM. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A. |
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0058 Score=60.21 Aligned_cols=138 Identities=17% Similarity=0.256 Sum_probs=99.2
Q ss_pred eeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCC----------------ChhHHHHHHHHHHhhCCCcEEEEeCCCCC
Q 015289 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVHPDSSFILDANEGY 240 (409)
Q Consensus 177 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~d~~~l~avr~~~~~~~l~vDaN~~w 240 (409)
++...+...+|+++++.++...+.||..+-+.+|- +++.-.+.++++|+.. ++.+.+=.+.+|
T Consensus 66 ~~~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~-d~pv~vKiR~G~ 144 (321)
T PRK10415 66 IRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV-DVPVTLKIRTGW 144 (321)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc-CCceEEEEEccc
Confidence 44466677799999888877777899999999882 2445556677887753 344544444667
Q ss_pred CH--HHHHHHHHHHHhCCCCCcee-------ecCCC-CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCC
Q 015289 241 KP--QEAVEVLEKLYEMGVTPVLF-------EQPVH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA 310 (409)
Q Consensus 241 ~~--~~A~~~~~~L~~~~l~~~~i-------EeP~~-~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~ 310 (409)
+. .++.++++.+++.|+. +| ++-.. ..+++..+++++ .+++||.+.=.+.+.+++.++++...+
T Consensus 145 ~~~~~~~~~~a~~le~~G~d--~i~vh~rt~~~~~~G~a~~~~i~~ik~----~~~iPVI~nGgI~s~~da~~~l~~~ga 218 (321)
T PRK10415 145 APEHRNCVEIAQLAEDCGIQ--ALTIHGRTRACLFNGEAEYDSIRAVKQ----KVSIPVIANGDITDPLKARAVLDYTGA 218 (321)
T ss_pred cCCcchHHHHHHHHHHhCCC--EEEEecCccccccCCCcChHHHHHHHH----hcCCcEEEeCCCCCHHHHHHHHhccCC
Confidence 64 3578899999998874 55 33322 246766676654 678999999999999999999987779
Q ss_pred CEEEeCCCCCc
Q 015289 311 DVINIKLAKVG 321 (409)
Q Consensus 311 div~~k~~~~G 321 (409)
|.|++=-+-++
T Consensus 219 dgVmiGR~~l~ 229 (321)
T PRK10415 219 DALMIGRAAQG 229 (321)
T ss_pred CEEEEChHhhc
Confidence 99987544333
|
|
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.009 Score=58.86 Aligned_cols=140 Identities=21% Similarity=0.312 Sum_probs=110.3
Q ss_pred eeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecC----------------CChhHHHHHHHHHHhhCCCcEEEEeCCC
Q 015289 175 TITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG----------------KNLKEDIEVLRAIRAVHPDSSFILDANE 238 (409)
Q Consensus 175 ~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG----------------~~~~~d~~~l~avr~~~~~~~l~vDaN~ 238 (409)
..|+...+...+|+.+++.++...+.||..|-|.+| .+++.-.+.|++++++.+++.+.|=..-
T Consensus 66 e~p~~vQl~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRl 145 (323)
T COG0042 66 ERPVAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRL 145 (323)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 445566777789988888888888899999999988 2456667788999998558889998889
Q ss_pred CCCHHH--HHHHHHHHHhCCCCCcee---------ecCCCCCCHHHHHHhHHHhhccCC-CeEEeCCCCCCHHHHHHHHH
Q 015289 239 GYKPQE--AVEVLEKLYEMGVTPVLF---------EQPVHRDDWEGLGHVSHIAKDKFG-VSVAADESCRSLDDVKKIVK 306 (409)
Q Consensus 239 ~w~~~~--A~~~~~~L~~~~l~~~~i---------EeP~~~~d~~~~~~l~~~~~~~~~-ipIa~dEs~~~~~~~~~~i~ 306 (409)
+|+.++ +.++++.+++.|....++ ..| -||+..+++++ ... +||.+.-.+.+.++.++.++
T Consensus 146 G~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~---ad~~~I~~vk~----~~~~ipvi~NGdI~s~~~a~~~l~ 218 (323)
T COG0042 146 GWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGP---ADWDYIKELKE----AVPSIPVIANGDIKSLEDAKEMLE 218 (323)
T ss_pred ccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCc---cCHHHHHHHHH----hCCCCeEEeCCCcCCHHHHHHHHH
Confidence 998665 778899999987653232 233 47888888875 445 99999999999999999999
Q ss_pred cCCCCEEEeCCCCCc
Q 015289 307 GNLADVINIKLAKVG 321 (409)
Q Consensus 307 ~~a~div~~k~~~~G 321 (409)
...+|.|.+--...|
T Consensus 219 ~tg~DgVMigRga~~ 233 (323)
T COG0042 219 YTGADGVMIGRGALG 233 (323)
T ss_pred hhCCCEEEEcHHHcc
Confidence 888999987544444
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.011 Score=57.28 Aligned_cols=132 Identities=14% Similarity=0.199 Sum_probs=95.8
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCC-----------ChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHH
Q 015289 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-----------NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQE 244 (409)
Q Consensus 176 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~-----------~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~ 244 (409)
.|+..++...+++++.+.++.+.+.|+..+-+.++. +++.-.+.++++|+.. ++.+.+..+..++.++
T Consensus 99 ~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~ 177 (289)
T cd02810 99 QPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPYFDLED 177 (289)
T ss_pred CeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHHH
Confidence 455666666688888888888888899999998871 2233345678888765 6778999888899989
Q ss_pred HHHHHHHHHhCCCCCceeecC---------------CCC-------------CCHHHHHHhHHHhhccC--CCeEEeCCC
Q 015289 245 AVEVLEKLYEMGVTPVLFEQP---------------VHR-------------DDWEGLGHVSHIAKDKF--GVSVAADES 294 (409)
Q Consensus 245 A~~~~~~L~~~~l~~~~iEeP---------------~~~-------------~d~~~~~~l~~~~~~~~--~ipIa~dEs 294 (409)
..++++.+++.++. +|.=+ ... ..++..++++ +.. ++||.+.=.
T Consensus 178 ~~~~a~~l~~~Gad--~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~----~~~~~~ipiia~GG 251 (289)
T cd02810 178 IVELAKAAERAGAD--GLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLA----ARLQLDIPIIGVGG 251 (289)
T ss_pred HHHHHHHHHHcCCC--EEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHH----HhcCCCCCEEEECC
Confidence 99999999998864 55421 000 0122233333 345 799999889
Q ss_pred CCCHHHHHHHHHcCCCCEEEe
Q 015289 295 CRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 295 ~~~~~~~~~~i~~~a~div~~ 315 (409)
+.+.+++.++++.| +|.+++
T Consensus 252 I~~~~da~~~l~~G-Ad~V~v 271 (289)
T cd02810 252 IDSGEDVLEMLMAG-ASAVQV 271 (289)
T ss_pred CCCHHHHHHHHHcC-ccHheE
Confidence 99999999999988 788765
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.037 Score=51.80 Aligned_cols=131 Identities=15% Similarity=0.232 Sum_probs=94.1
Q ss_pred eeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecC----------------CChhHHHHHHHHHHhhCCCcEEEEeCCCCC
Q 015289 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG----------------KNLKEDIEVLRAIRAVHPDSSFILDANEGY 240 (409)
Q Consensus 177 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG----------------~~~~~d~~~l~avr~~~~~~~l~vDaN~~w 240 (409)
|+..++...+++++.+.++.. +.++..+-+.+| .+++.-.+.++++++. ++.+.+=-.-.|
T Consensus 69 ~vivnv~~~~~ee~~~~a~~v-~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~--~~PVsvKiR~~~ 145 (231)
T TIGR00736 69 LVSVNVRFVDLEEAYDVLLTI-AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKEL--NKPIFVKIRGNC 145 (231)
T ss_pred CEEEEEecCCHHHHHHHHHHH-hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcC--CCcEEEEeCCCC
Confidence 556677778999988776654 568999998876 2455556667777754 344555554446
Q ss_pred CHHHHHHHHHHHHhCCCCCceeecCCCCC---CHHHHHHhHHHhhccC-CCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRD---DWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~---d~~~~~~l~~~~~~~~-~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
+..+..++++.+++.|....-+.+=.+.. +|+.++++++ .. .+||.+.=.+.+.+|+.++++.| +|.|++
T Consensus 146 ~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~----~~~~ipIIgNGgI~s~eda~e~l~~G-Ad~Vmv 219 (231)
T TIGR00736 146 IPLDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSE----EFNDKIIIGNNSIDDIESAKEMLKAG-ADFVSV 219 (231)
T ss_pred CcchHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHH----hcCCCcEEEECCcCCHHHHHHHHHhC-CCeEEE
Confidence 65667889999999987645566544432 5666666654 55 49999999999999999999975 798876
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0096 Score=58.33 Aligned_cols=143 Identities=24% Similarity=0.371 Sum_probs=96.3
Q ss_pred HHhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecC----------------CChhHHHHHHHHHHhhCCCc
Q 015289 167 RLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG----------------KNLKEDIEVLRAIRAVHPDS 230 (409)
Q Consensus 167 ~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG----------------~~~~~d~~~l~avr~~~~~~ 230 (409)
+++......-|+...+...+|+.+.+.++...+.||..|-|.+| .+++.-.+.|+++++..+ .
T Consensus 45 ~~~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~-~ 123 (309)
T PF01207_consen 45 RLLPFLPNERPLIVQLFGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVP-I 123 (309)
T ss_dssp HHS-GCC-T-TEEEEEE-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-S-S
T ss_pred ecccccccccceeEEEeeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccc-c
Confidence 33333333345666777789999888777666669999999988 245666677888888654 6
Q ss_pred EEEEeCCCCCC--HHHHHHHHHHHHhCCCCCcee-------ecCCC-CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHH
Q 015289 231 SFILDANEGYK--PQEAVEVLEKLYEMGVTPVLF-------EQPVH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD 300 (409)
Q Consensus 231 ~l~vDaN~~w~--~~~A~~~~~~L~~~~l~~~~i-------EeP~~-~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~ 300 (409)
.+.+-..-+|+ .++.+++++.+++.|+. +| +|-.. +-||+.++++.+ ...+||.+.=.+.+++|
T Consensus 124 pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~--~i~vH~Rt~~q~~~~~a~w~~i~~i~~----~~~ipvi~NGdI~s~~d 197 (309)
T PF01207_consen 124 PVSVKIRLGWDDSPEETIEFARILEDAGVS--AITVHGRTRKQRYKGPADWEAIAEIKE----ALPIPVIANGDIFSPED 197 (309)
T ss_dssp EEEEEEESECT--CHHHHHHHHHHHHTT----EEEEECS-TTCCCTS---HHHHHHCHH----C-TSEEEEESS--SHHH
T ss_pred ceEEecccccccchhHHHHHHHHhhhcccc--eEEEecCchhhcCCcccchHHHHHHhh----cccceeEEcCccCCHHH
Confidence 77777777887 67789999999999875 54 34433 457888888764 67799999999999999
Q ss_pred HHHHHHcCCCCEEEeC
Q 015289 301 VKKIVKGNLADVINIK 316 (409)
Q Consensus 301 ~~~~i~~~a~div~~k 316 (409)
+.++++.-.+|.|.+=
T Consensus 198 ~~~~~~~tg~dgvMig 213 (309)
T PF01207_consen 198 AERMLEQTGADGVMIG 213 (309)
T ss_dssp HHHHCCCH-SSEEEES
T ss_pred HHHHHHhcCCcEEEEc
Confidence 9999987568998763
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.026 Score=57.00 Aligned_cols=124 Identities=19% Similarity=0.219 Sum_probs=83.0
Q ss_pred HHHHHHHHHHcCCCeEEEec---CC-------------------C----hhHHHHHHHHHHhh-CCCcEE--EEeC----
Q 015289 190 AAELASKYRKQGFTTLKLKV---GK-------------------N----LKEDIEVLRAIRAV-HPDSSF--ILDA---- 236 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKv---G~-------------------~----~~~d~~~l~avr~~-~~~~~l--~vDa---- 236 (409)
..+.++.+++.||..|.|.. |- . ++--++.+++||+. ++++.+ ++.+
T Consensus 152 f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~ 231 (382)
T cd02931 152 FGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYI 231 (382)
T ss_pred HHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhc
Confidence 35556677788999999997 40 1 12335788999997 677543 3332
Q ss_pred --------------CCCCCHHHHHHHHHHHHhCCCCCceeec-------CC---CCCC-HHH-HHHhHHHhhccCCCeEE
Q 015289 237 --------------NEGYKPQEAVEVLEKLYEMGVTPVLFEQ-------PV---HRDD-WEG-LGHVSHIAKDKFGVSVA 290 (409)
Q Consensus 237 --------------N~~w~~~~A~~~~~~L~~~~l~~~~iEe-------P~---~~~d-~~~-~~~l~~~~~~~~~ipIa 290 (409)
+++++.++++++++.|++.++. |++= +. ++.. ..+ +..+.+..++..++||.
T Consensus 232 ~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD--~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi 309 (382)
T cd02931 232 KDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYD--ALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVI 309 (382)
T ss_pred cccccccccccccccCCCCHHHHHHHHHHHHHhCCC--EEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEE
Confidence 3478999999999999998764 5531 11 0000 000 11122223346789999
Q ss_pred eCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 291 ADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 291 ~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
+-=.+.++++..++++.+.+|.|.+
T Consensus 310 ~~G~i~~~~~~~~~l~~g~~D~V~~ 334 (382)
T cd02931 310 MAGRMEDPELASEAINEGIADMISL 334 (382)
T ss_pred EeCCCCCHHHHHHHHHcCCCCeeee
Confidence 9889999999999999999999854
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.042 Score=54.02 Aligned_cols=135 Identities=16% Similarity=0.209 Sum_probs=94.8
Q ss_pred CeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCC----------------ChhHHHHHHHHHHhhCCCcEEEEeCC
Q 015289 174 NTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVHPDSSFILDAN 237 (409)
Q Consensus 174 ~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~d~~~l~avr~~~~~~~l~vDaN 237 (409)
...|+...+...+++++.+.++.+.+.||..+-+..|. +++.-.+.++++|+..+ +.+.+-..
T Consensus 61 ~~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~-~pv~vKir 139 (319)
T TIGR00737 61 DETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVD-IPVTVKIR 139 (319)
T ss_pred ccceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcC-CCEEEEEE
Confidence 34566677788899999998888888899999998872 22334466777877532 44555444
Q ss_pred CCCCH--HHHHHHHHHHHhCCCCCceee-------cCCC-CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHc
Q 015289 238 EGYKP--QEAVEVLEKLYEMGVTPVLFE-------QPVH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 307 (409)
Q Consensus 238 ~~w~~--~~A~~~~~~L~~~~l~~~~iE-------eP~~-~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~ 307 (409)
.+|+. .+..++++.+++.|+. +|- +-.+ +-+++..++++ +..++||.+.=.+.+.+++.++++.
T Consensus 140 ~g~~~~~~~~~~~a~~l~~~G~d--~i~vh~r~~~~~~~~~~~~~~i~~i~----~~~~ipvi~nGgI~~~~da~~~l~~ 213 (319)
T TIGR00737 140 IGWDDAHINAVEAARIAEDAGAQ--AVTLHGRTRAQGYSGEANWDIIARVK----QAVRIPVIGNGDIFSPEDAKAMLET 213 (319)
T ss_pred cccCCCcchHHHHHHHHHHhCCC--EEEEEcccccccCCCchhHHHHHHHH----HcCCCcEEEeCCCCCHHHHHHHHHh
Confidence 45542 3467888999988864 432 1111 22455556554 3678999999999999999999977
Q ss_pred CCCCEEEe
Q 015289 308 NLADVINI 315 (409)
Q Consensus 308 ~a~div~~ 315 (409)
+.+|.|++
T Consensus 214 ~gad~Vmi 221 (319)
T TIGR00737 214 TGCDGVMI 221 (319)
T ss_pred hCCCEEEE
Confidence 77899987
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.04 Score=53.66 Aligned_cols=131 Identities=16% Similarity=0.224 Sum_probs=93.1
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHcC-CCeEEEecC------------CChhHHHHHHHHHHhhCCCcEEEEeCCCCCCH
Q 015289 176 ITTDITIPIVSPAEAAELASKYRKQG-FTTLKLKVG------------KNLKEDIEVLRAIRAVHPDSSFILDANEGYKP 242 (409)
Q Consensus 176 i~~~~~i~~~~~~~~~~~~~~~~~~G-f~~~KiKvG------------~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~ 242 (409)
+|+..++...++++..+.++++.+.| |..+-+.++ .+++.-.+.+++||+.. ++.+.+.-+. +.
T Consensus 92 ~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~--~~ 168 (301)
T PRK07259 92 TPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTP--NV 168 (301)
T ss_pred CcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCC--Cc
Confidence 45566776778999999888888888 999998653 23455567788888865 5677777664 44
Q ss_pred HHHHHHHHHHHhCCCCCceee---------------cCC-------------CCCCHHHHHHhHHHhhccCCCeEEeCCC
Q 015289 243 QEAVEVLEKLYEMGVTPVLFE---------------QPV-------------HRDDWEGLGHVSHIAKDKFGVSVAADES 294 (409)
Q Consensus 243 ~~A~~~~~~L~~~~l~~~~iE---------------eP~-------------~~~d~~~~~~l~~~~~~~~~ipIa~dEs 294 (409)
++..++++.+++.++. .|. +|. .+..++..++++ +.+++||...=.
T Consensus 169 ~~~~~~a~~l~~~G~d--~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~----~~~~ipvi~~GG 242 (301)
T PRK07259 169 TDIVEIAKAAEEAGAD--GLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVY----QAVDIPIIGMGG 242 (301)
T ss_pred hhHHHHHHHHHHcCCC--EEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHH----HhCCCCEEEECC
Confidence 5777888999887753 221 111 111233344443 356899999999
Q ss_pred CCCHHHHHHHHHcCCCCEEEeC
Q 015289 295 CRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 295 ~~~~~~~~~~i~~~a~div~~k 316 (409)
+.+.+++.++++.| +|.|++=
T Consensus 243 I~~~~da~~~l~aG-Ad~V~ig 263 (301)
T PRK07259 243 ISSAEDAIEFIMAG-ASAVQVG 263 (301)
T ss_pred CCCHHHHHHHHHcC-CCceeEc
Confidence 99999999999988 6998864
|
|
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.035 Score=55.25 Aligned_cols=120 Identities=21% Similarity=0.326 Sum_probs=84.5
Q ss_pred HHHHHHHHHHcCCCeEEEecCC---------------------Ch----hHHHHHHHHHHhh-CCCc--EEEEeC----C
Q 015289 190 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDS--SFILDA----N 237 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~d~~~l~avr~~-~~~~--~l~vDa----N 237 (409)
+++.++++.+.||..+-|..+. ++ +--++.+++||+. ++++ .+++-+ .
T Consensus 143 f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~ 222 (343)
T cd04734 143 FADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTE 222 (343)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccC
Confidence 4555667778899999999831 12 2335778999997 6664 455554 3
Q ss_pred CCCCHHHHHHHHHHHHhCC-CCCceee-------cC------CCC------CCHHHHHHhHHHhhccCCCeEEeCCCCCC
Q 015289 238 EGYKPQEAVEVLEKLYEMG-VTPVLFE-------QP------VHR------DDWEGLGHVSHIAKDKFGVSVAADESCRS 297 (409)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~-l~~~~iE-------eP------~~~------~d~~~~~~l~~~~~~~~~ipIa~dEs~~~ 297 (409)
++++.++++++++.|++.+ +. |++ ++ .++ .+++..++++ +..++||...=.+.+
T Consensus 223 ~G~~~~e~~~~~~~l~~~G~vd--~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik----~~~~ipvi~~G~i~~ 296 (343)
T cd04734 223 GGLSPDEALEIAARLAAEGLID--YVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIK----QAVDLPVFHAGRIRD 296 (343)
T ss_pred CCCCHHHHHHHHHHHHhcCCCC--EEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHH----HHcCCCEEeeCCCCC
Confidence 4588999999999999987 54 554 21 111 1233333343 467899999888999
Q ss_pred HHHHHHHHHcCCCCEEEe
Q 015289 298 LDDVKKIVKGNLADVINI 315 (409)
Q Consensus 298 ~~~~~~~i~~~a~div~~ 315 (409)
++++.++++.+.+|.|.+
T Consensus 297 ~~~~~~~l~~~~~D~V~~ 314 (343)
T cd04734 297 PAEAEQALAAGHADMVGM 314 (343)
T ss_pred HHHHHHHHHcCCCCeeee
Confidence 999999999998999855
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.071 Score=52.81 Aligned_cols=142 Identities=15% Similarity=0.243 Sum_probs=97.9
Q ss_pred HHhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCC----------------ChhHHHHHHHHHHhhC--C
Q 015289 167 RLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVH--P 228 (409)
Q Consensus 167 ~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~d~~~l~avr~~~--~ 228 (409)
+++.-....-|+...+...+|+++++.++.+.+.||..|-+..|- +++.-.+.++++|+.. |
T Consensus 56 ~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~p 135 (333)
T PRK11815 56 RLLAFDPEEHPVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIP 135 (333)
T ss_pred HHhccCCCCCcEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCc
Confidence 344333334566778888899999888888888899999998771 3445567788888852 3
Q ss_pred -CcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceee--------cC--------CCCCCHHHHHHhHHHhhcc-CCCeEE
Q 015289 229 -DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE--------QP--------VHRDDWEGLGHVSHIAKDK-FGVSVA 290 (409)
Q Consensus 229 -~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE--------eP--------~~~~d~~~~~~l~~~~~~~-~~ipIa 290 (409)
.+++++-....-+.+++.++++.+++.|+. +|. |- +++-+++..+++++ . .++||.
T Consensus 136 VsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d--~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~----~~~~iPVI 209 (333)
T PRK11815 136 VTVKHRIGIDDQDSYEFLCDFVDTVAEAGCD--TFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKR----DFPHLTIE 209 (333)
T ss_pred eEEEEEeeeCCCcCHHHHHHHHHHHHHhCCC--EEEEcCCchhhcCCCccccccCCCcCHHHHHHHHH----hCCCCeEE
Confidence 344444322223456788999999998865 442 11 12345766776653 4 379999
Q ss_pred eCCCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 291 ADESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 291 ~dEs~~~~~~~~~~i~~~a~div~~k 316 (409)
+.=.+.+++++.++++ + +|.|++=
T Consensus 210 ~nGgI~s~eda~~~l~-~-aDgVmIG 233 (333)
T PRK11815 210 INGGIKTLEEAKEHLQ-H-VDGVMIG 233 (333)
T ss_pred EECCcCCHHHHHHHHh-c-CCEEEEc
Confidence 9889999999999997 3 8988763
|
|
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.089 Score=49.41 Aligned_cols=131 Identities=11% Similarity=0.191 Sum_probs=90.0
Q ss_pred eeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecC-C---------------ChhHHHHHHHHHHhhCCCcEEEEeCCCCC
Q 015289 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-K---------------NLKEDIEVLRAIRAVHPDSSFILDANEGY 240 (409)
Q Consensus 177 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG-~---------------~~~~d~~~l~avr~~~~~~~l~vDaN~~w 240 (409)
|+..++...+++++.+.++...+ +...+-+.+| + +++.-.+.++++|+. ++.+.+=....|
T Consensus 74 p~~vqi~g~~~~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~--~~pVsvKir~g~ 150 (233)
T cd02911 74 LVGVNVRSSSLEPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKET--GVPVSVKIRAGV 150 (233)
T ss_pred eEEEEecCCCHHHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhc--CCCEEEEEcCCc
Confidence 44556666788888877776644 4588888877 1 344556678888875 566666666678
Q ss_pred CHHHHHHHHHHHHhCCCCCceeecCC--CCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 015289 241 KPQEAVEVLEKLYEMGVTPVLFEQPV--HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~--~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~ 318 (409)
+ ++..++++.+++.|+...-+..=. ..-|++..+++ +.++||.+.=.+.+.+++.++++.| +|.|++--.
T Consensus 151 ~-~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i------~~~ipVIgnGgI~s~eda~~~l~~G-aD~VmiGR~ 222 (233)
T cd02911 151 D-VDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDI------STELFIIGNNSVTTIESAKEMFSYG-ADMVSVARA 222 (233)
T ss_pred C-cCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHh------cCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEcCC
Confidence 7 777889999999886521121111 12245444443 1579999999999999999999977 899987533
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.051 Score=54.35 Aligned_cols=119 Identities=28% Similarity=0.387 Sum_probs=80.2
Q ss_pred HHHHHHHHHHcCCCeEEEecCC---------------------Ch----hHHHHHHHHHHhh-CCCcEEEEeCC------
Q 015289 190 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDSSFILDAN------ 237 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~d~~~l~avr~~-~~~~~l~vDaN------ 237 (409)
..+.++.+++.||..|-|+.+. ++ +--.+.+++||++ ++|+.+.+=.|
T Consensus 146 f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~ 225 (361)
T cd04747 146 FARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQD 225 (361)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccc
Confidence 3555677778899999999652 11 2345788999997 78865444222
Q ss_pred ----CCCCHHHHHHHHHHHHhCCCCCceee-------cC-CCCCCHHHHHHhHHHhhccCCCeEEeCCCC----------
Q 015289 238 ----EGYKPQEAVEVLEKLYEMGVTPVLFE-------QP-VHRDDWEGLGHVSHIAKDKFGVSVAADESC---------- 295 (409)
Q Consensus 238 ----~~w~~~~A~~~~~~L~~~~l~~~~iE-------eP-~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~---------- 295 (409)
.+.+.+++.++++.|++.++. +|+ +| ....++.-.+++ ++..++||..-=++
T Consensus 226 ~~~~~g~~~~e~~~~~~~l~~~gvd--~i~vs~g~~~~~~~~~~~~~~~~~~----k~~~~~pv~~~G~i~~~~~~~~~~ 299 (361)
T cd04747 226 YTARLADTPDELEALLAPLVDAGVD--IFHCSTRRFWEPEFEGSELNLAGWT----KKLTGLPTITVGSVGLDGDFIGAF 299 (361)
T ss_pred cccCCCCCHHHHHHHHHHHHHcCCC--EEEecCCCccCCCcCccchhHHHHH----HHHcCCCEEEECCccccccccccc
Confidence 147889999999999988764 453 22 222222222233 34567898876555
Q ss_pred --------CCHHHHHHHHHcCCCCEEE
Q 015289 296 --------RSLDDVKKIVKGNLADVIN 314 (409)
Q Consensus 296 --------~~~~~~~~~i~~~a~div~ 314 (409)
.++++..++++.+.+|.|.
T Consensus 300 ~~~~~~~~~~~~~a~~~l~~g~~D~V~ 326 (361)
T cd04747 300 AGDEGASPASLDRLLERLERGEFDLVA 326 (361)
T ss_pred ccccccccCCHHHHHHHHHCCCCCeeh
Confidence 5889999999999899874
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.13 Score=50.68 Aligned_cols=141 Identities=13% Similarity=0.202 Sum_probs=96.5
Q ss_pred HhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCC----------------ChhHHHHHHHHHHhhCCCcE
Q 015289 168 LFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVHPDSS 231 (409)
Q Consensus 168 LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~d~~~l~avr~~~~~~~ 231 (409)
+|.-.....|+...+...+|+++++.++.+.+.||..+-|.+|- +++.-.+.+++++++. ++.
T Consensus 47 ~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~-~~P 125 (318)
T TIGR00742 47 ILKFSPEESPVALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAV-NIP 125 (318)
T ss_pred HcccCCCCCcEEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHh-CCC
Confidence 44433345566778888899999888888877899999999872 3444566788888753 223
Q ss_pred EEEeCCCCC----CHHHHHHHHHHHHhCCCCCceee--------cCCCC--------CCHHHHHHhHHHhhccC-CCeEE
Q 015289 232 FILDANEGY----KPQEAVEVLEKLYEMGVTPVLFE--------QPVHR--------DDWEGLGHVSHIAKDKF-GVSVA 290 (409)
Q Consensus 232 l~vDaN~~w----~~~~A~~~~~~L~~~~l~~~~iE--------eP~~~--------~d~~~~~~l~~~~~~~~-~ipIa 290 (409)
+.+=..-+| +.+.+.++++.+++.|+. +|. |-+.. -+|+..+++++ .. .+||.
T Consensus 126 VsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~--~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~----~~~~ipVi 199 (318)
T TIGR00742 126 VTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQ--NFIVHARKAWLSGLSPKENREIPPLRYERVYQLKK----DFPHLTIE 199 (318)
T ss_pred eEEEEecCCCCcchHHHHHHHHHHHHHcCCC--EEEEeCCchhhcCCCccccccCCchhHHHHHHHHH----hCCCCcEE
Confidence 333333333 346778999999988864 442 22221 25665566653 34 79999
Q ss_pred eCCCCCCHHHHHHHHHcCCCCEEEeCC
Q 015289 291 ADESCRSLDDVKKIVKGNLADVINIKL 317 (409)
Q Consensus 291 ~dEs~~~~~~~~~~i~~~a~div~~k~ 317 (409)
+.=.+.+.+|+.++++ .+|.+++=-
T Consensus 200 ~NGdI~s~~da~~~l~--g~dgVMigR 224 (318)
T TIGR00742 200 INGGIKNSEQIKQHLS--HVDGVMVGR 224 (318)
T ss_pred EECCcCCHHHHHHHHh--CCCEEEECH
Confidence 9889999999999886 489998743
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.11 Score=50.52 Aligned_cols=133 Identities=16% Similarity=0.208 Sum_probs=91.0
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecC------------CChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHH
Q 015289 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG------------KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQ 243 (409)
Q Consensus 176 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG------------~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~ 243 (409)
.|+..++...++++..+.++.+.+.|+..+-+.++ .+++.-.+.++++|+.. ++.+.+-.+. +.+
T Consensus 90 ~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~-~~Pv~vKl~~--~~~ 166 (296)
T cd04740 90 TPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT-DVPVIVKLTP--NVT 166 (296)
T ss_pred CcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc-CCCEEEEeCC--Cch
Confidence 35566666678888888888888889999999765 23444556788888864 4566665543 334
Q ss_pred HHHHHHHHHHhCCCCCceee---------------cCCC-------------CCCHHHHHHhHHHhhccCCCeEEeCCCC
Q 015289 244 EAVEVLEKLYEMGVTPVLFE---------------QPVH-------------RDDWEGLGHVSHIAKDKFGVSVAADESC 295 (409)
Q Consensus 244 ~A~~~~~~L~~~~l~~~~iE---------------eP~~-------------~~d~~~~~~l~~~~~~~~~ipIa~dEs~ 295 (409)
+..++++.+++.++. .|- .|.. +..++..++++ +..++||...=.+
T Consensus 167 ~~~~~a~~~~~~G~d--~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~----~~~~ipii~~GGI 240 (296)
T cd04740 167 DIVEIARAAEEAGAD--GLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVY----KAVEIPIIGVGGI 240 (296)
T ss_pred hHHHHHHHHHHcCCC--EEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHH----HhcCCCEEEECCC
Confidence 667888888887753 221 1210 11123334443 3568999999999
Q ss_pred CCHHHHHHHHHcCCCCEEEeCCC
Q 015289 296 RSLDDVKKIVKGNLADVINIKLA 318 (409)
Q Consensus 296 ~~~~~~~~~i~~~a~div~~k~~ 318 (409)
.+.+++.++++.| +|.|++=-.
T Consensus 241 ~~~~da~~~l~~G-Ad~V~igra 262 (296)
T cd04740 241 ASGEDALEFLMAG-ASAVQVGTA 262 (296)
T ss_pred CCHHHHHHHHHcC-CCEEEEchh
Confidence 9999999999988 699987533
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.096 Score=57.77 Aligned_cols=144 Identities=20% Similarity=0.284 Sum_probs=92.3
Q ss_pred HHHHHHHHHHcCCCeEEEecCC---------------------C----hhHHHHHHHHHHhh-CCCcEEE--EeC----C
Q 015289 190 AAELASKYRKQGFTTLKLKVGK---------------------N----LKEDIEVLRAIRAV-HPDSSFI--LDA----N 237 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~----~~~d~~~l~avr~~-~~~~~l~--vDa----N 237 (409)
+++.++++++.||..|-|..+. + ++--++.+++||++ ++++.|. +-+ .
T Consensus 553 f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~ 632 (765)
T PRK08255 553 FVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVE 632 (765)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccC
Confidence 3555667778999999998761 1 22345788999997 6775433 332 3
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCceeec--------CCCCCCHHHH-HHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcC
Q 015289 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQ--------PVHRDDWEGL-GHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 308 (409)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iEe--------P~~~~d~~~~-~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~ 308 (409)
++|+.++++++++.|++.++. ||+= +.+.. -..+ ..+++.+++..++||..-=.+.++.+..++++.+
T Consensus 633 ~g~~~~~~~~~~~~l~~~g~d--~i~vs~g~~~~~~~~~~-~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g 709 (765)
T PRK08255 633 GGNTPDDAVEIARAFKAAGAD--LIDVSSGQVSKDEKPVY-GRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAG 709 (765)
T ss_pred CCCCHHHHHHHHHHHHhcCCc--EEEeCCCCCCcCCCCCc-CccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcC
Confidence 578999999999999998864 5541 11000 0001 1122223446789999988999999999999999
Q ss_pred CCCEEEeCCCCCcHHHHHHHHHHHHHcCCc
Q 015289 309 LADVINIKLAKVGVLGALEIIEVVRASGLN 338 (409)
Q Consensus 309 a~div~~k~~~~Gi~~~~~i~~~A~~~gi~ 338 (409)
.+|.|.+=-.. +..--=+...+++.++.
T Consensus 710 ~~D~v~~gR~~--l~dP~~~~~~~~~~~~~ 737 (765)
T PRK08255 710 RADLCALARPH--LADPAWTLHEAAEIGYR 737 (765)
T ss_pred CcceeeEcHHH--HhCccHHHHHHHHcCCC
Confidence 99998552111 11111234446666665
|
|
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.12 Score=51.85 Aligned_cols=123 Identities=14% Similarity=0.191 Sum_probs=80.7
Q ss_pred HHHHHHHHHHcCCCeEEEecCC---------------------C----hhHHHHHHHHHHhh-CCCc-EEEEe-------
Q 015289 190 AAELASKYRKQGFTTLKLKVGK---------------------N----LKEDIEVLRAIRAV-HPDS-SFILD------- 235 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~----~~~d~~~l~avr~~-~~~~-~l~vD------- 235 (409)
.++.|+.+++.||..+-|+.+. + .+--++.+++||++ +++. .+++-
T Consensus 161 f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~ 240 (362)
T PRK10605 161 FRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNN 240 (362)
T ss_pred HHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCcccccc
Confidence 3556677788999999999751 1 12345788999997 6653 44442
Q ss_pred CCCCCCHHH-HHHHHHHHHhCCCCCceeecCCCCC--CHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCE
Q 015289 236 ANEGYKPQE-AVEVLEKLYEMGVTPVLFEQPVHRD--DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADV 312 (409)
Q Consensus 236 aN~~w~~~~-A~~~~~~L~~~~l~~~~iEeP~~~~--d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~di 312 (409)
..++++.++ ++++++.|++.++. +|+=-.... ...-...+++..++.+++||...-. .+++...++++.|.+|.
T Consensus 241 ~~~G~~~~e~~~~~~~~L~~~giD--~i~vs~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~-~~~~~ae~~i~~G~~D~ 317 (362)
T PRK10605 241 VDNGPNEEADALYLIEQLGKRGIA--YLHMSEPDWAGGEPYSDAFREKVRARFHGVIIGAGA-YTAEKAETLIGKGLIDA 317 (362)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCC--EEEeccccccCCccccHHHHHHHHHHCCCCEEEeCC-CCHHHHHHHHHcCCCCE
Confidence 234688888 89999999998764 665221100 0000112222334467888888655 48999999999999999
Q ss_pred EEe
Q 015289 313 INI 315 (409)
Q Consensus 313 v~~ 315 (409)
|-+
T Consensus 318 V~~ 320 (362)
T PRK10605 318 VAF 320 (362)
T ss_pred EEE
Confidence 744
|
|
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.13 Score=50.99 Aligned_cols=119 Identities=18% Similarity=0.215 Sum_probs=81.1
Q ss_pred HHHHHHHHHHcCCCeEEEecCC---------------------Ch----hHHHHHHHHHHhhCC-CcEEEEe----CCCC
Q 015289 190 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAVHP-DSSFILD----ANEG 239 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~d~~~l~avr~~~~-~~~l~vD----aN~~ 239 (409)
..+.++.+++.||..+.|..+. ++ +--.+.+++||++.+ -+.+++- .+++
T Consensus 144 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G 223 (337)
T PRK13523 144 FKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGG 223 (337)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCC
Confidence 3455667778899999999761 12 223467888888642 2333333 3457
Q ss_pred CCHHHHHHHHHHHHhCCCCCceeec--------CCC---CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcC
Q 015289 240 YKPQEAVEVLEKLYEMGVTPVLFEQ--------PVH---RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 308 (409)
Q Consensus 240 w~~~~A~~~~~~L~~~~l~~~~iEe--------P~~---~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~ 308 (409)
++.++++++++.|++.++. ||+= +.. ..+++..+++ ++..++||...=.+.++++..++++.+
T Consensus 224 ~~~~e~~~i~~~l~~~gvD--~i~vs~g~~~~~~~~~~~~~~~~~~~~i----k~~~~ipVi~~G~i~~~~~a~~~l~~g 297 (337)
T PRK13523 224 LTVQDYVQYAKWMKEQGVD--LIDVSSGAVVPARIDVYPGYQVPFAEHI----REHANIATGAVGLITSGAQAEEILQNN 297 (337)
T ss_pred CCHHHHHHHHHHHHHcCCC--EEEeCCCCCCCCCCCCCccccHHHHHHH----HhhcCCcEEEeCCCCCHHHHHHHHHcC
Confidence 8999999999999998764 5531 111 1123333334 446789998888889999999999999
Q ss_pred CCCEEE
Q 015289 309 LADVIN 314 (409)
Q Consensus 309 a~div~ 314 (409)
.+|.|.
T Consensus 298 ~~D~V~ 303 (337)
T PRK13523 298 RADLIF 303 (337)
T ss_pred CCChHH
Confidence 899873
|
|
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.14 Score=51.32 Aligned_cols=125 Identities=21% Similarity=0.244 Sum_probs=83.1
Q ss_pred HHHHHHHHHHcCCCeEEEecCC---------------------C----hhHHHHHHHHHHhh-CCCc--EEEEeC----C
Q 015289 190 AAELASKYRKQGFTTLKLKVGK---------------------N----LKEDIEVLRAIRAV-HPDS--SFILDA----N 237 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~----~~~d~~~l~avr~~-~~~~--~l~vDa----N 237 (409)
..+.++++++.||..+.|+-.. + .+--+|.+++||++ +++. .+++=+ +
T Consensus 151 f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~ 230 (363)
T COG1902 151 FARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFD 230 (363)
T ss_pred HHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCC
Confidence 3556677788999999999641 1 23456789999998 6764 444332 2
Q ss_pred -CCCCHHHHHHHHHHHHhCC-CCCcee----ecCCCCCCHH--HH-HHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcC
Q 015289 238 -EGYKPQEAVEVLEKLYEMG-VTPVLF----EQPVHRDDWE--GL-GHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 308 (409)
Q Consensus 238 -~~w~~~~A~~~~~~L~~~~-l~~~~i----EeP~~~~d~~--~~-~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~ 308 (409)
.+|+.+++.++++.|++.+ +....+ .++-..-... ++ ...+...+....+|+.+--.+++++...++++.|
T Consensus 231 ~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g 310 (363)
T COG1902 231 GGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASG 310 (363)
T ss_pred CCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcC
Confidence 3789999999999999988 432122 2221111111 11 1222112335679999998999999999999999
Q ss_pred CCCEEE
Q 015289 309 LADVIN 314 (409)
Q Consensus 309 a~div~ 314 (409)
.+|.|-
T Consensus 311 ~aDlVa 316 (363)
T COG1902 311 RADLVA 316 (363)
T ss_pred CCCEEE
Confidence 889873
|
|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.2 Score=48.71 Aligned_cols=155 Identities=16% Similarity=0.198 Sum_probs=99.3
Q ss_pred eeeeeecCCCHHHHHHHHHHHHHc--CCCeEEEecC------------CChhHHHHHHHHHHhhCCCcEEEEeCCCCCCH
Q 015289 177 TTDITIPIVSPAEAAELASKYRKQ--GFTTLKLKVG------------KNLKEDIEVLRAIRAVHPDSSFILDANEGYKP 242 (409)
Q Consensus 177 ~~~~~i~~~~~~~~~~~~~~~~~~--Gf~~~KiKvG------------~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~ 242 (409)
|+..++...+++++.+.++.+.+. ++..+-+.+| .+++.-.+.++++|+.. ++.+.+.-+. +.
T Consensus 92 pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~-~~pv~vKi~~--~~ 168 (300)
T TIGR01037 92 PLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT-DVPVFAKLSP--NV 168 (300)
T ss_pred cEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEECCC--Ch
Confidence 455666667888988887777654 3889999887 13444566788888764 4667777764 44
Q ss_pred HHHHHHHHHHHhCCCCCceee---------------cCCCCC---------CH-HHHHHhHHHhhccCCCeEEeCCCCCC
Q 015289 243 QEAVEVLEKLYEMGVTPVLFE---------------QPVHRD---------DW-EGLGHVSHIAKDKFGVSVAADESCRS 297 (409)
Q Consensus 243 ~~A~~~~~~L~~~~l~~~~iE---------------eP~~~~---------d~-~~~~~l~~~~~~~~~ipIa~dEs~~~ 297 (409)
++..++++.+++.++. +|. +|.... .+ -.++.+.+ +++..++||.+.=.+.+
T Consensus 169 ~~~~~~a~~l~~~G~d--~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~-i~~~~~ipvi~~GGI~s 245 (300)
T TIGR01037 169 TDITEIAKAAEEAGAD--GLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYD-VYKMVDIPIIGVGGITS 245 (300)
T ss_pred hhHHHHHHHHHHcCCC--EEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHH-HHhcCCCCEEEECCCCC
Confidence 5778899999998864 442 110000 00 01122222 23467899999999999
Q ss_pred HHHHHHHHHcCCCCEEEeCCCCC--c--HHHH-HHHHHHHHHcCCc
Q 015289 298 LDDVKKIVKGNLADVINIKLAKV--G--VLGA-LEIIEVVRASGLN 338 (409)
Q Consensus 298 ~~~~~~~i~~~a~div~~k~~~~--G--i~~~-~~i~~~A~~~gi~ 338 (409)
.+++.++++.| +|.+++=-.-+ | +... ..+.++.+++|+.
T Consensus 246 ~~da~~~l~~G-Ad~V~igr~~l~~p~~~~~i~~~l~~~~~~~g~~ 290 (300)
T TIGR01037 246 FEDALEFLMAG-ASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEGFT 290 (300)
T ss_pred HHHHHHHHHcC-CCceeecHHHhcCchHHHHHHHHHHHHHHHcCCC
Confidence 99999999987 89988643322 2 2222 3455666677654
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.15 Score=50.95 Aligned_cols=119 Identities=17% Similarity=0.267 Sum_probs=79.4
Q ss_pred HHHHHHHHHHcCCCeEEEecCC---------------------Ch----hHHHHHHHHHHhh-C----CCcEEEE--eC-
Q 015289 190 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-H----PDSSFIL--DA- 236 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~d~~~l~avr~~-~----~~~~l~v--Da- 236 (409)
+++.++++++.||..+-|..+. ++ +--.+.+++||++ + +++.+.+ ..
T Consensus 146 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~ 225 (353)
T cd04735 146 FGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPE 225 (353)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcc
Confidence 4555677778999999998641 12 2235678899997 6 5665444 32
Q ss_pred ---CCCCCHHHHHHHHHHHHhCCCCCceee-------cCCC---CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHH
Q 015289 237 ---NEGYKPQEAVEVLEKLYEMGVTPVLFE-------QPVH---RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 303 (409)
Q Consensus 237 ---N~~w~~~~A~~~~~~L~~~~l~~~~iE-------eP~~---~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~ 303 (409)
.++++.++++++++.|++.++. ||+ .+.. ....+..+++++.. ..++||...=.+.++++..+
T Consensus 226 ~~~~~g~~~ee~~~i~~~L~~~GvD--~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~--~~~iPVi~~Ggi~t~e~ae~ 301 (353)
T cd04735 226 EPEEPGIRMEDTLALVDKLADKGLD--YLHISLWDFDRKSRRGRDDNQTIMELVKERI--AGRLPLIAVGSINTPDDALE 301 (353)
T ss_pred cccCCCCCHHHHHHHHHHHHHcCCC--EEEeccCccccccccCCcchHHHHHHHHHHh--CCCCCEEEECCCCCHHHHHH
Confidence 3467899999999999999874 665 1111 11223334443311 13689998878899999999
Q ss_pred HHHcCCCCEE
Q 015289 304 IVKGNLADVI 313 (409)
Q Consensus 304 ~i~~~a~div 313 (409)
+++.+ +|.|
T Consensus 302 ~l~~g-aD~V 310 (353)
T cd04735 302 ALETG-ADLV 310 (353)
T ss_pred HHHcC-CChH
Confidence 99885 7775
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.47 Score=47.11 Aligned_cols=119 Identities=13% Similarity=0.168 Sum_probs=81.2
Q ss_pred HHHHHHHHHHcCCCeEEEecCC---------------------C----hhHHHHHHHHHHhh-CCC-cEEEEeCC-----
Q 015289 190 AAELASKYRKQGFTTLKLKVGK---------------------N----LKEDIEVLRAIRAV-HPD-SSFILDAN----- 237 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~----~~~d~~~l~avr~~-~~~-~~l~vDaN----- 237 (409)
..+.++.+++.||..+.|..+. + .+--.+.+++||+. +++ +.+++-+.
T Consensus 154 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~ 233 (338)
T cd02933 154 FRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFND 233 (338)
T ss_pred HHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCC
Confidence 3555677778899999998762 1 22345788999986 554 34444332
Q ss_pred --CCCCHHHHHHHHHHHHhCCCCCceeec--CC-----CCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcC
Q 015289 238 --EGYKPQEAVEVLEKLYEMGVTPVLFEQ--PV-----HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 308 (409)
Q Consensus 238 --~~w~~~~A~~~~~~L~~~~l~~~~iEe--P~-----~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~ 308 (409)
.+.+.++++++++.|++.++. +|+= .. ...+++..++++ +.+++||..-=.+. +.+..++++.+
T Consensus 234 ~~~~~~~ee~~~~~~~l~~~g~d--~i~vs~g~~~~~~~~~~~~~~~~ik----~~~~ipvi~~G~i~-~~~a~~~l~~g 306 (338)
T cd02933 234 MGDSDPEATFSYLAKELNKRGLA--YLHLVEPRVAGNPEDQPPDFLDFLR----KAFKGPLIAAGGYD-AESAEAALADG 306 (338)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCc--EEEEecCCCCCcccccchHHHHHHH----HHcCCCEEEECCCC-HHHHHHHHHcC
Confidence 135889999999999988753 5542 10 122344444454 35789999877776 88999999999
Q ss_pred CCCEEEe
Q 015289 309 LADVINI 315 (409)
Q Consensus 309 a~div~~ 315 (409)
.+|.|.+
T Consensus 307 ~~D~V~~ 313 (338)
T cd02933 307 KADLVAF 313 (338)
T ss_pred CCCEEEe
Confidence 8999854
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.58 Score=47.07 Aligned_cols=121 Identities=18% Similarity=0.150 Sum_probs=80.0
Q ss_pred HHHHHHHHHHcCCCeEEEecCC---------------------C----hhHHHHHHHHHHhh-CCCc--EEEEeCC----
Q 015289 190 AAELASKYRKQGFTTLKLKVGK---------------------N----LKEDIEVLRAIRAV-HPDS--SFILDAN---- 237 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~----~~~d~~~l~avr~~-~~~~--~l~vDaN---- 237 (409)
+++.++++++.||..+-|+.+. + .+--.+.+++||++ ++++ .+++-+.
T Consensus 152 f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~ 231 (370)
T cd02929 152 YVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIG 231 (370)
T ss_pred HHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcC
Confidence 4556677788999999998762 1 12345789999997 6775 4444332
Q ss_pred --CCCCHHHHHHHHHHHHhCCCC-----CceeecC-CC----CC--CHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHH
Q 015289 238 --EGYKPQEAVEVLEKLYEMGVT-----PVLFEQP-VH----RD--DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 303 (409)
Q Consensus 238 --~~w~~~~A~~~~~~L~~~~l~-----~~~iEeP-~~----~~--d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~ 303 (409)
+.++.++++++++.|++. +. .-+++.. .. +. .++..+++ ++..++||..-=.+.++.+..+
T Consensus 232 ~~g~~~~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~i----k~~~~~pvi~~G~i~~~~~~~~ 306 (370)
T cd02929 232 PGGIESEGEGVEFVEMLDEL-PDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFV----KQVTSKPVVGVGRFTSPDKMVE 306 (370)
T ss_pred CCCCCCHHHHHHHHHHHHhh-CCEEEecCCCccccccccccCCccccHHHHHHH----HHHCCCCEEEeCCCCCHHHHHH
Confidence 237899999999999873 11 0012211 10 11 12222233 3467899998888999999999
Q ss_pred HHHcCCCCEEEe
Q 015289 304 IVKGNLADVINI 315 (409)
Q Consensus 304 ~i~~~a~div~~ 315 (409)
+++.+.+|.|.+
T Consensus 307 ~l~~g~~D~V~~ 318 (370)
T cd02929 307 VVKSGILDLIGA 318 (370)
T ss_pred HHHcCCCCeeee
Confidence 999999999854
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.36 Score=44.28 Aligned_cols=97 Identities=11% Similarity=0.209 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHhCCCCCceeecCCCCCC-HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC
Q 015289 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 319 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~ 319 (409)
+.+++.+.++.|-+.|++ .+|=++...+ ++.++++++. .-++.|.+| ++.+.++++++++.|+ +++ +-|+.
T Consensus 18 ~~e~a~~~~~al~~~Gi~--~iEit~~t~~a~~~i~~l~~~---~~~~~vGAG-TVl~~~~a~~a~~aGA-~Fi-vsP~~ 89 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLR--VLEVTLRTPVALDAIRLLRKE---VPDALIGAG-TVLNPEQLRQAVDAGA-QFI-VSPGL 89 (204)
T ss_pred CHHHHHHHHHHHHHcCCC--EEEEeCCCccHHHHHHHHHHH---CCCCEEEEE-eCCCHHHHHHHHHcCC-CEE-ECCCC
Confidence 799999999999999986 9999998654 3335555431 223555554 7899999999999985 776 22222
Q ss_pred CcHHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 015289 320 VGVLGALEIIEVVRASGLNLMIGGMVETRLA 350 (409)
Q Consensus 320 ~Gi~~~~~i~~~A~~~gi~~~~~~~~es~i~ 350 (409)
..++++.|+++|+++++|++.-|.+.
T Consensus 90 -----~~~v~~~~~~~~i~~iPG~~TptEi~ 115 (204)
T TIGR01182 90 -----TPELAKHAQDHGIPIIPGVATPSEIM 115 (204)
T ss_pred -----CHHHHHHHHHcCCcEECCCCCHHHHH
Confidence 25788999999999999998765544
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.65 Score=43.88 Aligned_cols=105 Identities=18% Similarity=0.191 Sum_probs=78.8
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCeEEEe-------cC-------CChhHHHHHHHHHHhhC---CCcEE--EEeCCCC--C
Q 015289 182 IPIVSPAEAAELASKYRKQGFTTLKLK-------VG-------KNLKEDIEVLRAIRAVH---PDSSF--ILDANEG--Y 240 (409)
Q Consensus 182 i~~~~~~~~~~~~~~~~~~Gf~~~KiK-------vG-------~~~~~d~~~l~avr~~~---~~~~l--~vDaN~~--w 240 (409)
.+..+++++.+.++++.+.|...+|+. .| .+.++-++++++++++. +++.| +.|+-.. .
T Consensus 78 ~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~ 157 (243)
T cd00377 78 TGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEE 157 (243)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCC
Confidence 344577778888889999999999992 22 25677788999999863 35544 5677544 6
Q ss_pred CHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCC
Q 015289 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE 293 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dE 293 (409)
+.++|++.++...+.|-...|+|-|. +.+.++++.+ +.+.||..--
T Consensus 158 ~~~eai~Ra~ay~~AGAD~v~v~~~~---~~~~~~~~~~----~~~~Pl~~~~ 203 (243)
T cd00377 158 GLDEAIERAKAYAEAGADGIFVEGLK---DPEEIRAFAE----APDVPLNVNM 203 (243)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCC---CHHHHHHHHh----cCCCCEEEEe
Confidence 89999999999999987767999777 5566777764 5678888753
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.69 Score=43.89 Aligned_cols=153 Identities=16% Similarity=0.135 Sum_probs=99.7
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCC--CcEEEEeCCCC--------------
Q 015289 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP--DSSFILDANEG-------------- 239 (409)
Q Consensus 176 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~--~~~l~vDaN~~-------------- 239 (409)
+|+....++.+.+++ +++...|... +-+|...-++.+.++.+.+.++ .+.+.+|++..
T Consensus 75 ~pv~~~GGi~s~~d~----~~~~~~Ga~~--vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~g 148 (254)
T TIGR00735 75 IPLTVGGGIKSIEDV----DKLLRAGADK--VSINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYG 148 (254)
T ss_pred CCEEEECCCCCHHHH----HHHHHcCCCE--EEEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeC
Confidence 344445556666655 4445567554 4667555567788888887753 57889997532
Q ss_pred C---CHHHHHHHHHHHHhCCCCCceeecCCC------CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCC
Q 015289 240 Y---KPQEAVEVLEKLYEMGVTPVLFEQPVH------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA 310 (409)
Q Consensus 240 w---~~~~A~~~~~~L~~~~l~~~~iEeP~~------~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~ 310 (409)
| +..+..++++.+++.++...-+ ..+. .-|++.++++++ .+++||.+.=-+.++.++.++++.+.+
T Consensus 149 w~~~~~~~~~~~~~~l~~~G~~~iiv-t~i~~~g~~~g~~~~~~~~i~~----~~~ipvia~GGi~s~~di~~~~~~g~~ 223 (254)
T TIGR00735 149 GRESTGLDAVEWAKEVEKLGAGEILL-TSMDKDGTKSGYDLELTKAVSE----AVKIPVIASGGAGKPEHFYEAFTKGKA 223 (254)
T ss_pred CcccCCCCHHHHHHHHHHcCCCEEEE-eCcCcccCCCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcCCc
Confidence 2 1345578889999888651112 1122 234666666653 578999998889999999999998878
Q ss_pred CEEEeCCC-CCcHHHHHHHHHHHHHcCCcE
Q 015289 311 DVINIKLA-KVGVLGALEIIEVVRASGLNL 339 (409)
Q Consensus 311 div~~k~~-~~Gi~~~~~i~~~A~~~gi~~ 339 (409)
|.+.+--. .-|-.....+.+.++++|+++
T Consensus 224 dgv~~g~a~~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 224 DAALAASVFHYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred ceeeEhHHHhCCCCCHHHHHHHHHHCCCcc
Confidence 88765322 234223456678888888874
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.49 Score=43.35 Aligned_cols=99 Identities=14% Similarity=0.156 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCceeecCCCCCC-HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 015289 240 YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (409)
Q Consensus 240 w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~ 318 (409)
-+.+++.+.++.|-+.|+. .+|=++...+ ++.++++++ +.-++-|.+| ++.+.++++++++.|+ +++.- |+
T Consensus 13 ~~~~~a~~ia~al~~gGi~--~iEit~~tp~a~~~I~~l~~---~~~~~~vGAG-TVl~~e~a~~ai~aGA-~FivS-P~ 84 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLP--AIEITLRTPAALDAIRAVAA---EVEEAIVGAG-TILNAKQFEDAAKAGS-RFIVS-PG 84 (201)
T ss_pred CCHHHHHHHHHHHHHCCCC--EEEEeCCCccHHHHHHHHHH---HCCCCEEeeE-eCcCHHHHHHHHHcCC-CEEEC-CC
Confidence 3789999999999999986 9999988554 333455543 1223444443 7899999999999985 77632 22
Q ss_pred CCcHHHHHHHHHHHHHcCCcEEEccCCchHHHH
Q 015289 319 KVGVLGALEIIEVVRASGLNLMIGGMVETRLAM 351 (409)
Q Consensus 319 ~~Gi~~~~~i~~~A~~~gi~~~~~~~~es~i~~ 351 (409)
.. .++++.|+++|++++||++.-|.+-.
T Consensus 85 ~~-----~~vi~~a~~~~i~~iPG~~TptEi~~ 112 (201)
T PRK06015 85 TT-----QELLAAANDSDVPLLPGAATPSEVMA 112 (201)
T ss_pred CC-----HHHHHHHHHcCCCEeCCCCCHHHHHH
Confidence 21 57789999999999999997666543
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.68 Score=43.10 Aligned_cols=100 Identities=15% Similarity=0.145 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHhCCCCCceeecCCCCC-CHHHHHHhHHHhhccC-CCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 015289 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRD-DWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~-d~~~~~~l~~~~~~~~-~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~ 318 (409)
+.++|.+.++.|-+.|+. .+|=.+... -.+.+++|++.++++. ++-|.+ =++.+.++++.+++.|+ +++.- |+
T Consensus 25 ~~~~a~~~~~al~~gGi~--~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGa-GTVl~~e~a~~a~~aGA-~FiVs-P~ 99 (222)
T PRK07114 25 DVEVAKKVIKACYDGGAR--VFEFTNRGDFAHEVFAELVKYAAKELPGMILGV-GSIVDAATAALYIQLGA-NFIVT-PL 99 (222)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEee-EeCcCHHHHHHHHHcCC-CEEEC-CC
Confidence 799999999999999986 899998754 3455566643222222 233433 37899999999999985 77632 22
Q ss_pred CCcHHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 015289 319 KVGVLGALEIIEVVRASGLNLMIGGMVETRLA 350 (409)
Q Consensus 319 ~~Gi~~~~~i~~~A~~~gi~~~~~~~~es~i~ 350 (409)
.. ..+++.|+++|++++||++.-|.+-
T Consensus 100 ~~-----~~v~~~~~~~~i~~iPG~~TpsEi~ 126 (222)
T PRK07114 100 FN-----PDIAKVCNRRKVPYSPGCGSLSEIG 126 (222)
T ss_pred CC-----HHHHHHHHHcCCCEeCCCCCHHHHH
Confidence 21 5778999999999999998755543
|
|
| >COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.38 Score=46.80 Aligned_cols=111 Identities=17% Similarity=0.258 Sum_probs=76.8
Q ss_pred CCCcEEEEeC--CCC-CCHHHHHHHHHHHHhCCCCCceeecCCCC-CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHH
Q 015289 227 HPDSSFILDA--NEG-YKPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVK 302 (409)
Q Consensus 227 ~~~~~l~vDa--N~~-w~~~~A~~~~~~L~~~~l~~~~iEeP~~~-~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~ 302 (409)
|.|..+.+-. |.. -+.+...+.+++|++.|-++ +==-++. ++.+.+++++ +++.+|+.+|=... ..-+.
T Consensus 17 GgdaPI~VQSMTnT~T~Dv~aTv~QI~~L~~aG~dI--VRvtv~~~e~A~A~~~Ik----~~~~vPLVaDiHf~-~rla~ 89 (361)
T COG0821 17 GGDAPIVVQSMTNTDTADVEATVAQIKALERAGCDI--VRVTVPDMEAAEALKEIK----QRLNVPLVADIHFD-YRLAL 89 (361)
T ss_pred cCCCceEEEeccCCCcccHHHHHHHHHHHHHcCCCE--EEEecCCHHHHHHHHHHH----HhCCCCEEEEeecc-HHHHH
Confidence 4455555432 221 24555667788888887653 3322332 3455566665 47899999998766 65566
Q ss_pred HHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCC
Q 015289 303 KIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV 345 (409)
Q Consensus 303 ~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~ 345 (409)
..++.+ +|-+.+.|+.+| -.+...+++.|+++|+++-+|-..
T Consensus 90 ~~~~~g-~~k~RINPGNig~~~~v~~vVe~Ak~~g~piRIGVN~ 132 (361)
T COG0821 90 EAAECG-VDKVRINPGNIGFKDRVREVVEAAKDKGIPIRIGVNA 132 (361)
T ss_pred HhhhcC-cceEEECCcccCcHHHHHHHHHHHHHcCCCEEEeccc
Confidence 666665 899999999999 567889999999999999886543
|
|
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.79 Score=43.73 Aligned_cols=99 Identities=16% Similarity=0.099 Sum_probs=69.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCCceeec--------------CCCCCCHHHHHHhHHHhhccCCCeEE--eCCCCCCHHHHH
Q 015289 239 GYKPQEAVEVLEKLYEMGVTPVLFEQ--------------PVHRDDWEGLGHVSHIAKDKFGVSVA--ADESCRSLDDVK 302 (409)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~iEe--------------P~~~~d~~~~~~l~~~~~~~~~ipIa--~dEs~~~~~~~~ 302 (409)
.|+.++.+++++.|.+.|+. .||= |...++++.++++++. ..+..++ ..-...+..++.
T Consensus 18 ~~~~~~k~~i~~~L~~~Gv~--~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~---~~~~~~~~~~~~~~~~~~~i~ 92 (263)
T cd07943 18 QFTLEQVRAIARALDAAGVP--LIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEA---LKQAKLGVLLLPGIGTVDDLK 92 (263)
T ss_pred ecCHHHHHHHHHHHHHcCCC--EEEeecCCCCCCcccccCCCCCChHHHHHHHHHh---ccCCEEEEEecCCccCHHHHH
Confidence 46789999999999999985 8887 5556677777777542 1234443 223345678888
Q ss_pred HHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEEEcc
Q 015289 303 KIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGG 343 (409)
Q Consensus 303 ~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~~~~ 343 (409)
+..+.+ +|.+++-....=.....++++.|++.|+.+.+.-
T Consensus 93 ~a~~~g-~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~ 132 (263)
T cd07943 93 MAADLG-VDVVRVATHCTEADVSEQHIGAARKLGMDVVGFL 132 (263)
T ss_pred HHHHcC-CCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEE
Confidence 888765 7988774332114567889999999999886643
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=8.1 Score=40.37 Aligned_cols=168 Identities=17% Similarity=0.218 Sum_probs=104.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCCh--------hHHHHHHHHHHhhCCCcEEEEeCCC----CC---CHHHHHHHHH
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGKNL--------KEDIEVLRAIRAVHPDSSFILDANE----GY---KPQEAVEVLE 250 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~--------~~d~~~l~avr~~~~~~~l~vDaN~----~w---~~~~A~~~~~ 250 (409)
+.+++...+..+.+.||..+.+--|... +.+.++|+++|+..++..|..=..+ +| ..+-...+++
T Consensus 25 ~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~ 104 (499)
T PRK12330 25 AMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVE 104 (499)
T ss_pred CHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHHH
Confidence 6788888888888899999998644322 3678999999999888776543322 23 3333345788
Q ss_pred HHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCC---CeEEe-CCCCCCHHHH----HHHHHcCCCCEEEeCCCCCc-
Q 015289 251 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG---VSVAA-DESCRSLDDV----KKIVKGNLADVINIKLAKVG- 321 (409)
Q Consensus 251 ~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~---ipIa~-dEs~~~~~~~----~~~i~~~a~div~~k~~~~G- 321 (409)
...+.++.+..|=+|+. |.+.+....+..++.-. .-|+. .-..++.+.+ +++.+.| +|.+.++=+- |
T Consensus 105 ~a~~~Gidi~RIfd~ln--dv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~G-ad~I~IkDta-Gl 180 (499)
T PRK12330 105 KSAENGMDVFRVFDALN--DPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMG-ADSICIKDMA-AL 180 (499)
T ss_pred HHHHcCCCEEEEEecCC--hHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcC-CCEEEeCCCc-cC
Confidence 88888887777888887 55555554433332211 13332 1235566654 3455566 6888877553 5
Q ss_pred --HHHHHHHHHHHH-Hc--CCcEEEccCCchHHHHHHHHHHHc
Q 015289 322 --VLGALEIIEVVR-AS--GLNLMIGGMVETRLAMGFAGHLSA 359 (409)
Q Consensus 322 --i~~~~~i~~~A~-~~--gi~~~~~~~~es~i~~~~~~hlaa 359 (409)
..++.++....+ +. ++++.+|+....+++. +..++|
T Consensus 181 l~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~--An~laA 221 (499)
T PRK12330 181 LKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTL--VSLMKA 221 (499)
T ss_pred CCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHH--HHHHHH
Confidence 335555554444 44 6899998865445444 334444
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.51 E-value=1.1 Score=41.42 Aligned_cols=97 Identities=12% Similarity=0.199 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCceeecCCCCCC-HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCC
Q 015289 239 GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKL 317 (409)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~ 317 (409)
.-+.++|.+.++.|.+.|++ .||=++...+ .+.++++++ +..++-|.+| ++.+.++++..++.|+ +++.. |
T Consensus 23 ~~~~~~a~~i~~al~~~Gi~--~iEitl~~~~~~~~I~~l~~---~~p~~~IGAG-TVl~~~~a~~a~~aGA-~Fivs-P 94 (212)
T PRK05718 23 INKLEDAVPLAKALVAGGLP--VLEVTLRTPAALEAIRLIAK---EVPEALIGAG-TVLNPEQLAQAIEAGA-QFIVS-P 94 (212)
T ss_pred cCCHHHHHHHHHHHHHcCCC--EEEEecCCccHHHHHHHHHH---HCCCCEEEEe-eccCHHHHHHHHHcCC-CEEEC-C
Confidence 45799999999999999986 9999987654 333444543 2223555554 6778899999999985 77632 1
Q ss_pred CCCcHHHHHHHHHHHHHcCCcEEEccCCchH
Q 015289 318 AKVGVLGALEIIEVVRASGLNLMIGGMVETR 348 (409)
Q Consensus 318 ~~~Gi~~~~~i~~~A~~~gi~~~~~~~~es~ 348 (409)
|+.. .+++.|++++++++||++.-|.
T Consensus 95 ---~~~~--~vi~~a~~~~i~~iPG~~TptE 120 (212)
T PRK05718 95 ---GLTP--PLLKAAQEGPIPLIPGVSTPSE 120 (212)
T ss_pred ---CCCH--HHHHHHHHcCCCEeCCCCCHHH
Confidence 2233 7888999999999999985444
|
|
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.53 Score=46.75 Aligned_cols=126 Identities=22% Similarity=0.367 Sum_probs=79.1
Q ss_pred HHHHHHHHHHcCCCeEEEecCC---------------------Ch----hHHHHHHHHHHhh-CCCc--EEEEeCCC---
Q 015289 190 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDS--SFILDANE--- 238 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~d~~~l~avr~~-~~~~--~l~vDaN~--- 238 (409)
..+.++.+++.||..+-|+.+. ++ +--++.+++||+. +++. .+++-+..
T Consensus 151 f~~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~ 230 (341)
T PF00724_consen 151 FAQAARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVE 230 (341)
T ss_dssp HHHHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSST
T ss_pred HHHHHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccC
Confidence 3556677788999999999751 12 2346788999997 7775 66776654
Q ss_pred -CCCHHHHHHHHHHHHhCCCCCc------e--eecCCC--CCCHHHH--HHhHHHhhccCCCeEEeCCCCCCHHHHHHHH
Q 015289 239 -GYKPQEAVEVLEKLYEMGVTPV------L--FEQPVH--RDDWEGL--GHVSHIAKDKFGVSVAADESCRSLDDVKKIV 305 (409)
Q Consensus 239 -~w~~~~A~~~~~~L~~~~l~~~------~--iEeP~~--~~d~~~~--~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i 305 (409)
+++.++..++++.+++.++... + ...|.. +.+.... ..+++..++.+++||...-.+.+++...+++
T Consensus 231 ~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~l 310 (341)
T PF00724_consen 231 GGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPEQAEKAL 310 (341)
T ss_dssp TSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhcCceEEEEeeecchhhhHHHH
Confidence 3456777677777765432210 1 122322 1111100 0122223346789999998999998899999
Q ss_pred HcCCCCEEEe
Q 015289 306 KGNLADVINI 315 (409)
Q Consensus 306 ~~~a~div~~ 315 (409)
+.+.+|.|-+
T Consensus 311 ~~g~~DlV~~ 320 (341)
T PF00724_consen 311 EEGKADLVAM 320 (341)
T ss_dssp HTTSTSEEEE
T ss_pred hcCCceEeec
Confidence 9999999854
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.33 E-value=1.1 Score=41.20 Aligned_cols=95 Identities=15% Similarity=0.208 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHhCCCCCceeecCCCCCC-HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEE-EeCCC
Q 015289 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI-NIKLA 318 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div-~~k~~ 318 (409)
+.++|....+.|-+-|+. -||=|+...+ .+..+++++. .-++-|.+| ++.+.+++.++++.|+ +++ .|...
T Consensus 23 ~~e~a~~~a~Ali~gGi~--~IEITl~sp~a~e~I~~l~~~---~p~~lIGAG-TVL~~~q~~~a~~aGa-~fiVsP~~~ 95 (211)
T COG0800 23 DVEEALPLAKALIEGGIP--AIEITLRTPAALEAIRALAKE---FPEALIGAG-TVLNPEQARQAIAAGA-QFIVSPGLN 95 (211)
T ss_pred CHHHHHHHHHHHHHcCCC--eEEEecCCCCHHHHHHHHHHh---CcccEEccc-cccCHHHHHHHHHcCC-CEEECCCCC
Confidence 699999999999999986 8999998665 4445666542 223444443 7889999999999996 554 33222
Q ss_pred CCcHHHHHHHHHHHHHcCCcEEEccCCchHH
Q 015289 319 KVGVLGALEIIEVVRASGLNLMIGGMVETRL 349 (409)
Q Consensus 319 ~~Gi~~~~~i~~~A~~~gi~~~~~~~~es~i 349 (409)
.++++.|..+|++++||++.-|.+
T Consensus 96 -------~ev~~~a~~~~ip~~PG~~TptEi 119 (211)
T COG0800 96 -------PEVAKAANRYGIPYIPGVATPTEI 119 (211)
T ss_pred -------HHHHHHHHhCCCcccCCCCCHHHH
Confidence 577899999999999999864443
|
|
| >PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.98 Score=44.55 Aligned_cols=110 Identities=17% Similarity=0.267 Sum_probs=75.7
Q ss_pred CCCcEEEEeC--CCC-CCHHHHHHHHHHHHhCCCCCceeecCCCC-CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHH
Q 015289 227 HPDSSFILDA--NEG-YKPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVK 302 (409)
Q Consensus 227 ~~~~~l~vDa--N~~-w~~~~A~~~~~~L~~~~l~~~~iEeP~~~-~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~ 302 (409)
|.+..+.|-. |.. -+.+..++.+++|++.|-+ .+==-++. ++.+.++++. +++.+|+.+|=. ++..-+.
T Consensus 23 Gg~~Pi~VQSMt~t~T~Dv~atv~Qi~~L~~aGce--iVRvav~~~~~a~al~~I~----~~~~iPlvADIH-Fd~~lAl 95 (360)
T PRK00366 23 GGDAPIVVQSMTNTDTADVEATVAQIKRLARAGCE--IVRVAVPDMEAAAALPEIK----KQLPVPLVADIH-FDYRLAL 95 (360)
T ss_pred CCCCcEEEEecCCCCchhHHHHHHHHHHHHHcCCC--EEEEccCCHHHHHhHHHHH----HcCCCCEEEecC-CCHHHHH
Confidence 4455555542 222 2456667788888888864 34333332 2344455554 478999999866 5566666
Q ss_pred HHHHcCCCCEEEeCCCCCc-HH-HHHHHHHHHHHcCCcEEEccC
Q 015289 303 KIVKGNLADVINIKLAKVG-VL-GALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 303 ~~i~~~a~div~~k~~~~G-i~-~~~~i~~~A~~~gi~~~~~~~ 344 (409)
..++.| +|.+.+.|+.+| .. ...++++.|+++|+++-+|..
T Consensus 96 ~a~~~G-~~~iRINPGNig~~~~~v~~vv~~ak~~~ipIRIGvN 138 (360)
T PRK00366 96 AAAEAG-ADALRINPGNIGKRDERVREVVEAAKDYGIPIRIGVN 138 (360)
T ss_pred HHHHhC-CCEEEECCCCCCchHHHHHHHHHHHHHCCCCEEEecC
Confidence 677766 799999999998 45 568899999999999988654
|
|
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=92.97 E-value=6.3 Score=37.10 Aligned_cols=170 Identities=23% Similarity=0.257 Sum_probs=94.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCCh------hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCC
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGKNL------KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTP 259 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~------~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~ 259 (409)
+.++..+.++.+.+.|+..+-+-.+... ..+.+.++.+++.+++..+.+.+..+ .+.++.+.+.++.
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~------~~~i~~a~~~g~~- 89 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNR------EKGIERALEAGVD- 89 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCc------hhhHHHHHhCCcC-
Confidence 6777778888888889888877666444 56778889999987777776655443 3456666677654
Q ss_pred ceeecCCCCC--------------CHHHHHHhHHHhhccCCCeEEeCC-CC----CCHHHH----HHHHHcCCCCEEEeC
Q 015289 260 VLFEQPVHRD--------------DWEGLGHVSHIAKDKFGVSVAADE-SC----RSLDDV----KKIVKGNLADVINIK 316 (409)
Q Consensus 260 ~~iEeP~~~~--------------d~~~~~~l~~~~~~~~~ipIa~dE-s~----~~~~~~----~~~i~~~a~div~~k 316 (409)
++-=+++.. +++...+..+.++ +.++.+...= .. .++..+ +.+.+.| +|.+.+.
T Consensus 90 -~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~-~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g-~~~i~l~ 166 (265)
T cd03174 90 -EVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAK-EAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAG-ADEISLK 166 (265)
T ss_pred -EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHH-HCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcC-CCEEEec
Confidence 333333332 2333322222222 3466665442 33 333333 3344455 6887776
Q ss_pred CCCCc-HH--HHHHHHHH-HHHcC-CcEEEccCCchHHHHHHHHHHHccCCCCceec
Q 015289 317 LAKVG-VL--GALEIIEV-VRASG-LNLMIGGMVETRLAMGFAGHLSAGLGCFKFID 368 (409)
Q Consensus 317 ~~~~G-i~--~~~~i~~~-A~~~g-i~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e 368 (409)
-+ .| .+ +..+++.. .+..+ +++.+|+....+ ++.+-.++|....+.++|
T Consensus 167 Dt-~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~g--la~an~laA~~aG~~~id 220 (265)
T cd03174 167 DT-VGLATPEEVAELVKALREALPDVPLGLHTHNTLG--LAVANSLAALEAGADRVD 220 (265)
T ss_pred hh-cCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCC--hHHHHHHHHHHcCCCEEE
Confidence 54 35 33 44555444 44455 777777754333 334444444333344544
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=92.81 E-value=2.2 Score=42.08 Aligned_cols=121 Identities=12% Similarity=0.108 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHcCCCeEEEecC----------CChhHHHHHHHHHHhhCC----CcEEEEeCCCCCCHHHHHHHHHHH
Q 015289 187 PAEAAELASKYRKQGFTTLKLKVG----------KNLKEDIEVLRAIRAVHP----DSSFILDANEGYKPQEAVEVLEKL 252 (409)
Q Consensus 187 ~~~~~~~~~~~~~~Gf~~~KiKvG----------~~~~~d~~~l~avr~~~~----~~~l~vDaN~~w~~~~A~~~~~~L 252 (409)
.++.++.++++. .+...+-+.++ .+++.-.+.++++|+... ++.+.+=....|+.++..++++.+
T Consensus 147 ~~d~~~~~~~~~-~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l 225 (327)
T cd04738 147 VEDYVIGVRKLG-PYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVA 225 (327)
T ss_pred HHHHHHHHHHHH-hhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHH
Confidence 456666665543 34678888775 123344467788888532 466666666667777888899999
Q ss_pred HhCCCCCceee--c----------CCCCC-------------CHHHHHHhHHHhhccC--CCeEEeCCCCCCHHHHHHHH
Q 015289 253 YEMGVTPVLFE--Q----------PVHRD-------------DWEGLGHVSHIAKDKF--GVSVAADESCRSLDDVKKIV 305 (409)
Q Consensus 253 ~~~~l~~~~iE--e----------P~~~~-------------d~~~~~~l~~~~~~~~--~ipIa~dEs~~~~~~~~~~i 305 (409)
++.|+. +|. - |.... .++..++++ +.. ++||.+.=.+.+.+|+.+++
T Consensus 226 ~~aGad--~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~----~~~~~~ipIi~~GGI~t~~da~e~l 299 (327)
T cd04738 226 LEHGVD--GIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELY----KLTGGKIPIIGVGGISSGEDAYEKI 299 (327)
T ss_pred HHcCCc--EEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHH----HHhCCCCcEEEECCCCCHHHHHHHH
Confidence 988764 443 1 11100 022233333 344 68999888899999999999
Q ss_pred HcCCCCEEEe
Q 015289 306 KGNLADVINI 315 (409)
Q Consensus 306 ~~~a~div~~ 315 (409)
..| +|.+|+
T Consensus 300 ~aG-Ad~V~v 308 (327)
T cd04738 300 RAG-ASLVQL 308 (327)
T ss_pred HcC-CCHHhc
Confidence 877 688876
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase | Back alignment and domain information |
|---|
Probab=92.65 E-value=1.1 Score=43.93 Aligned_cols=96 Identities=16% Similarity=0.200 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHhCCCCCceeecCCCC-CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC
Q 015289 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 319 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~-~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~ 319 (409)
+.+..++.+++|++.|-+ .+==-++. ++.+.++++. +.+.+|+.+|=... ..-....++.+ +|-+.+.|..
T Consensus 32 Dv~atv~QI~~L~~aGce--iVRvavp~~~~A~al~~I~----~~~~iPlVADIHFd-~~lAl~a~~~g-~dkiRINPGN 103 (346)
T TIGR00612 32 DIDSTVAQIRALEEAGCD--IVRVTVPDRESAAAFEAIK----EGTNVPLVADIHFD-YRLAALAMAKG-VAKVRINPGN 103 (346)
T ss_pred hHHHHHHHHHHHHHcCCC--EEEEcCCCHHHHHhHHHHH----hCCCCCEEEeeCCC-cHHHHHHHHhc-cCeEEECCCC
Confidence 456667788888888764 33333332 2344455554 47899999997754 33344455555 7999999999
Q ss_pred Cc-HHHHHHHHHHHHHcCCcEEEccC
Q 015289 320 VG-VLGALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 320 ~G-i~~~~~i~~~A~~~gi~~~~~~~ 344 (409)
+| -....++++.|+++|+++-+|-.
T Consensus 104 ig~~e~v~~vv~~ak~~~ipIRIGVN 129 (346)
T TIGR00612 104 IGFRERVRDVVEKARDHGKAMRIGVN 129 (346)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEecC
Confidence 99 66789999999999999988654
|
Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins. |
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=92.63 E-value=4.8 Score=39.14 Aligned_cols=132 Identities=16% Similarity=0.146 Sum_probs=83.9
Q ss_pred eeeeeecCC-CHHHHHHHHHHHHHcCCCeEEEecC-C--------------ChhHHHHHHHHHHhhCCCcEEEEeCCCCC
Q 015289 177 TTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVG-K--------------NLKEDIEVLRAIRAVHPDSSFILDANEGY 240 (409)
Q Consensus 177 ~~~~~i~~~-~~~~~~~~~~~~~~~Gf~~~KiKvG-~--------------~~~~d~~~l~avr~~~~~~~l~vDaN~~w 240 (409)
|+..++... +++++.+.++.+.+.|+..+-+.++ + +++.-.+.++++|+.. ++.+.+=-.-
T Consensus 101 p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~Pv~vKl~~-- 177 (299)
T cd02940 101 ILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV-KIPVIAKLTP-- 177 (299)
T ss_pred eEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhc-CCCeEEECCC--
Confidence 445555444 8888888888776678999999887 1 1223344566666642 2344444332
Q ss_pred CHHHHHHHHHHHHhCCCCCcee----------------ecCCC-----------------CCCHHHHHHhHHHhhccC--
Q 015289 241 KPQEAVEVLEKLYEMGVTPVLF----------------EQPVH-----------------RDDWEGLGHVSHIAKDKF-- 285 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~i----------------EeP~~-----------------~~d~~~~~~l~~~~~~~~-- 285 (409)
+.++..++++.+.+.++. .| +.|.. +-.++..++++ +..
T Consensus 178 ~~~~~~~~a~~~~~~Gad--gi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~----~~~~~ 251 (299)
T cd02940 178 NITDIREIARAAKEGGAD--GVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIA----RAPEP 251 (299)
T ss_pred CchhHHHHHHHHHHcCCC--EEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHH----HhcCC
Confidence 223556788888887754 22 22321 00134444444 356
Q ss_pred CCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 015289 286 GVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (409)
Q Consensus 286 ~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~ 318 (409)
.+||...=-+.+.+|+.+++..| +|.||+=-+
T Consensus 252 ~ipIig~GGI~~~~da~~~l~aG-A~~V~i~ta 283 (299)
T cd02940 252 GLPISGIGGIESWEDAAEFLLLG-ASVVQVCTA 283 (299)
T ss_pred CCcEEEECCCCCHHHHHHHHHcC-CChheEcee
Confidence 79999999999999999999977 588887543
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=92.41 E-value=1.9 Score=39.86 Aligned_cols=96 Identities=13% Similarity=0.107 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHhCCCCCceeecCCCCCC-HHHHHHhHHHhhccC----CCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKF----GVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~~~~~----~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
+.+++...++.|.+.|+. .+|=++...+ ++.++++++ +. ++-|.+| ++.+.++++++++.|+ +++.
T Consensus 23 ~~~~a~~~~~al~~~Gi~--~iEit~~~~~a~~~i~~l~~----~~~~~p~~~vGaG-TV~~~~~~~~a~~aGA-~Fiv- 93 (213)
T PRK06552 23 SKEEALKISLAVIKGGIK--AIEVTYTNPFASEVIKELVE----LYKDDPEVLIGAG-TVLDAVTARLAILAGA-QFIV- 93 (213)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEECCCccHHHHHHHHHH----HcCCCCCeEEeee-eCCCHHHHHHHHHcCC-CEEE-
Confidence 899999999999999986 8999988554 344555543 33 2444443 7899999999999985 7763
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 015289 316 KLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLA 350 (409)
Q Consensus 316 k~~~~Gi~~~~~i~~~A~~~gi~~~~~~~~es~i~ 350 (409)
-|+.. .++++.|+++|+++++|++..+.+-
T Consensus 94 sP~~~-----~~v~~~~~~~~i~~iPG~~T~~E~~ 123 (213)
T PRK06552 94 SPSFN-----RETAKICNLYQIPYLPGCMTVTEIV 123 (213)
T ss_pred CCCCC-----HHHHHHHHHcCCCEECCcCCHHHHH
Confidence 23222 5678889999999999998655543
|
|
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=92.05 E-value=14 Score=39.61 Aligned_cols=167 Identities=18% Similarity=0.239 Sum_probs=101.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCC--------hhHHHHHHHHHHhhCCCcEEEEeC---C----CCCCHHHHHHHHH
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGKN--------LKEDIEVLRAIRAVHPDSSFILDA---N----EGYKPQEAVEVLE 250 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~--------~~~d~~~l~avr~~~~~~~l~vDa---N----~~w~~~~A~~~~~ 250 (409)
..+++...+..+.+.||..+.+--|.. -+.+.+|++++|+..|+..|-+=. | ..|..+-...+++
T Consensus 24 ~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~ 103 (596)
T PRK14042 24 RTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVK 103 (596)
T ss_pred CHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHH
Confidence 456777777888888999988765521 246799999999998877664322 2 2233344445888
Q ss_pred HHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCC----eEEe-CCCCCCHHHHHH----HHHcCCCCEEEeCCCCCc
Q 015289 251 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGV----SVAA-DESCRSLDDVKK----IVKGNLADVINIKLAKVG 321 (409)
Q Consensus 251 ~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~i----pIa~-dEs~~~~~~~~~----~i~~~a~div~~k~~~~G 321 (409)
...+.|+.+..+=+++. |.+.+..-.+..++ .|. -||. .-..+++..+.+ +.+.| +|.+.++=+- |
T Consensus 104 ~a~~~Gidv~Rifd~ln--d~~n~~~~i~~~k~-~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~G-ad~I~IkDta-G 178 (596)
T PRK14042 104 LAVNNGVDVFRVFDALN--DARNLKVAIDAIKS-HKKHAQGAICYTTSPVHTLDNFLELGKKLAEMG-CDSIAIKDMA-G 178 (596)
T ss_pred HHHHcCCCEEEEcccCc--chHHHHHHHHHHHH-cCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcC-CCEEEeCCcc-c
Confidence 88999988777888775 44445443332232 232 2332 333677765533 44455 6888887543 5
Q ss_pred -H--HHHHHHH-HHHHHcCCcEEEccCCchHHHHHHHHHHHc
Q 015289 322 -V--LGALEII-EVVRASGLNLMIGGMVETRLAMGFAGHLSA 359 (409)
Q Consensus 322 -i--~~~~~i~-~~A~~~gi~~~~~~~~es~i~~~~~~hlaa 359 (409)
+ ..+.++. .+-++.++++.+|+....+++ .+..++|
T Consensus 179 ~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla--~an~laA 218 (596)
T PRK14042 179 LLTPTVTVELYAGLKQATGLPVHLHSHSTSGLA--SICHYEA 218 (596)
T ss_pred CCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcH--HHHHHHH
Confidence 3 3444444 334456899999886544444 4444444
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=91.79 E-value=3.8 Score=38.77 Aligned_cols=153 Identities=18% Similarity=0.184 Sum_probs=93.3
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhC--CCcEEEEeCCC------------CCC
Q 015289 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH--PDSSFILDANE------------GYK 241 (409)
Q Consensus 176 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~--~~~~l~vDaN~------------~w~ 241 (409)
+|+....++.+.+++ +++...|... +-+|...-.+.+.++.+.+.+ ..+.+.+|+.. +|.
T Consensus 75 ipv~~~GGi~s~~~~----~~~l~~Ga~~--Viigt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~ 148 (253)
T PRK02083 75 IPLTVGGGIRSVEDA----RRLLRAGADK--VSINSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGR 148 (253)
T ss_pred CCEEeeCCCCCHHHH----HHHHHcCCCE--EEEChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCc
Confidence 344444455566554 3444567555 456654445667888888874 34677888643 132
Q ss_pred ---HHHHHHHHHHHHhCCCCCceeecCC------CCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCE
Q 015289 242 ---PQEAVEVLEKLYEMGVTPVLFEQPV------HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADV 312 (409)
Q Consensus 242 ---~~~A~~~~~~L~~~~l~~~~iEeP~------~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~di 312 (409)
.....++++.+.+.++. ..+=.++ ...|++.++++++ ..++||.+.=-+.+..|+.++++...+|.
T Consensus 149 ~~~~~~~~~~~~~~~~~g~~-~ii~~~i~~~g~~~g~d~~~i~~~~~----~~~ipvia~GGv~s~~d~~~~~~~~G~~g 223 (253)
T PRK02083 149 KPTGLDAVEWAKEVEELGAG-EILLTSMDRDGTKNGYDLELTRAVSD----AVNVPVIASGGAGNLEHFVEAFTEGGADA 223 (253)
T ss_pred eecCCCHHHHHHHHHHcCCC-EEEEcCCcCCCCCCCcCHHHHHHHHh----hCCCCEEEECCCCCHHHHHHHHHhCCccE
Confidence 11345677888887764 2222222 2246777777764 56899999888999999999998634666
Q ss_pred EEeC-CCCCcHHHHHHHHHHHHHcCCcE
Q 015289 313 INIK-LAKVGVLGALEIIEVVRASGLNL 339 (409)
Q Consensus 313 v~~k-~~~~Gi~~~~~i~~~A~~~gi~~ 339 (409)
+.+- .-.-|-....++.+.+++.|+++
T Consensus 224 vivg~al~~~~~~~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 224 ALAASIFHFGEITIGELKAYLAEQGIPV 251 (253)
T ss_pred EeEhHHHHcCCCCHHHHHHHHHHCCCcc
Confidence 6553 22234223345567777888865
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=91.77 E-value=9 Score=34.00 Aligned_cols=130 Identities=11% Similarity=0.097 Sum_probs=84.1
Q ss_pred eeeeeeecCCC----HHHHHHHHHHHHHcCCCeEEEecC----CC--hhHHHHHHHHHHhhC-CCcEEEEeCCCCC--CH
Q 015289 176 ITTDITIPIVS----PAEAAELASKYRKQGFTTLKLKVG----KN--LKEDIEVLRAIRAVH-PDSSFILDANEGY--KP 242 (409)
Q Consensus 176 i~~~~~i~~~~----~~~~~~~~~~~~~~Gf~~~KiKvG----~~--~~~d~~~l~avr~~~-~~~~l~vDaN~~w--~~ 242 (409)
+|+...++..+ .++..+.++.+.+.|...+.+-.. .+ .+.-.+.++++++.. .++.+++..+-.+ +.
T Consensus 49 ~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~ 128 (201)
T cd00945 49 VPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTA 128 (201)
T ss_pred CeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCH
Confidence 45444555544 778888899999999999998643 11 234456677777763 5788888776443 56
Q ss_pred HHHHHHHHHHHhCCCCCceeecCCCC----CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCC
Q 015289 243 QEAVEVLEKLYEMGVTPVLFEQPVHR----DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 309 (409)
Q Consensus 243 ~~A~~~~~~L~~~~l~~~~iEeP~~~----~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a 309 (409)
++..+..+.+++.++. ++-..... .+++.++++.+... .++||...-...++..+..++..|+
T Consensus 129 ~~~~~~~~~~~~~g~~--~iK~~~~~~~~~~~~~~~~~i~~~~~--~~~~v~~~gg~~~~~~~~~~~~~Ga 195 (201)
T cd00945 129 DEIAKAARIAAEAGAD--FIKTSTGFGGGGATVEDVKLMKEAVG--GRVGVKAAGGIKTLEDALAAIEAGA 195 (201)
T ss_pred HHHHHHHHHHHHhCCC--EEEeCCCCCCCCCCHHHHHHHHHhcc--cCCcEEEECCCCCHHHHHHHHHhcc
Confidence 7766677777777764 77665542 26777777764211 1456654334446777888888764
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.75 E-value=4.9 Score=37.72 Aligned_cols=131 Identities=18% Similarity=0.280 Sum_probs=92.2
Q ss_pred HHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhh-CCCcEEEEeCCC------CCCHH---HHHHHHHHHHhCCCCCce
Q 015289 192 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANE------GYKPQ---EAVEVLEKLYEMGVTPVL 261 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~-~~~~~l~vDaN~------~w~~~---~A~~~~~~L~~~~l~~~~ 261 (409)
+.++++++.|..++=+ |.-.-+|-++++.+.+. +..+.+.+|++. +|.-. ++.++++++++.++. .+
T Consensus 88 ~~v~~ll~~G~~rVii--Gt~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~-~i 164 (241)
T COG0106 88 EDVEALLDAGVARVII--GTAAVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLA-HI 164 (241)
T ss_pred HHHHHHHHCCCCEEEE--ecceecCHHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCC-eE
Confidence 4456678889877754 32224677888888887 456788899986 57432 456788888888764 23
Q ss_pred e------ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHc-CCCCEEEeCCCCCc-H--HHHHHHH
Q 015289 262 F------EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG-NLADVINIKLAKVG-V--LGALEII 329 (409)
Q Consensus 262 i------EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~-~a~div~~k~~~~G-i--~~~~~i~ 329 (409)
| |==+.--|++.+++|++ .+.+|+...=-+.+..|++.+-+. |...++.-+.-.-| + .++++..
T Consensus 165 i~TdI~~DGtl~G~n~~l~~~l~~----~~~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~g~~~l~ea~~~~ 238 (241)
T COG0106 165 LYTDISRDGTLSGPNVDLVKELAE----AVDIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYEGKFTLEEALACV 238 (241)
T ss_pred EEEecccccccCCCCHHHHHHHHH----HhCcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhcCCCCHHHHHHHH
Confidence 3 44455567888999886 578999998889999999999888 67677766655555 3 4555443
|
|
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.50 E-value=7.8 Score=38.35 Aligned_cols=150 Identities=24% Similarity=0.272 Sum_probs=100.9
Q ss_pred eeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCC----------------ChhHHHHHHHHHHhh-C-C-CcEEEEeCC
Q 015289 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAV-H-P-DSSFILDAN 237 (409)
Q Consensus 177 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~d~~~l~avr~~-~-~-~~~l~vDaN 237 (409)
|.-..++..+|+.+.+.++-....+ ..|-+..|- +++---+.|++++.. + | .++|++=
T Consensus 75 PLIvQf~~ndp~~ll~Aa~lv~~y~-D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~-- 151 (358)
T KOG2335|consen 75 PLIVQFGGNDPENLLKAARLVQPYC-DGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIF-- 151 (358)
T ss_pred ceEEEEcCCCHHHHHHHHHHhhhhc-CcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEec--
Confidence 5556677889998888776555555 888888872 222334567777775 2 3 2344442
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCcee-------ecC---CCCCCHHHHHHhHHHhhccCC-CeEEeCCCCCCHHHHHHHHH
Q 015289 238 EGYKPQEAVEVLEKLYEMGVTPVLF-------EQP---VHRDDWEGLGHVSHIAKDKFG-VSVAADESCRSLDDVKKIVK 306 (409)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~i-------EeP---~~~~d~~~~~~l~~~~~~~~~-ipIa~dEs~~~~~~~~~~i~ 306 (409)
=+.++.+++++.+++.|.. |+ ||= ..+-||+.++.+++ ... +||.+.=++.++.|..++++
T Consensus 152 --~d~~kTvd~ak~~e~aG~~--~ltVHGRtr~~kg~~~~pad~~~i~~v~~----~~~~ipviaNGnI~~~~d~~~~~~ 223 (358)
T KOG2335|consen 152 --VDLEKTVDYAKMLEDAGVS--LLTVHGRTREQKGLKTGPADWEAIKAVRE----NVPDIPVIANGNILSLEDVERCLK 223 (358)
T ss_pred --CcHHHHHHHHHHHHhCCCc--EEEEecccHHhcCCCCCCcCHHHHHHHHH----hCcCCcEEeeCCcCcHHHHHHHHH
Confidence 4567778888899998875 44 332 45668898998875 344 99999999999999999999
Q ss_pred cCCCCEEEeC------CCC-----Cc--HHH-HHHHHHHHHHcCC
Q 015289 307 GNLADVINIK------LAK-----VG--VLG-ALEIIEVVRASGL 337 (409)
Q Consensus 307 ~~a~div~~k------~~~-----~G--i~~-~~~i~~~A~~~gi 337 (409)
.-.+|.|..- |.. .+ ..+ ..+-..+|++++-
T Consensus 224 ~tG~dGVM~arglL~NPa~F~~~~~~~~~~~~~~~~l~~~~e~~g 268 (358)
T KOG2335|consen 224 YTGADGVMSARGLLYNPALFLTAGYGPTPWGCVEEYLDIAREFGG 268 (358)
T ss_pred HhCCceEEecchhhcCchhhccCCCCCCHHHHHHHHHHHHHHcCC
Confidence 5557887531 111 12 222 3466788888883
|
|
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=91.35 E-value=12 Score=36.26 Aligned_cols=139 Identities=13% Similarity=0.092 Sum_probs=86.6
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHc---CCCeEEEecCC-----------ChhHHHHHHHHHHhhCCCcEEEEeCCCCCC
Q 015289 176 ITTDITIPIVSPAEAAELASKYRKQ---GFTTLKLKVGK-----------NLKEDIEVLRAIRAVHPDSSFILDANEGYK 241 (409)
Q Consensus 176 i~~~~~i~~~~~~~~~~~~~~~~~~---Gf~~~KiKvG~-----------~~~~d~~~l~avr~~~~~~~l~vDaN~~w~ 241 (409)
.|+..++... ++++.+.+++..+. |...|-+.++- +++.-.+.++++|+.. ++.+.+=-.-.|+
T Consensus 92 ~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~-~iPv~vKl~p~~~ 169 (294)
T cd04741 92 KPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAY-SIPVGVKTPPYTD 169 (294)
T ss_pred CeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhc-CCCEEEEeCCCCC
Confidence 4556666665 88888877777654 68899998871 3444455667777753 3445555555567
Q ss_pred HHHHHHHHHHHHhC--CCCC------------cee--ecCCC--CC----------CHHHHHHhHHHhhccC--CCeEEe
Q 015289 242 PQEAVEVLEKLYEM--GVTP------------VLF--EQPVH--RD----------DWEGLGHVSHIAKDKF--GVSVAA 291 (409)
Q Consensus 242 ~~~A~~~~~~L~~~--~l~~------------~~i--EeP~~--~~----------d~~~~~~l~~~~~~~~--~ipIa~ 291 (409)
.++..++++.+.+. ++.- .-+ +.|.- .. .+..++.+++ ++++. ++||.+
T Consensus 170 ~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~-~~~~~~~~ipIig 248 (294)
T cd04741 170 PAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRT-FRRLLPSEIQIIG 248 (294)
T ss_pred HHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHH-HHHhcCCCCCEEE
Confidence 66666777777766 2210 001 22211 11 2233444433 23345 499999
Q ss_pred CCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 015289 292 DESCRSLDDVKKIVKGNLADVINIKLA 318 (409)
Q Consensus 292 dEs~~~~~~~~~~i~~~a~div~~k~~ 318 (409)
-=-+.+.+|+.+++..| +|.||+=-+
T Consensus 249 ~GGI~s~~da~e~l~aG-A~~Vqv~ta 274 (294)
T cd04741 249 VGGVLDGRGAFRMRLAG-ASAVQVGTA 274 (294)
T ss_pred eCCCCCHHHHHHHHHcC-CCceeEchh
Confidence 88999999999999977 599988544
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=91.28 E-value=1.5 Score=39.92 Aligned_cols=99 Identities=20% Similarity=0.258 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCceeecCCCCCC-HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 015289 240 YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (409)
Q Consensus 240 w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~ 318 (409)
-+.+++.+.++.|-+-|+. .+|=.+...+ .+.++++++. .-++-|.+| ++.+.++++++++.|+ +++.- |.
T Consensus 17 ~~~~~a~~~~~al~~gGi~--~iEiT~~t~~a~~~I~~l~~~---~p~~~vGAG-TV~~~e~a~~a~~aGA-~FivS-P~ 88 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIR--AIEITLRTPNALEAIEALRKE---FPDLLVGAG-TVLTAEQAEAAIAAGA-QFIVS-PG 88 (196)
T ss_dssp SSGGGHHHHHHHHHHTT----EEEEETTSTTHHHHHHHHHHH---HTTSEEEEE-S--SHHHHHHHHHHT--SEEEE-SS
T ss_pred CCHHHHHHHHHHHHHCCCC--EEEEecCCccHHHHHHHHHHH---CCCCeeEEE-eccCHHHHHHHHHcCC-CEEEC-CC
Confidence 4678899999999999986 8999998655 3334445442 334555554 7899999999999995 66532 11
Q ss_pred CCcHHHHHHHHHHHHHcCCcEEEccCCchHHHH
Q 015289 319 KVGVLGALEIIEVVRASGLNLMIGGMVETRLAM 351 (409)
Q Consensus 319 ~~Gi~~~~~i~~~A~~~gi~~~~~~~~es~i~~ 351 (409)
. .-++++.|+++|++++||++.-|.+-.
T Consensus 89 ~-----~~~v~~~~~~~~i~~iPG~~TptEi~~ 116 (196)
T PF01081_consen 89 F-----DPEVIEYAREYGIPYIPGVMTPTEIMQ 116 (196)
T ss_dssp -------HHHHHHHHHHTSEEEEEESSHHHHHH
T ss_pred C-----CHHHHHHHHHcCCcccCCcCCHHHHHH
Confidence 1 257789999999999999997666543
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=91.24 E-value=8.5 Score=37.93 Aligned_cols=158 Identities=16% Similarity=0.227 Sum_probs=95.4
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCC---Ch--------hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHH
Q 015289 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK---NL--------KEDIEVLRAIRAVHPDSSFILDANEGYKPQE 244 (409)
Q Consensus 176 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~---~~--------~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~ 244 (409)
.|+..++...++++..+.++.+.+.|+..+-+.++. +. +.-.+.++++|+.. ++.+.+=-...++ +
T Consensus 100 ~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~-~iPv~vKl~p~~~--~ 176 (325)
T cd04739 100 IPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV-TIPVAVKLSPFFS--A 176 (325)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc-CCCEEEEcCCCcc--C
Confidence 455666666778888888888877899999999862 11 11246677887753 3455555443333 4
Q ss_pred HHHHHHHHHhCCCCCc-----eeecCCCCC------C---------HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHH
Q 015289 245 AVEVLEKLYEMGVTPV-----LFEQPVHRD------D---------WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 304 (409)
Q Consensus 245 A~~~~~~L~~~~l~~~-----~iEeP~~~~------d---------~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~ 304 (409)
..++++.+++.++.-. +..-+...+ . ...++.+++ +++..++||.+.=-+.+.+|+.++
T Consensus 177 ~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~-v~~~~~ipIig~GGI~s~~Da~e~ 255 (325)
T cd04739 177 LAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAI-LSGRVKASLAASGGVHDAEDVVKY 255 (325)
T ss_pred HHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHH-HHcccCCCEEEECCCCCHHHHHHH
Confidence 5567777777654211 111111000 0 011222322 234568999998899999999999
Q ss_pred HHcCCCCEEEeCCCCC--c---HHHH-HHHHHHHHHcCCc
Q 015289 305 VKGNLADVINIKLAKV--G---VLGA-LEIIEVVRASGLN 338 (409)
Q Consensus 305 i~~~a~div~~k~~~~--G---i~~~-~~i~~~A~~~gi~ 338 (409)
+..| +|.||+=-+-. | +... ..+.++.+++|++
T Consensus 256 l~aG-A~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g~~ 294 (325)
T cd04739 256 LLAG-ADVVMTTSALLRHGPDYIGTLLAGLEAWMEEHGYE 294 (325)
T ss_pred HHcC-CCeeEEehhhhhcCchHHHHHHHHHHHHHHHcCCC
Confidence 9876 59998864321 4 2222 3456777777765
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=91.18 E-value=23 Score=37.97 Aligned_cols=168 Identities=19% Similarity=0.261 Sum_probs=102.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCC--C------hhHHHHHHHHHHhhCCCcEEEEeCCC----CCC--HHHH-HHHH
Q 015289 185 VSPAEAAELASKYRKQGFTTLKLKVGK--N------LKEDIEVLRAIRAVHPDSSFILDANE----GYK--PQEA-VEVL 249 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~--~------~~~d~~~l~avr~~~~~~~l~vDaN~----~w~--~~~A-~~~~ 249 (409)
.+.+++...+..+.+.||..+-+--|. + -+.+.++++++|+..|+..|..=+.+ +|+ ++++ ..++
T Consensus 24 ~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v 103 (593)
T PRK14040 24 LRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFV 103 (593)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHH
Confidence 366788888888888899999884331 1 14679999999999888776433342 454 3444 4578
Q ss_pred HHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCe----EEe-CCCCCCHHHH----HHHHHcCCCCEEEeCCCCC
Q 015289 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS----VAA-DESCRSLDDV----KKIVKGNLADVINIKLAKV 320 (409)
Q Consensus 250 ~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ip----Ia~-dEs~~~~~~~----~~~i~~~a~div~~k~~~~ 320 (409)
+...+.++....|-+++. |++.+....+.++ +.+.- |+. +...++...+ +.+.+.| +|.+.++=+-
T Consensus 104 ~~a~~~Gid~~rifd~ln--d~~~~~~ai~~ak-~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~G-ad~i~i~Dt~- 178 (593)
T PRK14040 104 ERAVKNGMDVFRVFDAMN--DPRNLETALKAVR-KVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMG-VDSLCIKDMA- 178 (593)
T ss_pred HHHHhcCCCEEEEeeeCC--cHHHHHHHHHHHH-HcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcC-CCEEEECCCC-
Confidence 888888887667777776 4554544333333 23443 442 2334444433 3344455 6888887554
Q ss_pred c---HHHHHHHH-HHHHHcCCcEEEccCCchHHHHHHHHHHHc
Q 015289 321 G---VLGALEII-EVVRASGLNLMIGGMVETRLAMGFAGHLSA 359 (409)
Q Consensus 321 G---i~~~~~i~-~~A~~~gi~~~~~~~~es~i~~~~~~hlaa 359 (409)
| ..++.+++ .+-++.++++.+|+...++++ .+..++|
T Consensus 179 G~l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA--~An~laA 219 (593)
T PRK14040 179 GLLKPYAAYELVSRIKKRVDVPLHLHCHATTGLS--TATLLKA 219 (593)
T ss_pred CCcCHHHHHHHHHHHHHhcCCeEEEEECCCCchH--HHHHHHH
Confidence 4 33455544 444556899999886555544 4444444
|
|
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=91.04 E-value=5.8 Score=36.77 Aligned_cols=126 Identities=16% Similarity=0.209 Sum_probs=78.7
Q ss_pred eeecCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhC-CCcEEEEeCC------CCCC---HHHHHHHH
Q 015289 180 ITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-PDSSFILDAN------EGYK---PQEAVEVL 249 (409)
Q Consensus 180 ~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~-~~~~l~vDaN------~~w~---~~~A~~~~ 249 (409)
...++.+.+++ +++.+.|.. ++=+|...-.+.+.++.+.+.+ ..+.+.+|.. .+|. .....+++
T Consensus 79 ~~GGI~~~ed~----~~~~~~Ga~--~vilg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~ 152 (233)
T PRK00748 79 VGGGIRSLETV----EALLDAGVS--RVIIGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLA 152 (233)
T ss_pred EcCCcCCHHHH----HHHHHcCCC--EEEECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHH
Confidence 33345555554 445556765 3456754445555666665654 3477888874 2341 22335677
Q ss_pred HHHHhCCCC-Ccee----ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 250 EKLYEMGVT-PVLF----EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 250 ~~L~~~~l~-~~~i----EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
+.+++.+.. +... ++....-|++.++++++ .+++||...=-+.+..|++++.+.+.+|.+.+
T Consensus 153 ~~~~~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~----~~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 153 KRFEDAGVKAIIYTDISRDGTLSGPNVEATRELAA----AVPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHhcCCCEEEEeeecCcCCcCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 778776653 1111 23333346787888764 56799999888999999999999887787754
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=91.03 E-value=5 Score=37.48 Aligned_cols=122 Identities=21% Similarity=0.343 Sum_probs=77.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhh-CC-CcEEEEeCC------CCCCHH---HHHHHHHH
Q 015289 183 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HP-DSSFILDAN------EGYKPQ---EAVEVLEK 251 (409)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~-~~-~~~l~vDaN------~~w~~~---~A~~~~~~ 251 (409)
++.+.+++ +.+.+.|... +-+|...-.|.+.+..+++. +. .+.+.+|+. .+|..+ ...++++.
T Consensus 84 Gi~~~~~~----~~~~~~Ga~~--v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~ 157 (241)
T PRK13585 84 GIRSAEDA----ASLLDLGVDR--VILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKR 157 (241)
T ss_pred CcCCHHHH----HHHHHcCCCE--EEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHH
Confidence 34455443 4455677764 56675444566778888887 43 345678875 345321 33567777
Q ss_pred HHhCCCCCcee-----ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 252 LYEMGVTPVLF-----EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 252 L~~~~l~~~~i-----EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
+++.++....+ +.....-+++.++++++ ...+||.+.=.+.+++++.++.+.| ++.+.+
T Consensus 158 ~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~----~~~iPvia~GGI~~~~di~~~~~~G-a~gv~v 221 (241)
T PRK13585 158 FEELGAGSILFTNVDVEGLLEGVNTEPVKELVD----SVDIPVIASGGVTTLDDLRALKEAG-AAGVVV 221 (241)
T ss_pred HHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcC-CCEEEE
Confidence 77777642222 22223346777777764 5689999999999999999987776 566654
|
|
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=90.90 E-value=13 Score=34.31 Aligned_cols=141 Identities=12% Similarity=0.202 Sum_probs=99.0
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCc-EEEEeCCCCCCHHHHHHHHHHHHhCCCCCce
Q 015289 183 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDS-SFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261 (409)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~-~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~ 261 (409)
-..+.++..+.++.+.+-|++.+.+-+.. ..-.+.++++++.+++. ++.+=+..-.|.+|+.+. .+.|.. |
T Consensus 20 r~~~~~~a~~~~~al~~~Gi~~iEit~~~--~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a----~~aGA~--F 91 (213)
T PRK06552 20 RGESKEEALKISLAVIKGGIKAIEVTYTN--PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLA----ILAGAQ--F 91 (213)
T ss_pred ECCCHHHHHHHHHHHHHCCCCEEEEECCC--ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHH----HHcCCC--E
Confidence 34578888999999999999999998853 34667888888876542 688999999999987544 346654 7
Q ss_pred eecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-CcHHHHHHHHHHHHHcC-CcE
Q 015289 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALEIIEVVRASG-LNL 339 (409)
Q Consensus 262 iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~-~Gi~~~~~i~~~A~~~g-i~~ 339 (409)
+=-|.-..+. .+.++ +.++|+.- -+.++.++.+..+.| +|++.+=|.. .|..... .+..-+. +++
T Consensus 92 ivsP~~~~~v---~~~~~----~~~i~~iP--G~~T~~E~~~A~~~G-ad~vklFPa~~~G~~~ik---~l~~~~p~ip~ 158 (213)
T PRK06552 92 IVSPSFNRET---AKICN----LYQIPYLP--GCMTVTEIVTALEAG-SEIVKLFPGSTLGPSFIK---AIKGPLPQVNV 158 (213)
T ss_pred EECCCCCHHH---HHHHH----HcCCCEEC--CcCCHHHHHHHHHcC-CCEEEECCcccCCHHHHH---HHhhhCCCCEE
Confidence 7778764433 33332 46889887 477899999999877 5999986644 3533322 2233344 888
Q ss_pred EEccC
Q 015289 340 MIGGM 344 (409)
Q Consensus 340 ~~~~~ 344 (409)
++.+-
T Consensus 159 ~atGG 163 (213)
T PRK06552 159 MVTGG 163 (213)
T ss_pred EEECC
Confidence 87553
|
|
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=90.79 E-value=20 Score=37.22 Aligned_cols=168 Identities=20% Similarity=0.251 Sum_probs=101.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCCh--------hHHHHHHHHHHhhCCCcEEE---EeCC-CCCCH---HHHHHHHH
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGKNL--------KEDIEVLRAIRAVHPDSSFI---LDAN-EGYKP---QEAVEVLE 250 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~--------~~d~~~l~avr~~~~~~~l~---vDaN-~~w~~---~~A~~~~~ 250 (409)
+.+++...+..+.+.||..+.+--|... +.+.++++++|+..|+..|. .=.| =+|.. +-...|++
T Consensus 33 ~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~ 112 (468)
T PRK12581 33 SIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFIS 112 (468)
T ss_pred CHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHH
Confidence 5678888888888889999987655222 46899999999987776543 2223 23442 43455788
Q ss_pred HHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCe----EE-eCCCCCCHHH----HHHHHHcCCCCEEEeCCCCCc
Q 015289 251 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS----VA-ADESCRSLDD----VKKIVKGNLADVINIKLAKVG 321 (409)
Q Consensus 251 ~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ip----Ia-~dEs~~~~~~----~~~~i~~~a~div~~k~~~~G 321 (409)
...+.|+.+..+=+.+. |.+.++...+.+++ .|.- |+ .+...++..- ++++.+.| +|.+.++=+- |
T Consensus 113 ~a~~~Gidi~Rifd~ln--d~~n~~~ai~~ak~-~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~G-ad~I~IkDta-G 187 (468)
T PRK12581 113 LSAQNGIDVFRIFDALN--DPRNIQQALRAVKK-TGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMG-ADSICIKDMA-G 187 (468)
T ss_pred HHHHCCCCEEEEcccCC--CHHHHHHHHHHHHH-cCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcC-CCEEEECCCC-C
Confidence 88899988777778776 55656554443332 2322 22 2223343332 34455566 6888877553 5
Q ss_pred ---HHHHHHHHHHHH-HcCCcEEEccCCchHHHHHHHHHHHcc
Q 015289 322 ---VLGALEIIEVVR-ASGLNLMIGGMVETRLAMGFAGHLSAG 360 (409)
Q Consensus 322 ---i~~~~~i~~~A~-~~gi~~~~~~~~es~i~~~~~~hlaaa 360 (409)
...+.++....+ ..++++.+|+....++ +.+..++|.
T Consensus 188 ~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~Gl--A~An~laAi 228 (468)
T PRK12581 188 ILTPKAAKELVSGIKAMTNLPLIVHTHATSGI--SQMTYLAAV 228 (468)
T ss_pred CcCHHHHHHHHHHHHhccCCeEEEEeCCCCcc--HHHHHHHHH
Confidence 334555544434 4568888888644444 444444443
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=90.71 E-value=5.9 Score=37.23 Aligned_cols=117 Identities=21% Similarity=0.240 Sum_probs=77.5
Q ss_pred HHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhC-CCcEEEEeCC------CCCC--HHHHHHHHHHHHhCCCCCcee
Q 015289 192 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-PDSSFILDAN------EGYK--PQEAVEVLEKLYEMGVTPVLF 262 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~-~~~~l~vDaN------~~w~--~~~A~~~~~~L~~~~l~~~~i 262 (409)
+.++++...|.. |+-+|...-+|.+.++.+-+.+ ..+.+.+|.. .+|+ ..+..++++.+++.++. ..+
T Consensus 88 edv~~~l~~Ga~--kvviGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~-~ii 164 (241)
T PRK14024 88 ESLEAALATGCA--RVNIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCS-RYV 164 (241)
T ss_pred HHHHHHHHCCCC--EEEECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCC-EEE
Confidence 345566777876 4566654445666666666553 4455667763 2464 23457788889988864 122
Q ss_pred ------ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHc--CCCCEEEe
Q 015289 263 ------EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG--NLADVINI 315 (409)
Q Consensus 263 ------EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~--~a~div~~ 315 (409)
++-....|++.++++.+ ..++||.+.=-+.+..|+.++.+. ..+|.+.+
T Consensus 165 v~~~~~~g~~~G~d~~~i~~i~~----~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~i 221 (241)
T PRK14024 165 VTDVTKDGTLTGPNLELLREVCA----RTDAPVVASGGVSSLDDLRALAELVPLGVEGAIV 221 (241)
T ss_pred EEeecCCCCccCCCHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEE
Confidence 55555557888888864 578999998889999999988643 24676654
|
|
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=90.62 E-value=17 Score=37.48 Aligned_cols=169 Identities=21% Similarity=0.287 Sum_probs=97.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCCh--------hHHHHHHHHHHhhCCCcEEE--EeC-C-CCCC--HHH-HHHHH
Q 015289 185 VSPAEAAELASKYRKQGFTTLKLKVGKNL--------KEDIEVLRAIRAVHPDSSFI--LDA-N-EGYK--PQE-AVEVL 249 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~--------~~d~~~l~avr~~~~~~~l~--vDa-N-~~w~--~~~-A~~~~ 249 (409)
.+.++..+.+..+.+.||..+-+--|... +.+.++++.+++..++..+. +=+ | -+|. +++ ..+++
T Consensus 23 ~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v 102 (448)
T PRK12331 23 MTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFV 102 (448)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHH
Confidence 35677888888888899999998533211 24788999999987877764 222 2 2453 233 34577
Q ss_pred HHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCe----EE-eCCCCCCHHHH----HHHHHcCCCCEEEeCCCC-
Q 015289 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS----VA-ADESCRSLDDV----KKIVKGNLADVINIKLAK- 319 (409)
Q Consensus 250 ~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ip----Ia-~dEs~~~~~~~----~~~i~~~a~div~~k~~~- 319 (409)
++..+.++...-+-.++. |...+.+..+.++ +.+.. |+ .+...++...+ +++.+.| +|.+.++=+-
T Consensus 103 ~~A~~~Gvd~irif~~ln--d~~n~~~~v~~ak-~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~G-ad~I~i~Dt~G 178 (448)
T PRK12331 103 QKSVENGIDIIRIFDALN--DVRNLETAVKATK-KAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMG-ADSICIKDMAG 178 (448)
T ss_pred HHHHHCCCCEEEEEEecC--cHHHHHHHHHHHH-HcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcC-CCEEEEcCCCC
Confidence 887888876455566665 3444444333333 23433 22 22234444433 4455566 6887776443
Q ss_pred Cc-HHHHHHHHH-HHHHcCCcEEEccCCchHHHHHHHHHHHc
Q 015289 320 VG-VLGALEIIE-VVRASGLNLMIGGMVETRLAMGFAGHLSA 359 (409)
Q Consensus 320 ~G-i~~~~~i~~-~A~~~gi~~~~~~~~es~i~~~~~~hlaa 359 (409)
+. ...+.+++. +-++.++++.+|+....+++ .+-.++|
T Consensus 179 ~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA--~AN~laA 218 (448)
T PRK12331 179 ILTPYVAYELVKRIKEAVTVPLEVHTHATSGIA--EMTYLKA 218 (448)
T ss_pred CCCHHHHHHHHHHHHHhcCCeEEEEecCCCCcH--HHHHHHH
Confidence 22 344555544 44456899998886544444 3434444
|
|
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=90.57 E-value=14 Score=33.97 Aligned_cols=139 Identities=15% Similarity=0.241 Sum_probs=93.3
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCcee
Q 015289 183 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 262 (409)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i 262 (409)
-..++++..+.++.+.+-|++.+.+..-. ....+.++.+++.+++ .+.+=+..-.+.+++... .+.|.+ |+
T Consensus 17 r~~~~~~~~~~~~a~~~gGi~~iEvt~~~--~~~~~~i~~l~~~~~~-~~~iGaGTV~~~~~~~~a----~~aGA~--fi 87 (206)
T PRK09140 17 RGITPDEALAHVGALIEAGFRAIEIPLNS--PDPFDSIAALVKALGD-RALIGAGTVLSPEQVDRL----ADAGGR--LI 87 (206)
T ss_pred eCCCHHHHHHHHHHHHHCCCCEEEEeCCC--ccHHHHHHHHHHHcCC-CcEEeEEecCCHHHHHHH----HHcCCC--EE
Confidence 34578888999999999999999998643 2455678888887653 367778888888876443 335543 66
Q ss_pred ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-CcHHHHHHHHHHHHHc--CCcE
Q 015289 263 EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALEIIEVVRAS--GLNL 339 (409)
Q Consensus 263 EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~-~Gi~~~~~i~~~A~~~--gi~~ 339 (409)
=-|.. |.+-.+. + +..++++..| +.++.++.+..+.| +|++.+=++. +|+.... .+.+.. .+++
T Consensus 88 vsp~~--~~~v~~~-~----~~~~~~~~~G--~~t~~E~~~A~~~G-ad~vk~Fpa~~~G~~~l~---~l~~~~~~~ipv 154 (206)
T PRK09140 88 VTPNT--DPEVIRR-A----VALGMVVMPG--VATPTEAFAALRAG-AQALKLFPASQLGPAGIK---ALRAVLPPDVPV 154 (206)
T ss_pred ECCCC--CHHHHHH-H----HHCCCcEEcc--cCCHHHHHHHHHcC-CCEEEECCCCCCCHHHHH---HHHhhcCCCCeE
Confidence 66654 3322222 2 2468888887 99999999999887 5999874432 4533322 333344 5888
Q ss_pred EEcc
Q 015289 340 MIGG 343 (409)
Q Consensus 340 ~~~~ 343 (409)
+.-+
T Consensus 155 vaiG 158 (206)
T PRK09140 155 FAVG 158 (206)
T ss_pred EEEC
Confidence 7644
|
|
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=90.49 E-value=11 Score=37.21 Aligned_cols=134 Identities=17% Similarity=0.230 Sum_probs=86.0
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCC----------Ch-hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHH
Q 015289 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------NL-KEDIEVLRAIRAVHPDSSFILDANEGYKPQE 244 (409)
Q Consensus 176 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------~~-~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~ 244 (409)
+|+..++...++++..+.++.+.+.|+..+-+.++. +. +.-.+.++++|+.. ++.+.+=-+..++ +
T Consensus 102 ~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~-~iPV~vKl~p~~~--~ 178 (334)
T PRK07565 102 IPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV-SIPVAVKLSPYFS--N 178 (334)
T ss_pred CcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc-CCcEEEEeCCCch--h
Confidence 456667767788888888888888899999997651 11 12345667777753 4566666544443 4
Q ss_pred HHHHHHHHHhCCCCCceeec--CCC--CCCH------------------HHHHHhHHHhhccCCCeEEeCCCCCCHHHHH
Q 015289 245 AVEVLEKLYEMGVTPVLFEQ--PVH--RDDW------------------EGLGHVSHIAKDKFGVSVAADESCRSLDDVK 302 (409)
Q Consensus 245 A~~~~~~L~~~~l~~~~iEe--P~~--~~d~------------------~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~ 302 (409)
..++++.+++.++. .|-- -+. .-|+ ..++.+++ +++..++||.+.=-+.+..|+.
T Consensus 179 ~~~~a~~l~~~G~d--gI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~-~~~~~~ipIig~GGI~s~~Da~ 255 (334)
T PRK07565 179 LANMAKRLDAAGAD--GLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAI-LSGRVGADLAATTGVHDAEDVI 255 (334)
T ss_pred HHHHHHHHHHcCCC--eEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHH-HHhhcCCCEEEECCCCCHHHHH
Confidence 45678888887754 3311 000 0111 11222322 2345689999988999999999
Q ss_pred HHHHcCCCCEEEeC
Q 015289 303 KIVKGNLADVINIK 316 (409)
Q Consensus 303 ~~i~~~a~div~~k 316 (409)
+++..| +|.||+=
T Consensus 256 e~l~aG-A~~V~v~ 268 (334)
T PRK07565 256 KMLLAG-ADVVMIA 268 (334)
T ss_pred HHHHcC-CCceeee
Confidence 999987 6999875
|
|
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.48 E-value=7.5 Score=37.75 Aligned_cols=131 Identities=15% Similarity=0.131 Sum_probs=87.4
Q ss_pred eeeeee--ecCCCHHHHHHHHHHHHHcCCCeEEEe--c-----C-------CChhHHHHHHHHHHhh--CCCcEE--EEe
Q 015289 176 ITTDIT--IPIVSPAEAAELASKYRKQGFTTLKLK--V-----G-------KNLKEDIEVLRAIRAV--HPDSSF--ILD 235 (409)
Q Consensus 176 i~~~~~--i~~~~~~~~~~~~~~~~~~Gf~~~KiK--v-----G-------~~~~~d~~~l~avr~~--~~~~~l--~vD 235 (409)
+|+.+. -|..++.++...++++.+.|-..+-|. + | .+.++=+++|++++++ ++++-| |.|
T Consensus 79 iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTD 158 (292)
T PRK11320 79 LPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTD 158 (292)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecC
Confidence 454433 345588888888999999999888762 2 2 2455667889988886 455544 568
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCC--H-HHHHHHHHcCCCCE
Q 015289 236 ANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRS--L-DDVKKIVKGNLADV 312 (409)
Q Consensus 236 aN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~--~-~~~~~~i~~~a~di 312 (409)
+-.....++|++.++...+.|-...|+|-|- +.+.++++.+ +.+.|+...-...+ + ..+.++-+.| +..
T Consensus 159 a~~~~g~deAI~Ra~aY~eAGAD~ifi~~~~---~~~~i~~~~~----~~~~Pl~~n~~~~~~~p~~s~~~L~~lG-v~~ 230 (292)
T PRK11320 159 ALAVEGLDAAIERAQAYVEAGADMIFPEAMT---ELEMYRRFAD----AVKVPILANITEFGATPLFTTEELASAG-VAM 230 (292)
T ss_pred cccccCHHHHHHHHHHHHHcCCCEEEecCCC---CHHHHHHHHH----hcCCCEEEEeccCCCCCCCCHHHHHHcC-CcE
Confidence 8766779999999999999987777998765 4566677764 46778855332211 1 1344555555 455
Q ss_pred EE
Q 015289 313 IN 314 (409)
Q Consensus 313 v~ 314 (409)
+.
T Consensus 231 v~ 232 (292)
T PRK11320 231 VL 232 (292)
T ss_pred EE
Confidence 43
|
|
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=90.33 E-value=7.2 Score=37.74 Aligned_cols=109 Identities=15% Similarity=0.140 Sum_probs=78.2
Q ss_pred eeeeee--ecCCCHHHHHHHHHHHHHcCCCeEEEe-------cC-------CChhHHHHHHHHHHhh--CCCcEE--EEe
Q 015289 176 ITTDIT--IPIVSPAEAAELASKYRKQGFTTLKLK-------VG-------KNLKEDIEVLRAIRAV--HPDSSF--ILD 235 (409)
Q Consensus 176 i~~~~~--i~~~~~~~~~~~~~~~~~~Gf~~~KiK-------vG-------~~~~~d~~~l~avr~~--~~~~~l--~vD 235 (409)
+|+... -|..++.++...++++.+.|-..+-|. .| .+.++=+++|++++++ .+++-| |.|
T Consensus 74 iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTD 153 (285)
T TIGR02317 74 LPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTD 153 (285)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcC
Confidence 444333 355678888888899999998888762 23 1456667889999886 345433 578
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEe
Q 015289 236 ANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 291 (409)
Q Consensus 236 aN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~ 291 (409)
+-.....++|++.++...+.|-...|+|-|.. .+.++++.+ +++.|+..
T Consensus 154 a~~~~g~deAI~Ra~ay~~AGAD~vfi~g~~~---~e~i~~~~~----~i~~Pl~~ 202 (285)
T TIGR02317 154 ARAVEGLDAAIERAKAYVEAGADMIFPEALTS---LEEFRQFAK----AVKVPLLA 202 (285)
T ss_pred cccccCHHHHHHHHHHHHHcCCCEEEeCCCCC---HHHHHHHHH----hcCCCEEE
Confidence 88777899999999999998877679987654 455666664 45678854
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=90.17 E-value=4.7 Score=39.94 Aligned_cols=102 Identities=17% Similarity=0.149 Sum_probs=70.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCceeec--------------CCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHH
Q 015289 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQ--------------PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 303 (409)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iEe--------------P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~ 303 (409)
..|+.++.+++++.|.+.|+. .||= +....+++.++++.+..+ +..+-+.+.=...+..+++.
T Consensus 19 ~~f~~~~~~~ia~~Ld~aGV~--~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~-~~~~~~ll~pg~~~~~dl~~ 95 (333)
T TIGR03217 19 HQFTIEQVRAIAAALDEAGVD--AIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVK-RAKVAVLLLPGIGTVHDLKA 95 (333)
T ss_pred CcCCHHHHHHHHHHHHHcCCC--EEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCC-CCEEEEEeccCccCHHHHHH
Confidence 346899999999999999985 8998 444567777777765322 22222223222457788988
Q ss_pred HHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccC
Q 015289 304 IVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 304 ~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~ 344 (409)
+.+.+ +|.+++-.. +. ...+.+.+++|++.|..+...-|
T Consensus 96 a~~~g-vd~iri~~~-~~e~d~~~~~i~~ak~~G~~v~~~l~ 135 (333)
T TIGR03217 96 AYDAG-ARTVRVATH-CTEADVSEQHIGMARELGMDTVGFLM 135 (333)
T ss_pred HHHCC-CCEEEEEec-cchHHHHHHHHHHHHHcCCeEEEEEE
Confidence 88876 688876432 33 55678899999999999865433
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=90.13 E-value=12 Score=36.94 Aligned_cols=116 Identities=15% Similarity=0.302 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHcCC--CeEEEecC-CChhHHHHHHHHHHhhCCCcEEEE-eCCCCCCHHHHHHHHHHHHhCCCCCc----
Q 015289 189 EAAELASKYRKQGF--TTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFIL-DANEGYKPQEAVEVLEKLYEMGVTPV---- 260 (409)
Q Consensus 189 ~~~~~~~~~~~~Gf--~~~KiKvG-~~~~~d~~~l~avr~~~~~~~l~v-DaN~~w~~~~A~~~~~~L~~~~l~~~---- 260 (409)
+..+++.++++.|. ..+-+.+- ...+.-.+.++.+|+..|+..+++ |.. |.++|... .+.|+...
T Consensus 97 ~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~---t~e~a~~l----~~aGad~i~vg~ 169 (326)
T PRK05458 97 DEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVG---TPEAVREL----ENAGADATKVGI 169 (326)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecC---CHHHHHHH----HHcCcCEEEECC
Confidence 44577888888866 88888765 334556667999999999988887 665 77766444 44554311
Q ss_pred -----eeecCCC---CCCH--HHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 261 -----LFEQPVH---RDDW--EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 261 -----~iEeP~~---~~d~--~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k 316 (409)
.+|++.. ..|| ..++++++ ...+||.+|-.+.+..|+.+++..| +|.+.+-
T Consensus 170 ~~G~~~~t~~~~g~~~~~w~l~ai~~~~~----~~~ipVIAdGGI~~~~Di~KaLa~G-A~aV~vG 230 (326)
T PRK05458 170 GPGKVCITKIKTGFGTGGWQLAALRWCAK----AARKPIIADGGIRTHGDIAKSIRFG-ATMVMIG 230 (326)
T ss_pred CCCcccccccccCCCCCccHHHHHHHHHH----HcCCCEEEeCCCCCHHHHHHHHHhC-CCEEEec
Confidence 1365432 2333 34555553 3579999999999999999999997 4887664
|
|
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=90.09 E-value=3 Score=41.48 Aligned_cols=125 Identities=10% Similarity=0.120 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecC----------CChhHHHHHHHHHHhhCC----CcEEEEeCCCCCCHHHHHHHHHH
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVG----------KNLKEDIEVLRAIRAVHP----DSSFILDANEGYKPQEAVEVLEK 251 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG----------~~~~~d~~~l~avr~~~~----~~~l~vDaN~~w~~~~A~~~~~~ 251 (409)
+.++.++.++++. .+...+-+.++ .+.+.-.+.+++||+... ++.+.+=-+-.++.++..++++.
T Consensus 155 ~~~d~~~~~~~~~-~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~ 233 (344)
T PRK05286 155 AVDDYLICLEKLY-PYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADL 233 (344)
T ss_pred CHHHHHHHHHHHH-hhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHH
Confidence 4677777777653 36788888775 133445567888998743 47777777766888888899999
Q ss_pred HHhCCCCCc-----e-----eecCC--------C-----CCCHHHHHHhHHHhhccC--CCeEEeCCCCCCHHHHHHHHH
Q 015289 252 LYEMGVTPV-----L-----FEQPV--------H-----RDDWEGLGHVSHIAKDKF--GVSVAADESCRSLDDVKKIVK 306 (409)
Q Consensus 252 L~~~~l~~~-----~-----iEeP~--------~-----~~d~~~~~~l~~~~~~~~--~ipIa~dEs~~~~~~~~~~i~ 306 (409)
+++.++.-. + ++.+. + +-.++..++++ +.. ++||.+-=-+.+.+|+.+++.
T Consensus 234 l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~----~~~~~~ipIig~GGI~s~eda~e~l~ 309 (344)
T PRK05286 234 ALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLY----KELGGRLPIIGVGGIDSAEDAYEKIR 309 (344)
T ss_pred HHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHH----HHhCCCCCEEEECCCCCHHHHHHHHH
Confidence 998765311 1 11110 0 00122233333 344 689998888999999999998
Q ss_pred cCCCCEEEeC
Q 015289 307 GNLADVINIK 316 (409)
Q Consensus 307 ~~a~div~~k 316 (409)
.| +|.||+=
T Consensus 310 aG-Ad~V~v~ 318 (344)
T PRK05286 310 AG-ASLVQIY 318 (344)
T ss_pred cC-CCHHHHH
Confidence 77 6887653
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=90.02 E-value=6.1 Score=36.71 Aligned_cols=123 Identities=18% Similarity=0.212 Sum_probs=76.1
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhC-CC-cEEEEeCCCC------------CC---HHHH
Q 015289 183 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-PD-SSFILDANEG------------YK---PQEA 245 (409)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~-~~-~~l~vDaN~~------------w~---~~~A 245 (409)
+..+.+++ +++.+.|+..+ -+|...-.+.+.++.+.+.+ .+ +.+.+|.... |+ ..++
T Consensus 82 gi~~~~d~----~~~~~~G~~~v--ilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~ 155 (232)
T TIGR03572 82 GIRSLEDA----KKLLSLGADKV--SINTAALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDP 155 (232)
T ss_pred CCCCHHHH----HHHHHcCCCEE--EEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCH
Confidence 44455544 33455687654 55644445667777777764 33 5667886542 32 3345
Q ss_pred HHHHHHHHhCCCCCcee-----ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 246 VEVLEKLYEMGVTPVLF-----EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 246 ~~~~~~L~~~~l~~~~i-----EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
.++++.+++.++...-+ +.-....+++.++++++ ..++||.+.=.+.+..++.++++...+|.+.+
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~----~~~ipvia~GGi~s~~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSD----AVSIPVIALGGAGSLDDLVEVALEAGASAVAA 226 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHh----hCCCCEEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 78888898887641111 11122335777777754 57899999988999999999555445677654
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=89.94 E-value=15 Score=39.28 Aligned_cols=168 Identities=22% Similarity=0.303 Sum_probs=101.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCC--------hhHHHHHHHHHHhhCCCcEEEEeCCC----CCC--HHH-HHHHH
Q 015289 185 VSPAEAAELASKYRKQGFTTLKLKVGKN--------LKEDIEVLRAIRAVHPDSSFILDANE----GYK--PQE-AVEVL 249 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~--------~~~d~~~l~avr~~~~~~~l~vDaN~----~w~--~~~-A~~~~ 249 (409)
.+.++....+..+.+.||..+-+--|.. -+.+.++++.+|+..++..+..=.++ +|+ +++ ...++
T Consensus 23 ~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v 102 (592)
T PRK09282 23 MRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFV 102 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHH
Confidence 3567788888888888999998853321 13678999999998888777654332 343 233 34578
Q ss_pred HHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCC-----CCCCHHHH----HHHHHcCCCCEEEeCCCCC
Q 015289 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-----SCRSLDDV----KKIVKGNLADVINIKLAKV 320 (409)
Q Consensus 250 ~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dE-----s~~~~~~~----~~~i~~~a~div~~k~~~~ 320 (409)
++..+.++....+-.++. |...+....+..+ +.+.-+.... ..+++..+ +++.+.| +|.+.++=+-
T Consensus 103 ~~A~~~Gvd~irif~~ln--d~~n~~~~i~~ak-~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~G-ad~I~i~Dt~- 177 (592)
T PRK09282 103 EKAAENGIDIFRIFDALN--DVRNMEVAIKAAK-KAGAHVQGTISYTTSPVHTIEKYVELAKELEEMG-CDSICIKDMA- 177 (592)
T ss_pred HHHHHCCCCEEEEEEecC--hHHHHHHHHHHHH-HcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC-CCEEEECCcC-
Confidence 888888877556666665 4555554433333 2344443222 23444433 4455555 6888877554
Q ss_pred c---HHHHHHHHHH-HHHcCCcEEEccCCchHHHHHHHHHHHc
Q 015289 321 G---VLGALEIIEV-VRASGLNLMIGGMVETRLAMGFAGHLSA 359 (409)
Q Consensus 321 G---i~~~~~i~~~-A~~~gi~~~~~~~~es~i~~~~~~hlaa 359 (409)
| ..++.++... -++.++++.+|+...++++ .+..++|
T Consensus 178 G~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla--~An~laA 218 (592)
T PRK09282 178 GLLTPYAAYELVKALKEEVDLPVQLHSHCTSGLA--PMTYLKA 218 (592)
T ss_pred CCcCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcH--HHHHHHH
Confidence 4 3445555544 4556888888886555544 3444444
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=89.88 E-value=14 Score=37.09 Aligned_cols=106 Identities=13% Similarity=0.094 Sum_probs=65.5
Q ss_pred HHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCcee-----ecC
Q 015289 191 AELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF-----EQP 265 (409)
Q Consensus 191 ~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i-----EeP 265 (409)
.+.++.+.+.++.-+ +++.-.++++++|+.+=-+++++ +...+.++++.+.+.++....+ +|=
T Consensus 102 a~aa~~~~e~~~~~~------~p~l~~~ii~~vr~a~VtvkiRl------~~~~~~e~a~~l~eAGad~I~ihgrt~~q~ 169 (369)
T TIGR01304 102 AAATRLLQELHAAPL------KPELLGERIAEVRDSGVITAVRV------SPQNAREIAPIVVKAGADLLVIQGTLVSAE 169 (369)
T ss_pred HHHHHHHHHcCCCcc------ChHHHHHHHHHHHhcceEEEEec------CCcCHHHHHHHHHHCCCCEEEEeccchhhh
Confidence 333444444454432 34555677888888642244555 2345677888888888752222 110
Q ss_pred C--CCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 015289 266 V--HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 314 (409)
Q Consensus 266 ~--~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~ 314 (409)
. ...++..+.++.+ ..++||..+. +.+..+.+++++.| +|+|.
T Consensus 170 ~~sg~~~p~~l~~~i~----~~~IPVI~G~-V~t~e~A~~~~~aG-aDgV~ 214 (369)
T TIGR01304 170 HVSTSGEPLNLKEFIG----ELDVPVIAGG-VNDYTTALHLMRTG-AAGVI 214 (369)
T ss_pred ccCCCCCHHHHHHHHH----HCCCCEEEeC-CCCHHHHHHHHHcC-CCEEE
Confidence 0 1235666666654 4689998844 89999999999976 79987
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=89.87 E-value=9.5 Score=35.68 Aligned_cols=130 Identities=20% Similarity=0.211 Sum_probs=82.7
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhC--CCcEEEEeCC-----------CCC--
Q 015289 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH--PDSSFILDAN-----------EGY-- 240 (409)
Q Consensus 176 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~--~~~~l~vDaN-----------~~w-- 240 (409)
+|+....++.+.+++ +++.+.|...+ -+|...-++.+.+..+.+.+ ..+.+.+|+. .+|
T Consensus 72 ~pv~~~GGI~s~~d~----~~~l~~G~~~v--~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~ 145 (243)
T cd04731 72 IPLTVGGGIRSLEDA----RRLLRAGADKV--SINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRK 145 (243)
T ss_pred CCEEEeCCCCCHHHH----HHHHHcCCceE--EECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCce
Confidence 344455556666555 33445676654 45654445666666666654 2478889965 224
Q ss_pred -CHHHHHHHHHHHHhCCCCCcee---e-c-CCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 015289 241 -KPQEAVEVLEKLYEMGVTPVLF---E-Q-PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 314 (409)
Q Consensus 241 -~~~~A~~~~~~L~~~~l~~~~i---E-e-P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~ 314 (409)
+..+..++++.+++.++.-.-+ . + .....+++.++++.+ ..++||.+.=.+.++.++.++++...+|.+.
T Consensus 146 ~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~----~~~~pvia~GGi~~~~di~~~l~~~g~dgv~ 221 (243)
T cd04731 146 PTGLDAVEWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSS----AVNIPVIASGGAGKPEHFVEAFEEGGADAAL 221 (243)
T ss_pred ecCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHHHHhCCCCEEE
Confidence 2445678888898887641111 1 1 122346776777653 5689999988999999999999975578776
Q ss_pred e
Q 015289 315 I 315 (409)
Q Consensus 315 ~ 315 (409)
+
T Consensus 222 v 222 (243)
T cd04731 222 A 222 (243)
T ss_pred E
Confidence 5
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=89.69 E-value=3.8 Score=39.12 Aligned_cols=103 Identities=21% Similarity=0.342 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCceeec--CC-CCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCC---CCE
Q 015289 239 GYKPQEAVEVLEKLYEMGVTPVLFEQ--PV-HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL---ADV 312 (409)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~iEe--P~-~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a---~di 312 (409)
.|+.++.+++++.|.+.|+. .||= |. +++|++.++.+.+. ..++.+..= .-.+..+++.+.+.+. +|.
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~--~iEvg~~~~~~~~~~~~~~l~~~---~~~~~~~~l-~r~~~~~v~~a~~~~~~~~~~~ 89 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVD--VIEAGFPAASPGDFEAVKRIARE---VLNAEICGL-ARAVKKDIDAAAEALKPAKVDR 89 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCC--EEEEeCCCCCHHHHHHHHHHHHh---CCCCEEEEE-ccCCHhhHHHHHHhCCCCCCCE
Confidence 46899999999999999985 8886 54 45667777776542 234555431 1135677888887663 687
Q ss_pred EEeCCC----------CCc----HHHHHHHHHHHHHcCCcEEEccCCch
Q 015289 313 INIKLA----------KVG----VLGALEIIEVVRASGLNLMIGGMVET 347 (409)
Q Consensus 313 v~~k~~----------~~G----i~~~~~i~~~A~~~gi~~~~~~~~es 347 (409)
+.+=.+ +.+ +....++++.|++.|+.+.++++..+
T Consensus 90 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~ 138 (268)
T cd07940 90 IHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDAT 138 (268)
T ss_pred EEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCC
Confidence 766321 111 23456789999999999998877544
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=89.65 E-value=16 Score=33.42 Aligned_cols=140 Identities=14% Similarity=0.195 Sum_probs=99.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceee
Q 015289 184 IVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 263 (409)
Q Consensus 184 ~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE 263 (409)
..++++..+.++.+.+-|++.+.+-... ..-.+.++.+++.+|+ +.|=+..-.|.+++.+.. +.|.+ |+=
T Consensus 12 ~~~~~~a~~ia~al~~gGi~~iEit~~t--p~a~~~I~~l~~~~~~--~~vGAGTVl~~e~a~~ai----~aGA~--Fiv 81 (201)
T PRK06015 12 IDDVEHAVPLARALAAGGLPAIEITLRT--PAALDAIRAVAAEVEE--AIVGAGTILNAKQFEDAA----KAGSR--FIV 81 (201)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCC--ccHHHHHHHHHHHCCC--CEEeeEeCcCHHHHHHHH----HcCCC--EEE
Confidence 4578888999999999999999998863 3456678888887775 778888999999875544 46654 888
Q ss_pred cCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-Cc-HHHHHHHHHHHHHcCCcEEE
Q 015289 264 QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VG-VLGALEIIEVVRASGLNLMI 341 (409)
Q Consensus 264 eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~-~G-i~~~~~i~~~A~~~gi~~~~ 341 (409)
-|.-..+. + +.++ +.++|..-| +.++.++...++.| +|++.+=|.- +| ..-...+..-- -++++++
T Consensus 82 SP~~~~~v--i-~~a~----~~~i~~iPG--~~TptEi~~A~~~G-a~~vK~FPa~~~GG~~yikal~~pl--p~~~l~p 149 (201)
T PRK06015 82 SPGTTQEL--L-AAAN----DSDVPLLPG--AATPSEVMALREEG-YTVLKFFPAEQAGGAAFLKALSSPL--AGTFFCP 149 (201)
T ss_pred CCCCCHHH--H-HHHH----HcCCCEeCC--CCCHHHHHHHHHCC-CCEEEECCchhhCCHHHHHHHHhhC--CCCcEEe
Confidence 88754332 2 3232 468888874 78999999999998 4998888864 44 33222222222 3788888
Q ss_pred ccCC
Q 015289 342 GGMV 345 (409)
Q Consensus 342 ~~~~ 345 (409)
.+-+
T Consensus 150 tGGV 153 (201)
T PRK06015 150 TGGI 153 (201)
T ss_pred cCCC
Confidence 6644
|
|
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=89.63 E-value=16 Score=33.46 Aligned_cols=141 Identities=14% Similarity=0.263 Sum_probs=100.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCcee
Q 015289 183 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 262 (409)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i 262 (409)
-..++++..+.++.+.+.|++.+.+-... ..-.+.++.+++.+|+ +.+=+..-.|.+++.+..+ .|-+ |+
T Consensus 15 r~~~~e~a~~~~~al~~~Gi~~iEit~~t--~~a~~~i~~l~~~~~~--~~vGAGTVl~~~~a~~a~~----aGA~--Fi 84 (204)
T TIGR01182 15 RIDDVDDALPLAKALIEGGLRVLEVTLRT--PVALDAIRLLRKEVPD--ALIGAGTVLNPEQLRQAVD----AGAQ--FI 84 (204)
T ss_pred ecCCHHHHHHHHHHHHHcCCCEEEEeCCC--ccHHHHHHHHHHHCCC--CEEEEEeCCCHHHHHHHHH----cCCC--EE
Confidence 34578889999999999999999998853 4556778888888875 7788899999998755443 6654 88
Q ss_pred ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-CcHHHHHH-HHHHHHHcCCcEE
Q 015289 263 EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALE-IIEVVRASGLNLM 340 (409)
Q Consensus 263 EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~-~Gi~~~~~-i~~~A~~~gi~~~ 340 (409)
=-|....+ ..+.++ +.++|..- -+.++.++...++.| +|++.+=|.- .|....++ +..-- -+++++
T Consensus 85 vsP~~~~~---v~~~~~----~~~i~~iP--G~~TptEi~~A~~~G-a~~vKlFPA~~~GG~~yikal~~pl--p~i~~~ 152 (204)
T TIGR01182 85 VSPGLTPE---LAKHAQ----DHGIPIIP--GVATPSEIMLALELG-ITALKLFPAEVSGGVKMLKALAGPF--PQVRFC 152 (204)
T ss_pred ECCCCCHH---HHHHHH----HcCCcEEC--CCCCHHHHHHHHHCC-CCEEEECCchhcCCHHHHHHHhccC--CCCcEE
Confidence 66765322 333332 56888888 588999999999998 5998888876 45233332 22222 378888
Q ss_pred EccCC
Q 015289 341 IGGMV 345 (409)
Q Consensus 341 ~~~~~ 345 (409)
+.+-+
T Consensus 153 ptGGV 157 (204)
T TIGR01182 153 PTGGI 157 (204)
T ss_pred ecCCC
Confidence 86644
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=89.22 E-value=24 Score=34.87 Aligned_cols=127 Identities=19% Similarity=0.280 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCc-EEEEeCCCCCCHHHHHHHHHHHHhCCCCCceee
Q 015289 185 VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDS-SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 263 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~-~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE 263 (409)
.++++-+++++......+..+-+-+|.. +.|.++++++-+..++. -|.+|...+++... +++++.+++.-
T Consensus 79 ~~~e~~~~fv~~~~~~~~~~~~vavG~~-~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~-i~~ik~ik~~~------- 149 (346)
T PRK05096 79 YSVEEWAAFVNNSSADVLKHVMVSTGTS-DADFEKTKQILALSPALNFICIDVANGYSEHF-VQFVAKAREAW------- 149 (346)
T ss_pred CCHHHHHHHHHhccccccceEEEEecCC-HHHHHHHHHHHhcCCCCCEEEEECCCCcHHHH-HHHHHHHHHhC-------
Confidence 4677777777766555556666677743 48899999999864333 46789999988654 46666555520
Q ss_pred cCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC-----------CCCCc---HHHHHHHH
Q 015289 264 QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK-----------LAKVG---VLGALEII 329 (409)
Q Consensus 264 eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k-----------~~~~G---i~~~~~i~ 329 (409)
.+++|.+| ++.+.+..+.+++.| +|++.+- ++-+| ++...+.+
T Consensus 150 ---------------------P~~~vIaG-NV~T~e~a~~Li~aG-AD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a 206 (346)
T PRK05096 150 ---------------------PDKTICAG-NVVTGEMVEELILSG-ADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECA 206 (346)
T ss_pred ---------------------CCCcEEEe-cccCHHHHHHHHHcC-CCEEEEcccCCccccCccccccChhHHHHHHHHH
Confidence 12455544 467778888899887 5887522 12234 44557788
Q ss_pred HHHHHcCCcEEEcc
Q 015289 330 EVVRASGLNLMIGG 343 (409)
Q Consensus 330 ~~A~~~gi~~~~~~ 343 (409)
+.|+++|++++-.+
T Consensus 207 ~~a~~~gvpiIADG 220 (346)
T PRK05096 207 DAAHGLGGQIVSDG 220 (346)
T ss_pred HHHHHcCCCEEecC
Confidence 99999999998644
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=89.19 E-value=7 Score=37.14 Aligned_cols=114 Identities=16% Similarity=0.193 Sum_probs=75.2
Q ss_pred HHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCC--CcEEEEeCCCC-----------C---CHHHHHHHHHHHHhCCC
Q 015289 194 ASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP--DSSFILDANEG-----------Y---KPQEAVEVLEKLYEMGV 257 (409)
Q Consensus 194 ~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~--~~~l~vDaN~~-----------w---~~~~A~~~~~~L~~~~l 257 (409)
++++...|+..+ -+|...-++.+.++.+.+.++ .+.+.+|...+ | +.....++++.++++++
T Consensus 89 ~~~l~~~G~~~v--vigs~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~ 166 (258)
T PRK01033 89 AKKIFSLGVEKV--SINTAALEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGA 166 (258)
T ss_pred HHHHHHCCCCEE--EEChHHhcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCC
Confidence 444556687654 456434456677777777642 46788897543 3 12234677888888775
Q ss_pred CCcee------ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 015289 258 TPVLF------EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 314 (409)
Q Consensus 258 ~~~~i------EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~ 314 (409)
. ..+ ++....-|++.++++++ ..++||.+.=-+.+.+|+.++++...+|.+.
T Consensus 167 ~-~ii~~~i~~~G~~~G~d~~~i~~~~~----~~~ipvIasGGv~s~eD~~~l~~~~GvdgVi 224 (258)
T PRK01033 167 G-EILLNSIDRDGTMKGYDLELLKSFRN----ALKIPLIALGGAGSLDDIVEAILNLGADAAA 224 (258)
T ss_pred C-EEEEEccCCCCCcCCCCHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHHHHHCCCCEEE
Confidence 4 222 34444457888888764 5789999999999999999999544466654
|
|
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=89.16 E-value=6.5 Score=37.58 Aligned_cols=102 Identities=18% Similarity=0.181 Sum_probs=68.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCceeecCCCCC------------CHHHHHHhHHHhhccCCCeEEe--CCCCCCHHHHHH
Q 015289 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRD------------DWEGLGHVSHIAKDKFGVSVAA--DESCRSLDDVKK 303 (409)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~------------d~~~~~~l~~~~~~~~~ipIa~--dEs~~~~~~~~~ 303 (409)
-.|+.++.+++++.|++.|+. +||==++.. +.+.++++.+..+ .+.+++. .-...+..++..
T Consensus 15 ~~f~~~~~~~ia~~L~~~GVd--~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~l~~ 90 (266)
T cd07944 15 WDFGDEFVKAIYRALAAAGID--YVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK--GNTKIAVMVDYGNDDIDLLEP 90 (266)
T ss_pred ccCCHHHHHHHHHHHHHCCCC--EEEeecCCCCccccCCCccCCCHHHHHHHHhhhc--cCCEEEEEECCCCCCHHHHHH
Confidence 357899999999999999986 999765422 1455666654211 1344443 333345667776
Q ss_pred HHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEEEccC
Q 015289 304 IVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 304 ~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~~~~~ 344 (409)
..+.+ +|.+.+-....-+..++++++.|+++|+.+.++-+
T Consensus 91 a~~~g-v~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~ 130 (266)
T cd07944 91 ASGSV-VDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLM 130 (266)
T ss_pred HhcCC-cCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEE
Confidence 66655 78877654333377889999999999999887643
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=89.10 E-value=25 Score=36.55 Aligned_cols=168 Identities=21% Similarity=0.306 Sum_probs=99.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCC--------hhHHHHHHHHHHhhCCCcEEEE--eC-C-CCCC--HHH-HHHHH
Q 015289 185 VSPAEAAELASKYRKQGFTTLKLKVGKN--------LKEDIEVLRAIRAVHPDSSFIL--DA-N-EGYK--PQE-AVEVL 249 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~--------~~~d~~~l~avr~~~~~~~l~v--Da-N-~~w~--~~~-A~~~~ 249 (409)
.+.++..+.+..+.+.||..+-+--|.. -+.+.++++.+++..++..+.. =+ | -+|. +++ ...++
T Consensus 22 ~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv 101 (467)
T PRK14041 22 MRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFV 101 (467)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHHH
Confidence 3677888888888889999998832211 1246889999999877777643 22 3 2352 344 34467
Q ss_pred HHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCC-----CCCHHHH----HHHHHcCCCCEEEeCCCCC
Q 015289 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADES-----CRSLDDV----KKIVKGNLADVINIKLAKV 320 (409)
Q Consensus 250 ~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs-----~~~~~~~----~~~i~~~a~div~~k~~~~ 320 (409)
+...+.++...-+-.|++ |.+.+....+.++ +.+..+....+ .++...+ +++.+.| +|.+.++=+-
T Consensus 102 ~~A~~~Gvd~irif~~ln--d~~n~~~~i~~ak-~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~G-ad~I~i~Dt~- 176 (467)
T PRK14041 102 KKVAEYGLDIIRIFDALN--DIRNLEKSIEVAK-KHGAHVQGAISYTVSPVHTLEYYLEFARELVDMG-VDSICIKDMA- 176 (467)
T ss_pred HHHHHCCcCEEEEEEeCC--HHHHHHHHHHHHH-HCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC-CCEEEECCcc-
Confidence 887888876555666665 4555554433333 34555553332 2333332 4455556 6888776543
Q ss_pred c---HHHHHHHHH-HHHHcCCcEEEccCCchHHHHHHHHHHHc
Q 015289 321 G---VLGALEIIE-VVRASGLNLMIGGMVETRLAMGFAGHLSA 359 (409)
Q Consensus 321 G---i~~~~~i~~-~A~~~gi~~~~~~~~es~i~~~~~~hlaa 359 (409)
| ..++.++.. +-++.++++.+|+....+++ .+-.++|
T Consensus 177 G~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA--~AN~laA 217 (467)
T PRK14041 177 GLLTPKRAYELVKALKKKFGVPVEVHSHCTTGLA--SLAYLAA 217 (467)
T ss_pred CCcCHHHHHHHHHHHHHhcCCceEEEecCCCCcH--HHHHHHH
Confidence 5 334555443 34456899998886544444 3434444
|
|
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=89.00 E-value=8.9 Score=40.56 Aligned_cols=159 Identities=15% Similarity=0.144 Sum_probs=97.5
Q ss_pred eeeeeeecCCCHHH-------HHHHHHHHHHcCCCeEEEecC--CCh--------hHHHHHHHHHHhh-CCC-cEEEEeC
Q 015289 176 ITTDITIPIVSPAE-------AAELASKYRKQGFTTLKLKVG--KNL--------KEDIEVLRAIRAV-HPD-SSFILDA 236 (409)
Q Consensus 176 i~~~~~i~~~~~~~-------~~~~~~~~~~~Gf~~~KiKvG--~~~--------~~d~~~l~avr~~-~~~-~~l~vDa 236 (409)
+|+..-.++.+.++ ..+.++++...|...+=+.-. .++ ..+-+.++.+-+. +.+ +.+.+|+
T Consensus 315 ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~ 394 (538)
T PLN02617 315 VPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDP 394 (538)
T ss_pred CCEEEcCCccccccccccccchHHHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEec
Confidence 44444445555443 356778888888865544321 111 1245778888777 555 7888997
Q ss_pred CCC----------------------------------C---CHHHHHHHHHHHHhCCCCCceeecCCCC------CCHHH
Q 015289 237 NEG----------------------------------Y---KPQEAVEVLEKLYEMGVTPVLFEQPVHR------DDWEG 273 (409)
Q Consensus 237 N~~----------------------------------w---~~~~A~~~~~~L~~~~l~~~~iEeP~~~------~d~~~ 273 (409)
... | +--++.++++++++++.. ..+=-=+.. .|++.
T Consensus 395 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gag-eil~t~id~DGt~~G~d~~l 473 (538)
T PLN02617 395 RRVYVKDPSDVPFKTVKVTNPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAG-EILLNCIDCDGQGKGFDIEL 473 (538)
T ss_pred CcCcccCccccccccccccccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCC-EEEEeeccccccccCcCHHH
Confidence 532 2 122567899999998764 333333333 36777
Q ss_pred HHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe-CCCCCcHHHHHHHHHHHHHcCCcE
Q 015289 274 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI-KLAKVGVLGALEIIEVVRASGLNL 339 (409)
Q Consensus 274 ~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~-k~~~~Gi~~~~~i~~~A~~~gi~~ 339 (409)
++++++ ..++||.+.=-+.++.++.++++...+|.+.. .+-..+-....++-+..++.|+++
T Consensus 474 ~~~v~~----~~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k~~l~~~gi~v 536 (538)
T PLN02617 474 VKLVSD----AVTIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVKEHLLEEGIET 536 (538)
T ss_pred HHHHHh----hCCCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHHHHHHHCCCcc
Confidence 777764 67899999888999999999998655555432 222223122334445666677765
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.92 E-value=12 Score=37.71 Aligned_cols=90 Identities=19% Similarity=0.224 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeec-------CC-CCC-CHHHHHHhHHHhhc
Q 015289 213 LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ-------PV-HRD-DWEGLGHVSHIAKD 283 (409)
Q Consensus 213 ~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEe-------P~-~~~-d~~~~~~l~~~~~~ 283 (409)
++.-.++++++++.+ +.+.+-. +..++.++++.+.+.++. +|.= -- ... ++..+.++.+
T Consensus 117 p~l~~~iv~~~~~~~--V~v~vr~----~~~~~~e~a~~l~eaGvd--~I~vhgrt~~~~h~~~~~~~~~i~~~ik---- 184 (368)
T PRK08649 117 PELITERIAEIRDAG--VIVAVSL----SPQRAQELAPTVVEAGVD--LFVIQGTVVSAEHVSKEGEPLNLKEFIY---- 184 (368)
T ss_pred HHHHHHHHHHHHhCe--EEEEEec----CCcCHHHHHHHHHHCCCC--EEEEeccchhhhccCCcCCHHHHHHHHH----
Confidence 344455666666642 3222222 233445666777777664 3331 11 111 4555665543
Q ss_pred cCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 284 ~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k 316 (409)
+.++||..+. +.+.++.+++++.| +|++.+-
T Consensus 185 ~~~ipVIaG~-V~t~e~A~~l~~aG-AD~V~VG 215 (368)
T PRK08649 185 ELDVPVIVGG-CVTYTTALHLMRTG-AAGVLVG 215 (368)
T ss_pred HCCCCEEEeC-CCCHHHHHHHHHcC-CCEEEEC
Confidence 4589998854 89999999999976 6998654
|
|
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=88.64 E-value=17 Score=33.50 Aligned_cols=109 Identities=15% Similarity=0.229 Sum_probs=71.9
Q ss_pred HHHHHHHHcCCCeEEEecCC--Ch--hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCcee-----
Q 015289 192 ELASKYRKQGFTTLKLKVGK--NL--KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF----- 262 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG~--~~--~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i----- 262 (409)
++++.+.+.|...+=+-... .+ +...+.++.+++. +++.++++.+ +.+++ +.+.+.+.. |+
T Consensus 79 ~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~~v~---t~ee~----~~a~~~G~d--~i~~~~~ 148 (221)
T PRK01130 79 KEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMADCS---TLEEG----LAAQKLGFD--FIGTTLS 148 (221)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEEeCC---CHHHH----HHHHHcCCC--EEEcCCc
Confidence 34566677898866654431 11 3445667777876 7888998876 66665 345555543 33
Q ss_pred --ecC---CCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 263 --EQP---VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 263 --EeP---~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
+.. ....+++.++++++ ..++||..+=.+.+..++.++++.| +|.+.+
T Consensus 149 g~t~~~~~~~~~~~~~i~~i~~----~~~iPvia~GGI~t~~~~~~~l~~G-adgV~i 201 (221)
T PRK01130 149 GYTEETKKPEEPDFALLKELLK----AVGCPVIAEGRINTPEQAKKALELG-AHAVVV 201 (221)
T ss_pred eeecCCCCCCCcCHHHHHHHHH----hCCCCEEEECCCCCHHHHHHHHHCC-CCEEEE
Confidence 211 12234565666654 4589999998999999999999988 688865
|
|
| >PLN02411 12-oxophytodienoate reductase | Back alignment and domain information |
|---|
Probab=88.26 E-value=12 Score=37.86 Aligned_cols=123 Identities=11% Similarity=0.151 Sum_probs=72.3
Q ss_pred HHHHHHHHHHcCCCeEEEecCC---------------------C----hhHHHHHHHHHHhh-CCC-cEEEEeCC-----
Q 015289 190 AAELASKYRKQGFTTLKLKVGK---------------------N----LKEDIEVLRAIRAV-HPD-SSFILDAN----- 237 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~----~~~d~~~l~avr~~-~~~-~~l~vDaN----- 237 (409)
.++-++++++.||..|-|+.+. + .+--++.+++||++ +++ +.+++-+-
T Consensus 167 f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~ 246 (391)
T PLN02411 167 YRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLD 246 (391)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccC
Confidence 4556677788999999999651 1 22346789999997 666 34444321
Q ss_pred --CCCCHHHHHHHHHHHHhC------CCCCceeecCCC-----------CCCHH-HHHHhHHHhhccCCCeEEeCCCCCC
Q 015289 238 --EGYKPQEAVEVLEKLYEM------GVTPVLFEQPVH-----------RDDWE-GLGHVSHIAKDKFGVSVAADESCRS 297 (409)
Q Consensus 238 --~~w~~~~A~~~~~~L~~~------~l~~~~iEeP~~-----------~~d~~-~~~~l~~~~~~~~~ipIa~dEs~~~ 297 (409)
..-+.+++..+.+.|+.. ++ .+|+==.. ..... ....+++.+++..++||..-=.+ +
T Consensus 247 ~~~~~~~~~~~~~~~~l~~~~~~~g~~v--d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v~~pvi~~G~i-~ 323 (391)
T PLN02411 247 ATDSDPLNLGLAVVERLNKLQLQNGSKL--AYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAYQGTFMCSGGF-T 323 (391)
T ss_pred CCCCcchhhHHHHHHHHHHHHhhcCCCe--EEEEecCCcccccCCCcccccCCccchhHHHHHHHHHcCCCEEEECCC-C
Confidence 122356677777777752 23 24421100 00000 01122222344677888877666 5
Q ss_pred HHHHHHHHHcCCCCEEEe
Q 015289 298 LDDVKKIVKGNLADVINI 315 (409)
Q Consensus 298 ~~~~~~~i~~~a~div~~ 315 (409)
.....++++.|.+|.|-+
T Consensus 324 ~~~a~~~l~~g~aDlV~~ 341 (391)
T PLN02411 324 RELGMQAVQQGDADLVSY 341 (391)
T ss_pred HHHHHHHHHcCCCCEEEE
Confidence 678889999999998743
|
|
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=88.03 E-value=6.1 Score=38.16 Aligned_cols=57 Identities=18% Similarity=0.297 Sum_probs=46.6
Q ss_pred ccCC-CeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 283 DKFG-VSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 283 ~~~~-ipIa~d-Es~~~~~~~~~~i~~~a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
++.+ +||++. ....+.+.+++.++.| ++.+|+|.+... +..+.++.++|+.+|+.+.
T Consensus 70 ~~~~~vpv~lhlDH~~~~e~i~~ai~~G-f~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve 132 (282)
T TIGR01859 70 ERMSIVPVALHLDHGSSYESCIKAIKAG-FSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVE 132 (282)
T ss_pred HHCCCCeEEEECCCCCCHHHHHHHHHcC-CCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 4567 999987 5556788889999877 799999999886 3457899999999999765
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=88.02 E-value=8.6 Score=35.59 Aligned_cols=123 Identities=18% Similarity=0.272 Sum_probs=78.9
Q ss_pred eecCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhC-C-CcEEEEeCCC------CC---CHHHHHHHH
Q 015289 181 TIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-P-DSSFILDANE------GY---KPQEAVEVL 249 (409)
Q Consensus 181 ~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~-~-~~~l~vDaN~------~w---~~~~A~~~~ 249 (409)
..++.++++ ++++.+.|.. ++=+|...-.|.+.++.+.+.+ . .+.+.+|... +| +..+..+++
T Consensus 79 ~GgI~~~e~----~~~~~~~Gad--~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~ 152 (234)
T cd04732 79 GGGIRSLED----IERLLDLGVS--RVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELA 152 (234)
T ss_pred eCCcCCHHH----HHHHHHcCCC--EEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHH
Confidence 334556544 4455567855 4456755556777788777764 3 4667778542 23 123445678
Q ss_pred HHHHhCCCCCcee------ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 250 EKLYEMGVTPVLF------EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 250 ~~L~~~~l~~~~i------EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
+.+++.+.. .++ ++.....|++.++++++ .+++||..+--+.+..++..+++.| +|.+.+
T Consensus 153 ~~~~~~ga~-~iii~~~~~~g~~~g~~~~~i~~i~~----~~~ipvi~~GGi~~~~di~~~~~~G-a~gv~v 218 (234)
T cd04732 153 KRFEELGVK-AIIYTDISRDGTLSGPNFELYKELAA----ATGIPVIASGGVSSLDDIKALKELG-VAGVIV 218 (234)
T ss_pred HHHHHcCCC-EEEEEeecCCCccCCCCHHHHHHHHH----hcCCCEEEecCCCCHHHHHHHHHCC-CCEEEE
Confidence 888887653 222 22233346777787764 5689999999999999999999875 566654
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=87.92 E-value=29 Score=34.19 Aligned_cols=117 Identities=20% Similarity=0.277 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHcCCCeEEEecCC-ChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceee----
Q 015289 189 EAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE---- 263 (409)
Q Consensus 189 ~~~~~~~~~~~~Gf~~~KiKvG~-~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE---- 263 (409)
+..+.++.+++.|...+-+.... +.+.-.+.++.+|+.+|++.+++ ...-+.++|... .+.+.. +|=
T Consensus 94 ~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~--G~v~t~~~A~~l----~~aGaD--~I~vg~g 165 (325)
T cd00381 94 DDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIA--GNVVTAEAARDL----IDAGAD--GVKVGIG 165 (325)
T ss_pred hHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEE--CCCCCHHHHHHH----HhcCCC--EEEECCC
Confidence 34566777888899888876642 22444677889999888888887 333566665443 445543 321
Q ss_pred ------c----CCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 264 ------Q----PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 264 ------e----P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
. ....-++..+.++.+.+ ...++||.++--+.+..++.+++..| +|.+++
T Consensus 166 ~G~~~~t~~~~g~g~p~~~~i~~v~~~~-~~~~vpVIA~GGI~~~~di~kAla~G-A~~Vmi 225 (325)
T cd00381 166 PGSICTTRIVTGVGVPQATAVADVAAAA-RDYGVPVIADGGIRTSGDIVKALAAG-ADAVML 225 (325)
T ss_pred CCcCcccceeCCCCCCHHHHHHHHHHHH-hhcCCcEEecCCCCCHHHHHHHHHcC-CCEEEe
Confidence 0 11222455556665432 24579999999999999999999988 488766
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=87.65 E-value=24 Score=33.68 Aligned_cols=92 Identities=13% Similarity=0.077 Sum_probs=57.0
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecC----------------------CChhHHHHHHHHHHhhCCC--cE
Q 015289 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG----------------------KNLKEDIEVLRAIRAVHPD--SS 231 (409)
Q Consensus 176 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG----------------------~~~~~d~~~l~avr~~~~~--~~ 231 (409)
+-.|.+.+.-+.+...+.++.+.+.|-..+.+-+- ..++.-.+.++++|+. .+ +-
T Consensus 17 li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~-~~~p~v 95 (263)
T CHL00200 17 LIPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGE-IKAPIV 95 (263)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCEE
Confidence 33466666666677777777777777777776652 1233445666666643 22 23
Q ss_pred EEEeCCCCC------------------------CHHHHHHHHHHHHhCCCCCceeecCCCC
Q 015289 232 FILDANEGY------------------------KPQEAVEVLEKLYEMGVTPVLFEQPVHR 268 (409)
Q Consensus 232 l~vDaN~~w------------------------~~~~A~~~~~~L~~~~l~~~~iEeP~~~ 268 (409)
+|.=.|--| ..+++.++.+.++++|+.+.++=-|..+
T Consensus 96 lm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~ 156 (263)
T CHL00200 96 IFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSS 156 (263)
T ss_pred EEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 566666322 3567778888888888776666666654
|
|
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=87.65 E-value=14 Score=35.94 Aligned_cols=100 Identities=15% Similarity=0.207 Sum_probs=71.8
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeEEEe-------cC-------CChhHHHHHHHHHHhh--CCCcEE--EEeCCCCCCHHH
Q 015289 183 PIVSPAEAAELASKYRKQGFTTLKLK-------VG-------KNLKEDIEVLRAIRAV--HPDSSF--ILDANEGYKPQE 244 (409)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~Gf~~~KiK-------vG-------~~~~~d~~~l~avr~~--~~~~~l--~vDaN~~w~~~~ 244 (409)
|..++.++...++++.+.|...+-|. .| .+.++-+++|++++++ .+++-| |.|+......++
T Consensus 87 GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~de 166 (294)
T TIGR02319 87 GYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDE 166 (294)
T ss_pred CCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHH
Confidence 44556667777888888998888762 22 1445567888888886 345443 679987788999
Q ss_pred HHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeE
Q 015289 245 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSV 289 (409)
Q Consensus 245 A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipI 289 (409)
|++.++...+.|-...|+|-|.. .+.++++.+ ....|+
T Consensus 167 aI~Ra~aY~eAGAD~ifi~~~~~---~~ei~~~~~----~~~~P~ 204 (294)
T TIGR02319 167 AIRRSREYVAAGADCIFLEAMLD---VEEMKRVRD----EIDAPL 204 (294)
T ss_pred HHHHHHHHHHhCCCEEEecCCCC---HHHHHHHHH----hcCCCe
Confidence 99999999998877779987654 455677764 345566
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=87.31 E-value=6.9 Score=37.78 Aligned_cols=57 Identities=14% Similarity=0.223 Sum_probs=46.5
Q ss_pred ccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 283 DKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 283 ~~~~ipIa~d-Es~~~~~~~~~~i~~~a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
++..+||++- ....+.+.+.++++.| ++.||+|-.... +..++++.++|+++|+++-
T Consensus 71 ~~~~vpv~lHlDH~~~~e~i~~Al~~G-~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~ve 132 (281)
T PRK06806 71 KQAKVPVAVHFDHGMTFEKIKEALEIG-FTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVE 132 (281)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 3568999965 3467888899999987 799999988875 4457899999999999874
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=87.17 E-value=18 Score=34.96 Aligned_cols=122 Identities=12% Similarity=0.126 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEE------e----cC-------CChhHHHHHHHHHHhh--CCCcEE--EEeCC-CCCCH
Q 015289 185 VSPAEAAELASKYRKQGFTTLKL------K----VG-------KNLKEDIEVLRAIRAV--HPDSSF--ILDAN-EGYKP 242 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~Ki------K----vG-------~~~~~d~~~l~avr~~--~~~~~l--~vDaN-~~w~~ 242 (409)
.++.++...++++.+.|...+-+ | .| .+.++=++++++++++ ++++.| +.|+- .....
T Consensus 89 g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~ 168 (285)
T TIGR02320 89 GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGM 168 (285)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCH
Confidence 58888888899999999988888 1 11 2445667788888875 456544 56764 35679
Q ss_pred HHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhcc-CCCeEEeCCCCCCHHHHHHHHHcC
Q 015289 243 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDK-FGVSVAADESCRSLDDVKKIVKGN 308 (409)
Q Consensus 243 ~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~-~~ipIa~dEs~~~~~~~~~~i~~~ 308 (409)
++|++.+++..+.|-...|+|-+. .+.+.++++.+.++.. -++|+..-...+....+.++-+.|
T Consensus 169 ~eAi~Ra~ay~eAGAD~ifv~~~~--~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG 233 (285)
T TIGR02320 169 EDALKRAEAYAEAGADGIMIHSRK--KDPDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAG 233 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCC--CCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHHHHcC
Confidence 999999999999987767998422 3455666666532211 135776533222222344555555
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.15 E-value=36 Score=35.68 Aligned_cols=118 Identities=18% Similarity=0.235 Sum_probs=80.8
Q ss_pred HHHHHHHHHcCCCeEEEecCC-ChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceee---cCC
Q 015289 191 AELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE---QPV 266 (409)
Q Consensus 191 ~~~~~~~~~~Gf~~~KiKvG~-~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE---eP~ 266 (409)
.+.++.+++.|...+-+.... +-..-++.++.+|+.+|++.|++ ..-.|.++|.... +.|.. +|= -|-
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~a--G~V~t~~~a~~~~----~aGad--~I~vg~g~G 314 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIA--GNVVTADQAKNLI----DAGAD--GLRIGMGSG 314 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEE--CCcCCHHHHHHHH----HcCCC--EEEECCcCC
Confidence 677888889999999888742 12234678899999888888877 4556777765443 46654 552 121
Q ss_pred C-----------CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 015289 267 H-----------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (409)
Q Consensus 267 ~-----------~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~ 318 (409)
. .-++..+.++++.+ ++.++||..|--+.+..|+.+++..|+ |.+++--.
T Consensus 315 s~~~t~~~~~~g~p~~~ai~~~~~~~-~~~~v~vIadGGi~~~~di~kAla~GA-~~Vm~G~~ 375 (495)
T PTZ00314 315 SICITQEVCAVGRPQASAVYHVARYA-RERGVPCIADGGIKNSGDICKALALGA-DCVMLGSL 375 (495)
T ss_pred cccccchhccCCCChHHHHHHHHHHH-hhcCCeEEecCCCCCHHHHHHHHHcCC-CEEEECch
Confidence 0 11344444554432 356899999999999999999999985 88876433
|
|
| >cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols | Back alignment and domain information |
|---|
Probab=86.84 E-value=29 Score=32.93 Aligned_cols=160 Identities=16% Similarity=0.144 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHH-HHHHhhC--CCcEEEEeCC------CCCCHHHHHHHH-HHHHhC
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVL-RAIRAVH--PDSSFILDAN------EGYKPQEAVEVL-EKLYEM 255 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l-~avr~~~--~~~~l~vDaN------~~w~~~~A~~~~-~~L~~~ 255 (409)
+.++..+.++.+.+.|++.|-.--.-......+.+ +++++.. .++.|..=.. ..++.+...+-+ +.|+++
T Consensus 27 ~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L 106 (285)
T cd06660 27 DEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRL 106 (285)
T ss_pred CHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 45677788888899999998643221111123333 3444442 2333332221 125666544432 334444
Q ss_pred C---CCCceeecCCCCCC--HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHc--CCCCEEEeCCCCCcHHHHHHH
Q 015289 256 G---VTPVLFEQPVHRDD--WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG--NLADVINIKLAKVGVLGALEI 328 (409)
Q Consensus 256 ~---l~~~~iEeP~~~~d--~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~--~a~div~~k~~~~Gi~~~~~i 328 (409)
+ +.++++-.|-.... .+.+..|.+. + +-|.==+.|=|.++...+.++++. ..+|++|+...-+--.....+
T Consensus 107 ~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l-~-~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ 184 (285)
T cd06660 107 GTDYIDLYLLHWPDPDTPDIEETLRALEEL-V-KEGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEEL 184 (285)
T ss_pred CCCceeEEEecCCCCCCCCHHHHHHHHHHH-H-HcCCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHH
Confidence 3 33346666654322 2333333332 2 224333455577888888888887 789999987765421111268
Q ss_pred HHHHHHcCCcEEEccCCch
Q 015289 329 IEVVRASGLNLMIGGMVET 347 (409)
Q Consensus 329 ~~~A~~~gi~~~~~~~~es 347 (409)
...|+++|+.++..+.+..
T Consensus 185 ~~~~~~~gi~v~~~~~l~~ 203 (285)
T cd06660 185 LPYCREHGIGVIAYSPLAG 203 (285)
T ss_pred HHHHHHcCcEEEEeccccC
Confidence 8999999999998776543
|
AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others. |
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=86.76 E-value=8.8 Score=37.17 Aligned_cols=57 Identities=14% Similarity=0.241 Sum_probs=47.9
Q ss_pred ccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 283 DKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 283 ~~~~ipIa~d-Es~~~~~~~~~~i~~~a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
++.++||++- ....+...+.++++.| ++-|.+|-+..- +..++++.++|+++|+.+-
T Consensus 71 ~~~~VPValHLDHg~~~e~i~~ai~~G-FtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VE 132 (286)
T PRK12738 71 TTYNMPLALHLDHHESLDDIRRKVHAG-VRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVE 132 (286)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 4678999976 3566888999999987 699999999874 5678999999999999874
|
|
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.53 E-value=17 Score=35.13 Aligned_cols=102 Identities=10% Similarity=0.125 Sum_probs=64.5
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCceeecCC---CCCCHHHHHHhHHHhhccCCCeEEeC-CCCCCHHHHHHHHHcCCCC
Q 015289 236 ANEGYKPQEAVEVLEKLYEMGVTPVLFEQPV---HRDDWEGLGHVSHIAKDKFGVSVAAD-ESCRSLDDVKKIVKGNLAD 311 (409)
Q Consensus 236 aN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~---~~~d~~~~~~l~~~~~~~~~ipIa~d-Es~~~~~~~~~~i~~~a~d 311 (409)
|-..++.+.+..+++..++.+. |..|+=-- ....++.+..+.....++..+||++- ....+.+.+.+.++.| ++
T Consensus 22 Afn~~n~e~~~avi~AAe~~~~-PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~Ai~~G-ft 99 (286)
T PRK06801 22 AFNVLDSHFLRALFAAAKQERS-PFIINIAEVHFKYISLESLVEAVKFEAARHDIPVVLNLDHGLHFEAVVRALRLG-FS 99 (286)
T ss_pred EEeeCCHHHHHHHHHHHHHHCC-CEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhC-Cc
Confidence 3334456665556666555542 33332111 11122333333333334678999976 3466788899999987 79
Q ss_pred EEEeCCCCCc----HHHHHHHHHHHHHcCCcE
Q 015289 312 VINIKLAKVG----VLGALEIIEVVRASGLNL 339 (409)
Q Consensus 312 iv~~k~~~~G----i~~~~~i~~~A~~~gi~~ 339 (409)
.|++|-+..- +..++++.++|+.+|+.+
T Consensus 100 SVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~V 131 (286)
T PRK06801 100 SVMFDGSTLEYEENVRQTREVVKMCHAVGVSV 131 (286)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 9999988763 556889999999999987
|
|
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=86.27 E-value=10 Score=37.58 Aligned_cols=100 Identities=16% Similarity=0.130 Sum_probs=69.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCceeec--------------CCCCCCHHHHHHhHHHhhccCCCeEE--eCCCCCCHHHH
Q 015289 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQ--------------PVHRDDWEGLGHVSHIAKDKFGVSVA--ADESCRSLDDV 301 (409)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iEe--------------P~~~~d~~~~~~l~~~~~~~~~ipIa--~dEs~~~~~~~ 301 (409)
..|+.++.+++++.|.+.|+. .||= |....+++.++.+++. ..+..++ +.=...+..++
T Consensus 20 ~~f~~~~~~~i~~~L~~aGv~--~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~---~~~~~~~~ll~pg~~~~~dl 94 (337)
T PRK08195 20 HQYTLEQVRAIARALDAAGVP--VIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEV---VKQAKIAALLLPGIGTVDDL 94 (337)
T ss_pred CccCHHHHHHHHHHHHHcCCC--EEEeecCCCCCCccccCCCCCCCHHHHHHHHHHh---CCCCEEEEEeccCcccHHHH
Confidence 446899999999999999985 8887 2223456666766542 2234444 32234567889
Q ss_pred HHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccC
Q 015289 302 KKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 302 ~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~ 344 (409)
+.+.+.| +|++.+-. .+. .....+.++.|+++|+.+...-|
T Consensus 95 ~~a~~~g-vd~iri~~-~~~e~~~~~~~i~~ak~~G~~v~~~l~ 136 (337)
T PRK08195 95 KMAYDAG-VRVVRVAT-HCTEADVSEQHIGLARELGMDTVGFLM 136 (337)
T ss_pred HHHHHcC-CCEEEEEE-ecchHHHHHHHHHHHHHCCCeEEEEEE
Confidence 8888876 68877643 334 55678899999999999876443
|
|
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=86.13 E-value=8.6 Score=37.04 Aligned_cols=103 Identities=19% Similarity=0.202 Sum_probs=67.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCceeecCCCC---CCHHHHHHhHHHhhccCCCeEEeCC-CCCCHHHHHHHHHcCCCC
Q 015289 236 ANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR---DDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLAD 311 (409)
Q Consensus 236 aN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~---~d~~~~~~l~~~~~~~~~ipIa~dE-s~~~~~~~~~~i~~~a~d 311 (409)
|-..++.+.+..+++..++.+- |..|+=--.. ..++.+..+.+.+.++..+||++-= ...+++++.+.++.| ++
T Consensus 17 AfN~~n~e~~~avi~AAe~~~s-PvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~lHLDH~~~~~~i~~ai~~G-ft 94 (276)
T cd00947 17 AFNINNLETLKAILEAAEETRS-PVILQISEGAIKYAGLELLVAMVKAAAERASVPVALHLDHGSSFELIKRAIRAG-FS 94 (276)
T ss_pred EEeeCCHHHHHHHHHHHHHhCC-CEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhC-CC
Confidence 3344566666666666666552 3444321111 1122233332223346789999763 456789999999988 89
Q ss_pred EEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 312 VINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 312 iv~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
-+.+|-+..= +..++++.++|+++|+.+-
T Consensus 95 SVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VE 127 (276)
T cd00947 95 SVMIDGSHLPFEENVAKTKEVVELAHAYGVSVE 127 (276)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 9999999864 6678999999999999874
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=86.11 E-value=33 Score=32.90 Aligned_cols=177 Identities=21% Similarity=0.270 Sum_probs=99.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCC--------ChhHHHHHHHHHHhhCCCcEEEEeCC----CCCC--HHH-HHHHHH
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGK--------NLKEDIEVLRAIRAVHPDSSFILDAN----EGYK--PQE-AVEVLE 250 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~--------~~~~d~~~l~avr~~~~~~~l~vDaN----~~w~--~~~-A~~~~~ 250 (409)
+.++..+.+..+.+.|+..+-+-.+. --+.+.++++.+++..++.+|..=++ -+|. +.. -...++
T Consensus 19 ~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~ 98 (275)
T cd07937 19 RTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVE 98 (275)
T ss_pred cHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHH
Confidence 56777777888888999998876542 13467889999999876665542121 1221 112 245677
Q ss_pred HHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEe-----CCCCCCHHHHHH----HHHcCCCCEEEeCCCC-C
Q 015289 251 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-----DESCRSLDDVKK----IVKGNLADVINIKLAK-V 320 (409)
Q Consensus 251 ~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~-----dEs~~~~~~~~~----~i~~~a~div~~k~~~-~ 320 (409)
...+.++....+-.|++ |++.+.+..+.++ ..+..+.. +-+..+...+.+ +.+.| +|.+.+.=+- +
T Consensus 99 ~~~~~g~~~iri~~~~~--~~~~~~~~i~~ak-~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~G-a~~i~l~DT~G~ 174 (275)
T cd07937 99 KAAKNGIDIFRIFDALN--DVRNLEVAIKAVK-KAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMG-ADSICIKDMAGL 174 (275)
T ss_pred HHHHcCCCEEEEeecCC--hHHHHHHHHHHHH-HCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcC-CCEEEEcCCCCC
Confidence 77787776445666665 5665555444333 23444432 224455555443 34455 6777665432 2
Q ss_pred c-HHHHHHHHHH-HHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceec
Q 015289 321 G-VLGALEIIEV-VRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFID 368 (409)
Q Consensus 321 G-i~~~~~i~~~-A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e 368 (409)
+ ..+..++... -+..++++.+|+....+ ++.+-.++|.-..+.+++
T Consensus 175 ~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~G--lA~aN~laA~~aGa~~vd 222 (275)
T cd07937 175 LTPYAAYELVKALKKEVGLPIHLHTHDTSG--LAVATYLAAAEAGVDIVD 222 (275)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEecCCCC--hHHHHHHHHHHhCCCEEE
Confidence 2 3455555544 44557888888754434 444444444333345544
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=85.67 E-value=21 Score=34.46 Aligned_cols=114 Identities=17% Similarity=0.168 Sum_probs=73.0
Q ss_pred HHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhh-C-CCcEE-----EE----eC----CCCC-CHHHHHHHHHHHHh
Q 015289 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-H-PDSSF-----IL----DA----NEGY-KPQEAVEVLEKLYE 254 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~-~-~~~~l-----~v----Da----N~~w-~~~~A~~~~~~L~~ 254 (409)
+.+.++++.||+.+-+.-. .++++.++..+.+.+. . -++.+ .+ |. ...| ++++|.+|+++..-
T Consensus 88 e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~Tgv 167 (283)
T PRK07998 88 EDVKQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGC 167 (283)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCc
Confidence 3445567889999999765 4567788877777652 1 22211 01 11 1124 59999999886542
Q ss_pred ----------CCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 255 ----------MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 255 ----------~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~-dEs~~~~~~~~~~i~~~a~div~~k 316 (409)
.|+ |-. +.-|++.++++++ .+++|+.+ |=|=...++++++++.|.. =+|+.
T Consensus 168 D~LAvaiGt~HG~---Y~~---p~l~~~~l~~I~~----~~~vPLVlHGgSG~~~e~~~~ai~~Gi~-KiNi~ 229 (283)
T PRK07998 168 DMLAVSIGNVHGL---EDI---PRIDIPLLKRIAE----VSPVPLVIHGGSGIPPEILRSFVNYKVA-KVNIA 229 (283)
T ss_pred CeeehhccccccC---CCC---CCcCHHHHHHHHh----hCCCCEEEeCCCCCCHHHHHHHHHcCCc-EEEEC
Confidence 121 322 5568888998875 57899885 4566666889999998854 44553
|
|
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=85.61 E-value=13 Score=35.94 Aligned_cols=57 Identities=11% Similarity=0.226 Sum_probs=47.7
Q ss_pred ccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 283 DKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 283 ~~~~ipIa~d-Es~~~~~~~~~~i~~~a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
++..+||++- ....+++.+.++++.| ++-|.+|.+..- +..++++.++|+.+|+.+-
T Consensus 71 ~~~~VPV~lHLDHg~~~e~i~~Ai~~G-ftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VE 132 (284)
T PRK09195 71 KQYHHPLALHLDHHEKFDDIAQKVRSG-VRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVE 132 (284)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 4678999976 3566889999999998 699999999874 5568999999999998773
|
|
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=85.54 E-value=6.6 Score=36.07 Aligned_cols=71 Identities=23% Similarity=0.167 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCceeec---CCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 240 YKPQEAVEVLEKLYEMGVTPVLFEQ---PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 240 w~~~~A~~~~~~L~~~~l~~~~iEe---P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
.+++++..++...+.+++.+.|+|. -..+-+.+-.+++++ .+++|+..|=-+.+.++++++++.| +|.+.+
T Consensus 131 ~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~----~~~~Pv~vGGGIrs~e~a~~l~~~G-AD~VVV 204 (205)
T TIGR01769 131 NKPEIAAAYCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKK----ASGIPLIVGGGIRSPEIAYEIVLAG-ADAIVT 204 (205)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHH----hhCCCEEEeCCCCCHHHHHHHHHcC-CCEEEe
Confidence 6789999999999988888788998 333345666666654 5689999999999999999998877 687754
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=85.50 E-value=14 Score=35.73 Aligned_cols=57 Identities=16% Similarity=0.244 Sum_probs=47.7
Q ss_pred ccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 283 DKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 283 ~~~~ipIa~d-Es~~~~~~~~~~i~~~a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
++.++||++- ....+.+.+.+.++.| ++-|++|-+..= +..++++.++|+++|+.+-
T Consensus 69 ~~~~VPValHLDHg~~~e~i~~ai~~G-FtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VE 130 (282)
T TIGR01858 69 TTYNMPLALHLDHHESLDDIRQKVHAG-VRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVE 130 (282)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 4678999976 3466889999999997 699999999864 5568999999999999874
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.45 E-value=20 Score=37.53 Aligned_cols=104 Identities=18% Similarity=0.338 Sum_probs=68.8
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCC-CCC---CHHHHHHhHHHhhcc-CCCeEEeCCCCCCHHHHHHHH
Q 015289 231 SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPV-HRD---DWEGLGHVSHIAKDK-FGVSVAADESCRSLDDVKKIV 305 (409)
Q Consensus 231 ~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~-~~~---d~~~~~~l~~~~~~~-~~ipIa~dEs~~~~~~~~~~i 305 (409)
+|+|-+--+-+.++ .+.++.|-+.++. .||=-. +.+ .++.++++++ . .+++|.+| ++.+.++.+.++
T Consensus 229 rL~Vgaavg~~~~~-~~~~~~l~~ag~d--~i~id~a~G~s~~~~~~i~~ik~----~~~~~~v~aG-~V~t~~~a~~~~ 300 (495)
T PTZ00314 229 QLLVGAAISTRPED-IERAAALIEAGVD--VLVVDSSQGNSIYQIDMIKKLKS----NYPHVDIIAG-NVVTADQAKNLI 300 (495)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHCCCC--EEEEecCCCCchHHHHHHHHHHh----hCCCceEEEC-CcCCHHHHHHHH
Confidence 45554433334444 6788888888875 677333 222 2344555553 3 36899997 889999999999
Q ss_pred HcCCCCEEEeCCC-----------CCc---HHHHHHHHHHHHHcCCcEEEcc
Q 015289 306 KGNLADVINIKLA-----------KVG---VLGALEIIEVVRASGLNLMIGG 343 (409)
Q Consensus 306 ~~~a~div~~k~~-----------~~G---i~~~~~i~~~A~~~gi~~~~~~ 343 (409)
+.| +|++.+-++ -+| ++...++++.|+++|++++..+
T Consensus 301 ~aG-ad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadG 351 (495)
T PTZ00314 301 DAG-ADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADG 351 (495)
T ss_pred HcC-CCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecC
Confidence 988 599865421 134 2334678889999999999944
|
|
| >cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases | Back alignment and domain information |
|---|
Probab=85.39 E-value=28 Score=32.02 Aligned_cols=115 Identities=19% Similarity=0.204 Sum_probs=81.2
Q ss_pred HHHHHHHhhC-CCcEEEEeCCCCCCHHHHHHHHHHHHhC-CCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCC
Q 015289 218 EVLRAIRAVH-PDSSFILDANEGYKPQEAVEVLEKLYEM-GVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESC 295 (409)
Q Consensus 218 ~~l~avr~~~-~~~~l~vDaN~~w~~~~A~~~~~~L~~~-~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~ 295 (409)
+.++.+++.. ..+.+-++ +.+.++.++.++.|.+. + ..+||=|+...-++..++|.+ .++++...- +
T Consensus 41 ~~~~~i~~~~~~~v~~qv~---~~~~e~~i~~a~~l~~~~~--~~~iKIP~T~~gl~ai~~L~~-----~gi~v~~T~-V 109 (211)
T cd00956 41 AVLKEICEIIDGPVSAQVV---STDAEGMVAEARKLASLGG--NVVVKIPVTEDGLKAIKKLSE-----EGIKTNVTA-I 109 (211)
T ss_pred HHHHHHHHhcCCCEEEEEE---eCCHHHHHHHHHHHHHhCC--CEEEEEcCcHhHHHHHHHHHH-----cCCceeeEE-e
Confidence 4566666653 33455555 46788888888888776 4 259999998744555555542 367776543 7
Q ss_pred CCHHHHHHHHHcCCCCEEEeCCCCC---c---HHHHHHHHHHHHHcCCc---EEEccC
Q 015289 296 RSLDDVKKIVKGNLADVINIKLAKV---G---VLGALEIIEVVRASGLN---LMIGGM 344 (409)
Q Consensus 296 ~~~~~~~~~i~~~a~div~~k~~~~---G---i~~~~~i~~~A~~~gi~---~~~~~~ 344 (409)
++..+....++.| ++++.|-+.++ | +.-..++.++++.+|++ ++.|..
T Consensus 110 ~s~~Qa~~Aa~AG-A~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r 166 (211)
T cd00956 110 FSAAQALLAAKAG-ATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKILAASIR 166 (211)
T ss_pred cCHHHHHHHHHcC-CCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEecccC
Confidence 9999999999988 59999988883 3 44567899999999988 555554
|
FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase. |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=85.35 E-value=21 Score=33.00 Aligned_cols=114 Identities=18% Similarity=0.247 Sum_probs=72.4
Q ss_pred HHHHHHcCCCeEEEecCCChhHHHHHHHHHHhh-C-CCcEEEEeCC------CCCCH---HHHHHHHHHHHhCCCCCcee
Q 015289 194 ASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-H-PDSSFILDAN------EGYKP---QEAVEVLEKLYEMGVTPVLF 262 (409)
Q Consensus 194 ~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~-~-~~~~l~vDaN------~~w~~---~~A~~~~~~L~~~~l~~~~i 262 (409)
++++.+.|...+ =+|..+-.|.+.+..+.+. + ..+.+.+|.. .+|.. ....++++.+++.+.. .++
T Consensus 87 ~~~~~~~Ga~~v--vlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~-~ii 163 (230)
T TIGR00007 87 VEKLLDLGVDRV--IIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLE-GII 163 (230)
T ss_pred HHHHHHcCCCEE--EEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCC-EEE
Confidence 455666788754 3554334566667666665 4 3466778865 23421 2335677778777654 223
Q ss_pred ------ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 263 ------EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 263 ------EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
+.-....|++.++++++ ..++||.++=-+.+.+|++++.+.| +|.+.+
T Consensus 164 ~~~~~~~g~~~g~~~~~i~~i~~----~~~ipvia~GGi~~~~di~~~~~~G-adgv~i 217 (230)
T TIGR00007 164 YTDISRDGTLSGPNFELTKELVK----AVNVPVIASGGVSSIDDLIALKKLG-VYGVIV 217 (230)
T ss_pred EEeecCCCCcCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHCC-CCEEEE
Confidence 22233346777777764 5789999999999999999988866 677654
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=85.04 E-value=15 Score=33.54 Aligned_cols=143 Identities=16% Similarity=0.296 Sum_probs=92.6
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCce
Q 015289 182 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261 (409)
Q Consensus 182 i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~ 261 (409)
+-..++++..+.++.+.+.|++.+.+-... ..-.+.++.+++.+|+ +.+=+..-.|.+++.+..+ .|.+ |
T Consensus 14 ir~~~~~~a~~~~~al~~gGi~~iEiT~~t--~~a~~~I~~l~~~~p~--~~vGAGTV~~~e~a~~a~~----aGA~--F 83 (196)
T PF01081_consen 14 IRGDDPEDAVPIAEALIEGGIRAIEITLRT--PNALEAIEALRKEFPD--LLVGAGTVLTAEQAEAAIA----AGAQ--F 83 (196)
T ss_dssp ETTSSGGGHHHHHHHHHHTT--EEEEETTS--TTHHHHHHHHHHHHTT--SEEEEES--SHHHHHHHHH----HT-S--E
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEecCC--ccHHHHHHHHHHHCCC--CeeEEEeccCHHHHHHHHH----cCCC--E
Confidence 334577888888999999999999998863 3446678888888887 5677888889988755544 4543 7
Q ss_pred eecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCC-cHHHHHHHHHHHHHcCCcEE
Q 015289 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 262 iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~-Gi~~~~~i~~~A~~~gi~~~ 340 (409)
+=-|.-..+ +-+.++ +.++|+.-| +.++.++..+++.| ++++.+=|... |....+|...-- --+++++
T Consensus 84 ivSP~~~~~---v~~~~~----~~~i~~iPG--~~TptEi~~A~~~G-~~~vK~FPA~~~GG~~~ik~l~~p-~p~~~~~ 152 (196)
T PF01081_consen 84 IVSPGFDPE---VIEYAR----EYGIPYIPG--VMTPTEIMQALEAG-ADIVKLFPAGALGGPSYIKALRGP-FPDLPFM 152 (196)
T ss_dssp EEESS--HH---HHHHHH----HHTSEEEEE--ESSHHHHHHHHHTT--SEEEETTTTTTTHHHHHHHHHTT-TTT-EEE
T ss_pred EECCCCCHH---HHHHHH----HcCCcccCC--cCCHHHHHHHHHCC-CCEEEEecchhcCcHHHHHHHhcc-CCCCeEE
Confidence 777864322 333332 458898874 78999999999988 59998888764 744444332211 2368888
Q ss_pred EccCC
Q 015289 341 IGGMV 345 (409)
Q Consensus 341 ~~~~~ 345 (409)
+.+-+
T Consensus 153 ptGGV 157 (196)
T PF01081_consen 153 PTGGV 157 (196)
T ss_dssp EBSS-
T ss_pred EcCCC
Confidence 86543
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=84.98 E-value=19 Score=34.10 Aligned_cols=111 Identities=14% Similarity=0.204 Sum_probs=73.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCceeecCCC---CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 015289 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVH---RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 314 (409)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~---~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~ 314 (409)
..|+.++.+++++.|.+.|+. .||=-++ ..+++.++++.+ ...+..+..- .-.+..++..+.+.+ +|.+.
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~--~iE~g~p~~~~~~~e~~~~l~~---~~~~~~~~~~-~r~~~~~v~~a~~~g-~~~i~ 87 (259)
T cd07939 15 VAFSREEKLAIARALDEAGVD--EIEVGIPAMGEEEREAIRAIVA---LGLPARLIVW-CRAVKEDIEAALRCG-VTAVH 87 (259)
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEEecCCCCHHHHHHHHHHHh---cCCCCEEEEe-ccCCHHHHHHHHhCC-cCEEE
Confidence 357899999999999999986 8998443 234455666653 2334555432 224677888888876 68776
Q ss_pred eCCCCC--------c------HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHH
Q 015289 315 IKLAKV--------G------VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAG 355 (409)
Q Consensus 315 ~k~~~~--------G------i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~ 355 (409)
+=.+.. | +....++++.|++.|+.+.++++..+........
T Consensus 88 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~ 142 (259)
T cd07939 88 ISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLI 142 (259)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHH
Confidence 632111 1 2345678999999999999888765543333433
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=84.92 E-value=53 Score=35.17 Aligned_cols=164 Identities=20% Similarity=0.287 Sum_probs=96.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCC--------hhHHHHHHHHHHhhCCCcEEEEe---CCC-CCC--HHH-HHHHH
Q 015289 185 VSPAEAAELASKYRKQGFTTLKLKVGKN--------LKEDIEVLRAIRAVHPDSSFILD---ANE-GYK--PQE-AVEVL 249 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~--------~~~d~~~l~avr~~~~~~~l~vD---aN~-~w~--~~~-A~~~~ 249 (409)
.+.++..+.+..+.+.||..+-+--|.. -+.+.++++.+|+..++..+..= .|. +|. +++ ...++
T Consensus 18 ~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v 97 (582)
T TIGR01108 18 MRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFV 97 (582)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHH
Confidence 3667888888888889999998852211 13578899999998777766432 232 342 334 34578
Q ss_pred HHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeC--CC---CCCHHHH----HHHHHcCCCCEEEeCCCCC
Q 015289 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD--ES---CRSLDDV----KKIVKGNLADVINIKLAKV 320 (409)
Q Consensus 250 ~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~d--Es---~~~~~~~----~~~i~~~a~div~~k~~~~ 320 (409)
++..+.++...-+-.++. |.+.+....+.++ ..+..+... .+ .++...+ +++.+.| +|.+.++=+-
T Consensus 98 ~~a~~~Gvd~irif~~ln--d~~n~~~~i~~ak-~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~G-ad~I~i~Dt~- 172 (582)
T TIGR01108 98 KKAVENGMDVFRIFDALN--DPRNLQAAIQAAK-KHGAHAQGTISYTTSPVHTLETYLDLAEELLEMG-VDSICIKDMA- 172 (582)
T ss_pred HHHHHCCCCEEEEEEecC--cHHHHHHHHHHHH-HcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC-CCEEEECCCC-
Confidence 888888876455666665 4444544333333 234444432 22 1344433 3445556 6887776554
Q ss_pred c---HHHHHHHH-HHHHHcCCcEEEccCCchHHHHHH
Q 015289 321 G---VLGALEII-EVVRASGLNLMIGGMVETRLAMGF 353 (409)
Q Consensus 321 G---i~~~~~i~-~~A~~~gi~~~~~~~~es~i~~~~ 353 (409)
| ...+.++. .+-+..++++.+|+...++++.+.
T Consensus 173 G~~~P~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~An 209 (582)
T TIGR01108 173 GILTPKAAYELVSALKKRFGLPVHLHSHATTGMAEMA 209 (582)
T ss_pred CCcCHHHHHHHHHHHHHhCCCceEEEecCCCCcHHHH
Confidence 4 33455544 444566888888886555554433
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=84.91 E-value=9.3 Score=36.96 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=47.7
Q ss_pred ccCCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 283 DKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 283 ~~~~ipIa~dE-s~~~~~~~~~~i~~~a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
++.++||++-= ...+.+.+.++++.| ++-|.+|.+..- +..++++.++|+++|+.+-
T Consensus 71 ~~~~VPValHLDH~~~~e~i~~ai~~G-ftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVE 132 (284)
T PRK12737 71 RKYNIPLALHLDHHEDLDDIKKKVRAG-IRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVE 132 (284)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 46789999764 466788999999997 789999999874 5668999999999999874
|
|
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=84.80 E-value=5.2 Score=36.32 Aligned_cols=96 Identities=15% Similarity=0.142 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCCceeecC--CC-CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHH--HHHHHHHcCCCCEE
Q 015289 239 GYKPQEAVEVLEKLYEMGVTPVLFEQP--VH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLD--DVKKIVKGNLADVI 313 (409)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~iEeP--~~-~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~--~~~~~i~~~a~div 313 (409)
..+.++|.++++.+ +.++. |||-. +. +.-.+.++.+++. ..+..+..|=.+.++. +++.+.+.| +|++
T Consensus 8 ~~~~~~a~~~~~~l-~~~v~--~iev~~~l~~~~g~~~i~~l~~~---~~~~~i~~d~k~~d~~~~~~~~~~~~G-ad~i 80 (206)
T TIGR03128 8 LLDIEEALELAEKV-ADYVD--IIEIGTPLIKNEGIEAVKEMKEA---FPDRKVLADLKTMDAGEYEAEQAFAAG-ADIV 80 (206)
T ss_pred CCCHHHHHHHHHHc-ccCee--EEEeCCHHHHHhCHHHHHHHHHH---CCCCEEEEEEeeccchHHHHHHHHHcC-CCEE
Confidence 36789999999999 66764 99995 32 2234555555531 2356777776555654 677888877 5888
Q ss_pred EeCCCCCcHHHHHHHHHHHHHcCCcEEEc
Q 015289 314 NIKLAKVGVLGALEIIEVVRASGLNLMIG 342 (409)
Q Consensus 314 ~~k~~~~Gi~~~~~i~~~A~~~gi~~~~~ 342 (409)
.+.... +.....++.+.|+++|+++++.
T Consensus 81 ~vh~~~-~~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 81 TVLGVA-DDATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred EEeccC-CHHHHHHHHHHHHHcCCEEEEE
Confidence 766543 2223467888999999999975
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=84.49 E-value=39 Score=39.27 Aligned_cols=167 Identities=17% Similarity=0.235 Sum_probs=101.8
Q ss_pred CHHHHHHHHHHHHHc--CCCeEEEecCCC--------hhHHHHHHHHHHhhCCCcEEEEeCCC----CCC--HH-HHHHH
Q 015289 186 SPAEAAELASKYRKQ--GFTTLKLKVGKN--------LKEDIEVLRAIRAVHPDSSFILDANE----GYK--PQ-EAVEV 248 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~--Gf~~~KiKvG~~--------~~~d~~~l~avr~~~~~~~l~vDaN~----~w~--~~-~A~~~ 248 (409)
+.+++...+..+.+. ||..+.+--|.. -+.+.++++.+|+..|+..|.+=..+ +|+ ++ -...+
T Consensus 553 ~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~~ 632 (1146)
T PRK12999 553 RTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVVRAF 632 (1146)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecccccccccCCCchHHHHH
Confidence 346777778888888 998888765521 14678999999999887765433322 454 23 33447
Q ss_pred HHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCC----CeEEeC-------CCCCCHHHH----HHHHHcCCCCEE
Q 015289 249 LEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG----VSVAAD-------ESCRSLDDV----KKIVKGNLADVI 313 (409)
Q Consensus 249 ~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~----ipIa~d-------Es~~~~~~~----~~~i~~~a~div 313 (409)
++...+.++.+.-+=+++. |.+.+....+..++. + +-|+.- ...+++.-+ +++.+.| +|.+
T Consensus 633 i~~a~~~Gid~~rifd~ln--d~~~~~~~i~~vk~~-g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~G-a~~i 708 (1146)
T PRK12999 633 VREAAAAGIDVFRIFDSLN--WVENMRVAIDAVRET-GKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAG-AHIL 708 (1146)
T ss_pred HHHHHHcCCCEEEEeccCC--hHHHHHHHHHHHHHc-CCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcC-CCEE
Confidence 8888888887666777765 466666554444332 4 333322 223455433 3445555 6888
Q ss_pred EeCCCCCc-H--HHHHHHHH-HHHHcCCcEEEccCCchHHHHHHHHHHHc
Q 015289 314 NIKLAKVG-V--LGALEIIE-VVRASGLNLMIGGMVETRLAMGFAGHLSA 359 (409)
Q Consensus 314 ~~k~~~~G-i--~~~~~i~~-~A~~~gi~~~~~~~~es~i~~~~~~hlaa 359 (409)
.++=+- | + ..+.+++. +-++.++++.+|+...++++ .+..++|
T Consensus 709 ~ikDt~-G~l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~Gla--~an~laA 755 (1146)
T PRK12999 709 AIKDMA-GLLKPAAAYELVSALKEEVDLPIHLHTHDTSGNG--LATYLAA 755 (1146)
T ss_pred EECCcc-CCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCchH--HHHHHHH
Confidence 887553 5 3 34445443 44556899999886555544 4444444
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=84.37 E-value=33 Score=35.49 Aligned_cols=118 Identities=19% Similarity=0.243 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHcCCCeEEEecCC-ChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCcee---ec
Q 015289 189 EAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF---EQ 264 (409)
Q Consensus 189 ~~~~~~~~~~~~Gf~~~KiKvG~-~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i---Ee 264 (409)
+..++++.+++.|...+-+.... +-..-.+.++.+|+.+|++.+++ ....|.++|....+ .|.. +| =-
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~--G~v~t~~~a~~l~~----aGad--~i~vg~g 295 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIA--GNVATAEQAKALID----AGAD--GLRVGIG 295 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEE--EeCCCHHHHHHHHH----hCCC--EEEECCC
Confidence 34466777888899999888742 22344566888888888888777 44567777655544 4443 33 11
Q ss_pred C-----------CCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 265 P-----------VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 265 P-----------~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k 316 (409)
| +..-++..+.++++.+ ++.++||.+|--+.+..|+.++++.|+ |.+++-
T Consensus 296 ~G~~~~t~~~~~~g~p~~~~i~~~~~~~-~~~~vpviadGGi~~~~di~kAla~GA-~~V~~G 356 (450)
T TIGR01302 296 PGSICTTRIVAGVGVPQITAVYDVAEYA-AQSGIPVIADGGIRYSGDIVKALAAGA-DAVMLG 356 (450)
T ss_pred CCcCCccceecCCCccHHHHHHHHHHHH-hhcCCeEEEeCCCCCHHHHHHHHHcCC-CEEEEC
Confidence 2 1112344555554432 246899999999999999999999985 887763
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=83.93 E-value=18 Score=36.54 Aligned_cols=115 Identities=19% Similarity=0.302 Sum_probs=73.4
Q ss_pred eCCCC----CCHHHHHHHHHHHHhCCCCCceeec--CCC-CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHc
Q 015289 235 DANEG----YKPQEAVEVLEKLYEMGVTPVLFEQ--PVH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 307 (409)
Q Consensus 235 DaN~~----w~~~~A~~~~~~L~~~~l~~~~iEe--P~~-~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~ 307 (409)
|.+|+ |+.++-+++++.|.+.|+. .||= |.. +++++.++++.+ ......++.- +-....++..+++.
T Consensus 14 DG~Q~~~~~~s~e~k~~ia~~L~~~GV~--~IE~G~p~~~~~~~e~i~~i~~---~~~~~~i~~~-~r~~~~di~~a~~~ 87 (378)
T PRK11858 14 DGEQTPGVVFTNEEKLAIARMLDEIGVD--QIEAGFPAVSEDEKEAIKAIAK---LGLNASILAL-NRAVKSDIDASIDC 87 (378)
T ss_pred ccCcCCCCCCCHHHHHHHHHHHHHhCCC--EEEEeCCCcChHHHHHHHHHHh---cCCCeEEEEE-cccCHHHHHHHHhC
Confidence 56664 7899999999999999986 8996 533 334566666653 1223334332 33357788888887
Q ss_pred CCCCEEEeCCCC--------Cc------HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHH
Q 015289 308 NLADVINIKLAK--------VG------VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 356 (409)
Q Consensus 308 ~a~div~~k~~~--------~G------i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~h 356 (409)
+ ++.+.+=... .| +....+.+++|++.|+.+.++++..+.........
T Consensus 88 g-~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~ 149 (378)
T PRK11858 88 G-VDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIE 149 (378)
T ss_pred C-cCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHH
Confidence 6 5776552221 11 23456689999999999998876544333333333
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.91 E-value=41 Score=32.15 Aligned_cols=92 Identities=22% Similarity=0.308 Sum_probs=59.5
Q ss_pred eeeeecCCCHHHHHHHHHHHHHcCCCeEEEecC----------------------CChhHHHHHHHHHHhhCCC--cEEE
Q 015289 178 TDITIPIVSPAEAAELASKYRKQGFTTLKLKVG----------------------KNLKEDIEVLRAIRAVHPD--SSFI 233 (409)
Q Consensus 178 ~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG----------------------~~~~~d~~~l~avr~~~~~--~~l~ 233 (409)
.|.+.+.-+++...+.++.+.+.|-..+.+-+- -.++.-.+.++.+|+.+.+ +.||
T Consensus 21 ~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm 100 (265)
T COG0159 21 PYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLM 100 (265)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 355666666777777777777777777776552 1234566777777776655 3455
Q ss_pred EeCCCCC------------------------CHHHHHHHHHHHHhCCCCCceeecCCCCC
Q 015289 234 LDANEGY------------------------KPQEAVEVLEKLYEMGVTPVLFEQPVHRD 269 (409)
Q Consensus 234 vDaN~~w------------------------~~~~A~~~~~~L~~~~l~~~~iEeP~~~~ 269 (409)
.=.|--| -++++.++.+..+++++.+.++=-|..++
T Consensus 101 ~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~ 160 (265)
T COG0159 101 TYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPD 160 (265)
T ss_pred EeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCH
Confidence 5555433 35666677777788887766777777654
|
|
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=83.67 E-value=20 Score=35.92 Aligned_cols=114 Identities=17% Similarity=0.272 Sum_probs=73.1
Q ss_pred eCCCC----CCHHHHHHHHHHHHhCCCCCceeec--CCCC-CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHc
Q 015289 235 DANEG----YKPQEAVEVLEKLYEMGVTPVLFEQ--PVHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 307 (409)
Q Consensus 235 DaN~~----w~~~~A~~~~~~L~~~~l~~~~iEe--P~~~-~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~ 307 (409)
|.+|+ |+.++-+++++.|.+.|+. .||= |... .+++.++++.+. ..+..++.= .-.+..+++.+++.
T Consensus 11 DG~Q~~~~~~s~~~k~~ia~~L~~~Gv~--~IEvG~p~~~~~~~e~i~~i~~~---~~~~~i~~~-~r~~~~di~~a~~~ 84 (365)
T TIGR02660 11 DGEQAPGVAFTAAEKLAIARALDEAGVD--ELEVGIPAMGEEERAVIRAIVAL---GLPARLMAW-CRARDADIEAAARC 84 (365)
T ss_pred CcCcCCCCCCCHHHHHHHHHHHHHcCCC--EEEEeCCCCCHHHHHHHHHHHHc---CCCcEEEEE-cCCCHHHHHHHHcC
Confidence 66664 7899999999999999986 9998 4332 345666666541 223344321 22467888888887
Q ss_pred CCCCEEEeCCCC--------Cc------HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHH
Q 015289 308 NLADVINIKLAK--------VG------VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAG 355 (409)
Q Consensus 308 ~a~div~~k~~~--------~G------i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~ 355 (409)
| +|.+.+=... .| +....+++++|+++|+.+.++++..+.......+
T Consensus 85 g-~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~ 145 (365)
T TIGR02660 85 G-VDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLV 145 (365)
T ss_pred C-cCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHH
Confidence 6 5666543322 11 2234578999999999999887654433333333
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=83.66 E-value=25 Score=32.89 Aligned_cols=115 Identities=15% Similarity=0.222 Sum_probs=76.4
Q ss_pred HHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhC-CCcEEEEeCCC------CCCH---HHHHHHHHHHHhCCCCCce
Q 015289 192 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-PDSSFILDANE------GYKP---QEAVEVLEKLYEMGVTPVL 261 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~-~~~~l~vDaN~------~w~~---~~A~~~~~~L~~~~l~~~~ 261 (409)
+.++++.+.|...+ =+|.-.-+|.+.++.+.+.+ ..+-+.+|... +|.. -+..++++.+++.++. ..
T Consensus 89 e~v~~~l~~Ga~kv--vigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~-~i 165 (234)
T PRK13587 89 SQIMDYFAAGINYC--IVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLG-GI 165 (234)
T ss_pred HHHHHHHHCCCCEE--EECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCC-EE
Confidence 34566677777654 56654456788888888885 45778899743 3532 1235677778877653 22
Q ss_pred eecCCCC------CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 015289 262 FEQPVHR------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 314 (409)
Q Consensus 262 iEeP~~~------~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~ 314 (409)
|=--+.. .|++.++++.+ .+++||...=-+.+.+|+.++.+.| ++.+.
T Consensus 166 i~tdi~~dGt~~G~~~~li~~l~~----~~~ipvi~~GGi~s~edi~~l~~~G-~~~vi 219 (234)
T PRK13587 166 IYTDIAKDGKMSGPNFELTGQLVK----ATTIPVIASGGIRHQQDIQRLASLN-VHAAI 219 (234)
T ss_pred EEecccCcCCCCccCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcC-CCEEE
Confidence 3222322 36766777753 5689999998999999999999876 45553
|
|
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=83.41 E-value=16 Score=35.57 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=44.5
Q ss_pred CCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 286 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 286 ~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
++||++-=-..+.+.+.++++.| ++.+|+|-+..- +..++++.++|+++|+.+.
T Consensus 77 ~vPV~lHLDH~~~~~i~~ai~~G-ftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE 134 (293)
T PRK07315 77 TVPVAIHLDHGHYEDALECIEVG-YTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVE 134 (293)
T ss_pred CCcEEEECCCCCHHHHHHHHHcC-CCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 67999764444888899999877 799999998875 4568899999999999984
|
|
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=83.39 E-value=27 Score=35.61 Aligned_cols=153 Identities=13% Similarity=0.153 Sum_probs=90.1
Q ss_pred eeeeeecCC-CHHHHHHHHHHHHHcCCCeEEEecCC---------------ChhHHHHHHHHHHhhCCCcEEEEeCCCCC
Q 015289 177 TTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVGK---------------NLKEDIEVLRAIRAVHPDSSFILDANEGY 240 (409)
Q Consensus 177 ~~~~~i~~~-~~~~~~~~~~~~~~~Gf~~~KiKvG~---------------~~~~d~~~l~avr~~~~~~~l~vDaN~~w 240 (409)
|+..++... +++++.+.++.+.+.|+..|-+.++- +++.-.+.++++++.. ++.+.+=-.-.+
T Consensus 101 p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~-~~Pv~vKl~p~~ 179 (420)
T PRK08318 101 ALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS-RLPVIVKLTPNI 179 (420)
T ss_pred eEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhcc-CCcEEEEcCCCc
Confidence 444555555 68888888888877899999988761 2223344556666642 345555543322
Q ss_pred CHHHHHHHHHHHHhCCCCCce------------ee----cC-CCCC--------------CHHHHHHhHHHhhccC---C
Q 015289 241 KPQEAVEVLEKLYEMGVTPVL------------FE----QP-VHRD--------------DWEGLGHVSHIAKDKF---G 286 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~------------iE----eP-~~~~--------------d~~~~~~l~~~~~~~~---~ 286 (409)
.+..++++.+++.|+.-.- +| .| ++.. .++..++++ +.. +
T Consensus 180 --~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~----~~~~~~~ 253 (420)
T PRK08318 180 --TDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIA----RDPETRG 253 (420)
T ss_pred --ccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHH----hccccCC
Confidence 2345677778777643111 12 13 2110 133333443 333 7
Q ss_pred CeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCC--c--HH-HH-HHHHHHHHHcCC
Q 015289 287 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKV--G--VL-GA-LEIIEVVRASGL 337 (409)
Q Consensus 287 ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~--G--i~-~~-~~i~~~A~~~gi 337 (409)
+||.+-=-+.+.+|+.+++..| +|.||+=-+-. | +. .. ..+.++.+++|+
T Consensus 254 ipIig~GGI~s~~da~e~i~aG-A~~Vqi~ta~~~~gp~ii~~I~~~L~~~l~~~g~ 309 (420)
T PRK08318 254 LPISGIGGIETWRDAAEFILLG-AGTVQVCTAAMQYGFRIVEDMISGLSHYMDEKGF 309 (420)
T ss_pred CCEEeecCcCCHHHHHHHHHhC-CChheeeeeeccCCchhHHHHHHHHHHHHHHcCc
Confidence 9999988899999999999987 59988754432 4 21 21 234456666764
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=83.12 E-value=43 Score=31.77 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHhCCCCCceeecCCCC
Q 015289 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHR 268 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~ 268 (409)
..++..++.+.++++++.+.++=-|..+
T Consensus 116 P~ee~~~~~~~~~~~gl~~I~lv~Ptt~ 143 (250)
T PLN02591 116 PLEETEALRAEAAKNGIELVLLTTPTTP 143 (250)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 4567777777778777765555555543
|
|
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=82.96 E-value=19 Score=34.83 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=45.6
Q ss_pred CCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 286 GVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 286 ~ipIa~d-Es~~~~~~~~~~i~~~a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
++||++- ....+++...++++.| ++-|.+|-+..= +..++++.++|+++|+.+-
T Consensus 77 ~VPV~lHLDHg~~~e~i~~ai~~G-ftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VE 135 (285)
T PRK07709 77 TVPVAIHLDHGSSFEKCKEAIDAG-FTSVMIDASHHPFEENVETTKKVVEYAHARNVSVE 135 (285)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 3899976 3466889999999998 699999999874 5668999999999999884
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=82.94 E-value=43 Score=34.89 Aligned_cols=117 Identities=18% Similarity=0.256 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceee----
Q 015289 189 EAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE---- 263 (409)
Q Consensus 189 ~~~~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE---- 263 (409)
+..+.++.++++|.+.+=+... .....-++.++.||+.+|++.+++| ..-|.+++.... +.|.. .|-
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g--~~~t~~~~~~l~----~~G~d--~i~vg~g 296 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAG--NVVSAEGVRDLL----EAGAN--IIKVGVG 296 (475)
T ss_pred cHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEe--ccCCHHHHHHHH----HhCCC--EEEECCc
Confidence 4456778888899999888775 2335566778899988999999983 245666665444 34432 332
Q ss_pred -------c---CCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 264 -------Q---PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 264 -------e---P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
. .+..-......++++.++ ..++||.+|--+.+..|+.+.+..|+ |.+.+
T Consensus 297 ~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~-~~~~~viadGgi~~~~di~kala~GA-~~vm~ 356 (475)
T TIGR01303 297 PGAMCTTRMMTGVGRPQFSAVLECAAEAR-KLGGHVWADGGVRHPRDVALALAAGA-SNVMV 356 (475)
T ss_pred CCccccCccccCCCCchHHHHHHHHHHHH-HcCCcEEEeCCCCCHHHHHHHHHcCC-CEEee
Confidence 0 111112333334433333 34899999999999999999999885 66654
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=81.77 E-value=29 Score=33.59 Aligned_cols=115 Identities=22% Similarity=0.383 Sum_probs=74.6
Q ss_pred HHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhh-C-CCcE----E----------EEeCCC-CC-CHHHHHHHHHHH
Q 015289 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-H-PDSS----F----------ILDANE-GY-KPQEAVEVLEKL 252 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~-~-~~~~----l----------~vDaN~-~w-~~~~A~~~~~~L 252 (409)
+.+.++++.||+.+=+... .++++.++..+.+.+. . -++. | ..|.+. .| ++++|.+|+++.
T Consensus 88 e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~T 167 (284)
T PRK12737 88 DDIKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERT 167 (284)
T ss_pred HHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHh
Confidence 4456778889999998876 4677777777666552 1 1111 1 112222 26 599999999875
Q ss_pred Hh----------CCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 253 YE----------MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 253 ~~----------~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~-dEs~~~~~~~~~~i~~~a~div~~k 316 (409)
.- .|+ |-.+| .-|++-++++++ .+++|+.+ |=|=...++++++++.|. .=+|+.
T Consensus 168 gvD~LAvaiGt~HG~---y~~~p--~Ld~~~L~~I~~----~~~iPLVlHGgSG~~~e~~~kai~~Gi-~KiNi~ 232 (284)
T PRK12737 168 GIDSLAVAIGTAHGL---YKGEP--KLDFERLAEIRE----KVSIPLVLHGASGVPDEDVKKAISLGI-CKVNVA 232 (284)
T ss_pred CCCEEeeccCccccc---cCCCC--cCCHHHHHHHHH----HhCCCEEEeCCCCCCHHHHHHHHHCCC-eEEEeC
Confidence 31 232 44555 457888888875 56888885 456666778999999884 334554
|
|
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=81.72 E-value=22 Score=32.58 Aligned_cols=95 Identities=21% Similarity=0.269 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHhCCCCCceeecCCCCCCH-HHHHHhHHHhhccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCC
Q 015289 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW-EGLGHVSHIAKDKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLA 318 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~-~~~~~l~~~~~~~~~ipIa~d-Es~~~~~~~~~~i~~~a~div~~k~~ 318 (409)
+.+++.+.++.+-+.|+. .+|=.+...+. +.++.+++ +.+.++..| =++.+.+++..+++.|+ |++..- .
T Consensus 20 ~~~~~~~~~~a~~~gGi~--~iEvt~~~~~~~~~i~~l~~----~~~~~~~iGaGTV~~~~~~~~a~~aGA-~fivsp-~ 91 (206)
T PRK09140 20 TPDEALAHVGALIEAGFR--AIEIPLNSPDPFDSIAALVK----ALGDRALIGAGTVLSPEQVDRLADAGG-RLIVTP-N 91 (206)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCCccHHHHHHHHHH----HcCCCcEEeEEecCCHHHHHHHHHcCC-CEEECC-C
Confidence 789999999999999986 89988775543 33455543 444333333 36889999999999985 877541 1
Q ss_pred CCcHHHHHHHHHHHHHcCCcEEEccCCchH
Q 015289 319 KVGVLGALEIIEVVRASGLNLMIGGMVETR 348 (409)
Q Consensus 319 ~~Gi~~~~~i~~~A~~~gi~~~~~~~~es~ 348 (409)
.. ..+...++..|+.+.+|++..+.
T Consensus 92 ---~~--~~v~~~~~~~~~~~~~G~~t~~E 116 (206)
T PRK09140 92 ---TD--PEVIRRAVALGMVVMPGVATPTE 116 (206)
T ss_pred ---CC--HHHHHHHHHCCCcEEcccCCHHH
Confidence 11 46677888999999999875444
|
|
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=81.61 E-value=19 Score=34.84 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=47.4
Q ss_pred ccCCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 283 DKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 283 ~~~~ipIa~dE-s~~~~~~~~~~i~~~a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
++..+||++-= ...+++.++++++.| ++.|++|-+..- +..++++..+|+.+|+.+.
T Consensus 65 ~~~~vPV~lHLDHg~~~e~i~~ai~~G-f~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE 126 (283)
T PRK08185 65 KRSPVPFVIHLDHGATIEDVMRAIRCG-FTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVE 126 (283)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 46789999763 456889999999987 699999988874 5568899999999999984
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=81.60 E-value=43 Score=30.72 Aligned_cols=109 Identities=17% Similarity=0.249 Sum_probs=71.4
Q ss_pred HHHHHHHHcCCCeEEEecCC--Chh--HHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCcee--ec-
Q 015289 192 ELASKYRKQGFTTLKLKVGK--NLK--EDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF--EQ- 264 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG~--~~~--~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i--Ee- 264 (409)
++++.+.+.|-..+=+.... .+. ...+.++++++.+ ++.++++.+ +.+++ ..+.+.+.. |+ +-
T Consensus 83 ~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~---t~~ea----~~a~~~G~d--~i~~~~~ 152 (219)
T cd04729 83 EEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADIS---TLEEA----LNAAKLGFD--IIGTTLS 152 (219)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECC---CHHHH----HHHHHcCCC--EEEccCc
Confidence 35666777888766654331 122 4556777888878 788888664 56665 334455653 44 20
Q ss_pred ---C----CCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 265 ---P----VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 265 ---P----~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
+ ....+++.++++++ ..++||..+=-+.+.+++.++++.| +|.+.+
T Consensus 153 g~t~~~~~~~~~~~~~l~~i~~----~~~ipvia~GGI~~~~~~~~~l~~G-adgV~v 205 (219)
T cd04729 153 GYTEETAKTEDPDFELLKELRK----ALGIPVIAEGRINSPEQAAKALELG-ADAVVV 205 (219)
T ss_pred cccccccCCCCCCHHHHHHHHH----hcCCCEEEeCCCCCHHHHHHHHHCC-CCEEEE
Confidence 0 11224555666653 4589999988899999999999988 788765
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=81.53 E-value=30 Score=33.51 Aligned_cols=115 Identities=17% Similarity=0.307 Sum_probs=74.4
Q ss_pred HHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhh-C-CCcE----E----------EEeCC-CCC-CHHHHHHHHHHH
Q 015289 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-H-PDSS----F----------ILDAN-EGY-KPQEAVEVLEKL 252 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~-~-~~~~----l----------~vDaN-~~w-~~~~A~~~~~~L 252 (409)
+.+.++++.||+.+=+... .++++.++..+.+.+. . -++. | ..+.+ ..| ++++|.+|+++.
T Consensus 88 e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~T 167 (284)
T PRK09195 88 DDIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEAT 167 (284)
T ss_pred HHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHH
Confidence 4466777889999999876 4677788777766652 1 1111 1 11111 225 599999999864
Q ss_pred H----------hCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 253 Y----------EMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 253 ~----------~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~d-Es~~~~~~~~~~i~~~a~div~~k 316 (409)
. -.|+ |-.+| .-|++-++++++ .+++|+.+- =|=...++++++++.|.. =+|+.
T Consensus 168 gvD~LAvaiGt~HG~---y~~~p--~Ld~~~L~~I~~----~~~vPLVLHGgSG~~~e~~~~ai~~Gi~-KiNi~ 232 (284)
T PRK09195 168 GIDSLAVAIGTAHGM---YKGEP--KLDFDRLENIRQ----WVNIPLVLHGASGLPTKDIQQTIKLGIC-KVNVA 232 (284)
T ss_pred CcCEEeeccCccccc---cCCCC--cCCHHHHHHHHH----HhCCCeEEecCCCCCHHHHHHHHHcCCe-EEEeC
Confidence 3 1232 44555 458888888875 568998854 555666789999998853 34553
|
|
| >TIGR00167 cbbA ketose-bisphosphate aldolases | Back alignment and domain information |
|---|
Probab=81.42 E-value=27 Score=33.85 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=67.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCceeecCCCC----CCHHHHHHhHHHhhccC--CCeEEeC-CCCCCHHHHHHHHHcC
Q 015289 236 ANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR----DDWEGLGHVSHIAKDKF--GVSVAAD-ESCRSLDDVKKIVKGN 308 (409)
Q Consensus 236 aN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~----~d~~~~~~l~~~~~~~~--~ipIa~d-Es~~~~~~~~~~i~~~ 308 (409)
|-..++.+.+..+++..++.+- |..|+=.-.. ..++.+....+...++. .+||++- ....+.+.+.+.++.|
T Consensus 22 AfN~~n~e~~~avi~AAee~~s-PvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~G 100 (288)
T TIGR00167 22 AFNINNLETINAVLEAAAEEKS-PVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVALHLDHGASEEDCAQAVKAG 100 (288)
T ss_pred EEEECCHHHHHHHHHHHHHHCC-CEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEEECCCCCCHHHHHHHHHcC
Confidence 3344566666666666666553 3344311110 11222333322223355 7899976 4567889999999987
Q ss_pred CCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 309 LADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 309 a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
++-+.+|-+..= +..++++.++|+.+|+.+-
T Consensus 101 -ftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VE 135 (288)
T TIGR00167 101 -FSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVE 135 (288)
T ss_pred -CCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 799999999864 5568999999999999874
|
fructose-bisphosphate and tagatose-bisphosphate aldolase. |
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=81.37 E-value=17 Score=35.28 Aligned_cols=53 Identities=15% Similarity=0.279 Sum_probs=45.1
Q ss_pred CeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 287 VSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 287 ipIa~d-Es~~~~~~~~~~i~~~a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
+||++- ....+++.+.++++.| ++-+.+|-+..- +..++++.++|+++|+.+-
T Consensus 78 vPV~lHLDHg~~~e~i~~ai~~G-ftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VE 135 (286)
T PRK08610 78 IPVAIHLDHGSSFEKCKEAIDAG-FTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVE 135 (286)
T ss_pred CCEEEECCCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 899976 3566889999999997 699999999874 5668999999999999874
|
|
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=81.31 E-value=17 Score=34.27 Aligned_cols=131 Identities=14% Similarity=0.149 Sum_probs=88.0
Q ss_pred eeeeeee--cCCC-HHHHHHHHHHHHHcCCCeEEEe---cC------CChhHHHHHHHHHHhh--CCCcEE--EEeCCC-
Q 015289 176 ITTDITI--PIVS-PAEAAELASKYRKQGFTTLKLK---VG------KNLKEDIEVLRAIRAV--HPDSSF--ILDANE- 238 (409)
Q Consensus 176 i~~~~~i--~~~~-~~~~~~~~~~~~~~Gf~~~KiK---vG------~~~~~d~~~l~avr~~--~~~~~l--~vDaN~- 238 (409)
+|+...+ |..+ +.++.+-++++.+.|.-.+-|. .| .+.++-+++|++++++ .+++-| |.|+-.
T Consensus 70 iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~ 149 (238)
T PF13714_consen 70 IPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLR 149 (238)
T ss_dssp SEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCH
T ss_pred CcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEecccccc
Confidence 4444332 4445 8899999999999999888763 33 2556778899999986 356544 678854
Q ss_pred -CCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 239 -GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 239 -~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
....++|++.++...+.|....|+|-+.. .+.++++.+ +.+.|+..-.. .+..++.++.+.| +..+..
T Consensus 150 ~~~~~deaI~R~~aY~eAGAD~ifi~~~~~---~~~i~~~~~----~~~~Pl~v~~~-~~~~~~~eL~~lG-v~~v~~ 218 (238)
T PF13714_consen 150 AEEGLDEAIERAKAYAEAGADMIFIPGLQS---EEEIERIVK----AVDGPLNVNPG-PGTLSAEELAELG-VKRVSY 218 (238)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SEEEETTSSS---HHHHHHHHH----HHSSEEEEETT-SSSS-HHHHHHTT-ESEEEE
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCC---HHHHHHHHH----hcCCCEEEEcC-CCCCCHHHHHHCC-CcEEEE
Confidence 66789999999999999887678888754 444677765 45788887653 3235566677777 455433
|
... |
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=81.10 E-value=36 Score=30.84 Aligned_cols=121 Identities=17% Similarity=0.192 Sum_probs=72.1
Q ss_pred HHHHHHHHcCCCeEEEecC--CChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhC---CCCCceeecCC
Q 015289 192 ELASKYRKQGFTTLKLKVG--KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEM---GVTPVLFEQPV 266 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG--~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~---~l~~~~iEeP~ 266 (409)
++++.+.+.|-..+=+..- ..+..-.+.++.+|+.+ .-+|.|+. |.++++...+.=-++ -+. -|-++--
T Consensus 55 ~ev~~l~~aGadIIAlDaT~R~Rp~~l~~li~~i~~~~--~l~MADis---t~ee~~~A~~~G~D~I~TTLs-GYT~~t~ 128 (192)
T PF04131_consen 55 KEVDALAEAGADIIALDATDRPRPETLEELIREIKEKY--QLVMADIS---TLEEAINAAELGFDIIGTTLS-GYTPYTK 128 (192)
T ss_dssp HHHHHHHHCT-SEEEEE-SSSS-SS-HHHHHHHHHHCT--SEEEEE-S---SHHHHHHHHHTT-SEEE-TTT-TSSTTST
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCcCHHHHHHHHHHhC--cEEeeecC---CHHHHHHHHHcCCCEEEcccc-cCCCCCC
Confidence 4566677889998888765 22345566788999988 89999984 577775543321110 000 1333333
Q ss_pred C-CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc--HHHHHHHH
Q 015289 267 H-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG--VLGALEII 329 (409)
Q Consensus 267 ~-~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G--i~~~~~i~ 329 (409)
. .-|++-+++|.+ .++||.+.=.++++++..++++.|+.-++ +| +|+-..+.
T Consensus 129 ~~~pD~~lv~~l~~-----~~~pvIaEGri~tpe~a~~al~~GA~aVV------VGsAITrP~~It 183 (192)
T PF04131_consen 129 GDGPDFELVRELVQ-----ADVPVIAEGRIHTPEQAAKALELGAHAVV------VGSAITRPQEIT 183 (192)
T ss_dssp TSSHHHHHHHHHHH-----TTSEEEEESS--SHHHHHHHHHTT-SEEE------E-HHHH-HHHHH
T ss_pred CCCCCHHHHHHHHh-----CCCcEeecCCCCCHHHHHHHHhcCCeEEE------ECcccCCHHHHH
Confidence 2 235666666653 38999888899999999999999975543 36 77665543
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=81.06 E-value=39 Score=32.64 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=46.4
Q ss_pred ccCCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcE
Q 015289 283 DKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNL 339 (409)
Q Consensus 283 ~~~~ipIa~dE-s~~~~~~~~~~i~~~a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~ 339 (409)
++.++||++-= ...+.+.+.++++.| ++-|.+|-+..= +..++++.++|+.+|+.+
T Consensus 71 ~~~~vPV~lHLDH~~~~e~i~~Ai~~G-ftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~V 131 (283)
T PRK07998 71 DKMDVPVSLHLDHGKTFEDVKQAVRAG-FTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPV 131 (283)
T ss_pred HHCCCCEEEECcCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 46789999653 456888999999987 699999998864 556899999999999987
|
|
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=80.95 E-value=32 Score=33.23 Aligned_cols=115 Identities=18% Similarity=0.314 Sum_probs=74.1
Q ss_pred HHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhh-C-CCcE----E----------EEeCC-CCC-CHHHHHHHHHHH
Q 015289 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-H-PDSS----F----------ILDAN-EGY-KPQEAVEVLEKL 252 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~-~-~~~~----l----------~vDaN-~~w-~~~~A~~~~~~L 252 (409)
+.+.++.+.||+.+=+... .++++.++..+.+.+. . -++. | ..+.+ ..| ++++|.+|+++.
T Consensus 86 e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~T 165 (282)
T TIGR01858 86 DDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEAT 165 (282)
T ss_pred HHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHH
Confidence 3456677889999999876 4677888877776652 1 1111 1 11111 225 489999998864
Q ss_pred Hh----------CCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 253 YE----------MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 253 ~~----------~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~d-Es~~~~~~~~~~i~~~a~div~~k 316 (409)
.- .|+ |-.+| .-|++-++++++ .+++|+.+- =|=...++++++++.|.. =+|+.
T Consensus 166 gvD~LAvaiGt~HG~---yk~~p--~Ldf~~L~~I~~----~~~iPLVlHGgSG~~~e~~~~ai~~Gi~-KiNi~ 230 (282)
T TIGR01858 166 GVDSLAVAIGTAHGL---YKKTP--KLDFDRLAEIRE----VVDVPLVLHGASDVPDEDVRRTIELGIC-KVNVA 230 (282)
T ss_pred CcCEEecccCccccC---cCCCC--ccCHHHHHHHHH----HhCCCeEEecCCCCCHHHHHHHHHcCCe-EEEeC
Confidence 31 232 44555 458888898875 568998854 455566789999998843 34553
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=80.94 E-value=28 Score=34.92 Aligned_cols=103 Identities=21% Similarity=0.381 Sum_probs=70.6
Q ss_pred eCCC----CCCHHHHHHHHHHHHhCCCCCceeec--CCC-CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHc
Q 015289 235 DANE----GYKPQEAVEVLEKLYEMGVTPVLFEQ--PVH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 307 (409)
Q Consensus 235 DaN~----~w~~~~A~~~~~~L~~~~l~~~~iEe--P~~-~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~ 307 (409)
|.+| .|+.++-+++++.|.+.|+. +||= |.. +++++.++.+.+ ......|+.- .-.+..+++.+++.
T Consensus 10 DG~Q~~~~~~s~~~k~~ia~~L~~~Gv~--~IEvG~p~~~~~~~e~i~~i~~---~~~~~~v~~~-~r~~~~di~~a~~~ 83 (363)
T TIGR02090 10 DGEQTPGVSLTVEQKVEIARKLDELGVD--VIEAGFPIASEGEFEAIKKISQ---EGLNAEICSL-ARALKKDIDKAIDC 83 (363)
T ss_pred CcCCCCCCCCCHHHHHHHHHHHHHcCCC--EEEEeCCCCChHHHHHHHHHHh---cCCCcEEEEE-cccCHHHHHHHHHc
Confidence 5555 46889999999999999986 8996 644 355666666654 2334555531 13567899999988
Q ss_pred CCCCEEEeCC-----------CCC--c-HHHHHHHHHHHHHcCCcEEEccC
Q 015289 308 NLADVINIKL-----------AKV--G-VLGALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 308 ~a~div~~k~-----------~~~--G-i~~~~~i~~~A~~~gi~~~~~~~ 344 (409)
| +|.+.+=. .+. . +..+.+.+++|+++|+.+.++.+
T Consensus 84 g-~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 84 G-VDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred C-cCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 7 67777621 111 1 34567899999999999887643
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=80.77 E-value=24 Score=34.15 Aligned_cols=57 Identities=19% Similarity=0.314 Sum_probs=47.4
Q ss_pred ccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 283 DKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 283 ~~~~ipIa~d-Es~~~~~~~~~~i~~~a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
++..+||++- ....+.+.+.++++.| ++-|.+|-+..= +..++++.++|+.+|+.+-
T Consensus 71 ~~~~VPValHLDH~~~~e~i~~ai~~G-ftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVE 132 (284)
T PRK12857 71 EKASVPVALHLDHGTDFEQVMKCIRNG-FTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVE 132 (284)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 3678999976 4566888999999987 699999998864 5568999999999999874
|
|
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.50 E-value=12 Score=39.02 Aligned_cols=116 Identities=22% Similarity=0.354 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHcCCCeEEEecCCC-hhHHHHHHHHHHhhCCCcEEEE-eCCCCCCHHHHHHHHHHHHhCCCCCceee---
Q 015289 189 EAAELASKYRKQGFTTLKLKVGKN-LKEDIEVLRAIRAVHPDSSFIL-DANEGYKPQEAVEVLEKLYEMGVTPVLFE--- 263 (409)
Q Consensus 189 ~~~~~~~~~~~~Gf~~~KiKvG~~-~~~d~~~l~avr~~~~~~~l~v-DaN~~w~~~~A~~~~~~L~~~~l~~~~iE--- 263 (409)
+..+.++.++++|.+.+=+..... -..-++.++.||+.+|++.++. |. -|.++|...++ .|.. .|=
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv---~t~~~a~~l~~----aGad--~v~vgi 297 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNV---VTAEGTRDLVE----AGAD--IVKVGV 297 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeecc---CCHHHHHHHHH----cCCC--EEEECc
Confidence 455777888889998887776532 2345667888999899988886 43 34666554443 3332 222
Q ss_pred cC-----------CCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 264 QP-----------VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 264 eP-----------~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
-| +..-++....++++.++ ..++||.+|-.+.+..|+.+.+..|+ |.+++
T Consensus 298 g~gsictt~~~~~~~~p~~~av~~~~~~~~-~~~~~via~ggi~~~~~~~~al~~ga-~~v~~ 358 (479)
T PRK07807 298 GPGAMCTTRMMTGVGRPQFSAVLECAAAAR-ELGAHVWADGGVRHPRDVALALAAGA-SNVMI 358 (479)
T ss_pred cCCcccccccccCCchhHHHHHHHHHHHHH-hcCCcEEecCCCCCHHHHHHHHHcCC-Ceeec
Confidence 01 11236667777765432 56899999999999999999999885 76655
|
|
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=80.48 E-value=34 Score=33.87 Aligned_cols=141 Identities=13% Similarity=0.053 Sum_probs=78.7
Q ss_pred HHHHHHcCCCeEEEecCC-ChhHHHHHHHHHHhhCCCcEEE-EeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCH
Q 015289 194 ASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW 271 (409)
Q Consensus 194 ~~~~~~~Gf~~~KiKvG~-~~~~d~~~l~avr~~~~~~~l~-vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~ 271 (409)
++.+.+.|.+.+.+-... +.+.-.+.++.+|+.|.++... .|+ ..+++++..++++.+.+++....+|-+-.-.-..
T Consensus 93 l~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s-~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P 171 (333)
T TIGR03217 93 LKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMS-HMTPPEKLAEQAKLMESYGADCVYIVDSAGAMLP 171 (333)
T ss_pred HHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcc-cCCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCH
Confidence 455566777777765542 2233445566667766554333 333 4567888888888888887665677777776666
Q ss_pred HHHHHhHHHhhccCC--CeEEeCCC-CCCH--HHHHHHHHcCCCCEEEeCCCCCc---H---HHHHHHHHHHHHcCCc
Q 015289 272 EGLGHVSHIAKDKFG--VSVAADES-CRSL--DDVKKIVKGNLADVINIKLAKVG---V---LGALEIIEVVRASGLN 338 (409)
Q Consensus 272 ~~~~~l~~~~~~~~~--ipIa~dEs-~~~~--~~~~~~i~~~a~div~~k~~~~G---i---~~~~~i~~~A~~~gi~ 338 (409)
+...++.+.+++..+ +||..-=. -.++ .....+++.| ++. +|.+-.| . ...-.++...+..|+.
T Consensus 172 ~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aG-a~~--iD~Sl~G~G~~aGN~~~E~lv~~l~~~g~~ 246 (333)
T TIGR03217 172 DDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAG-ATR--IDASLRGLGAGAGNAPLEVFVAVLDRLGWN 246 (333)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhC-CCE--EEeecccccccccCccHHHHHHHHHhcCCC
Confidence 666665555555554 66654221 1111 2334455665 465 4444433 2 1233445556665554
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >PRK05835 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=80.18 E-value=30 Score=33.84 Aligned_cols=57 Identities=12% Similarity=0.265 Sum_probs=47.2
Q ss_pred ccCC-CeEEeCC-CCCCHHHHHHHHHcCCCCEEEeCCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015289 283 DKFG-VSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 283 ~~~~-ipIa~dE-s~~~~~~~~~~i~~~a~div~~k~~~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
++.. +||++-= ...+.+...++++.| ++-|++|-+..= +..++++.++|+++|+.+-
T Consensus 70 ~~~~~VPValHLDHg~~~e~i~~ai~~G-ftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VE 132 (307)
T PRK05835 70 ERYPHIPVALHLDHGTTFESCEKAVKAG-FTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVE 132 (307)
T ss_pred HhcCCCeEEEECCCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 3554 9999763 466889999999997 799999999864 5678999999999999874
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 409 | ||||
| 3u9i_A | 393 | The Crystal Structure Of Mandelate RacemaseMUCONATE | 2e-58 | ||
| 3ik4_A | 365 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 5e-57 | ||
| 3s5s_A | 389 | Crystal Structure Of Putative Mandelate RacemaseMUC | 5e-54 | ||
| 1jpm_A | 366 | L-ala-d/l-glu Epimerase Length = 366 | 2e-50 | ||
| 3dfy_A | 345 | Crystal Structure Of Apo Dipeptide Epimerase From T | 6e-49 | ||
| 2zad_A | 345 | Crystal Structure Of Muconate Cycloisomerase From T | 3e-47 | ||
| 3q45_A | 368 | Crystal Structure Of Dipeptide Epimerase From Cytop | 1e-35 | ||
| 3jva_A | 354 | Crystal Structure Of Dipeptide Epimerase From Enter | 1e-32 | ||
| 2p88_A | 369 | Crystal Structure Of N-succinyl Arg/lys Racemase Fr | 5e-29 | ||
| 3r0k_A | 379 | Crystal Structure Of Nysgrc Enolase Target 200555, | 1e-22 | ||
| 1jpd_X | 324 | L-Ala-DL-Glu Epimerase Length = 324 | 4e-19 | ||
| 1wuf_A | 393 | Crystal Structure Of Protein Gi:16801725, Member Of | 7e-19 | ||
| 3eez_A | 378 | Crystal Structure Of A Putative Mandelate RacemaseM | 2e-18 | ||
| 3i4k_A | 383 | Crystal Structure Of Muconate Lactonizing Enzyme Fr | 3e-18 | ||
| 3rit_A | 356 | Crystal Structure Of Dipeptide Epimerase From Methy | 6e-18 | ||
| 2qdd_A | 378 | Crystal Structure Of A Member Of Enolase Superfamil | 1e-17 | ||
| 3fcp_A | 381 | Crystal Structure Of Muconate Lactonizing Enzyme Fr | 1e-17 | ||
| 3dg3_A | 367 | Crystal Structure Of Muconate Lactonizing Enzyme Fr | 2e-17 | ||
| 2qde_A | 397 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 4e-17 | ||
| 2zc8_A | 369 | Crystal Structure Of N-Acylamino Acid Racemase From | 5e-17 | ||
| 3qld_A | 388 | Structure Of Probable Mandelate Racemase (Aalaa1dra | 2e-16 | ||
| 2fkp_A | 375 | The Mutant G127c-T313c Of Deinococcus Radiodurans N | 4e-16 | ||
| 2ggg_A | 375 | The Mutant A68c-D72c Of Deinococcus Radiodurans N-A | 5e-16 | ||
| 2ggj_A | 375 | The Mutant Y218c Of Deinococcus Radiodurans N-Acyla | 5e-16 | ||
| 1r0m_A | 375 | Structure Of Deinococcus Radiodurans N-Acylamino Ac | 5e-16 | ||
| 2ggi_A | 375 | The Mutant E149c-A182c Of Deinococcus Radiodurans N | 1e-15 | ||
| 2pgw_A | 384 | Crystal Structure Of A Putative Muconate Cycloisome | 1e-15 | ||
| 1bkh_A | 369 | Muconate Lactonizing Enzyme From Pseudomonas Putida | 1e-14 | ||
| 1muc_A | 373 | Structure Of Muconate Lactonizing Enzyme At 1.85 An | 2e-14 | ||
| 2muc_A | 373 | Muconate Cycloisomerase Variant F329i Length = 373 | 2e-14 | ||
| 3muc_A | 369 | Muconate Cycloisomerase Variant I54v Length = 369 | 2e-14 | ||
| 4h2h_A | 376 | Crystal Structure Of An Enolase (Mandalate Racemase | 2e-14 | ||
| 1f9c_A | 372 | Crystal Structure Of Mle D178n Variant Length = 372 | 6e-14 | ||
| 2pmq_A | 377 | Crystal Structure Of A Mandelate RacemaseMUCONATE L | 1e-13 | ||
| 1nu5_A | 370 | Crystal Structure Of Pseudomonas Sp. P51 Chloromuco | 1e-13 | ||
| 1sja_A | 368 | X-Ray Structure Of O-Succinylbenzoate Synthase Comp | 1e-13 | ||
| 4izg_A | 391 | Crystal Structure Of An Enolase (mandelate Racemase | 2e-13 | ||
| 4h83_A | 388 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 5e-13 | ||
| 3my9_A | 377 | Crystal Structure Of A Muconate Cycloisomerase From | 6e-13 | ||
| 4gfi_A | 329 | Crystal Structure Of Efi-502318, An Enolase Family | 8e-13 | ||
| 4e8g_A | 391 | Crystal Structure Of An Enolase (Mandelate Racemase | 9e-13 | ||
| 4a6g_A | 368 | N-Acyl Amino Acid Racemase From Amycalotopsis Sp. T | 9e-13 | ||
| 4ggb_A | 378 | Crystal Structure Of A Proposed Galactarolactone Cy | 1e-12 | ||
| 2chr_A | 370 | A Re-Evaluation Of The Crystal Structure Of Chlorom | 3e-12 | ||
| 3bjs_A | 428 | Crystal Structure Of A Member Of Enolase Superfamil | 4e-12 | ||
| 3h12_A | 397 | Crystal Structure Of Putative Mandelate Racemase Fr | 1e-11 | ||
| 3ozm_A | 389 | Crystal Structure Of Enolase Superfamily Member Fro | 1e-11 | ||
| 1wue_A | 386 | Crystal Structure Of Protein Gi:29375081, Unknown M | 2e-11 | ||
| 3i6t_A | 381 | Crystal Structure Of Muconate Cycloisomerase From J | 3e-11 | ||
| 3i6e_A | 385 | Crystal Structure Of Muconate Lactonizing Enzyme Fr | 5e-11 | ||
| 3op2_A | 397 | Crystal Structure Of Putative Mandelate Racemase Fr | 6e-11 | ||
| 3no1_A | 398 | Crystal Structure Of Mandelate Racemase/muconate La | 7e-11 | ||
| 3msy_A | 379 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 1e-10 | ||
| 3ugv_A | 390 | Crystal Structure Of An Enolase From Alpha Pretobac | 2e-10 | ||
| 2rdx_A | 379 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 2e-10 | ||
| 3t8q_A | 370 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 5e-10 | ||
| 2ovl_A | 371 | Crystal Structure Of A Racemase From Streptomyces C | 1e-09 | ||
| 3tcs_A | 388 | Crystal Structure Of A Putative Racemase From Roseo | 1e-09 | ||
| 3ct2_A | 382 | Crystal Structure Of Muconate Cycloisomerase From P | 3e-09 | ||
| 4h1z_A | 412 | Crystal Structure Of Putative Isomerase From Sinorh | 3e-09 | ||
| 4a35_A | 441 | Crystal Structure Of Human Mitochondrial Enolase Su | 3e-09 | ||
| 2hne_A | 436 | Crystal Structure Of L-fuconate Dehydratase From Xa | 5e-09 | ||
| 2hxt_A | 441 | Crystal Structure Of L-Fuconate Dehydratase From Xa | 7e-09 | ||
| 2ppg_A | 399 | Crystal Structure Of Putative Isomerase From Sinorh | 1e-08 | ||
| 2opj_A | 327 | Crystal Structure Of O-Succinylbenzoate Synthase Le | 1e-08 | ||
| 2oz8_A | 389 | Crystal Structure Of Putative Mandelate Racemase Fr | 3e-08 | ||
| 2ps2_A | 371 | Crystal Structure Of Putative Mandelate RacemaseMUC | 3e-08 | ||
| 1yey_A | 444 | Crystal Structure Of L-Fuconate Dehydratase From Xa | 3e-08 | ||
| 2hxu_A | 441 | Crystal Structure Of K220a Mutant Of L-Fuconate Deh | 3e-08 | ||
| 3ddm_A | 392 | Crystal Structure Of Mandelate RacemaseMUCONATE Lac | 8e-08 | ||
| 4dye_A | 398 | Crystal Structure Of An Enolase (Putative Sugar Iso | 1e-07 | ||
| 1mra_A | 359 | Mandelate Racemase Mutant D270n Co-Crystallized Wit | 1e-07 | ||
| 1dtn_A | 359 | Mandelate Racemase Mutant D270n Co-crystallized Wit | 2e-07 | ||
| 3n4e_A | 393 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 2e-07 | ||
| 1mdr_A | 359 | The Role Of Lysine 166 In The Mechanism Of Mandelat | 2e-07 | ||
| 3uxk_A | 383 | P. Putida Mandelate Racemase Co-Crystallized With T | 2e-07 | ||
| 1mns_A | 357 | On The Role Of Lysine 166 In The Mechanism Of Mande | 2e-07 | ||
| 1mdl_A | 359 | Mandelate Racemase Mutant K166r Co-Crystallized Wit | 3e-07 | ||
| 2oqh_A | 385 | Crystal Structure Of An Isomerase From Streptomyces | 6e-07 | ||
| 2pce_A | 386 | Crystal Structure Of Putative Mandelate RacemaseMUC | 8e-07 | ||
| 2gdq_A | 382 | Crystal Structure Of Mandelate Racemase/muconate La | 3e-06 | ||
| 2pge_A | 377 | Crystal Structure Of Menc From Desulfotalea Psychro | 3e-06 | ||
| 3hpf_A | 391 | Crystal Structure Of The Mutant Y90f Of Divergent G | 3e-06 | ||
| 2qgy_A | 391 | Crystal Structure Of An Enolase From The Environmen | 3e-06 | ||
| 2oqy_A | 391 | The Crystal Structure Of Muconate Cycloisomerase Fr | 4e-06 | ||
| 3mwc_A | 400 | Crystal Structure Of Probable O-Succinylbenzoic Aci | 5e-06 | ||
| 3u4f_A | 388 | Crystal Structure Of A Mandelate Racemase (Muconate | 2e-05 | ||
| 4e4f_A | 426 | Crystal Structure Of Enolase Pc1_0802 (Target Efi-5 | 2e-05 | ||
| 3toy_A | 383 | Crystal Structure Of Enolase Brado_4202 (Target Efi | 3e-05 | ||
| 3h7v_A | 330 | Crystal Structure Of O-Succinylbenzoate Synthase Fr | 3e-05 | ||
| 2ozt_A | 332 | Crystal Structure Of O-Succinylbenzoate Synthase Fr | 3e-05 | ||
| 2nql_A | 388 | Crystal Structure Of A Member Of The Enolase Superf | 6e-05 | ||
| 4dn1_A | 408 | Crystal Structure Of An Enolase (Mandelate Racemase | 7e-05 | ||
| 4gir_A | 422 | Crystal Structure Of An Enolase Family Member From | 1e-04 | ||
| 3p3b_A | 392 | Crystal Structure Of Galacturonate Dehydratase From | 1e-04 | ||
| 3v5c_A | 392 | Crystal Structure Of The Mutant E234a Of Galacturon | 3e-04 | ||
| 3mzn_A | 450 | Crystal Structure Of Probable Glucarate Dehydratase | 3e-04 | ||
| 3n4f_A | 392 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 5e-04 | ||
| 3tj4_A | 372 | Crystal Structure Of An Enolase From Agrobacterium | 7e-04 | ||
| 3cyj_A | 372 | Crystal Structure Of A Mandelate RacemaseMUCONATE L | 7e-04 |
| >pdb|3U9I|A Chain A, The Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING Enzyme From Roseiflexus Sp. Length = 393 | Back alignment and structure |
|
| >pdb|3IK4|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING PROTEIN From Herpetosiphon Aurantiacus Length = 365 | Back alignment and structure |
|
| >pdb|3S5S|A Chain A, Crystal Structure Of Putative Mandelate RacemaseMUCONATE LACTONIZING Enzyme (PsiCOM TARGET 200551) FROM SORANGIUM CELLULOSUM Length = 389 | Back alignment and structure |
|
| >pdb|1JPM|A Chain A, L-ala-d/l-glu Epimerase Length = 366 | Back alignment and structure |
|
| >pdb|3DFY|A Chain A, Crystal Structure Of Apo Dipeptide Epimerase From Thermotoga Maritima Length = 345 | Back alignment and structure |
|
| >pdb|2ZAD|A Chain A, Crystal Structure Of Muconate Cycloisomerase From Thermotoga Maritima Msb8 Length = 345 | Back alignment and structure |
|
| >pdb|3Q45|A Chain A, Crystal Structure Of Dipeptide Epimerase From Cytophaga Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val Length = 368 | Back alignment and structure |
|
| >pdb|3JVA|A Chain A, Crystal Structure Of Dipeptide Epimerase From Enterococcus Faecalis V583 Length = 354 | Back alignment and structure |
|
| >pdb|2P88|A Chain A, Crystal Structure Of N-succinyl Arg/lys Racemase From Bacillus Cereus Atcc 14579 Length = 369 | Back alignment and structure |
|
| >pdb|3R0K|A Chain A, Crystal Structure Of Nysgrc Enolase Target 200555, A Putative Dipeptide Epimerase From Francisella Philomiragia : Tartrate Bound, No Mg Length = 379 | Back alignment and structure |
|
| >pdb|1JPD|X Chain X, L-Ala-DL-Glu Epimerase Length = 324 | Back alignment and structure |
|
| >pdb|1WUF|A Chain A, Crystal Structure Of Protein Gi:16801725, Member Of Enolase Superfamily From Listeria Innocua Clip11262 Length = 393 | Back alignment and structure |
|
| >pdb|3EEZ|A Chain A, Crystal Structure Of A Putative Mandelate RacemaseMUCONATE Lactonizing Enzyme From Silicibacter Pomeroyi Length = 378 | Back alignment and structure |
|
| >pdb|3I4K|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From Corynebacterium Glutamicum Length = 383 | Back alignment and structure |
|
| >pdb|3RIT|A Chain A, Crystal Structure Of Dipeptide Epimerase From Methylococcus Capsulatus Complexed With Mg And Dipeptide L-Arg-D-Lys Length = 356 | Back alignment and structure |
|
| >pdb|2QDD|A Chain A, Crystal Structure Of A Member Of Enolase Superfamily From Roseovarius Nubinhibens Ism Length = 378 | Back alignment and structure |
|
| >pdb|3FCP|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From Klebsiella Pneumoniae Length = 381 | Back alignment and structure |
|
| >pdb|3DG3|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From Mucobacterium Smegmatis Length = 367 | Back alignment and structure |
|
| >pdb|2QDE|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1 Length = 397 | Back alignment and structure |
|
| >pdb|2ZC8|A Chain A, Crystal Structure Of N-Acylamino Acid Racemase From Thermus Thermophilus Hb8 Length = 369 | Back alignment and structure |
|
| >pdb|3QLD|A Chain A, Structure Of Probable Mandelate Racemase (Aalaa1draft_2112) From Alicyclobacillus Acidocaldarius Length = 388 | Back alignment and structure |
|
| >pdb|2FKP|A Chain A, The Mutant G127c-T313c Of Deinococcus Radiodurans N- Acylamino Acid Racemase Length = 375 | Back alignment and structure |
|
| >pdb|2GGG|A Chain A, The Mutant A68c-D72c Of Deinococcus Radiodurans N-Acylamino Acid Racemase Length = 375 | Back alignment and structure |
|
| >pdb|2GGJ|A Chain A, The Mutant Y218c Of Deinococcus Radiodurans N-Acylamino Acid Racemase Length = 375 | Back alignment and structure |
|
| >pdb|1R0M|A Chain A, Structure Of Deinococcus Radiodurans N-Acylamino Acid Racemase At 1.3 : Insights Into A Flexible Binding Pocket And Evolution Of Enzymatic Activity Length = 375 | Back alignment and structure |
|
| >pdb|2GGI|A Chain A, The Mutant E149c-A182c Of Deinococcus Radiodurans N- Acylamino Acid Racemase Length = 375 | Back alignment and structure |
|
| >pdb|2PGW|A Chain A, Crystal Structure Of A Putative Muconate Cycloisomerase From Sinorhizobium Meliloti 1021 Length = 384 | Back alignment and structure |
|
| >pdb|1BKH|A Chain A, Muconate Lactonizing Enzyme From Pseudomonas Putida Length = 369 | Back alignment and structure |
|
| >pdb|1MUC|A Chain A, Structure Of Muconate Lactonizing Enzyme At 1.85 Angstroms Resolution Length = 373 | Back alignment and structure |
|
| >pdb|2MUC|A Chain A, Muconate Cycloisomerase Variant F329i Length = 373 | Back alignment and structure |
|
| >pdb|3MUC|A Chain A, Muconate Cycloisomerase Variant I54v Length = 369 | Back alignment and structure |
|
| >pdb|4H2H|A Chain A, Crystal Structure Of An Enolase (Mandalate Racemase Subgroup, Target Efi-502101) From Pelagibaca Bermudensis Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine (Betonicine) Length = 376 | Back alignment and structure |
|
| >pdb|1F9C|A Chain A, Crystal Structure Of Mle D178n Variant Length = 372 | Back alignment and structure |
|
| >pdb|2PMQ|A Chain A, Crystal Structure Of A Mandelate RacemaseMUCONATE LACTONIZING ENZYME From Roseovarius Sp. Htcc2601 Length = 377 | Back alignment and structure |
|
| >pdb|1NU5|A Chain A, Crystal Structure Of Pseudomonas Sp. P51 Chloromuconate Lactonizing Enzyme Length = 370 | Back alignment and structure |
|
| >pdb|1SJA|A Chain A, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed With N-Acetylmethionine Length = 368 | Back alignment and structure |
|
| >pdb|4IZG|A Chain A, Crystal Structure Of An Enolase (mandelate Racemase Subgroup) From Paracococus Denitrificans Pd1222 (target Nysgrc-012907) With Bound Cis-4oh-d-proline Betaine (product) Length = 391 | Back alignment and structure |
|
| >pdb|4H83|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING ENZYME (Efi Target:502127) Length = 388 | Back alignment and structure |
|
| >pdb|3MY9|A Chain A, Crystal Structure Of A Muconate Cycloisomerase From Azorhizobium Caulinodans Length = 377 | Back alignment and structure |
|
| >pdb|4GFI|A Chain A, Crystal Structure Of Efi-502318, An Enolase Family Member From Agrobacterium Tumefaciens With Homology To Dipeptide Epimerases (Bound Sodium, L-Ala-L-Glu With Ordered Loop) Length = 329 | Back alignment and structure |
|
| >pdb|4E8G|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase Subgroup) From Paracococus Denitrificans Pd1222 (Target Nysgrc-012907) With Bound Mg Length = 391 | Back alignment and structure |
|
| >pdb|4A6G|A Chain A, N-Acyl Amino Acid Racemase From Amycalotopsis Sp. Ts-1-60: G291d-F323y Mutant In Complex With N-Acetyl Methionine Length = 368 | Back alignment and structure |
|
| >pdb|4GGB|A Chain A, Crystal Structure Of A Proposed Galactarolactone Cycloisomerase From Agrobacterium Tumefaciens, Target Efi-500704, With Bound Ca, Disordered Loops Length = 378 | Back alignment and structure |
|
| >pdb|2CHR|A Chain A, A Re-Evaluation Of The Crystal Structure Of Chloromuconate Cycloisomerase Length = 370 | Back alignment and structure |
|
| >pdb|3BJS|A Chain A, Crystal Structure Of A Member Of Enolase Superfamily From Polaromonas Sp. Js666 Length = 428 | Back alignment and structure |
|
| >pdb|3H12|A Chain A, Crystal Structure Of Putative Mandelate Racemase From Bordetella Bronchiseptica Rb50 Length = 397 | Back alignment and structure |
|
| >pdb|3OZM|A Chain A, Crystal Structure Of Enolase Superfamily Member From Bordetella Bronchiseptica Complexed With Mg, M-Xylarate And L-Lyxarate Length = 389 | Back alignment and structure |
|
| >pdb|1WUE|A Chain A, Crystal Structure Of Protein Gi:29375081, Unknown Member Of Enolase Superfamily From Enterococcus Faecalis V583 Length = 386 | Back alignment and structure |
|
| >pdb|3I6T|A Chain A, Crystal Structure Of Muconate Cycloisomerase From Jannaschia Sp. Length = 381 | Back alignment and structure |
|
| >pdb|3I6E|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From Ruegeria Pomeroyi. Length = 385 | Back alignment and structure |
|
| >pdb|3OP2|A Chain A, Crystal Structure Of Putative Mandelate Racemase From Bordetella Bronchiseptica Rb50 Complexed With 2-OxoglutaratePHOSPHATE Length = 397 | Back alignment and structure |
|
| >pdb|3NO1|A Chain A, Crystal Structure Of Mandelate Racemase/muconate Lactonizing Enzyme From A Marine Actinobacterium In Complex With Magnesium Length = 398 | Back alignment and structure |
|
| >pdb|3MSY|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING ENZYME From A Marine Actinobacterium Length = 379 | Back alignment and structure |
|
| >pdb|3UGV|A Chain A, Crystal Structure Of An Enolase From Alpha Pretobacterium Bal199 (Efi Target Efi-501650) With Bound Mg Length = 390 | Back alignment and structure |
|
| >pdb|2RDX|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING ENZYME From Roseovarius Nubinhibens Ism Length = 379 | Back alignment and structure |
|
| >pdb|3T8Q|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING ENZYME Family Protein From Hoeflea Phototrophica Length = 370 | Back alignment and structure |
|
| >pdb|2OVL|A Chain A, Crystal Structure Of A Racemase From Streptomyces Coelicolor A3(2) Length = 371 | Back alignment and structure |
|
| >pdb|3TCS|A Chain A, Crystal Structure Of A Putative Racemase From Roseobacter Denitrificans Length = 388 | Back alignment and structure |
|
| >pdb|3CT2|A Chain A, Crystal Structure Of Muconate Cycloisomerase From Pseudomonas Fluorescens Length = 382 | Back alignment and structure |
|
| >pdb|4H1Z|A Chain A, Crystal Structure Of Putative Isomerase From Sinorhizobium Meliloti, Open Loop Conformation (Target Efi-502104) Length = 412 | Back alignment and structure |
|
| >pdb|4A35|A Chain A, Crystal Structure Of Human Mitochondrial Enolase Superfamily Member 1 (Enosf1) Length = 441 | Back alignment and structure |
|
| >pdb|2HNE|A Chain A, Crystal Structure Of L-fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 Length = 436 | Back alignment and structure |
|
| >pdb|2HXT|A Chain A, Crystal Structure Of L-Fuconate Dehydratase From Xanthomonas Campestris Liganded With Mg++ And D-Erythronohydroxamate Length = 441 | Back alignment and structure |
|
| >pdb|2PPG|A Chain A, Crystal Structure Of Putative Isomerase From Sinorhizobium Meliloti Length = 399 | Back alignment and structure |
|
| >pdb|2OPJ|A Chain A, Crystal Structure Of O-Succinylbenzoate Synthase Length = 327 | Back alignment and structure |
|
| >pdb|2OZ8|A Chain A, Crystal Structure Of Putative Mandelate Racemase From Mesorhizobium Loti Length = 389 | Back alignment and structure |
|
| >pdb|2PS2|A Chain A, Crystal Structure Of Putative Mandelate RacemaseMUCONATE LACTONIZING Enzyme From Aspergillus Oryzae Length = 371 | Back alignment and structure |
|
| >pdb|1YEY|A Chain A, Crystal Structure Of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 Length = 444 | Back alignment and structure |
|
| >pdb|2HXU|A Chain A, Crystal Structure Of K220a Mutant Of L-Fuconate Dehydratase From Xanthomonas Campestris Liganded With Mg++ And L-Fuconate Length = 441 | Back alignment and structure |
|
| >pdb|3DDM|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE Lactonizing Enzyme From Bordetella Bronchiseptica Rb50 Length = 392 | Back alignment and structure |
|
| >pdb|4DYE|A Chain A, Crystal Structure Of An Enolase (Putative Sugar Isomerase, Target Efi- 502095) From Streptomyces Coelicolor, No Mg, Ordered Loop Length = 398 | Back alignment and structure |
|
| >pdb|1MRA|A Chain A, Mandelate Racemase Mutant D270n Co-Crystallized With (S)-Atrolactate Length = 359 | Back alignment and structure |
|
| >pdb|1DTN|A Chain A, Mandelate Racemase Mutant D270n Co-crystallized With (s)-atrolactate Length = 359 | Back alignment and structure |
|
| >pdb|3N4E|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING From Paracoccus Denitrificans Pd1222 Length = 393 | Back alignment and structure |
|
| >pdb|1MDR|A Chain A, The Role Of Lysine 166 In The Mechanism Of Mandelate Racemase From Pseudomonas Putida: Mechanistic And Crystallographic Evidence For Stereospecific Alkylation By (r)-alpha-phenylglycidate Length = 359 | Back alignment and structure |
|
| >pdb|3UXK|A Chain A, P. Putida Mandelate Racemase Co-Crystallized With The Intermediate Analogue Benzohydroxamate Length = 383 | Back alignment and structure |
|
| >pdb|1MNS|A Chain A, On The Role Of Lysine 166 In The Mechanism Of Mandelate Racemase From Pseudomonas Putida: Mechanistic And Crystallographic Evidence For Stereospecific Alkylation By (R)-Alpha-Phenylglycidate Length = 357 | Back alignment and structure |
|
| >pdb|1MDL|A Chain A, Mandelate Racemase Mutant K166r Co-Crystallized With (R)- Mandelate Length = 359 | Back alignment and structure |
|
| >pdb|2OQH|A Chain A, Crystal Structure Of An Isomerase From Streptomyces Coelicolor A3(2) Length = 385 | Back alignment and structure |
|
| >pdb|2PCE|A Chain A, Crystal Structure Of Putative Mandelate RacemaseMUCONATE LACTONIZING Enzyme From Roseovarius Nubinhibens Ism Length = 386 | Back alignment and structure |
|
| >pdb|2GDQ|A Chain A, Crystal Structure Of Mandelate Racemase/muconate Lactonizing Enzyme From Bacillus Subtilis At 1.8 A Resolution Length = 382 | Back alignment and structure |
|
| >pdb|2PGE|A Chain A, Crystal Structure Of Menc From Desulfotalea Psychrophila Lsv54 Length = 377 | Back alignment and structure |
|
| >pdb|3HPF|A Chain A, Crystal Structure Of The Mutant Y90f Of Divergent Galactarate Dehydratase From Oceanobacillus Iheyensis Complexed With Mg And Galactarate Length = 391 | Back alignment and structure |
|
| >pdb|2QGY|A Chain A, Crystal Structure Of An Enolase From The Environmental Genome Shotgun Sequencing Of The Sargasso Sea Length = 391 | Back alignment and structure |
|
| >pdb|2OQY|A Chain A, The Crystal Structure Of Muconate Cycloisomerase From Oceanobacillus Iheyensis Length = 391 | Back alignment and structure |
|
| >pdb|3MWC|A Chain A, Crystal Structure Of Probable O-Succinylbenzoic Acid Synthet Kosmotoga Olearia Length = 400 | Back alignment and structure |
|
| >pdb|3U4F|A Chain A, Crystal Structure Of A Mandelate Racemase (Muconate Lactonizing Enzyme Family Protein) From Roseovarius Nubinhibens Length = 388 | Back alignment and structure |
|
| >pdb|4E4F|A Chain A, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240) From Pectobacterium Carotovorum Subsp. Carotovorum Pc1 Length = 426 | Back alignment and structure |
|
| >pdb|3TOY|A Chain A, Crystal Structure Of Enolase Brado_4202 (Target Efi-501651) From Bradyrhizobium Sp. Ors278 With Calcium And Acetate Bound Length = 383 | Back alignment and structure |
|
| >pdb|3H7V|A Chain A, Crystal Structure Of O-Succinylbenzoate Synthase From Thermosynechococcus Elongatus Bp-1 Complexed With Mg In The Active Site Length = 330 | Back alignment and structure |
|
| >pdb|2OZT|A Chain A, Crystal Structure Of O-Succinylbenzoate Synthase From Thermosynechococcus Elongatus Bp-1 Length = 332 | Back alignment and structure |
|
| >pdb|2NQL|A Chain A, Crystal Structure Of A Member Of The Enolase Superfamily From Agrobacterium Tumefaciens Length = 388 | Back alignment and structure |
|
| >pdb|4DN1|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase Subgroup Member) From Agrobacterium Tumefaciens (Target Efi-502088) With Bound Mg And Formate Length = 408 | Back alignment and structure |
|
| >pdb|4GIR|A Chain A, Crystal Structure Of An Enolase Family Member From Vibrio Harveyi (Efi-Target 501692) With Homology To Mannonate Dehydratase, With Mg, Ethylene Glycol And Sulfate Bound (Ordered Loops, Space Group P41212) Length = 422 | Back alignment and structure |
|
| >pdb|3P3B|A Chain A, Crystal Structure Of Galacturonate Dehydratase From Geobacillus Sp. Complexed With D-Tartrate Length = 392 | Back alignment and structure |
|
| >pdb|3V5C|A Chain A, Crystal Structure Of The Mutant E234a Of Galacturonate Dehydratase From Geobacillus Sp. Complexed With Mg Length = 392 | Back alignment and structure |
|
| >pdb|3MZN|A Chain A, Crystal Structure Of Probable Glucarate Dehydratase From Chromohalobacter Salexigens Dsm 3043 Length = 450 | Back alignment and structure |
|
| >pdb|3N4F|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING PROTEIN From Geobacillus Sp. Y412mc10 Length = 392 | Back alignment and structure |
|
| >pdb|3TJ4|A Chain A, Crystal Structure Of An Enolase From Agrobacterium Tumefaciens (Efi Target Efi-502087) No Mg Length = 372 | Back alignment and structure |
|
| >pdb|3CYJ|A Chain A, Crystal Structure Of A Mandelate RacemaseMUCONATE LACTONIZING ENZYME- Like Protein From Rubrobacter Xylanophilus Length = 372 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779} Length = 365 | Back alignment and structure |
|---|
Score = 372 bits (957), Expect = e-128
Identities = 129/363 (35%), Positives = 189/363 (52%), Gaps = 7/363 (1%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+Q +N+PL PF IA+ NV ++++L++G +G GEA P V+ E Q
Sbjct: 7 IQAISAEAINLPLTEPFAIASGAQAVAANVLVKVQLADGTLGLGEAAPFPAVSGETQTGT 66
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWR 167
L + + ++ A R +EMA++DA+ + MPL
Sbjct: 67 SAAIERLQSHLLGADVRGWRKLAAMLDHAEHEAAAA--RCGLEMAMLDALTRHYHMPLHV 124
Query: 168 LFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV 226
FGGVS + TD+TI AA A +G ++K+K ++ D+ LRAI
Sbjct: 125 FFGGVSKQLETDMTITAGDEVHAAASAKAILARGIKSIKVKTAGVDVAYDLARLRAIHQA 184
Query: 227 HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG 286
P + I+D N GY + A+ + VLFEQP+ R+DW G+ V+ + G
Sbjct: 185 APTAPLIVDGNCGYDVERALAFCAACKAESIPMVLFEQPLPREDWAGMAQVTA----QSG 240
Query: 287 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVE 346
+VAADES RS DV +I + A VINIKL K GV L++I + +A+GL LMIGGMVE
Sbjct: 241 FAVAADESARSAHDVLRIAREGTASVINIKLMKAGVAEGLKMIAIAQAAGLGLMIGGMVE 300
Query: 347 TRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWD 406
+ LAM F+ +L+AG G F FIDLDTPL ++E P + G+ +G + + GHG L
Sbjct: 301 SILAMSFSANLAAGNGGFDFIDLDTPLFIAEHPFIGGFAQTGGTLQLADVAGHGVNLEGH 360
Query: 407 NIA 409
+
Sbjct: 361 HHH 363
|
| >3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, PSI-biology; 2.90A {Roseiflexus SP} Length = 393 | Back alignment and structure |
|---|
Score = 363 bits (933), Expect = e-124
Identities = 135/386 (34%), Positives = 201/386 (52%), Gaps = 18/386 (4%)
Query: 25 SPPAAAAPTSFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELS 84
S + F+++T T+ + PL++PL PF IA+ + N+ + +EL+
Sbjct: 8 SSGVDLGTENLYFQSMTAPTTI--RALTVAPLDIPLHEPFGIASGAQEVARNLLVAVELT 65
Query: 85 NGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFAS 144
+G G+GEA P E Q A A +++ + + + L A
Sbjct: 66 DGTRGYGEAAPFPAFNGETQDMAHAAILAARSLVEGADVREWRRIALALPALPGMTGSA- 124
Query: 145 VRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTT 204
R A+E A++DA+ + +PLW FGG + ++ TD+TI S AA A +G TT
Sbjct: 125 -RCAIETAILDALTRRARLPLWAFFGGAATSLETDVTITTGSVTAAARAAQAIVARGVTT 183
Query: 205 LKLKVG---------KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEM 255
+K+K+G + ++ D+ + AIR V P + ILD N GY +A+ +L+ L
Sbjct: 184 IKIKIGAGDPDATTIRTMEHDLARIVAIRDVAPTARLILDGNCGYTAPDALRLLDMLGVH 243
Query: 256 GVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315
G+ P LFEQPV +DD EGL + V VAADES S D ++ + DV+NI
Sbjct: 244 GIVPALFEQPVAKDDEEGLRRL----TATRRVPVAADESVASATDAARLARNAAVDVLNI 299
Query: 316 KLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLL 375
KL K G++ AL+I + R +GL+LMIGGMVE+ LAM + +AG G F+F+DLDTPL L
Sbjct: 300 KLMKCGIVEALDIAAIARTAGLHLMIGGMVESLLAMTVSACFAAGQGGFRFVDLDTPLFL 359
Query: 376 SEDPVLDGYEVSGAVYKFTNAR-GHG 400
+E+P G G T GHG
Sbjct: 360 AENPFDGGMTYHGGTIDLTLIEAGHG 385
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A Length = 345 | Back alignment and structure |
|---|
Score = 360 bits (926), Expect = e-123
Identities = 116/348 (33%), Positives = 177/348 (50%), Gaps = 7/348 (2%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+ + PF I S + NV + I L +G G+GEA V E +
Sbjct: 4 IVNVKLSLKRYEYEKPFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEAL 63
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWR 167
+ + E++ +F + L G +AAV+ A +DA+++ + +
Sbjct: 64 LAIENAVREMITGIDVRNYARIFEITDRL-FGFPSL--KAAVQFATLDALSQELGTQVCY 120
Query: 168 LFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH 227
L GG + I TD T+ I + + A K ++GF +K+KVG+NLKEDIE + I V
Sbjct: 121 LLGGKRDEIETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKVGENLKEDIEAVEEIAKVT 180
Query: 228 PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGV 287
+ +I+DAN GY +EAVE +Y+ G+ ++EQPV R+D EGL V +
Sbjct: 181 RGAKYIVDANMGYTQKEAVEFARAVYQKGIDIAVYEQPVRREDIEGLKFV----RFHSPF 236
Query: 288 SVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVET 347
VAADES R+ DV ++VK D +NIKL K G+ AL I+E+ +SGL LMIG M E+
Sbjct: 237 PVAADESARTKFDVMRLVKEEAVDYVNIKLMKSGISDALAIVEIAESSGLKLMIGCMGES 296
Query: 348 RLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTN 395
L + + H + G G F+F DLD+ L+L E+ + G + +
Sbjct: 297 SLGINQSVHFALGTGAFEFHDLDSHLMLKEEVFRGKFIQDGPRMRVKD 344
|
| >3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum} Length = 389 | Back alignment and structure |
|---|
Score = 362 bits (930), Expect = e-123
Identities = 143/355 (40%), Positives = 192/355 (54%), Gaps = 7/355 (1%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
++R L++PL PF IA ++ N+ + +EL++G +G+GEA LP E Q +
Sbjct: 7 IRRVSIEALDIPLHEPFGIAGGAQERAANLLVTVELADGTLGFGEAAPLPAFNGETQDGS 66
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWR 167
A E + S A A +V + G + R A+E A++DA+ K MPLW
Sbjct: 67 RAAAVSLREAVVGSDARAWRAVARALREASGGG-AGAARCAIETAILDALTKRAGMPLWA 125
Query: 168 LFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKN-LKEDIEVLRAIRAV 226
FGG +TTDITI SP A E A + GF LK+KVG D + AI A
Sbjct: 126 FFGGSGTALTTDITITTGSPERAEEAARRAAAMGFRALKVKVGGRLAASDPARIEAIHAA 185
Query: 227 HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG 286
P +S ILD N G EA+ ++ +G L EQPV RDDW+G+ V+ + G
Sbjct: 186 APGASLILDGNGGLTAGEALALVAHARRLGADVALLEQPVPRDDWDGMKEVTR----RAG 241
Query: 287 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVE 346
V VAADES S +DV ++ A V+NIKL K G+ AL+I V RA+GL LMIGGMVE
Sbjct: 242 VDVAADESAASAEDVLRVAAERAATVVNIKLMKGGIAEALDIAAVARAAGLGLMIGGMVE 301
Query: 347 TRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNAR-GHG 400
+ LAM + +AGLG F F+DLDTPL L+E+P G+ G R GHG
Sbjct: 302 SVLAMTASACFAAGLGGFSFVDLDTPLFLAENPFDGGFVQRGPALSLEGIRAGHG 356
|
| >3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A Length = 356 | Back alignment and structure |
|---|
Score = 347 bits (892), Expect = e-118
Identities = 91/357 (25%), Positives = 158/357 (44%), Gaps = 12/357 (3%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+ + R + PL P+ IA +++++N+ + I ++G +G G A HVT E +
Sbjct: 3 IADIQVRTEHFPLTRPYRIAFRSIEEIDNLIVEIRTADGLLGLGAASPERHVTGETLEAC 62
Query: 108 M-VKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
+ L L + +A LP A RAA++MAL D VA+ + +PL
Sbjct: 63 HAALDHDRLGWLMGRDIRTLPRLCRELAERLPAAPAA--RAALDMALHDLVAQCLGLPLV 120
Query: 167 RLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-A 225
+ G +++ T +TI I E A ++ GF LK+K+ + ++D E LR +
Sbjct: 121 EILGRAHDSLPTSVTIGIKPVEETLAEAREHLALGFRVLKVKLCGDEEQDFERLRRLHET 180
Query: 226 VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF 285
+ + +D N+ Y + + + E+G+ EQP + L +
Sbjct: 181 LAGRAVVRVDPNQSYDRDGLLRLDRLVQELGIE--FIEQPFPAGRTDWLRALPK----AI 234
Query: 286 GVSVAADESCRSLDDVKKIVKGNLA-DVINIKLAKV-GVLGALEIIEVVRASGLNLMIGG 343
+AADES D + A + NIKL K G+ A I + +G++LM G
Sbjct: 235 RRRIAADESLLGPADAFALAAPPAACGIFNIKLMKCGGLAPARRIATIAETAGIDLMWGC 294
Query: 344 MVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 400
M E+R+++ A H + +++DLD L+ D G+ + + T G G
Sbjct: 295 MDESRISIAAALHAALACPATRYLDLDGSFDLARDVAEGGFILEDGRLRVTERPGLG 351
|
| >3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A Length = 368 | Back alignment and structure |
|---|
Score = 342 bits (880), Expect = e-116
Identities = 99/366 (27%), Positives = 171/366 (46%), Gaps = 12/366 (3%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+ + E V L PF I+ L NV +RI ++G +G+GE + E TA
Sbjct: 3 ITQVELYKSPVKLKEPFKISLGILTHANNVIVRIHTASGHIGYGECSPFMTIHGESMDTA 62
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWR 167
+ + L + + + S ++ ++ G+ ++A +AL D A+ +PL+
Sbjct: 63 FIVGQYLAKGLIGTSCLDIVSNSLLMDAIIYGNSCI--KSAFNIALYDLAAQHAGLPLYA 120
Query: 168 LFGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-A 225
GG I TD T+ I P + A A + +K GF +K+KVG + + D+E +R IR A
Sbjct: 121 FLGGKKDKIIQTDYTVSIDEPHKMAADAVQIKKNGFEIIKVKVGGSKELDVERIRMIREA 180
Query: 226 VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF 285
+ +DAN+G+ + A+E L L + E+PV R+ + L +
Sbjct: 181 AGDSITLRIDANQGWSVETAIETLTLLEPYNIQ--HCEEPVSRNLYTALPKIRQ----AC 234
Query: 286 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGM 344
+ + ADESC + D +++++ D N+KL+K G+ AL II + + + + +GG
Sbjct: 235 RIPIMADESCCNSFDAERLIQIQACDSFNLKLSKSAGITNALNIIRLAEQAHMPVQVGGF 294
Query: 345 VETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVS-GAVYKFTNARGHGGFL 403
+E+RL A H++ + D DTPL+ DPV G + + G G
Sbjct: 295 LESRLGFTAAAHVALVSKTICYYDFDTPLMFEADPVRGGIVYQQRGIIEVPETAGLGAGY 354
Query: 404 HWDNIA 409
D ++
Sbjct: 355 QKDYLS 360
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A Length = 366 | Back alignment and structure |
|---|
Score = 341 bits (878), Expect = e-116
Identities = 126/357 (35%), Positives = 181/357 (50%), Gaps = 10/357 (2%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+ R E + VPL PF A + E+V +RI +G VGWGEAP +T + +
Sbjct: 3 IIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSI 62
Query: 108 MVKASEAC-EVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
L ++ + LL G+ A +AAVEMAL D A+ +PL+
Sbjct: 63 ESAIHHVLKPALLGKSLAGYEAILHDIQHLLTGNMSA--KAAVEMALYDGWAQMCGLPLY 120
Query: 167 RLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIR- 224
++ GG +T+ TD T+ + SP E A A Y KQGF TLK+KVGK ++ DI ++ IR
Sbjct: 121 QMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRK 180
Query: 225 AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDK 284
V LDAN+G++P+EAV + K+ + G+ L EQPVH+DD GL V D
Sbjct: 181 RVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKV----TDA 236
Query: 285 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGG 343
+ ADES + ++++ AD+INIKL K G+ GA +I + A G+ M+G
Sbjct: 237 TDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGS 296
Query: 344 MVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 400
M+ET+L + A H +A D D PL+L D G SG+ G G
Sbjct: 297 MIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLG 353
|
| >3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A* Length = 379 | Back alignment and structure |
|---|
Score = 340 bits (874), Expect = e-115
Identities = 82/357 (22%), Positives = 163/357 (45%), Gaps = 11/357 (3%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+ + + +PL F A + ++++A+ + L NG G+G AP +T + Q
Sbjct: 5 IIDIKTSIIKIPLKRTFITAVRSTNHIDSLAVELTLDNGVKGYGVAPATTAITGDTLQGM 64
Query: 108 MVKASEAC-EVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
E V+ S + + + A + A+++A D +AK + +
Sbjct: 65 QYIIREIFAPVILGSDLSDYKQTLELAFKKVMFNSAA--KMAIDLAYHDLLAKEQDISVA 122
Query: 167 RLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-A 225
+L G +N+I TD++I + AE + + FT +K+K G + DI++L+A+
Sbjct: 123 KLLGAKANSIVTDVSISCGNVAETIQNIQNGVEANFTAIKVKTGADFNRDIQLLKALDNE 182
Query: 226 VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF 285
+ F DAN+G+ + + +E++ + + + EQPV D + + ++
Sbjct: 183 FSKNIKFRFDANQGWNLAQTKQFIEEINKYSLNVEIIEQPVKYYDIKAMAEITK----FS 238
Query: 286 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGM 344
+ V ADES D ++++ ++INIKLAK G+L A +I ++ ++G++ M+G M
Sbjct: 239 NIPVVADESVFDAKDAERVIDEQACNMINIKLAKTGGILEAQKIKKLADSAGISCMVGCM 298
Query: 345 VETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVS-GAVYKFTNARGHG 400
+E+ + + DLD +++D D + + N +G G
Sbjct: 299 MESPAGILATASFALAED-ITVADLDPLDWVAKDLYSDYITFNEPNIILKDNLKGFG 354
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* Length = 354 | Back alignment and structure |
|---|
Score = 338 bits (868), Expect = e-114
Identities = 112/357 (31%), Positives = 175/357 (49%), Gaps = 12/357 (3%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+++ R + L FTIA ++ ++ + IE G VG+GE +T E
Sbjct: 3 IKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLVGYGEGGPGIFITGETLAGT 62
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWR 167
+ + + + + V+ + A +AA+++A D + + +PL++
Sbjct: 63 LETIELFGQAIIGLNPFNIEKIHEVMDKISAFAPAA--KAAIDIACYDLMGQKAQLPLYQ 120
Query: 168 LFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AV 226
L GG N + TDIT+ I P A+ A + K GF TLK+KVG ++ DI ++AIR AV
Sbjct: 121 LLGGYDNQVITDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTGIEADIARVKAIREAV 180
Query: 227 HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG 286
D LDAN+ + P++AV+ ++ L + + L EQPV R D EGL +V +
Sbjct: 181 GFDIKLRLDANQAWTPKDAVKAIQALADYQIE--LVEQPVKRRDLEGLKYV----TSQVN 234
Query: 287 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMV 345
++ ADESC D ++VK DVINIKL K G+ AL+I ++ +G+ MIG M
Sbjct: 235 TTIMADESCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMIGCMA 294
Query: 346 -ETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSG-AVYKFTNARGHG 400
ET + + A HL+A DLD L PV G + + + A G G
Sbjct: 295 EETTIGITAAAHLAAAQKNITRADLDATFGLETAPVTGGVSLEAKPLLELGEAAGLG 351
|
| >3ijl_A Muconate cycloisomerase; enolase superfamily, dipeptide epimerase, L-Pro-D-Glu, nonpr binding; HET: DGL; 1.50A {Bacteroides thetaiotaomicron} PDB: 3iji_A* 3ijq_A* Length = 338 | Back alignment and structure |
|---|
Score = 297 bits (762), Expect = 7e-99
Identities = 101/354 (28%), Positives = 164/354 (46%), Gaps = 24/354 (6%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
+ P + L FT+AT +V + IE G G+GEA +P E ++ ++
Sbjct: 2 KMTFFPYELKLRHVFTVATYSRTTTPDVQVEIE-YEGVTGYGEA-SMPPYLGETVES-VM 58
Query: 110 KASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLF 169
+ + + S L + V L P A +AAV++AL D V K + P ++++
Sbjct: 59 NFLKKVNLEQFSDPFQLEDILSYVDSLSPKDTAA--KAAVDIALHDLVGKLLGAPWYKIW 116
Query: 170 GG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP 228
G T +T TI I +P K F LK+K+G++ D E++ IR+
Sbjct: 117 GLNKEKTPSTTFTIGIDTPDVVRAKT-KECAGLFNILKVKLGRD--NDKEMIETIRS-VT 172
Query: 229 DSSFILDANEGYKPQE-AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGV 287
D +DAN+G+K ++ A++++ L E G+ + EQP+ ++ + + V + +
Sbjct: 173 DLPIAVDANQGWKDRQYALDMIHWLKEKGIV--MIEQPMPKEQLDDIAWV----TQQSPL 226
Query: 288 SVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVE 346
V ADES + L DV + INIKL K G+ A +++ + A G+ +M+G M E
Sbjct: 227 PVFADESLQRLGDVAALK--GAFTGINIKLMKCTGMREAWKMVTLAHALGMRVMVGCMTE 284
Query: 347 TRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 400
T A+ A S F DLD LL+S D G EV + G G
Sbjct: 285 TSCAISAASQFSPA---VDFADLDGNLLISNDRF-KGVEVVNGKITLNDLPGIG 334
|
| >2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure initiative; 1.60A {Desulfotalea psychrophila LSV54} Length = 377 | Back alignment and structure |
|---|
Score = 298 bits (765), Expect = 7e-99
Identities = 67/378 (17%), Positives = 130/378 (34%), Gaps = 35/378 (9%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
R ++ P + L +R++ +G G GE ++P ++ + ++
Sbjct: 6 ELSYRRSDLIFKRPAGTSRGVLTSKPTWFVRLD-IDGHGGQGEVSLIPGLSLDPEEQIGR 64
Query: 110 KASEACEVLKESPAMALGSVFGVVAGLLPGH---------------------QFASVRAA 148
+ L+ + L G +F ++R A
Sbjct: 65 ELDLLARRLRAEEPIRLRQFLAERGGADFSDYRSVLTDIAGILDSWQVSTDGRFPALRFA 124
Query: 149 VEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLK 208
+EMAL+D ++ F I + I + A E +G+ LKLK
Sbjct: 125 LEMALLDLLSGGRQEWFASDFTRGEKRIPVNGLIWMGEAAFMQEQIEAKLAEGYGCLKLK 184
Query: 209 VGK-NLKEDIEVLRAIRAVHP--DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQP 265
+G + ++ +L IR +DAN + P A + L++L + + EQP
Sbjct: 185 IGAIDFDKECALLAGIRESFSPQQLEIRVDANGAFSPANAPQRLKRLSQFHLH--SIEQP 242
Query: 266 VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIV--KGNLADVINIKLAKV-GV 322
+ + W + + +++A DE L ++ I +K + + G
Sbjct: 243 IRQHQWSEMAAL----CANSPLAIALDEELIGLGAEQRSAMLDAIRPQYIILKPSLLGGF 298
Query: 323 LGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLD 382
A + IE+ R G+ I +E+ L + +A L T L + +
Sbjct: 299 HYAGQWIELARERGIGFWITSALESNLGLAAIAQWTALYQPTMPQGLGTGQLYTNNLP-S 357
Query: 383 GYEVSGAVYKFTNARGHG 400
V G + + H
Sbjct: 358 NLAVDGGLLGVSEGHHHH 375
|
| >1jpd_X L-Ala-D/L-Glu epimerase; enolase superfamily, muconate lactonizing enzyme subgroup, alpha/beta barrel, structural genomics, isomerase; 2.60A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 Length = 324 | Back alignment and structure |
|---|
Score = 296 bits (759), Expect = 1e-98
Identities = 93/334 (27%), Positives = 146/334 (43%), Gaps = 28/334 (8%)
Query: 49 QRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAM 108
+ + PL PF IA + V + +E G G GE P E + M
Sbjct: 5 RTVKVFEEAWPLHTPFVIARGSRSEARVVVVELE-EEGIKGTGECTPYPRYG-ESDASVM 62
Query: 109 VKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRL 168
+++ P + G + +LP A R A++ AL D A+ L L
Sbjct: 63 A------QIMSVVPQLEKGLTREELQKILP-AGAA--RNALDCALWDLAARRQQQSLADL 113
Query: 169 FGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH 227
G + T+ T T+ I +P + A AS + G LK+K+ + E + AIR
Sbjct: 114 IGITLPETVITAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDNH--LISERMVAIRTAV 171
Query: 228 PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGV 287
PD++ I+DANE ++ + + L ++GV + EQP+ D L + H +
Sbjct: 172 PDATLIVDANESWRAEGLAARCQLLADLGV--AMLEQPLPAQDDAALENFIH------PL 223
Query: 288 SVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVE 346
+ ADESC + ++K + +++NIKL K G+ AL + RA G +LM+G M+
Sbjct: 224 PICADESCHTRSNLKALK--GRYEMVNIKLDKTGGLTEALALATEARAQGFSLMLGCMLC 281
Query: 347 TRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPV 380
T A+ A L F DLD P L+ D
Sbjct: 282 TSRAISAALPLVPQ---VSFADLDGPTWLAVDVE 312
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* Length = 367 | Back alignment and structure |
|---|
Score = 293 bits (753), Expect = 4e-97
Identities = 75/359 (20%), Positives = 146/359 (40%), Gaps = 15/359 (4%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+ P ++P P A+ + E+V +R+ +G VG EAP P E Q
Sbjct: 3 IVAIGAIPFSIPYTKPLRFASGEVHAAEHVLVRVHTDDGIVGVAEAPPRPFTYGETQTGI 62
Query: 108 MVKASEAC-EVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
+ + L +A G+ A +AA++MA+ DA+ +S+ + +
Sbjct: 63 VAVIEQYFAPALIGLTLTEREVAHTRMART-VGNPTA--KAAIDMAMWDALGQSLRLSVS 119
Query: 167 RLFGGVSNTITTDITIPIVSPAEAAELASKYRK-QGFTTLKLKVGKN-LKEDIEVLRAIR 224
+ GG ++ + + P + A + R+ G T K+KVG+ ++ D V+RA+R
Sbjct: 120 EMLGGYTDRMRVSHMLGFDDPVKMVAEAERIRETYGINTFKVKVGRRPVQLDTAVVRALR 179
Query: 225 -AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
+D N G+ E++ + ++ ++ + E+ DD +
Sbjct: 180 ERFGDAIELYVDGNRGWSAAESLRAMREMADLDLL--FAEELCPADDVLSRRRL----VG 233
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGG 343
+ + ADES + DV + V G A I+IK A+ G G+ + + GL++++G
Sbjct: 234 QLDMPFIADESVPTPADVTREVLGGSATAISIKTARTGFTGSTRVHHLAEGLGLDMVMGN 293
Query: 344 MVETRLAMGFAGHLSAGLGCFKF--IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 400
++ ++ +L L +S+D + ++S G G
Sbjct: 294 QIDGQIGTACTVSFGTAFERTSRHAGELSNFLDMSDDLLTVPLQISDGQLHRRPGPGLG 352
|
| >1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1 Length = 393 | Back alignment and structure |
|---|
Score = 292 bits (750), Expect = 3e-96
Identities = 92/359 (25%), Positives = 163/359 (45%), Gaps = 18/359 (5%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGE--APVLPHVTAEDQQ 105
Q+A +PL+APF + L + I + G G+GE A LP T E
Sbjct: 22 FQKARLIHAELPLLAPFKTSYGELKSKDFYIIELINEEGIHGYGELEAFPLPDYTEETLS 81
Query: 106 TAMVKASEAC-EVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMP 164
+A++ E +L + + + + + G++ A +AAVE+A+ DA AK
Sbjct: 82 SAILIIKEQLLPLLAQRKIRKPEEIQELFS-WIQGNEMA--KAAVELAVWDAFAKMEKRS 138
Query: 165 LWRLFGGVSNTITTDITIPIVSPAEA-AELASKYRKQGFTTLKLKVGKNLKEDIEVLRAI 223
L ++ G +I ++I + E +L ++Y QG+ +KLK+ N +DI+ + A+
Sbjct: 139 LAKMIGATKESIKVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIAPN--KDIQFVEAV 196
Query: 224 RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
R P S + DAN Y ++ + L++L + + + EQP D+ + +
Sbjct: 197 RKSFPKLSLMADANSAYNREDFLL-LKELDQYDL--EMIEQPFGTKDFVDHAWL----QK 249
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIG 342
+ + DE+ RS+ DV++ IN+KLA+V G+ AL+I E + + + G
Sbjct: 250 QLKTRICLDENIRSVKDVEQAHSIGSCRAINLKLARVGGMSSALKIAEYCALNEILVWCG 309
Query: 343 GMVETRLAMGFAGHLSAGLGCFKFIDLD-TPLLLSEDPVLDGYEVSGAVYKFTNARGHG 400
GM+E + L+A D+ + +ED V +E++ K G G
Sbjct: 310 GMLEAGVGRAHNIALAARNEFVFPGDISASNRFFAEDIVTPAFELNQGRLKVPTNEGIG 368
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* Length = 369 | Back alignment and structure |
|---|
Score = 288 bits (739), Expect = 6e-95
Identities = 84/336 (25%), Positives = 159/336 (47%), Gaps = 13/336 (3%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
+ +PL PF I+ + ++ +++E G +G+GE HVT E ++
Sbjct: 5 AIHLYAIRLPLRNPFVISYGSYSDMPSIIVKMETDEGIIGYGEGVADDHVTGESWESTFH 64
Query: 110 KASEA-CEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRL 168
L M + + ++ + G A +AA+++A D + K ++ P+++L
Sbjct: 65 TLKHTLTPALIGQNPMNIEKIHDMMDNTIYGVPTA--KAAIDIACFDIMGKKLNQPVYQL 122
Query: 169 FGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AV 226
GG + I P AE A+ ++G+ + K+KVG N+KED++ + A+R V
Sbjct: 123 IGGRYHEEFPVTHVLSIADPENMAEEAASMIQKGYQSFKMKVGTNVKEDVKRIEAVRERV 182
Query: 227 HPDSSFILDANEGYK-PQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF 285
D + +D N+G+K + L L + + EQPV DD + + H+ + K
Sbjct: 183 GNDIAIRVDVNQGWKNSANTLTALRSLGHLNID--WIEQPVIADDIDAMAHI----RSKT 236
Query: 286 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGM 344
+ + DE +S ++++I+K AD +NIKL K G+ A+++ +G+ +G M
Sbjct: 237 DLPLMIDEGLKSSREMRQIIKLEAADKVNIKLMKCGGIYPAVKLAHQAEMAGIECQVGSM 296
Query: 345 VETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPV 380
VE+ +A H++ ++L PL ++D
Sbjct: 297 VESSVASSAGFHVAFSKKIITSVELTGPLKFTKDIG 332
|
| >2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase, PSI, protein structure initiative; 1.42A {Synechococcus elongatus} PDB: 3h7v_A Length = 332 | Back alignment and structure |
|---|
Score = 286 bits (735), Expect = 7e-95
Identities = 75/353 (21%), Positives = 126/353 (35%), Gaps = 32/353 (9%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
R + R PL P T A + +R+E G VG+GE LP +E +
Sbjct: 4 RWQWRIYEEPLQEPLTTAQGVWRSRSGIYLRLEDEQGQVGYGEIAPLPGWGSETLNADI- 62
Query: 110 KASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLF 169
+ ++ P + + LP QF A ++ + P+ L
Sbjct: 63 ------ALCQQLPGHLTPEIMATIPEALPAAQFG--FATAWQSVGRLPYRVRPWPICALL 114
Query: 170 GGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIR-AVH 227
G S A E + ++G TT K KVG + +E+ +L+A+ A+
Sbjct: 115 G---------------SGQAALEQWQQSWQRGQTTFKWKVGVMSPEEEQAILKALLAALP 159
Query: 228 PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF-EQPVHRDDWEGLGHVSHIAKDKFG 286
P + LDAN + A L G + + EQP+ D W+ L ++
Sbjct: 160 PGAKLRLDANGSWDRATANRWFAWLDRHGNGKIEYVEQPLPPDQWQALLSLA----QTVT 215
Query: 287 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVE 346
++A DES S +V++ V IK A G +L ++ L+ +E
Sbjct: 216 TAIALDESVVSAAEVQRWVDRGWPGFFVIKTALFGDPDSLSLLLRRGLEPQRLVFSSALE 275
Query: 347 TRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGH 399
+A HL + P+L +++ + GH
Sbjct: 276 GAIARTAIFHLLETWQPCHALGFGVDRWR-SAPLLTTLTAYERLWERLDQEGH 327
|
| >2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus} Length = 369 | Back alignment and structure |
|---|
Score = 286 bits (733), Expect = 5e-94
Identities = 86/368 (23%), Positives = 155/368 (42%), Gaps = 19/368 (5%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA--PVLPHVTAEDQQ 105
++ AE R L +PL F + + + +R+ G G GE LP E
Sbjct: 3 IEAAELRILELPLKFRFETSFGVQTKRTILLLRLF-GEGLEGLGEGVMERLPLYREETVA 61
Query: 106 TAMVKASEAC-EVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMP 164
A E + ++ +A G+ A +A +EMA D AK++ P
Sbjct: 62 GARYLLEEVFLPRVLGRDLPNPEALREALAPF-RGNPMA--KAVLEMAFFDLWAKALGRP 118
Query: 165 LWRLFGGVSNTITTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAI 223
LW++ GGV + +++ I S + + ++ ++G+ +KLK+ D EVL+A+
Sbjct: 119 LWQVLGGVRQAVEVGVSLGIQPSVEDTLRVVERHLEEGYRRIKLKIKPG--WDYEVLKAV 176
Query: 224 RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
R P+++ DAN Y + L++L E+ + EQP+ DD + +
Sbjct: 177 REAFPEATLTADANSAYSLANLAQ-LKRLDELRL--DYIEQPLAYDDLLDHAKL----QR 229
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIG 342
+ + DES + +K ++ V N+K A++ G +L + + ++G+ L +G
Sbjct: 230 ELSTPICLDESLTGAEKARKAIELGAGRVFNVKPARLGGHGESLRVHALAESAGIPLWMG 289
Query: 343 GMVETRLAMGFAGHLSAGLGCFKFIDLDT-PLLLSEDPVLDGYEVSGAVYKFTNARGHGG 401
GM+E + HL+ G K D+ + ED V + E + G G
Sbjct: 290 GMLEAGVGRAHNLHLATLPGFTKPGDVSSASRYWEEDIVEEALEAKDGLMPVPEGVGIGV 349
Query: 402 FLHWDNIA 409
L +
Sbjct: 350 HLKLPFVE 357
|
| >1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1 Length = 386 | Back alignment and structure |
|---|
Score = 278 bits (713), Expect = 7e-91
Identities = 79/368 (21%), Positives = 139/368 (37%), Gaps = 18/368 (4%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA--PVLPHVTAEDQQ 105
+Q E + +PL PF + RL++ I G G+GE P E
Sbjct: 22 IQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQGFGELVAFEQPDYVQETLV 81
Query: 106 TAM-VKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMP 164
T + +L V + + GH +AA+E A+ D AK
Sbjct: 82 TERFIIQQHLIPLLLTEAIEQPQEVSTIFEEV-KGHWMG--KAALETAIWDLYAKRQQKS 138
Query: 165 LWRLFGGVSNTITTDITIPIVSPAEA-AELASKYRKQGFTTLKLKVGKNLKEDIEVLRAI 223
L FG I I++ I + ++G+ +KLK+ D+E + I
Sbjct: 139 LTEFFGPTRRKIPVGISLGIQEDLPQLLKQVQLAVEKGYQRVKLKIRPG--YDVEPVALI 196
Query: 224 RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
R P+ ++DAN Y + + L++L + + EQP DD+ + +
Sbjct: 197 RQHFPNLPLMVDANSAYTLADLPQ-LQRLDHYQLA--MIEQPFAADDFLDHAQL----QR 249
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIG 342
+ + DE+ RSL D + + IN+K+ +V G+ AL+I + + L + +G
Sbjct: 250 ELKTRICLDENIRSLKDCQVALALGSCRSINLKIPRVGGIHEALKIAAFCQENDLLVWLG 309
Query: 343 GMVETRLAMGFAGHLSAGLGCFKFIDLDTP-LLLSEDPVLDGYEVSGAVYKFTNARGHGG 401
GM E+ + ++ D+ ED + + + + G G
Sbjct: 310 GMFESGVGRALNLQFASQPTFSFPGDISATERYFYEDIITEPFILEQGTMTVPQGLGIGV 369
Query: 402 FLHWDNIA 409
L N+
Sbjct: 370 TLSQTNLL 377
|
| >3qld_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, isomerase; HET: MSE; 1.85A {Alicyclobacillus acidocaldarius LAA1} Length = 388 | Back alignment and structure |
|---|
Score = 277 bits (711), Expect = 2e-90
Identities = 86/375 (22%), Positives = 149/375 (39%), Gaps = 24/375 (6%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQ 105
+Q L++PL P A + + + + +++ ++G GW E L P T E
Sbjct: 3 LQTCVLHRLSLPLKFPMRTAHGHIREKQAILVQLVDADGIEGWSECVALAEPTYTEECTD 62
Query: 106 TAMVKASE-------ACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVA 158
TA V + G++ + AA+EMA+ D A
Sbjct: 63 TAWVMLVHHLVPRFARWLRAASQDQDVDPRTVCEALRDVRGNRMS--VAAIEMAVWDWYA 120
Query: 159 KSVSMPLWRLFGGVSNTITTDITIPIVSPAEA-AELASKYRKQGFTTLKLKVGKNLKEDI 217
PL L GG + + T+ + + + +QGF +KLK+ D
Sbjct: 121 ARTGQPLVGLLGGGRDRVEVSATLGMSESLDVLIQSVDAAVEQGFRRVKLKIAPG--RDR 178
Query: 218 EVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 277
++A+R +PD + DAN Y+P++A VL +L + EQP+ DDW L +
Sbjct: 179 AAIKAVRLRYPDLAIAADANGSYRPEDA-PVLRQLDAYDLQ--FIEQPLPEDDWFDLAKL 235
Query: 278 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASG 336
+ V DES RS+ ++K + A V+N+K ++ G L ++V +G
Sbjct: 236 ----QASLRTPVCLDESVRSVRELKLTARLGAARVLNVKPGRLGGFGATLRALDVAGEAG 291
Query: 337 LNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLD-TPLLLSEDPVLDGYE-VSGAVYKFT 394
+ +GGM ET + +A DL + +D + + V V +
Sbjct: 292 MAAWVGGMYETGVGRVHGLIAAALPLMRYATDLGPSDRYFEQDVLKEPIAFVEPGVIQVP 351
Query: 395 NARGHGGFLHWDNIA 409
G ++ D +
Sbjct: 352 QCAGVADWVDRDAVR 366
|
| >3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A Length = 385 | Back alignment and structure |
|---|
Score = 273 bits (700), Expect = 7e-89
Identities = 78/357 (21%), Positives = 135/357 (37%), Gaps = 14/357 (3%)
Query: 50 RAENRPLNVPLIAPFTIATSRL-DQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAM 108
+ L +P+++ R+ E V +R+ G G+GEA T + +
Sbjct: 12 AMDLWHLALPVVSARDHGIGRVEGSCEIVVLRLVAEGGAEGFGEASPWAVFTGTPEASYA 71
Query: 109 VKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRL 168
++ ++ A + A +AA++ AL+D + ++P+W L
Sbjct: 72 ALDRYLRPLVIGRRVGDRVAIMDEAARAVAHCTEA--KAALDSALLDLAGRISNLPVWAL 129
Query: 169 FGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV 226
GG +TI +I L + R G +KLK G ++ DI L I
Sbjct: 130 LGGKCRDTIPLSCSIANPDFDADIALMERLRADGVGLIKLKTGFRDHAFDIMRLELIARD 189
Query: 227 HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG 286
P+ +D N+G + EAV + + + EQPV +E + + +
Sbjct: 190 FPEFRVRVDYNQGLEIDEAVPRVLDVAQFQPD--FIEQPVRAHHFELMARL----RGLTD 243
Query: 287 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMV 345
V + ADES +D+ + + D ++IK+ K G+ A + + A GL G M
Sbjct: 244 VPLLADESVYGPEDMVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLMAYGGDMF 303
Query: 346 ETRLAMGFAGHLSAGLGCFKFI--DLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 400
E LA H+ A L+ED + + V + G G
Sbjct: 304 EAGLAHLAGTHMIAATPEITLGCEFYQASYFLNEDILETPFRVEAGQVIVPDGPGLG 360
|
| >3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp} Length = 381 | Back alignment and structure |
|---|
Score = 271 bits (695), Expect = 3e-88
Identities = 90/361 (24%), Positives = 159/361 (44%), Gaps = 16/361 (4%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVT-AEDQQT 106
V++ E+ ++VP I P ++ + + V +R+ S+G G GEA + ++ +
Sbjct: 7 VEQIESWIVDVPTIRPHKLSMTTMGCQSLVIVRLTRSDGICGIGEATTIGGLSYGVESPE 66
Query: 107 AMVKASEAC--EVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMP 164
A+ A +LK PA L ++ + G + G+ FA ++A+E AL+DA K++ +P
Sbjct: 67 AISSAITHYLTPLLKGQPADNLNALTARMNGAIKGNTFA--KSAIETALLDAQGKALGLP 124
Query: 165 LWRLFGG-VSNTITTDITIPIVSPAE-AAELASKYRKQGFTTLKLKVG-KNLKEDIEVLR 221
+ L GG + + T+ A+ AE + KLK+G + L D+ R
Sbjct: 125 VSALLGGALQTALPVLWTLASGDTAKDIAEGEKLLAEGRHRAFKLKIGARELATDLRHTR 184
Query: 222 AIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 280
AI A+ +S +D N+ + + +L MGV L EQPV D L +
Sbjct: 185 AIVEALGDRASIRVDVNQAWDAATGAKGCRELAAMGVD--LIEQPVSAHDNAALVRL--- 239
Query: 281 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNL 339
+ ++ ADE+ + D ++ + +K+AK G L + V +A+G+ L
Sbjct: 240 -SQQIETAILADEAVATAYDGYQLAQQGFTGAYALKIAKAGGPNSVLALARVAQAAGIGL 298
Query: 340 MIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGH 399
G M+E + + H + L ++ PLLL +D V + G
Sbjct: 299 YGGTMLEGTVGTVASLHAWSTLPLQWGTEMFGPLLLKDDIVSVPLTFADGQVALPQTPGL 358
Query: 400 G 400
G
Sbjct: 359 G 359
|
| >3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A Length = 382 | Back alignment and structure |
|---|
Score = 267 bits (685), Expect = 1e-86
Identities = 83/362 (22%), Positives = 153/362 (42%), Gaps = 17/362 (4%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
++ E +++P I P +A + V IR+ ++G G GE+ + + ++
Sbjct: 8 IESIETIIVDLPTIRPHKLAMHTMQNQTLVLIRLRCADGIEGLGESTTIGGLAYGNESPD 67
Query: 108 MVKA---SEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMP 164
+K +L A + + + + G+ FA ++ +E AL+DA K + +P
Sbjct: 68 SIKTNIDRFVAPLLIGQDASNINAAMLRLEQSIRGNTFA--KSGIESALLDAQGKRLGLP 125
Query: 165 LWRLFGG-VSNTITTDITIPIVSPAE-AAELASKYRKQGFTTLKLKVGK-NLKEDIEVLR 221
+ L GG V + + T+ A+ AE + KLK+G + D+ +
Sbjct: 126 VSELLGGRVRDALPVAWTLASGDTAKDIAEAQKMLDLRRHRIFKLKIGAGEVDRDLAHVI 185
Query: 222 AIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 280
AI+ A+ +S +D N+ + A+ L G+ L EQP+ R++ G+ +
Sbjct: 186 AIKKALGDSASVRVDVNQAWDEAVALRACRILGGNGID--LIEQPISRNNRAGMVRL--- 240
Query: 281 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNL 339
+ ADES ++D + + A V +K+AK G L + A+G+ L
Sbjct: 241 -NASSPAPIMADESIECVEDAFNLAREGAASVFALKIAKNGGPRATLRTAAIAEAAGIGL 299
Query: 340 MIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARG 398
G M+E + + H L + +L PLLL+ED + + + A G
Sbjct: 300 YGGTMLEGGIGTLASAHAFLTLNKLSWDTELFGPLLLTEDILAEPPVYRDFHLHVSKAPG 359
Query: 399 HG 400
G
Sbjct: 360 LG 361
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 Length = 370 | Back alignment and structure |
|---|
Score = 262 bits (673), Expect = 4e-85
Identities = 84/360 (23%), Positives = 161/360 (44%), Gaps = 18/360 (5%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVT--AEDQQTA 107
++VP P ++ + + + V ++++ + G VG GE + T +E +T
Sbjct: 5 AISTTIVDVPTRRPLQMSFTTVHKQSYVIVQVK-AGGLVGIGEGGSVGGPTWGSESAETI 63
Query: 108 MVKASEA-CEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
V +L A L ++ + G+ A +AA+++AL D A+++++ +
Sbjct: 64 KVIIDNYLAPLLVGKDASNLSQARVLMDRAVTGNLSA--KAAIDIALHDLKARALNLSIA 121
Query: 167 RLFGG-VSNTITTDITIPIVSPAE-AAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAI 223
L GG + +I T+ A + K+K+G + +D+E +R+I
Sbjct: 122 DLIGGTMRTSIPIAWTLASGDTARDIDSALEMIETRRHNRFKVKLGARTPAQDLEHIRSI 181
Query: 224 R-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAK 282
AV +S +D N+G+ Q A + +L E GV L EQPV R ++ L +
Sbjct: 182 VKAVGDRASVRVDVNQGWDEQTASIWIPRLEEAGVE--LVEQPVPRANFGALRRL----T 235
Query: 283 DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMI 341
++ GV++ ADES SL ++ + + D ++KL + G+ L++ V A+G++
Sbjct: 236 EQNGVAILADESLSSLSSAFELARDHAVDAFSLKLCNMGGIANTLKVAAVAEAAGISSYG 295
Query: 342 GGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 400
G M+++ + A H+ A L + +L P +L + E+ G G
Sbjct: 296 GTMLDSTVGTAAALHVYATLPSLPYGCELIGPWVLGDRLTQQDLEIKDFEVHLPLGSGLG 355
|
| >1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A* Length = 368 | Back alignment and structure |
|---|
Score = 261 bits (669), Expect = 2e-84
Identities = 84/359 (23%), Positives = 149/359 (41%), Gaps = 19/359 (5%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQ 105
+ E R + +PL+APF + E + +R G GWGE + P ++E
Sbjct: 3 LSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAG-EGWGECVTMAGPLYSSEYND 61
Query: 106 TAMVKASEAC-EVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMP 164
A L + + V ++A GH+ A + A+EMA++DA ++
Sbjct: 62 GAEHVLRHYLIPALLAAEDITAAKVTPLLA-KFKGHRMA--KGALEMAVLDAELRAHERS 118
Query: 165 LWRLFGGVSNTITTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAI 223
G V +++ +++ I+ + + ++ Y +G+ +KLK+ D+E +RA+
Sbjct: 119 FAAELGSVRDSVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIEPG--WDVEPVRAV 176
Query: 224 R-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAK 282
R D +DAN Y +A + L +L G+ L EQP+ +D G +
Sbjct: 177 RERFGDDVLLQVDANTAYTLGDAPQ-LARLDPFGLL--LIEQPLEEEDVLGHAEL----A 229
Query: 283 DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMI 341
+ + DES S +K ++NIK +V G L A + +V A G+ +
Sbjct: 230 RRIQTPICLDESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHGIPVWC 289
Query: 342 GGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 400
GGM+ET L L++ D + + + + +SG G G
Sbjct: 290 GGMIETGLGRAANVALASLPNFTLPGDTSASDRFYKTDITEPFVLSGGHLPVPTGPGLG 348
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} Length = 383 | Back alignment and structure |
|---|
Score = 260 bits (667), Expect = 6e-84
Identities = 96/362 (26%), Positives = 161/362 (44%), Gaps = 17/362 (4%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA--PVLPHVTAEDQQ 105
+Q+ E+R L+VPLI P AT+ + + + + L NG +G+GE P P E +
Sbjct: 8 IQKVESRILDVPLIRPHGFATTTSTEQHILLVSVHLENGVIGYGEGVVPGGPWWGGESVE 67
Query: 106 TAMVKASEA-CEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMP 164
T VL L + + ++ ++A +AAV++A+ DA A+S+++P
Sbjct: 68 TMKALVDGYLAPVLIGRAVSELAGIMADLERVVARARYA--KAAVDVAMHDAWARSLNVP 125
Query: 165 LWRLFGG-VSNTITTDITIPIVSPAE-AAELASKYRKQGFTTLKLKVGK-NLKEDIEVLR 221
+ L GG V + + + ++ AE+ + + G + KLK+G + ED +
Sbjct: 126 VRDLLGGTVRDKVDVTWALGVLPLDVAVAEIEERIEEFGNRSFKLKMGAGDPAEDTRRVA 185
Query: 222 AIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 280
+ V S +D N + + A+ L L E GV LFEQP DD E L ++
Sbjct: 186 ELAREVGDRVSLRIDINARWDRRTALHYLPILAEAGVE--LFEQPTPADDLETLREIT-- 241
Query: 281 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNL 339
+ VSV ADES + + +VK ADVI +K K G+L + +I + A GL
Sbjct: 242 --RRTNVSVMADESVWTPAEALAVVKAQAADVIALKTTKHGGLLESKKIAAIAEAGGLAC 299
Query: 340 MIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARG 398
+E + + +A + +L P LL + ++ +E G
Sbjct: 300 HGATSLEGPIGTAASLQFAASTKAISYGTELFGPQLLKDTYIVQEFEYKDGQVAIPQGPG 359
Query: 399 HG 400
G
Sbjct: 360 LG 361
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} Length = 397 | Back alignment and structure |
|---|
Score = 258 bits (662), Expect = 5e-83
Identities = 88/356 (24%), Positives = 150/356 (42%), Gaps = 25/356 (7%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA-PVLPHVTAEDQQT-- 106
+ E P++ P+ + + L +++ V +++ G VG +A E Q +
Sbjct: 7 KVEVIPISTPMKRAQLMRGATLARIDGVLLKLHSDEGLVGIADAGDTSSWYRGETQDSIT 66
Query: 107 AMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
+M+ A +VL + + G + L + A +A V+ AL D V K +P++
Sbjct: 67 SMICDFFAPKVLLGEDPTKIEKIVGRMDILTRDNNQA--KATVDFALHDLVGKRFGVPVY 124
Query: 167 RLFGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR- 224
+L GG I + + P AE A ++GF +KLK G LK DI ++ +R
Sbjct: 125 QLLGGKTIERIPLGLVLGAGEPEAVAEEALAVLREGFHFVKLKAGGPLKADIAMVAEVRR 184
Query: 225 AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDK 284
AV D +D N + +A+ + L + ++ EQP+ D +G+ + + K
Sbjct: 185 AVGDDVDLFIDINGAWTYDQALTTIRALEKYNLS--KIEQPLPAWDLDGMARL----RGK 238
Query: 285 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGG 343
+ ADES + L D+ I+ AD + IK K G+L A + + R + L ++ G
Sbjct: 239 VATPIYADESAQELHDLLAIINKGAADGLMIKTQKAGGLLKAQRWLTLARLANLPVICGC 298
Query: 344 MVETRLAMGFAGHLSAGL-----------GCFKFIDLDTPLLLSEDPVLDGYEVSG 388
MV + L A HL A G D + D L+ G
Sbjct: 299 MVGSGLEASPAAHLLAANDWIAQFPQENAGPLHIHDCLNSRDIDNDIALNVPRFEG 354
|
| >1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} SCOP: c.1.11.2 d.54.1.1 PDB: 2chr_A Length = 370 | Back alignment and structure |
|---|
Score = 253 bits (649), Expect = 2e-81
Identities = 86/361 (23%), Positives = 161/361 (44%), Gaps = 20/361 (5%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQT- 106
E ++VP P ++ + + Q V +R+ S G VG GE + P +AE +T
Sbjct: 5 AIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVY-SEGLVGVGEGGSVGGPVWSAECAETI 63
Query: 107 -AMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPL 165
+V+ A +L + +A + G+ A +AAVEMAL+D A+++ + +
Sbjct: 64 KIIVERYLAPHLLGTDA-FNVSGALQTMARAVTGNASA--KAAVEMALLDLKARALGVSI 120
Query: 166 WRLFGG-VSNTITTDITIPIVSPAE-AAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRA 222
L GG + + I T+ ++ K+K+G ++ ++D+ + A
Sbjct: 121 AELLGGPLRSAIPIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGFRSPQDDLIHMEA 180
Query: 223 IR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA 281
+ ++ + +D N+ + Q A + +L +GV L EQPV R++ + L +
Sbjct: 181 LSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGVE--LIEQPVGRENTQALRRL---- 234
Query: 282 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLM 340
D V++ ADES +L + + DV ++KL + GV +I V ASG+
Sbjct: 235 SDNNRVAIMADESLSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASGIASY 294
Query: 341 IGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGH 399
G M+++ + A L + + F +L P +L++ + E+ + GH
Sbjct: 295 GGTMLDSTIGTSVALQLYSTVPSLPFGCELIGPFVLADTLSHEPLEIRDYELQVPTGVGH 354
Query: 400 G 400
G
Sbjct: 355 G 355
|
| >3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia} Length = 400 | Back alignment and structure |
|---|
Score = 253 bits (649), Expect = 4e-81
Identities = 69/375 (18%), Positives = 140/375 (37%), Gaps = 34/375 (9%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQ 105
+ + +P+ PF I++ ++ + I G+GE+ P E +
Sbjct: 9 IDGVSLYEIVIPMKIPFQISSGTCYTRRSLVVEIR-EGDLFGYGESAPFEEPFYLGETLE 67
Query: 106 TAMVKASEAC-EVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMP 164
T V ++ +++ ++ + G+ FA R VE A D +AK +
Sbjct: 68 TTKVILKNHLLPMILGKEPLSIEEFNHLIKNGIRGNHFA--RCGVENAYWDLIAKKNKIS 125
Query: 165 LWRLFGG-------------VSNTITTDITIPIVSPA---EAAELASKYRKQGFTTLKLK 208
L + +N I + + I + ++G+ +K+K
Sbjct: 126 LKAMIEKKMKNLGVKQEYLASNNYIESGAALGIPEDGRIETLIHQVEESLQEGYRRIKIK 185
Query: 209 VGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 267
+ D+E L+ R AV DAN ++ + E + + + EQP+H
Sbjct: 186 IKPG--WDVEPLQETRRAVGDHFPLWTDANSSFELDQW-ETFKAMDAAKC--LFHEQPLH 240
Query: 268 RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGAL 326
+ L + ++ + DES S + + K ++++ NIK+ +V G+L A+
Sbjct: 241 YEALLDLKEL----GERIETPICLDESLISSRVAEFVAKLGISNIWNIKIQRVGGLLEAI 296
Query: 327 EIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTP-LLLSEDPVLDGYE 385
+I ++ +G+ L G M E+ L F L++ G D+ + L
Sbjct: 297 KIYKIATDNGIKLWGGTMPESGLGARFLISLASFRGFVFPADVAASEKWYGKGNDLVENT 356
Query: 386 VSGAVYKFTNARGHG 400
++ + G
Sbjct: 357 MTDGKIYVPDEPGAS 371
|
| >1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A Length = 375 | Back alignment and structure |
|---|
Score = 250 bits (640), Expect = 4e-80
Identities = 86/368 (23%), Positives = 145/368 (39%), Gaps = 19/368 (5%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA--PVLPHVTAEDQQ 105
++ AE +PL F + + V + I G G E P E
Sbjct: 10 IEAAEIVVARLPLKFRFETSFGVQTH-KVVPLLILHGEGVQGVAEGTMEARPMYREETIA 68
Query: 106 TAMVKASEAC-EVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMP 164
A+ + +V + G++ A RA VEMA D A+++ +P
Sbjct: 69 GALDLLRGTFLPAILGQTFANPEAVSDALGSY-RGNRMA--RAMVEMAAWDLWARTLGVP 125
Query: 165 LWRLFGGVSNTITTDITIPIVSPAEA-AELASKYRKQGFTTLKLKVGKNLKEDIEVLRAI 223
L L GG + +++ I + +A +L ++ +QG+ +KLK+ D++ +RA
Sbjct: 126 LGTLLGGHKEQVEVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIKPG--WDVQPVRAT 183
Query: 224 RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
R PD +DAN Y +A L +L E +T EQP+ DD +
Sbjct: 184 REAFPDIRLTVDANSAYTLADAGR-LRQLDEYDLT--YIEQPLAWDDLVDHAEL----AR 236
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIG 342
+ + DES S D +K + VIN+K+A+V G + + +V ++ G + G
Sbjct: 237 RIRTPLCLDESVASASDARKALALGAGGVINLKVARVGGHAESRRVHDVAQSFGAPVWCG 296
Query: 343 GMVETRLAMGFAGHLSAGLGCFKFIDL-DTPLLLSEDPVLDGYEVSGAVYKFTNARGHGG 401
GM+E+ + HLS D D + + E + G G
Sbjct: 297 GMLESGIGRAHNIHLSTLSNFRLPGDTSSASRYWERDLIQEPLEAVDGLMPVPQGPGTGV 356
Query: 402 FLHWDNIA 409
L + +A
Sbjct: 357 TLDREFLA 364
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} Length = 378 | Back alignment and structure |
|---|
Score = 247 bits (632), Expect = 8e-79
Identities = 71/341 (20%), Positives = 142/341 (41%), Gaps = 18/341 (5%)
Query: 50 RAENRPLNVPLIAPFTIA--TSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
R +++PL P+ ++ + + ++ +++E G GWGE H
Sbjct: 7 RITVYQVDLPLEHPYWLSGGRLKFELLDATLVKLETDAGITGWGEGTPWGHTYVPAHGPG 66
Query: 108 MVKASEA-CEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
+ E + L V + LPGH +A ++ ++MA D ++ +P+
Sbjct: 67 IRAGIETMAPFVLGLDPRRLLDVERAMDIALPGHLYA--KSPIDMACWDIAGQAAGLPIA 124
Query: 167 RLFGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR- 224
L GG ++ S E + +YR++G+ +K+G +++ DI +R +
Sbjct: 125 DLMGGGSRTPRPIASSVGAKSVEETRAVIDRYRQRGYVAHSVKIGGDVERDIARIRDVED 184
Query: 225 AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDK 284
P + D N G+ Q+A+ V+ ++ V+FEQP + + + +
Sbjct: 185 IREPGEIVLYDVNRGWTRQQALRVMRATEDLH---VMFEQPGE--TLDDIAAI----RPL 235
Query: 285 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGG 343
V+ DE +L D ++ + LA+V IKL +V G+ A + ++ G+++ +
Sbjct: 236 HSAPVSVDECLVTLQDAARVARDGLAEVFGIKLNRVGGLTRAARMRDIALTHGIDMFVMA 295
Query: 344 MVETRLAMGFAGHLSAGLGCFK-FIDLDTPLLLSEDPVLDG 383
+ LA A HL+A + +L+ D
Sbjct: 296 TGGSVLADAEALHLAATIPDHACHAVWACQDMLTVDIAGGR 336
|
| >3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans} Length = 377 | Back alignment and structure |
|---|
Score = 246 bits (631), Expect = 1e-78
Identities = 80/348 (22%), Positives = 140/348 (40%), Gaps = 15/348 (4%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRL-DQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQT 106
V+R + P+ + V+ V + + ++G VGWGEA T +
Sbjct: 8 VERIRIFLVESPIKMARLQGVGNVKGSVKRVLLEVTSADGIVGWGEAAPWEVFTGTPEAA 67
Query: 107 AMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
++ +P + + + +L GH A +AAVEMAL+D + K+ + +
Sbjct: 68 FSALDIYLRPLILGAPIKRVRELMARMDKMLVGHGEA--KAAVEMALLDILGKATGLSVA 125
Query: 167 RLFGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKN-LKEDIEVLRAIR 224
L GG V + I +I E G T K+K G E++ +L +R
Sbjct: 126 DLLGGRVRDRIPLSFSIADPDFDADLERMRAMVPAGHTVFKMKTGVKPHAEELRILETMR 185
Query: 225 -AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
LD N+ P A+++L + T EQPV R + + +
Sbjct: 186 GEFGERIDLRLDFNQALTPFGAMKILRDVDAFRPT--FIEQPVPRRHLDAMAGFA----A 239
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIG 342
+ ADESC D+ ++V+ AD I++K+ K G++ A ++ + +GL G
Sbjct: 240 ALDTPILADESCFDAVDLMEVVRRQAADAISVKIMKCGGLMKAQSLMAIADTAGLPGYGG 299
Query: 343 GMVETRLAMGFAGHLSAGLGCFKF-IDLDTP-LLLSEDPVLDGYEVSG 388
+ E +A+ L A + P +L+ED + + S
Sbjct: 300 TLWEGGIALAAGTQLIAATPGISLGCEFYMPHHVLTEDVLEERIANSA 347
|
| >2pmq_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, isomerase, PSI-2; HET: MSE; 1.72A {Roseovarius SP} Length = 377 | Back alignment and structure |
|---|
Score = 246 bits (630), Expect = 1e-78
Identities = 70/360 (19%), Positives = 157/360 (43%), Gaps = 21/360 (5%)
Query: 50 RAENRPLNVPLI-APFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAM 108
+ ++P++ P+ IA+ + + ++I +G +GWGE + AE
Sbjct: 7 EIQLFQHDLPVVNGPYRIASGDVWSLTTTIVKIIAEDGTIGWGETCPVGPTYAEAHAGGA 66
Query: 109 VKASEAC-EVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWR 167
+ A E L + A+ L + + LL GH +A ++A+++A+ D K + +P+
Sbjct: 67 LAALEVLASGLAGAEALPL-PLHTRMDSLLCGHNYA--KSALDIAVHDLWGKRLGVPVHE 123
Query: 168 LFGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKN-LKEDIEVLRAIR- 224
L GG +++++++ ++ ++ P EAA A + +++G++ L++K+G ++ DIE +R +
Sbjct: 124 LLGGALTDSVSSYYSLGVMEPDEAARQALEKQREGYSRLQVKLGARPIEIDIEAIRKVWE 183
Query: 225 -AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
+ D N G+ ++A+ + ++ + EQP + +E L + +
Sbjct: 184 AVRGTGIALAADGNRGWTTRDALRFSRECPDIP---FVMEQPCN--SFEDLEAI----RP 234
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIG 342
++ DE SL+ V +L D +K++++ G+ + A L
Sbjct: 235 LCHHALYMDEDGTSLNTVITAAATSLVDGFGMKVSRIGGLQHMRAFRDFCAARNLPHTCD 294
Query: 343 GMVETRLAMGFAGHLSAGLG--CFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 400
+ H+++ + + L P + +G + G + G G
Sbjct: 295 DAWGGDIVSAACTHIASTVLPRLMEGAWLAQPYVAEHYDAENGVRIEGGRIRVPQGPGLG 354
|
| >4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain protein; putative racemase, nysgrc, structural genomics, PSI-biology; 2.00A {Paracoccus denitrificans} Length = 391 | Back alignment and structure |
|---|
Score = 245 bits (627), Expect = 6e-78
Identities = 71/360 (19%), Positives = 142/360 (39%), Gaps = 20/360 (5%)
Query: 50 RAENRPLNVPLI-APFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQ-TA 107
++P+ P+TIA+S + ++ ++I +G GWGE + A A
Sbjct: 27 EIHVYAHDLPVKDGPYTIASSTVWSLQTTLVKIVADSGLAGWGETCPVGPTYAPSHALGA 86
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWR 167
+E L + + + + GLL GH +A +AA+++A D + K + +
Sbjct: 87 RAALAEMAPGLIGANPLQPLVLRRRMDGLLCGHNYA--KAAIDIAAYDLMGKHYGVRVAD 144
Query: 168 LFGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKN-LKEDIEVLRAIRA 225
L GG + + + I P E A +A++ +GF L++K+G ++ DIE +R +
Sbjct: 145 LLGGVAAERVPSYYATGIGQPDEIARIAAEKVAEGFPRLQIKIGGRPVEIDIETVRKVWE 204
Query: 226 --VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
+ +D N ++A+ + + E+ + EQP + E + + +
Sbjct: 205 RIRGTGTRLAVDGNRSLPSRDALRLSRECPEIP---FVLEQPC--NTLEEIAAI----RG 255
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIG 342
+ + DES L V + L D +KL ++ G+ ++ A L
Sbjct: 256 RVQHGIYLDESGEDLSTVIRAAGQGLCDGFGMKLTRIGGLQQMAAFRDICEARALPHSCD 315
Query: 343 GMVETRLAMGFAGHLSAGLG--CFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 400
+ H+ A + + + + P + +G ++G G G
Sbjct: 316 DAWGGDIIAAACTHIGATVQPRLNEGVWVAQPYIAQPYDEENGIRIAGGHIDLPKGPGLG 375
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B Length = 378 | Back alignment and structure |
|---|
Score = 241 bits (616), Expect = 2e-76
Identities = 78/342 (22%), Positives = 134/342 (39%), Gaps = 20/342 (5%)
Query: 50 RAENRPLNVPLIAPFTIA--TSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQ-T 106
R L++PL P+ ++ + D++++ +RI+ G GWGE H
Sbjct: 7 RLTVFHLDLPLAKPYWLSGGRLKFDRLDSTYLRIDTDEGVTGWGEGCPWGHSYLPAHGPG 66
Query: 107 AMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
+ L +L V V+ LPGH + ++ ++MA D + + +PLW
Sbjct: 67 LRAGIATLAPHLLGLDPRSLDHVNRVMDLQLPGHSYV--KSPIDMACWDILGQVAGLPLW 124
Query: 167 RLFGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIR 224
+L GG + + + +I +P + L ++ QG+ T K+G + +DI + AI
Sbjct: 125 QLLGGEAATPVPINSSISTGTPDQMLGLIAEAAAQGYRTHSAKIGGSDPAQDIARIEAIS 184
Query: 225 -AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
+ D N + P AVEVL + EQP D HV
Sbjct: 185 AGLPDGHRVTFDVNRAWTPAIAVEVLNSVRARD----WIEQPCQTLD--QCAHV----AR 234
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIG 342
+ + DE D + + IK +V G+ A +I + + G + I
Sbjct: 235 RVANPIMLDECLHEFSDHLAAWSRGACEGVKIKPNRVGGLTRARQIRDFGVSVGWQMHIE 294
Query: 343 GMVETRLAMGFAGHLSAGL-GCFKFIDLDTPLLLSEDPVLDG 383
+ T LA A HL+A + L++DP+
Sbjct: 295 DVGGTALADTAALHLAASTPEANRLASWLGHAHLADDPIPGQ 336
|
| >2okt_A OSB synthetase, O-succinylbenzoic acid synthetase; enolase, structural genom protein structure initiative, PSI, nysgrc; 1.30A {Staphylococcus aureus subsp} PDB: 2ola_A 3h70_A Length = 342 | Back alignment and structure |
|---|
Score = 238 bits (608), Expect = 1e-75
Identities = 62/344 (18%), Positives = 114/344 (33%), Gaps = 34/344 (9%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQ 105
+ + P + L + + I + G +GE E
Sbjct: 4 LTALHFYKYSEPFKSQIVTPKVTLTHRDCLFIELIDDKGNAYFGECNAFQTDWYDHETIA 63
Query: 106 TAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPL 165
+ + E + + +V L A RA + MAL +P
Sbjct: 64 SVKHVIEQWFEDNRNKSFETYEAALKLVDS-LENTPAA--RATIVMALYQMFHV---LPS 117
Query: 166 WRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRA 225
+ + G T +S + + T +KLK + + +R +R
Sbjct: 118 FSVAYG--------ATASGLSNKQLES----LKATKPTRIKLKWT---PQIMHQIRVLRE 162
Query: 226 VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF 285
+ ++DANE Q+ + L+ L V E+P D L V+
Sbjct: 163 LDFHFQLVIDANESLDRQDFTQ-LQLLAREQVL--YIEEPF--KDISMLDEVAD----GT 213
Query: 286 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGM 344
+A DE SL D+ +++ V+ +K ++G + I+ +++ G ++IGGM
Sbjct: 214 IPPIALDEKATSLLDIINLIELYNVKVVVLKPFRLGGIDKVQTAIDTLKSHGAKVVIGGM 273
Query: 345 VETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSG 388
E L+ F L A G + +D V +
Sbjct: 274 YEYGLSRYFTAML-ARKGDYPGDVTPAGYYFEQDVVAHSGILKE 316
|
| >3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A Length = 386 | Back alignment and structure |
|---|
Score = 233 bits (596), Expect = 2e-73
Identities = 65/351 (18%), Positives = 133/351 (37%), Gaps = 22/351 (6%)
Query: 50 RAENRPLNVPLIAPFTIATS--RLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
R + ++P+ + + + IE G GWGE+
Sbjct: 7 RIDIHRTDLPVRGGVYRLSGGREYHSYDATIVSIETDTGLTGWGESTPFGSTYIAAHAGG 66
Query: 108 MVKASEA-CEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
A E + ++ + L GH+ A RAA+++A D A++ +PL
Sbjct: 67 TRAALELLAPAILGMDPRQHDRIWDRMRDTLKGHRDA--RAALDIACWDIAAQAAGLPLC 124
Query: 167 RLFGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNL-----KEDIEVL 220
+ GG V+ + +I +P +++R QGF +K+G + D E +
Sbjct: 125 DMTGGRVAGPVPVISSIGGDTPEAMRAKVARHRAQGFKGHSIKIGASEAEGGPALDAERI 184
Query: 221 RAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 279
A P ++ DAN G + A+ +L L ++ E P W +
Sbjct: 185 TACLADRQPGEWYLADANNGLTVEHALRMLSLLPPGL--DIVLEAPC--ASWAETKSL-- 238
Query: 280 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLN 338
+ + + + DE ++ D+ ++ +L D + +K++K G+ L + A+G+
Sbjct: 239 --RARCALPLLLDELIQTETDLIAAIRDDLCDGVGLKVSKQGGITPMLRQRAIAAAAGMV 296
Query: 339 LMIGGMVETRLAMGFAGHLSAGLGCFK-FIDLDTPLLLSEDPVLDGYEVSG 388
+ + V ++++ HL+ LDT + + + +
Sbjct: 297 MSVQDTVGSQISFAAILHLAQSTPRHLLRCALDTRAMTTAELAEIDAPLRD 347
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} Length = 371 | Back alignment and structure |
|---|
Score = 230 bits (588), Expect = 3e-72
Identities = 62/342 (18%), Positives = 128/342 (37%), Gaps = 17/342 (4%)
Query: 54 RPLNVPLIAP--FTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA 111
+++P + A + +RI G GWGE+ +
Sbjct: 12 FQVDLPYSGGVYYLSAGREYRSFDATIVRITTDTGIEGWGESTPFGSNYIASHPRGVRAG 71
Query: 112 -SEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG 170
+ L + + + L GH+ A + A+++A D KSV +P+ L G
Sbjct: 72 IATMAPSLIGLDPRRVDRINDAMDDALLGHEDA--KTAIDVACWDIFGKSVGLPVCELLG 129
Query: 171 G-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHP 228
G + + +I + P + +KYR +G+ +K+ D + + A P
Sbjct: 130 GRTNTRLPLISSIYVGEPEDMRARVAKYRAKGYKGQSVKISGEPVTDAKRITAALANQQP 189
Query: 229 DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288
D FI+DAN + A+ +L L E P W + + K +
Sbjct: 190 DEFFIVDANGKLSVETALRLLRLLPHGL--DFALEAPCA--TWRECISL----RRKTDIP 241
Query: 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVET 347
+ DE + + KI+ + A+ I++K++K G+ ++ A+G ++ + +
Sbjct: 242 IIYDELATNEMSIVKILADDAAEGIDLKISKAGGLTRGRRQRDICLAAGYSVSVQETCGS 301
Query: 348 RLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSG 388
+A HL+ + L+ +++ +++
Sbjct: 302 DIAFAAIVHLAQTIPERSLRCILECRDMVTVKTADGAFDIQD 343
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} Length = 379 | Back alignment and structure |
|---|
Score = 229 bits (587), Expect = 5e-72
Identities = 61/342 (17%), Positives = 126/342 (36%), Gaps = 18/342 (5%)
Query: 54 RPLNVPLIAPF--TIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA 111
++P + A + + + I+ G G GE +
Sbjct: 11 YKTDLPYVDGSYGWGAGNAITVARASVVVIDTDAGLQGCGEFTPCGENYMIAHSEGVDAF 70
Query: 112 SEA-CEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG 170
+ L + + ++ L+ GH +A +A + A D + ++ P+W L G
Sbjct: 71 ARLAAPQLLGQDPRQVARMERLMDHLVQGHGYA--KAPFDAAFWDILGQATGQPVWMLLG 128
Query: 171 G-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHP 228
G + + P S AE +++R G+ ++KVG + + DI+ +RA + P
Sbjct: 129 GKLCDGAPMYRVAPQRSEAETRAELARHRAAGYRQFQIKVGADWQSDIDRIRACLPLLEP 188
Query: 229 DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288
+ DAN+G++ A+ + ++ + EQP +E V +
Sbjct: 189 GEKAMADANQGWRVDNAIRLARATRDLD---YILEQPCR--SYEECQQV----RRVADQP 239
Query: 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVET 347
+ DE L ++IV A++ +K++ + G+ A + + + + ++
Sbjct: 240 MKLDECVTGLHMAQRIVADRGAEICCLKISNLGGLSKARRTRDFLIDNRMPVVAEDSWGG 299
Query: 348 RLAMGFAGHLSAGLGCFKFID-LDTPLLLSEDPVLDGYEVSG 388
+A H +A I+ D + L G V
Sbjct: 300 EIASAAVAHFAASTPEEFLINSTDLMNYNTRSTGLGGPTVHQ 341
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} Length = 384 | Back alignment and structure |
|---|
Score = 223 bits (571), Expect = 1e-69
Identities = 84/341 (24%), Positives = 138/341 (40%), Gaps = 24/341 (7%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
RPL +PL P+ + + I IE +G VG GE V P T A++
Sbjct: 12 RPLVLPLKQPYHWSYGIRESFAVNLIEIEADDGTVGIGECTVAPDQTGT---AAILY--R 66
Query: 114 ACEVLK-ESP--------AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMP 164
+ L SP + G A ++ + ++MA+ D K +P
Sbjct: 67 LAKHLVGHSPHDVAPLIARIFHQEYLGHGANIMRAANQI--FSGIDMAMWDLQGKLAGLP 124
Query: 165 LWRLFGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAI 223
+ +L GG + + + E A A+ QG LKVG+ K D+E+ A+
Sbjct: 125 VHQLLGGAHRKAVGYFYFLQGETAEELARDAAVGHAQGERVFYLKVGRGEKLDLEITAAV 184
Query: 224 RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
R D+ LDANEG+ +A+ + KL + EQP + HV +
Sbjct: 185 RGEIGDARLRLDANEGWSVHDAINMCRKLEKYD--IEFIEQPTVSWSIPAMAHVR----E 238
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIG 342
K G+ + AD++ +L DV +I + AD+I I ++ G+ ++ V A+GL + I
Sbjct: 239 KVGIPIVADQAAFTLYDVYEICRQRAADMICIGPREIGGIQPMMKAAAVAEAAGLKICIH 298
Query: 343 GMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDG 383
T + H+ + + L+ ED V
Sbjct: 299 SSFTTGITTCAEHHIGLAIPNLDDGNQIMWQLVQEDIVSSP 339
|
| >1r6w_A OSB synthase, O-succinylbenzoate synthase, OSBS; enolase superfamily, TIM barrel, capping alpha+beta domain, lyase; HET: 164; 1.62A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 PDB: 1fhv_A* 1fhu_A 2ofj_A 3gc2_A* Length = 322 | Back alignment and structure |
|---|
Score = 219 bits (561), Expect = 5e-69
Identities = 64/335 (19%), Positives = 108/335 (32%), Gaps = 39/335 (11%)
Query: 49 QRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAM 108
+ A+ +P+ A + RL + + + + GWGE LP + E + A
Sbjct: 4 RSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCLR-EGEREGWGEISPLPGFSQETWEEAQ 62
Query: 109 VKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRL 168
+AG Q SV V AL + +R
Sbjct: 63 SVLLAWVN--------------NWLAGDCELPQMPSVAFGVSCALAELTDTLPQAANYRA 108
Query: 169 FGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVH 227
+ P + + G K++VG D V+ +
Sbjct: 109 -----------APLCNGDPDDLILKLA--DMPGEKVAKVRVGLYEAVRDGMVVNLLLEAI 155
Query: 228 PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPV-LFEQPVHRDDWEGLGHVSHIAKDKFG 286
PD LDAN + P + + + + + E+P D + G
Sbjct: 156 PDLHLRLDANRAWTPLKGQQFAKYVNPDYRDRIAFLEEPCKTRDDSRA------FARETG 209
Query: 287 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV 345
+++A DES R D +G + IK G + E ++ A GL +I +
Sbjct: 210 IAIAWDESLREPDFAFVAEEG--VRAVVIKPTLTGSLEKVREQVQAAHALGLTAVISSSI 267
Query: 346 ETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPV 380
E+ L + ++A L LDT L+ V
Sbjct: 268 ESSLGLTQLARIAAWLTPDTIPGLDTLDLMQAQQV 302
|
| >3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A* Length = 391 | Back alignment and structure |
|---|
Score = 215 bits (550), Expect = 2e-66
Identities = 66/354 (18%), Positives = 118/354 (33%), Gaps = 31/354 (8%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
E + +P F ++V ++I G G GE H+ +
Sbjct: 5 DLELHAVGIPRHTGFVN--------KHVIVKIHTDEGLTGIGEMSDFSHLPLYSVDLHDL 56
Query: 110 KASEACEVLKESPA------MALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSM 163
K +L ++P L F F R ++ AL D AK + +
Sbjct: 57 KQGLLSILLGQNPFDLMKINKELTDNFPETMYYYEKGSFI--RNGIDNALHDLCAKYLDI 114
Query: 164 PLWRLFGG-VSNTITTDITI----PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIE 218
+ GG V I I ++ + +QGF +L VGKNL D E
Sbjct: 115 SVSDFLGGRVKEKIKVCYPIFRHRFSEEVESNLDVVRQKLEQGFDVFRLYVGKNLDADEE 174
Query: 219 VLRAIR-AVHPDSSF-ILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGH 276
L ++ D + ++A +++L + + + E P R+D++GL
Sbjct: 175 FLSRVKEEFGSRVRIKSYDFSHLLNWKDAHRAIKRLTKYDLGLEMIESPAPRNDFDGLYQ 234
Query: 277 VSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRAS 335
+ E S ++++K + D+ NI + G+ A + +
Sbjct: 235 LRL------KTDYPISEHVWSFKQQQEMIKKDAIDIFNISPVFIGGLTSAKKAAYAAEVA 288
Query: 336 GLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI-DLDTPLLLSEDPVLDGYEVSG 388
++++G E + HL L D P L D V +
Sbjct: 289 SKDVVLGTTQELSVGTAAMAHLGCSLTNINHTSDPTGPELYVGDVVKNRVTYKD 342
|
| >3caw_A O-succinylbenzoate synthase; structural genomics, PSI-2, NYSGXRC, target 9462A, protein structure initiative; 1.87A {Bdellovibrio bacteriovorus HD100} Length = 330 | Back alignment and structure |
|---|
Score = 198 bits (504), Expect = 2e-60
Identities = 53/357 (14%), Positives = 112/357 (31%), Gaps = 51/357 (14%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
+ P + + AT+ + E V +++E ++G G+ + P + + +
Sbjct: 3 KISYSPYTLKPVQSLNAATAATAR-EGVLLKVEWNDGLYGFADLHPWPELGDLSLEEQL- 60
Query: 110 KASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLF 169
+ L G + ++ +A DA+ + ++
Sbjct: 61 ------------------------SDLRMGRMTTQIEQSIWLARRDALLRKEKKHVFDG- 95
Query: 170 GGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPD 229
I + + + L + +G+ T+K+K+G++L+++ ++L I A
Sbjct: 96 ---GEKIKNNYLLSHFQDLKPGFLD-GLKNEGYNTVKVKMGRDLQKEADMLTHIAA--SG 149
Query: 230 SSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF-EQPVHRDDWEGLGHVSHIAKDKFGVS 288
LD N Q + + L + + E P D + +
Sbjct: 150 MRMRLDFNALGSWQTFEKFMVNLPLTVRPLIEYVEDPFPFDF-HAW------GEARKLAK 202
Query: 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETR 348
+A D + K + DVI IK AK + + + L L + ++
Sbjct: 203 IALDNQYDKVPWGK--IASAPFDVIVIKPAK---TDVDKAVAQCQKWNLKLAVTSYMDHP 257
Query: 349 LAMGFAGHLSAGL-----GCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 400
+ + A ++ L T L D G G G
Sbjct: 258 VGVVHAVGVAMELKDKYGDMILESGCLTHRLYQMDSFAAELSTQGPYLLKNKGTGVG 314
|
| >1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A {Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB: 1kd0_A* 3zvi_A 3zvh_A Length = 413 | Back alignment and structure |
|---|
Score = 194 bits (494), Expect = 4e-58
Identities = 58/369 (15%), Positives = 127/369 (34%), Gaps = 50/369 (13%)
Query: 56 LNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL---------PHVTAEDQQT 106
+ FT + E++++ + L +G V G+ + P A+D
Sbjct: 35 TGSTVTEGFTQVRQK---GESISVLLVLEDGQVAHGDCAAVQYSGAGGRDPLFLAKDFIP 91
Query: 107 AMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQF--ASVRAAVEMALIDAVAKSVSMP 164
+ K E L + + ++R + A++DAVAK+ +
Sbjct: 92 VIEK--EIAPKLIGREITNFKPMAEEFDKMTVNGNRLHTAIRYGITQAILDAVAKTRKVT 149
Query: 165 LWRLFGGVSNTITTDITIPI--VSPAEAAELASKYRKQG--------FTTLKLKVGKNLK 214
+ + N +P+ S + + K + ++ K+G +
Sbjct: 150 MAEVIRDEYNPGAEINAVPVFAQSGDDRYDNVDKMIIKEADVLPHALINNVEEKLGLKGE 209
Query: 215 EDIEVLRAIRA--------------VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVT-P 259
+ +E ++ +R H D + A + + ++ L E
Sbjct: 210 KLLEYVKWLRDRIIKLRVREDYAPIFHIDVYGTIGAAFDVDIKAMADYIQTLAEAAKPFH 269
Query: 260 VLFEQPVHRDD----WEGLGHV-SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 314
+ E P+ +D E + + + + + ADE C +++DVK ++
Sbjct: 270 LRIEGPMDVEDRQKQMEAMRDLRAELDGRGVDAELVADEWCNTVEDVKFFTDNKAGHMVQ 329
Query: 315 IKLAKVG-VLGALEIIEVVRASGLNLMIGG-MVETRLAMGFAGHLSAGLGCFKFIDLDTP 372
IK +G V + I +A+G+ GG ET + ++ G + L P
Sbjct: 330 IKTPDLGGVNNIADAIMYCKANGMGAYCGGTCNETNRSAEVTTNIGMACGARQV--LAKP 387
Query: 373 LLLSEDPVL 381
+ ++ ++
Sbjct: 388 GMGVDEGMM 396
|
| >2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics, protein structure initiative; 1.60A {Thermobifida fusca} PDB: 2qvh_A* Length = 327 | Back alignment and structure |
|---|
Score = 191 bits (488), Expect = 5e-58
Identities = 57/244 (23%), Positives = 96/244 (39%), Gaps = 14/244 (5%)
Query: 147 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLK 206
E A A + W V +T+ + T+P V P EAA + +
Sbjct: 43 GPRECARWWAACYEAAELGW--PAPVRDTVPVNATVPAVGPEEAARIVASSGCTTAKVKV 100
Query: 207 LKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQP 265
+ G++ D+ + A+R A+ P +D N + AV ++ L + EQP
Sbjct: 101 AERGQSEANDVARVEAVRDALGPRGRVRIDVNGAWDVDTAVRMIRLLDRFELE--YVEQP 158
Query: 266 VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGA 325
+ L V + + V +AADES R +D ++ ADV+ +K+ +G G
Sbjct: 159 C--ATVDELAEV----RRRVSVPIAADESIRRAEDPLRVRDAEAADVVVLKVQPLG--GV 210
Query: 326 LEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGY 384
+ + GL +++ VET + + L+A L + L T LL D D
Sbjct: 211 RAALRLAEECGLPVVVSSAVETSVGLAAGVALAAALPELPYACGLATLRLLHADVCDDPL 270
Query: 385 EVSG 388
Sbjct: 271 LPVH 274
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} Length = 389 | Back alignment and structure |
|---|
Score = 192 bits (491), Expect = 1e-57
Identities = 72/361 (19%), Positives = 129/361 (35%), Gaps = 20/361 (5%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
+ R D V A+ + +G VG G L + + Q+ V E
Sbjct: 11 TRFQFARDRVIGDSQVRADDVNVAALELVSESGEVGLGFIQTLFNPLPDQQEIESVFEHE 70
Query: 114 ACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVS 173
LK + A+AL G AV++AL D AK +PL L G
Sbjct: 71 VWPSLKGNRAIALVHRVNRPRGGNQRAYSLPFHEAVQVALWDLAAKEAGLPLHVLLGSRR 130
Query: 174 NTI---TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIR-AVHP 228
N + + + + L S G++ K+KVG + D+ L ++ V
Sbjct: 131 NRVKAYASGLDFH-LDDDAFVSLFSHAASIGYSAFKIKVGHRDFDRDLRRLELLKTCVPA 189
Query: 229 DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288
S ++D NE + +EA+ L + E G + E P+ R D +GL + + +
Sbjct: 190 GSKVMIDPNEAWTSKEALTKLVAIREAGHDLLWVEDPILRHDHDGLRTL----RHAVTWT 245
Query: 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETR 348
L + +++ + AD++N+ V + I + G+ + IG
Sbjct: 246 QINSGEYLDLQGKRLLLEAHAADILNV---HGQVTDVMRIGWLAAELGIPISIGNT---- 298
Query: 349 LAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408
+ H++ L ++++ + V E+ + GHG L
Sbjct: 299 -FLEAGVHMAVALPEVEWLEYSFQNF--DHLVEQPIEIRDGYAYAPDRPGHGLVLSEKAR 355
Query: 409 A 409
Sbjct: 356 G 356
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A Length = 359 | Back alignment and structure |
|---|
Score = 181 bits (462), Expect = 7e-54
Identities = 71/345 (20%), Positives = 126/345 (36%), Gaps = 34/345 (9%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
R +NVPL P A + V I + S G VG V + + + +
Sbjct: 12 RAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYTPVALKSLKQLL---DD 68
Query: 114 ACEVLKESPA--------MALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPL 165
++ P +A GL+ A ++MA DA+ K PL
Sbjct: 69 MAAMIVNEPLAPVSLEAMLAKRFCLAGYTGLI-----RMAAAGIDMAAWDALGKVHETPL 123
Query: 166 WRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIR 224
+L G + + + + A E A + GF +K ++G L +D+ V+R+IR
Sbjct: 124 VKLLGANARPVQAYDSHSLDGVKLATERAVTAAELGFRAVKTRIGYPALDQDLAVVRSIR 183
Query: 225 -AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
AV D ++D N+ A++ + L + G E+P + D+EG + +
Sbjct: 184 QAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEG--VTWIEEPTLQHDYEGHQRI----QS 237
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIG 342
K V V E+ +++ K + + K+ GV G + + + G+ +
Sbjct: 238 KLNVPVQMGENWLGPEEMFKALSIGACRLAMPDAMKIGGVTGWIRASALAQQFGIPMSSH 297
Query: 343 GMVETRLAMGFAGHLSAGL---GCFKFIDLDTPLLLSEDPVLDGY 384
E HL A + +DL ++ G
Sbjct: 298 LFQEISA------HLLAATPTAHWLERLDLAGSVIEPTLTFEGGN 336
|
| >4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A Length = 398 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 3e-53
Identities = 70/349 (20%), Positives = 125/349 (35%), Gaps = 31/349 (8%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
+N+PL+ PFT + +R+ +G GWGE V A ++ A
Sbjct: 32 WVVNLPLVNPFTSSFETKTGETRTVVRVRTDSGVEGWGETMWGAPVAAIVRRMA------ 85
Query: 114 ACEVLKESPAMALGSVFGVVAGLLPGH--QFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171
L + AL + + + + AAV++A DA+ K+ + L GG
Sbjct: 86 --PDLIGTSPFALEAFHRKQHMVPFFYGYLGYAAIAAVDVACWDAMGKATGQSVTDLLGG 143
Query: 172 VSNT----------ITTDITIPIVSPAEAAELASKYRKQ-GFTTLKLKVGKNLKEDIEVL 220
P P AE A + ++ GF +KLK + D+ +L
Sbjct: 144 AVRDEVPITALITRADAPGATPADLPKAMAEHAVRVVEEGGFDAVKLKGTTDCAGDVAIL 203
Query: 221 RAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 280
RA+R P + +D N + ++V L E+ E P EG+ V
Sbjct: 204 RAVREALPGVNLRVDPNAAWSVPDSVRAGIALEELD--LEYLEDPCV--GIEGMAQV--- 256
Query: 281 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNL 339
K K + + + +D ++ N DVI+ + K G+ + GL +
Sbjct: 257 -KAKVRIPLCTNMCVVRFEDFAPAMRLNAVDVIHGDVYKWGGIAATKALAAHCETFGLGM 315
Query: 340 MIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSG 388
+ E +A + + +D+ L D +++ +
Sbjct: 316 NLHSGGELGIATAAHLAVVSSTPVL-SRAIDSMYYLHADDIIEPLHLEN 363
|
| >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} Length = 392 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 3e-52
Identities = 62/319 (19%), Positives = 118/319 (36%), Gaps = 17/319 (5%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
R P+ P + + V + +E S+G VGWGE + + +V
Sbjct: 14 RVRAHVFRYPVSTPVKTSFGTMHDRPAVLVEVEDSDGAVGWGEVWCNFPACGAEHRARLV 73
Query: 110 KASEACEVLKESPAMALG-------SVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVS 162
+ A + + A + A A +++AL D A+
Sbjct: 74 ETVLAPLLTARAFADPAQAFAHLEARTAVLAIQTGEPGPLAQAIAGLDIALCDLAARRAG 133
Query: 163 MPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRA 222
PLW GG + I + ++P ++ ++ +G+ KLKVG + D+
Sbjct: 134 QPLWAWLGGSGDRIGVYASG--INPENPEDVVARKAAEGYRAFKLKVGFDDARDVRNALH 191
Query: 223 IR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA 281
+R + + + DAN+G+ A ++ ++L E+P+ D + +A
Sbjct: 192 VRELLGAATPLMADANQGWDLPRARQMAQRLGPAQ--LDWLEEPLRADRPA--AEWAELA 247
Query: 282 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLM 340
+ +A E+ + + + V+ LAK G G L + V A+GL
Sbjct: 248 -QAAPMPLAGGENIAGVAAFETALAARSLRVMQPDLAKWGGFSGCLPVARAVVAAGL-RY 305
Query: 341 IGGMVETRLAMGFAGHLSA 359
+ + + + HL A
Sbjct: 306 CPHYLGAGIGLQASAHLLA 324
|
| >3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199} Length = 390 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 5e-44
Identities = 73/358 (20%), Positives = 138/358 (38%), Gaps = 50/358 (13%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA-PVLPHVTAEDQQTAMVK 110
RP+ + L P T + + + I IE G G P +P +
Sbjct: 34 TARPVLLKLQRPVTARIATIPDWPLILIDIETEEGVPGRAYLEPYVPKAMK----YLVPA 89
Query: 111 ASEACEVLKESPA--------MALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVS 162
+ ++L P F AGL + V+MA+ DA+A++ +
Sbjct: 90 LHDMSDMLAGQPLAPAEIYDKTRKSLHFVGYAGLS-----MIAASGVDMAVWDALARAAN 144
Query: 163 MPLWRLFGGVSNTITTDITI------PIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKE 215
MPL L GG ++ + P AEA EL ++ + GF LKL++G+ +
Sbjct: 145 MPLCTLLGGTPGSVKAYNSNGLWLKSPAEVAAEAVELKAEGQGTGFKGLKLRMGRDDPAV 204
Query: 216 DIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGL 274
DIE A+ AV D++ ++D N+G EA+ ++ ++G E+PV D+++G
Sbjct: 205 DIETAEAVWDAVGRDTALMVDFNQGLDMAEAMHRTRQIDDLG--LEWIEEPVVYDNFDGY 262
Query: 275 GHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVR 333
+ + + E+ ++ + ++ D++ ++ GV G + V
Sbjct: 263 AQL----RHDLKTPLMIGENFYGPREMHQALQAGACDLVMPDFMRIGGVSGWMRAAGVAG 318
Query: 334 ASGLNLMIGGMVETRLAMGFAGHLSAGLGC-------FKFIDLDTPLLLSEDPVLDGY 384
A G+ ++ + A + ++ P+L + DG
Sbjct: 319 AWGI----------PMSTHLYPEVGAHVMRVTETAHWLEWQSWADPILQEPYALSDGD 366
|
| >3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A* Length = 383 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 3e-43
Identities = 64/345 (18%), Positives = 124/345 (35%), Gaps = 33/345 (9%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
R + P+ P A +D V I + G G + + +
Sbjct: 35 RAVITPMKRPLRNAFGVIDSGPLVLIDVTTDQGVTGHSYLFAYTRLALK--PLVHLVEDI 92
Query: 114 ACEVLKESP-------AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
E+ ++ AM GL+ + ++MA DA+ + P+
Sbjct: 93 GRELAGKALVPVDLMKAMDAKFRLLGWQGLV-----GMAVSGLDMAFWDALGQLAGKPVV 147
Query: 167 RLFGGVSNTITT-DITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIR 224
L GG + I D + + + L + + GF +K K G +L D +++ +R
Sbjct: 148 ELLGGSARPIPAYDSYGVLDARDDERTLRTACDEHGFRAIKSKGGHGDLATDEAMIKGLR 207
Query: 225 -AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
+ PD + +LD N+ P EA + +L + E+PV +++ G V ++
Sbjct: 208 ALLGPDIALMLDFNQSLDPAEATRRIARLADYD--LTWIEEPVPQENLSGHAAV----RE 261
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIG 342
+ + + A E+ + + +D I L KV G+ G L + A+ + +
Sbjct: 262 RSEIPIQAGENWWFPRGFAEAIAAGASDFIMPDLMKVGGITGWLNVAGQADAASIPMSSH 321
Query: 343 GMVETRLAMGFAGHLSAGLGCFK---FIDLDTPLLLSEDPVLDGY 384
+ + H+ +D +L V+DG
Sbjct: 322 IL------PEASAHVLPVTPTAHFLEVLDFAGAILTEPLRVIDGK 360
|
| >3vc5_A Mandelate racemase/muconate lactonizing protein; dehydratase, magnesium binding, enzyme function initiative, enolase, isomerase; 1.50A {Thermobispora bispora} PDB: 3vc6_A 4dhg_A Length = 441 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 1e-41
Identities = 61/358 (17%), Positives = 114/358 (31%), Gaps = 38/358 (10%)
Query: 55 PLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA-MVKASE 113
P+ A + + G G GE + + A + +
Sbjct: 32 PVAFRDPPLLNAAGVHQPWALRTIVEVVTDEGITGLGETYGDLAHLEQVRAAAARLPGLD 91
Query: 114 ACE-------VLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
V A + + G+ V AA E+A +D K+ P+
Sbjct: 92 VYALHRIYRRVADVVGANIVTDMHGLTGSSSRVKTVDRVFAAFEVACLDIQGKAAGRPVA 151
Query: 167 RLFGG-----------------VSNTITTDITIPIVSPAE-AAELASKYRKQGFTTLKLK 208
L GG D P + P A+ + GF ++KLK
Sbjct: 152 DLLGGKVRDAVPYSAYLFYKWAGHPGKPEDRFGPALDPDGIVAQARLLIGEYGFRSIKLK 211
Query: 209 VG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 267
G +++ E ++A+R P LD N + + ++ V L + E P
Sbjct: 212 GGVFPPEQEAEAIQALRDAFPGLPLRLDPNAAWTVETSIRVGRALDGV---LEYLEDPT- 267
Query: 268 RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGAL 326
+G+ V+ + + +A + + + + V+ V+ I G++ +
Sbjct: 268 -PGIDGMARVAA----EVPMPLATNMCVVTPEHLPAAVERRPIGVLLIDHHYWGGLVRSA 322
Query: 327 EIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGL-GCFKFIDLDTPLLLSEDPVLDG 383
I + G+ L + +++ HL+A D TP +D V G
Sbjct: 323 HIATLCATFGIELSMHSNSHLGISLAAMTHLAAATPAITHACDTHTPWQDGQDVVAPG 380
|
| >1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1 PDB: 1kkr_A* Length = 413 | Back alignment and structure |
|---|
Score = 144 bits (364), Expect = 3e-39
Identities = 55/340 (16%), Positives = 107/340 (31%), Gaps = 42/340 (12%)
Query: 61 IAPFTIATSRLDQV-ENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK 119
P T + + Q E V++++ L NG V G+ + + A + + +
Sbjct: 36 GDPVTPGFTSVRQAGECVSVQLILENGAVAVGDCAAVQYSGAGGRDPLFLAEHFIPFLND 95
Query: 120 ESPAMALG-------SVFGVVAGLLPGHQFA--SVRAAVEMALIDAVAKSVSMPLWRLFG 170
+ G L +VR + AL+DA A + +
Sbjct: 96 HIKPLLEGRDVDAFLPNARFFDKLRIDGNLLHTAVRYGLSQALLDATALASGRLKTEVVC 155
Query: 171 GVSNTITTDITIPI--VSPAEAAELASKYRKQG--------FTTLKLKVGKNLKEDIEVL 220
IP+ S + K +G ++ K+G ++ E +
Sbjct: 156 DEWQLPCVPEAIPLFGQSGDDRYIAVDKMILKGVDVLPHALINNVEEKLGFKGEKLREYV 215
Query: 221 RAIRA--------------VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVT-PVLFEQP 265
R + +H D + P E + L + P+ E P
Sbjct: 216 RWLSDRILSLRSSPRYHPTLHIDVYGTIGLIFDMDPVRCAEYIASLEKEAQGLPLYIEGP 275
Query: 266 VHRDD----WEGLGHV-SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV 320
V + L + + + GV + ADE C + D+ ++ IK +
Sbjct: 276 VDAGNKPDQIRMLTAITKELTRLGSGVKIVADEWCNTYQDIVDFTDAGSCHMVQIKTPDL 335
Query: 321 G-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLS 358
G + ++ + G+ GG ET ++ H++
Sbjct: 336 GGIHNIVDAVLYCNKHGMEAYQGGTCNETEISARTCVHVA 375
|
| >3vdg_A Probable glucarate dehydratase; enolase, magnesium binding site, lyase; 1.90A {Mycobacterium smegmatis str} PDB: 3vfc_A* Length = 445 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 5e-39
Identities = 60/363 (16%), Positives = 106/363 (29%), Gaps = 38/363 (10%)
Query: 55 PLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA-MVKASE 113
P+ I+++ G G GE Q A +
Sbjct: 37 PVAFADPPLLNTVGVHQPYALRAVIQLDTDAGLTGLGETYADTVHLERLQAAAHAIVGRS 96
Query: 114 ACE-------VLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
+ G G+ + V + E+A +D + P+
Sbjct: 97 VFSTNVIRALISDALGGDRTGDGSGLAGMITSASVVDRVFSPFEVACLDVQGQVTGRPVS 156
Query: 167 RLFGG-----------------VSNTITTDITIPIVSPAEAAELASKYRK-QGFTTLKLK 208
L GG D + P A + GF+ +KLK
Sbjct: 157 DLLGGAVRDAVPFSAYLFYKWAAHPGAEPDGWGAALDPDGIVAQARRMIDEYGFSAIKLK 216
Query: 209 VGKN-LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 267
G +E++ + A+RA PD LD N + PQ +V+V L E + E P
Sbjct: 217 GGVFAPEEEMAAVEALRAAFPDHPLRLDPNAAWTPQTSVKVAAGL-EGVL--EYLEDPT- 272
Query: 268 RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGAL 326
+G+ V+ + + +A + + D + V N V+ G+ +
Sbjct: 273 -PGLDGMAEVAA----QAPMPLATNMCVVAFDQLPAAVAKNSVQVVLSDHHYWGGLQRSR 327
Query: 327 EIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGL-GCFKFIDLDTPLLLSEDPVLDGYE 385
+ + GL L + +++ HL+A D P +
Sbjct: 328 LLAGICDTFGLGLSMHSNSHLGISLAAMVHLAAATPNLTYACDTHWPWRHEDVVAPGALN 387
Query: 386 VSG 388
Sbjct: 388 FCD 390
|
| >3no1_A Isomerase, mandelate racemase/muconate lactonizing enzyme; enolase,metal-binding,PSI-II, NYSGXRC, structural genomics; 2.16A {Marine actinobacterium} PDB: 3msy_A Length = 398 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 3e-37
Identities = 63/307 (20%), Positives = 112/307 (36%), Gaps = 36/307 (11%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA 111
E P+ PL F + + + R+ G +G ++
Sbjct: 28 ETIPMVAPLAREFRGSHYHMTHRATIVTRVHTDAGIIGEAYTG--DEHETMFDIDRIIHE 85
Query: 112 SEACEVLKESPA-------------MALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVA 158
A ++ + + + L AAV A+ DAV
Sbjct: 86 ELAPTLIGQDAMAIERLWDSGYKVTFDILRDRRLGLVAL---------AAVNTAIWDAVG 136
Query: 159 KSVSMPLWRLFGGVSNTITTDITIPIV--SPAEAAELASKYRKQGFTTLKLKVGK-NLKE 215
K++ MPLW+L+GG N + A+ Y++ G +K KVG + E
Sbjct: 137 KALKMPLWKLWGGYRNELPMIAIGGYYGEPLGSIADEMHNYQELGLAGVKFKVGGLSAAE 196
Query: 216 DIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH-RDDWEG 273
D + A R A D +DAN+GYKP AV++ ++ ++ FE+PV +D
Sbjct: 197 DAARITAAREAAGDDFIICIDANQGYKPAVAVDLSRRIADLN--IRWFEEPVEWHNDKRS 254
Query: 274 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVV 332
+ V + + V V A ++ S + +++ DV N + G L +
Sbjct: 255 MRDV----RYQGSVPVCAGQTEFSASGCRDLMETGAIDVCNFDSSWSGGPTAWLRTAAIA 310
Query: 333 RASGLNL 339
+ + +
Sbjct: 311 TSYDVQM 317
|
| >3cyj_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, isomerase, PSI-2; 2.30A {Rubrobacter xylanophilus dsm 9941} Length = 372 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 2e-36
Identities = 64/349 (18%), Positives = 119/349 (34%), Gaps = 36/349 (10%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA 111
E VP P + T + D + + G G G V V++
Sbjct: 12 EVSAYTVPTDYPESDGTLQWDSTTMILVEAH-GGGRKGLGYTYGDVSVGR------FVES 64
Query: 112 SEACEVLKESPAMALGSVFGVV--AGLLPGHQFASVRA--AVEMALIDAVAKSVSMPLWR 167
A ++ +V+ + A G A AV++AL D A+ + +PL
Sbjct: 65 KLAGVAEGSDA-LSPPAVWARMQAAIRNAGRPGVGAMAVSAVDIALWDLKARLLGLPLAD 123
Query: 168 LFGGVSNTITTDIT--IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR- 224
+ + E + G +K+KVG+ ++D E +RA R
Sbjct: 124 ALPRFHAEVPVYGSGGFTSYPLRRLQEQLGGWAAAGIPRVKMKVGREPEKDPERVRAARE 183
Query: 225 AVHPDSSFILDANEGYKPQEAVEVLEKLYE-MGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283
A+ ++DAN Y ++A+ G++ E+PV +D EGL + +
Sbjct: 184 AIGESVELMVDANGAYTRKQALYWAGAFAREAGIS--YLEEPVSSEDREGLRLLR--DRG 239
Query: 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIG 342
GV++AA E +L + + D++ + + G+ G L + + R +
Sbjct: 240 PGGVAIAAGEYEWTLPQLHDLAGC--VDILQADVTRCGGITGLLRVDGICRGHQIPFSAH 297
Query: 343 GMVETRLAMGFAGHLSAGLGCFKFI-------DLDTPLLLSEDPVLDGY 384
A + H + + ++ L G
Sbjct: 298 C------APAVSAHACCAVESLLHLEYFHDHARVERLLFDGTLDPEGGS 340
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A Length = 382 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 2e-35
Identities = 71/348 (20%), Positives = 125/348 (35%), Gaps = 38/348 (10%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA 111
E PL L P+ A IRI +G GWGE K
Sbjct: 10 ETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGIDGWGECVDWLPALHV----GFTK- 64
Query: 112 SEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171
L A + S+ + HQ A +AV MAL + AK+ + L+GG
Sbjct: 65 -RIIPFLLGKQAGSRLSLVRTIQK---WHQRA--ASAVSMALTEIAAKAADCSVCELWGG 118
Query: 172 VSNTITTDITIPI-----------VSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEV 219
IP+ + + K+GF +K+K+G + KED+
Sbjct: 119 RYRE-----EIPVYASFQSYSDSPQWISRSVSNVEAQLKKGFEQIKVKIGGTSFKEDVRH 173
Query: 220 LRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF-EQPVHRDDWEGLGHV 277
+ A++ + ILDAN+ Y A + E T + + E+P+ D + +
Sbjct: 174 INALQHTAGSSITMILDANQSYDAAAAFKWERYFSEW--TNIGWLEEPLPFDQPQDYAML 231
Query: 278 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASG 336
+ + V VA E+ + ++ D+I + V G+ + +++ R G
Sbjct: 232 ----RSRLSVPVAGGENMKGPAQYVPLLSQRCLDIIQPDVMHVNGIDEFRDCLQLARYFG 287
Query: 337 LNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGY 384
+ + L+ +A A L + + D + D + + +
Sbjct: 288 VRASAHAY-DGSLSRLYALFAQACLPPWSKMKNDHIEPIEWDVMENPF 334
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* Length = 392 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 2e-35
Identities = 61/369 (16%), Positives = 124/369 (33%), Gaps = 52/369 (14%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIE-----LSNGCVGWGEAPVLPHVTAEDQQTAM 108
R + P+ +P A ++ + + VG+G + +
Sbjct: 12 REITKPISSPIRNAYIDFTKMTTSLVAVVTDVVREGKRVVGYGFNSNGRYGQG-----GL 66
Query: 109 VKASEACEVLKESPAMALGSVFGVV----------AGLLPGHQFASVRA--AVEMALIDA 156
++ A +L+ P L + PG A ++MA+ DA
Sbjct: 67 IRERFASRILEADPKKLLNEAGDNLDPDKVWAAMMINEKPGGHGERSVAVGTIDMAVWDA 126
Query: 157 VAKSVSMPLWRLFGGVSNTITTD---------ITIPIVSPAEAAELASKYRKQGFTTLKL 207
VAK PL+RL P + Y +G+ +K+
Sbjct: 127 VAKIAGKPLFRLLAERHGVKANPRVFVYAAGGYYYPGKGLSMLRGEMRGYLDRGYNVVKM 186
Query: 208 KVGK-NLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQP 265
K+G ++ED + A+ + D+ +DAN + + + + L + +E+
Sbjct: 187 KIGGAPIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGIAYAKMLRDYP--LFWYEEV 244
Query: 266 VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVK----GNLADVINIKLAKV- 320
D+ ++ + + +A E+ S D + +++ D + A
Sbjct: 245 GDPLDYALQAALA----EFYPGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFDCALSY 300
Query: 321 GVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLG---CFKFIDLDTPLLLSE 377
G+ +EV++ G + + +++AGLG + DL P
Sbjct: 301 GLCEYQRTLEVLKTHGWSPS---RCIPHGGHQMSLNIAAGLGLGGNESYPDLFQPYGGFP 357
Query: 378 DPVL--DGY 384
D V +G+
Sbjct: 358 DGVRVENGH 366
|
| >3va8_A Probable dehydratase; enolase, magnesium binding site, lyase; 2.00A {Gibberella zeae} Length = 445 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 3e-34
Identities = 54/356 (15%), Positives = 111/356 (31%), Gaps = 39/356 (10%)
Query: 55 PLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA-MVKASE 113
P+ + I I + G GE+ Q+ A +K
Sbjct: 36 PVAFHDMPLLNSVGVHEPFALRSIIEIITEDS-YGLGESYGDSAHLDRLQKAADKIKGLS 94
Query: 114 ACE-------VLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
++ G+ ++ V + E+A +D K + +
Sbjct: 95 VYSTNVIYQRCVESLRNDTNTGGDGMGGMVVTASVADKVFSPFEVACLDLQGKLAGISVS 154
Query: 167 RLFGG-----------------VSNTITTDITIPIVSPAEAAELASKYRKQ-GFTTLKLK 208
L GG D P + P + A K + GF +KLK
Sbjct: 155 DLLGGRVRDSVQYSAYLFYKWGGHPGDEDDEYGPALDPEGVVKQAKKIIDEYGFKAIKLK 214
Query: 209 VGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 267
G +++ ++A+ P LD N + + + V ++L + E P
Sbjct: 215 GGVFPPADEVAAIKALHKAFPGVPLRLDPNAAWTVETSKWVAKELEGI---VEYLEDPA- 270
Query: 268 RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGAL 326
+ EG+ V + + +A + + + D + + + VI G+ +
Sbjct: 271 -GEIEGMAAV----AKEASMPLATNMAVVAFDHLPPSILQDAVQVILSDHHFWGGLRKSQ 325
Query: 327 EIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVL 381
+ + GL L + +++ HL++ + D P ++ V+
Sbjct: 326 TLASICATWGLRLSMHSNSHLGISLAAMTHLASATPNLDYACDTHWPWKRRDEDVV 381
|
| >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP} Length = 428 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 4e-34
Identities = 71/346 (20%), Positives = 135/346 (39%), Gaps = 38/346 (10%)
Query: 15 PQKPICQMASSPPAAAAPTSFSFKNLTQTFTVDVQRAENRPLN--VPLIAPFTIATSRLD 72
P P + ++ +N ++ + + + PL+ +P T+
Sbjct: 9 PSLPCWRCFAASGRITLSIKRFTQN-SRRHDMKITKINAIPLSYRLPEGKTVTMGVGSTI 67
Query: 73 QVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP---------- 122
+ + + IR+E S G G+GEA A T+++ + A ++
Sbjct: 68 KRDAIIIRVETSEGITGYGEAHPGRSPGA---ITSLIHNTIAPMLIGMKATDCVGAWQRV 124
Query: 123 ---AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTI--- 176
++ + A + + ++MAL D K+ +MPL+ L GG I
Sbjct: 125 HRMQLSSHGLGAGAALAI---------SGIDMALWDIRGKAANMPLYELLGGSKRRIPAY 175
Query: 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILD 235
I + AE A +Y +G+ LKL++G + DIE +R +R + + + D
Sbjct: 176 AGGIALGYQPKESLAEEAQEYIARGYKALKLRIGDAARVDIERVRHVRKVLGDEVDILTD 235
Query: 236 ANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESC 295
AN Y +A VL L E+ E+P +D+ +AK V +AA E+
Sbjct: 236 ANTAYTMADARRVLPVLAEIQ--AGWLEEPFACNDFASY---REVAKITPLVPIAAGENH 290
Query: 296 RSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLM 340
+ + +++ V L+K G+ + I + A + +
Sbjct: 291 YTRFEFGQMLDAGAVQVWQPDLSKCGGITEGIRIAAMASAYRIPIN 336
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* Length = 398 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 1e-33
Identities = 83/383 (21%), Positives = 149/383 (38%), Gaps = 36/383 (9%)
Query: 22 MASSPPAAAAPTSFSFKNLTQTFTVD-VQRAENRPLNVPLIAPFTIATSR------LDQV 74
MA S + A + + T T D ++ + +PL P + A L +V
Sbjct: 1 MALSANSDAVTYAKAANTRTAAETGDRIEWVKLSLAFLPLATPVSDAKVLTGRQKPLTEV 60
Query: 75 ENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV- 133
+ I +G G G + A K E + L + ++ +
Sbjct: 61 AIIIAEIRSRDGFEGVGFS--YSKRAGGQGIYAHAK--EIADNLLGEDPNDIDKIYTKLL 116
Query: 134 -AGLLPGHQFASVRA--AVEMALIDAVAKSVSMPLWRLFGGVSNTI---TTDITIPIVSP 187
AG G +V+A +++AL D AK +PL +L G +++ T
Sbjct: 117 WAGASVGRSGMAVQAISPIDIALWDMKAKRAGLPLAKLLGAHRDSVQCYNTSGGFLHTPL 176
Query: 188 AEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEA 245
+ + R+ G +KLKVG+ N EDI L A+R A+ + ++DAN+ + + A
Sbjct: 177 DQVLKNVVISRENGIGGIKLKVGQPNCAEDIRRLTAVREALGDEFPLMVDANQQWDRETA 236
Query: 246 VEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIV 305
+ + K+ + + E+P+ D EG + +A E S + ++++
Sbjct: 237 IRMGRKMEQFN--LIWIEEPLDAYDIEGHAQL----AAALDTPIATGEMLTSFREHEQLI 290
Query: 306 KGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCF 364
GN +D + +V G+ L+I+++ G L +E L HLSA
Sbjct: 291 LGNASDFVQPDAPRVGGISPFLKIMDLAAKHGRKLAPHFAMEVHL------HLSAAYPLE 344
Query: 365 K---FIDLDTPLLLSEDPVLDGY 384
+ PL + + DG
Sbjct: 345 PWLEHFEWLNPLFNEQLELRDGR 367
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A Length = 371 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 1e-32
Identities = 61/291 (20%), Positives = 106/291 (36%), Gaps = 27/291 (9%)
Query: 52 ENRPLNVPLIAPFTIAT-SRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVK 110
+PL T +T + E + +RIE S+G G G MV
Sbjct: 8 RTDLYRIPLPTRLTDSTHGAMMDFELITVRIEDSDGATGLGYT--YTVNHGGAAVATMVD 65
Query: 111 ASEACEVLKESP--------AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVS 162
+L +M + G S +AV++AL D
Sbjct: 66 KDLRGCLLGADAEQIEKIWQSMWWRLHYAGRGGHA-----TSAISAVDIALWDLKGIRAR 120
Query: 163 MPLWRLFGGVSNTIT--TDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEV 219
PLW+LFGG + + A+ A ++ GF +K+KVG+ +LKED++
Sbjct: 121 TPLWKLFGGYDPVVPVYAGGIDLELPVADLKTQADRFLAGGFRAIKMKVGRPDLKEDVDR 180
Query: 220 LRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 278
+ A+R + ++DAN + A+ L E+P DD G +
Sbjct: 181 VSALREHLGDSFPLMVDANMKWTVDGAIRAARALAPFD--LHWIEEPTIPDDLVGNARI- 237
Query: 279 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEI 328
+ G ++A E+ +L D V+ + ++ + G ++
Sbjct: 238 ---VRESGHTIAGGENLHTLYDFHNAVRAGSLTLPEPDVSNIGGYTTFRKV 285
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* Length = 393 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 1e-32
Identities = 71/352 (20%), Positives = 126/352 (35%), Gaps = 35/352 (9%)
Query: 52 ENRPLNVPLIAPFTIATS------RLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQ 105
+PL P + A + ++ + IE + G G G + Q
Sbjct: 19 RISSCYLPLATPISDAKVLTGRQKPMTEIAILFAEIETAGGHQGLGFS--YSKRAGGPGQ 76
Query: 106 TAMVKASEACEVLKESPAMALGSVFGVV--AGLLPGHQFASVRA--AVEMALIDAVAKSV 161
A + E L + ++ + AG G S +A A ++AL D AK
Sbjct: 77 FAHAR--EIAPALIGEDPSDIAKLWDKLCWAGASAGRSGLSTQAIGAFDVALWDLKAKRA 134
Query: 162 SMPLWRLFGGVSNTI---TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDI 217
+ L +L G +++ T + AS ++G +KLKVG+ + DI
Sbjct: 135 GLSLAKLLGSYRDSVRCYNTSGGFLHTPIDQLMVNASASIERGIGGIKLKVGQPDGALDI 194
Query: 218 EVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGH 276
+ A+R + ++DAN+ + A + V E+P+ D EG
Sbjct: 195 ARVTAVRKHLGDAVPLMVDANQQWDRPTAQRMCRIFEPFN--LVWIEEPLDAYDHEGHAA 252
Query: 277 VSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRAS 335
+ +F +A E S + +++ AD + +V G+ L+I + +
Sbjct: 253 L----ALQFDTPIATGEMLTSAAEHGDLIRHRAADYLMPDAPRVGGITPFLKIASLAEHA 308
Query: 336 GLNLMIGGMVETRLAMGFAGHLSAGLGCFK---FIDLDTPLLLSEDPVLDGY 384
GL L +E + HL+A + PL + DG
Sbjct: 309 GLMLAPHFAMELHV------HLAAAYPREPWVEHFEWLEPLFNERIEIRDGR 354
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} Length = 401 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 2e-32
Identities = 62/364 (17%), Positives = 123/364 (33%), Gaps = 50/364 (13%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA 111
+ L++P + + + +R+ + G +GWGE P +
Sbjct: 9 DLFYLSMPEVTDAADGSQDA-----LLVRVA-AGGHIGWGECEAAPLPSIAAFVCPKSHG 62
Query: 112 SEACEVLK-----ESP--------AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVA 158
C + + AL + + + +EMAL D +
Sbjct: 63 --VCRPVSDSVLGQRLDGPDDIARIAALVGYNSMDLLQA-----PHMLSGIEMALWDLLG 115
Query: 159 KSVSMPLWRLFGG-VSNTITTDIT-IPIVSPAEAAELASKYRKQGFTTLKLKVGK----N 212
+ +S P W L G S+ + + +P E E A R+ GF +K G
Sbjct: 116 RRLSAPAWALLGYSASHGKRPYASLLFGDTPQETLERARAARRDGFAAVKFGWGPIGRGT 175
Query: 213 LKEDIEVLRAIR-AVHPDSSFILDANEGYKP--QEAVEVLEKLYEMGVTPVLFEQPVHRD 269
+ D + + A R + PD ++D + + + A L L G + E+P
Sbjct: 176 VAADADQIMAAREGLGPDGDLMVDVGQIFGEDVEAAAARLPTLDAAG--VLWLEEPFDAG 233
Query: 270 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEI 328
+ A V +A E+ + + ++ I I ++ G+ A +
Sbjct: 234 ALAAHAAL---AGRGARVRIAGGEAAHNFHMAQHLMDYGRIGFIQIDCGRIGGLGPAKRV 290
Query: 329 IEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFK---FIDLDTPLL--LSEDPVL-- 381
+ +A G+ + + LA+ + AGL + + L ++ D +
Sbjct: 291 ADAAQARGI-TYVNHTFTSHLALSASLQPFAGLEADRICEYPAAPQQLALDITGDHIRPD 349
Query: 382 -DGY 384
+G
Sbjct: 350 AEGL 353
|
| >3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} Length = 372 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 1e-31
Identities = 60/296 (20%), Positives = 107/296 (36%), Gaps = 30/296 (10%)
Query: 52 ENRPLNVPLIA-PFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVK 110
E L++PL + + +T + V +I S+G G+G H+ ++ T+ +
Sbjct: 7 EPFILHLPLTSESISDSTHSITHWGVVGAKITTSDGIEGYGFTGTHAHLPSDRLITSCIS 66
Query: 111 ASEACEVLKESPA--------MALGSVFGVVAGLLPGHQFASVRA--AVEMALIDAVAKS 160
A +L E + +A V G + A AV++AL D AK
Sbjct: 67 DCYAPLLLGEDASDHSRLWTKLARYPSLQWV-----GRAGITHLALAAVDVALWDIKAKK 121
Query: 161 VSMPLWRLFGGVSNT-----ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLK 214
+PLW GG T + A A + GFT LK+KVG +
Sbjct: 122 AGVPLWHYLGGARTAGVEAYNTDIGWLSFTLEDLLAGSARAVEEDGFTRLKIKVGHDDPN 181
Query: 215 EDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEG 273
DI L A+R V +D N + ++ FE+P+ DD
Sbjct: 182 IDIARLTAVRERVDSAVRIAIDGNGKWDLPTCQRFCAAAKDLD--IYWFEEPLWYDDVTS 239
Query: 274 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEI 328
+ + +A E ++D + + + + ++ G+ +++
Sbjct: 240 HARL----ARNTSIPIALGEQLYTVDAFRSFIDAGAVAYVQPDVTRLGGITEYIQV 291
|
| >4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI, structural genomics, lyase; 1.70A {Actinobacillus succinogenes} PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 3pwi_A* 1jct_A* 3pwg_A* 1bqg_A Length = 464 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 6e-31
Identities = 52/376 (13%), Positives = 107/376 (28%), Gaps = 56/376 (14%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
P+ ++ + + ++ ++G G GE P + + A
Sbjct: 34 IPVAGHDSMLLNLSGAHSPYFTRNIVILKDNSGNTGVGEVPGGEKIRQ-----TLEDAKP 88
Query: 114 ACEVLKESP------------AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSV 161
V+ ++ G V A+E A++D + + +
Sbjct: 89 L--VIGKTLGEYKNVMNTVRQTFNDHDAGGRGLQTFDLRTTIHVVTAIEAAMLDLLGQFL 146
Query: 162 SMPLWRLFGG-------------------------------VSNTITTDITIPIVSPAEA 190
+ + L G ++P
Sbjct: 147 GVTVASLLGDGQQRDAVEMLGYLFFIGDRKKTTLAYQNQENDPCDWYRVRHEEAMTPESV 206
Query: 191 AELASK-YRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEV 248
LA Y K GF KLK G + E+ E + A+ PD+ LD N + EAV++
Sbjct: 207 VRLAEAAYEKYGFNDFKLKGGVLDGFEEAEAVTALAKRFPDARITLDPNGAWSLDEAVKI 266
Query: 249 LEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 308
++L + E P + + + G+ A + + +
Sbjct: 267 GKQLKGV---LAYAEDPCGAEQGYSGREIMAEFRRATGLPTATNMIATDWRQMGHTISLQ 323
Query: 309 LADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGL-GCFKFI 367
D+ + G++ + ++ GL +++ H++A G I
Sbjct: 324 SVDIPLADPHFWTMQGSIRVAQMCHEWGLTWGSHSNNHFDISLAMFTHVAAAAPGDITAI 383
Query: 368 DLDTPLLLSEDPVLDG 383
D +
Sbjct: 384 DTHWIWQEGNQRLTKE 399
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* Length = 389 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 7e-31
Identities = 62/297 (20%), Positives = 121/297 (40%), Gaps = 35/297 (11%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAI--RIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
+ L+ P+ + + ++ I + G G G + +
Sbjct: 9 KAHALSTPIPERMRVESGAGLKLNRQMILVEVRTDEGVTGVGSPSGPYDLAV---LKRAI 65
Query: 110 KASEACEVLKESP--------AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSV 161
+ +++ E P + G V L + + V++AL D +++
Sbjct: 66 EDVIGPQLIGEDPANINYLWHKVFHGEVSR---NLGHRSVGIAAMSGVDIALWDLKGRAM 122
Query: 162 SMPLWRLFGGVSNTITTDITIPI--------VSPAEAAELASKYRKQGFTTLKLKVGKNL 213
+ P+++L GG + + ++P +AA+ + + +QGFT KLKVG+
Sbjct: 123 NQPIYQLLGGKFH----TRGVRAYASSIYWDLTPDQAADELAGWVEQGFTAAKLKVGRAP 178
Query: 214 KEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWE 272
++D LRA+R V D ++DAN+ +A+ +L L E G FE+P+ DD E
Sbjct: 179 RKDAANLRAMRQRVGADVEILVDANQSLGRHDALAMLRILDEAG--CYWFEEPLSIDDIE 236
Query: 273 GLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEI 328
G + V +A E+ + + ++ + DV+ ++ G+ AL I
Sbjct: 237 GH---RILRAQGTPVRIATGENLYTRNAFNDYIRNDAIDVLQADASRAGGITEALAI 290
|
| >3p0w_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, protein structure initiative; HET: GKR; 1.71A {Ralstonia pickettii} PDB: 3nxl_A Length = 470 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-29
Identities = 59/384 (15%), Positives = 118/384 (30%), Gaps = 58/384 (15%)
Query: 55 PLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAP-----------VLPHVTAED 103
P+ + + + ++ + G G GE P V+P V +
Sbjct: 17 PVAGRDSMLLNLCGAHAPFFTRNLVILKDNAGRTGVGEVPGGEGIRQALERVIPLVVGQS 76
Query: 104 Q----------QTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMAL 153
+ A+ A + + + +V AVE AL
Sbjct: 77 IGRTNGVLSSIRRALAGGGNAAHQATVHQVTSASEAAVLRQPHEINLRMDNVITAVEAAL 136
Query: 154 IDAVAKSVSMPLWRLFGG-------------------------------VSNTITTDITI 182
+D + + + +P+ L G ++
Sbjct: 137 LDLLGQFLEVPVAELLGAGQQRDSAPMLAYLFYVGDRRKTDLPYLEGANGADDWLRLRHE 196
Query: 183 PIVSPAEAAELASKYRKQ-GFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGY 240
++PA A LA ++ GF KLK G E++E + AI+A P + LD N +
Sbjct: 197 AAMTPAAIARLAEAATERYGFADFKLKGGVMPGAEEMEAIAAIKARFPHARVTLDPNGAW 256
Query: 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD 300
EA+ + + + E P + V K G+ A +
Sbjct: 257 SLNEAIALCKGQGHL---VAYAEDPCGPEAGYSGREVMAEFKRATGIPTATNMIATDWRQ 313
Query: 301 VKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG 360
+ V+ + D+ + G++ + ++ GL +++ H++A
Sbjct: 314 MGHAVQLHAVDIPLADPHFWTMQGSVRVAQLCDEWGLTWGSHSNNHFDVSLAMFTHVAAA 373
Query: 361 L-GCFKFIDLDTPLLLSEDPVLDG 383
G ID +++ +
Sbjct: 374 APGNITAIDTHWIWQEAQERLTRE 397
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A Length = 388 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 5e-29
Identities = 58/316 (18%), Positives = 116/316 (36%), Gaps = 25/316 (7%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP---------AMALGSV 129
+R+ G VGWGE + A A++ A V+ + V
Sbjct: 55 VRMTTEAGTVGWGETYGIVAPGA---VAALINDLLAGFVIGRDASDPSAVYDDLYDMMRV 111
Query: 130 FGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDIT-IPIVSPA 188
G G + AA+++AL D + + L GG ++ ++ +P +
Sbjct: 112 RGY-----TGGFYVDALAALDIALWDIAGQEAGKSIRDLLGGGVDSFPAYVSGLPERTLK 166
Query: 189 EAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVE 247
ELA ++ +GF K + +R + P + D + P+ A+E
Sbjct: 167 ARGELAKYWQDRGFNAFKFATPVADDGPAAEIANLRQVLGPQAKIAADMHWNQTPERALE 226
Query: 248 VLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 307
++ ++ P E PV +D GL V V +A E R+ D++ ++
Sbjct: 227 LIAEMQPFD--PWFAEAPVWTEDIAGLEKV----SKNTDVPIAVGEEWRTHWDMRARIER 280
Query: 308 NLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI 367
++ ++ G+ + I + G++++ V + + + S+ L K
Sbjct: 281 CRIAIVQPEMGHKGITNFIRIGALAAEHGIDVIPHATVGAGIFLAASLQASSTLSMLKGH 340
Query: 368 DLDTPLLLSEDPVLDG 383
+ + +LDG
Sbjct: 341 EFQHSIFEPNRRLLDG 356
|
| >3mzn_A Glucarate dehydratase; lyase, structural genomics, protein structure initiative, PS nysgrc; 1.85A {Chromohalobacter salexigens} PDB: 3nfu_A Length = 450 | Back alignment and structure |
|---|
Score = 116 bits (291), Expect = 8e-29
Identities = 65/393 (16%), Positives = 117/393 (29%), Gaps = 57/393 (14%)
Query: 55 PLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEA 114
P+ ++ + +E +G G GE P + + K
Sbjct: 14 PVAGEDGFLLNLSGGHEPWFIRCVLVLEDESGNRGVGEIPSSEGILN-----GLEKCRSL 68
Query: 115 CEVLKESP------------AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVS 162
V +A G V A+E AL D +++
Sbjct: 69 --VEGARVNEVKQVLSRARGLLAQGGPEERGRQTFDLRVAVHVITAIESALFDLFGQALG 126
Query: 163 MPLWRLFGG--------------------------------VSNTITTDITIPIVSPAEA 190
MP+ L G + ++P
Sbjct: 127 MPVADLLGQYGRQRDEVEALGYLFLLGDPDKTDLPYPRVADPVDAWDEVRYREAMTPEAV 186
Query: 191 AELASK-YRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEV 248
A LA Y + GF KLK G +E+ + +RA+ P++ LD N +K EAV V
Sbjct: 187 ANLARAAYDRYGFKDFKLKGGVLRGEEEADCIRALHEAFPEARLALDPNGAWKLDEAVRV 246
Query: 249 LEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 308
LE + + E P ++ K + G+ A + ++ V+ N
Sbjct: 247 LEPIKHL---LSYAEDPCGQEGGFSGRETMAEFKKRTGLPTATNMIATDYKQLQYAVQLN 303
Query: 309 LADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGL-GCFKFI 367
D+ + GA+ + E+ G+ +++ H++A G I
Sbjct: 304 SVDIPLADCHFWTMQGAVAVGELCNEWGMTWGSHSNNHFDISLAMMTHVAAACPGEITAI 363
Query: 368 DLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 400
D + + +++ G G
Sbjct: 364 DTHWIWQDGQRITREPFQIRDGKLTVPKTPGLG 396
|
| >3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A* Length = 392 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 2e-28
Identities = 67/368 (18%), Positives = 116/368 (31%), Gaps = 64/368 (17%)
Query: 52 ENRPLNVPLIAPFTIATSR--LDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
E L + V I +G G+G + + AED
Sbjct: 18 EFAKLTGERARSAGANGRIGVHGKSCTVDIARITIDGQTGYGSSIHMTPEWAED------ 71
Query: 110 KASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLF 169
V+ +F L + R +E ++D + + P++ L
Sbjct: 72 -------VIGRRLL----DLFDDRGRLR-----EAYRLQLEYPVLDWLGQRQGKPVYDLV 115
Query: 170 GGVSNTITTDITIPI----------------VSPAEAAELASKYRKQGFTTLKLKVG--- 210
G + +P + A E A + +G K+KVG
Sbjct: 116 SGAHLETGASLVVPCYDTSLYFDDLHLADERAAVALMQEEAMQGYAKGQRHFKIKVGRGG 175
Query: 211 ------KNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 263
+ K DI ++R I P ++DAN Y EVL L ++ E
Sbjct: 176 RHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVN--LYWLE 233
Query: 264 QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL 323
+ H D+ + + V +A E S ++ +G DV+ + G
Sbjct: 234 EAFHEDEALYEDLKEWLGQRGQNVLIADGEGLASPHLIEWATRG-RVDVLQYDIIWPGFT 292
Query: 324 GALEIIEVVRASGLNLMI---GGMVETRLAMGFAGHLSAGLGCFKFIDLDTPL---LLSE 377
+E+ E + A GL G + HLSA + F+F++ D +
Sbjct: 293 HWMELGEKLDAHGLRSAPHCYGNAYGIYASG----HLSAAVRNFEFVEYDDITIEGMDVS 348
Query: 378 DPVL-DGY 384
+ +G
Sbjct: 349 GYRIENGE 356
|
| >2ppg_A Putative isomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.49A {Sinorhizobium meliloti} Length = 399 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 3e-26
Identities = 64/324 (19%), Positives = 122/324 (37%), Gaps = 31/324 (9%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVF 130
+RIE NG VGWGE L A ++ A + P +
Sbjct: 57 VRIETENGAVGWGETYGLVAPRA---TMEIIDDLLADFTIGRDPFDAAAIHDDLYDLMRV 113
Query: 131 GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDIT-IPIVSPA 188
G + AA+++AL D K +P+ +L GG + I I+ +P + A
Sbjct: 114 RGYTGGF----YVDALAAIDIALWDLAGKLAGLPVCKLLGGQRRDRIAAYISGLPEDTRA 169
Query: 189 EAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVE 247
+ AELA+ ++ +GF++ K + + +R + P D + + EAV
Sbjct: 170 KRAELAAAWQAKGFSSFKFASPVADDGVAKEMEILRERLGPAVRIACDMHWAHTASEAVA 229
Query: 248 VLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 307
+++ + G E PV +D +GL V ++A E R++ D+ V
Sbjct: 230 LIKAMEPHG--LWFAEAPVRTEDIDGLARV----AASVSTAIAVGEEWRTVHDMVPRVAR 283
Query: 308 NLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI 367
++ ++ G+ + I + ++ + + + + SA L
Sbjct: 284 RALAIVQPEMGHKGITQFMRIGAYAHVHHIKVIPHATIGAGIFLAASLQASAALANVDCH 343
Query: 368 -------DLDTPLLLSEDPVLDGY 384
+ + LL+ + L+G
Sbjct: 344 EFQHSIFEPNRRLLVGDMDCLNGE 367
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 Length = 382 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 5e-26
Identities = 51/299 (17%), Positives = 98/299 (32%), Gaps = 47/299 (15%)
Query: 52 ENRPLNVPLIAPFTIATSR----LDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
E R A QVE + + +G G E +
Sbjct: 7 EVRVFRTTTRRHSDSAGHAHPGPAHQVEQAMLTVRTEDGQEGHSFT------APEIVRPH 60
Query: 108 MVKASEACEVLKESPA--------MALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAK 159
+++ ++ E +A A V+ AL D +
Sbjct: 61 VIEKFVKKVLIGEDHRDRERLWQDLAHWQRGS------AAQLTDRTLAVVDCALWDLAGR 114
Query: 160 SVSMPLWRLFGGVSNTI--------TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG- 210
S+ P+++L GG + + ++ + +P + A K+G+ +KL
Sbjct: 115 SLGQPVYKLIGGYRDKVLAYGSIMCGDELEGGLATPEDYGRFAETLVKRGYKGIKLHTWM 174
Query: 211 ------KNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 263
++K D++ A+R AV PD ++DA Y +A+ + L ++G E
Sbjct: 175 PPVSWAPDVKMDLKACAAVREAVGPDIRLMIDAFHWYSRTDALALGRGLEKLG--FDWIE 232
Query: 264 QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLD-DVKKIVKGNLADVINIKLAKVG 321
+P+ + D + V ES + +K D++ + VG
Sbjct: 233 EPMDEQSLSSYKWL----SDNLDIPVVGPESAAGKHWHRAEWIKAGACDILRTGVNDVG 287
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} Length = 391 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 6e-26
Identities = 50/258 (19%), Positives = 95/258 (36%), Gaps = 31/258 (12%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-ESPA--------MALGSV 129
I+I +G GWGEA + E ++K E + ++L S
Sbjct: 39 IKITTEDGIEGWGEAFSINF--REKGIAIIIK--ELFREISNIPNLSIKSFYNKISLLSD 94
Query: 130 FGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSN----TITTDITIPIV 185
G F+S +A+E+AL D K ++PL L T +
Sbjct: 95 GH------RGLDFSSATSAIEIALWDISGKLKNLPLNSLLTKSPKPNVPIYATCWSDLKK 148
Query: 186 SPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQ 243
+ K+ + + +K+ +L I+ + +R V + +LD
Sbjct: 149 DTNDYLRQIEKFYGKKYGGIKIYPMLDSLSISIQFVEKVREIVGDELPLMLDLAVPEDLD 208
Query: 244 EAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 303
+ L+++ P E+PV ++ L + K+ F + V E L ++
Sbjct: 209 QTKSFLKEVSSFN--PYWIEEPVDGENISLLTEI----KNTFNMKVVTGEKQSGLVHFRE 262
Query: 304 IVKGNLADVINIKLAKVG 321
++ N AD+ N ++ +G
Sbjct: 263 LISRNAADIFNPDISGMG 280
|
| >3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana} Length = 374 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 1e-24
Identities = 56/288 (19%), Positives = 106/288 (36%), Gaps = 34/288 (11%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA---PVLPHVTAEDQQTAM 108
E L VP + V +++ G VG GEA P++ E QT
Sbjct: 9 EVLHLRVPAMDADCEWGEDA-----VIVKVHTDKGIVGVGEADSSPLVVQACIEAPQTNF 63
Query: 109 VKASEACEVLKESPA--------MALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKS 160
++ E+ M GS + G +A+++AL D +
Sbjct: 64 YCNGLKRLLIGENALEIERLWNKMYWGSNYMGRRGAG-----IHAISAIDIALWDIAGQF 118
Query: 161 VSMPLWRLFGG-VSNTITTDIT-IPIVSPAEAAELASKYRKQGFTTLKLKVG---KNLKE 215
+P+ L GG + I T IP P + + + QGF+++K G +
Sbjct: 119 YGVPVHTLLGGKYRDKIRCYGTFIPADKPEDNVAIVQGLKDQGFSSIKFGGGVMGDDPDT 178
Query: 216 DIEVLRAIR-AVHPDSSFILDANEG-YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEG 273
D +++A+R A P+ +D + + + ++L E E+PV D
Sbjct: 179 DYAIVKAVREAAGPEMEVQIDLASKWHTCGHSAMMAKRLEEFN--LNWIEEPVLADSLIS 236
Query: 274 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
+ + +A ES + + ++ + + AD++ + + G
Sbjct: 237 YEKL----SRQVSQKIAGGESLTTRYEFQEFITKSNADIVQPDITRCG 280
|
| >3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, TIM barrel; HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A 3t9p_A 3t8q_A Length = 388 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 2e-24
Identities = 49/268 (18%), Positives = 85/268 (31%), Gaps = 46/268 (17%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-----ESPA--------MA 125
+R+ +G GWG+ + + + +
Sbjct: 39 VRVTTQDGAQGWGQVSTYHADIT---------CTVLHRQVAPWMLGQDITDLDDLLDIVT 89
Query: 126 LGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTI---TTDITI 182
PG A V+ A+ D K P+ + GG I + +
Sbjct: 90 EREHKF------PGSYLRRAMAGVDTAIWDLRGKQQGKPVAEVLGGTPGLIRAYASSMKR 143
Query: 183 PIVSPAEAAELASKYRKQGFTTLKLKVG--------KNLKEDIEVLRAIR-AVHPDSSFI 233
I EA L QGFT K++ G + E++ +R + D +
Sbjct: 144 DITPRDEAERLKRLRDTQGFTAFKVRAGAEVGRNRDEWPGRTEEIIPTMRRELGDDVDLL 203
Query: 234 LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE 293
+DAN Y P A+EV L + G FE+P + V D + V E
Sbjct: 204 IDANSCYTPDRAIEVGHMLQDHG--FCHFEEPCPYWELAQTKQV----TDALDIDVTGGE 257
Query: 294 SCRSLDDVKKIVKGNLADVINIKLAKVG 321
L ++++ D++ + +G
Sbjct: 258 QDCDLPTWQRMIDMRAVDIVQPDILYLG 285
|
| >3pfr_A Mandelate racemase/muconate lactonizing protein; emolase superfamily fold, D-glucarate dehydratase, D-glucara isomerase; HET: GKR; 1.90A {Actinobacillus succinogenes} PDB: 3n6j_A 3n6h_A* Length = 455 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 4e-24
Identities = 55/351 (15%), Positives = 116/351 (33%), Gaps = 56/351 (15%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVF 130
+ + ++G G GEAP + A+ +A V+ + M G +
Sbjct: 42 VILTDNSGHTGVGEAPGGATIEN-----ALTEAIPH--VVGRPISILNKIVNDMHNGYLD 94
Query: 131 GVVAGLLPGHQFASVR----AAVEMALIDAVAKSVSMPLWRLFGG--------------- 171
G +R AA+E AL+D + + + +P+ L G
Sbjct: 95 ADYDTFGKGAWTFELRVNAVAALEAALLDLMGQFLGVPVAELLGPGKQRDEVTVLGYLFY 154
Query: 172 VSNTITTDITIP-----------------IVSPAEAAELASKYRKQGFTTLKLKVG-KNL 213
V + TD+ + + A A+ + GF KLK G
Sbjct: 155 VGDDKITDLPYQQPVTGKHEWYDIRRKKAMDTQAVIELAAASKDRYGFKDFKLKGGVFEG 214
Query: 214 KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEG 273
++I+ + ++ PD+ LD N + EA+++ + L ++ E P ++
Sbjct: 215 SKEIDTVIELKKHFPDARITLDPNGCWSLDEAIQLCKGLNDV---LTYAEDPCIGENGYS 271
Query: 274 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVR 333
+ + + G+ A + + ++ + D+ + GA + ++
Sbjct: 272 GREIMAEFRRRTGIPTATNMIATNWREMCHAIMLQSVDIPLADPHFWTLTGASRVAQLCN 331
Query: 334 ASGLNLMIGGMVETRLAMGFAGHLSAGL-GCFKFIDLDTPLLLSEDPVLDG 383
GL +++ H+ A G +D + +
Sbjct: 332 EWGLTWGCHSNNHFDISLAMFSHVGAAAPGNPTALDTHWIWQEGDFYLTKN 382
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A Length = 412 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 4e-24
Identities = 57/312 (18%), Positives = 109/312 (34%), Gaps = 58/312 (18%)
Query: 43 TFTVDVQRAENRPLNVPLIAPFTIATSRLDQVEN------VAIRIELSNGCVGWGEAPVL 96
T + P + D + + + +E +G +G G A +
Sbjct: 30 TRVWTWKGPTVPPQGNFCTNASDALWMKGDAMSSFRFHQWLTCEVETEDGTIGIGNAALA 89
Query: 97 PHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVF----GVVAGLLPGHQFAS 144
P V ++ A V+ E P M S G+ +
Sbjct: 90 PSVVK-----KVIDDWYAPLVIGEDPFDYAYIWEKMYRRSHAWGRKGIGMTAI------- 137
Query: 145 VRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI-------VSPAEAAELASKY 197
+A+++A+ D + K V P+++L GG + IP+ S + A +
Sbjct: 138 --SAIDIAIWDLMGKLVGKPVFKLLGGRTKD-----RIPVYYSKLYAGSIEAMQKEAEEA 190
Query: 198 RKQGFTTLKLKVG-------KNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVL 249
K G+ K + G ++E+++ + A+R + D+ +L+ G+ A +L
Sbjct: 191 MKGGYKAFKSRFGYGPKDGMPGMRENLKRVEAVREVIGYDNDLMLECYMGWNLDYAKRML 250
Query: 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 309
KL P E+PV DD G + V ++ E S+ +++
Sbjct: 251 PKLAPYE--PRWLEEPVIADDVAGYAEL----NAMNIVPISGGEHEFSVIGCAELINRKA 304
Query: 310 ADVINIKLAKVG 321
V+ +VG
Sbjct: 305 VSVLQYDTNRVG 316
|
| >3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A Length = 433 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 1e-23
Identities = 50/277 (18%), Positives = 96/277 (34%), Gaps = 48/277 (17%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP---------AMALGSV 129
+++ +G GWGE + A+++ A + E+P + G
Sbjct: 27 VKLTTDDGITGWGECYAASV--GPEAMRAVIEDVFARHMEGENPENIELMFRRVYSSGFT 84
Query: 130 FGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-----------ITT 178
P + +E+A D + K+ P+W L GG N
Sbjct: 85 QR------PDLTAIGAFSGLEIACWDILGKARGRPVWALLGGKMNPRIRAYTYLYPLPHH 138
Query: 179 DITIPIVSPAEAAELASKYRKQGFTTLKLKVG-------------KNLKEDIEVLRAIR- 224
IT S AAE A+ +G+T +K ++ +E R IR
Sbjct: 139 PITPFWTSADMAAESAADCVARGYTAVKFDPAGPYTLRGGHMPAMTDISLSVEFCRKIRA 198
Query: 225 AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDK 284
AV + + + + A+ + + + P+ +E+PV D+ + V
Sbjct: 199 AVGDKADLLFGTHGQFTTAGAIRLGQAIEPYS--PLWYEEPVPPDNVGAMAQV----ARA 252
Query: 285 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
+ VA E + + +++ A ++ L + G
Sbjct: 253 VRIPVATGERLTTKAEFAPVLREGAAAILQPALGRAG 289
|
| >3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A Length = 405 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 2e-23
Identities = 51/263 (19%), Positives = 92/263 (34%), Gaps = 37/263 (14%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-ESPA--------MALGSV 129
+++E G GWGE + A V E + L + P+ M
Sbjct: 19 LKVETDEGVTGWGEPVIEGRART---VEAAVH--ELSDYLIGQDPSRINDLWQTMYRAGF 73
Query: 130 FGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-ITTDITIPIVSPA 188
+ G S A ++ AL D K + +P++ L GG+ + T + PA
Sbjct: 74 YR------GGPILMSAIAGIDQALWDIKGKVLGVPVYELLGGLVRDKMRTYSWVGGDRPA 127
Query: 189 EAAELASKYRKQGFTTLKLKVG---------KNLKEDIEVLRAIR-AVHPDSSFILDANE 238
+ + GF KL + + + + IR A F LD +
Sbjct: 128 DVIAGMKALQAGGFDHFKLNGCEEMGIIDTSRAVDAAVARVAEIRSAFGNTVEFGLDFHG 187
Query: 239 GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSL 298
A ++++L P+ E+PV + E + + +AA E S
Sbjct: 188 RVSAPMAKVLIKELEPYR--PLFIEEPVLAEQAETYARL----AAHTHLPIAAGERMFSR 241
Query: 299 DDVKKIVKGNLADVINIKLAKVG 321
D K++++ ++ L+ G
Sbjct: 242 FDFKRVLEAGGVSILQPDLSHAG 264
|
| >4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified} Length = 412 | Back alignment and structure |
|---|
Score = 97.3 bits (243), Expect = 2e-22
Identities = 48/275 (17%), Positives = 93/275 (33%), Gaps = 45/275 (16%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVF 130
++++ +G G GE ++ +L P
Sbjct: 26 VKLKTDDGIEGVGEIYSATF--GPKAMAPIIDDVFERHLLNRDPHHVERLFRQAYSSGFT 83
Query: 131 GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT----------ITTDI 180
+ V + +EMA D + K+ + P++ L GG +
Sbjct: 84 QRPDLTM-----MGVVSGLEMACWDIIGKAAAKPVYELLGGRIHERLRSYTYLYPKNAKG 138
Query: 181 TIPIVSPAEAAELASKYRKQGFTTLKLKVG-------------KNLKEDIEVLRAIR-AV 226
P AAE A++ K GFT +K + L R +R AV
Sbjct: 139 EYDYDDPDLAAECAAENVKLGFTAVKFDPAGPYTAYSGHQLSLEVLDRCELFCRRVREAV 198
Query: 227 HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG 286
+ + + P A+ + ++L + P+ FE+PV E + V
Sbjct: 199 GSKADLLFGTHGQMVPSSAIRLAKRLEKYD--PLWFEEPVPPGQEEAIAQV----AKHTS 252
Query: 287 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
+ +A E + + K+++ A ++ + +A+VG
Sbjct: 253 IPIATGERLTTKYEFHKLLQAGGASILQLNVARVG 287
|
| >2p3z_A L-rhamnonate dehydratase; enolase, structural genomics, PSI, protein structure initiat YORK structural genomics research consortium; 1.80A {Salmonella typhimurium LT2} PDB: 3box_A 3cxo_A* 2gsh_A 3d47_A 3d46_A 2i5q_A Length = 415 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 4e-22
Identities = 42/284 (14%), Positives = 98/284 (34%), Gaps = 39/284 (13%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
P++ + + ++ + + + +E N G+ + TA + +V+
Sbjct: 49 TPMSKYRDYEQSRQSFGINVLGTLIVEVEAENRQTGFAVS------TAGEMGCFIVEKHL 102
Query: 114 ACEVLKESP--------AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPL 165
+ + M +++ +G L + + V++AL D K V +P+
Sbjct: 103 NRFIEGKCVSDIKLIHDQMLGATMYYSGSGGL----VMNTISCVDLALWDLFGKVVGLPV 158
Query: 166 WRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-------KNLKEDIE 218
++L GG I + +LA ++ GF K+ +++D
Sbjct: 159 YKLLGGAVRD-----EIQFYATGARPDLA---KEMGFIGGKMPTHWGPHDGDAGIRKDAA 210
Query: 219 VLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 277
++ +R PD +LD A ++ E+ + +EG +
Sbjct: 211 MVADMREKCGPDFWLMLDCWMSQDVNYATKLAHACAPFN--LKWIEECLPPQQYEGYREL 268
Query: 278 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
G+ V + E +L + + + D++ + G
Sbjct: 269 K--RNAPAGMMVTSGEHHGTLQSFRTLAETG-IDIMQPDVGWCG 309
|
| >2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti} Length = 392 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 5e-22
Identities = 49/274 (17%), Positives = 93/274 (33%), Gaps = 42/274 (15%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVF 130
+ I G G GEA + M+K ++ + P+ M S +
Sbjct: 23 VEISTDEGITGAGEAGIAYG-VGGTAAAGMIKDLSERFLIGKDPSRIEELWSTMYDHSFW 81
Query: 131 GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSN----TITTDITIPIVS 186
G + + +A+E AL D K + +P++ LFGG +
Sbjct: 82 AKNGGAI----IFAGISAIEQALWDIKGKCLGVPVYELFGGKIRDRVRAYANGWYGAADT 137
Query: 187 PAEAAELASKYRKQGFTTLKLKVG------------------KNLKEDIEVLRAIR-AVH 227
P E A + K+G+ LK + ++ ++A+R A
Sbjct: 138 PDEFARAVERPLKEGYGALKFYPLAQRVGSALQHVTRRSMSAEAIELAYRRVKAVRDAAG 197
Query: 228 PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGV 287
P+ ++D + G E + K+ E+ E+P D L + ++ +
Sbjct: 198 PEIELMVDLSGGLTTDETIRFCRKIGELD--ICFVEEPCDPFDNGALKVI----SEQIPL 251
Query: 288 SVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
+A E + +KI + +I + G
Sbjct: 252 PIAVGERVYTRFGFRKIFELQACGIIQPDIGTAG 285
|
| >4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo sapiens} Length = 441 | Back alignment and structure |
|---|
Score = 96.4 bits (240), Expect = 5e-22
Identities = 63/324 (19%), Positives = 107/324 (33%), Gaps = 64/324 (19%)
Query: 55 PLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEA 114
P ++ + T V I + +G G G L T + V A
Sbjct: 18 PTSLGGHGADAMHTDPDYSAAYVVIETDAEDGIKGCGITFTLGKGT--EVVVCAVNALA- 74
Query: 115 CEVLKESPAMALGSVFGVVAGLLPGHQFASVR-----------AAVEMALIDAVAKSVSM 163
+ + F L AAV A+ D AK
Sbjct: 75 -HHVLNKDLKDIVGDFRGFYRQLTSDGQLRWIGPEKGVVHLATAAVLNAVWDLWAKQEGK 133
Query: 164 PLWRLFGGVSN---------------------------------------------TITT 178
P+W+L + TT
Sbjct: 134 PVWKLLVDMDPRMLVSCIDFRYITDVLTEEDALEILQKGQIGKKEREKQMLAQGYPAYTT 193
Query: 179 DITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-PDSSFILDAN 237
S +L ++ K G+T K+KVG +L++D+ + IR + P+ + ++DAN
Sbjct: 194 SCAWLGYSDDTLKQLCAQALKDGWTRFKVKVGADLQDDMRRCQIIRDMIGPEKTLMMDAN 253
Query: 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRS 297
+ + EAVE + KL + P+ E+P DD G +S A G+ +A E C +
Sbjct: 254 QRWDVPEAVEWMSKLAKFK--PLWIEEPTSPDDILGHATISK-ALVPLGIGIATGEQCHN 310
Query: 298 LDDVKKIVKGNLADVINIKLAKVG 321
K++++ + I ++G
Sbjct: 311 RVIFKQLLQAKALQFLQIDSCRLG 334
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* Length = 393 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 6e-22
Identities = 58/264 (21%), Positives = 101/264 (38%), Gaps = 36/264 (13%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP--------AMALGSVF 130
+RI +G VGWGEA + A +V A + + M V
Sbjct: 28 VRITAEDGTVGWGEASPMLGGIA---SLGVVARDIAPFLEGQEVLDHAVLLDRMMHRLVK 84
Query: 131 GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-----ITTDITIPIV 185
G+ + AA ++AL D K + P+++L GG T +
Sbjct: 85 LGPEGIA-----TAALAACDIALWDLKGKLLGQPIYKLLGGAWRTRLPCYSSIGGNAARS 139
Query: 186 SPAEAAELASKYRKQGFTTLKLKVG-------KNLKEDIEVLRAIR-AVHPDSSFILDAN 237
E+A + + +K++ ++ DI RA+R + PD+ DAN
Sbjct: 140 VDEVVREVARRVEAEQPAAVKIRWDGDRTRCDVDIPGDIAKARAVRELLGPDAVIGFDAN 199
Query: 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRS 297
GY A+ V L ++G FE+PV +G V + ++V+A E +
Sbjct: 200 NGYSVGGAIRVGRALEDLG--YSWFEEPVQHYHVGAMGEV----AQRLDITVSAGEQTYT 253
Query: 298 LDDVKKIVKGNLADVINIKLAKVG 321
L +K ++ ++ + K+G
Sbjct: 254 LQALKDLILSG-VRMVQPDIVKMG 276
|
| >2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium} Length = 407 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 7e-22
Identities = 52/289 (17%), Positives = 97/289 (33%), Gaps = 63/289 (21%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-----ESPA--------MA 125
++I G G+GE + V A + L P M
Sbjct: 30 VKINTDEGISGFGEVGLAYGVGA-------SAGIGMAKDLSAIIIGMDPMNNEAIWEKML 82
Query: 126 LGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT---------- 175
+ +G G + F++ + +++AL D K+ +PL+++ GG S
Sbjct: 83 KKTFWGQGGGGI----FSAAMSGIDIALWDIKGKAWGVPLYKMLGGKSREKIRTYASQLQ 138
Query: 176 ---ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-------------------KNL 213
+ P + A+ A +G+ +K+ K L
Sbjct: 139 FGWGDGSDKDMLTEPEQYAQAALTAVSEGYDAIKVDTVAMDRHGNWNQQNLNGPLTDKIL 198
Query: 214 KEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWE 272
+ + + AIR AV PD I + + A++ + E+G +E+PV +
Sbjct: 199 RLGYDRMAAIRDAVGPDVDIIAEMHAFTDTTSAIQFGRMIEELG--IFYYEEPVMPLNPA 256
Query: 273 GLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
+ V DK + +AA E + ++ VI + G
Sbjct: 257 QMKQV----ADKVNIPLAAGERIYWRWGYRPFLENGSLSVIQPDICTCG 301
|
| >3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana} Length = 394 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 8e-22
Identities = 42/272 (15%), Positives = 88/272 (32%), Gaps = 42/272 (15%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-----ESPA--------MA 125
+++ NG G GEA P + + + +K P M
Sbjct: 29 VKVTDENGVYGLGEADGPPECMK--AFSEIENEHKWLNNIKEAVIGRDPLEFRANYNRMY 86
Query: 126 LGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT---------- 175
+ + + GL + ++MAL D K + +P ++L GG
Sbjct: 87 DTTKWIGMRGL-----GLFAISGIDMALYDLAGKQLGVPAYKLMGGAQKAQLTPYFTLYP 141
Query: 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG----KNLKEDIEVLRAIR-AVHPDS 230
L +K +++G +K+ + + KE + LR +R + D
Sbjct: 142 SVAADATLSEIVEAYKPLIAKAKERGAKAVKVCIIPNDKVSDKEIVAYLRELREVIGWDM 201
Query: 231 SFILDANEGYKP-QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSV 289
++D + Q+A +L ++ E + DD G + +
Sbjct: 202 DMMVDCLYRWTDWQKARWTFRQLEDID--LYFIEACLQHDDLIGHQKL----AAAINTRL 255
Query: 290 AADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
E + + ++ ++ V+ + G
Sbjct: 256 CGAEMSTTRFEAQEWLEKTGISVVQSDYNRCG 287
|
| >3ekg_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, nysgrc, L-rhamnonate dehydratase,target PSI-2; HET: TLA; 1.60A {Azotobacter vinelandii avop} PDB: 2oz3_A* Length = 404 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 1e-21
Identities = 51/289 (17%), Positives = 101/289 (34%), Gaps = 43/289 (14%)
Query: 53 NRPLNVPLIAPFTIATSR----LDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAM 108
+ ++ P+ SR ++ + + + IE S+G VG+ +
Sbjct: 33 DDHISTPMGKYPEYRQSRRSFGINVLGTLVVEIEASDGNVGFAVTTGGEPAAY------I 86
Query: 109 VKASEACEVLKESP--------AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKS 160
V+ A + M +++ GL+ + + V++AL D + K
Sbjct: 87 VEKHLARFLEGARVTDIERIWDQMYNSTLYYGRKGLV-----INTISGVDLALWDLLGKV 141
Query: 161 VSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-------KNL 213
P+ +L GG + + +LA +K GF K+ + + L
Sbjct: 142 RREPVHQLLGGAVRD-----ELQFYATGARPDLA---QKMGFIGGKMPLHHGPSEGEEGL 193
Query: 214 KEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWE 272
K+++E L +R V PD + D A + E G E+ + DD+
Sbjct: 194 KKNLEELATMRERVGPDFWLMFDCWMSLDLNYATRLARGAREYG--LKWIEEALPPDDYW 251
Query: 273 GLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
G + G+ V E + + +++ D+I + G
Sbjct: 252 GYAELRR--NAPTGMMVTTGEHEATRWGFRMLLEMGCCDIIQPDVGWCG 298
|
| >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} Length = 403 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 5e-21
Identities = 53/283 (18%), Positives = 99/283 (34%), Gaps = 53/283 (18%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-ESPA--------MALGSV 129
+++ G G GEA + V ++K + +L E P + +
Sbjct: 26 VKVSTDEGIYGLGEAGIAYGV-GGSAAAGILK--DYAALLIGEDPFNTEAIWEKLFKKTF 82
Query: 130 FGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-----------ITT 178
+G G + S +A ++A D K++++P+++L GG +
Sbjct: 83 WGQGGGTV----IFSGISAFDIAFWDIKGKALNLPVYKLLGGKNREDLRVYASQLQFGWG 138
Query: 179 DITIPIVSPAEAAELASKYRKQGFTTLKLKVG-------------------KNLKEDIEV 219
E AE A K +G+ +K+ V + +K +E
Sbjct: 139 KERKSKGRKEEYAEEALKAVAEGYDAVKVDVLAHDRNGSREGVFLEGPLPSETIKIGVER 198
Query: 220 LRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 278
+ AIR AV PD I++ + A++ + + E +E+ + L
Sbjct: 199 VEAIRNAVGPDVDIIVENHGHTDLVSAIQFAKAIEEFN--IFFYEEINTPLNPRLLKEA- 255
Query: 279 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
K K + +A+ E S ++ DVI L G
Sbjct: 256 ---KKKIDIPLASGERIYSRWGFLPFLEDRSIDVIQPDLGTCG 295
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* Length = 410 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 9e-21
Identities = 48/288 (16%), Positives = 103/288 (35%), Gaps = 58/288 (20%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-ESPA--------MALGSV 129
IR+ +G G GE + +++ + ++ E P +
Sbjct: 30 IRVNTDSGLSGIGEVGLAYGA-GAKAGVGIIR--DLAPLIVGEDPLNIEKIWEFFFRKTF 86
Query: 130 FGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-----------ITT 178
+G+ G + F + +A+++AL D K + +P+++L GG +N
Sbjct: 87 WGMGGGNV----FYAGMSAIDIALWDIKGKYLGVPVYQLLGGKTNEKLRTYASQLQFGWG 142
Query: 179 DITIPIVSPAEAAELASKYRKQGFTTLKLKVG------------------------KNLK 214
D +V+P E AE A G+ +K+ LK
Sbjct: 143 DKNHILVTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLK 202
Query: 215 EDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEG 273
+ A+R A+ D+ I++ + A++ + + + L+E+P+H + +
Sbjct: 203 MGEARIAAMREAMGDDADIIVEIHSLLGTNSAIQFAKAIEKYR--IFLYEEPIHPLNSDN 260
Query: 274 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
+ V + +A E + +++++ V L G
Sbjct: 261 MQKV----SRSTTIPIATGERSYTRWGYRELLEKQSIAVAQPDLCLCG 304
|
| >4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii} Length = 404 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 1e-20
Identities = 51/285 (17%), Positives = 96/285 (33%), Gaps = 59/285 (20%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-----ESPA-------MAL 126
+++ + G G+GE + K +E +V E P
Sbjct: 27 VKLVTACGITGYGEIYNATFGP-----DLVAKMAE--DVFARQFAGEDPHHIEKLWHKTY 79
Query: 127 GSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT----------- 175
G+ + + V + +EMA D + K+ P + L GG +
Sbjct: 80 GAGYTQRPDVT----VMGVLSGLEMACWDIIGKAAGKPAYELLGGKVHERLRSYTYLYPT 135
Query: 176 -----ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-------------KNLKEDI 217
D AAE A+K QGFT +K ++L+
Sbjct: 136 DGDVYPDPDKPNVYNDADMAAEAAAKAVDQGFTAVKFDPAGAYTIYDGHQPSLEDLERSE 195
Query: 218 EVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGH 276
+ IR AV + + + + A + +L P+ FE+P+ + E +
Sbjct: 196 AFCKQIRAAVGTKADLLFGTHGQFTVSGAKRLARRLEAYD--PLWFEEPIPPEKPEDMAE 253
Query: 277 VSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
V + VA E + + ++++ A ++ + L +VG
Sbjct: 254 V----ARYTSIPVATGERLCTKYEFSRVLETGAASILQMNLGRVG 294
|
| >3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP} Length = 422 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 2e-20
Identities = 46/277 (16%), Positives = 90/277 (32%), Gaps = 49/277 (17%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVF 130
+R+ G G G A A +V ++ M + + +
Sbjct: 47 VRVTTEQGITGHGCATFQQRPLA---VKTLVDEYLQPLMIGRDANNIEDLWQMMNVNAYW 103
Query: 131 GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-ITTDITIPIVSPAE 189
G + + V+MAL D + MPL++LFGG S I +
Sbjct: 104 R------NGPLMNNAISGVDMALWDIKGQLAGMPLYQLFGGKSRDAIPAYSHASGETLEA 157
Query: 190 AAELASKYRKQGFTTLKLKVG------------------------KNLKEDIEVLRAIR- 224
QG+ ++ ++G + + +E+ A+R
Sbjct: 158 LFASVDALIAQGYRHIRCQLGFYGGTPSALHAPDNPTPGAWFDQQEYMSNTVEMFHALRE 217
Query: 225 AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDK 284
+ D +E PQ+AV++ ++L P E + L V + +
Sbjct: 218 KYGWKLHILHDVHERLFPQQAVQLAKQLEPFQ--PYFIEDILPPQQSAWLEQV----RQQ 271
Query: 285 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
V +A E + + ++ D I ++++G
Sbjct: 272 SCVPLALGELFNNPAEWHDLIVNRRIDFIRCHVSQIG 308
|
| >3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 3s47_A 3gy1_A Length = 401 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 2e-20
Identities = 45/277 (16%), Positives = 102/277 (36%), Gaps = 49/277 (17%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVF 130
+ +E + G G+G A A MV ++ ++ M + + +
Sbjct: 26 VVVETNEGVTGFGCATFQQRPLA---VKTMVDEYLKPILIGKNANNIEDLWQMMMVNAYW 82
Query: 131 GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-ITTDITIPIVSPAE 189
G + + V+MAL D AK MPL +LFGG S I +
Sbjct: 83 R------NGPVINNAISGVDMALWDIKAKLAGMPLHQLFGGKSRDAIPVYTHATSDTMEG 136
Query: 190 AAELASKYRKQGFTTLKLKVG------------------------KNLKEDIEVLRAIR- 224
+L + ++G+ ++ ++G + + + + +++R
Sbjct: 137 IYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLRE 196
Query: 225 AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDK 284
+ D +E P +A++ +++ + P E + + E L ++ + +
Sbjct: 197 KYGNQFHILHDVHERLFPNQAIQFAKEVEQYK--PYFIEDILPPNQTEWLDNI----RSQ 250
Query: 285 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
VS+ E + ++ K ++ D I ++++G
Sbjct: 251 SSVSLGLGELFNNPEEWKSLIANRRIDFIRCHVSQIG 287
|
| >2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A Length = 441 | Back alignment and structure |
|---|
Score = 90.0 bits (223), Expect = 7e-20
Identities = 71/332 (21%), Positives = 113/332 (34%), Gaps = 67/332 (20%)
Query: 55 PLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEA 114
P + L + V +R + + G+G + D QTA V A
Sbjct: 15 PTSRELDGSDAMNPDPDYSAAYVVLRTDGAEDLAGYGLVFTIGR--GNDVQTAAVAA--L 70
Query: 115 CEVLKESPAMALGSVFGVVAGLLPGHQFASVR-----------AAVEMALIDAVAKSVSM 163
E + + + G A L AV A D A++ +
Sbjct: 71 AEHVVGLSVDKVIADLGAFARRLTNDSQLRWLGPEKGVMHMAIGAVINAAWDLAARAANK 130
Query: 164 PLWRLFGGVSN---------------------------------------------TITT 178
PLWR ++ TT
Sbjct: 131 PLWRFIAELTPEQLVDTIDFRYLSDALTRDEALAILRDAQPQRAARTATLIEQGYPAYTT 190
Query: 179 DITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDAN 237
S + LA + GF T+KLKVG N+++DI R R A+ PD + +DAN
Sbjct: 191 SPGWLGYSDEKLVRLAKEAVADGFRTIKLKVGANVQDDIRRCRLARAAIGPDIAMAVDAN 250
Query: 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRS 297
+ + A++ + +L E E+P DD G + I + V V+ E ++
Sbjct: 251 QRWDVGPAIDWMRQLAEFD--IAWIEEPTSPDDVLGH---AAIRQGITPVPVSTGEHTQN 305
Query: 298 LDDVKKIVKGNLADVINIKLAKV-GVLGALEI 328
K++++ D+I I A+V GV L I
Sbjct: 306 RVVFKQLLQAGAVDLIQIDAARVGGVNENLAI 337
|
| >3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A Length = 394 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 1e-19
Identities = 41/272 (15%), Positives = 85/272 (31%), Gaps = 42/272 (15%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-----ESPA--------MA 125
+++ NG G GEA P + + + P M
Sbjct: 34 VKVTDENGVYGLGEADGSPDAIL--AYANIETEHKWLTNITEKAIGRLPIEINAIWDAMY 91
Query: 126 LGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT---------- 175
+ + + GL + ++MAL D K + +P ++L GG +
Sbjct: 92 DATQWQGMRGL-----GMFALSGIDMALYDLAGKQLGVPAYQLLGGTNKDKVHPYLTLYP 146
Query: 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----NLKEDIEVLRAIR-AVHPDS 230
V+ A L K + +K+ V + KE LR +R + D+
Sbjct: 147 AIPVDASLDVAIKGYAPLLEKAKAHNIRAVKVCVPIKADWSTKEVAYYLRELRGILGHDT 206
Query: 231 SFILDANEGY-KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSV 289
++D + E +L + ++ E + DD G + + +
Sbjct: 207 DMMVDYLYRFTDWYEVARLLNSIEDLE--LYFAEATLQHDDLSGHAKL----VENTRSRI 260
Query: 290 AADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
E + + ++ + ++ + G
Sbjct: 261 CGAEMSTTRFEAEEWITKGKVHLLQSDYNRCG 292
|
| >3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily, NYSGXRC, target 9265J, lyase, structural genomics, PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A Length = 455 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 2e-19
Identities = 54/293 (18%), Positives = 107/293 (36%), Gaps = 56/293 (19%)
Query: 55 PLNVPLIAPFTIATSR----LDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVK 110
++ P SR ++ + + + IE ++G VG+ P
Sbjct: 41 DISTPASKWEQYKKSRTSWGINVLGSFLVEIEATDGTVGFATGFGGPPA----------- 89
Query: 111 ASEACEVLK-----ESP--------AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAV 157
+ + P M S+F GL +V + +++AL D +
Sbjct: 90 CWLVHQHFERFLIGADPRNTNLLFEQMYRASMFYGRKGLP-----IAVISVIDLALWDLL 144
Query: 158 AKSVSMPLWRLFGGVSNTITTDITIPI-VSPAEAAELASKYRKQGFTTLKLKVG------ 210
K + P++RL GG + + + E + GF K+ +
Sbjct: 145 GKVRNEPVYRLIGGATKE-----RLDFYCTGPEPTA----AKAMGFWGGKVPLPFCPDDG 195
Query: 211 -KNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR 268
+ L++++E LR R AV PD ++D +E+++ ++ +E+ +
Sbjct: 196 HEGLRKNVEFLRKHREAVGPDFPIMVDCYMSLNVSYTIELVKACLDLN--INWWEECLSP 253
Query: 269 DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
DD +G + I + V E S +K+V+G D+I + +G
Sbjct: 254 DDTDGF---ALIKRAHPTVKFTTGEHEYSRYGFRKLVEGRNLDIIQPDVMWLG 303
|
| >2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} Length = 410 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 2e-18
Identities = 45/294 (15%), Positives = 92/294 (31%), Gaps = 73/294 (24%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-----ESPA--------MA 125
+R+ + G GE A + ++ E P M
Sbjct: 25 VRVWAGDE-HGLGECYPSAP-------AAGIHH--IVMNMEEQLLGEDPRDVERLYEKMR 74
Query: 126 LGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG-------------- 171
++F G + + +E AL D K +P++RL GG
Sbjct: 75 RWNIFTG--G--QAGAVITALSGIETALWDLAGKLQGVPVYRLLGGAFRRRVRLYADCNA 130
Query: 172 ----VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG----------------- 210
+ S E +A + ++GF +KL V
Sbjct: 131 GTVDAAAHHIEGGLFEEGSNEEYIAVAREAVERGFDAIKLDVDDITGPLHRDFWNGAISP 190
Query: 211 KNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKL--YEMGVTPVLFEQPVH 267
+ + + + A+R AV P+ +D + + ++ + + + E+P
Sbjct: 191 REHEAMVARVAAVREAVGPEVEVAIDMHGRFDIPSSIRFARAMEPFG----LLWLEEPTP 246
Query: 268 RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
++ + L V + + A E+ + D +++ D + +AK G
Sbjct: 247 PENLDALAEV----RRSTSTPICAGENVYTRFDFRELFAKRAVDYVMPDVAKCG 296
|
| >3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A* Length = 440 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 1e-17
Identities = 44/288 (15%), Positives = 91/288 (31%), Gaps = 66/288 (22%)
Query: 85 NGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVFGVVAGL 136
G G G A + A + + A ++ + PA A+ +
Sbjct: 54 PGLYGLGCATFTQRIYA---VQSAIDEYLAPFLIGKDPARIEDIWQSAAVSGYWR----- 105
Query: 137 LPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-ITTDITIPIVSPAEAAELAS 195
G + + ++MAL D K +P++ L GG I + E + A
Sbjct: 106 -NGPVMNNALSGIDMALWDIKGKQAGLPVYELLGGKCRDGIALYVHTDGADEVEVEDSAR 164
Query: 196 KYRKQGFTTLKLKVG-----------------------------------------KNLK 214
++G+ ++ ++G K
Sbjct: 165 AKMEEGYQYIRCQMGMYGGAGTDDLRLIANRMVKAKNIQPKRSPRTKAPGIYFDPEAYAK 224
Query: 215 EDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEG 273
+ +R + + DA+E P A+ + + L E PV ++ E
Sbjct: 225 SIPRLFDHLRNKLGFSVELLHDAHERITPINAIHMAKALEPYQ--LFFLEDPVAPENTEW 282
Query: 274 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
L + + + +A E ++++ K ++ L D I ++ +G
Sbjct: 283 LKML----RQQSSTPIAMGELFVNVNEWKPLIDNKLIDYIRCHISSIG 326
|
| >3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A* Length = 409 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 1e-17
Identities = 50/286 (17%), Positives = 92/286 (32%), Gaps = 70/286 (24%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-ESPA--------MALGSV 129
+++ G VGW E TA+++ + + L S +
Sbjct: 23 VKLTTDEGIVGWSEFDEGFGSPG---VTAVIE--QLGKRLVGASVMEHERFFAEAYCLTR 77
Query: 130 FGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG---------------VSN 174
G + A+E AL+DA AK++++P + L GG
Sbjct: 78 PA------TGGVVSEGIGAIENALLDAKAKTLNVPCYELLGGKLRDRVPVYWSHCPTWRI 131
Query: 175 TITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG------------------------ 210
P+ A + R++ F +K +
Sbjct: 132 NHPKFFGPPVTDLDGVKRTAEEARERQFRAIKTNIFIHDDGPLHAWRPGFAVPFQPALNV 191
Query: 211 --KNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 267
K L+ L A+R PD +LD N KP+ +++L +L + E
Sbjct: 192 DRKVLRNLRAHLEALRDGAGPDVEILLDLNFNAKPEGYLKILRELADFD--LFWVEIDS- 248
Query: 268 RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 313
+GL +V ++ +++ E+ + + K N DV
Sbjct: 249 -YSPQGLAYV----RNHSPHPISSCETLFGIREFKPFFDANAVDVA 289
|
| >3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A Length = 424 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 9e-17
Identities = 49/291 (16%), Positives = 93/291 (31%), Gaps = 68/291 (23%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVF 130
++I G G G+A + + + ++ ++ P G+ +
Sbjct: 42 LKIVTDQGIYGIGDATLNGREKS---VVSYLEDYLIPVLIGRDPQQIEDIWQFFYRGAYW 98
Query: 131 GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI------ 184
G + AA+++AL D AK +MPL++L GG S I
Sbjct: 99 R------RGPVGMTALAAIDVALWDIKAKLANMPLYQLLGGKSRE-----RILSYTHANG 147
Query: 185 VSPAEAAELASKYRKQGFTTLKLKVG---------------------------------K 211
E K + +G+ ++++ G K
Sbjct: 148 KDLDSTLEAVRKAKDKGYKAIRVQCGIPGIAKTYGVSTNTKSYEPADADLPSVEVWSTEK 207
Query: 212 NLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 270
L +V A+R PD + D + P EA + + L E V ++
Sbjct: 208 YLNYIPDVFAAVRKEFGPDIHLLHDVHHRLTPIEAARLGKALEPYH--LFWMEDAVPAEN 265
Query: 271 WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
E + + +A E S+ D +++++ D I + G
Sbjct: 266 QESFKLI----RQHTTTPLAVGEVFNSIHDCRELIQNQWIDYIRTTIVHAG 312
|
| >3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4fi4_A 3thu_A Length = 425 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 1e-16
Identities = 47/286 (16%), Positives = 92/286 (32%), Gaps = 58/286 (20%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVF 130
++I +G G G+A + + + ++ ++ GS +
Sbjct: 43 LKITTEDGITGVGDATLNGRELSV---VSFLQDHMVPSLIGRDAHQIEDIWQFFYRGSYW 99
Query: 131 GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-ITTDITIPIVSPAE 189
G + AAV+MAL D K +P+++L GG T +T + +
Sbjct: 100 R------GGPVAMTALAAVDMALWDIKGKVAGLPVYQLLGGACRTGVTVYGHANGETIED 153
Query: 190 AAELASKYRKQGFTTLKLKVG---------------------------------KNLKED 216
A KY+ G+ ++L+ G K L
Sbjct: 154 TIAEAVKYKAMGYKAIRLQTGVPGLASTYGVSKDKMFYEPADNDLPTENIWSTAKYLNSV 213
Query: 217 IEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLG 275
++ R + D + D + P EA + + L E V ++ G
Sbjct: 214 PKLFERAREVLGWDVHLLHDVHHRLTPIEAARLGKDLEPYR--LFWLEDSVPAENQAGFR 271
Query: 276 HVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
+ + +A E + D K++++ L D + + G
Sbjct: 272 LI----RQHTTTPLAVGEIFAHVWDAKQLIEEQLIDYLRATVLHAG 313
|
| >3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified} Length = 410 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 2e-16
Identities = 42/297 (14%), Positives = 87/297 (29%), Gaps = 73/297 (24%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP---------AMALGSV 129
+ +E +G G GE A++ A ++ + +
Sbjct: 23 VEVETEDGLTGLGETFRGAQAVE-----AVLHEQTAPAIIGRAAENITSISSELLNPYVG 77
Query: 130 FGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-------------- 175
FG +AV++AL D + +PL GG +
Sbjct: 78 FG------SSSAEVRAASAVDIALWDLAGQRAGVPLHVALGGAARDRVPVYATCAGYDFN 131
Query: 176 --------------ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG----------- 210
T + +A LA +G+ +K+
Sbjct: 132 TSLGGRRSIGSAELSTGPYDDQVAFMRDAGVLAESLVAEGYAAMKIWPFDDFASITPHHI 191
Query: 211 --KNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKL--YEMGVTPVLFEQP 265
+LK+ +E R IR AV + + + + A + L Y + E P
Sbjct: 192 SLTDLKDGLEPFRKIRAAVGQRIEIMCELHSLWGTHAAARICNALADYG----VLWVEDP 247
Query: 266 VHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
+ + D+ + + + + + E+ +++ + D + + L G
Sbjct: 248 IAKMDNIPAVADL----RRQTRAPICGGENLAGTRRFHEMLCADAIDFVMLDLTWCG 300
|
| >3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A* Length = 418 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 3e-16
Identities = 56/286 (19%), Positives = 92/286 (32%), Gaps = 58/286 (20%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVF 130
++IE G G G+A + + A ++ A ++ P + G+ +
Sbjct: 36 LKIETDQGVYGIGDATLNGRELSV---VAYLQEHVAPCLIGMDPRRIEDIWQYVYRGAYW 92
Query: 131 GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-ITTDITIPIVSPAE 189
G AAV+MAL D AK MPL++L GG S I AE
Sbjct: 93 R------RGPVTMRAIAAVDMALWDIKAKMAGMPLYQLLGGRSRDGIMVYGHANGSDIAE 146
Query: 190 AAELASKYRKQGFTTLKLKVG---------------------------------KNLKED 216
E Y G+ ++ + G K L
Sbjct: 147 TVEAVGHYIDMGYKAIRAQTGVPGIKDAYGVGRGKLYYEPADASLPSVTGWDTRKALNYV 206
Query: 217 IEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLG 275
++ +R D + D + Y PQEA + + L E ++ E
Sbjct: 207 PKLFEELRKTYGFDHHLLHDGHHRYTPQEAANLGKMLEPYQ--LFWLEDCTPAENQEAFR 264
Query: 276 HVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
V + +A E ++ D K +++ L D I + G
Sbjct: 265 LV----RQHTVTPLAVGEIFNTIWDAKDLIQNQLIDYIRATVVGAG 306
|
| >4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A Length = 400 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 1e-15
Identities = 46/301 (15%), Positives = 85/301 (28%), Gaps = 82/301 (27%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-----ESPA--------MA 125
+ + G G GE V E + P +
Sbjct: 20 VLVHTDEGITGLGETFFGAETVE-----TYVH-----EYIAPRVIGRDPLQIDLLAQDLV 69
Query: 126 LGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT---------- 175
F +A ++AL D K+ + P+ +L GG S
Sbjct: 70 GYLGFR------SSGAEVRGNSAFDIALWDIFGKATNQPIAQLLGGFSRREIRTYNTCAG 123
Query: 176 ------------------ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG------- 210
D A ELA + G T +K+
Sbjct: 124 TEYIKKATGQQTANYGLSGGKDYDDLNGFLHRADELAHSLLEDGITAMKIWPFDAAAEKT 183
Query: 211 -------KNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKL--YEMGVTPV 260
+LK +E IR AV +++ + ++ A+++ + L Y+
Sbjct: 184 RGQYISMPDLKSALEPFEKIRKAVGDKMDIMVEFHSMWQLLPAMQIAKALTPYQ----TF 239
Query: 261 LFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV 320
E P+ D L ++A E+ S + +++ A V+ + ++
Sbjct: 240 WHEDPIKMDSLSSLTRY----AAVSPAPISASETLGSRWAFRDLLETGAAGVVMLDISWC 295
Query: 321 G 321
G
Sbjct: 296 G 296
|
| >4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp} Length = 426 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 2e-15
Identities = 52/290 (17%), Positives = 97/290 (33%), Gaps = 64/290 (22%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVF 130
++I +G G G+A + + + +++ G+ +
Sbjct: 42 LKITTDSGLTGLGDATLNGRELP---VASYLNDHVCPQLIGRDAHQIEDIWQYFYKGAYW 98
Query: 131 GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-ITTDITIPIVSPAE 189
G S +AV+MAL D AK+ +MPL++L GG S T + S E
Sbjct: 99 R------RGPVTMSAISAVDMALWDIKAKAANMPLYQLLGGASRTGVMVYCHTTGHSIDE 152
Query: 190 AAELASKYRKQGFTTLKLKVG-----------------------------------KNLK 214
+ +K+R QGF ++++ G K L
Sbjct: 153 VLDDYAKHRDQGFKAIRVQCGVPGMETTYGMAKGKGLAYEPATKGSLPEEQLWSTEKYLD 212
Query: 215 EDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKL--YEMGVTPVLFEQPVHRDDW 271
++ A+R + + D + P EA + + Y E P ++
Sbjct: 213 FTPKLFEAVRDKFGFNEHLLHDMHHRLTPIEAARFGKSVEDYR----LFWMEDPTPAENQ 268
Query: 272 EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 321
+ + +A E S+ D K++++ L D I + G
Sbjct: 269 ACFRLI----RQHTVTPIAVGEVFNSIWDCKQLIEEQLIDYIRTTITHAG 314
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 4e-06
Identities = 70/459 (15%), Positives = 122/459 (26%), Gaps = 174/459 (37%)
Query: 41 TQTFTVDVQRAEN-----RPLNVPLIAPFT---IATSRLDQVENVAIRIELSNGCVGWGE 92
T+ + R N NV + P+ A L +NV I +G +G G+
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI-----DGVLGSGK 163
Query: 93 APVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMA 152
+ A + C K M +F + S +EM
Sbjct: 164 T-WV--------------ALDVCLSYKVQCKMDFK-IFWLNLK-----NCNSPETVLEM- 201
Query: 153 LIDAVAKSVSMPLWRLFGGVSNTITT--DITIPIVSPAEAAE------LASK-YRK---- 199
L +L + T+ D + I + + L SK Y
Sbjct: 202 ------------LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 200 ----------QGF--------TTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYK 241
F TT +V + A + +
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTT----------RFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 242 PQEAVEVLEKLYEM----------GVTPVLF--------EQPVHRDDWEGLGHVSHIAKD 283
P E +L K + P + D+W+ H+ D
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK------HVNCD 353
Query: 284 KFGVSVAADESCRSLD--DVKKIVKGNLA----DVINIKLAKVGVLGAL---------EI 328
K ++ + S L+ + +K+ L+ +I +L + +
Sbjct: 354 K--LTTIIESSLNVLEPAEYRKMFD-RLSVFPPSA-HIPTI---LLSLIWFDVIKSDVMV 406
Query: 329 I--EVVRAS--------------GLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI---DL 369
+ ++ + S + L + +E A+ H S + + D
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL----HRSI-VDHYNIPKTFDS 461
Query: 370 DTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408
D + P LD Y Y GH H NI
Sbjct: 462 DDLI----PPYLDQY-----FYSHI---GH----HLKNI 484
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 409 | |||
| 3r0u_A | 379 | Enzyme of enolase superfamily; structural genomics | 100.0 | |
| 3q45_A | 368 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3u9i_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 100.0 | |
| 3s5s_A | 389 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3ik4_A | 365 | Mandelate racemase/muconate lactonizing protein; s | 100.0 | |
| 3dgb_A | 382 | Muconate cycloisomerase; muconate lactonizing enzy | 100.0 | |
| 3i4k_A | 383 | Muconate lactonizing enzyme; structural genomics, | 100.0 | |
| 3ro6_B | 356 | Putative chloromuconate cycloisomerase; TIM barrel | 100.0 | |
| 3fcp_A | 381 | L-Ala-D/L-Glu epimerase, A muconate lactonizing en | 100.0 | |
| 3i6e_A | 385 | Muconate cycloisomerase I; structural genomics, NY | 100.0 | |
| 3dg3_A | 367 | Muconate cycloisomerase; muconate lactonizing enzy | 100.0 | |
| 3my9_A | 377 | Muconate cycloisomerase; structural genomics, PSI- | 100.0 | |
| 3fv9_G | 386 | Mandelate racemase/muconate lactonizing enzyme; st | 100.0 | |
| 3eez_A | 378 | Putative mandelate racemase/muconate lactonizing e | 100.0 | |
| 3jva_A | 354 | Dipeptide epimerase; enolase superfamily, isomeras | 100.0 | |
| 2chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Cupriavidus | 100.0 | |
| 4e8g_A | 391 | Enolase, mandelate racemase/muconate lactonizing e | 100.0 | |
| 1chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Ralstonia eu | 100.0 | |
| 3ozy_A | 389 | Putative mandelate racemase; beta-alpha barrel, en | 100.0 | |
| 1tkk_A | 366 | Similar to chloromuconate cycloisomerase; epimeras | 100.0 | |
| 3gd6_A | 391 | Muconate cycloisomerase; structural genomics, NYSG | 100.0 | |
| 3qld_A | 388 | Mandelate racemase/muconate lactonizing protein; s | 100.0 | |
| 4h2h_A | 376 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 1nu5_A | 370 | Chloromuconate cycloisomerase; enzyme, dehalogenat | 100.0 | |
| 2p8b_A | 369 | Mandelate racemase/muconate lactonizing enzyme fam | 100.0 | |
| 4hpn_A | 378 | Putative uncharacterized protein; enolase, enzyme | 100.0 | |
| 2qde_A | 397 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3toy_A | 383 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3ddm_A | 392 | Putative mandelate racemase/muconate lactonizing e | 100.0 | |
| 3mwc_A | 400 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 4dwd_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 100.0 | |
| 4dye_A | 398 | Isomerase; enolase family protein, EFI, enzym func | 100.0 | |
| 4h83_A | 388 | Mandelate racemase/muconate lactonizing enzyme; st | 100.0 | |
| 3tj4_A | 372 | Mandelate racemase; enolase, dehydratase, enzyme f | 100.0 | |
| 1wue_A | 386 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3sjn_A | 374 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 2qdd_A | 378 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 3ugv_A | 390 | Enolase; enzyme function initiative, EFI, lyase; 2 | 100.0 | |
| 1wuf_A | 393 | Hypothetical protein LIN2664; structural genomics, | 100.0 | |
| 2ps2_A | 371 | Putative mandelate racemase/muconate lactonizing e | 100.0 | |
| 4e4u_A | 412 | Mandalate racemase/muconate lactonizing enzyme; ma | 100.0 | |
| 3vc5_A | 441 | Mandelate racemase/muconate lactonizing protein; d | 100.0 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 100.0 | |
| 3vdg_A | 445 | Probable glucarate dehydratase; enolase, magnesium | 100.0 | |
| 4e5t_A | 404 | Mandelate racemase / muconate lactonizing enzyme, | 100.0 | |
| 4h1z_A | 412 | Enolase Q92ZS5; dehydratase, magnesium binding sit | 100.0 | |
| 2zad_A | 345 | Muconate cycloisomerase; muconate lactonizing enzy | 100.0 | |
| 3rcy_A | 433 | Mandelate racemase/muconate lactonizing enzyme-LI | 100.0 | |
| 3sbf_A | 401 | Mandelate racemase / muconate lactonizing enzyme; | 100.0 | |
| 3mkc_A | 394 | Racemase; metabolic process, PSI2, NYSGXRC, struct | 100.0 | |
| 3mqt_A | 394 | Mandelate racemase/muconate lactonizing protein; P | 100.0 | |
| 1r0m_A | 375 | N-acylamino acid racemase; isomerase; 1.30A {Deino | 100.0 | |
| 3v3w_A | 424 | Starvation sensing protein RSPA; enolase, enzyme f | 100.0 | |
| 3tji_A | 422 | Mandelate racemase/muconate lactonizing enzyme, N | 100.0 | |
| 3r4e_A | 418 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 2zc8_A | 369 | N-acylamino acid racemase; octamer, TIM beta/alpha | 100.0 | |
| 1sjd_A | 368 | N-acylamino acid racemase; lyase, isomerase; HET: | 100.0 | |
| 3va8_A | 445 | Probable dehydratase; enolase, magnesium binding s | 100.0 | |
| 3t6c_A | 440 | RSPA, putative MAND family dehydratase; enolase, m | 100.0 | |
| 3vcn_A | 425 | Mannonate dehydratase; enolase, magnesium binding | 100.0 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 100.0 | |
| 4hnl_A | 421 | Mandelate racemase/muconate lactonizing enzyme; de | 100.0 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 100.0 | |
| 3bjs_A | 428 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 2gdq_A | 382 | YITF; mandelate racemase/muconate lactonizing enzy | 100.0 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 100.0 | |
| 3ijl_A | 338 | Muconate cycloisomerase; enolase superfamily, dipe | 100.0 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 100.0 | |
| 3v5c_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 3rr1_A | 405 | GALD, putative D-galactonate dehydratase; enolase, | 100.0 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 100.0 | |
| 3cyj_A | 372 | Mandelate racemase/muconate lactonizing enzyme-LI | 100.0 | |
| 3go2_A | 409 | Putative L-alanine-DL-glutamate epimerase; structu | 100.0 | |
| 4dxk_A | 400 | Mandelate racemase / muconate lactonizing enzyme p | 100.0 | |
| 3p0w_A | 470 | Mandelate racemase/muconate lactonizing protein; s | 100.0 | |
| 4e4f_A | 426 | Mannonate dehydratase; magnesium binding, enzyme f | 100.0 | |
| 3stp_A | 412 | Galactonate dehydratase, putative; PSI biology, st | 100.0 | |
| 3mzn_A | 450 | Glucarate dehydratase; lyase, structural genomics, | 100.0 | |
| 3dip_A | 410 | Enolase; structural genomics, isomerase, PSI-2, pr | 100.0 | |
| 1rvk_A | 382 | Isomerase/lactonizing enzyme; enolase superfamily, | 100.0 | |
| 3tcs_A | 388 | Racemase, putative; PSI-biology, nysgrc, structura | 100.0 | |
| 3pfr_A | 455 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 2og9_A | 393 | Mandelate racemase/muconate lactonizing enzyme; NY | 100.0 | |
| 2pp0_A | 398 | L-talarate/galactarate dehydratase; enolase superf | 100.0 | |
| 4a35_A | 441 | Mitochondrial enolase superfamily member 1; isomer | 100.0 | |
| 2o56_A | 407 | Putative mandelate racemase; dehydratase, structur | 100.0 | |
| 2poz_A | 392 | Putative dehydratase; octamer, structural genomics | 100.0 | |
| 2gl5_A | 410 | Putative dehydratase protein; structural genomics, | 100.0 | |
| 2ox4_A | 403 | Putative mandelate racemase; enolase, dehydratase, | 100.0 | |
| 2pge_A | 377 | MENC; OSBS, NYSGXRC, PSI-II, structural genomics, | 100.0 | |
| 4g8t_A | 464 | Glucarate dehydratase; enolase, enzyme function IN | 100.0 | |
| 2okt_A | 342 | OSB synthetase, O-succinylbenzoic acid synthetase; | 100.0 | |
| 2oz8_A | 389 | MLL7089 protein; structural genomics, unknown func | 100.0 | |
| 3p3b_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 2qq6_A | 410 | Mandelate racemase/muconate lactonizing enzyme- li | 100.0 | |
| 2hzg_A | 401 | Mandelate racemase/muconate lactonizing enzyme/EN | 100.0 | |
| 1tzz_A | 392 | Hypothetical protein L1841; structural genomics, m | 100.0 | |
| 3ekg_A | 404 | Mandelate racemase/muconate lactonizing enzyme; st | 100.0 | |
| 3fxg_A | 455 | Rhamnonate dehydratase; structural gemomics, enola | 100.0 | |
| 3caw_A | 330 | O-succinylbenzoate synthase; structural genomics, | 100.0 | |
| 4gfi_A | 329 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 2hxt_A | 441 | L-fuconate dehydratase; enolase superfamily, D-ery | 100.0 | |
| 1jpd_X | 324 | L-Ala-D/L-Glu epimerase; enolase superfamily, muco | 100.0 | |
| 2p3z_A | 415 | L-rhamnonate dehydratase; enolase, structural geno | 100.0 | |
| 1r6w_A | 322 | OSB synthase, O-succinylbenzoate synthase, OSBS; e | 100.0 | |
| 1kcz_A | 413 | Beta-methylaspartase; beta zigzag, alpha/beta-barr | 100.0 | |
| 1kko_A | 413 | 3-methylaspartate ammonia-lyase; enolase superfami | 100.0 | |
| 2ozt_A | 332 | TLR1174 protein; structural genomics, O-succinylbe | 100.0 | |
| 2pa6_A | 427 | Enolase; glycolysis, lyase, magnesium, metal-bindi | 100.0 | |
| 2opj_A | 327 | O-succinylbenzoate-COA synthase; TIM barrel, struc | 100.0 | |
| 2fym_A | 431 | Enolase; RNA degradosome, enolase, lyase; 1.60A {E | 100.0 | |
| 1w6t_A | 444 | Enolase; bacterial infection, surface protein, moo | 100.0 | |
| 2ptz_A | 432 | Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypano | 100.0 | |
| 3uj2_A | 449 | Enolase 1; enzyme function initiative, EFI, lyase; | 100.0 | |
| 3tqp_A | 428 | Enolase; energy metabolism, lyase; 2.20A {Coxiella | 100.0 | |
| 3qn3_A | 417 | Enolase; structural genomics, center for structura | 100.0 | |
| 2al1_A | 436 | Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: | 100.0 | |
| 2akz_A | 439 | Gamma enolase, neural; fluoride inhibition, negati | 100.0 | |
| 3qtp_A | 441 | Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Ent | 99.95 | |
| 3otr_A | 452 | Enolase; structural genomics, center for structura | 99.93 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 98.39 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 98.27 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 98.22 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 98.12 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 98.11 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 98.11 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 97.99 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 97.98 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 97.72 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 97.69 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 97.56 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 97.56 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 97.52 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 97.33 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 96.8 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 96.76 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 96.51 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 96.35 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 96.23 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 96.19 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 95.92 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 95.13 | |
| 3noy_A | 366 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 94.98 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 94.5 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 93.75 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 93.72 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 93.62 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 93.58 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 93.52 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 93.43 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 93.03 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 92.37 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 91.72 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 91.68 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 91.41 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 91.3 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 91.15 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 90.38 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 90.12 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 89.97 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 89.96 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 89.62 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 89.56 | |
| 4a3u_A | 358 | NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET | 89.45 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 89.39 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 89.19 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 89.14 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 89.09 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 88.04 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 87.6 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 87.51 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 87.4 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 87.39 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 86.99 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 86.37 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 86.04 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 85.07 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 85.01 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 84.62 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 84.57 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 84.53 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 84.49 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 84.22 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 83.82 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 83.78 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 83.57 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 83.23 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 83.08 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 82.74 | |
| 4djd_D | 323 | C/Fe-SP, corrinoid/iron-sulfur protein small subun | 82.49 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 81.7 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 81.62 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 81.25 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 80.94 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 80.74 | |
| 3i4e_A | 439 | Isocitrate lyase; structural genomics, seattle str | 80.32 |
| >3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-79 Score=607.67 Aligned_cols=357 Identities=23% Similarity=0.358 Sum_probs=334.6
Q ss_pred eeeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHcCCC
Q 015289 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESP 122 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (409)
|+|||++|+++++++|++.||+++.++.+.++.++|||+|++|++||||+.+.+.+++|+.+.+...+++ +.|.++|++
T Consensus 1 m~MkI~~i~~~~~~~Pl~~p~~~a~~~~~~~~~~~V~v~td~G~~G~Ge~~~~~~~~get~~~~~~~i~~~l~p~l~G~d 80 (379)
T 3r0u_A 1 MVSKIIDIKTSIIKIPLKRTFITAVRSTNHIDSLAVELTLDNGVKGYGVAPATTAITGDTLQGMQYIIREIFAPVILGSD 80 (379)
T ss_dssp -CCBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEEECCHHHHCCCHHHHHHHHHHTTHHHHTTCB
T ss_pred CCCEEEEEEEEEEEeecCCceEccCceEEEeEEEEEEEEECCCCEEEEEEECCCCccCCCHHHHHHHHHHHhHHHhcCCC
Confidence 5699999999999999999999999999999999999999999999999998766777877666666665 789999999
Q ss_pred CCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHcCC
Q 015289 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGF 202 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf 202 (409)
+.+++.+|+.+++...++ .+|++||||||||++||.+|+|||+||||.+++|++|.+++..+++++.+++++++++||
T Consensus 81 ~~~~~~~~~~~~~~~~~~--~~A~said~ALwDl~gK~~g~Pv~~LLGg~r~~v~~y~t~g~~~~e~~~~~a~~~~~~Gf 158 (379)
T 3r0u_A 81 LSDYKQTLELAFKKVMFN--SAAKMAIDLAYHDLLAKEQDISVAKLLGAKANSIVTDVSISCGNVAETIQNIQNGVEANF 158 (379)
T ss_dssp GGGHHHHHHHHHTTCSSC--HHHHHHHHHHHHHHHHHHTTSBHHHHTTCCCCEEEBCEEECCCCHHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHhcccc--hHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCeEEEEEEecCCCHHHHHHHHHHHHHcCC
Confidence 999999999998765543 468999999999999999999999999999889999999999999999999999999999
Q ss_pred CeEEEecCCChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHh--CCCCCceeecCCCCCCHHHHHHhHH
Q 015289 203 TTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE--MGVTPVLFEQPVHRDDWEGLGHVSH 279 (409)
Q Consensus 203 ~~~KiKvG~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~--~~l~~~~iEeP~~~~d~~~~~~l~~ 279 (409)
++||+|+|.++++|++++++||++ ++++.|++|+|++|++++|+++++.|++ +++ .|||||++++|++++++|++
T Consensus 159 ~~~KlK~g~~~~~d~~~v~avR~a~g~~~~L~vDaN~~w~~~~A~~~~~~l~~~~~~l--~~iEeP~~~~d~~~~~~l~~ 236 (379)
T 3r0u_A 159 TAIKVKTGADFNRDIQLLKALDNEFSKNIKFRFDANQGWNLAQTKQFIEEINKYSLNV--EIIEQPVKYYDIKAMAEITK 236 (379)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHHHCCTTSEEEEECTTCCCHHHHHHHHHHHHTSCCCE--EEEECCSCTTCHHHHHHHHH
T ss_pred CEEeeecCCCHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCCc--EEEECCCCcccHHHHHHHHh
Confidence 999999999999999999999998 6799999999999999999999999999 665 69999999999999999975
Q ss_pred HhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHH
Q 015289 280 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLS 358 (409)
Q Consensus 280 ~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hla 358 (409)
++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||++++++++|++
T Consensus 237 ----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGi~~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~hla 312 (379)
T 3r0u_A 237 ----FSNIPVVADESVFDAKDAERVIDEQACNMINIKLAKTGGILEAQKIKKLADSAGISCMVGCMMESPAGILATASFA 312 (379)
T ss_dssp ----HCSSCEEESTTCSSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCSCCHHHHHHHHHHH
T ss_pred ----cCCCCEEeCCccCCHHHHHHHHHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCEEEEeCCCccHHHHHHHHHHH
Confidence 67899999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred ccCCCCceeccccccccccCCCCCCeeeeCcEEecCC-CCCcccccCCCCcC
Q 015289 359 AGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTN-ARGHGGFLHWDNIA 409 (409)
Q Consensus 359 aa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~-~PGlG~~~d~d~~~ 409 (409)
++ ||+.+.|++++..+.+|+++++++++||++.+|+ +||||+++|+|.|+
T Consensus 313 aa-p~~~~~eld~~~~~~~d~~~~~~~~~~G~i~~p~~~PGLGveld~~~~~ 363 (379)
T 3r0u_A 313 LA-EDITVADLDPLDWVAKDLYSDYITFNEPNIILKDNLKGFGFNLAENLYF 363 (379)
T ss_dssp HH-TTCCCBCCGGGGGSCGGGTTTTEEEETTEEEECTTCSBTSCCCHHHHTC
T ss_pred hC-CCCCeeecCchhhhhhccccCCceEECCEEEcCCCCCccceeECHHHHh
Confidence 99 9999999999988889999999999999999999 89999999999875
|
| >3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-77 Score=597.68 Aligned_cols=356 Identities=27% Similarity=0.457 Sum_probs=336.3
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (409)
|||++|+++++++|++.||+++.++.+.++.++|||+|++|++||||+.+.+.+++|+.+.+...++.+.|.++|+++.+
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~l~~~l~G~d~~~ 80 (368)
T 3q45_A 1 MIITQVELYKSPVKLKEPFKISLGILTHANNVIVRIHTASGHIGYGECSPFMTIHGESMDTAFIVGQYLAKGLIGTSCLD 80 (368)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTCCEEEEEECCCHHHHSCCHHHHHHHHHHHHHHHTTSBTTC
T ss_pred CEEEEEEEEEEEeecCCCEEccCceEeeeeEEEEEEEECCCCEEEeeccCCCCcCCCCHHHHHHHHHHHHHHhcCCChhh
Confidence 89999999999999999999999999999999999999999999999998777777877766666677899999999999
Q ss_pred HHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCee-eeeeeecCCCHHHHHHHHHHHHHcCCCe
Q 015289 126 LGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTI-TTDITIPIVSPAEAAELASKYRKQGFTT 204 (409)
Q Consensus 126 ~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i-~~~~~i~~~~~~~~~~~~~~~~~~Gf~~ 204 (409)
++.+|+.+++.+.++ .+|++||||||||++||..|+|+|+||||.++++ ++|++++..+++++.+++++++++||++
T Consensus 81 ~~~~~~~l~~~~~~~--~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~v~~~~~~~~~~~~e~~~~~a~~~~~~G~~~ 158 (368)
T 3q45_A 81 IVSNSLLMDAIIYGN--SCIKSAFNIALYDLAAQHAGLPLYAFLGGKKDKIIQTDYTVSIDEPHKMAADAVQIKKNGFEI 158 (368)
T ss_dssp HHHHHHHHHHHCSCC--HHHHHHHHHHHHHHHHHHHTSBHHHHTTCCCCSCEEBCEEECSCCHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCeeeeeEEEecCCCHHHHHHHHHHHHHcCCCe
Confidence 999999998877655 4689999999999999999999999999998889 9999999999999999999999999999
Q ss_pred EEEecCCChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhc
Q 015289 205 LKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283 (409)
Q Consensus 205 ~KiKvG~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~ 283 (409)
||+|+|.++++|++++++||++ ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|++
T Consensus 159 ~K~KvG~~~~~d~~~v~avR~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEqP~~~~~~~~~~~l~~---- 232 (368)
T 3q45_A 159 IKVKVGGSKELDVERIRMIREAAGDSITLRIDANQGWSVETAIETLTLLEPYNI--QHCEEPVSRNLYTALPKIRQ---- 232 (368)
T ss_dssp EEEECCSCHHHHHHHHHHHHHHHCSSSEEEEECTTCBCHHHHHHHHHHHGGGCC--SCEECCBCGGGGGGHHHHHH----
T ss_pred EEEEecCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCChHHHHHHHHHHhhcCC--CEEECCCChhHHHHHHHHHh----
Confidence 9999999999999999999998 7999999999999999999999999999987 49999999999999999874
Q ss_pred cCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCC
Q 015289 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLG 362 (409)
Q Consensus 284 ~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~ 362 (409)
++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||++++++++|+++++|
T Consensus 233 ~~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~~es~i~~aa~~hlaaa~p 312 (368)
T 3q45_A 233 ACRIPIMADESCCNSFDAERLIQIQACDSFNLKLSKSAGITNALNIIRLAEQAHMPVQVGGFLESRLGFTAAAHVALVSK 312 (368)
T ss_dssp TCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECTTTTTSHHHHHHHHHHHHHTTCCEEECCSSCCHHHHHHHHHHHTTCT
T ss_pred hCCCCEEEcCCcCCHHHHHHHHHcCCCCeEEechhhcCCHHHHHHHHHHHHHcCCcEEecCccccHHHHHHHHHHHHcCC
Confidence 68999999999999999999999999999999999997 99999999999999999999999999999999999999999
Q ss_pred CCceeccccccccccCCCCCCeeeeCc-EEecCCCCCcccccCCCCcC
Q 015289 363 CFKFIDLDTPLLLSEDPVLDGYEVSGA-VYKFTNARGHGGFLHWDNIA 409 (409)
Q Consensus 363 ~~~~~e~~~p~~~~~d~~~~~~~~~~G-~i~~p~~PGlG~~~d~d~~~ 409 (409)
|+.++|+++++.+.+|++.+++.++|| ++.+|++||||+++|+++|+
T Consensus 313 ~~~~~el~~~~~~~~d~~~~~~~~~~gG~i~~p~~PGlGv~~d~~~l~ 360 (368)
T 3q45_A 313 TICYYDFDTPLMFEADPVRGGIVYQQRGIIEVPETAGLGAGYQKDYLS 360 (368)
T ss_dssp TEEEECCCGGGGBSSCCEEESCEECGGGEEECCCSSBSCEEECTTTGG
T ss_pred CCceeccccHHhhhhccccCCceecCCeEEEcCCCCccceeeCHHHHH
Confidence 999999999988888998888899998 99999999999999999874
|
| >3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, PSI-biology; 2.90A {Roseiflexus SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-78 Score=607.06 Aligned_cols=354 Identities=36% Similarity=0.585 Sum_probs=317.0
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (409)
|||++|+++++++|++.||+++.++.+.++.++|||+|++|++||||+.+.+.+++|+.+.+...++.+.|.|+|+++.+
T Consensus 27 mkI~~i~~~~~~~Pl~~p~~~a~g~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~l~~l~p~l~G~d~~~ 106 (393)
T 3u9i_A 27 TTIRALTVAPLDIPLHEPFGIASGAQEVARNLLVAVELTDGTRGYGEAAPFPAFNGETQDMAHAAILAARSLVEGADVRE 106 (393)
T ss_dssp TBEEEEEEEEEEEEBCC----------EEEEEEEEEEETTSCEEEEEECCCHHHHSCCHHHHHHHHHHTHHHHTTSBGGG
T ss_pred cEEEEEEEEEEEEecCCceEccCceEEeeeEEEEEEEECCCCEEEEEeeCCCCcCcCCHHHHHHHHHHHHHHhcCCCcCC
Confidence 89999999999999999999999999999999999999999999999998877778887777766777899999999999
Q ss_pred HHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeE
Q 015289 126 LGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTL 205 (409)
Q Consensus 126 ~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~ 205 (409)
++.+|+.+.+...++ +.|++||||||||++||..|+|||+||||..+++++|++++..+++++.+++++++++||++|
T Consensus 107 ~~~~~~~l~~~~~~~--~~A~said~ALwDl~gK~~g~Pl~~LLGg~~~~v~~~~t~~~~~~e~~~~~a~~~~~~Gf~~i 184 (393)
T 3u9i_A 107 WRRIALALPALPGMT--GSARCAIETAILDALTRRARLPLWAFFGGAATSLETDVTITTGSVTAAARAAQAIVARGVTTI 184 (393)
T ss_dssp HHHHHHHGGGSTTCC--HHHHHHHHHHHHHHHHHHTTCBHHHHTTCSCSEEECCEEEC---CHHHHHHHHHHHTTTCCEE
T ss_pred HHHHHHHHHHhcCcc--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceEEEEEecCCCHHHHHHHHHHHHHcCCCeE
Confidence 999999997755443 568999999999999999999999999999899999999999999999999999999999999
Q ss_pred EEecCCC---------hhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHH--HhCCCCCceeecCCCCCCHHHH
Q 015289 206 KLKVGKN---------LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKL--YEMGVTPVLFEQPVHRDDWEGL 274 (409)
Q Consensus 206 KiKvG~~---------~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L--~~~~l~~~~iEeP~~~~d~~~~ 274 (409)
|+|+|.+ +++|++++++||++.|++.|++|+|++|++++|++++++| +++++ .|||||++++|++++
T Consensus 185 KlKvg~~~~~~~~~~~~~~di~~v~avR~a~~d~~L~vDaN~~w~~~~A~~~~~~L~~~~~~i--~~iEeP~~~~d~~~~ 262 (393)
T 3u9i_A 185 KIKIGAGDPDATTIRTMEHDLARIVAIRDVAPTARLILDGNCGYTAPDALRLLDMLGVHGIVP--ALFEQPVAKDDEEGL 262 (393)
T ss_dssp EEECC-------CHHHHHHHHHHHHHHHHHSTTSEEEEECCSCCCHHHHHHHHHTTTTTTCCC--SEEECCSCTTCTTHH
T ss_pred EEEeCCCcccccccccHHHHHHHHHHHHHHCCCCeEEEEccCCCCHHHHHHHHHHHhhCCCCe--EEEECCCCCCcHHHH
Confidence 9999965 8899999999999988999999999999999999999999 88886 599999999999999
Q ss_pred HHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHH
Q 015289 275 GHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGF 353 (409)
Q Consensus 275 ~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~ 353 (409)
++|++ ++++|||+||++++..+++++++.+++|++|+|+++ | ++++++++++|+++|+++++|||+||++++++
T Consensus 263 ~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~i~~k~~~-GGit~~~~ia~~A~~~gi~~~~~~~~es~ig~aa 337 (393)
T 3u9i_A 263 RRLTA----TRRVPVAADESVASATDAARLARNAAVDVLNIKLMK-CGIVEALDIAAIARTAGLHLMIGGMVESLLAMTV 337 (393)
T ss_dssp HHHHH----TCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHH-HCHHHHHHHHHHHHHHTCEEEECCSSCCHHHHHH
T ss_pred HHHHh----hCCCcEEeCCcCCCHHHHHHHHHcCCCCEEEecccc-cCHHHHHHHHHHHHHcCCeEEecCCcccHHHHHH
Confidence 99975 689999999999999999999999999999999999 8 99999999999999999999999999999999
Q ss_pred HHHHHccCCCCceeccccccccccCCCCCCeeeeCcEEecCC-CCCcccccCCCCc
Q 015289 354 AGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTN-ARGHGGFLHWDNI 408 (409)
Q Consensus 354 ~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~-~PGlG~~~d~d~~ 408 (409)
++||++++||+.+.|+++++.+.+|++.++++++||++.+|+ +||||+++|+++|
T Consensus 338 ~~hlaaa~p~~~~~el~~~~~~~~d~~~~~~~~~~G~i~~p~~~PGlGve~d~~~l 393 (393)
T 3u9i_A 338 SACFAAGQGGFRFVDLDTPLFLAENPFDGGMTYHGGTIDLTLIEAGHGVTPRSPAL 393 (393)
T ss_dssp HHHHHHHHCCEEEECCCGGGSBSCCCEEESCEEETTEEECTTCCSBTCEEEC----
T ss_pred HHHHHhcCCCCCeecccchhhhhhcccCCCceeECCEEECCCCCCcCCcccCcccC
Confidence 999999999999999999988889999888999999999999 9999999999975
|
| >3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-78 Score=605.11 Aligned_cols=358 Identities=40% Similarity=0.620 Sum_probs=331.5
Q ss_pred eeeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCC
Q 015289 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA 123 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~ 123 (409)
..|||++|+++++++|++.||+++.++.+.++.++|||+|++|++||||+.+.+.+++|+...+...++.+.|.++|+++
T Consensus 3 ~~mkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~l~td~G~~G~GE~~~~~~~~~e~~~~~~~~l~~l~~~l~G~d~ 82 (389)
T 3s5s_A 3 TPTLIRRVSIEALDIPLHEPFGIAGGAQERAANLLVTVELADGTLGFGEAAPLPAFNGETQDGSRAAAVSLREAVVGSDA 82 (389)
T ss_dssp CTTBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCCHHHHSCCHHHHHHHHHHTHHHHTTSBG
T ss_pred CCCEEEEEEEEEEEEecCCceeccCceEEeeeEEEEEEEECCCCEEEEeccCCCCcCccCHHHHHHHHHHHHHHhcCCCc
Confidence 34999999999999999999999999999999999999999999999999988777788877776667778999999999
Q ss_pred CCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHcCCC
Q 015289 124 MALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFT 203 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~ 203 (409)
.+++.+|+.+.+...++. ..|++||||||||++||..|+|||+||||..+++++|++++..+++++.+++++++++||+
T Consensus 83 ~~~~~~~~~l~~~~~~~~-~~A~said~ALwDl~gk~~g~Pl~~LLGg~~~~v~~~~t~~~~~~e~~~~~a~~~~~~G~~ 161 (389)
T 3s5s_A 83 RAWRAVARALREASGGGA-GAARCAIETAILDALTKRAGMPLWAFFGGSGTALTTDITITTGSPERAEEAARRAAAMGFR 161 (389)
T ss_dssp GGHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHTTTCBHHHHTTCSCSEEECCEEECSSCSHHHHHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHhhccCh-HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceEEEeeecCCCHHHHHHHHHHHHHcCCC
Confidence 999999999987655443 2689999999999999999999999999998899999999999999999999999999999
Q ss_pred eEEEecCCC-hhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHH--HhCCCCCceeecCCCCCCHHHHHHhHHH
Q 015289 204 TLKLKVGKN-LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKL--YEMGVTPVLFEQPVHRDDWEGLGHVSHI 280 (409)
Q Consensus 204 ~~KiKvG~~-~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L--~~~~l~~~~iEeP~~~~d~~~~~~l~~~ 280 (409)
+||+|+|.+ +++|++++++||++.|+..|++|+|++|++++|++++++| +++++ .|||||++++|++++++|++
T Consensus 162 ~iKlKvg~~~~~~d~~~v~avR~~~~~~~L~vDaN~~w~~~~A~~~~~~L~~~~~~i--~~iEeP~~~~d~~~~~~l~~- 238 (389)
T 3s5s_A 162 ALKVKVGGRLAASDPARIEAIHAAAPGASLILDGNGGLTAGEALALVAHARRLGADV--ALLEQPVPRDDWDGMKEVTR- 238 (389)
T ss_dssp EEEEECCGGGTTTHHHHHHHHHHHCTTCEEEEECTTCSCHHHHHHHHHHHHHTTCEE--EEEECCSCTTCHHHHHHHHH-
T ss_pred eEEEEecCCChHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhhCCCCe--EEEECCCCcccHHHHHHHHh-
Confidence 999999965 8899999999999988899999999999999999999999 77775 59999999999999999975
Q ss_pred hhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHc
Q 015289 281 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSA 359 (409)
Q Consensus 281 ~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaa 359 (409)
++++|||+||++++..+++++++.+++|++|+|+++ | ++++++++++|+++|+++++|||+||++++++++||++
T Consensus 239 ---~~~iPIa~dEs~~~~~~~~~~i~~~a~d~v~~k~~~-GGit~~~~i~~~A~~~gi~~~~~~~~es~ig~aa~~hlaa 314 (389)
T 3s5s_A 239 ---RAGVDVAADESAASAEDVLRVAAERAATVVNIKLMK-GGIAEALDIAAVARAAGLGLMIGGMVESVLAMTASACFAA 314 (389)
T ss_dssp ---HSSSCEEESTTCSSHHHHHHHHHTTCCSEEEECHHH-HHHHHHHHHHHHHHHTTCEEEECCSSCCHHHHHHHHHHHH
T ss_pred ---hCCCCEEECCCCCCHHHHHHHHHcCCCCEEEecCCC-CCHHHHHHHHHHHHHcCCeEEecCCcccHHHHHHHHHHHh
Confidence 678999999999999999999999999999999999 9 99999999999999999999999999999999999999
Q ss_pred cCCCCceeccccccccccCCCCCCeeeeCcEEecCC-CCCcccccCCCCcC
Q 015289 360 GLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTN-ARGHGGFLHWDNIA 409 (409)
Q Consensus 360 a~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~-~PGlG~~~d~d~~~ 409 (409)
++||+.++|+++++.+.+|++.++++++||++.+|+ +||||+++|+|.|+
T Consensus 315 a~p~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~~PGlGve~d~~~~~ 365 (389)
T 3s5s_A 315 GLGGFSFVDLDTPLFLAENPFDGGFVQRGPALSLEGIRAGHGVTPQRRSPA 365 (389)
T ss_dssp HHCCEEEECCCGGGGBSCCCEECSCEEETTEEECTTCCSBTCCEEC-----
T ss_pred hCCCCCeeeccchhhhhhccccCCceeECCEEECCCCCCcCCcccCHHHHh
Confidence 999999999999988889999888999999999999 99999999999874
|
| >3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-76 Score=590.65 Aligned_cols=351 Identities=36% Similarity=0.599 Sum_probs=324.0
Q ss_pred eeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCC
Q 015289 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAM 124 (409)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~ 124 (409)
.|||++|+++++++|++.||.+|.++.+.++.++|||+|++|++||||+.+.+.+++|+...+...++.+.|.++|+++.
T Consensus 4 ~mkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~l~td~G~~G~GE~~~~~~~~~e~~~~~~~~l~~l~~~l~G~d~~ 83 (365)
T 3ik4_A 4 PTTIQAISAEAINLPLTEPFAIASGAQAVAANVLVKVQLADGTLGLGEAAPFPAVSGETQTGTSAAIERLQSHLLGADVR 83 (365)
T ss_dssp TTBEEEEEEEEEEEEBSCC--------CEEEEEEEEEEETTSCEEEEEECCCCTTTCCCHHHHHHHHHHHGGGTTTCBGG
T ss_pred CCEEEEEEEEEEEEecCCCeEccCeEEEeeeEEEEEEEECCCCEEEEecccCCCcCcCCHHHHHHHHHHHHHHHcCCCcc
Confidence 49999999999999999999999999999999999999999999999999988888898877777777789999999999
Q ss_pred CHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHcCCCe
Q 015289 125 ALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTT 204 (409)
Q Consensus 125 ~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~ 204 (409)
+++.+|+.+++...++ ..|++||||||||++||..|+|+|+||||..+++++|++++..+++++.+++++++++||++
T Consensus 84 ~~~~~~~~l~~~~~~~--~~a~said~ALwDl~gk~~g~Pl~~LLGg~~~~v~~~~~~~~~~~e~~~~~a~~~~~~G~~~ 161 (365)
T 3ik4_A 84 GWRKLAAMLDHAEHEA--AAARCGLEMAMLDALTRHYHMPLHVFFGGVSKQLETDMTITAGDEVHAAASAKAILARGIKS 161 (365)
T ss_dssp GHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHTTCBHHHHTTCSCSEEEBCEEECCSCHHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceeeeEEecCCCHHHHHHHHHHHHHcCCCE
Confidence 9999999998766544 46899999999999999999999999999989999999999999999999999999999999
Q ss_pred EEEecCCC-hhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHH--HhCCCCCceeecCCCCCCHHHHHHhHHHh
Q 015289 205 LKLKVGKN-LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKL--YEMGVTPVLFEQPVHRDDWEGLGHVSHIA 281 (409)
Q Consensus 205 ~KiKvG~~-~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L--~~~~l~~~~iEeP~~~~d~~~~~~l~~~~ 281 (409)
||+|+|.+ +++|++++++||++.|+..|++|+|++|++++|+++++.| +++++ .|||||++++|++++++|++
T Consensus 162 iK~Kvg~~~~~~d~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~L~~~~~~i--~~iEeP~~~~d~~~~~~l~~-- 237 (365)
T 3ik4_A 162 IKVKTAGVDVAYDLARLRAIHQAAPTAPLIVDGNCGYDVERALAFCAACKAESIPM--VLFEQPLPREDWAGMAQVTA-- 237 (365)
T ss_dssp EEEECCSSCHHHHHHHHHHHHHHSSSCCEEEECTTCCCHHHHHHHHHHHHHTTCCE--EEEECCSCTTCHHHHHHHHH--
T ss_pred EEEEeCCCCHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhhCCCCc--eEEECCCCcccHHHHHHHHh--
Confidence 99999965 9999999999999988899999999999999999999999 78875 59999999999999999975
Q ss_pred hccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHcc
Q 015289 282 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG 360 (409)
Q Consensus 282 ~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa 360 (409)
++++||++||++++.++++++++.+++|++|+|+++ | ++++++++++|+++|+++++|||+||++++++++||+++
T Consensus 238 --~~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~-GGit~~~~i~~~A~~~gi~~~~~~~~es~ig~aa~~hlaaa 314 (365)
T 3ik4_A 238 --QSGFAVAADESARSAHDVLRIAREGTASVINIKLMK-AGVAEGLKMIAIAQAAGLGLMIGGMVESILAMSFSANLAAG 314 (365)
T ss_dssp --HSSSCEEESTTCSSHHHHHHHHHHTCCSEEEECHHH-HCHHHHHHHHHHHHHHTCEEEECCSSCCHHHHHHHHHHHHH
T ss_pred --hCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEcCCc-cCHHHHHHHHHHHHHcCCeEEecCCcccHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999999 8 999999999999999999999999999999999999999
Q ss_pred CCCCceeccccccccccCCCCCCeeeeCcEEecCCCCCcccccC
Q 015289 361 LGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLH 404 (409)
Q Consensus 361 ~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d 404 (409)
+||+.|.|+++++.+.+|++.++++++||++.+|++||||+|+.
T Consensus 315 ~p~~~~~el~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGve~~ 358 (365)
T 3ik4_A 315 NGGFDFIDLDTPLFIAEHPFIGGFAQTGGTLQLADVAGHGVNLE 358 (365)
T ss_dssp HCCEEEECCCGGGGBSCCSEEESCEEETTEEECCSCSBTCEEEC
T ss_pred CCCCCeeccccchhhhhcccCCCceeECCEEECCCCCccCCCCC
Confidence 99999999999988889999888999999999999999999975
|
| >3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-76 Score=590.98 Aligned_cols=357 Identities=22% Similarity=0.331 Sum_probs=330.4
Q ss_pred eeeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCC--ccCcccHHHHHHHHHH-HHHHHcC
Q 015289 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP--HVTAEDQQTAMVKASE-ACEVLKE 120 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~--~~~~e~~~~~~~~~~~-~~~~l~g 120 (409)
|.|||++|+++.+++|++.||++|.++.+.++.++|||+|++|++||||+.+.+ .|++|+.+.+...+++ +.|.++|
T Consensus 4 m~~~I~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~y~~e~~~~~~~~i~~~l~p~liG 83 (382)
T 3dgb_A 4 HASAIESIETIIVDLPTIRPHKLAMHTMQNQTLVLIRLRCADGIEGLGESTTIGGLAYGNESPDSIKTNIDRFVAPLLIG 83 (382)
T ss_dssp CTTBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEEECSTTTTSSSCCHHHHHHHHHHTHHHHHTT
T ss_pred hhCeeeEEEEEEEeeccCCCeEecCeEEeeeeEEEEEEEECCCCEEEEecccCCCCccCCCCHHHHHHHHHHHHHHHhcC
Confidence 556699999999999999999999999999999999999999999999998763 4777877766666665 7899999
Q ss_pred CCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHH
Q 015289 121 SPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRK 199 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~ 199 (409)
+++.+++.+|+.+++.++|+ ..|++||||||||++||..|+|||+||||. +++||+|++++..+++++.++++++++
T Consensus 84 ~d~~~~~~~~~~l~~~~~g~--~~A~said~ALwDl~gk~~g~Pv~~LLGg~~r~~v~~~~t~~~~~~~~~~~~~~~~~~ 161 (382)
T 3dgb_A 84 QDASNINAAMLRLEQSIRGN--TFAKSGIESALLDAQGKRLGLPVSELLGGRVRDALPVAWTLASGDTAKDIAEAQKMLD 161 (382)
T ss_dssp SBTTCHHHHHHHHHHHCCSC--HHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEEEBCEEECSSCHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCCeeeEEEEecCCChHHHHHHHHHHHH
Confidence 99999999999998877765 468999999999999999999999999997 579999999888889888888888777
Q ss_pred -cCCCeEEEecCC-ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHH
Q 015289 200 -QGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGH 276 (409)
Q Consensus 200 -~Gf~~~KiKvG~-~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~ 276 (409)
+||++||+|+|. ++++|++++++||++ ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++
T Consensus 162 ~~G~~~~KiKvg~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~ 239 (382)
T 3dgb_A 162 LRRHRIFKLKIGAGEVDRDLAHVIAIKKALGDSASVRVDVNQAWDEAVALRACRILGGNGI--DLIEQPISRNNRAGMVR 239 (382)
T ss_dssp TTSCSEEEEECCSSCHHHHHHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHHHHHHTTTC--CCEECCBCTTCHHHHHH
T ss_pred hCCCCEEEEeeCCCCHHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHHHhhcCc--CeeeCCCCccCHHHHHH
Confidence 699999999995 579999999999997 7899999999999999999999999999987 49999999999999999
Q ss_pred hHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHH
Q 015289 277 VSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAG 355 (409)
Q Consensus 277 l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~ 355 (409)
|++ ++++||++||++++.++++++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||++++++++
T Consensus 240 l~~----~~~ipIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~~es~ig~aa~~ 315 (382)
T 3dgb_A 240 LNA----SSPAPIMADESIECVEDAFNLAREGAASVFALKIAKNGGPRATLRTAAIAEAAGIGLYGGTMLEGGIGTLASA 315 (382)
T ss_dssp HHH----HCSSCEEESTTCSSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEECCSCCCHHHHHHHH
T ss_pred HHH----hCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCeEeecCCCccHHHHHHHH
Confidence 875 67899999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred HHHccCCCCce-eccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 356 HLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 356 hlaaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
||+++++|+.+ +|+++|+.+.+|++.++++++||++.+|++||||+++|++.|
T Consensus 316 hlaaa~~~~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 369 (382)
T 3dgb_A 316 HAFLTLNKLSWDTELFGPLLLTEDILAEPPVYRDFHLHVSKAPGLGLSLDEERL 369 (382)
T ss_dssp HHHTTSSCCTTCBCCCHHHHBSCCSBSSCCEEETTEEECCCCSBTSCCBCHHHH
T ss_pred HHHHcCCCCcceeeccchhhhhhcccCCCceeECCEEECCCCCCcCcccCHHHH
Confidence 99999999887 788888778889999999999999999999999999999876
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-76 Score=588.96 Aligned_cols=356 Identities=26% Similarity=0.385 Sum_probs=333.8
Q ss_pred eeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccC--CccCcccHHHHHHHHHH-HHHHHcCC
Q 015289 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKES 121 (409)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~ 121 (409)
.|||++|+++.+++|++.||.++.++.+.++.++|||+||+|++||||+.+. +.|++|+.+.+...+++ +.|.++|+
T Consensus 5 ~MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~p~l~G~ 84 (383)
T 3i4k_A 5 DLTIQKVESRILDVPLIRPHGFATTTSTEQHILLVSVHLENGVIGYGEGVVPGGPWWGGESVETMKALVDGYLAPVLIGR 84 (383)
T ss_dssp CCBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEECCSSSTTTTSCCHHHHHHHHHHTTHHHHTTS
T ss_pred CCEEEEEEEEEEeccccCCeEecceEEEeeeEEEEEEEECCCCEEEEecccCCCCccCCCCHHHHHHHHHhhhhHHHcCC
Confidence 3999999999999999999999999999999999999999999999999876 56888887777666665 78999999
Q ss_pred CCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHHc
Q 015289 122 PAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQ 200 (409)
Q Consensus 122 ~~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~ 200 (409)
++.+++.+|+.+++.+.++ ..|++|||+||||++||.+|+|+|+||||. +++||+|++++..+++++.+++++++++
T Consensus 85 d~~~~~~~~~~l~~~~~~~--~~A~said~ALwDl~gk~~g~Pv~~LLGg~~r~~v~~~~t~~~~~~~~~~~~a~~~~~~ 162 (383)
T 3i4k_A 85 AVSELAGIMADLERVVARA--RYAKAAVDVAMHDAWARSLNVPVRDLLGGTVRDKVDVTWALGVLPLDVAVAEIEERIEE 162 (383)
T ss_dssp BGGGHHHHHHHHHHHCCSC--HHHHHHHHHHHHHHHHHHTTSBGGGGTTCCSCSEEEBCEEECSCCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCCeEEEeEEeeCCCHHHHHHHHHHHHHh
Confidence 9999999999998877665 468999999999999999999999999996 5789999999999999999999998887
Q ss_pred -CCCeEEEecCC-ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHh
Q 015289 201 -GFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 277 (409)
Q Consensus 201 -Gf~~~KiKvG~-~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l 277 (409)
||+++|+|+|. ++++|++++++||++ ++++.|++|+|++|+.++|+++++.|+++++. |||||++++|++++++|
T Consensus 163 ~G~~~~K~Kvg~~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i~--~iEqP~~~~d~~~~~~l 240 (383)
T 3i4k_A 163 FGNRSFKLKMGAGDPAEDTRRVAELAREVGDRVSLRIDINARWDRRTALHYLPILAEAGVE--LFEQPTPADDLETLREI 240 (383)
T ss_dssp HCCSEEEEECCSSCHHHHHHHHHHHHHTTTTTSEEEEECTTCSCHHHHHHHHHHHHHTTCC--EEESCSCTTCHHHHHHH
T ss_pred cCCcEEEEeeCCCCHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCC--EEECCCChhhHHHHHHH
Confidence 99999999996 899999999999998 78999999999999999999999999999974 99999999999999998
Q ss_pred HHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHH
Q 015289 278 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 356 (409)
Q Consensus 278 ~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~h 356 (409)
++ ++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||+++.++++|
T Consensus 241 ~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~h 316 (383)
T 3i4k_A 241 TR----RTNVSVMADESVWTPAEALAVVKAQAADVIALKTTKHGGLLESKKIAAIAEAGGLACHGATSLEGPIGTAASLQ 316 (383)
T ss_dssp HH----HHCCEEEESTTCSSHHHHHHHHHHTCCSEEEECTTTTTSHHHHHHHHHHHHHTTCEEEECCSCCCHHHHHHHHH
T ss_pred Hh----hCCCCEEecCccCCHHHHHHHHHcCCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEeCCCCccHHHHHHHHH
Confidence 75 57899999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred HHccCCCCce-eccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 357 LSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 357 laaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
+++++||+.+ +|+++|+.+.+|++.+++.++||++.+|++||||+++|++.|
T Consensus 317 laaa~p~~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 369 (383)
T 3i4k_A 317 FAASTKAISYGTELFGPQLLKDTYIVQEFEYKDGQVAIPQGPGLGVDVDMDKV 369 (383)
T ss_dssp HHHHCTTEEEEECCCHHHHBSSCSSSSCCCEETTEEECCCSSBTSCCCCHHHH
T ss_pred HHHcCCCCCccccccchhhhhhhccCCCceeeCCEEECCCCCCcceeeCHHHH
Confidence 9999999999 899988777889999999999999999999999999999875
|
| >3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-76 Score=588.51 Aligned_cols=352 Identities=26% Similarity=0.375 Sum_probs=320.5
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHcCCCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPAM 124 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~~ 124 (409)
|||++|+++++++|++.||.+|.++.+.++.++|||+|++|++||||+.+.+.+++|+.+.+...+++ +.|.++|+++.
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~l~~~l~~~l~G~~~~ 80 (356)
T 3ro6_B 1 MKIADIQVRTEHFPLTRPYRIAFRSIEEIDNLIVEIRTADGLLGLGAASPERHVTGETLEACHAALDHDRLGWLMGRDIR 80 (356)
T ss_dssp CBEEEEEEEEEEEEBC----------CEEEEEEEEEEETTSCEEEEEECCCHHHHCCCHHHHHHHHCGGGCTTTTTCBGG
T ss_pred CEEEEEEEEEEEecccCCEEecCeEEEeeeEEEEEEEECCCCEEEecccCCCCcCcCCHHHHHHHHHHHhHHHhcCCCcc
Confidence 89999999999999999999999999999999999999999999999998777777877766666655 78999999999
Q ss_pred CHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHcCCCe
Q 015289 125 ALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTT 204 (409)
Q Consensus 125 ~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~ 204 (409)
+++.+|+.+++.+.++ ..|++|||+||||++||..|+|+|+||||.++++|+|.+++..+++++.+++++++++||++
T Consensus 81 ~~~~~~~~l~~~~~~~--~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~v~~~~~~~~~~~~~~~~~a~~~~~~G~~~ 158 (356)
T 3ro6_B 81 TLPRLCRELAERLPAA--PAARAALDMALHDLVAQCLGLPLVEILGRAHDSLPTSVTIGIKPVEETLAEAREHLALGFRV 158 (356)
T ss_dssp GHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHHTSBHHHHTCCCCSCEEBCEEECSCCHHHHHHHHHHHHHTTCCE
T ss_pred CHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceeeeEEEcCCCHHHHHHHHHHHHHcCCCE
Confidence 9999999998776654 46899999999999999999999999999988999999999999999999999999999999
Q ss_pred EEEecCCChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhc
Q 015289 205 LKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 283 (409)
Q Consensus 205 ~KiKvG~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~ 283 (409)
||+|+|.++++|++++++||++ ++++.|++|+|++|+.++|+++++.|+++++. |||||++++|++++++|++
T Consensus 159 ~K~K~G~~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~--~iEqP~~~~d~~~~~~l~~---- 232 (356)
T 3ro6_B 159 LKVKLCGDEEQDFERLRRLHETLAGRAVVRVDPNQSYDRDGLLRLDRLVQELGIE--FIEQPFPAGRTDWLRALPK---- 232 (356)
T ss_dssp EEEECCSCHHHHHHHHHHHHHHHTTSSEEEEECTTCCCHHHHHHHHHHHHHTTCC--CEECCSCTTCHHHHHTSCH----
T ss_pred EEEEeCCCHHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCC--EEECCCCCCcHHHHHHHHh----
Confidence 9999999999999999999998 79999999999999999999999999999874 9999999999999999864
Q ss_pred cCCCeEEeCCCCCCHHHHHHHHHcC-CCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccC
Q 015289 284 KFGVSVAADESCRSLDDVKKIVKGN-LADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGL 361 (409)
Q Consensus 284 ~~~ipIa~dEs~~~~~~~~~~i~~~-a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~ 361 (409)
++++||++||+++++++++++++.+ ++|++|+|++++| ++++++++++|+++|+++++|||+||++++++++|+++++
T Consensus 233 ~~~iPIa~dE~~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~es~i~~aa~~hlaaa~ 312 (356)
T 3ro6_B 233 AIRRRIAADESLLGPADAFALAAPPAACGIFNIKLMKCGGLAPARRIATIAETAGIDLMWGCMDESRISIAAALHAALAC 312 (356)
T ss_dssp HHHHTEEESTTCCSHHHHHHHHSSSCSCSEEEECHHHHCSHHHHHHHHHHHHHHTCEEEECCCSCCHHHHHHHHHHHHTC
T ss_pred cCCCCEEeCCcCCCHHHHHHHHhcCCcCCEEEEcccccCCHHHHHHHHHHHHHcCCEEEecCCcccHHHHHHHHHHHhcC
Confidence 5789999999999999999999999 9999999999997 9999999999999999999999999999999999999999
Q ss_pred CCCceeccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCC
Q 015289 362 GCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWD 406 (409)
Q Consensus 362 ~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d 406 (409)
||+.++|+++++.+.+|++.+++.++||++.+|++||||+ +|+|
T Consensus 313 p~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv-~d~~ 356 (356)
T 3ro6_B 313 PATRYLDLDGSFDLARDVAEGGFILEDGRLRVTERPGLGL-VYPD 356 (356)
T ss_dssp TTEEEECCCTTTTBSCCSCEESCEEETTEEECCSSSBTCE-EC--
T ss_pred CCCCeEecccchhhhhccccCCceeECCEEECCCCCeeee-cCCC
Confidence 9999999999888888999888999999999999999999 9986
|
| >3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-75 Score=586.95 Aligned_cols=355 Identities=25% Similarity=0.356 Sum_probs=315.6
Q ss_pred eeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCC--ccCcccHHHHHHHHHH-HHHHHcCC
Q 015289 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP--HVTAEDQQTAMVKASE-ACEVLKES 121 (409)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~--~~~~e~~~~~~~~~~~-~~~~l~g~ 121 (409)
+|||++|+++++++|++.||++|.++.+.++.++|||+|++|++||||+.+.+ .|++|+.+.+...+++ +.|.++|+
T Consensus 4 ~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~i~td~G~~G~GE~~~~~~~~y~~e~~~~~~~~i~~~l~p~l~G~ 83 (381)
T 3fcp_A 4 TATVEQIESWIVDVPTIRPHKLSMTTMGCQSLVIVRLTRSDGICGIGEATTIGGLSYGVESPEAISSAITHYLTPLLKGQ 83 (381)
T ss_dssp CCBEEEEEEEEEEECBC-----------CEEEEEEEEEETTSCEEEEEEECSTTTTSSSCCHHHHHHHHHHTHHHHHTTS
T ss_pred CcEEEEEEEEEEeccccCCeEecccEEEeeeEEEEEEEECCCCEEEeccccCCCCccCCCCHHHHHHHHHHHHHHHhcCC
Confidence 49999999999999999999999999999999999999999999999998763 4677877766666665 78999999
Q ss_pred CCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHH-
Q 015289 122 PAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRK- 199 (409)
Q Consensus 122 ~~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~- 199 (409)
++.+++.+|+.+++.++|+ +.|++||||||||++||..|+|+|+||||. +++||+|++++..+++++.++++++++
T Consensus 84 d~~~~~~~~~~l~~~~~g~--~~A~said~ALwDl~gk~~g~Pv~~LLGg~~r~~v~~~~t~~~~~~~~~~~~~~~~~~~ 161 (381)
T 3fcp_A 84 PADNLNALTARMNGAIKGN--TFAKSAIETALLDAQGKALGLPVSALLGGALQTALPVLWTLASGDTAKDIAEGEKLLAE 161 (381)
T ss_dssp BSSCHHHHHHHHHHHCCSC--HHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEEEBCEEECSSCHHHHHHHHHHHTC-
T ss_pred CcCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCceeeEEEecCCChHHHHHHHHHHHHh
Confidence 9999999999998877765 468999999999999999999999999997 579999999888889988888888877
Q ss_pred cCCCeEEEecCC-ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHh
Q 015289 200 QGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 277 (409)
Q Consensus 200 ~Gf~~~KiKvG~-~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l 277 (409)
+||++||+|+|. ++++|++++++||++ ++++.|++|+|++|++++|+++++.|+++++ .|||||++++|++++++|
T Consensus 162 ~G~~~~KiKvg~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l 239 (381)
T 3fcp_A 162 GRHRAFKLKIGARELATDLRHTRAIVEALGDRASIRVDVNQAWDAATGAKGCRELAAMGV--DLIEQPVSAHDNAALVRL 239 (381)
T ss_dssp ---CEEEEECCSSCHHHHHHHHHHHHHHTCTTCEEEEECTTCBCHHHHHHHHHHHHHTTC--SEEECCBCTTCHHHHHHH
T ss_pred CCCCEEEEecCCCChHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHhhcCc--cceeCCCCcccHHHHHHH
Confidence 699999999995 579999999999998 7899999999999999999999999999987 499999999999999999
Q ss_pred HHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHH
Q 015289 278 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 356 (409)
Q Consensus 278 ~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~h 356 (409)
++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||++++++++|
T Consensus 240 ~~----~~~ipIa~dE~~~~~~~~~~~~~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~h 315 (381)
T 3fcp_A 240 SQ----QIETAILADEAVATAYDGYQLAQQGFTGAYALKIAKAGGPNSVLALARVAQAAGIGLYGGTMLEGTVGTVASLH 315 (381)
T ss_dssp HH----HSSSEEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSTTHHHHHHHHHHHHTCEEEECCSCCCHHHHHHHHH
T ss_pred HH----hCCCCEEECCCcCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCceecCCCCccHHHHHHHHH
Confidence 75 67899999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred HHccCCCCce-eccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 357 LSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 357 laaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
++++++ +.+ +|+++++.+.+|++.+++.++||++.+|++||||+++|++.|
T Consensus 316 laaa~~-~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 367 (381)
T 3fcp_A 316 AWSTLP-LQWGTEMFGPLLLKDDIVSVPLTFADGQVALPQTPGLGVELDEDKL 367 (381)
T ss_dssp HHTTSC-CTTCBCCCGGGGBSCCSBSSCCCEETTEEECCCSSBTSCCBCHHHH
T ss_pred HHHhCC-CccccccccchhhhhhccCCCceeeCCEEECCCCCCcCcccCHHHH
Confidence 999999 776 788888778889999899999999999999999999999876
|
| >3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-75 Score=586.98 Aligned_cols=358 Identities=22% Similarity=0.292 Sum_probs=319.0
Q ss_pred cceeeeEeEEEEEEEEecCccceeecccee-eeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHc
Q 015289 42 QTFTVDVQRAENRPLNVPLIAPFTIATSRL-DQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLK 119 (409)
Q Consensus 42 ~~~~mkI~~i~~~~~~~pl~~p~~~a~~~~-~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~ 119 (409)
....|||++|+++++++|++.||+++.++. +.++.++|||+|++|++||||+.+.+.++ |+.+.+...+++ +.|.++
T Consensus 4 ~~~~mkI~~i~~~~~~~Pl~~p~~~s~g~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~-e~~~~~~~~i~~~l~p~l~ 82 (385)
T 3i6e_A 4 GDLEQKIIAMDLWHLALPVVSARDHGIGRVEGSCEIVVLRLVAEGGAEGFGEASPWAVFT-GTPEASYAALDRYLRPLVI 82 (385)
T ss_dssp --CCSBEEEEEEEEEECCC--------------CEEEEEEEEETTSCEEEEEECCCTTTT-CCHHHHHHHHHHTTHHHHT
T ss_pred cchhcEEEEEEEEEEecccCCCeeccCcEEeceeeEEEEEEEECCCCEEEEeeccCCCcC-CCHHHHHHHHHHHHHHHHC
Confidence 345699999999999999999999999998 88899999999999999999999887766 676666666777 789999
Q ss_pred CCCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHH
Q 015289 120 ESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYR 198 (409)
Q Consensus 120 g~~~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~ 198 (409)
|+++.+++.+|+.+++.++++ ..|++|||+||||++||..|+|+|+||||. +++||+|++++..+++++.+++++++
T Consensus 83 G~d~~~~~~~~~~l~~~~~~~--~~A~said~ALwDl~gk~~g~Pl~~LLGg~~r~~v~~~~t~~~~~~~~~~~~a~~~~ 160 (385)
T 3i6e_A 83 GRRVGDRVAIMDEAARAVAHC--TEAKAALDSALLDLAGRISNLPVWALLGGKCRDTIPLSCSIANPDFDADIALMERLR 160 (385)
T ss_dssp TCBGGGHHHHHHHHHHHSSSC--HHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEEEBEEEECCSSHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHcCCcHHHHhCcccCCceEEEEEcCCCCHHHHHHHHHHHH
Confidence 999999999999998877665 468999999999999999999999999996 57999999998889999999999999
Q ss_pred HcCCCeEEEecCC-ChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHh
Q 015289 199 KQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 277 (409)
Q Consensus 199 ~~Gf~~~KiKvG~-~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l 277 (409)
++||++||+|+|. ++++|++++++||++.+++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|
T Consensus 161 ~~G~~~~K~Kvg~~~~~~d~~~v~avR~a~~~~~l~vDan~~~~~~~A~~~~~~L~~~~i--~~iEqP~~~~d~~~~~~l 238 (385)
T 3i6e_A 161 ADGVGLIKLKTGFRDHAFDIMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQFQP--DFIEQPVRAHHFELMARL 238 (385)
T ss_dssp HHTCCEEEEECSSSCHHHHHHHHHHHHHHCTTSEEEEECTTCCCGGGHHHHHHHHHTTCC--SCEECCSCTTCHHHHHHH
T ss_pred HcCCCEEEEecCCCCHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCC--CEEECCCCcccHHHHHHH
Confidence 9999999999995 6899999999999977999999999999999999999999999987 499999999999999998
Q ss_pred HHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHH
Q 015289 278 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 356 (409)
Q Consensus 278 ~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~h 356 (409)
++ ++++||++||++++.++++++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||+++.++++|
T Consensus 239 ~~----~~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~~es~i~~aa~~h 314 (385)
T 3i6e_A 239 RG----LTDVPLLADESVYGPEDMVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLMAYGGDMFEAGLAHLAGTH 314 (385)
T ss_dssp HT----TCSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCSCCHHHHHHHHH
T ss_pred HH----hCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCEEEeCCCCccHHHHHHHHH
Confidence 64 68999999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred HHccCCCCce-eccccc-cccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 357 LSAGLGCFKF-IDLDTP-LLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 357 laaa~~~~~~-~e~~~p-~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
++++++|+.+ +|++.+ ..+.+|++.+++.++||++.+|++||||+++|++.|
T Consensus 315 laaa~~~~~~~~e~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 368 (385)
T 3i6e_A 315 MIAATPEITLGCEFYQASYFLNEDILETPFRVEAGQVIVPDGPGLGARADPEKL 368 (385)
T ss_dssp HHHTCTTEEEEECCCHHHHTCSSCSBSSCCCEETTEEECCCSSBTSSCBCHHHH
T ss_pred HHHhCCCCccchhhcCchhhhhhhcccCCceeECCEEECCCCCCCCceECHHHH
Confidence 9999999888 888876 566789998889999999999999999999999875
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-75 Score=581.07 Aligned_cols=354 Identities=21% Similarity=0.341 Sum_probs=318.7
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHH-HHHHHHcCCCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS-EACEVLKESPAM 124 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~-~~~~~l~g~~~~ 124 (409)
|||++|+++++++|++.||+++.++++.++.++|||+|++|++||||+.+.|++++|+.+.+...++ .+.|.++|+++.
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~i~~~l~~~l~G~d~~ 80 (367)
T 3dg3_A 1 MKIVAIGAIPFSIPYTKPLRFASGEVHAAEHVLVRVHTDDGIVGVAEAPPRPFTYGETQTGIVAVIEQYFAPALIGLTLT 80 (367)
T ss_dssp CBEEEEEEEEEEECBC-----------CEEEEEEEEEETTSCEEEEEECCCTTTTCCCHHHHHHHHHHTHHHHHTTCBTT
T ss_pred CEEEEEEEEEEEeeccCCeeccCeEEeeeeEEEEEEEECCCCEEEEeccCCCCccCCCHHHHHHHHHHHHHHHHcCCCcC
Confidence 8999999999999999999999999999999999999999999999999888888888777666676 588999999999
Q ss_pred CHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHc-CCC
Q 015289 125 ALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQ-GFT 203 (409)
Q Consensus 125 ~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~-Gf~ 203 (409)
+++.+|+.+++. .++ ..|++||||||||++||..|+|||+||||.+++||+|++++..+++++.+++++++++ ||+
T Consensus 81 ~~~~~~~~l~~~-~~~--~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~G~~ 157 (367)
T 3dg3_A 81 EREVAHTRMART-VGN--PTAKAAIDMAMWDALGQSLRLSVSEMLGGYTDRMRVSHMLGFDDPVKMVAEAERIRETYGIN 157 (367)
T ss_dssp CHHHHHHHHTTS-CSC--HHHHHHHHHHHHHHHHHHHTCBHHHHHTCCCSEEEEEEEEESSCHHHHHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHhc-cCc--hHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCeEEEEEEecCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999765 343 4689999999999999999999999999987899999999999999999999999999 999
Q ss_pred eEEEecCCChh-HHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHh
Q 015289 204 TLKLKVGKNLK-EDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA 281 (409)
Q Consensus 204 ~~KiKvG~~~~-~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~ 281 (409)
++|+|+|.++. +|++++++||++ ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|++
T Consensus 158 ~~K~K~g~~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~~-- 233 (367)
T 3dg3_A 158 TFKVKVGRRPVQLDTAVVRALRERFGDAIELYVDGNRGWSAAESLRAMREMADLDL--LFAEELCPADDVLSRRRLVG-- 233 (367)
T ss_dssp EEEEECCCSSTHHHHHHHHHHHHHHGGGSEEEEECTTCSCHHHHHHHHHHTTTSCC--SCEESCSCTTSHHHHHHHHH--
T ss_pred EEEEeeCCChhhhHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCC--CEEECCCCcccHHHHHHHHH--
Confidence 99999998777 999999999997 7999999999999999999999999999987 49999999999999999875
Q ss_pred hccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccC
Q 015289 282 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGL 361 (409)
Q Consensus 282 ~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~ 361 (409)
++++||++||++++.++++++++.+++|++|+|++++|++++++++++|+++|+++++|||++|+++.++++||++++
T Consensus 234 --~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~Git~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~hlaaa~ 311 (367)
T 3dg3_A 234 --QLDMPFIADESVPTPADVTREVLGGSATAISIKTARTGFTGSTRVHHLAEGLGLDMVMGNQIDGQIGTACTVSFGTAF 311 (367)
T ss_dssp --HCSSCEEECTTCSSHHHHHHHHHHTSCSEEEECHHHHTTHHHHHHHHHHHHHTCEEEECCSSCCHHHHHHHHHHHTTC
T ss_pred --hCCCCEEecCCcCCHHHHHHHHHcCCCCEEEeehhhhhHHHHHHHHHHHHHcCCeEEECCcCCcHHHHHHHHHHHHhC
Confidence 678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-Cc-eeccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 362 GC-FK-FIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 362 ~~-~~-~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
+| +. ..++++++.+.+|++.++++++||++.+|++||||+++|++.|
T Consensus 312 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 360 (367)
T 3dg3_A 312 ERTSRHAGELSNFLDMSDDLLTVPLQISDGQLHRRPGPGLGIEIDPDKL 360 (367)
T ss_dssp HHHHTSCEECCGGGGBSCCSBSSCCCCBTTEEECCSSSBTSCCBCHHHH
T ss_pred CcccCcchhccchhhhhhcccCCCceeeCCEEECCCCCcCCceECHHHH
Confidence 83 23 3578888778899999999999999999999999999999875
|
| >3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-75 Score=584.23 Aligned_cols=355 Identities=22% Similarity=0.331 Sum_probs=317.3
Q ss_pred eeeEeEEEEEEEEecCccceeeccceeeeee-EEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHcCCC
Q 015289 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVE-NVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESP 122 (409)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~-~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (409)
.|||++|+++++++|++.||+++.++.+.++ .++|||+|++|++||||+.+.+.++ |+.+.+...+++ +.|.++|++
T Consensus 5 ~~kI~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~-e~~~~~~~~i~~~l~p~liG~d 83 (377)
T 3my9_A 5 DSVVERIRIFLVESPIKMARLQGVGNVKGSVKRVLLEVTSADGIVGWGEAAPWEVFT-GTPEAAFSALDIYLRPLILGAP 83 (377)
T ss_dssp CCBEEEEEEEEEEECEEC----------CCEEEEEEEEEETTSCEEEEEECCC------CHHHHHHHHHTTTHHHHTTCB
T ss_pred cCEEEEEEEEEEeccccCCeeccceEEEeeeeEEEEEEEECCCCEEEEecccCCCcC-CCHHHHHHHHHHHHHHHhCCCC
Confidence 4999999999999999999999999988888 9999999999999999999877665 666666666666 789999999
Q ss_pred CCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHHcC
Q 015289 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQG 201 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~G 201 (409)
+.+++.+|+.+++.++++ ..|++||||||||++||..|+|+|+||||. +++||+|++++..+++++.+++++++++|
T Consensus 84 ~~~~~~~~~~l~~~~~~~--~~A~said~AlwDl~gk~~g~Pl~~LLGg~~r~~v~~~~t~~~~~~~~~~~~a~~~~~~G 161 (377)
T 3my9_A 84 IKRVRELMARMDKMLVGH--GEAKAAVEMALLDILGKATGLSVADLLGGRVRDRIPLSFSIADPDFDADLERMRAMVPAG 161 (377)
T ss_dssp TTCHHHHHHHHHHHSCSC--HHHHHHHHHHHHHHHHHHHTCBTTGGGTCCSCSEEEBCEEECCSSHHHHHHHHHHHTTTT
T ss_pred cCCHHHHHHHHHHHhcCc--hhHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeEEEEEecCCCCHHHHHHHHHHHHHcC
Confidence 999999999998877665 468999999999999999999999999996 57999999998889999999999999999
Q ss_pred CCeEEEecCC-ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHH
Q 015289 202 FTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 279 (409)
Q Consensus 202 f~~~KiKvG~-~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~ 279 (409)
|+++|+|+|. ++++|++++++||++ ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|++
T Consensus 162 ~~~~K~Kvg~~~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~~ 239 (377)
T 3my9_A 162 HTVFKMKTGVKPHAEELRILETMRGEFGERIDLRLDFNQALTPFGAMKILRDVDAFRP--TFIEQPVPRRHLDAMAGFAA 239 (377)
T ss_dssp CCEEEEECSSSCHHHHHHHHHHHHHHHGGGSEEEEECTTCCCTTTHHHHHHHHHTTCC--SCEECCSCTTCHHHHHHHHH
T ss_pred CCEEEEccCCCcHHHHHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCC--CEEECCCCccCHHHHHHHHH
Confidence 9999999995 689999999999998 7999999999999999999999999999987 49999999999999999875
Q ss_pred HhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHH
Q 015289 280 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLS 358 (409)
Q Consensus 280 ~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hla 358 (409)
++++||++||+++++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||++++++++|++
T Consensus 240 ----~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~es~i~~aa~~hla 315 (377)
T 3my9_A 240 ----ALDTPILADESCFDAVDLMEVVRRQAADAISVKIMKCGGLMKAQSLMAIADTAGLPGYGGTLWEGGIALAAGTQLI 315 (377)
T ss_dssp ----HCSSCEEESTTCSSHHHHHHHHHHTCCSEEECCHHHHTSHHHHHHHHHHHHHHTCCEECCEECCSHHHHHHHHHHH
T ss_pred ----hCCCCEEECCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCeEecCCCCCcHHHHHHHHHHH
Confidence 67899999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred ccCCCCce-eccccc-cccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 359 AGLGCFKF-IDLDTP-LLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 359 aa~~~~~~-~e~~~p-~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
++++|+.+ +|++++ ..+.+|++.++++++||++.+|++||||+++|++.|
T Consensus 316 aa~~~~~~~~e~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 367 (377)
T 3my9_A 316 AATPGISLGCEFYMPHHVLTEDVLEERIANSAGHVIVPDGPGLGISISEASL 367 (377)
T ss_dssp HTCTTBCSCBEESCTTSEECCCSSSSCCCEETTEEECCCSSBTSCCCCHHHH
T ss_pred HhCCCCccceeecCchhhhhhhccCCCceeECCEEECCCCCCCCcccCHHHH
Confidence 99999888 888887 566789998889999999999999999999999875
|
| >3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-74 Score=579.75 Aligned_cols=355 Identities=19% Similarity=0.303 Sum_probs=325.1
Q ss_pred eeeeEeEEEEEEEEecCccc-eeeccc-eeeeeeEEEEEEEECCCceEEEEeccC-CccCcccHHHHHHHHHHHHHHHcC
Q 015289 44 FTVDVQRAENRPLNVPLIAP-FTIATS-RLDQVENVAIRIELSNGCVGWGEAPVL-PHVTAEDQQTAMVKASEACEVLKE 120 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p-~~~a~~-~~~~~~~~iVrl~td~G~~G~GE~~~~-~~~~~e~~~~~~~~~~~~~~~l~g 120 (409)
|+|||++|+++++++|++.| |+++.+ +.+.++.++|||+|++|++||||+.+. +.|++|+.+.+...++.+.|.|+|
T Consensus 1 m~MkI~~i~~~~~~~pl~~p~~~~s~g~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~e~~~~~~~~l~~l~~~l~G 80 (386)
T 3fv9_G 1 MSLKITRIDIHRTDLPVRGGVYRLSGGREYHSYDATIVSIETDTGLTGWGESTPFGSTYIAAHAGGTRAALELLAPAILG 80 (386)
T ss_dssp --CCEEEEEEEEEEEEBSSSCEEETTTEEESEEEEEEEEEEETTSCEEEEEECCSTTSSSSCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEEEEEEEeecCCCceEecCceEEeeeeEEEEEEEECCCCEEEEecccCCCccCcccHHHHHHHHHHHHHHhCC
Confidence 68999999999999999999 999955 788899999999999999999999876 567777777666667778999999
Q ss_pred CCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHH
Q 015289 121 SPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRK 199 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~ 199 (409)
+++.+++.+|+.+++.++|+ ..|++||||||||++||..|+|||+||||. +++||+|.+++..+++++.++++++++
T Consensus 81 ~d~~~~~~~~~~l~~~~~g~--~~A~said~ALwDl~gk~~g~Pv~~LLGg~~~~~v~~y~s~~~~~~e~~~~~a~~~~~ 158 (386)
T 3fv9_G 81 MDPRQHDRIWDRMRDTLKGH--RDARAALDIACWDIAAQAAGLPLCDMTGGRVAGPVPVISSIGGDTPEAMRAKVARHRA 158 (386)
T ss_dssp SCTTCHHHHHHHHHHHCSSC--HHHHHHHHHHHHHHHHHHHTCBHHHHTTCCCSSCBCEEEEECSCCHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCCceeeeEecCCCCHHHHHHHHHHHHH
Confidence 99999999999998877765 468999999999999999999999999996 568999999999999999999999999
Q ss_pred cCCCeEEEecC-----CChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHH-HhCCCCCceeecCCCCCCHH
Q 015289 200 QGFTTLKLKVG-----KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKL-YEMGVTPVLFEQPVHRDDWE 272 (409)
Q Consensus 200 ~Gf~~~KiKvG-----~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L-~~~~l~~~~iEeP~~~~d~~ 272 (409)
+||++||+|+| .++++|++++++||++ ++++.|++|+|++|++++|+++++.| ++++ + |||||++ |++
T Consensus 159 ~G~~~~K~Kvg~~~~~~~~~~d~~~v~avR~a~G~~~~L~vDaN~~~~~~~A~~~~~~l~~~~~--i-~iEeP~~--~~~ 233 (386)
T 3fv9_G 159 QGFKGHSIKIGASEAEGGPALDAERITACLADRQPGEWYLADANNGLTVEHALRMLSLLPPGLD--I-VLEAPCA--SWA 233 (386)
T ss_dssp TTCCEEEEECCCCTTTTHHHHHHHHHHHHTTTCCTTCEEEEECTTCCCHHHHHHHHHHSCSSCC--C-EEECCCS--SHH
T ss_pred CCCCEEEEeccCCCCCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHhhccCC--c-EEecCCC--CHH
Confidence 99999999999 5689999999999998 79999999999999999999999999 7775 4 9999998 799
Q ss_pred HHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHH
Q 015289 273 GLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAM 351 (409)
Q Consensus 273 ~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~ 351 (409)
++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||++++
T Consensus 234 ~~~~l~~----~~~iPIa~dE~~~~~~~~~~~~~~~a~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~~es~i~~ 309 (386)
T 3fv9_G 234 ETKSLRA----RCALPLLLDELIQTETDLIAAIRDDLCDGVGLKVSKQGGITPMLRQRAIAAAAGMVMSVQDTVGSQISF 309 (386)
T ss_dssp HHHHHHT----TCCSCEEESTTCCSHHHHHHHHHTTCCSEEEEEHHHHTSHHHHHHHHHHHHHTTCEEEEECSSCCHHHH
T ss_pred HHHHHHh----hCCCCEEeCCCcCCHHHHHHHHHhCCCCEEEECccccCCHHHHHHHHHHHHHcCCEEEeCCCCCCHHHH
Confidence 9998864 68999999999999999999999999999999999997 999999999999999999999999999999
Q ss_pred HHHHHHHccCCCCce-eccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCcC
Q 015289 352 GFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409 (409)
Q Consensus 352 ~~~~hlaaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~~ 409 (409)
++++||+++++|+.+ .+++++..+.+|++.++++++||++.+|++||||+++|++.|+
T Consensus 310 aa~~hlaaa~~~~~~~~~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l~ 368 (386)
T 3fv9_G 310 AAILHLAQSTPRHLLRCALDTRAMTTAELAEIDAPLRDGGASAPSDPGLGLRVNRDALG 368 (386)
T ss_dssp HHHHHHHHTSCTTTEEEEECGGGTBCCCCEECCCCSBTTBBCCCCSSBTCCEECGGGGC
T ss_pred HHHHHHHHhCCCcccccccccccchhccccCCCceEECCEEECCCCCCCCceeCHHHHh
Confidence 999999999999543 5677776677788888889999999999999999999999874
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-74 Score=576.13 Aligned_cols=355 Identities=20% Similarity=0.346 Sum_probs=323.2
Q ss_pred eeeeEeEEEEEEEEecCccceeeccc--eeeeeeEEEEEEEECCCceEEEEeccC-CccCcccHHHHHHHHHHHHHHHcC
Q 015289 44 FTVDVQRAENRPLNVPLIAPFTIATS--RLDQVENVAIRIELSNGCVGWGEAPVL-PHVTAEDQQTAMVKASEACEVLKE 120 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p~~~a~~--~~~~~~~~iVrl~td~G~~G~GE~~~~-~~~~~e~~~~~~~~~~~~~~~l~g 120 (409)
|+|||++|+++++++|++.||+++.+ +.+.++.++|||+|++|++||||+.+. +.|+.|+...+...++.+.|.|+|
T Consensus 1 m~MkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~l~~l~p~l~G 80 (378)
T 3eez_A 1 MSLKITRITVYQVDLPLEHPYWLSGGRLKFELLDATLVKLETDAGITGWGEGTPWGHTYVPAHGPGIRAGIETMAPFVLG 80 (378)
T ss_dssp --CCEEEEEEEEEEEEBSSCCC------CCCEEEEEEEEEEETTCCCEEEEECCSCSSSSSCCHHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEEEEEEEeccCCCceeecCCcceeeeeeEEEEEEEECCCCEEEecccCCCCccCCCcHHHHHHHHHHHHHHhcC
Confidence 57999999999999999999999987 678899999999999999999999876 667777766666666778999999
Q ss_pred CCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHH
Q 015289 121 SPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRK 199 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~ 199 (409)
+++.+++.+|+.+++.++|+ ..|++|||+||||++||..|+|||+||||. ++++|+|.+++..+++++.+.++++++
T Consensus 81 ~d~~~~~~~~~~l~~~~~g~--~~A~said~ALwDl~gk~~g~Pl~~LlGg~~r~~v~~~~~~~~~~~e~~~~~a~~~~~ 158 (378)
T 3eez_A 81 LDPRRLLDVERAMDIALPGH--LYAKSPIDMACWDIAGQAAGLPIADLMGGGSRTPRPIASSVGAKSVEETRAVIDRYRQ 158 (378)
T ss_dssp SCTTCHHHHHHHHHHHSSSC--HHHHHHHHHHHHHHHHHHTTSBHHHHTTCCCCSCEEBBCCBCSCCHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCCeEEEEEEecCCCHHHHHHHHHHHHh
Confidence 99999999999998877765 468999999999999999999999999997 478999999999999999999999999
Q ss_pred cCCCeEEEecCCChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhH
Q 015289 200 QGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 278 (409)
Q Consensus 200 ~Gf~~~KiKvG~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~ 278 (409)
+||++||+|+|.++++|++++++||++ ++++.|++|+|++|+.++|+++++.|++++ + |||||++ |++++++|+
T Consensus 159 ~G~~~iKiK~G~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~--i-~iEqP~~--~~~~~~~l~ 233 (378)
T 3eez_A 159 RGYVAHSVKIGGDVERDIARIRDVEDIREPGEIVLYDVNRGWTRQQALRVMRATEDLH--V-MFEQPGE--TLDDIAAIR 233 (378)
T ss_dssp TTCCEEEEECCSCHHHHHHHHHHHTTSCCTTCEEEEECTTCCCHHHHHHHHHHTGGGT--C-CEECCSS--SHHHHHHTG
T ss_pred CCCCEEEeccCCCHHHHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHhccCC--e-EEecCCC--CHHHHHHHH
Confidence 999999999999999999999999998 699999999999999999999999999997 4 9999998 899999886
Q ss_pred HHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHH
Q 015289 279 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHL 357 (409)
Q Consensus 279 ~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hl 357 (409)
+ ++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||++++++++||
T Consensus 234 ~----~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~ik~~~~GGit~~~~ia~~A~~~g~~~~~~~~~es~i~~aa~~hl 309 (378)
T 3eez_A 234 P----LHSAPVSVDECLVTLQDAARVARDGLAEVFGIKLNRVGGLTRAARMRDIALTHGIDMFVMATGGSVLADAEALHL 309 (378)
T ss_dssp G----GCCCCEEECTTCCSHHHHHHHHHTTCCSEEEEEHHHHTSHHHHHHHHHHHHHTTCEEEEECSSCSHHHHHHHHHH
T ss_pred h----hCCCCEEECCCCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHcCCEEEcCCCCCCHHHHHHHHHH
Confidence 4 68999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred HccCCCC-ceeccccccccccCCCCC-CeeeeCcEEecCCCCCcccccCCCCcC
Q 015289 358 SAGLGCF-KFIDLDTPLLLSEDPVLD-GYEVSGAVYKFTNARGHGGFLHWDNIA 409 (409)
Q Consensus 358 aaa~~~~-~~~e~~~p~~~~~d~~~~-~~~~~~G~i~~p~~PGlG~~~d~d~~~ 409 (409)
+++++|. .+.+++++..+.+|++.+ ++.++||++.+|++||||+++|++.|+
T Consensus 310 aaa~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l~ 363 (378)
T 3eez_A 310 AATIPDHACHAVWACQDMLTVDIAGGRGPRNIDGHLHLPETPGLGVHPDEDALG 363 (378)
T ss_dssp HHTSCGGGBCCBCCSGGGBSCCTTTTCSSCCBTTEECCCCSSBTSCCCCTTSSC
T ss_pred HHhCCCccceeeccccchhhhhcccCCCCeeECCEEECCCCCCCCcccCHHHHh
Confidence 9999984 346778877777888877 789999999999999999999999875
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-74 Score=572.34 Aligned_cols=345 Identities=32% Similarity=0.466 Sum_probs=326.0
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHH---HHHcCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEAC---EVLKESP 122 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~---~~l~g~~ 122 (409)
|||++|+++++++|++.||+++.++.+.++.++|||+|++|++||||+.+.+.+++|+.+.+...++.+. |.|+|++
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~ge~~~~~~~~i~~l~~~~p~l~G~d 80 (354)
T 3jva_A 1 MKIKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLVGYGEGGPGIFITGETLAGTLETIELFGQAIIGLNPFN 80 (354)
T ss_dssp CCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCCTTTTCCCHHHHHHHHHHHHTTSTTCCTTC
T ss_pred CEEEEEEEEEEEEeccCCEEecCcEEeeceEEEEEEEECCCCEEEEeecCCCCcCCCCHHHHHHHHHHHhhcCccccCCC
Confidence 8999999999999999999999999999999999999999999999999888788888776666666677 9999999
Q ss_pred CCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHcCC
Q 015289 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGF 202 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf 202 (409)
+.+++.+|+.++ .++ .+|++||||||||++||.+|+|||+||||.+++|++|++++..+++++.+++++++++||
T Consensus 81 ~~~~~~~~~~l~---~~~--~~A~~aid~AlwDl~gk~~g~Pl~~llGg~~~~v~~~~~~~~~~~~~~~~~a~~~~~~G~ 155 (354)
T 3jva_A 81 IEKIHEVMDKIS---AFA--PAAKAAIDIACYDLMGQKAQLPLYQLLGGYDNQVITDITLGIDEPNVMAQKAVEKVKLGF 155 (354)
T ss_dssp HHHHHHHHHHHC---SSC--HHHHHHHHHHHHHHHHHHHTSBHHHHTTCSCSEEECCEEECSCCHHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHh---ccc--HHHHHHHHHHHHHHHHHHcCCcHHHHhhccCCeeeeeEEeCCCCHHHHHHHHHHHHHhCC
Confidence 999999999886 333 468999999999999999999999999998889999999999999999999999999999
Q ss_pred CeEEEecCCChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHh
Q 015289 203 TTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA 281 (409)
Q Consensus 203 ~~~KiKvG~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~ 281 (409)
+++|+|+|.+.++|++++++||++ ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|++
T Consensus 156 ~~~K~K~g~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~L~~~~i--~~iEqP~~~~d~~~~~~l~~-- 231 (354)
T 3jva_A 156 DTLKIKVGTGIEADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQI--ELVEQPVKRRDLEGLKYVTS-- 231 (354)
T ss_dssp SEEEEECCSCHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHTTTSCE--EEEECCSCTTCHHHHHHHHH--
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCC--CEEECCCChhhHHHHHHHHH--
Confidence 999999998889999999999997 8999999999999999999999999999986 59999999999999999875
Q ss_pred hccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHHc
Q 015289 282 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSA 359 (409)
Q Consensus 282 ~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~-es~i~~~~~~hlaa 359 (409)
++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|||+ ||++++++++||++
T Consensus 232 --~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~~~es~i~~~a~~hlaa 309 (354)
T 3jva_A 232 --QVNTTIMADESCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMIGCMAEETTIGITAAAHLAA 309 (354)
T ss_dssp --HCSSEEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCTTCCHHHHHHHHHHHH
T ss_pred --hCCCCEEEcCCcCCHHHHHHHHHcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCeEEecCCCcccHHHHHHHHHHHh
Confidence 67899999999999999999999999999999999997 999999999999999999999999 99999999999999
Q ss_pred cCCCCceeccccccccccCCCCCCeeeeCcEEecCCC-CCccc
Q 015289 360 GLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNA-RGHGG 401 (409)
Q Consensus 360 a~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~-PGlG~ 401 (409)
++||+.++|+++++.+.+|++.++++++||++.+|++ ||||+
T Consensus 310 a~~~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~~PGlGv 352 (354)
T 3jva_A 310 AQKNITRADLDATFGLETAPVTGGVSLEAKPLLELGEAAGLGI 352 (354)
T ss_dssp HCTTEEEECCCGGGGBSSCSSSBSSCSSCCSEEECCSSSBTCB
T ss_pred cCCCCCcccccchhhhhhccccCCceEECCEEEcCCCCCCCCC
Confidence 9999999999999888899999899999999999999 99998
|
| >2chr_A Chloromuconate cycloisomerase; 3.00A {Cupriavidus necator} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-74 Score=575.80 Aligned_cols=355 Identities=25% Similarity=0.371 Sum_probs=323.7
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccC--CccCcccHHHHHHHHHH-HHHHHcCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKESP 122 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (409)
|||++|+++.+++||++||++|.++.+.++.++|||+| ||++||||+.+. |.+++|+.+.+...+++ +.|.|+|++
T Consensus 1 MKI~~i~~~~~~~Pl~~p~~~s~~~~~~~~~v~V~i~t-dG~~G~GE~~~~~~p~~~~e~~~~~~~~i~~~l~p~liG~d 79 (370)
T 2chr_A 1 MKIDAIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVYS-EGLVGVGEGGSVGGPVWSAECAETIKIIVERYLAPHLLGTD 79 (370)
T ss_dssp CCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEB-TTBCCEEECCCSTTTTTSSCCHHHHHHHHHHHTHHHHTTSC
T ss_pred CEEEEEEEEEEEcccCCceEccceEEEEEEEEEEEEEE-CCcEEEEEecCCCCCccCcccHHHHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999999999999999999997 599999999875 56788887776666655 689999999
Q ss_pred CCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCC-CeeeeeeeecCCC-HHHHHHHHHHHHHc
Q 015289 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVS-NTITTDITIPIVS-PAEAAELASKYRKQ 200 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~-~~i~~~~~i~~~~-~~~~~~~~~~~~~~ 200 (409)
+.+++.+|+.+++...++ +.|++||||||||+.||..|+|||+||||.. +.+++|.++...+ ++++.+.++.+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~--~~A~said~AlwDl~gK~~g~Pl~~lLGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (370)
T 2chr_A 80 AFNVSGALQTMARAVTGN--ASAKAAVEMALLDLKARALGVSIAELLGGPLRSAIPIAWTLASGDTKRDLDSAVEMIERR 157 (370)
T ss_dssp TTCHHHHHHHHHTTCSSC--HHHHHHHHHHHHHHHHHHTTCCHHHHTTCCSCSEEEBEEEECSSCHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHhhccccc--HHHHHHHHHHHHHHHHHhcCCccccccCCccccccceeeeeccCchhhhHHHHHHHHhhc
Confidence 999999999998877665 4589999999999999999999999999975 5778887776654 45566777788889
Q ss_pred CCCeEEEecC-CChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhH
Q 015289 201 GFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 278 (409)
Q Consensus 201 Gf~~~KiKvG-~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~ 278 (409)
||+++|+|+| .++++|+++++++|+. ++++.||+|+|++|++++|+++++.|+++++. |||||++++|++++++|+
T Consensus 158 g~~~~K~Kvg~~~~~~d~~~v~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~--~iEeP~~~~d~~~~~~l~ 235 (370)
T 2chr_A 158 RHNRFKVKLGFRSPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGVE--LIEQPVGRENTQALRRLS 235 (370)
T ss_dssp SCCEEEEECSSSCHHHHHHHHHHHHHHTTTTSEEEEECTTCCCTHHHHHHHHHHHTTTCC--EEECCSCSSCHHHHHHHH
T ss_pred ccceeecccccCChHHHHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHHHhcCCc--eecCCCChhhhhhhhHHh
Confidence 9999999999 5889999999999997 89999999999999999999999999999874 999999999999999997
Q ss_pred HHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHH
Q 015289 279 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHL 357 (409)
Q Consensus 279 ~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hl 357 (409)
+ ++++|||+||++++.++++++++.+++|++|+|++++| ++++++++++|+++|+++++||++++++++++++|+
T Consensus 236 ~----~~~ipIa~dE~~~~~~~~~~~~~~~a~d~i~~d~~~~GGit~~~~ia~~A~~~gi~~~~~~~~~~~i~~aa~~hl 311 (370)
T 2chr_A 236 D----NNRVAIMADESLSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASGIASYGGTMLDSTIGTSVALQL 311 (370)
T ss_dssp H----HCSSEEEESSSCCSHHHHHHHHTTTCCSEECCCHHHHTSHHHHHHHHHHHHHHTCEECCCCCSCCHHHHHHHHHH
T ss_pred h----hccCCccCCccCCCHHHHHHHHHcCCCcEEEeCCcccCCHHHHHHHHHHHHHcCCeEEeCCCcccHHHHHHHHHH
Confidence 5 68899999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred HccCCCCce-eccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCcC
Q 015289 358 SAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409 (409)
Q Consensus 358 aaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~~ 409 (409)
++++||+.+ .++++++.+.++++.++++++||++.+|++||||+++|+|.|+
T Consensus 312 aa~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l~ 364 (370)
T 2chr_A 312 YSTVPSLPFGCELIGPFVLADTLSHEPLEIRDYELQVPTGVGHGMTLDEDKVR 364 (370)
T ss_dssp HTTSSCCTTCBCCCHHHHBSCCSBSCCCCBCSSEEECCCSSSTTCCBCHHHHH
T ss_pred HHhCCCCCcccccCchhhhhhhccCCCceEECCEEECCCCCCCCceECHHHHH
Confidence 999999877 4577777788888888999999999999999999999998763
|
| >4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain protein; putative racemase, nysgrc, structural genomics, PSI-biology; 2.00A {Paracoccus denitrificans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-73 Score=571.45 Aligned_cols=355 Identities=19% Similarity=0.286 Sum_probs=307.0
Q ss_pred eeeeEeEEEEEEEEecC-ccceeeccceeeeeeEEEEEEEECCCceEEEEeccC-CccCcccHHHHHHHHHHHHHHHcCC
Q 015289 44 FTVDVQRAENRPLNVPL-IAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL-PHVTAEDQQTAMVKASEACEVLKES 121 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl-~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~-~~~~~e~~~~~~~~~~~~~~~l~g~ 121 (409)
.+|||++|+++++++|+ +.||.+|.++.+.++.++|||+||+|++||||+.+. |.|+.|+...+...++++.|.|+|+
T Consensus 21 ~~MkI~~i~~~~~~~pl~~~p~~~s~g~~~~~~~~~V~i~td~G~~G~GE~~~~~~~~~~~~~~~~~~~l~~l~p~l~G~ 100 (391)
T 4e8g_A 21 QSMKIAEIHVYAHDLPVKDGPYTIASSTVWSLQTTLVKIVADSGLAGWGETCPVGPTYAPSHALGARAALAEMAPGLIGA 100 (391)
T ss_dssp --CCEEEEEEEEEEC---------------CCEEEEEEEEETTSCEEEEEECCSSTTTSSCCHHHHHHHHHHHGGGGTTC
T ss_pred cCCEEEEEEEEEEeeeCCCCCcccccceeeeeeEEEEEEEECCCCEEEecCcCCCCccCCccHHHHHHHHHHHHHHHCCC
Confidence 34999999999999999 999999999999999999999999999999999876 6677776666666667789999999
Q ss_pred CCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHHc
Q 015289 122 PAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQ 200 (409)
Q Consensus 122 ~~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~ 200 (409)
++.+++.+|+.+++.++|+ ..|++||||||||++||..|+|||+||||. +++||+|.+++..+++++.+++++++++
T Consensus 101 d~~~~~~~~~~l~~~~~g~--~~A~said~ALwDl~gK~~g~Pl~~LLGg~~r~~v~~y~s~~~~~~e~~~~~a~~~~~~ 178 (391)
T 4e8g_A 101 NPLQPLVLRRRMDGLLCGH--NYAKAAIDIAAYDLMGKHYGVRVADLLGGVAAERVPSYYATGIGQPDEIARIAAEKVAE 178 (391)
T ss_dssp CTTCHHHHHHHHHTTCSSC--HHHHHHHHHHHHHHHHHHHTCBGGGGTTCCSCSEEECCEEECSCCHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHcCChHHHhcCCCCCCcEEEeEEcCCCCHHHHHHHHHHHHHc
Confidence 9999999999998776665 468999999999999999999999999997 4689999999999999999999999999
Q ss_pred CCCeEEEecCC-ChhHHHHHHHHHHhh-C-CCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHh
Q 015289 201 GFTTLKLKVGK-NLKEDIEVLRAIRAV-H-PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 277 (409)
Q Consensus 201 Gf~~~KiKvG~-~~~~d~~~l~avr~~-~-~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l 277 (409)
||++||+|+|. ++++|++++++||++ + +++.|++|+|++|++++|++++++|++++ + |||||+ +|++++++|
T Consensus 179 G~~~~KlKvg~~~~~~d~~~v~avR~a~gg~~~~L~vDaN~~w~~~~A~~~~~~L~~~~--i-~iEeP~--~~~~~~~~l 253 (391)
T 4e8g_A 179 GFPRLQIKIGGRPVEIDIETVRKVWERIRGTGTRLAVDGNRSLPSRDALRLSRECPEIP--F-VLEQPC--NTLEEIAAI 253 (391)
T ss_dssp TCSEEEEECCSSCHHHHHHHHHHHHHHHTTTTCEEEEECTTCCCHHHHHHHHHHCTTSC--E-EEESCS--SSHHHHHHH
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCCHHHHHHHHHHHhhcC--e-EEecCC--ccHHHHHHH
Confidence 99999999996 899999999999997 7 99999999999999999999999999986 4 999996 489999998
Q ss_pred HHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHH
Q 015289 278 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 356 (409)
Q Consensus 278 ~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~h 356 (409)
++ ++++|||+||++++.++++++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||++++++++|
T Consensus 254 ~~----~~~iPIa~dE~~~~~~~~~~~~~~~a~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~h 329 (391)
T 4e8g_A 254 RG----RVQHGIYLDESGEDLSTVIRAAGQGLCDGFGMKLTRIGGLQQMAAFRDICEARALPHSCDDAWGGDIIAAACTH 329 (391)
T ss_dssp GG----GCCSCEEESTTCCSHHHHHHHHHTTCCSEEEEEHHHHTSHHHHHHHHHHHHHTTCCEEEECSSCSHHHHHHHHH
T ss_pred Hh----hCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEeCCcCCCHHHHHHHHH
Confidence 64 68999999999999999999999999999999999997 99999999999999999999999999999999999
Q ss_pred HHccCCCCceecc-ccccccccCCCCCC-eeeeCcEEecCCCCCcccccCCCCcC
Q 015289 357 LSAGLGCFKFIDL-DTPLLLSEDPVLDG-YEVSGAVYKFTNARGHGGFLHWDNIA 409 (409)
Q Consensus 357 laaa~~~~~~~e~-~~p~~~~~d~~~~~-~~~~~G~i~~p~~PGlG~~~d~d~~~ 409 (409)
|++++||+.+.+. +....+.+|+...+ +.++||++.+|++||||+++|++.|+
T Consensus 330 laaa~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~i~vp~~PGLGve~d~~~l~ 384 (391)
T 4e8g_A 330 IGATVQPRLNEGVWVAQPYIAQPYDEENGIRIAGGHIDLPKGPGLGITPDESLFG 384 (391)
T ss_dssp HHTTSCGGGEEECCCSGGGCSSCSCTTTCCCEETTEEECCCSSBTSCCCCGGGTC
T ss_pred HHHhCCCccccccccchhhhhhhccccCCceEECCEEECCCCCcCCCccCHHHHh
Confidence 9999999776543 22222334554444 77999999999999999999999875
|
| >1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-74 Score=576.46 Aligned_cols=354 Identities=25% Similarity=0.363 Sum_probs=326.4
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCC--ccCcccHHHHHHHHHH-HHHHHcCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP--HVTAEDQQTAMVKASE-ACEVLKESP 122 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~--~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (409)
|||++|+++++++|++.||++|.++.+.++.++|||+ ++|++||||+.+.+ .|++|+.+.+...+++ +.|.++|++
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~-d~G~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~p~l~G~d 79 (370)
T 1chr_A 1 MKIDAIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVY-SEGLVGVGEGGSVGGPVWSAECAETIKIIVERYLAPHLLGTD 79 (370)
T ss_dssp CCCCCCCEECCCCCCCCCCTTCCSSCCCCCCEECCBC-SSSCBCCEECCCBTTBTTSSCCHHHHHHHHHHHTHHHHTTSC
T ss_pred CEEEEEEEEEEEccCCCCeEccceEEeeeeEEEEEEE-ECCcEEEEccccCCCCCCCCCCHHHHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999999999999999999999 99999999998753 4777887766666665 689999999
Q ss_pred CCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHH-c
Q 015289 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRK-Q 200 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~-~ 200 (409)
+.+++.+|+.+++.+.|+ ..|++||||||||++||.+|+|+|+||||. +++||+|++++..++++..++++++++ +
T Consensus 80 ~~~~~~~~~~l~~~~~g~--~~A~said~ALwDl~gK~~g~Pl~~LLGg~~r~~v~~~~t~~~~~~~~~~~~~~~~~~~~ 157 (370)
T 1chr_A 80 AFNVSGALQTMARAVTGN--ASAKAAVEMALLDLKARALGVSIAELLGGPLRSAIPIAWTLASGDTKRDLDSAVEMIERR 157 (370)
T ss_dssp TTCHHHHHHHHHHHCSSC--HHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSEEEBEEEECSSSHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCCceeEEEEecCCCcHHHHHHHHHHHHHC
Confidence 999999999998877765 468999999999999999999999999996 579999999888788777666766666 8
Q ss_pred CCCeEEEecCC-ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhH
Q 015289 201 GFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 278 (409)
Q Consensus 201 Gf~~~KiKvG~-~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~ 278 (409)
||++||+|+|. ++++|++++++||++ ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|+
T Consensus 158 G~~~~KiKvg~~~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~~~~~~~~l~ 235 (370)
T 1chr_A 158 RHNRFKVKLGFRSPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGV--ELIEQPVGRENTQALRRLS 235 (370)
T ss_dssp CCCEEEEECSSSCSHHHHHHHHHHHHHSSTTCCEEEECTTCCCTTHHHHHTHHHHTTTE--EEEECCSCTTCHHHHHHHH
T ss_pred CCCEEEEecCCCCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCC--CEEECCCCcccHHHHHHHH
Confidence 99999999995 789999999999998 6789999999999999999999999999986 5999999999999999987
Q ss_pred HHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHH
Q 015289 279 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHL 357 (409)
Q Consensus 279 ~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hl 357 (409)
+ ++++||++||++++.++++++++.+++|++|+|++++| ++++++++++|+++|+++++|||++|++++++++|+
T Consensus 236 ~----~~~iPia~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~hl 311 (370)
T 1chr_A 236 D----NNRVAIMADESLSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASGIASYGGTMLDSTIGTSVALQL 311 (370)
T ss_dssp H----HSCSEEEESSSCCSHHHHHHHHTTTSCSEEEECTTTSCSHHHHHHHHHHHHHHTCEEEECCSCCTTHHHHHHHHH
T ss_pred h----hCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCeEEecCCCccHHHHHHHHHH
Confidence 5 67999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred HccCCCCce-eccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 358 SAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 358 aaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
+++++|+.+ +|+++|+.+.+|++.++++++||++.+|++||||+++|++.|
T Consensus 312 aaa~~~~~~~~~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 363 (370)
T 1chr_A 312 YSTVPSLPFGCELIGPFVLADTLSHEPLEIRDYELQVPTGVGHGMTLDEDKV 363 (370)
T ss_dssp HTTSSCCTTCBCCCTGGGSSCCSBSSCCEEETTEEECCCCSBTSCCBCHHHH
T ss_pred HHhCCCCccchhcccchhhhhcccCCCceeECCEEECCCCCcCCcccCHHHH
Confidence 999999887 588888878899999899999999999999999999999875
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-73 Score=571.97 Aligned_cols=355 Identities=19% Similarity=0.267 Sum_probs=319.9
Q ss_pred eeeeEeEEEEEEEEecCcc--ceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCC
Q 015289 44 FTVDVQRAENRPLNVPLIA--PFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKES 121 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~--p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~ 121 (409)
|.|||++|+++++++|+++ ||+++.++++.++.++|||+||+|++||||+.. ++++.++...+ ++++.|.|+|+
T Consensus 1 m~MkI~~i~~~~~~~pl~~~~p~~~a~~~~~~~~~~~V~v~td~G~~G~GE~~~-~~~~~~~~~~~---i~~l~p~l~G~ 76 (389)
T 3ozy_A 1 MSLKITEVKAHALSTPIPERMRVESGAGLKLNRQMILVEVRTDEGVTGVGSPSG-PYDLAVLKRAI---EDVIGPQLIGE 76 (389)
T ss_dssp -CCCEEEEEEEEEEEECCGGGCCEETTEEBCEEEEEEEEEEETTSCCEEECCCS-SSCHHHHHHHH---HHTTHHHHTTS
T ss_pred CCCEEEEEEEEEEeccCcCCCcccccccccccceEEEEEEEECCCCEEEEecCC-CCCchHHHHHH---HHHHHHHHcCC
Confidence 5799999999999999999 999999999999999999999999999999983 33334444333 45588999999
Q ss_pred CCCCHHHHHHHHHhh--cC----CChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCe-eeeeeee-c-CCCHHHHH
Q 015289 122 PAMALGSVFGVVAGL--LP----GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNT-ITTDITI-P-IVSPAEAA 191 (409)
Q Consensus 122 ~~~~~~~~~~~~~~~--~~----g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~-i~~~~~i-~-~~~~~~~~ 191 (409)
++.+++.+|+.+++. ++ +.....|++||||||||++||.+|+|||+||||. +++ +|+|.++ + ..+++++.
T Consensus 77 d~~~~~~~~~~l~~~~~~~~~g~~~~~~~A~said~AlwDl~gK~~g~Pl~~LLGg~~r~~~v~~y~~~~~~~~~~e~~~ 156 (389)
T 3ozy_A 77 DPANINYLWHKVFHGEVSRNLGHRSVGIAAMSGVDIALWDLKGRAMNQPIYQLLGGKFHTRGVRAYASSIYWDLTPDQAA 156 (389)
T ss_dssp CTTCHHHHHHHHHHHTHHHHHCSBSHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTSCSSTTCEEEEEEEECSSCCHHHHH
T ss_pred CcchHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHHHHHhHhHcCCCHHHHhCCcccCCceeeEEecCCCCCCHHHHH
Confidence 999999999998764 32 1234678999999999999999999999999998 678 9999998 7 78999999
Q ss_pred HHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCC
Q 015289 192 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 270 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d 270 (409)
+.+++++++||++||+|+|.++++|++++++||++ ++++.|++|+|++|+.++|+++++.|+++++. |||||++++|
T Consensus 157 ~~a~~~~~~G~~~iKiKvG~~~~~d~~~v~avR~a~g~d~~l~vDan~~~~~~~A~~~~~~l~~~~i~--~iEqP~~~~d 234 (389)
T 3ozy_A 157 DELAGWVEQGFTAAKLKVGRAPRKDAANLRAMRQRVGADVEILVDANQSLGRHDALAMLRILDEAGCY--WFEEPLSIDD 234 (389)
T ss_dssp HHHHHHHHTTCSEEEEECCSCHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTCS--EEESCSCTTC
T ss_pred HHHHHHHHCCCCEEeeccCCCHHHHHHHHHHHHHHcCCCceEEEECCCCcCHHHHHHHHHHHHhcCCC--EEECCCCccc
Confidence 99999999999999999999999999999999997 89999999999999999999999999999874 9999999999
Q ss_pred HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHH
Q 015289 271 WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRL 349 (409)
Q Consensus 271 ~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i 349 (409)
++++++|++ +++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++ +|++
T Consensus 235 ~~~~~~l~~---~~~~iPIa~dE~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~~~h~~-~~~i 310 (389)
T 3ozy_A 235 IEGHRILRA---QGTPVRIATGENLYTRNAFNDYIRNDAIDVLQADASRAGGITEALAISASAASAHLAWNPHTF-NDII 310 (389)
T ss_dssp HHHHHHHHT---TCCSSEEEECTTCCHHHHHHHHHHTTCCSEECCCTTTSSCHHHHHHHHHHHHHTTCEECCCCT-TSHH
T ss_pred HHHHHHHHh---cCCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEecCC-CcHH
Confidence 999999861 368999999999999999999999999999999999997 99999999999999999999976 8999
Q ss_pred HHHHHHHHHccCCCCceeccccc-cccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 350 AMGFAGHLSAGLGCFKFIDLDTP-LLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 350 ~~~~~~hlaaa~~~~~~~e~~~p-~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
++++++||++++||+.++|++.. ..+.++++.++++++||++.+|++||||+++|+|.|
T Consensus 311 ~~aa~~hlaaa~~~~~~~e~d~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 370 (389)
T 3ozy_A 311 TVAANLHLVAASPHPAMFEWDITHNDLMTRLASYDLKLENGLVQPPQGPGLGFEIDWDFV 370 (389)
T ss_dssp HHHHHHHHHHHCCSCCCEEEECSSCGGGTTSBSCCCCCBTTEECCCCSSBTCSCBCHHHH
T ss_pred HHHHHHHHHHhCCCCeeEEecCccchhhHhhccCCceeECCEEECCCCCcCCcccCHHHH
Confidence 99999999999999988887642 234567788888999999999999999999999875
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-72 Score=562.58 Aligned_cols=354 Identities=35% Similarity=0.542 Sum_probs=332.3
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHcCCCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPAM 124 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~~ 124 (409)
|||++|+++++++|++.||+++.++++.++.++|+|+|++|.+||||+.+.+.+++|+...+...+++ +.|.|+|+++.
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~l~~~l~~~l~g~~~~ 80 (366)
T 1tkk_A 1 MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSIESAIHHVLKPALLGKSLA 80 (366)
T ss_dssp CBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEECCCTTTTCCCHHHHHHHHHHTHHHHHTTCBGG
T ss_pred CEEEEEEEEEEEccccCCEEecCeeEEEeeEEEEEEEECCCCEEEEEecCCCCcCCCCHHHHHHHHHHHHHHHHcCCCcc
Confidence 89999999999999999999999999999999999999999999999998888888888777777777 89999999999
Q ss_pred CHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHcCCCe
Q 015289 125 ALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTT 204 (409)
Q Consensus 125 ~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~ 204 (409)
+++.+|+.+.+...++ +.+++||||||||+.||..|+|+|+||||.++++|+|++++..+++++.+.+++++++||++
T Consensus 81 ~~~~~~~~l~~~~~~~--~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~v~~~~~~~~~~~~~~~~~a~~~~~~Gf~~ 158 (366)
T 1tkk_A 81 GYEAILHDIQHLLTGN--MSAKAAVEMALYDGWAQMCGLPLYQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQT 158 (366)
T ss_dssp GHHHHHHHHHHSSSSC--HHHHHHHHHHHHHHHHHHTTSBHHHHHTCCCSEEEBCEEECSCCHHHHHHHHHHHHHHTCCE
T ss_pred cHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCceeeeEEecCCCHHHHHHHHHHHHHcCCCe
Confidence 9999999998766554 46899999999999999999999999999778999999999889999999999999999999
Q ss_pred EEEecCC-ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHh--CCCCCceeecCCCCCCHHHHHHhHHH
Q 015289 205 LKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE--MGVTPVLFEQPVHRDDWEGLGHVSHI 280 (409)
Q Consensus 205 ~KiKvG~-~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~--~~l~~~~iEeP~~~~d~~~~~~l~~~ 280 (409)
+|+|+|. +++.|++++++||++ ++++.|++|+|++|+.++|+++++.|++ +++ .|||||++++|++++++|++
T Consensus 159 iKik~g~~~~~~d~~~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~~i--~~iEqP~~~~d~~~~~~l~~- 235 (366)
T 1tkk_A 159 LKIKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGI--ELVEQPVHKDDLAGLKKVTD- 235 (366)
T ss_dssp EEEECCSSCHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHTTCCE--EEEECCSCTTCHHHHHHHHH-
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCc--eEEECCCCcccHHHHHHHHh-
Confidence 9999996 899999999999997 7999999999999999999999999999 886 59999999999999999975
Q ss_pred hhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHc
Q 015289 281 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSA 359 (409)
Q Consensus 281 ~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaa 359 (409)
++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++||++||++++++++|+++
T Consensus 236 ---~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~~a~~~laa 312 (366)
T 1tkk_A 236 ---ATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGSMIETKLGITAAAHFAA 312 (366)
T ss_dssp ---HCSSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHH
T ss_pred ---hCCCCEEEcCCCCCHHHHHHHHHhCCCCEEEeehhhhcCHHHHHHHHHHHHHcCCcEEecCccccHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred cCCCCceeccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCC
Q 015289 360 GLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDN 407 (409)
Q Consensus 360 a~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~ 407 (409)
+++++.++|+++|+++.+|++.+++.++||++.+|++||||+++|++.
T Consensus 313 a~~~~~~~el~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~ 360 (366)
T 1tkk_A 313 SKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLGIIGAALL 360 (366)
T ss_dssp HCTTEEEECCCGGGGBSSCCEEESCEEETTEEECCCSSBTCEEEECC-
T ss_pred cCCCCceecccchhhcccccccCCceEECCEEECCCCCccceEecccc
Confidence 999999999999887778888888999999999999999999999863
|
| >3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-72 Score=566.73 Aligned_cols=345 Identities=19% Similarity=0.271 Sum_probs=317.3
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccC---CccCcccHHHHHHHHHHHHHHHcCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL---PHVTAEDQQTAMVKASEACEVLKESP 122 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~---~~~~~e~~~~~~~~~~~~~~~l~g~~ 122 (409)
|||++|+++.+++|++.||++ +.++|||+||+|++||||+.+. |.+++|+. .+ .+.+.|.|+|++
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~--------~~~~V~v~td~G~~G~GE~~~~~~~p~~~~e~~--~i--~~~l~p~liG~d 68 (391)
T 3gd6_A 1 MKITDLELHAVGIPRHTGFVN--------KHVIVKIHTDEGLTGIGEMSDFSHLPLYSVDLH--DL--KQGLLSILLGQN 68 (391)
T ss_dssp CCEEEEEEEEEEEEBTTSCEE--------EEEEEEEEETTSCEEEEEECCCSSSSSCCCCHH--HH--HHHHHHHHTTCC
T ss_pred CEEEEEEEEEEecccCCCccc--------ceEEEEEEECCCCEEEeccccccCCCccchhHH--HH--HHHHHHHhCCCC
Confidence 899999999999999999876 6899999999999999999875 66777765 21 245789999999
Q ss_pred CCCHHHHHHHHHhhcC-----CChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeec----CCCHHHHHH
Q 015289 123 AMALGSVFGVVAGLLP-----GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIP----IVSPAEAAE 192 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~-----g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~----~~~~~~~~~ 192 (409)
+.+++.+|+.+++... +.....|+|||||||||++||.+|+|||+||||. +++||+|.+++ ..+++++.+
T Consensus 69 ~~~~~~~~~~l~~~~~~~~~~~~g~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~r~~v~~y~t~~~~~~~~~~e~~~~ 148 (391)
T 3gd6_A 69 PFDLMKINKELTDNFPETMYYYEKGSFIRNGIDNALHDLCAKYLDISVSDFLGGRVKEKIKVCYPIFRHRFSEEVESNLD 148 (391)
T ss_dssp TTCHHHHHHHHHHHSCCCSCTTCHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSEEEBCEEECCCSSTTHHHHHHH
T ss_pred ccCHHHHHHHHHHHhhhcccccCcchHHHHHHHHHHHHHHhcccCCcHHHHhCCCcCCeEEeeEEecccccCCCHHHHHH
Confidence 9999999999987543 2233578999999999999999999999999995 67899999998 778999999
Q ss_pred HHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhh-CCCcEEE-EeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCC
Q 015289 193 LASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 270 (409)
Q Consensus 193 ~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~-~~~~~l~-vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d 270 (409)
.+++++++||++||+|+|.++++|++++++||++ ++++.|+ +|+|++|+.++|+++++.|+++++.+.|||||++++|
T Consensus 149 ~a~~~~~~G~~~~KiKvG~~~~~d~~~v~avR~a~g~~~~l~~vDan~~~~~~~A~~~~~~l~~~~i~~~~iEqP~~~~d 228 (391)
T 3gd6_A 149 VVRQKLEQGFDVFRLYVGKNLDADEEFLSRVKEEFGSRVRIKSYDFSHLLNWKDAHRAIKRLTKYDLGLEMIESPAPRND 228 (391)
T ss_dssp HHHHHHHTTCCEEEEECSSCHHHHHHHHHHHHHHHGGGCEEEEEECTTCSCHHHHHHHHHHHTTCCSSCCEEECCSCTTC
T ss_pred HHHHHHHcCCCEEEEeeCCCHHHHHHHHHHHHHHcCCCCcEEEecCCCCcCHHHHHHHHHHHHhcCCCcceecCCCChhh
Confidence 9999999999999999999999999999999998 7999999 9999999999999999999999872249999999999
Q ss_pred HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHH
Q 015289 271 WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRL 349 (409)
Q Consensus 271 ~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i 349 (409)
++++++|++ ++++|| ||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||++
T Consensus 229 ~~~~~~l~~----~~~iPI--dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i 302 (391)
T 3gd6_A 229 FDGLYQLRL----KTDYPI--SEHVWSFKQQQEMIKKDAIDIFNISPVFIGGLTSAKKAAYAAEVASKDVVLGTTQELSV 302 (391)
T ss_dssp HHHHHHHHH----HCSSCE--EEECCCHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCCCCHH
T ss_pred HHHHHHHHH----HcCCCc--CCCCCCHHHHHHHHHcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCEEEecCCCccHH
Confidence 999999875 678999 999999999999999999999999999997 9999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCCce-eccccccccccCCCCCCeeeeCcEEecCC--CCCcccccCCCCc
Q 015289 350 AMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTN--ARGHGGFLHWDNI 408 (409)
Q Consensus 350 ~~~~~~hlaaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~i~~p~--~PGlG~~~d~d~~ 408 (409)
++++++||+++++|+.+ +|+++++.+.+|++.++++++||++.+|+ +||||+++|++.|
T Consensus 303 ~~aa~~hlaaa~~~~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~~~PGlGv~~d~~~l 364 (391)
T 3gd6_A 303 GTAAMAHLGCSLTNINHTSDPTGPELYVGDVVKNRVTYKDGYLYAPDRSVKGLGIELDESLL 364 (391)
T ss_dssp HHHHHHHHHTTCSSCCSCBCCCGGGGBSCCSBSSCCCEETTEEECCCTTSSBTSCCBCHHHH
T ss_pred HHHHHHHHHHhCCCCCccccccchhhhhhccccCCceeECCEEEeCCCCCCCCCcccCHHHH
Confidence 99999999999999999 99999887788999988999999999999 9999999999875
|
| >3qld_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, isomerase; HET: MSE; 1.85A {Alicyclobacillus acidocaldarius LAA1} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-72 Score=565.54 Aligned_cols=350 Identities=25% Similarity=0.372 Sum_probs=317.9
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEecc--CCccCcccHHHHHHHHHH-HHHHHc---
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPV--LPHVTAEDQQTAMVKASE-ACEVLK--- 119 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~--~~~~~~e~~~~~~~~~~~-~~~~l~--- 119 (409)
|||++|+++++++||+.||++|.++++.++.++|||+|++|++||||+.+ .|.|++|+...+...+++ +.|.++
T Consensus 1 MkI~~i~~~~~~lpl~~p~~~s~g~~~~~~~~~V~v~td~G~~G~GE~~~~~~p~~~~e~~~~~~~~l~~~l~p~l~~~~ 80 (388)
T 3qld_A 1 MSLQTCVLHRLSLPLKFPMRTAHGHIREKQAILVQLVDADGIEGWSECVALAEPTYTEECTDTAWVMLVHHLVPRFARWL 80 (388)
T ss_dssp -CEEEEEEEEEEEEEEEEEECSSSEEEEEEEEEEEEEETTSCEEEEEECCCSSTTSSSCCHHHHHHHHHHTHHHHHHHHH
T ss_pred CEEEEEEEEEEecccCCceEccceEEEeeeEEEEEEEECCCCEEEEecccCCCCccccccHHHHHHHHHHHHHHHHhhhh
Confidence 89999999999999999999999999999999999999999999999985 467888988777766665 789999
Q ss_pred ----CCCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCCC-HHHHHHHH
Q 015289 120 ----ESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVS-PAEAAELA 194 (409)
Q Consensus 120 ----g~~~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~-~~~~~~~~ 194 (409)
|+++.+++.+++.+. .++|+ +.|++||||||||++||..|+|+|+||||.+++||+|.+++..+ ++++.+++
T Consensus 81 ~~~~G~~~~~~~~~~~~~~-~~~g~--~~A~said~ALwDl~gk~~g~Pl~~LLGg~r~~v~~~~~~~~~~~~e~~~~~~ 157 (388)
T 3qld_A 81 RAASQDQDVDPRTVCEALR-DVRGN--RMSVAAIEMAVWDWYAARTGQPLVGLLGGGRDRVEVSATLGMSESLDVLIQSV 157 (388)
T ss_dssp TSGGGSSCCCGGGGGGGGT-TCCSC--HHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCSEEEBEEEECCCSCHHHHHHHH
T ss_pred cccCCCCccCHHHHHHHHH-HccCc--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCeEEEeEEecCCCCHHHHHHHH
Confidence 999998888876663 34554 46899999999999999999999999999888999999999876 99999999
Q ss_pred HHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHH
Q 015289 195 SKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGL 274 (409)
Q Consensus 195 ~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~ 274 (409)
++++++||+++|+|+|. ++|++++++||++.|++.|++|+|++|++++|++ ++.|+++++ .|||||++++|++++
T Consensus 158 ~~~~~~G~~~~K~Kv~~--~~d~~~v~avR~~~~~~~l~vDaN~~~~~~~A~~-~~~l~~~~i--~~iEeP~~~~d~~~~ 232 (388)
T 3qld_A 158 DAAVEQGFRRVKLKIAP--GRDRAAIKAVRLRYPDLAIAADANGSYRPEDAPV-LRQLDAYDL--QFIEQPLPEDDWFDL 232 (388)
T ss_dssp HHHHHTTCSEEEEECBT--TBSHHHHHHHHHHCTTSEEEEECTTCCCGGGHHH-HHHGGGGCC--SCEECCSCTTCHHHH
T ss_pred HHHHHhCCCeEEEEeCc--HHHHHHHHHHHHHCCCCeEEEECCCCCChHHHHH-HHHHhhCCC--cEEECCCCcccHHHH
Confidence 99999999999999985 6899999999998899999999999999999986 899999987 499999999999999
Q ss_pred HHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHH
Q 015289 275 GHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGF 353 (409)
Q Consensus 275 ~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~ 353 (409)
++|++ ++++|||+||++++.++++++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||+++.++
T Consensus 233 ~~l~~----~~~ipIa~dE~~~~~~~~~~~~~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~~aa 308 (388)
T 3qld_A 233 AKLQA----SLRTPVCLDESVRSVRELKLTARLGAARVLNVKPGRLGGFGATLRALDVAGEAGMAAWVGGMYETGVGRVH 308 (388)
T ss_dssp HHHHH----HCSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHH
T ss_pred HHHHH----hCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEECchhhCCHHHHHHHHHHHHHCCCeEEecCccchHHHHHH
Confidence 99975 67899999999999999999999999999999999997 99999999999999999999999999999999
Q ss_pred HHHHHccCCCCcee-cccc-ccccccCCCCCCe-eeeCcEEecCCCCCcccccCCCCc
Q 015289 354 AGHLSAGLGCFKFI-DLDT-PLLLSEDPVLDGY-EVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 354 ~~hlaaa~~~~~~~-e~~~-p~~~~~d~~~~~~-~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
++|+|+ ++|+.+. +++. ...+.+|++.+++ +++||++.+|++||||+++|++.|
T Consensus 309 ~~~laa-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 365 (388)
T 3qld_A 309 GLIAAA-LPLMRYATDLGPSDRYFEQDVLKEPIAFVEPGVIQVPQCAGVADWVDRDAV 365 (388)
T ss_dssp HHHHHT-STTBCSCBSCCCGGGTCSSCSBSSCCCCSBTTEEECCCCSSSGGGBCHHHH
T ss_pred HHHHHc-CCCCCcccccCcchhhHHhhcccCCCceeECCEEECCCCCcCCceeCHHHH
Confidence 999997 8887764 4543 3445678888878 899999999999999999999875
|
| >4h2h_A Mandelate racemase/muconate lactonizing enzyme; enolase, mandelate racemase subgroup, enzyme function initia EFI, structural genomics; HET: 0XW; 1.70A {Pelagibaca bermudensis} PDB: 2pmq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-71 Score=556.38 Aligned_cols=356 Identities=19% Similarity=0.330 Sum_probs=314.3
Q ss_pred cceeeeEeEEEEEEEEecC-ccceeeccceeeeeeEEEEEEEECCCceEEEEeccCC-ccCcccHHHHHHHHHHHHHHHc
Q 015289 42 QTFTVDVQRAENRPLNVPL-IAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP-HVTAEDQQTAMVKASEACEVLK 119 (409)
Q Consensus 42 ~~~~mkI~~i~~~~~~~pl-~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~-~~~~e~~~~~~~~~~~~~~~l~ 119 (409)
.+.+|||++|+++++++|+ +.||++|.++.+.++.++|||+||+|++||||+.+.+ .++.+........++.+.|.++
T Consensus 6 ~~~sMKI~~I~~~~~~lPl~~~p~~~a~g~~~~~~~~lV~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 85 (376)
T 4h2h_A 6 HHHSLKIAEIQLFQHDLPVVNGPYRIASGDVWSLTTTIVKIIAEDGTIGWGETCPVGPTYAEAHAGGALAALEVLASGLA 85 (376)
T ss_dssp ---CCBEEEEEEEEEEEEBTTCCBCCTTCCBSEEEEEEEEEEETTSCEEEEEECCSSSSSSSCCHHHHHHHHHHHHHTTT
T ss_pred CCCCeEEeEEEEEEEecccCCCCeEecCEEEEEEEEEEEEEEECCCCEEEEeecCCCCCcchhhHHHHHHHHHHHHHHhc
Confidence 4578999999999999998 5699999999999999999999999999999998753 4445555555555667889999
Q ss_pred CCCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHH
Q 015289 120 ESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYR 198 (409)
Q Consensus 120 g~~~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~ 198 (409)
|+++.+.+ ++..+.....++. .|++|||+||||++||.+|+|||+||||. ++++++|++++..+++++.+++++++
T Consensus 86 g~d~~~~~-~~~~~~~~~~~~~--~A~said~ALwDl~gK~~g~Pl~~LLGG~~r~~v~~y~s~~~~~~~~~~~~a~~~~ 162 (376)
T 4h2h_A 86 GAEALPLP-LHTRMDSLLCGHN--YAKSALDIAVHDLWGKRLGVPVHELLGGALTDSVSSYYSLGVMEPDEAARQALEKQ 162 (376)
T ss_dssp TCBSSHHH-HHHHHHHHCSCCH--HHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEEECEEEECSCCHHHHHHHHHHHH
T ss_pred CCccCcHH-HHHHHHHhhcccH--HHHHHHHHhhhHHHHHhcCCCceecCCCCcCCceeEeeecccCCHHHHHHHHHHHH
Confidence 99998776 4445556666664 57999999999999999999999999997 46899999999999999999999999
Q ss_pred HcCCCeEEEecC-CChhHHHHHHHHHHhh--CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHH
Q 015289 199 KQGFTTLKLKVG-KNLKEDIEVLRAIRAV--HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLG 275 (409)
Q Consensus 199 ~~Gf~~~KiKvG-~~~~~d~~~l~avr~~--~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~ 275 (409)
++||+++|+|+| .+++.|+++++++|++ ++++.||+|+|++|++++|+++++.++++++ |||||++ ++++++
T Consensus 163 ~~G~~~~KiKvg~~~~~~di~~v~~vr~a~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~---~iEeP~~--~~~~~~ 237 (376)
T 4h2h_A 163 REGYSRLQVKLGARPIEIDIEAIRKVWEAVRGTGIALAADGNRGWTTRDALRFSRECPDIPF---VMEQPCN--SFEDLE 237 (376)
T ss_dssp HHTCSEEEEECCSSCHHHHHHHHHHHHHHHTTSCCEEEEECTTCCCHHHHHHHHHHCTTSCE---EEESCSS--SHHHHH
T ss_pred hcCceEEEEecCCCCHHHHHHHHHHHHhhccCCeeEEEEeeccCCCHHHHHHHHHHHhhccc---cccCCcc--hhhhHh
Confidence 999999999999 4678999999999985 6999999999999999999999999998863 9999995 577888
Q ss_pred HhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHH
Q 015289 276 HVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFA 354 (409)
Q Consensus 276 ~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~ 354 (409)
+|++ .+++||++||++++..++.++++.+++|++|+|++++| ++++++++++|+++|+++++|++++++++.+++
T Consensus 238 ~l~~----~~~~pia~dE~~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~ia~~a~~~gi~~~~~~~~~~~i~~aa~ 313 (376)
T 4h2h_A 238 AIRP----LCHHALYMDEDGTSLNTVITAAATSLVDGFGMKVSRIGGLQHMRAFRDFCAARNLPHTCDDAWGGDIVSAAC 313 (376)
T ss_dssp HHGG----GCCSCEEESTTCCSHHHHHHHHHTTCCSEECCBHHHHTSHHHHHHHHHHHHHHTCCEECBCSSCSHHHHHHH
T ss_pred hhhh----cccCccccCcccCCHHHHHHHHHhhccCccccccceeCCcHHHHHHHHHHHHcCCCEEeCCCCccHHHHHHH
Confidence 8763 68899999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred HHHHccCCCC--ceeccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCcC
Q 015289 355 GHLSAGLGCF--KFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409 (409)
Q Consensus 355 ~hlaaa~~~~--~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~~ 409 (409)
+|++++.++. ...++..|+.+.++.+.++++++||++.+|++||||+++|+|+|.
T Consensus 314 ~hlaa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~vp~~PGLGveld~e~L~ 370 (376)
T 4h2h_A 314 THIASTVLPRLMEGAWLAQPYVAEHYDAENGVRIEGGRIRVPQGPGLGLTIDPERFG 370 (376)
T ss_dssp HHHHTTSCGGGEEECCCSGGGBSCCSSTTTCCCEETTEEECCCSSBTSCCCCTTTTC
T ss_pred HHHHHhCCccccccccccCchhhhhhccCCCCeEECCEEECCCCCCCCcEECHHHcC
Confidence 9999987543 234456677777777888899999999999999999999999874
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-71 Score=555.04 Aligned_cols=354 Identities=24% Similarity=0.377 Sum_probs=329.1
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccC--CccCcccHHHHHHHHHH-HHHHHcCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKESP 122 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (409)
|||++|+++.+++|++.||+++.++.+.++.++|||+| +|++||||+.+. +.|++|+...+...+++ +.|.++|++
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~t-~G~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~~~l~G~d 79 (370)
T 1nu5_A 1 MKIEAISTTIVDVPTRRPLQMSFTTVHKQSYVIVQVKA-GGLVGIGEGGSVGGPTWGSESAETIKVIIDNYLAPLLVGKD 79 (370)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEE-TTEEEEEEECCSTTTTTSSCCHHHHHHHHHHTHHHHHTTSB
T ss_pred CEEEEEEEEEEEccccCCEEecceEEEeceeEEEEEEE-CCEEEEEEeccCCCCcccCCCHHHHHHHHHHhhHHHHcCCC
Confidence 89999999999999999999999999999999999999 999999999876 56888887777666765 789999999
Q ss_pred CCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHH-c
Q 015289 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRK-Q 200 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~-~ 200 (409)
+.+++.+|+.+.+..+++ ..+++||||||||+.||.+|+|+|+||||. ++++|+|++++..+++++.+.++++++ +
T Consensus 80 ~~~~~~~~~~l~~~~~~~--~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~v~~~~~~~~~~~e~~~~~a~~~~~~~ 157 (370)
T 1nu5_A 80 ASNLSQARVLMDRAVTGN--LSAKAAIDIALHDLKARALNLSIADLIGGTMRTSIPIAWTLASGDTARDIDSALEMIETR 157 (370)
T ss_dssp TTCHHHHHHHHHHHCSSC--HHHHHHHHHHHHHHHHHHTTCBHHHHHTCCSCSEEEBCEEECSSCHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCcCCceEeeEEecCCCHHHHHHHHHHHHHhC
Confidence 999999999998766554 468999999999999999999999999997 578999999988899999999999999 9
Q ss_pred CCCeEEEecCC-ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhH
Q 015289 201 GFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 278 (409)
Q Consensus 201 Gf~~~KiKvG~-~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~ 278 (409)
||+++|+|+|. +++.|++++++||++ ++++.|++|+|++|+.++|+++++.|+++++. |||||++++|++++++|+
T Consensus 158 Gf~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~--~iEqP~~~~~~~~~~~l~ 235 (370)
T 1nu5_A 158 RHNRFKVKLGARTPAQDLEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWIPRLEEAGVE--LVEQPVPRANFGALRRLT 235 (370)
T ss_dssp SCSEEEEECSSSCHHHHHHHHHHHHHHHGGGCEEEEECTTCCCHHHHHHHHHHHHHHTCC--EEECCSCTTCHHHHHHHH
T ss_pred CccEEEEecCCCChHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCcc--eEeCCCCcccHHHHHHHH
Confidence 99999999995 789999999999997 78999999999999999999999999999874 999999999999999997
Q ss_pred HHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHH
Q 015289 279 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHL 357 (409)
Q Consensus 279 ~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hl 357 (409)
+ ++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||+++.++++|+
T Consensus 236 ~----~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~hl 311 (370)
T 1nu5_A 236 E----QNGVAILADESLSSLSSAFELARDHAVDAFSLKLCNMGGIANTLKVAAVAEAAGISSYGGTMLDSTVGTAAALHV 311 (370)
T ss_dssp H----HCSSEEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEECCSSCCHHHHHHHHHH
T ss_pred H----hCCCCEEeCCCCCCHHHHHHHHHhCCCCEEEEchhhcCCHHHHHHHHHHHHHcCCcEEecCCcchHHHHHHHHHH
Confidence 5 57899999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred HccCCCCce-eccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 358 SAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 358 aaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
+++++++.+ +|+++|+.+.+|++.++++++||++.+|++||||+++|++.+
T Consensus 312 aaa~~~~~~~~e~~~~~~~~~d~~~~~~~~~~G~~~~p~~pGlGv~~d~~~l 363 (370)
T 1nu5_A 312 YATLPSLPYGCELIGPWVLGDRLTQQDLEIKDFEVHLPLGSGLGVDLDHDKV 363 (370)
T ss_dssp HTTSSCCTTCBCCCHHHHBSSCSBSSCCCEETTEEECCCSSBTSCCBCHHHH
T ss_pred HhcCCCCCcccccCchhhhccccccCCceEECCEEECCCCCCCCceeCHHHH
Confidence 999999988 888887666788888889999999999999999999999865
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-72 Score=558.59 Aligned_cols=353 Identities=24% Similarity=0.441 Sum_probs=329.8
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHcCCCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPAM 124 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~~ 124 (409)
|||++|+++.+++|++.||+++.++.+.++.++|+|+|++|.+||||+.+.+.+++|+...+...+++ +.|.++|+++.
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~v~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~i~~~l~~~l~g~d~~ 80 (369)
T 2p8b_A 1 MKITAIHLYAIRLPLRNPFVISYGSYSDMPSIIVKMETDEGIIGYGEGVADDHVTGESWESTFHTLKHTLTPALIGQNPM 80 (369)
T ss_dssp CCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCCHHHHSCCHHHHHHHHHHTHHHHHTTCCTT
T ss_pred CEEEEEEEEEEeccccCCeEecceeEEeeeEEEEEEEECCCCEEEEEecCCCCcCCCCHHHHHHHHHHHHHHHHcCCCcc
Confidence 89999999999999999999999999999999999999999999999998766677777777777777 89999999999
Q ss_pred CHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHHcCCC
Q 015289 125 ALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQGFT 203 (409)
Q Consensus 125 ~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~ 203 (409)
+++.+|+.+.+...++ +.+++||||||||+.||..|+|+|+||||. ++++|+|.+++..+++++.+.+++++++||+
T Consensus 81 ~~~~~~~~l~~~~~~~--~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~v~~~~~i~~~~~~~~~~~a~~~~~~Gf~ 158 (369)
T 2p8b_A 81 NIEKIHDMMDNTIYGV--PTAKAAIDIACFDIMGKKLNQPVYQLIGGRYHEEFPVTHVLSIADPENMAEEAASMIQKGYQ 158 (369)
T ss_dssp CHHHHHHHHHHHCSCC--HHHHHHHHHHHHHHHHHHTTSBGGGGTTCCCCSCEECCEEECSCCHHHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCceeeeEEecCCChHHHHHHHHHHHHcCcC
Confidence 9999999998766554 468999999999999999999999999997 6789999999988999999999999999999
Q ss_pred eEEEecCCChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHH-HHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHh
Q 015289 204 TLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAV-EVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA 281 (409)
Q Consensus 204 ~~KiKvG~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~-~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~ 281 (409)
.+|+|+|.+++.|++++++||++ ++++.|++|+|++|+.++|+ ++++.|+++++. |||||++++|++++++|++
T Consensus 159 ~iKik~g~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~~l~~~~i~--~iEqP~~~~d~~~~~~l~~-- 234 (369)
T 2p8b_A 159 SFKMKVGTNVKEDVKRIEAVRERVGNDIAIRVDVNQGWKNSANTLTALRSLGHLNID--WIEQPVIADDIDAMAHIRS-- 234 (369)
T ss_dssp EEEEECCSCHHHHHHHHHHHHHHHCTTSEEEEECTTTTBSHHHHHHHHHTSTTSCCS--CEECCBCTTCHHHHHHHHH--
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCc--EEECCCCcccHHHHHHHHH--
Confidence 99999999999999999999997 89999999999999999999 999999999874 9999999999999999975
Q ss_pred hccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHcc
Q 015289 282 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG 360 (409)
Q Consensus 282 ~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa 360 (409)
++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++||++||++++++++|++++
T Consensus 235 --~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~~a~~~laa~ 312 (369)
T 2p8b_A 235 --KTDLPLMIDEGLKSSREMRQIIKLEAADKVNIKLMKCGGIYPAVKLAHQAEMAGIECQVGSMVESSVASSAGFHVAFS 312 (369)
T ss_dssp --TCCSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCSSCCHHHHHHHHHHHTT
T ss_pred --hCCCCEEeCCCCCCHHHHHHHHHhCCCCEEEeecchhCCHHHHHHHHHHHHHcCCcEEecCCCccHHHHHHHHHHHHc
Confidence 67899999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred CCCCceeccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 361 LGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 361 ~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
+|++.++|+++|+++.+| .+++.++||++.+|++||||+++|++.|
T Consensus 313 ~~~~~~~el~~~~~~~~~--~~~~~~~~G~~~~p~~PGlGv~~d~~~l 358 (369)
T 2p8b_A 313 KKIITSVELTGPLKFTKD--IGNLHYDVPFIRLNEKPGLGIEINEDTL 358 (369)
T ss_dssp CTTEEEECCCHHHHBSCC--SSCCCCBTTEECCCCCSBTCCCCCHHHH
T ss_pred CCCCceeccCcchhcccc--CCCceeECCEEeCCCCCcCCCccCHHHH
Confidence 999999999888766666 6778899999999999999999999865
|
| >4hpn_A Putative uncharacterized protein; enolase, enzyme function initiative, EFI, structural genomic isomerase; 1.60A {Agrobacterium tumefaciens} PDB: 4ggb_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-71 Score=556.92 Aligned_cols=350 Identities=20% Similarity=0.307 Sum_probs=306.4
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (409)
|||++|+++.+++||++||+++.++++.++.++|||+||+|++||||+.+.+. . .. ...+.+.|+|+|+++.+
T Consensus 1 MKIt~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~i~td~G~~G~GE~~~~~~----~-~~--~~~~~~~~~liG~d~~~ 73 (378)
T 4hpn_A 1 MKITAVRTHLLEHRLDTPFESASMRFDRRAHVLVEIECDDGTVGWGECLGPAR----P-NA--AVVQAYSGWLIGQDPRQ 73 (378)
T ss_dssp CCEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEECSCHH----H-HH--HHHHHHHTTTTTSCTTC
T ss_pred CEEEEEEEEEEeccCCCCeECCCEEEEEEEEEEEEEEECCCCEEEEEecCCcc----h-HH--HHHHHHHHHHcCCChHH
Confidence 99999999999999999999999999999999999999999999999975321 1 11 12345789999999999
Q ss_pred HHHHHHHHHhhcCCC----hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCC-CeeeeeeeecCC-----CHHHHHHHHH
Q 015289 126 LGSVFGVVAGLLPGH----QFASVRAAVEMALIDAVAKSVSMPLWRLFGGVS-NTITTDITIPIV-----SPAEAAELAS 195 (409)
Q Consensus 126 ~~~~~~~~~~~~~g~----~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~-~~i~~~~~i~~~-----~~~~~~~~~~ 195 (409)
++.+|+.+++..... ....|++|||+||||++||.+|+|+|+||||.. +++++|.+.+.. .+++.+++++
T Consensus 74 ~e~~~~~l~~~~~~~~~~g~~~~A~said~AlwDl~gk~~g~Pl~~lLGg~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 153 (378)
T 4hpn_A 74 TEKIWAVLYNALRDQGQRGLSLTALSGIDIALWDIKGKHYGASISMLLGGRWRESVRAYATGSFKRDNVDRVSDNASEMA 153 (378)
T ss_dssp HHHHHHHHHHHTCTTCSSTHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEEEEEEECCCBCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHhhhhccCccccccCCccccCcceeeeeccccccchhHHHHHHHHH
Confidence 999999998754322 134689999999999999999999999999975 689999886542 3566777788
Q ss_pred HHHHcCCCeEEEecCCChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHH
Q 015289 196 KYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGL 274 (409)
Q Consensus 196 ~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~ 274 (409)
+++++||+++|+|+|.++++|+++++++|++ ++++.||+|+|++|++++|+++++.|+++++ .|||||++++|++++
T Consensus 154 ~~~~~Gf~~~K~k~g~~~~~di~~v~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEeP~~~~d~~~~ 231 (378)
T 4hpn_A 154 ERRAEGFHACKIKIGFGVEEDLRVIAAVREAIGPDMRLMIDANHGYTVTEAITLGDRAAGFGI--DWFEEPVVPEQLDAY 231 (378)
T ss_dssp HHHHTTCSEEEEECCSCHHHHHHHHHHHHHHHTTTSEEEEECTTCCCHHHHHHHHHHHGGGCC--SCEECCSCTTCHHHH
T ss_pred HHHHhccceecccccCChHHHHHHHHHHHHhcCCcEEEEEecCcccCHHHHHHHHhhhhhccc--chhhcCCCccchhhh
Confidence 8889999999999999999999999999997 8999999999999999999999999999997 499999999999999
Q ss_pred HHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHH
Q 015289 275 GHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGF 353 (409)
Q Consensus 275 ~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~ 353 (409)
++|++ ++++|||+||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+ ++++++.++
T Consensus 232 ~~l~~----~~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~ia~~A~~~gi~v~~h~-~~~~i~~aa 306 (378)
T 4hpn_A 232 ARVRA----GQPIPVAGGETWHGRYGMWQALSAGAVDILQPDLCGCGGFSEIQKIATLATLHGVRIVPHV-WGTGVQIAA 306 (378)
T ss_dssp HHHHH----HSSSCEEECTTCCHHHHHHHHHHTTCCSEECCBTTTTTHHHHHHHHHHHHHHHTCEECCBC-CSSHHHHHH
T ss_pred HHHHh----hCCceeeCCcCccchHhHHHHHHcCCCCEEeeCCeeCCChhHHHHHHHHHHHcCCeEEeCC-CCcHHHHHH
Confidence 99975 68999999999999999999999999999999999998 9999999999999999998875 589999999
Q ss_pred HHHHHccCCCCc--------eecccc-ccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCcC
Q 015289 354 AGHLSAGLGCFK--------FIDLDT-PLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409 (409)
Q Consensus 354 ~~hlaaa~~~~~--------~~e~~~-p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~~ 409 (409)
++|+++++++.. +.|++. ...+.++++.++++++||++.+|++||||+++|+|+|+
T Consensus 307 ~~h~~aa~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l~ 371 (378)
T 4hpn_A 307 ALQFMAAMTPDPVRVNPIEPIMEFDRTHNPFRQAVLREPLEAVNGVVTIPDGPGLGIEINRDALT 371 (378)
T ss_dssp HHHHHHHCCCSSCCSSCCCCCEEEECSCCHHHHHTBSSCCCCBTTEEECCCSSBTSCCBCHHHHH
T ss_pred HHHHHHHcCcccccccccccceeeccccchhhhhhccCCCeeECCEEECCCCCCCcceECHHHHh
Confidence 999999876532 233332 12245677888899999999999999999999998763
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-71 Score=560.21 Aligned_cols=357 Identities=24% Similarity=0.347 Sum_probs=316.2
Q ss_pred eeeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCc-cCcccHHHHHHHHHH-HHH-HHcC
Q 015289 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPH-VTAEDQQTAMVKASE-ACE-VLKE 120 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~-~~~e~~~~~~~~~~~-~~~-~l~g 120 (409)
|+|||++|+++++++|++.||+++.++++.++.++|+|+|++|.+||||+.+.+. |++++...+...+++ +.| .|+|
T Consensus 1 m~MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~i~~~l~~~~l~G 80 (397)
T 2qde_A 1 MSLKITKVEVIPISTPMKRAQLMRGATLARIDGVLLKLHSDEGLVGIADAGDTSSWYRGETQDSITSMICDFFAPKVLLG 80 (397)
T ss_dssp --CCEEEEEEEEEEECCCC-----------EEEEEEEEEETTSCEEEEECCCCCTTTTCCCHHHHHHHHHHTHHHHTTTT
T ss_pred CCCEEEEEEEEEEeeeccCCeEeccceEeeCceEEEEEEECCCCEEEEEEecccCccCCCCHHHHHHHHHHhhhhHhhcC
Confidence 5699999999999999999999999999999999999999999999999998764 677777777777776 889 8999
Q ss_pred CCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHH
Q 015289 121 SPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRK 199 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~ 199 (409)
+++.+++.+|+.+....+| .+.+++||||||||+.||..|+|+|+||||. ++++|+|++++..+++++.+.++++++
T Consensus 81 ~d~~~~~~l~~~l~~~~~~--~~~a~~aid~AlwDl~ak~~g~Pl~~llGg~~~~~vp~~~~~g~~~~e~~~~~a~~~~~ 158 (397)
T 2qde_A 81 EDPTKIEKIVGRMDILTRD--NNQAKATVDFALHDLVGKRFGVPVYQLLGGKTIERIPLGLVLGAGEPEAVAEEALAVLR 158 (397)
T ss_dssp CCTTCHHHHHHHHHHHCSS--CHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSSEEBCEECCCSCHHHHHHHHHHHHH
T ss_pred CChHhHHHHHHHhhhhhcc--chhHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCCCcceEEECCCCCHHHHHHHHHHHHH
Confidence 9999999999988544444 3578999999999999999999999999997 579999999887899999999999999
Q ss_pred cCCCeEEEecCCChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhH
Q 015289 200 QGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 278 (409)
Q Consensus 200 ~Gf~~~KiKvG~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~ 278 (409)
+||+.+|+|+|.+++.|++++++||++ ++++.|++|+|++|+.++|+++++.|+++++. |||||++++|++++++|+
T Consensus 159 ~Gf~~vKik~g~~~~~~~e~v~avR~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~--~iEqP~~~~~~~~~~~l~ 236 (397)
T 2qde_A 159 EGFHFVKLKAGGPLKADIAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNLS--KIEQPLPAWDLDGMARLR 236 (397)
T ss_dssp HTCSCEEEECCSCHHHHHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCCS--CEECCSCTTCHHHHHHHH
T ss_pred hhhhheeecccCCHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHHhCCCC--EEECCCChhhHHHHHHHH
Confidence 999999999999999999999999998 89999999999999999999999999999874 999999999999999987
Q ss_pred HHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHH
Q 015289 279 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHL 357 (409)
Q Consensus 279 ~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hl 357 (409)
+ ++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|||++|++++++++|+
T Consensus 237 ~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~ig~aa~~hl 312 (397)
T 2qde_A 237 G----KVATPIYADESAQELHDLLAIINKGAADGLMIKTQKAGGLLKAQRWLTLARLANLPVICGCMVGSGLEASPAAHL 312 (397)
T ss_dssp T----TCSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCCEEECCCSCCHHHHHHHHHH
T ss_pred h----hCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHH
Confidence 4 67899999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred HccCC------C-----CceeccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 358 SAGLG------C-----FKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 358 aaa~~------~-----~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
+++++ + ..++++++|+.+.+|++.++++++||++.+|++||||+++|++.+
T Consensus 313 aa~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 374 (397)
T 2qde_A 313 LAANDWIAQFPQENAGPLHIHDCLNSRDIDNDIALNVPRFEGGYLYPNDGPGLGIELNEDLV 374 (397)
T ss_dssp HHHCTTGGGSCBCCCHHHHHTTCSSGGGCCCCSBTTCCEEETTEEECCCSSBTCCCBCHHHH
T ss_pred HHhCCcccccccccccceeeeecCCchhhhhccccCCceEECCEEECCCCCcCCcccCHHHH
Confidence 99998 6 234566777666788888889999999999999999999999865
|
| >3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-71 Score=555.17 Aligned_cols=355 Identities=18% Similarity=0.279 Sum_probs=309.9
Q ss_pred CCCcccccccccceeeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHH
Q 015289 31 APTSFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVK 110 (409)
Q Consensus 31 ~~~~~~~~~~~~~~~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~ 110 (409)
..+.|.|++... .|||++|+++++++|++.||+++.++.+.++.++|||+|++|++||||+.+.+. +.+. ....
T Consensus 14 ~~~~~~~~~m~~--~mkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~v~td~G~~G~GE~~~~~~-~~~~---~~~~ 87 (383)
T 3toy_A 14 GTENLYFQSMMT--TAAITGVTARAVITPMKRPLRNAFGVIDSGPLVLIDVTTDQGVTGHSYLFAYTR-LALK---PLVH 87 (383)
T ss_dssp -----------C--CCBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEESSSCEEEEEEECSSG-GGHH---HHHH
T ss_pred ChhhccccccCC--CCEEEEEEEEEEeccCCCcccCccccccceeEEEEEEEECCCCEEEEEeeCCCC-chHH---HHHH
Confidence 456788885333 399999999999999999999999999999999999999999999999987432 1222 2223
Q ss_pred H-HHHHHHHcCCCCCCHHHHHHHHHhhc--CCC--hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCC
Q 015289 111 A-SEACEVLKESPAMALGSVFGVVAGLL--PGH--QFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIV 185 (409)
Q Consensus 111 ~-~~~~~~l~g~~~~~~~~~~~~~~~~~--~g~--~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~ 185 (409)
+ +.+.|.|+|+++.+++ +|+.+++.. .|+ ....|++||||||||++||..|+|||+||||..++||+|.+++..
T Consensus 88 i~~~l~p~l~G~d~~~~e-~~~~l~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~~~v~~y~s~g~~ 166 (383)
T 3toy_A 88 LVEDIGRELAGKALVPVD-LMKAMDAKFRLLGWQGLVGMAVSGLDMAFWDALGQLAGKPVVELLGGSARPIPAYDSYGVL 166 (383)
T ss_dssp HHHHHHHHTTTCBCCHHH-HHHHHHHHTTTTCCSTHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCCCCEEEEEECSSC
T ss_pred HHHHHHHHhCCCCCCcHH-HHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceEEeEecCCC
Confidence 3 5688999999999999 999987653 233 235789999999999999999999999999998999999999889
Q ss_pred CHHHHHHHHHHHHHc-CCCeEEEecCC-ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCcee
Q 015289 186 SPAEAAELASKYRKQ-GFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 262 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~-Gf~~~KiKvG~-~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i 262 (409)
+++++.+++++++++ ||++||+|+|. ++++|++++++||++ ++++.|++|+|++|+.++|+++++.|+++++ .||
T Consensus 167 ~~e~~~~~a~~~~~~~G~~~~KlKvG~~~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~i 244 (383)
T 3toy_A 167 DARDDERTLRTACDEHGFRAIKSKGGHGDLATDEAMIKGLRALLGPDIALMLDFNQSLDPAEATRRIARLADYDL--TWI 244 (383)
T ss_dssp CHHHHHHHHHHHHHTSCCCEEEEECCSSCHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCC--SEE
T ss_pred CHHHHHHHHHHHHHccCCcEEEEecCCCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCC--CEE
Confidence 999999999999999 99999999995 789999999999997 8999999999999999999999999999987 499
Q ss_pred ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEE
Q 015289 263 EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMI 341 (409)
Q Consensus 263 EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~ 341 (409)
|||++++|++++++|++ ++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++
T Consensus 245 EeP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~~~ 320 (383)
T 3toy_A 245 EEPVPQENLSGHAAVRE----RSEIPIQAGENWWFPRGFAEAIAAGASDFIMPDLMKVGGITGWLNVAGQADAASIPMSS 320 (383)
T ss_dssp ECCSCTTCHHHHHHHHH----HCSSCEEECTTCCHHHHHHHHHHHTCCSEECCCTTTTTHHHHHHHHHHHHHHHTCCBCC
T ss_pred ECCCCcchHHHHHHHHh----hcCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEee
Confidence 99999999999999875 67899999999999999999999999999999999998 99999999999999999999
Q ss_pred ccCCchHHHHHHHHHHHccCCCCceeccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 342 GGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 342 ~~~~es~i~~~~~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
|+|.+ +++|+++++||+.++|+.. +.++++.++++++|| +.+|++||||+++|+|.|
T Consensus 321 h~~~~------a~lhl~aa~p~~~~~e~~~---~~~~~~~~~~~~~~G-i~~p~~PGlGve~d~~~l 377 (383)
T 3toy_A 321 HILPE------ASAHVLPVTPTAHFLEVLD---FAGAILTEPLRVIDG-KVTAKGPGLGLAWNESAV 377 (383)
T ss_dssp CSCHH------HHHHHGGGCTTBCCEEECC---SSGGGBSSCCCCBTT-EECCCCSBTSCCBCHHHH
T ss_pred cCHHH------HHHHHHHhCCCCceeeccc---hhhhhccCCCeeeCC-EECCCCCcCCccCCHHHH
Confidence 99843 6789999999998888752 346777788899999 999999999999999876
|
| >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-72 Score=561.55 Aligned_cols=354 Identities=19% Similarity=0.289 Sum_probs=302.0
Q ss_pred eeeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHH-HHHHHHcCCC
Q 015289 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS-EACEVLKESP 122 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~-~~~~~l~g~~ 122 (409)
..|||++|+++.+++|++.||++|.++.+.++.++|||+||+|++||||+.+.....++..... .++ .+.|.|+|++
T Consensus 8 ~~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~--~i~~~l~p~liG~d 85 (392)
T 3ddm_A 8 ASITPARVRAHVFRYPVSTPVKTSFGTMHDRPAVLVEVEDSDGAVGWGEVWCNFPACGAEHRAR--LVETVLAPLLTARA 85 (392)
T ss_dssp CCBCCCEEEEEEEEEEC-----------CEEEEEEEEEECTTSCEEEEECCCCSSTTHHHHHHH--HHHHTHHHHHTTSC
T ss_pred CCCEEEEEEEEEEeccCCCcccCcCceeecceEEEEEEEECCCCEEEEEeccCCCCCchHHHHH--HHHHHHHHHhCCCC
Confidence 4599999999999999999999999999999999999999999999999963211122222222 224 4889999999
Q ss_pred CCCHHHHHHHHHhh------cCCC--hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCCCHHHHHHHH
Q 015289 123 AMALGSVFGVVAGL------LPGH--QFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELA 194 (409)
Q Consensus 123 ~~~~~~~~~~~~~~------~~g~--~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~ 194 (409)
+.+++.+|+.+++. ..|+ ....|+|||||||||++||.+|+|||+||||..++||+|.+ +.. ++++.+.+
T Consensus 86 ~~~~~~~~~~l~~~~~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~~~v~~y~~-g~~-~e~~~~~a 163 (392)
T 3ddm_A 86 FADPAQAFAHLEARTAVLAIQTGEPGPLAQAIAGLDIALCDLAARRAGQPLWAWLGGSGDRIGVYAS-GIN-PENPEDVV 163 (392)
T ss_dssp BSSHHHHHHHHHHTTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHTTCSCCEEEEEEE-EEC-SSSHHHHH
T ss_pred cCCHHHHHHHHHhhhhhhhhhcCCcchHHHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCceeEEee-cCC-HHHHHHHH
Confidence 99999999999764 2343 23568999999999999999999999999998899999987 433 78888999
Q ss_pred HHHHHcCCCeEEEecCCChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCC-HH
Q 015289 195 SKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WE 272 (409)
Q Consensus 195 ~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~ 272 (409)
++++++||++||+|+|.++++|++++++||++ ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++| ++
T Consensus 164 ~~~~~~G~~~iKlK~g~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i--~~iEeP~~~~d~~~ 241 (392)
T 3ddm_A 164 ARKAAEGYRAFKLKVGFDDARDVRNALHVRELLGAATPLMADANQGWDLPRARQMAQRLGPAQL--DWLEEPLRADRPAA 241 (392)
T ss_dssp HHHHHHTCCCEEEECSSCHHHHHHHHHHHHHHHCSSSCEEEECTTCCCHHHHHHHHHHHGGGCC--SEEECCSCTTSCHH
T ss_pred HHHHHcCCCEEEEecCCCHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhCC--CEEECCCCccchHH
Confidence 99999999999999999999999999999998 8999999999999999999999999999987 49999999999 99
Q ss_pred HHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHH
Q 015289 273 GLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAM 351 (409)
Q Consensus 273 ~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~ 351 (409)
++++|++ ++++||++||++++.++++++++.+++|++|+|++++| ++++++++++|+++|+++++|+ ++|++++
T Consensus 242 ~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~-~~~~i~~ 316 (392)
T 3ddm_A 242 EWAELAQ----AAPMPLAGGENIAGVAAFETALAARSLRVMQPDLAKWGGFSGCLPVARAVVAAGLRYCPHY-LGAGIGL 316 (392)
T ss_dssp HHHHHHH----HCSSCEEECTTCCSHHHHHHHHHHTCEEEECCCTTTTTHHHHHHHHHHHHHHTTCEECCEE-CSCHHHH
T ss_pred HHHHHHH----hcCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCCHHHHHHHHHHHHHcCCEEEecC-CchHHHH
Confidence 9999875 67899999999999999999999999999999999998 9999999999999999999887 5999999
Q ss_pred HHHHHHHccCCC---CceeccccccccccCCCCCCe-eeeCcEEecCCCCCcccccCCCCc
Q 015289 352 GFAGHLSAGLGC---FKFIDLDTPLLLSEDPVLDGY-EVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 352 ~~~~hlaaa~~~---~~~~e~~~p~~~~~d~~~~~~-~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
++++|+++++|| ..|+|++.......|++.+++ +++||++.+|++||||+++|+|.|
T Consensus 317 aa~~hl~aa~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l 377 (392)
T 3ddm_A 317 QASAHLLAAVPGLASPGLLGVDANDNPLRSLLSPALATLHEGRITLGGAPGLGVTPDLAAL 377 (392)
T ss_dssp HHHHHHHHHSCCSSSCCEEEEESSCCHHHHTTCGGGGGCBTTEEECCSCSBTSCCCCHHHH
T ss_pred HHHHHHHHhCCCCCCCceEEecCCcchHHHhccCCcceeeCCEEECCCCCcCCceeCHHHH
Confidence 999999999999 678887753222234777788 899999999999999999999876
|
| >3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-71 Score=558.21 Aligned_cols=349 Identities=19% Similarity=0.292 Sum_probs=318.2
Q ss_pred eeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccC--CccCcccHHHHHHHHHH-HHHHHcCC
Q 015289 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKES 121 (409)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~ 121 (409)
.|||++|+++++++|++.||++|.++.+.++.++|||+| +|++||||+.+. |.|++|+...+...+++ +.|.|+|+
T Consensus 6 ~MkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~lV~v~t-~G~~G~GE~~~~~~p~~~~et~~~~~~~i~~~l~p~liG~ 84 (400)
T 3mwc_A 6 SARIDGVSLYEIVIPMKIPFQISSGTCYTRRSLVVEIRE-GDLFGYGESAPFEEPFYLGETLETTKVILKNHLLPMILGK 84 (400)
T ss_dssp CCCCCEEEEEEEEEECSSCCCBTTBCCCEEEEEEEEEEE-TTEEEEEEECCBSSTTSTTCBHHHHHHHHHHTHHHHHTTC
T ss_pred CcEEEEEEEEEEeccccCceEccCceEeeeeEEEEEEEE-CCeEEEEecccCCCCccccCcHHHHHHHHHHHHHHHHcCC
Confidence 399999999999999999999999999999999999999 999999999875 56888988877776765 78999999
Q ss_pred CCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhC-------------CCCCeeeeeeeecCC-C-
Q 015289 122 PAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG-------------GVSNTITTDITIPIV-S- 186 (409)
Q Consensus 122 ~~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLG-------------g~~~~i~~~~~i~~~-~- 186 (409)
++.+++.+|+.++..++|+. .|++||||||||++||..|+|||+||| +.+++||+|+++++. +
T Consensus 85 d~~~~e~~~~~l~~~~~g~~--~A~said~ALwDl~gk~~g~Pl~~LLGG~~~~~~~~~~~~~~r~~v~~~~s~g~~~~~ 162 (400)
T 3mwc_A 85 EPLSIEEFNHLIKNGIRGNH--FARCGVENAYWDLIAKKNKISLKAMIEKKMKNLGVKQEYLASNNYIESGAALGIPEDG 162 (400)
T ss_dssp CCSSHHHHHHHHHHSCCSCH--HHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHTTCCGGGGCBCSEEEBCEEECCCTTC
T ss_pred CCCCHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHcCCcHHHHhCCcccccccccccccCCCeEEeeEEeccCCCC
Confidence 99999999999987666653 589999999999999999999999999 567799999998864 6
Q ss_pred -HHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeec
Q 015289 187 -PAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 264 (409)
Q Consensus 187 -~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEe 264 (409)
++++.+++++++++||++||+|++. ++|++++++||++ ++++.|++|+|++|+.++ +++++.|+++++ .||||
T Consensus 163 ~~e~~~~~a~~~~~~G~~~iKlKv~~--~~d~~~v~avR~a~G~~~~L~vDaN~~w~~~~-~~~~~~l~~~~i--~~iEq 237 (400)
T 3mwc_A 163 RIETLIHQVEESLQEGYRRIKIKIKP--GWDVEPLQETRRAVGDHFPLWTDANSSFELDQ-WETFKAMDAAKC--LFHEQ 237 (400)
T ss_dssp CHHHHHHHHHHHHHHTCSCEEEECBT--TBSHHHHHHHHHHHCTTSCEEEECTTCCCGGG-HHHHHHHGGGCC--SCEES
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCc--chHHHHHHHHHHhcCCCCEEEEeCCCCCCHHH-HHHHHHHHhcCC--CEEeC
Confidence 9999999999999999999999964 7899999999998 799999999999999999 999999999987 49999
Q ss_pred CCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEcc
Q 015289 265 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG 343 (409)
Q Consensus 265 P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~ 343 (409)
|++++|++++++|++ ++++||++||++++.++++++++.+++|++|+|++++| ++++++++++|+++|+++++||
T Consensus 238 P~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~ 313 (400)
T 3mwc_A 238 PLHYEALLDLKELGE----RIETPICLDESLISSRVAEFVAKLGISNIWNIKIQRVGGLLEAIKIYKIATDNGIKLWGGT 313 (400)
T ss_dssp CSCTTCHHHHHHHHH----HSSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECC
T ss_pred CCChhhHHHHHHHHh----hCCCCEEEeCCcCCHHHHHHHHhcCCCCEEEEcchhhCCHHHHHHHHHHHHHcCCEEEecC
Confidence 999999999999875 67899999999999999999999999999999999997 9999999999999999999999
Q ss_pred CCchHHHHHHHHHHHccCCCCcee-cccccc-cccc--CCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 344 MVETRLAMGFAGHLSAGLGCFKFI-DLDTPL-LLSE--DPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 344 ~~es~i~~~~~~hlaaa~~~~~~~-e~~~p~-~~~~--d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
|+||++++++++|||+ ++|+.+. +++.+. .+.+ |++. +.++||++.+|++||||+++|++.|
T Consensus 314 ~~es~i~~aa~~hlaa-~~~~~~~~d~~~~~~~~~~~~d~~~--~~~~~G~i~~p~~PGlGve~d~~~l 379 (400)
T 3mwc_A 314 MPESGLGARFLISLAS-FRGFVFPADVAASEKWYGKGNDLVE--NTMTDGKIYVPDEPGASFDMTLSHL 379 (400)
T ss_dssp SCCCHHHHHHHHHHTT-BTTBCSCBCCCCHHHHHCTTTSSSC--CCEETTEEECCCSBTTTTTCCHHHH
T ss_pred CCCCHHHHHHHHHHHc-CCCCcceeccCchhhhhhcccCeeE--EEEECCEEECCCCCCcCcccCHHHH
Confidence 9999999999999988 9988764 455432 2344 7766 8899999999999999999999875
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-71 Score=554.08 Aligned_cols=341 Identities=21% Similarity=0.320 Sum_probs=299.6
Q ss_pred eeeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHH-HHHHHHHHHcCCC
Q 015289 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV-KASEACEVLKESP 122 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~-~~~~~~~~l~g~~ 122 (409)
|+|||++|+++.+++| ||.+ ++ ++.++|||+||+|++||||+. + +++...+.. .++.+.|.|+|++
T Consensus 1 m~MkI~~i~~~~~~~p---~~~~----~~-~~~~~V~v~td~G~~G~GE~~--~---~~~~~~~~~~~~~~l~p~liG~d 67 (393)
T 4dwd_A 1 MSLKIAKVEALSVAMG---DGTG----WM-PTSAFVRITAEDGTVGWGEAS--P---MLGGIASLGVVARDIAPFLEGQE 67 (393)
T ss_dssp -CCBEEEEEEEEEECC---C----------CEEEEEEEEETTSCEEEEEEC--C---GGGGHHHHHHHHHHTHHHHTTSB
T ss_pred CCCEEEEEEEEEEcCC---Cccc----cc-ceEEEEEEEECCCCEEEEEcc--C---cHHHHHHHHHHHHHHHHHHCCCC
Confidence 5799999999999998 6654 44 789999999999999999997 2 344444422 2456889999999
Q ss_pred CCCHHHHHHHHHhhcC--C--ChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeec---CCCHHHHHHHH
Q 015289 123 AMALGSVFGVVAGLLP--G--HQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIP---IVSPAEAAELA 194 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~--g--~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~---~~~~~~~~~~~ 194 (409)
+.+++.+|+.+++... | .....|+|||||||||++||.+|+|||+||||. +++||+|.+++ ..+++++.+++
T Consensus 68 ~~~~e~~~~~l~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pv~~LLGg~~r~~v~~y~s~~g~~~~~~e~~~~~a 147 (393)
T 4dwd_A 68 VLDHAVLLDRMMHRLVKLGPEGIATAALAACDIALWDLKGKLLGQPIYKLLGGAWRTRLPCYSSIGGNAARSVDEVVREV 147 (393)
T ss_dssp GGGHHHHHHHHHHHTGGGCCTTHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSEEEEEEEECCCSSSCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCceeeEEecCccCCCCHHHHHHHH
Confidence 9999999999986532 2 123478999999999999999999999999998 78999999962 46899999999
Q ss_pred -HHHHHcCCCeEEEecCC-------ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecC
Q 015289 195 -SKYRKQGFTTLKLKVGK-------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQP 265 (409)
Q Consensus 195 -~~~~~~Gf~~~KiKvG~-------~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP 265 (409)
++++++||++||+|+|. ++++|++++++||++ ++++.|++|+|++|+.++|+++++.|+++++. |||||
T Consensus 148 ~~~~~~~G~~~~KlKvG~~~~~~~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~--~iEqP 225 (393)
T 4dwd_A 148 ARRVEAEQPAAVKIRWDGDRTRCDVDIPGDIAKARAVRELLGPDAVIGFDANNGYSVGGAIRVGRALEDLGYS--WFEEP 225 (393)
T ss_dssp HHHHHHHCCSEEEEECCCCTTCCSCCHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHHHHTTCS--EEECC
T ss_pred HHHHHHcCCCEEEEccCCCCcccccCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhhCCC--EEECC
Confidence 99999999999999996 799999999999998 89999999999999999999999999999874 99999
Q ss_pred CCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccC
Q 015289 266 VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 266 ~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~ 344 (409)
++++|++++++|++ ++++||++||++++..+++++++.+ +|++|+|++++| ++++++++++|+++|+++++||+
T Consensus 226 ~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~-~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 300 (393)
T 4dwd_A 226 VQHYHVGAMGEVAQ----RLDITVSAGEQTYTLQALKDLILSG-VRMVQPDIVKMGGITGMMQCAALAHAHGVEFVPHQT 300 (393)
T ss_dssp SCTTCHHHHHHHHH----HCSSEEEBCTTCCSHHHHHHHHHHT-CCEECCCTTTTTHHHHHHHHHHHHHHHTCEECCCCC
T ss_pred CCcccHHHHHHHHh----hCCCCEEecCCcCCHHHHHHHHHcC-CCEEEeCccccCCHHHHHHHHHHHHHcCCEEeecCC
Confidence 99999999999875 6789999999999999999999999 999999999998 99999999999999999999999
Q ss_pred CchHHHHHHHHHHHccCCCC----ceeccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 345 VETRLAMGFAGHLSAGLGCF----KFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 345 ~es~i~~~~~~hlaaa~~~~----~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
++++++++++||++++||+ .++|+ +...+|++.++++++||++.+|++||||+++|+|.|
T Consensus 301 -~~~i~~aa~~hlaaa~p~~~~~~~~~e~---~~~~~~~~~~~~~~~~G~i~vp~~PGlGve~d~~~l 364 (393)
T 4dwd_A 301 -QPGVGHFANIHVLSTLMHMTKPVELADR---WDRGRPVFRNPAEPVDGHFALGDAPGLGIVVDEDEL 364 (393)
T ss_dssp -CSSHHHHHHHHHHHTCTTCCSCEEECTT---GGGGTTTBSSCCCCBTTEEECCCCSBTCCCBCHHHH
T ss_pred -CcHHHHHHHHHHHHhCCCcccccceeEe---ecCcccccCCCceeECCEEECCCCCcCCCccCHHHH
Confidence 9999999999999999998 55552 112237778888999999999999999999999875
|
| >4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-71 Score=556.43 Aligned_cols=345 Identities=20% Similarity=0.292 Sum_probs=308.2
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (409)
|||++|+++++++|++.||.+|.++.+.++.++|||+||+|++||||+.+ +++.. ..++.+.|.++|+++.+
T Consensus 24 MkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~v~td~G~~G~GE~~~-----g~~~~---~~i~~l~p~liG~d~~~ 95 (398)
T 4dye_A 24 MKITDVDVWVVNLPLVNPFTSSFETKTGETRTVVRVRTDSGVEGWGETMW-----GAPVA---AIVRRMAPDLIGTSPFA 95 (398)
T ss_dssp CCEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEEEC-----SHHHH---HHHHHHHHHHTTCCTTC
T ss_pred ceEEEEEEEEEeecccccccccccccccceEEEEEEEECCCCEEEEeecC-----chHHH---HHHHHHHHHHcCCCccC
Confidence 99999999999999999999999999999999999999999999999975 23322 23466899999999999
Q ss_pred HHHHHHHHHhh--cCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeee------cCC---CHHHHHHH
Q 015289 126 LGSVFGVVAGL--LPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITI------PIV---SPAEAAEL 193 (409)
Q Consensus 126 ~~~~~~~~~~~--~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i------~~~---~~~~~~~~ 193 (409)
++.+|+.++.. ..|.....|++||||||||++||..|+|||+||||. +++||+|.++ +.. ++++++++
T Consensus 96 ~~~~~~~l~~~~~~~g~~~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~r~~v~~y~s~~~~~~~g~~~~~~~e~~~~~ 175 (398)
T 4dye_A 96 LEAFHRKQHMVPFFYGYLGYAAIAAVDVACWDAMGKATGQSVTDLLGGAVRDEVPITALITRADAPGATPADLPKAMAEH 175 (398)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEEEBEEEECGGGSTTCCTTTHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhccccHHHHHHHHHHHHHHHHHHcCCcHHHHcCCCcCCeEEEEEEEeccccCCcccCCCHHHHHHH
Confidence 99999988542 111112468999999999999999999999999997 4799999987 443 36899999
Q ss_pred HHHHHHc-CCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHH
Q 015289 194 ASKYRKQ-GFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWE 272 (409)
Q Consensus 194 ~~~~~~~-Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~ 272 (409)
+++++++ ||++||+|+|.++++|++++++||++.+++.|++|+|++|++++|+++++.|+++++ .|||||++ |++
T Consensus 176 a~~~~~~~G~~~~K~KvG~~~~~d~~~v~avR~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i--~~iEqP~~--d~~ 251 (398)
T 4dye_A 176 AVRVVEEGGFDAVKLKGTTDCAGDVAILRAVREALPGVNLRVDPNAAWSVPDSVRAGIALEELDL--EYLEDPCV--GIE 251 (398)
T ss_dssp HHHHHHHHCCSEEEEECCSCHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCC--SEEECCSS--HHH
T ss_pred HHHHHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCCCCeEEeeCCCCCCHHHHHHHHHHHhhcCC--CEEcCCCC--CHH
Confidence 9999999 999999999998999999999999987999999999999999999999999999987 49999999 899
Q ss_pred HHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHH
Q 015289 273 GLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAM 351 (409)
Q Consensus 273 ~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~ 351 (409)
++++|++ ++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++||+.+++++.
T Consensus 252 ~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~~~e~~i~~ 327 (398)
T 4dye_A 252 GMAQVKA----KVRIPLCTNMCVVRFEDFAPAMRLNAVDVIHGDVYKWGGIAATKALAAHCETFGLGMNLHSGGELGIAT 327 (398)
T ss_dssp HHHHHHH----HCCSCEEESSSCCSGGGHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEECCSCCCHHHH
T ss_pred HHHHHHh----hCCCCEEeCCcCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEcCCcchHHHH
Confidence 9999875 67899999999999999999999999999999999997 999999999999999999999999999999
Q ss_pred HHHHHHHccCCCCceecccc-ccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 352 GFAGHLSAGLGCFKFIDLDT-PLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 352 ~~~~hlaaa~~~~~~~e~~~-p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
++++|+++++||+.+ +.+. ...+.+|++ ++++++||++.+|++||||+++|++.|
T Consensus 328 aa~l~laaa~p~~~~-~~d~~~~~~~~d~~-~~~~~~~G~i~vp~~PGlGve~d~~~l 383 (398)
T 4dye_A 328 AAHLAVVSSTPVLSR-AIDSMYYLHADDII-EPLHLENGRLRVPSGPGLGVSVDEDKL 383 (398)
T ss_dssp HHHHHHHHTCTTCCS-CBCCSGGGBSCCSB-SCCCEETTEEECCCSSBTCCCBCHHHH
T ss_pred HHHHHHHhcCCccce-eecccchhhhhhcc-CCceeeCCEEECCCCCCCCceeCHHHH
Confidence 999999999998765 3332 334556766 678999999999999999999999875
|
| >4h83_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, enzyme function initiative; 2.09A {Marine actinobacterium PHSC20C1} PDB: 3no1_A 3msy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-71 Score=555.86 Aligned_cols=350 Identities=22% Similarity=0.282 Sum_probs=294.4
Q ss_pred eeeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHH-HHHHHHcCCC
Q 015289 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS-EACEVLKESP 122 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~-~~~~~l~g~~ 122 (409)
..|||++|+++++++||++||++|.++.+.++.++|||+||+|++||||+.+. .++...+...++ .+.|.|+|++
T Consensus 18 ~~MkIt~Ie~~~~~~Pl~~p~~~s~g~~~~~~~vlV~i~td~G~~G~Ge~~~~----~~~~~~~~~~i~~~lap~LiG~d 93 (388)
T 4h83_A 18 HGLTITRIETIPMVAPLAREFRGSHYHMTHRATIVTRVHTDAGIIGEAYTGDE----HETMFDIDRIIHEELAPTLIGQD 93 (388)
T ss_dssp --CBEEEEEEEEEEEEC----------CCEEEEEEEEEEETTSCEEEEEECCC----CTTHHHHHHHHHHTTHHHHTTSB
T ss_pred CCCEEEEEEEEEEEeeccCCEECCCEEEEEEEEEEEEEEECCCCEEEEEecCC----cccHHHHHHHHHHHHHHHHcCCC
Confidence 46999999999999999999999999999999999999999999999999753 233333333344 3789999999
Q ss_pred CCCHHHHHHHHHhhcC----C-ChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecC--CCHHHHHHHHH
Q 015289 123 AMALGSVFGVVAGLLP----G-HQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI--VSPAEAAELAS 195 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~----g-~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~--~~~~~~~~~~~ 195 (409)
|.+++.+|+.+++... + .....|+|||||||||++||.+|+|||+||||.++++++|.+... .+++++.+.++
T Consensus 94 p~~ie~l~~~~~~~~~~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pl~~LLGg~~~~~~~y~~~~~~~~~~~~~~~~~~ 173 (388)
T 4h83_A 94 AMAIERLWDSGYKVTFDILRDRRLGLVALAAVNTAIWDAVGKALKMPLWKLWGGYRNELPMIAIGGYYGEPLGSIADEMH 173 (388)
T ss_dssp TTCHHHHHHHHGGGGCCTTSCHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHTTCSCSEEEEEEEECCTTCTTCSHHHHHH
T ss_pred hhHHHHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHcCCChhhhcCCCcCceEEEeeccccCCCHHHHHHHHH
Confidence 9999999999976431 1 123568999999999999999999999999999899999877543 24567888899
Q ss_pred HHHHcCCCeEEEecC-CChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCC-CCHH
Q 015289 196 KYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWE 272 (409)
Q Consensus 196 ~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~-~d~~ 272 (409)
+++++||+++|+|+| .++++|+++++++|++ ++++.||+|+|++|++++|+++++.|+++++ .|||||+++ +|++
T Consensus 174 ~~~~~G~~~~Kikvg~~~~~~d~~~v~avR~~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~--~~iEeP~~~~~d~~ 251 (388)
T 4h83_A 174 NYQELGLAGVKFKVGGLSAAEDAARITAAREAAGDDFIICIDANQGYKPAVAVDLSRRIADLNI--RWFEEPVEWHNDKR 251 (388)
T ss_dssp HHHHHTBSEEEEECSSSCHHHHHHHHHHHHHHHCSSSEEEEECTTCBCHHHHHHHHHHTTTSCC--CCEESCBCSTTHHH
T ss_pred HHHHcCCceEeecCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCcCCCHHHHHHHHHHhhhcCc--ceeecCcccccchH
Confidence 999999999999996 6899999999999997 8999999999999999999999999999987 499999986 5688
Q ss_pred HHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHH
Q 015289 273 GLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAM 351 (409)
Q Consensus 273 ~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~ 351 (409)
++++|++ ++++|||+||++++.++++++++.+++|++|+|++++| ++++++++++|+++|+++.+|+ ++
T Consensus 252 ~~~~l~~----~~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~kia~~A~~~gv~v~~h~--~~---- 321 (388)
T 4h83_A 252 SMRDVRY----QGSVPVCAGQTEFSASGCRDLMETGAIDVCNFDSSWSGGPTAWLRTAAIATSYDVQMGHHE--EP---- 321 (388)
T ss_dssp HHHHHHH----HSSSCEEECTTCSSHHHHHHHHHHTCCSEECCCGGGTTCHHHHHHHHHHHHHTTCEECCCS--CH----
T ss_pred HHHHHHh----hcCCCccCCccccChHhHHHHHHcCCCCeEeecceeCCCHHHHHHHHHHHHHCCCEEEecC--HH----
Confidence 8998874 68999999999999999999999999999999999997 9999999999999999887765 34
Q ss_pred HHHHHHHccCCCCceecccccc--ccccCCCCCCeeeeCcEEecCCCCCcccccCCCCcC
Q 015289 352 GFAGHLSAGLGCFKFIDLDTPL--LLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409 (409)
Q Consensus 352 ~~~~hlaaa~~~~~~~e~~~p~--~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~~ 409 (409)
++++|++++++|+.+.|+..+. .+..|++.++++++||++.+|++||||+++|+|.|+
T Consensus 322 ~~~~h~~aa~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGLGve~d~d~l~ 381 (388)
T 4h83_A 322 QVSTHLLASQPHGTIAECFHPDRDPFWWNMITNRPKLNNGTLTLSDRPGLGWDLNWDYID 381 (388)
T ss_dssp HHHHHHHHHSTTBCCEEEECTTTCHHHHHSBTTCCCCBTBEEECCSCSBTCCCBCHHHHH
T ss_pred HHHHHHHHHhhcCcceeecCcccchhhhhccCCCCeeECCEEECCCCCCCCeeeCHHHHH
Confidence 3568999999999888764332 234577788899999999999999999999999763
|
| >3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-71 Score=549.91 Aligned_cols=346 Identities=20% Similarity=0.268 Sum_probs=297.2
Q ss_pred eeEeEEEEEEEEecCccce-eeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHH-HHHHHHcCCCC
Q 015289 46 VDVQRAENRPLNVPLIAPF-TIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS-EACEVLKESPA 123 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~-~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~-~~~~~l~g~~~ 123 (409)
|||++|+++.+++|++.|| +++.++.+.++.++|||+||+|++||||+.+...++++ ......++ .+.|.|+|+++
T Consensus 1 MkI~~i~~~~~~~Pl~~p~~~~a~~~~~~~~~v~V~v~td~G~~G~GE~~~~~~~~~~--~~~~~~i~~~l~p~liG~d~ 78 (372)
T 3tj4_A 1 MKITAVEPFILHLPLTSESISDSTHSITHWGVVGAKITTSDGIEGYGFTGTHAHLPSD--RLITSCISDCYAPLLLGEDA 78 (372)
T ss_dssp CBEEEEEEEEEEEECC------------EEEEEEEEEEETTSCEEEEEEEECCCHHHH--HHHHHHHHHTTHHHHTTSBT
T ss_pred CEEEEEEEEEEEecCCCCccCCCccccCceeEEEEEEEECCCCEEEEeccCccccCcH--HHHHHHHHHHHHHHhCCCCh
Confidence 8999999999999999999 99999999999999999999999999999864321221 12223344 47899999999
Q ss_pred CCHHHHHHHHHhhc----CC--ChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCe-eeeeeeecC---CCHHHHHHH
Q 015289 124 MALGSVFGVVAGLL----PG--HQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-ITTDITIPI---VSPAEAAEL 193 (409)
Q Consensus 124 ~~~~~~~~~~~~~~----~g--~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~-i~~~~~i~~---~~~~~~~~~ 193 (409)
.+++.+|+.+++.. +| .....|++||||||||++||.+|+|||+||||..++ ||+|.+.+. .+++++.++
T Consensus 79 ~~~~~~~~~l~~~~~~~~~g~~g~~~~A~said~AlwDl~gk~~g~Pv~~llGg~~~~~v~~y~s~~~~~~~~~~~~~~~ 158 (372)
T 3tj4_A 79 SDHSRLWTKLARYPSLQWVGRAGITHLALAAVDVALWDIKAKKAGVPLWHYLGGARTAGVEAYNTDIGWLSFTLEDLLAG 158 (372)
T ss_dssp TCHHHHHHHHHTCHHHHTTCSSTHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSCEEEEECTTCCTTSCHHHHHHH
T ss_pred hhHHHHHHHHHHhhHhhcCCcccHHHHHHHHHHHHHHHHhccccCCcHHHHcCCCCCCCeEEEEecCCccCCCHHHHHHH
Confidence 99999999997632 23 234578999999999999999999999999998765 999988432 389999999
Q ss_pred HHHHHHc-CCCeEEEecC-CChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCC
Q 015289 194 ASKYRKQ-GFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 270 (409)
Q Consensus 194 ~~~~~~~-Gf~~~KiKvG-~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d 270 (409)
+++++++ ||++||+|+| .++++|++++++||++ ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++|
T Consensus 159 a~~~~~~~G~~~~K~Kvg~~~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~d 236 (372)
T 3tj4_A 159 SARAVEEDGFTRLKIKVGHDDPNIDIARLTAVRERVDSAVRIAIDGNGKWDLPTCQRFCAAAKDLDI--YWFEEPLWYDD 236 (372)
T ss_dssp HHHHHHTTCCCEEEEECCCSSHHHHHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHHHHHHTTTSCE--EEEESCSCTTC
T ss_pred HHHHHHccCCCEEEEcCCCCCHHHHHHHHHHHHHHcCCCCcEEeeCCCCCCHHHHHHHHHHHhhcCC--CEEECCCCchh
Confidence 9999999 9999999999 5789999999999998 7999999999999999999999999999986 59999999999
Q ss_pred HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEcc--CCch
Q 015289 271 WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG--MVET 347 (409)
Q Consensus 271 ~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~--~~es 347 (409)
++++++|++ ++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|| |.+
T Consensus 237 ~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~g~~~~- 311 (372)
T 3tj4_A 237 VTSHARLAR----NTSIPIALGEQLYTVDAFRSFIDAGAVAYVQPDVTRLGGITEYIQVADLALAHRLPVVPHAGEMSQ- 311 (372)
T ss_dssp HHHHHHHHH----HCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHHTTCCBCCCCTTTTT-
T ss_pred HHHHHHHHh----hcCCCEEeCCCccCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEecCchHHH-
Confidence 999999875 67899999999999999999999999999999999998 9999999999999999999999 765
Q ss_pred HHHHHHHHHHHccCCCCceeccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 348 RLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 348 ~i~~~~~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
+++|+++++||+.+.|++ | +.++++.++++++||++.+|++||||+++|++.|
T Consensus 312 -----~~~~l~aa~~~~~~~e~~-~--~~~~~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 364 (372)
T 3tj4_A 312 -----VHVHLSYWHPASTILEYI-P--WIKDHFEEPIHVRDGVYKRPEQPGASTTPLAESF 364 (372)
T ss_dssp -----THHHHHHHCTTBCCEEEC-C--SSGGGBSSCCCEETTEECCCCSSBCSCCBCHHHH
T ss_pred -----HHHHHhhhCCCCceeeec-h--HHHHhccCCCceeCCEEECCCCCCCCCcCCHHHH
Confidence 368999999999999887 4 3467788888999999999999999999999875
|
| >1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-70 Score=550.75 Aligned_cols=353 Identities=23% Similarity=0.336 Sum_probs=319.2
Q ss_pred ceeeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccC--CccCcccHHHHHHHHHH-HHHHHc
Q 015289 43 TFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLK 119 (409)
Q Consensus 43 ~~~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~ 119 (409)
...|||++|+++++++|++.||+++.++.+.++.++|+|+|++|.+||||+.+. +.|++|+...+...+++ +.|.|+
T Consensus 17 ~~~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~v~V~v~td~G~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~p~l~ 96 (386)
T 1wue_A 17 GSHMNIQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQGFGELVAFEQPDYVQETLVTERFIIQQHLIPLLL 96 (386)
T ss_dssp CCCCCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCCSSTTSSSCCHHHHHHHHHHTHHHHHT
T ss_pred CCcCEEEEEEEEEEecccCCCccccceEEecCcEEEEEEEECCCCEEEEEeecCCCCcccCCcHHHHHHHHHHHHHHHHc
Confidence 356999999999999999999999999999999999999999999999999864 45788888777766766 789999
Q ss_pred CCCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCC-CHHHHHHHHHHHH
Q 015289 120 ESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIV-SPAEAAELASKYR 198 (409)
Q Consensus 120 g~~~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~-~~~~~~~~~~~~~ 198 (409)
|+++.+++.+++.+.. ++|+ +.|++||||||||+.||..|+|+|+||||.++++|+|.+++.. +++++.+++++++
T Consensus 97 G~d~~~~~~l~~~l~~-~~g~--~~A~~aid~AlwDl~~k~~g~Pl~~llGg~~~~v~~~~~~g~~~~~~~~~~~a~~~~ 173 (386)
T 1wue_A 97 TEAIEQPQEVSTIFEE-VKGH--WMGKAALETAIWDLYAKRQQKSLTEFFGPTRRKIPVGISLGIQEDLPQLLKQVQLAV 173 (386)
T ss_dssp TSCCCSTHHHHHHGGG-SCSC--HHHHHHHHHHHHHHHHHHTTSBGGGGSSSCCSEEECCEEECCCSCHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHH-ccCc--hHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCeeEeeEEecCCCCHHHHHHHHHHHH
Confidence 9999999999988865 4554 5689999999999999999999999999987899999998854 6999999999999
Q ss_pred HcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhH
Q 015289 199 KQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 278 (409)
Q Consensus 199 ~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~ 278 (409)
++||+++|+|+|+ ++|++++++||++.|++.|++|+|++|+.++| ++++.|+++++ .|||||++++|++++++|+
T Consensus 174 ~~G~~~~KiKvg~--~~d~~~v~avr~a~~~~~l~vDaN~~~~~~~a-~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~ 248 (386)
T 1wue_A 174 EKGYQRVKLKIRP--GYDVEPVALIRQHFPNLPLMVDANSAYTLADL-PQLQRLDHYQL--AMIEQPFAADDFLDHAQLQ 248 (386)
T ss_dssp HTTCSCEEEECBT--TBSHHHHHHHHHHCTTSCEEEECTTCCCGGGH-HHHHGGGGSCC--SCEECCSCTTCSHHHHHHH
T ss_pred HhhhheEEEeeCc--HHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHH-HHHHHHHhCCC--eEEeCCCCcccHHHHHHHH
Confidence 9999999999984 67999999999988899999999999999999 99999999987 4999999999999999987
Q ss_pred HHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHH
Q 015289 279 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHL 357 (409)
Q Consensus 279 ~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hl 357 (409)
+ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||+++.++++|+
T Consensus 249 ~----~~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~ik~~~~GGit~~~~i~~~A~~~gi~~~~~~~~es~i~~aa~~hl 324 (386)
T 1wue_A 249 R----ELKTRICLDENIRSLKDCQVALALGSCRSINLKIPRVGGIHEALKIAAFCQENDLLVWLGGMFESGVGRALNLQF 324 (386)
T ss_dssp T----TCSSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHH
T ss_pred H----hcCCCEEeCCccCCHHHHHHHHHcCCCCEEEEchhhhCCHHHHHHHHHHHHHCCCeEEECCCcccHHHHHHHHHH
Confidence 4 67899999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred HccCCCCce-ecccccc-ccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 358 SAGLGCFKF-IDLDTPL-LLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 358 aaa~~~~~~-~e~~~p~-~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
| +++++.+ .+++.+. .+.+|++.+++.++||++.+|++||||+++|++.+
T Consensus 325 a-a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 376 (386)
T 1wue_A 325 A-SQPTFSFPGDISATERYFYEDIITEPFILEQGTMTVPQGLGIGVTLSQTNL 376 (386)
T ss_dssp H-TSTTCCSCCSCCCGGGTBSCCSBSSCCCEETTEEECCCSSBTCCCBCHHHH
T ss_pred H-hCCCCCcccccCchhhhhhhccccCCcEEECCEEECCCCCcCCceeCHHHH
Confidence 7 6888776 3444332 24678878888999999999999999999999865
|
| >3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-71 Score=550.61 Aligned_cols=344 Identities=17% Similarity=0.266 Sum_probs=302.7
Q ss_pred eeeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH---------H
Q 015289 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE---------A 114 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~---------~ 114 (409)
|.|||++|+++.+++|++.+ .+++..++ ++|||+||+|++||||+. ++.......+++ +
T Consensus 1 ~~MkI~~i~~~~~~~P~~~~----~~~~~~~~-~~V~v~td~G~~G~GE~~-------~~~~~~~~~i~~~~~~~~~~~l 68 (374)
T 3sjn_A 1 MVLKITDIEVLHLRVPAMDA----DCEWGEDA-VIVKVHTDKGIVGVGEAD-------SSPLVVQACIEAPQTNFYCNGL 68 (374)
T ss_dssp -CCBEEEEEEEEEESSCTTS----CCCTTSEE-EEEEEEETTSCEEEEEES-------SCHHHHHHHHHCCCSBTTBCCH
T ss_pred CCcEEEEEEEEEEeccCcCC----cCcccceE-EEEEEEECCCCEEEEcCC-------CChHHHHHHHHhhhccchHhHH
Confidence 56999999999999987766 33334445 899999999999999932 233333344554 8
Q ss_pred HHHHcCCCCCCHHHHHHHHHhhcCCC----hhhHHHHHHHHHHHHHHHhhcCCchHHHhCC-CCCeeeeeeeecCCCH--
Q 015289 115 CEVLKESPAMALGSVFGVVAGLLPGH----QFASVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSP-- 187 (409)
Q Consensus 115 ~~~l~g~~~~~~~~~~~~~~~~~~g~----~~~~a~said~AlwDl~gk~~g~Pl~~LLGg-~~~~i~~~~~i~~~~~-- 187 (409)
.|.|+|+++.+++.+|+.+++...++ ....|++||||||||++||.+|+|||+|||| .+++||+| ++..++
T Consensus 69 ~p~liG~d~~~~~~~~~~l~~~~~~~~~~g~~~~A~said~ALwDl~gK~~g~Pv~~LLGg~~r~~v~~y--~~~~~~~~ 146 (374)
T 3sjn_A 69 KRLLIGENALEIERLWNKMYWGSNYMGRRGAGIHAISAIDIALWDIAGQFYGVPVHTLLGGKYRDKIRCY--GTFIPADK 146 (374)
T ss_dssp HHHHTTSBTTCHHHHHHHHHHHTTTTCSSBHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSEEEEE--EEECCCSS
T ss_pred HHHHcCCCcccHHHHHHHHHHhhhhcCCccHHHHHHHHHHHHHHHHHHhHcCCcHHHHcCCCcCCceeEE--eccCCCCC
Confidence 89999999999999999998754332 2346899999999999999999999999999 56799999 334344
Q ss_pred -HHHHHHHHHHHHcCCCeEEEecC---CChhHHHHHHHHHHhh-CCCcEEEEeCCCCCC-HHHHHHHHHHHHhCCCCCce
Q 015289 188 -AEAAELASKYRKQGFTTLKLKVG---KNLKEDIEVLRAIRAV-HPDSSFILDANEGYK-PQEAVEVLEKLYEMGVTPVL 261 (409)
Q Consensus 188 -~~~~~~~~~~~~~Gf~~~KiKvG---~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~-~~~A~~~~~~L~~~~l~~~~ 261 (409)
+++.+.+++++++||++||+|+| .++++|++++++||++ ++++.|++|+|++|+ .++|+++++.|+++++ .|
T Consensus 147 ~e~~~~~a~~~~~~Gf~~iKlk~g~~g~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~d~~~A~~~~~~l~~~~i--~~ 224 (374)
T 3sjn_A 147 PEDNVAIVQGLKDQGFSSIKFGGGVMGDDPDTDYAIVKAVREAAGPEMEVQIDLASKWHTCGHSAMMAKRLEEFNL--NW 224 (374)
T ss_dssp GGGGHHHHHHHHTTTCSEEEEECTTTTSCHHHHHHHHHHHHHHHCSSSEEEEECTTTTCSHHHHHHHHHHSGGGCC--SE
T ss_pred HHHHHHHHHHHHHcCCCEEEeccCCCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHhhhcCc--eE
Confidence 88999999999999999999998 4789999999999998 899999999999999 9999999999999987 49
Q ss_pred eecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEE
Q 015289 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 262 iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~ 340 (409)
||||++++|++++++|++ ++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|++++
T Consensus 225 iEqP~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~ 300 (374)
T 3sjn_A 225 IEEPVLADSLISYEKLSR----QVSQKIAGGESLTTRYEFQEFITKSNADIVQPDITRCGGITEMKKIYDIAQMNGTQLI 300 (374)
T ss_dssp EECSSCTTCHHHHHHHHH----HCSSEEEECTTCCHHHHHHHHHHHHCCSEECCBTTTSSHHHHHHHHHHHHHHHTCEEC
T ss_pred EECCCCcccHHHHHHHHh----hCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEE
Confidence 999999999999999875 68999999999999999999999999999999999998 9999999999999999999
Q ss_pred EccCCchHHHHHHHHHHHccCCCCceecccc-ccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 341 IGGMVETRLAMGFAGHLSAGLGCFKFIDLDT-PLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 341 ~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~-p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
+||+ ++++++++++||++++||+.+.|+.. +..+.+|++.++++++||++.+|++||||+++|+|.|
T Consensus 301 ~h~~-~~~i~~aa~~hlaaa~~~~~~~e~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 368 (374)
T 3sjn_A 301 PHGF-STGILLHASVHFLAACEQGTLMEFSQSSSPLFTSLVKNQLQFDNGFVAVSDAPGLGIELDEELI 368 (374)
T ss_dssp CBCC-SCHHHHHHHHHHHHTCTTCCEEEEECCCCHHHHHSBTTCCCEETTEEECCCSSBTCCCBCHHHH
T ss_pred ecCC-CcHHHHHHHHHHHHhCCCCcEEEecCCcchhhhhhccCCCeeeCcEEECCCCCCCCCCcCHHHH
Confidence 9999 89999999999999999999988753 3344678888889999999999999999999999876
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-70 Score=544.93 Aligned_cols=352 Identities=23% Similarity=0.334 Sum_probs=320.2
Q ss_pred eeeeEeEEEEEEEEecCccceeeccce--eeeeeEEEEEEEECCCceEEEEeccC-CccCcccHHHHHHHHHHHHHHHcC
Q 015289 44 FTVDVQRAENRPLNVPLIAPFTIATSR--LDQVENVAIRIELSNGCVGWGEAPVL-PHVTAEDQQTAMVKASEACEVLKE 120 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p~~~a~~~--~~~~~~~iVrl~td~G~~G~GE~~~~-~~~~~e~~~~~~~~~~~~~~~l~g 120 (409)
|+|||++|+++++++|++.||+++.++ .+.++.++|||+|++|.+||||+.+. +.|++|+...+...++.++|.|+|
T Consensus 1 m~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~l~~l~~~l~g 80 (378)
T 2qdd_A 1 MSLRITRLTVFHLDLPLAKPYWLSGGRLKFDRLDSTYLRIDTDEGVTGWGEGCPWGHSYLPAHGPGLRAGIATLAPHLLG 80 (378)
T ss_dssp -CCCEEEEEEEEEEEEEEEEEECCC--CEEEEEEEEEEEEEETTSCEEEEEECCSTTTSSSCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEEEEEEeccccCceecccCcccccccceEEEEEEECCCCEEEEEEecCCCCcCCCCHHHHHHHHHHHHHHHCC
Confidence 569999999999999999999999998 88899999999999999999999987 788888877777667778899999
Q ss_pred CCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHH
Q 015289 121 SPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRK 199 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~ 199 (409)
+++.+++.+|+.+...++| .+.+++||||||||+.||..|+|+|+||||. ++++|+|++++..+++++.+.++++++
T Consensus 81 ~d~~~~~~~~~~l~~~~~g--~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~v~~~~~~~~~~~e~~~~~a~~~~~ 158 (378)
T 2qdd_A 81 LDPRSLDHVNRVMDLQLPG--HSYVKSPIDMACWDILGQVAGLPLWQLLGGEAATPVPINSSISTGTPDQMLGLIAEAAA 158 (378)
T ss_dssp CCTTCHHHHHHHHHHHSCS--CHHHHHHHHHHHHHHHHHHHTCBHHHHTTCSSCCCEEBEEEECSCCHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCCCceEEEecCCCHHHHHHHHHHHHH
Confidence 9999999999998655555 3578999999999999999999999999997 578999999888899999999999999
Q ss_pred cCCCeEEEecCC-ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHh
Q 015289 200 QGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 277 (409)
Q Consensus 200 ~Gf~~~KiKvG~-~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l 277 (409)
+||+.+|+|+|. +++.|++++++||++ ++++.|++|+|++|+.++|+++++.|+ ++ + |||||++ |++++++|
T Consensus 159 ~Gf~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~-~~--i-~iEqP~~--d~~~~~~l 232 (378)
T 2qdd_A 159 QGYRTHSAKIGGSDPAQDIARIEAISAGLPDGHRVTFDVNRAWTPAIAVEVLNSVR-AR--D-WIEQPCQ--TLDQCAHV 232 (378)
T ss_dssp HTCCEEEEECCSSCHHHHHHHHHHHHHSCCTTCEEEEECTTCCCHHHHHHHHTSCC-CC--C-EEECCSS--SHHHHHHH
T ss_pred HhhhheeecCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHhC-CC--c-EEEcCCC--CHHHHHHH
Confidence 999999999996 899999999999997 789999999999999999999999998 76 5 9999998 89999998
Q ss_pred HHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHH
Q 015289 278 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 356 (409)
Q Consensus 278 ~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~h 356 (409)
++ ++++||++||++.++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|||.||+++.++++|
T Consensus 233 ~~----~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~h 308 (378)
T 2qdd_A 233 AR----RVANPIMLDECLHEFSDHLAAWSRGACEGVKIKPNRVGGLTRARQIRDFGVSVGWQMHIEDVGGTALADTAALH 308 (378)
T ss_dssp HT----TCCSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEECCSSCCHHHHHHHHH
T ss_pred HH----hCCCCEEECCCcCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHcCCeEEecCCCCcHHHHHHHHH
Confidence 64 67899999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred HHccCCCC--ce-eccccccccccCCCCC-CeeeeCcEEecCCCCCcccccCCCCcC
Q 015289 357 LSAGLGCF--KF-IDLDTPLLLSEDPVLD-GYEVSGAVYKFTNARGHGGFLHWDNIA 409 (409)
Q Consensus 357 laaa~~~~--~~-~e~~~p~~~~~d~~~~-~~~~~~G~i~~p~~PGlG~~~d~d~~~ 409 (409)
|+++++|+ .| .++ +| ++.+|++.+ +++++||++.+|++||||+++|++.++
T Consensus 309 laaa~~~~~~~~~~d~-~~-~~~~d~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~ 363 (378)
T 2qdd_A 309 LAASTPEANRLASWLG-HA-HLADDPIPGQGARNRDGLATPPSAPGLGVIPDPEALG 363 (378)
T ss_dssp HHHTSCTTTBCCBCCG-GG-GBSCCSSTTCSCCCBTTEECCCCSSBTCCCCCGGGSC
T ss_pred HHHcCCCcceeccccc-cc-hhhhccccCCCceEECCEEECCCCCcCCCccCHHHHh
Confidence 99999984 33 345 45 346788888 889999999999999999999999874
|
| >3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-70 Score=548.74 Aligned_cols=344 Identities=20% Similarity=0.319 Sum_probs=309.4
Q ss_pred eeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHH-HHHHHHHcCCCC
Q 015289 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA-SEACEVLKESPA 123 (409)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~-~~~~~~l~g~~~ 123 (409)
.|||++|+++++++|++.||+++.++.+.++.++|||+|++|++||||+.+.+. .. ......+ +.+.|.|+|+++
T Consensus 27 ~mkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~v~td~G~~G~GE~~~~~~---~~-~~~~~~~~~~l~p~liG~d~ 102 (390)
T 3ugv_A 27 TLTFRKLTARPVLLKLQRPVTARIATIPDWPLILIDIETEEGVPGRAYLEPYVP---KA-MKYLVPALHDMSDMLAGQPL 102 (390)
T ss_dssp CCBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCCEEEEECCSCG---GG-HHHHHHHHHHHHHHHTTSBC
T ss_pred CCEEEEEEEEEEEecCCCCccCcccccccceEEEEEEEECCCCEEEEEeecCCC---ch-HHHHHHHHHHHHHHHCCCCc
Confidence 499999999999999999999999999999999999999999999999987432 11 1222223 568899999999
Q ss_pred CCHHHHHHHHHhhc--CCC--hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecC---CCHHHHHHHHHH
Q 015289 124 MALGSVFGVVAGLL--PGH--QFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI---VSPAEAAELASK 196 (409)
Q Consensus 124 ~~~~~~~~~~~~~~--~g~--~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~---~~~~~~~~~~~~ 196 (409)
.++ .+|+.+++.. .|+ ....|++||||||||++||.+|+|||+||||..++||+|.+++. .+++++.+++++
T Consensus 103 ~~~-~~~~~l~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~~~v~~y~s~g~~~~~~~e~~~~~a~~ 181 (390)
T 3ugv_A 103 APA-EIYDKTRKSLHFVGYAGLSMIAASGVDMAVWDALARAANMPLCTLLGGTPGSVKAYNSNGLWLKSPAEVAAEAVEL 181 (390)
T ss_dssp CHH-HHHHHHHHHTGGGCSSTHHHHHHHHHHHHHHHHHHHHTTSBHHHHTTCCCCEEEEEECSCCCSSCHHHHHHHHHHH
T ss_pred chH-HHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCceEEEEecccccCCCHHHHHHHHHH
Confidence 999 9999987643 232 23579999999999999999999999999999999999999877 789999999999
Q ss_pred HHHc---CCCeEEEecCC-ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCH
Q 015289 197 YRKQ---GFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW 271 (409)
Q Consensus 197 ~~~~---Gf~~~KiKvG~-~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~ 271 (409)
++++ ||++||+|+|. ++++|++++++||++ ++++.|++|+|++|++++|+++++.|+++++ .|||||++++|+
T Consensus 182 ~~~~~~~G~~~iKlKvG~~~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEqP~~~~d~ 259 (390)
T 3ugv_A 182 KAEGQGTGFKGLKLRMGRDDPAVDIETAEAVWDAVGRDTALMVDFNQGLDMAEAMHRTRQIDDLGL--EWIEEPVVYDNF 259 (390)
T ss_dssp HHTTCTTCCSEEEEECCCSSHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHTTSCC--SEEECCSCTTCH
T ss_pred HHHhhhCCCcEEEEecCCCCHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHhhCC--CEEECCCCcccH
Confidence 9999 99999999995 789999999999997 8999999999999999999999999999987 499999999999
Q ss_pred HHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 015289 272 EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLA 350 (409)
Q Consensus 272 ~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~ 350 (409)
+++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.+
T Consensus 260 ~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~~~~i~~~A~~~gi~~~~h~~~~---- 331 (390)
T 3ugv_A 260 DGYAQLRH----DLKTPLMIGENFYGPREMHQALQAGACDLVMPDFMRIGGVSGWMRAAGVAGAWGIPMSTHLYPE---- 331 (390)
T ss_dssp HHHHHHHH----HCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBHHHHTHHHHHHHHHHHHHHHTCCBCCBSCHH----
T ss_pred HHHHHHHH----hcCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEeecCHHH----
Confidence 99999875 67899999999999999999999999999999999998 9999999999999999999999843
Q ss_pred HHHHHHHHccCCCCceeccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 351 MGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 351 ~~~~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
+++|+++++||+.++|+.. +.++++.++++++||++.+|++||||+++|+|.|
T Consensus 332 --a~lhl~aa~p~~~~~e~~~---~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l 384 (390)
T 3ugv_A 332 --VGAHVMRVTETAHWLEWQS---WADPILQEPYALSDGDLIVPDKPGLGLDWDEDVV 384 (390)
T ss_dssp --HHHHHHTTCTTBCCEEECC---TTGGGBSSCCCEETTEEECCSSSBTCCCBCHHHH
T ss_pred --HHHHHHHhCCCCceeeccc---hhhhhccCCCeeECCEEECCCCCcCCCCcCHHHH
Confidence 6789999999998888752 3467777888999999999999999999999875
|
| >1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-70 Score=550.80 Aligned_cols=354 Identities=25% Similarity=0.383 Sum_probs=318.6
Q ss_pred cceeeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccC--CccCcccHHHHHHHHHH-HHHHH
Q 015289 42 QTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVL 118 (409)
Q Consensus 42 ~~~~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l 118 (409)
++..|||++|+++.+++|++.||+++.++.+.++.++|+|+|++|.+||||+.+. +.|++|+...+...+++ +.|.|
T Consensus 16 ~~~~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~v~V~v~td~G~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~p~l 95 (393)
T 1wuf_A 16 RGSHMYFQKARLIHAELPLLAPFKTSYGELKSKDFYIIELINEEGIHGYGELEAFPLPDYTEETLSSAILIIKEQLLPLL 95 (393)
T ss_dssp ---CEECCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSSCEEEEEECCCSSTTSSSCCHHHHHHHHHHTTHHHH
T ss_pred CCCcCEEEEEEEEEEeeeccCCeEecceeEecCcEEEEEEEECCCCEEEEEeecCCCCcccCCCHHHHHHHHHHHHHHHH
Confidence 3466999999999999999999999999999999999999999999999999864 46778887777766665 68999
Q ss_pred cCCCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCC-CHHHHHHHHHHH
Q 015289 119 KESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIV-SPAEAAELASKY 197 (409)
Q Consensus 119 ~g~~~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~-~~~~~~~~~~~~ 197 (409)
+|+++.+++.+++.+.. ++|+ +.|++||||||||+.||..|+|+|+||||.++++|+|.+++.. +++++.++++++
T Consensus 96 ~G~d~~~~~~l~~~l~~-~~g~--~~a~~aid~AlwDl~gk~~g~Pl~~lLGg~~~~v~~~~~~g~~~~~e~~~~~a~~~ 172 (393)
T 1wuf_A 96 AQRKIRKPEEIQELFSW-IQGN--EMAKAAVELAVWDAFAKMEKRSLAKMIGATKESIKVGVSIGLQQNVETLLQLVNQY 172 (393)
T ss_dssp HHCEESSTTHHHHHHTT-SCSC--HHHHHHHHHHHHHHHHHHTTSBHHHHTTCCCSEEEBCEEECCCSCHHHHHHHHHHH
T ss_pred cCCCccCHHHHHHHHHH-ccCc--hHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCcceeeEEeCCCCCHHHHHHHHHHH
Confidence 99999999999988865 4554 4689999999999999999999999999987899999998865 599999999999
Q ss_pred HHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHh
Q 015289 198 RKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 277 (409)
Q Consensus 198 ~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l 277 (409)
+++||+++|+|+|. ++|++++++||++.|++.|++|+|++|+.++| ++++.|+++++ .|||||++++|++++++|
T Consensus 173 ~~~G~~~~KiKvg~--~~d~~~v~avr~a~~~~~l~vDaN~~~~~~~a-~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l 247 (393)
T 1wuf_A 173 VDQGYERVKLKIAP--NKDIQFVEAVRKSFPKLSLMADANSAYNREDF-LLLKELDQYDL--EMIEQPFGTKDFVDHAWL 247 (393)
T ss_dssp HHHTCCEEEEECBT--TBSHHHHHHHHTTCTTSEEEEECTTCCCGGGH-HHHHTTGGGTC--SEEECCSCSSCSHHHHHH
T ss_pred HHHhhHhheeccCh--HHHHHHHHHHHHHcCCCEEEEECCCCCCHHHH-HHHHHHHhCCC--eEEECCCCCcCHHHHHHH
Confidence 99999999999984 68999999999988899999999999999999 99999999987 499999999999999998
Q ss_pred HHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHH
Q 015289 278 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 356 (409)
Q Consensus 278 ~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~h 356 (409)
++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||+++.++++|
T Consensus 248 ~~----~~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~h 323 (393)
T 1wuf_A 248 QK----QLKTRICLDENIRSVKDVEQAHSIGSCRAINLKLARVGGMSSALKIAEYCALNEILVWCGGMLEAGVGRAHNIA 323 (393)
T ss_dssp HT----TCSSEEEECTTCCSHHHHHHHHHHTCCSEEEECTGGGTSHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHH
T ss_pred HH----hCCCCEEECCCcCCHHHHHHHHHhCCCCEEEeChhhhCCHHHHHHHHHHHHHcCCeEEecCCcccHHHHHHHHH
Confidence 74 67899999999999999999999999999999999997 99999999999999999999999999999999999
Q ss_pred HHccCCCCce-ecccccc-ccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 357 LSAGLGCFKF-IDLDTPL-LLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 357 laaa~~~~~~-~e~~~p~-~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
+| +++++.+ .+++.+. .+.+|++.++++++||++.+|++||||+++|++.+
T Consensus 324 la-a~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 376 (393)
T 1wuf_A 324 LA-ARNEFVFPGDISASNRFFAEDIVTPAFELNQGRLKVPTNEGIGVTLDLKVL 376 (393)
T ss_dssp HH-TSSSCCSCBSCCCGGGTBSSCSBSSCCCCCSSEEECCCSSBTSCCBCHHHH
T ss_pred HH-hCCCCCcccccCchhhhhhhhcccCCcEEECCEEECCCCCcCCCccCHHHH
Confidence 97 6888776 3555443 35678878888999999999999999999999865
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-70 Score=543.07 Aligned_cols=353 Identities=19% Similarity=0.306 Sum_probs=319.8
Q ss_pred eeEeEEEEEEEEecCcc-ceeeccc-eeeeeeEEEEEEEECCCceEEEEeccC-CccCcccHHHHHHHHHHHHHHHcCCC
Q 015289 46 VDVQRAENRPLNVPLIA-PFTIATS-RLDQVENVAIRIELSNGCVGWGEAPVL-PHVTAEDQQTAMVKASEACEVLKESP 122 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~-p~~~a~~-~~~~~~~~iVrl~td~G~~G~GE~~~~-~~~~~e~~~~~~~~~~~~~~~l~g~~ 122 (409)
|||++|+++++++|++. ||.++.+ +.+.++.++|+|+|++|.+||||+.+. +.|++++...+...+++++|.|+|++
T Consensus 4 MkI~~i~~~~~~~pl~~~p~~~s~~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~i~~l~~~l~g~d 83 (371)
T 2ps2_A 4 LKIARIDVFQVDLPYSGGVYYLSAGREYRSFDATIVRITTDTGIEGWGESTPFGSNYIASHPRGVRAGIATMAPSLIGLD 83 (371)
T ss_dssp CCEEEEEEEEEEECBTTSCCCCC-------EEEEEEEEEETTSCEEEEEECCSTTTSSSCCHHHHHHHHHHHHHHHTTSC
T ss_pred CEEEEEEEEEEecccCCCCeeecccceeccCceEEEEEEECCCCEEEEEEecCCcccCCCCHHHHHHHHHHHHHHHCCCC
Confidence 89999999999999999 9999877 578899999999999999999999876 77888887777667777899999999
Q ss_pred CCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHHcC
Q 015289 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQG 201 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~G 201 (409)
+.+++.+|+.+.+..+++ ..+++||||||||+.||.+|+|+|+||||. ++++|+|.+++..+++++.+.+++++++|
T Consensus 84 ~~~~~~~~~~l~~~~~~~--~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~vp~~~~~~~~~~~~~~~~a~~~~~~G 161 (371)
T 2ps2_A 84 PRRVDRINDAMDDALLGH--EDAKTAIDVACWDIFGKSVGLPVCELLGGRTNTRLPLISSIYVGEPEDMRARVAKYRAKG 161 (371)
T ss_dssp TTCHHHHHHHHHHHCSSC--HHHHHHHHHHHHHHHHHHHTCBHHHHTTCCCSSCEEBEEEECSCCHHHHHHHHHHHHTTT
T ss_pred cccHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHhC
Confidence 999999999998766554 468999999999999999999999999995 56999999998889999999999999999
Q ss_pred CCeEEEecCCChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHH-HhCCCCCceeecCCCCCCHHHHHHhHH
Q 015289 202 FTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKL-YEMGVTPVLFEQPVHRDDWEGLGHVSH 279 (409)
Q Consensus 202 f~~~KiKvG~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L-~~~~l~~~~iEeP~~~~d~~~~~~l~~ 279 (409)
|+.+|+|+|.+++.|++++++||++ ++++.|++|+|++|+.++|+++++.| ++++ + |||||++ |++++++|++
T Consensus 162 f~~iKik~g~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~--i-~iE~P~~--~~~~~~~l~~ 236 (371)
T 2ps2_A 162 YKGQSVKISGEPVTDAKRITAALANQQPDEFFIVDANGKLSVETALRLLRLLPHGLD--F-ALEAPCA--TWRECISLRR 236 (371)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHTTTCCTTCEEEEECTTBCCHHHHHHHHHHSCTTCC--C-EEECCBS--SHHHHHHHHT
T ss_pred hheEEeecCCCHHHHHHHHHHHHHhcCCCCEEEEECCCCcCHHHHHHHHHHHHhhcC--C-cCcCCcC--CHHHHHHHHh
Confidence 9999999999999999999999997 78999999999999999999999999 9997 4 9999998 8999999864
Q ss_pred HhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHH
Q 015289 280 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLS 358 (409)
Q Consensus 280 ~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hla 358 (409)
++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+++.++++|++
T Consensus 237 ----~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~hla 312 (371)
T 2ps2_A 237 ----KTDIPIIYDELATNEMSIVKILADDAAEGIDLKISKAGGLTRGRRQRDICLAAGYSVSVQETCGSDIAFAAIVHLA 312 (371)
T ss_dssp ----TCCSCEEESTTCCSHHHHHHHHHHTCCSEEEEEHHHHTSHHHHHHHHHHHHHHTCEEEEECSSCCHHHHHHHHHHH
T ss_pred ----hCCCCEEeCCCcCCHHHHHHHHHhCCCCEEEechhhcCCHHHHHHHHHHHHHcCCeEEecCCCcCHHHHHHHHHHH
Confidence 67899999999999999999999999999999999997 9999999999999999999999999999999999999
Q ss_pred ccCCCCc-eeccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCcC
Q 015289 359 AGLGCFK-FIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409 (409)
Q Consensus 359 aa~~~~~-~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~~ 409 (409)
++++|+. +.+++++.++.+|++.++++++||++.+|++||||+++|++.|+
T Consensus 313 a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~ 364 (371)
T 2ps2_A 313 QTIPERSLRCILECRDMVTVKTADGAFDIQDGFATAPTTPGLGIMPRLDVLG 364 (371)
T ss_dssp TTSCTTTEEEECCGGGGBSCCCEECCCCCBTTEECCCCSSBTSCEECHHHHC
T ss_pred HhCCCcccccccccchhhhccccCCCceEECCEEECCCCCCCCCeeCHHHHh
Confidence 9999876 35666665566788777888999999999999999999998764
|
| >4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-69 Score=547.71 Aligned_cols=344 Identities=18% Similarity=0.218 Sum_probs=302.3
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHcCCCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPAM 124 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~~ 124 (409)
|||++|+++.+++|+ | ++..++.++|||+||+|++||||+.+. .++.+... ..+++ +.|.|+|+++.
T Consensus 1 MkIt~i~~~~v~~pl--p------~~~~~~~~~V~v~td~G~~G~GE~~~~-~~~~~~~~---~~i~~~l~p~LiG~dp~ 68 (412)
T 4e4u_A 1 MKIVSLETHIVAVPP--P------HVGGMYWIFVKLKTDDGIEGVGEIYSA-TFGPKAMA---PIIDDVFERHLLNRDPH 68 (412)
T ss_dssp CCEEEEEEEEEECCT--T------CTTCSEEEEEEEEETTSCEEEEEECCC-SSCHHHHH---HHHHHHHHHHTTTSCTT
T ss_pred CEEEEEEEEEEccCC--C------ccCCCceEEEEEEECCCCEEEEeecCC-CCCHHHHH---HHHHHHhHHHhCCCChh
Confidence 899999999999998 4 223468999999999999999999643 23343332 23444 57999999999
Q ss_pred CHHHHHHHHHhhc---CCC-hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeec---------CCCHHHH
Q 015289 125 ALGSVFGVVAGLL---PGH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIP---------IVSPAEA 190 (409)
Q Consensus 125 ~~~~~~~~~~~~~---~g~-~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~---------~~~~~~~ 190 (409)
+++.+|+.+++.. ++. ....|+||||||||||+||.+|+|||+||||+ +++|++|.++. ..+++++
T Consensus 69 ~~e~~~~~l~~~~~~~~~~~~~~~A~said~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~yas~~~~~~~~~~~~~~~e~~ 148 (412)
T 4e4u_A 69 HVERLFRQAYSSGFTQRPDLTMMGVVSGLEMACWDIIGKAAAKPVYELLGGRIHERLRSYTYLYPKNAKGEYDYDDPDLA 148 (412)
T ss_dssp CHHHHHHHHHHTTTCCSCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGTTTCCCCSSEEEEEECCCBCTTSCBCSSCHHHH
T ss_pred HHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhHhHcCCcHHHHcCCCcCCeeEEEEeccCCcccccccCCCHHHH
Confidence 9999999997632 222 23569999999999999999999999999995 67899997653 4689999
Q ss_pred HHHHHHHHHcCCCeEEEecCCC-------------hhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCC
Q 015289 191 AELASKYRKQGFTTLKLKVGKN-------------LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMG 256 (409)
Q Consensus 191 ~~~~~~~~~~Gf~~~KiKvG~~-------------~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~ 256 (409)
++.+++++++||++||+|+|.+ +++|++++++||++ ++++.|++|+|++|+.++|+++++.|++++
T Consensus 149 ~~~a~~~~~~G~~~iKlK~g~~~~~~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~ 228 (412)
T 4e4u_A 149 AECAAENVKLGFTAVKFDPAGPYTAYSGHQLSLEVLDRCELFCRRVREAVGSKADLLFGTHGQMVPSSAIRLAKRLEKYD 228 (412)
T ss_dssp HHHHHHHHHHTCSEEEECCSCCCBTTCCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHcCCCEEEECCCCCCccccccccchhhHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcC
Confidence 9999999999999999999854 78999999999997 899999999999999999999999999998
Q ss_pred CCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHc
Q 015289 257 VTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRAS 335 (409)
Q Consensus 257 l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~ 335 (409)
+ .|||||++++|++++++|++ ++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++
T Consensus 229 i--~~iEeP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~kia~~A~~~ 302 (412)
T 4e4u_A 229 P--LWFEEPVPPGQEEAIAQVAK----HTSIPIATGERLTTKYEFHKLLQAGGASILQLNVARVGGLLEAKKIATLAEVH 302 (412)
T ss_dssp C--SEEECCSCSSCHHHHHHHHH----TCSSCEEECTTCCHHHHHHHHHHTTCCSEECCCTTTTTSHHHHHHHHHHHHHT
T ss_pred C--cEEECCCChhhHHHHHHHHh----hCCCCEEecCccCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHc
Confidence 7 49999999999999999875 68999999999999999999999999999999999997 99999999999999
Q ss_pred CCcEEEccCCchHHHHHHHHHHHccCCCCceecc-ccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 336 GLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDL-DTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 336 gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~-~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
|+++++|++ +|++++++++||++++||+.++|+ +....+.+|++.++++++||++.+|++||||+++|++.+
T Consensus 303 gi~v~~h~~-~s~i~~aa~~hlaaa~pn~~~~e~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGve~d~~~l 375 (412)
T 4e4u_A 303 YAQIAPHLY-NGPVGAAASIQLATCTPNFLIQESIMTWGGFHAEVVKTPIRWEDGYIIPSNEPGLGIELDMDVV 375 (412)
T ss_dssp TCEECCCCC-SCHHHHHHHHHHHHTCTTBCCEEESTTSCHHHHHTBSSCCEEETTEEECCCSSBTSCCBCHHHH
T ss_pred CCEEEecCC-CcHHHHHHHHHHHHhCCCceeeeecCccchhhHhhccCCCeeECCEEECCCCCCCCccCCHHHH
Confidence 999999986 799999999999999999988884 333334578888889999999999999999999999865
|
| >3vc5_A Mandelate racemase/muconate lactonizing protein; dehydratase, magnesium binding, enzyme function initiative, enolase, isomerase; 1.50A {Thermobispora bispora} PDB: 3vc6_A 4dhg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-70 Score=551.15 Aligned_cols=346 Identities=19% Similarity=0.275 Sum_probs=303.5
Q ss_pred eeeEeEEEEEEEEecCccceeeccceeee-eeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCC
Q 015289 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQ-VENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA 123 (409)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~p~~~a~~~~~~-~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~ 123 (409)
+|||++|+++++++| ..||.++.|.... .+.++|||+||+|++||||+.. .+.. ...++.+.|.|+|+++
T Consensus 22 ~mkI~~i~~~~v~~P-~~~~~~~~g~~~~~~~~~~V~v~td~G~~G~GE~~g-----~~~v---~~~i~~l~p~LiG~d~ 92 (441)
T 3vc5_A 22 SMLIREVRVTPVAFR-DPPLLNAAGVHQPWALRTIVEVVTDEGITGLGETYG-----DLAH---LEQVRAAAARLPGLDV 92 (441)
T ss_dssp -CBEEEEEEEEEEEE-CCCBEETTEECCSEEEEEEEEEEETTCCEEEEEEEC-----CHHH---HHHHHHHHHTCTTSBT
T ss_pred CcEEEEEEEEEEecC-CcccccccCccccceeEEEEEEEECCCCEEEEeCCC-----hHHH---HHHHHHHHHHhCCCCh
Confidence 699999999999999 8999999886543 5679999999999999999863 2222 2334668999999999
Q ss_pred CCHHHHHHHHHhhcCCC----------------hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeee----
Q 015289 124 MALGSVFGVVAGLLPGH----------------QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITI---- 182 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~g~----------------~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i---- 182 (409)
.+++.+|+.+++.+.++ ....|++|||+|||||+||.+|+|||+||||. +++||+|..+
T Consensus 93 ~~~e~i~~~l~~~~~~~~~~~~~g~~G~~~~~~~~~~A~sAID~ALwDl~gK~~g~Pv~~LLGG~~rd~v~~~a~~~~~~ 172 (441)
T 3vc5_A 93 YALHRIYRRVADVVGANIVTDMHGLTGSSSRVKTVDRVFAAFEVACLDIQGKAAGRPVADLLGGKVRDAVPYSAYLFYKW 172 (441)
T ss_dssp TCHHHHHHHHHHHHTTCCCCCSSCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSSSEEEBCEEEECBC
T ss_pred hHHHHHHHHHHHhhhccccccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeEEEEEeecccc
Confidence 99999999998753211 22368999999999999999999999999997 5789985432
Q ss_pred ------------cCCCHHHHHHHHHHHHH-cCCCeEEEecCC-ChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHH
Q 015289 183 ------------PIVSPAEAAELASKYRK-QGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEV 248 (409)
Q Consensus 183 ------------~~~~~~~~~~~~~~~~~-~Gf~~~KiKvG~-~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~ 248 (409)
+..++++++++++++++ +||++||+|+|. ++++|++++++||++.|++.|++|+|++|++++|+++
T Consensus 173 ~~~~g~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~~~~~Di~rv~avRea~pd~~L~vDaN~~w~~~~Ai~~ 252 (441)
T 3vc5_A 173 AGHPGKPEDRFGPALDPDGIVAQARLLIGEYGFRSIKLKGGVFPPEQEAEAIQALRDAFPGLPLRLDPNAAWTVETSIRV 252 (441)
T ss_dssp SBCTTSCBCTTCCBCSHHHHHHHHHHHHHHHCCSSEEEECSSSCHHHHHHHHHHHHHHSTTCCEEEECTTCSCHHHHHHH
T ss_pred ccCCCccccccccCCCHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHHHHHHHhCCCCcEeccCCCCCCHHHHHHH
Confidence 12689999999999887 499999999995 8899999999999988999999999999999999999
Q ss_pred HHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHH
Q 015289 249 LEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALE 327 (409)
Q Consensus 249 ~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~ 327 (409)
+++|+++ + .|||||++ |++++++|++ ++++|||+||++++..+++++++.+++|++|+|++++| ++++++
T Consensus 253 ~~~L~~~-l--~~iEeP~~--~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~a~dii~~d~~~~GGitea~k 323 (441)
T 3vc5_A 253 GRALDGV-L--EYLEDPTP--GIDGMARVAA----EVPMPLATNMCVVTPEHLPAAVERRPIGVLLIDHHYWGGLVRSAH 323 (441)
T ss_dssp HHHTTTT-C--SEEECCSS--SHHHHHHHHT----TSSSCEEESSSCCSGGGHHHHHHHCCCSEEEECHHHHTSHHHHHH
T ss_pred HHHHHHH-H--HHhhccCC--CHHHHHHHHh----cCCCCEEeCCCCCCHHHHHHHHHhCCCCEEeechhhcCCHHHHHH
Confidence 9999998 7 49999995 7899999864 68999999999999999999999999999999999998 999999
Q ss_pred HHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCcee-ccccccccccCCC-CCCeeeeCcEEecCCCCCcccccCC
Q 015289 328 IIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI-DLDTPLLLSEDPV-LDGYEVSGAVYKFTNARGHGGFLHW 405 (409)
Q Consensus 328 i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~-e~~~p~~~~~d~~-~~~~~~~~G~i~~p~~PGlG~~~d~ 405 (409)
++++|+++|+++++|++.++++++++++||++++||+.+. +++.|+...+|++ .++++++||++.+|++||||+++|+
T Consensus 324 ia~lA~~~gv~v~~h~~~e~~i~~aa~~hlaaa~p~~~~~~d~~~~~~~~~d~~~~~~~~~~~G~i~~p~~PGLGveld~ 403 (441)
T 3vc5_A 324 IATLCATFGIELSMHSNSHLGISLAAMTHLAAATPAITHACDTHTPWQDGQDVVAPGALRFVDGAVPVPDGPGLGVELDR 403 (441)
T ss_dssp HHHHHHHTTCEEEECCCSCCHHHHHHHHHHHHTCTTBCSCBCCCGGGGTTCCSBCTTSCCCBTTEEECCCSSBTSCCBCH
T ss_pred HHHHHHHcCCEEEecCCcccHHHHHHHHHHHHhCCCcceeecccchhhcccccccCCCceEECCEEECCCCCCCCceECH
Confidence 9999999999999999999999999999999999998775 4555665545665 4578999999999999999999999
Q ss_pred CCc
Q 015289 406 DNI 408 (409)
Q Consensus 406 d~~ 408 (409)
|.|
T Consensus 404 ~~l 406 (441)
T 3vc5_A 404 DAL 406 (441)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-69 Score=539.71 Aligned_cols=354 Identities=18% Similarity=0.279 Sum_probs=320.6
Q ss_pred eeeeEeEEEEEEEEecCcc-ceeeccce-eeeeeEEEEEEEECCCceEEEEeccC-CccCcccHHHHHHHHHHHHHHHcC
Q 015289 44 FTVDVQRAENRPLNVPLIA-PFTIATSR-LDQVENVAIRIELSNGCVGWGEAPVL-PHVTAEDQQTAMVKASEACEVLKE 120 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~-p~~~a~~~-~~~~~~~iVrl~td~G~~G~GE~~~~-~~~~~e~~~~~~~~~~~~~~~l~g 120 (409)
|+|||++|+++++++|++. ||+++.++ .+.++.++|+|+|++|.+||||+.+. +.|++|+...+...++.++|.|+|
T Consensus 1 m~mkI~~i~~~~~~~pl~~~p~~~s~~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~i~~l~~~l~g 80 (379)
T 2rdx_A 1 MSLRITRIRLYKTDLPYVDGSYGWGAGNAITVARASVVVIDTDAGLQGCGEFTPCGENYMIAHSEGVDAFARLAAPQLLG 80 (379)
T ss_dssp -CCCEEEEEEEEEEEEBTTSCCEETTTEECSEEEEEEEEEEETTSCEEEEEEBCSSTTSSSCCTTHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEEEEEEeeecCCCCcEecCceeecccceEEEEEEECCCCEEEEEeecCCCCcCCCCHHHHHHHHHHHHHHHcC
Confidence 4699999999999999999 99999998 78899999999999999999999986 677777655555556678899999
Q ss_pred CCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHH
Q 015289 121 SPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRK 199 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~ 199 (409)
+++.+++.+|+.+...++| .+.+++||||||||+.||..|+|+|+||||. ++++|+|++++..+++++.+.++++++
T Consensus 81 ~d~~~~~~~~~~l~~~~~g--~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~v~~~~~~~~~~~~~~~~~a~~~~~ 158 (379)
T 2rdx_A 81 QDPRQVARMERLMDHLVQG--HGYAKAPFDAAFWDILGQATGQPVWMLLGGKLCDGAPMYRVAPQRSEAETRAELARHRA 158 (379)
T ss_dssp SCTTCHHHHHHHHHHHSSS--CHHHHHHHHHHHHHHHHHHHTCBHHHHTTSCCCSSEEBCEECCCSCSHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHhHHHhCCCHHHHcCCCCCCceeEEEEecCCCHHHHHHHHHHHHH
Confidence 9999999999998654555 3568999999999999999999999999996 579999999888899999999999999
Q ss_pred cCCCeEEEecCCChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhH
Q 015289 200 QGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 278 (409)
Q Consensus 200 ~Gf~~~KiKvG~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~ 278 (409)
+||+.+|+|+|.+++.|++++++||++ ++++.|++|+|++|+.++|+++++.|++++ + |||||++ |++++++|+
T Consensus 159 ~Gf~~iKik~g~~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~--i-~iE~P~~--~~~~~~~l~ 233 (379)
T 2rdx_A 159 AGYRQFQIKVGADWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLD--Y-ILEQPCR--SYEECQQVR 233 (379)
T ss_dssp TTCCEEEEECCSCHHHHHHHHHHHGGGSCTTCEEEEECTTCSCHHHHHHHHHHTTTSC--C-EEECCSS--SHHHHHHHH
T ss_pred cCCCEEEEeccCCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhCC--e-EEeCCcC--CHHHHHHHH
Confidence 999999999998899999999999998 789999999999999999999999999997 5 9999998 899999986
Q ss_pred HHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHH
Q 015289 279 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHL 357 (409)
Q Consensus 279 ~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hl 357 (409)
+ ++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||++++++++|+
T Consensus 234 ~----~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~~a~~~l 309 (379)
T 2rdx_A 234 R----VADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNLGGLSKARRTRDFLIDNRMPVVAEDSWGGEIASAAVAHF 309 (379)
T ss_dssp T----TCCSCEEECTTCCSHHHHHHHHHHTCCSEEEEETTTTTSHHHHHHHHHHHHHTTCCEEEECSBCSHHHHHHHHHH
T ss_pred h----hCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCeEEEeeccCcHHHHHHHHHH
Confidence 4 67899999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred HccCCCCcee-ccc-cccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCcC
Q 015289 358 SAGLGCFKFI-DLD-TPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409 (409)
Q Consensus 358 aaa~~~~~~~-e~~-~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~~ 409 (409)
+++++|+.+. ..+ .| ++.+|++.++++++||++.+|++||||+++|++.++
T Consensus 310 aaa~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~ 362 (379)
T 2rdx_A 310 AASTPEEFLINSTDLMN-YNTRSTGLGGPTVHQGRLYASDTPGLGVTPDFNSLG 362 (379)
T ss_dssp HHTSCTTTEEEECCGGG-GBSSCSEEECCEEETTEEECCCSSBTSEEECHHHHC
T ss_pred HHcCCCccccccccccc-hhhhccccCCceEECCEEEcCCCCcCCeeeCHHHHh
Confidence 9999997554 122 44 336788877889999999999999999999998763
|
| >3vdg_A Probable glucarate dehydratase; enolase, magnesium binding site, lyase; 1.90A {Mycobacterium smegmatis str} PDB: 3vfc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-69 Score=549.74 Aligned_cols=348 Identities=19% Similarity=0.286 Sum_probs=303.9
Q ss_pred cceeeeEeEEEEEEEEecCccceeeccceeee-eeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcC
Q 015289 42 QTFTVDVQRAENRPLNVPLIAPFTIATSRLDQ-VENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKE 120 (409)
Q Consensus 42 ~~~~mkI~~i~~~~~~~pl~~p~~~a~~~~~~-~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g 120 (409)
..+.|||++|+++++++| ..|+.++.|.... .+.++|||+||+|++||||+.. .+... ..++.+.|.|+|
T Consensus 24 ~~~~mkIt~i~~~~v~~p-~~p~~~~~g~~~~~~~~~~V~v~td~G~~G~GE~~g-----~~~~~---~~i~~l~p~LiG 94 (445)
T 3vdg_A 24 AHNRIRITGARVTPVAFA-DPPLLNTVGVHQPYALRAVIQLDTDAGLTGLGETYA-----DTVHL---ERLQAAAHAIVG 94 (445)
T ss_dssp GGGCCBEEEEEEEEEEEE-CCCBEETTEECCSEEEEEEEEEEETTSCEEEEEECC-----CHHHH---HHHHHHHHHHTT
T ss_pred CCCCCEEEEEEEEEEecC-CccccccccccccceeEEEEEEEECCCCeEEEeCCC-----hHHHH---HHHHHHHHHhCC
Confidence 335699999999999999 8999998876543 5779999999999999999853 23222 234668999999
Q ss_pred CCCCCHHHHHHHHHhhcCCC----------------hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeee-
Q 015289 121 SPAMALGSVFGVVAGLLPGH----------------QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITI- 182 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~g~----------------~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i- 182 (409)
+++.+++.+|+.+++.+.++ ....|++|||+|||||+||.+|+|||+||||. +++||+|.++
T Consensus 95 ~d~~~ie~i~~~l~~~~~~~~~~~~~g~~G~~~~~~~~~~A~sAiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~~a~~~ 174 (445)
T 3vdg_A 95 RSVFSTNVIRALISDALGGDRTGDGSGLAGMITSASVVDRVFSPFEVACLDVQGQVTGRPVSDLLGGAVRDAVPFSAYLF 174 (445)
T ss_dssp CBTTCHHHHHHHHHHHHTSCCCSCCTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHTCBGGGGTTCCSSSEEEBCEEEE
T ss_pred CChhhHHHHHHHHHHhhhcccccccccccCccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeEEEeeeec
Confidence 99999999999998763211 22368999999999999999999999999997 5789986433
Q ss_pred ---------------cCCCHHHHHHHHHHHHHc-CCCeEEEecCC-ChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHH
Q 015289 183 ---------------PIVSPAEAAELASKYRKQ-GFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEA 245 (409)
Q Consensus 183 ---------------~~~~~~~~~~~~~~~~~~-Gf~~~KiKvG~-~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A 245 (409)
+..+++++++++++++++ ||++||+|+|. ++++|++++++||++.|++.|++|+|++|++++|
T Consensus 175 ~~~~~~~g~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~~~~~Di~~v~avRea~~d~~L~vDaN~~w~~~~A 254 (445)
T 3vdg_A 175 YKWAAHPGAEPDGWGAALDPDGIVAQARRMIDEYGFSAIKLKGGVFAPEEEMAAVEALRAAFPDHPLRLDPNAAWTPQTS 254 (445)
T ss_dssp CBCSSSTTSCCCSSCCBCSHHHHHHHHHHHHHHHCCSSEEEECSSSCHHHHHHHHHHHHHHCTTSCEEEECTTCSCHHHH
T ss_pred ccccccCCccccccccCCCHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHH
Confidence 126899999999999875 99999999995 8899999999999988999999999999999999
Q ss_pred HHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHH
Q 015289 246 VEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLG 324 (409)
Q Consensus 246 ~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~ 324 (409)
+++++.|+++ + .|||||++ |++++++|++ ++++|||+||++++..+++++++.+++|++|+|++++| +++
T Consensus 255 i~~~~~L~~~-l--~~iEeP~~--~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~a~div~~d~~~~GGite 325 (445)
T 3vdg_A 255 VKVAAGLEGV-L--EYLEDPTP--GLDGMAEVAA----QAPMPLATNMCVVAFDQLPAAVAKNSVQVVLSDHHYWGGLQR 325 (445)
T ss_dssp HHHHHHTTTT-C--SEEECCSS--SHHHHHHHHH----HCSSCEEESSSCCSGGGHHHHHHHTCCSEEEECHHHHTSHHH
T ss_pred HHHHHHHhhH-H--HeeeCCCC--CHHHHHHHHh----cCCCCEEcCCcCCCHHHHHHHHHcCCCCEEeeCcceeCCHHH
Confidence 9999999998 7 49999995 7999999875 68899999999999999999999999999999999998 999
Q ss_pred HHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCcee-ccccccccccCCC-CCCeeeeCcEEecCCCCCcccc
Q 015289 325 ALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI-DLDTPLLLSEDPV-LDGYEVSGAVYKFTNARGHGGF 402 (409)
Q Consensus 325 ~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~-e~~~p~~~~~d~~-~~~~~~~~G~i~~p~~PGlG~~ 402 (409)
+++++++|+++|+++++|++.+++++.++++||++++||+.+. +...|+.. +|.+ .++++++||++.+|++||||++
T Consensus 326 a~kia~lA~~~gv~v~~h~~~e~~i~~aa~~hlaaa~p~~~~~~d~~~~~~~-~d~~~~~~~~~~~G~i~~p~~PGLGve 404 (445)
T 3vdg_A 326 SRLLAGICDTFGLGLSMHSNSHLGISLAAMVHLAAATPNLTYACDTHWPWRH-EDVVAPGALNFCDGEVQVPATPGLGVE 404 (445)
T ss_dssp HHHHHHHHHHHTCEEEECCCSCCHHHHHHHHHHHHTCTTCCSCBCCCGGGCC-CCSBCSSSSCEETTEEECCCSSBTSCC
T ss_pred HHHHHHHHHHcCCEEEEeCCcchHHHHHHHHHHHHhCCCcceeeccccchhh-cccccCCCceEECCEEECCCCCcCCCc
Confidence 9999999999999999999999999999999999999998774 44446544 4554 4678999999999999999999
Q ss_pred cCCCCc
Q 015289 403 LHWDNI 408 (409)
Q Consensus 403 ~d~d~~ 408 (409)
+|+|.|
T Consensus 405 ld~~~l 410 (445)
T 3vdg_A 405 IDEDAL 410 (445)
T ss_dssp BCHHHH
T ss_pred CCHHHH
Confidence 999875
|
| >4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-69 Score=547.10 Aligned_cols=345 Identities=17% Similarity=0.193 Sum_probs=301.7
Q ss_pred eeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHcCCCC
Q 015289 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPA 123 (409)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~ 123 (409)
+|||++|+++.+++|+ | ++..++.++|||+||+|++||||+.+. .++.+... ..+++ +.|.|+|+++
T Consensus 1 ~MkIt~i~~~~v~~pl--p------~~~~~~~~~V~v~td~G~~G~GE~~~~-~~~~~~~~---~~i~~~l~p~liG~dp 68 (404)
T 4e5t_A 1 SMRLSDIETFVVGNPP--P------RHGGRYFIFVKLVTACGITGYGEIYNA-TFGPDLVA---KMAEDVFARQFAGEDP 68 (404)
T ss_dssp -CCEEEEEEEEEECCT--T------CTTCSEEEEEEEEETTSCEEEEEECCC-SSCHHHHH---HHHHHHHHHHTTTSCT
T ss_pred CCEEEEEEEEEeccCC--c------ccCCCceEEEEEEECCCCEEEEeeccC-CCchHHHH---HHHHHHHHHHhcCCCh
Confidence 4999999999999998 4 223468999999999999999999642 23333332 23443 5799999999
Q ss_pred CCHHHHHHHHHhhc---CCCh-hhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeec---------------
Q 015289 124 MALGSVFGVVAGLL---PGHQ-FASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIP--------------- 183 (409)
Q Consensus 124 ~~~~~~~~~~~~~~---~g~~-~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~--------------- 183 (409)
.+++.+|+.+++.. ++.. ...|+||||||||||+||.+|+|||+||||+ +++|++|.+++
T Consensus 69 ~~~e~~~~~~~~~~~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~~~~p~~d~~~~ 148 (404)
T 4e5t_A 69 HHIEKLWHKTYGAGYTQRPDVTVMGVLSGLEMACWDIIGKAAGKPAYELLGGKVHERLRSYTYLYPTDGDVYPDPDKPNV 148 (404)
T ss_dssp TCHHHHHHHHHTTTSCCSCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGTTTCCCCSSEEEEEECCC----------CCCT
T ss_pred hHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHhhhHcCCcHHHHcCCCCcCeEEEEEEecccccccccccccccc
Confidence 99999999997632 2222 3568999999999999999999999999995 67899997653
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEecCCC-------------hhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHH
Q 015289 184 IVSPAEAAELASKYRKQGFTTLKLKVGKN-------------LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVL 249 (409)
Q Consensus 184 ~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~-------------~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~ 249 (409)
..+++++++++++++++||++||+|+|.+ +++|++++++||++ ++++.|++|+|++|+.++|++++
T Consensus 149 ~~~~e~~~~~a~~~~~~G~~~~KlK~g~~~~~~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~A~~~~ 228 (404)
T 4e5t_A 149 YNDADMAAEAAAKAVDQGFTAVKFDPAGAYTIYDGHQPSLEDLERSEAFCKQIRAAVGTKADLLFGTHGQFTVSGAKRLA 228 (404)
T ss_dssp TTCHHHHHHHHHHHHHHTCSEEEECCSCCCBTTCSBCCCHHHHHHHHHHHHHHHHHHGGGSEEEECCCSCBCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEeeCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCCeEEEeCCCCcCHHHHHHHH
Confidence 45899999999999999999999999854 78999999999998 79999999999999999999999
Q ss_pred HHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHH
Q 015289 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEI 328 (409)
Q Consensus 250 ~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i 328 (409)
+.|+++++ .|||||++++|++++++|++ ++++||++||+++++++++++++.+++|++|+|++++| +++++++
T Consensus 229 ~~l~~~~i--~~iEeP~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~i 302 (404)
T 4e5t_A 229 RRLEAYDP--LWFEEPIPPEKPEDMAEVAR----YTSIPVATGERLCTKYEFSRVLETGAASILQMNLGRVGGLLEAKKI 302 (404)
T ss_dssp HHHGGGCC--SEEECCSCTTCHHHHHHHHH----HCSSCEEECTTCCHHHHHHHHHHHTCCSEECCCTTTSSCHHHHHHH
T ss_pred HHHhhcCC--cEEECCCCcccHHHHHHHHh----hCCCCEEeCCCcCCHHHHHHHHHhCCCCEEecCccccCCHHHHHHH
Confidence 99999987 49999999999999999875 67999999999999999999999999999999999997 9999999
Q ss_pred HHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceeccc-cccccccCCCCCCeeeeCcEEecCCCCCcccccCCCC
Q 015289 329 IEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLD-TPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDN 407 (409)
Q Consensus 329 ~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~-~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~ 407 (409)
+++|+++|+++++|++ +|++++++++||++++||+.++|+. ....+.+|++.++++++||++.+|++||||+++|++.
T Consensus 303 a~~A~~~gi~~~~h~~-~s~i~~aa~~hlaaa~p~~~~~e~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~ 381 (404)
T 4e5t_A 303 AAMAECHSAQIAPHLY-CGPLVALANIQLATCSPNFLVLESIRTFDGFFAELLTTPIRWENGYIIPSQEPGLGHDLNEDV 381 (404)
T ss_dssp HHHHHHTTCEECCCCS-SCHHHHHHHHHHHHTCTTBCCEEESTTSCTHHHHTBSSCCEEETTEEECCCSSBTSSCBCHHH
T ss_pred HHHHHHcCCEEeecCC-CcHHHHHHHHHHHHhCCCceeEEecccccchhHHhcCCCCeeeCCEEECCCCCCCCcCCCHHH
Confidence 9999999999999987 7999999999999999999888843 3233456888888999999999999999999999986
Q ss_pred c
Q 015289 408 I 408 (409)
Q Consensus 408 ~ 408 (409)
+
T Consensus 382 ~ 382 (404)
T 4e5t_A 382 A 382 (404)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >4h1z_A Enolase Q92ZS5; dehydratase, magnesium binding site, enzyme function initiat isomerase; 2.01A {Sinorhizobium meliloti} PDB: 2ppg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-70 Score=552.37 Aligned_cols=354 Identities=19% Similarity=0.295 Sum_probs=299.9
Q ss_pred eeeeEeEEEEEEEEecCccceeecccee-------------------eeeeEEEEEEEECCCceEEEEeccCCccCcccH
Q 015289 44 FTVDVQRAENRPLNVPLIAPFTIATSRL-------------------DQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQ 104 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p~~~a~~~~-------------------~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~ 104 (409)
|+.||++|+++.+.+|++.|+..+.+.. ....+++|||+||+|++||||+.+.. +++..
T Consensus 24 ~~~~I~~i~~~~v~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~r~VlVri~td~G~~G~GE~~~~~--~~~~~ 101 (412)
T 4h1z_A 24 MSDRVKKIESFTLTLPRETPYLGKPRPGEEPNGRGYLVRKANRTVYPTFDRSVLVRIETENGAVGWGETYGLV--APRAT 101 (412)
T ss_dssp -CCCEEEEEEEEEECC------------CCCCTTSEEECTTTCCEEESSCEEEEEEEEETTCCEEEEEEECSS--CHHHH
T ss_pred ccceeeEEEEEEEecccCCccccccccccccccccceeeccCcccCCCCCCcEEEEEEECCCCEEEEecCCCC--CHHHH
Confidence 4569999999999999999986432211 11346999999999999999997532 22222
Q ss_pred HHHHHHHHH-HHHHHcCCCCCCHHHHHHHHHhhcC-----CChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCC-Ceee
Q 015289 105 QTAMVKASE-ACEVLKESPAMALGSVFGVVAGLLP-----GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVS-NTIT 177 (409)
Q Consensus 105 ~~~~~~~~~-~~~~l~g~~~~~~~~~~~~~~~~~~-----g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~-~~i~ 177 (409)
...+++ +.|+|+|++|.+++.+|+.+++... +.....|+|||||||||++||.+|+|||+||||.. ++++
T Consensus 102 ---~~~i~~~lap~liG~dp~~~~~i~~~l~~~~~~~~~~~g~~~~A~saiD~ALwDl~gK~~g~Pl~~LLGG~~~~~v~ 178 (412)
T 4h1z_A 102 ---MEIIDDLLADFTIGRDPFDAAAIHDDLYDLMRVRGYTGGFYVDALAAIDIALWDLAGKLAGLPVCKLLGGQRRDRIA 178 (412)
T ss_dssp ---HHHHHHTHHHHHTTSCGGGHHHHHHHHHTTTGGGTCCSHHHHHHHHHHHHHHHHHHHHHHTCBGGGGTTCCCCSEEE
T ss_pred ---HHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHcCCCHHHhcCCCCCceEE
Confidence 223343 6899999999999999999976432 22235689999999999999999999999999985 5899
Q ss_pred eeee-ecCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhC
Q 015289 178 TDIT-IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEM 255 (409)
Q Consensus 178 ~~~~-i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~ 255 (409)
+|.+ ++..+++++.+.+++++++||+++|+|+|.+.+.|+++++++|++ +|++.|++|+|++|++++|+++++.|+++
T Consensus 179 ~y~s~~~~~~~~~~~~~a~~~~~~G~~~~K~k~g~~~~~~~~~v~~vR~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~ 258 (412)
T 4h1z_A 179 AYISGLPEDTRAKRAELAAAWQAKGFSSFKFASPVADDGVAKEMEILRERLGPAVRIACDMHWAHTASEAVALIKAMEPH 258 (412)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHTTCCEEEEEGGGCTTCHHHHHHHHHHHHCSSSEEEEECCSCCCHHHHHHHHHHHGGG
T ss_pred EEeccCCCCcHHHHHHHHHHHHhcCcceeccccccchhhHHHHHHHHHhccCCeEEEEeccccCCCHHHHHHHHHhhccc
Confidence 9977 445678889999999999999999999998888899999999997 89999999999999999999999999999
Q ss_pred CCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHc
Q 015289 256 GVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRAS 335 (409)
Q Consensus 256 ~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~ 335 (409)
++ .|||||++++|++++++|++ ++++|||+||++++..++.++++.+++|++|+|+++.|++++++++++|+++
T Consensus 259 ~l--~~iEqP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~div~~d~~~GGit~~~kia~~A~~~ 332 (412)
T 4h1z_A 259 GL--WFAEAPVRTEDIDGLARVAA----SVSTAIAVGEEWRTVHDMVPRVARRALAIVQPEMGHKGITQFMRIGAYAHVH 332 (412)
T ss_dssp CE--EEEECCSCTTCHHHHHHHHH----HCSSEEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHHHHHHHHHHHHHHHT
T ss_pred cc--ceecCCCCccchHHHHHHHh----hcCCccccCCcccchHhHHHHHHcCCCCEEEecCCCCChHHHHHHHHHHHHC
Confidence 86 59999999999999999975 6899999999999999999999999999999999863499999999999999
Q ss_pred CCcEEEccCCchHHHHHHHHHHHccCCCCceecccccc-ccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 336 GLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPL-LLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 336 gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~p~-~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
|+++++||++++++++++++|++++++|+.+.|+..+. ...++++.++++++||++.+|++||||+++|+|++
T Consensus 333 gi~v~~h~~~~~~i~~aa~lhl~aa~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~i~vp~~PGLGve~d~eal 406 (412)
T 4h1z_A 333 HIKVIPHATIGAGIFLAASLQASAALANVDCHEFQHSIFEPNRRLLVGDMDCLNGEYVVPTGPGLGVEPSKEAQ 406 (412)
T ss_dssp TCEECCCCCSSCSHHHHHHHHHHHHCTTBCCEEECHHHHTGGGGGEEECCEEETTEEECCCSSBTSEEECHHHH
T ss_pred CCcEEecCCcchHHHHHHHHHHHHhCCCCCeeeccccccccchhhccCCCeEECCEEECCCCCCCCeEECHHHH
Confidence 99999999999999999999999999999998876543 34567778889999999999999999999999865
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-69 Score=531.15 Aligned_cols=342 Identities=34% Similarity=0.510 Sum_probs=318.6
Q ss_pred eeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCC
Q 015289 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAM 124 (409)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~ 124 (409)
+|||++|+++++++|++.||+++.++.+.++.++|||+|++|.+||||+.+.+.+++|+...+...++++.|.|+|+++.
T Consensus 1 MmkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~i~~l~~~l~g~d~~ 80 (345)
T 2zad_A 1 MSRIVNVKLSLKRYEYEKPFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVREMITGIDVR 80 (345)
T ss_dssp -CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCCHHHHCCCHHHHHHTHHHHHHHHTTCBGG
T ss_pred CCEEEEEEEEEEEeeccCCEEecCeeEeeceEEEEEEEECCCCEEEEEecCCCCcCCCCHHHHHHHHHHHHHHhCCCChh
Confidence 38999999999999999999999999999999999999999999999998876677777777766677789999999999
Q ss_pred CHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHcCCCe
Q 015289 125 ALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTT 204 (409)
Q Consensus 125 ~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~ 204 (409)
+++.+|+.+ +.++++ +.+++|||+||||+.||..|+|+|+||||.++++|+|.+++..+++++.+.+++++++||++
T Consensus 81 ~~~~~~~~l-~~~~~~--~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~v~~~~~~~~~~~~~~~~~a~~~~~~Gf~~ 157 (345)
T 2zad_A 81 NYARIFEIT-DRLFGF--PSLKAAVQFATLDALSQELGTQVCYLLGGKRDEIETDKTVGIDTVENRVKEAKKIFEEGFRV 157 (345)
T ss_dssp GHHHHHHHH-TTCTTS--HHHHHHHHHHHHHHHHHHHTSCHHHHTTCCCSEEEBCEEECSCCHHHHHHHHHHHHHTTCSE
T ss_pred hHHHHHHHH-HHhccc--hHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceeeeEEecCCCHHHHHHHHHHHHHcCcCE
Confidence 999999988 444333 56899999999999999999999999999778999999998889999999999999999999
Q ss_pred EEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCc--eeecCCCCCCHHHHHHhHHHhh
Q 015289 205 LKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPV--LFEQPVHRDDWEGLGHVSHIAK 282 (409)
Q Consensus 205 ~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~--~iEeP~~~~d~~~~~~l~~~~~ 282 (409)
+|+|+|.++++|++++++||++++++.|++|+|++|+.++|+++++.|+++++ . |||||++++|++++++|++
T Consensus 158 iKik~g~~~~~d~~~v~avr~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~~~iE~P~~~~~~~~~~~l~~--- 232 (345)
T 2zad_A 158 IKIKVGENLKEDIEAVEEIAKVTRGAKYIVDANMGYTQKEAVEFARAVYQKGI--DIAVYEQPVRREDIEGLKFVRF--- 232 (345)
T ss_dssp EEEECCSCHHHHHHHHHHHHHHSTTCEEEEECTTCSCHHHHHHHHHHHHHTTC--CCSEEECCSCTTCHHHHHHHHH---
T ss_pred EEEeecCCHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCC--CeeeeeCCCCcccHHHHHHHHH---
Confidence 99999998999999999999998899999999999999999999999999985 7 9999999999999999975
Q ss_pred ccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccC
Q 015289 283 DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGL 361 (409)
Q Consensus 283 ~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~ 361 (409)
++++||++||+++++++++++++.+++|++|+|+++ | ++++++++++|+++|+++++||+.||+++.++++|+++++
T Consensus 233 -~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~ik~~~-GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~hlaa~~ 310 (345)
T 2zad_A 233 -HSPFPVAADESARTKFDVMRLVKEEAVDYVNIKLMK-SGISDALAIVEIAESSGLKLMIGCMGESSLGINQSVHFALGT 310 (345)
T ss_dssp -HSSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHH-HHHHHHHHHHHHHHTTTCEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred -hCCCCEEEeCCcCCHHHHHHHHHhCCCCEEEEeccc-ccHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999999999 9 9999999999999999999999999999999999999999
Q ss_pred CCCceeccccccccccCCCCCCeeeeCcEEecCCC
Q 015289 362 GCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNA 396 (409)
Q Consensus 362 ~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~ 396 (409)
||+.++|+++|+.+.+|++.+++.++||++.+|++
T Consensus 311 ~~~~~~e~~~~~~~~~d~~~~~~~~~~G~~~~p~~ 345 (345)
T 2zad_A 311 GAFEFHDLDSHLMLKEEVFRGKFIQDGPRMRVKDQ 345 (345)
T ss_dssp CCCSEECCCGGGGBSSCCCCCSSEEETTEEECCCC
T ss_pred CCCceeecCCchhhhhccccCCcEEECCEEeCCCC
Confidence 99999999998777789988889999999999974
|
| >3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-69 Score=549.09 Aligned_cols=344 Identities=15% Similarity=0.227 Sum_probs=304.1
Q ss_pred eeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHcCCCC
Q 015289 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPA 123 (409)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~ 123 (409)
.|||++|+++.++.|+. + +..++.++|||+||+|++||||+.+.+. ..+.+ ...+++ +.|.|+|++|
T Consensus 1 mMkIt~i~~~~~~~p~~-----~---~~~~~~v~V~v~Td~G~~G~GE~~~~~~-~~~~v---~~~i~~~l~p~LiG~dp 68 (433)
T 3rcy_A 1 MVKLRDLDIIVTAPPAP-----G---WGGRYWILVKLTTDDGITGWGECYAASV-GPEAM---RAVIEDVFARHMEGENP 68 (433)
T ss_dssp -CCEEEEEEEEECCCTT-----C---TTCSCEEEEEEEETTSCEEEEEECCCSS-CHHHH---HHHHHHHHHHHTTTSCT
T ss_pred CCeEEEEEEEEEcCCCC-----c---cCCceEEEEEEEECCCCEEEEeccCCCC-CHHHH---HHHHHHHHHHHhCCCCc
Confidence 39999999999999983 2 2246899999999999999999876442 23332 233444 7899999999
Q ss_pred CCHHHHHHHHHhh--cC-CC-hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeee---c-------CCCHH
Q 015289 124 MALGSVFGVVAGL--LP-GH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITI---P-------IVSPA 188 (409)
Q Consensus 124 ~~~~~~~~~~~~~--~~-g~-~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i---~-------~~~~~ 188 (409)
.+++.+|+.+++. .+ |+ ....|+||||||||||+||.+|+|||+||||+ +++|++|.++ + ..+++
T Consensus 69 ~~ie~~~~~l~~~~~~~~g~~~~~~A~saID~ALWDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~g~~~~~~~~~~e 148 (433)
T 3rcy_A 69 ENIELMFRRVYSSGFTQRPDLTAIGAFSGLEIACWDILGKARGRPVWALLGGKMNPRIRAYTYLYPLPHHPITPFWTSAD 148 (433)
T ss_dssp TCHHHHHHHHHHTTTCCSCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGGTTCCSCSSEEEEEECCCCTTSCHHHHTTCHH
T ss_pred ccHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCeEEEEEEEcccCCcccccCCCCHH
Confidence 9999999999873 22 33 34679999999999999999999999999995 6789999865 2 26899
Q ss_pred HHHHHHHHHHHcCCCeEEEecCC-------------ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHh
Q 015289 189 EAAELASKYRKQGFTTLKLKVGK-------------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE 254 (409)
Q Consensus 189 ~~~~~~~~~~~~Gf~~~KiKvG~-------------~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~ 254 (409)
++++.+++++++||++||+|+|. +++.|++++++||++ ++++.|++|+|++|+.++|+++++.|++
T Consensus 149 ~~~~~a~~~~~~Gf~~iKlk~g~~~~~~~G~~~~~~~~~~d~e~v~avR~avG~d~~L~vDan~~~t~~~A~~~~~~Le~ 228 (433)
T 3rcy_A 149 MAAESAADCVARGYTAVKFDPAGPYTLRGGHMPAMTDISLSVEFCRKIRAAVGDKADLLFGTHGQFTTAGAIRLGQAIEP 228 (433)
T ss_dssp HHHHHHHHHHHTTCSEEEECCSCCCBTTCCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCcccccCCCcchhhHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHhhh
Confidence 99999999999999999999974 467899999999997 8999999999999999999999999999
Q ss_pred CCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHH
Q 015289 255 MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVR 333 (409)
Q Consensus 255 ~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~ 333 (409)
+++ .|||||++++|++++++|++ ++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+
T Consensus 229 ~~i--~~iEeP~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~g~~D~v~~d~~~~GGit~~~kia~lA~ 302 (433)
T 3rcy_A 229 YSP--LWYEEPVPPDNVGAMAQVAR----AVRIPVATGERLTTKAEFAPVLREGAAAILQPALGRAGGIWEMKKVAAMAE 302 (433)
T ss_dssp GCC--SEEECCSCTTCHHHHHHHHH----HSSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTHHHHHHHHHHHHH
T ss_pred cCC--CEEECCCChhhHHHHHHHHh----ccCCCEEecCCCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHH
Confidence 987 49999999999999999875 68899999999999999999999999999999999998 999999999999
Q ss_pred HcCCcEEEccCCchHHHHHHHHHHHccCCCCceeccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 334 ASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 334 ~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
++|+++++||+ +|+|++++++||++++||+.++|++.+ .+.++++.++++++||++.+|++||||+++|++.+
T Consensus 303 ~~gv~~~~h~~-~s~i~~aa~lhlaaa~pn~~~~E~~~~-~~~~~~~~~~~~~~~G~i~~p~~PGLGve~d~~~l 375 (433)
T 3rcy_A 303 VYNAQMAPHLY-AGPVEWAANVHFAASIPNILMCESIET-PFHDALIKGSIRVEGGYITPPEAPGLGIEVDEALA 375 (433)
T ss_dssp TTTCEECCCCS-SCHHHHHHHHHHHHTCTTBCCEECCCC-HHHHHHTTTCSCEETTEECCCCSSBTCCCCCHHHH
T ss_pred HcCCEEEecCC-CCHHHHHHHHHHHHHhccCcEEEeccc-hhhhhhcCCCceEECCEEEcCCCCcCCcccCHHHH
Confidence 99999999985 999999999999999999999998775 44567788889999999999999999999999865
|
| >3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-69 Score=543.41 Aligned_cols=341 Identities=15% Similarity=0.193 Sum_probs=301.4
Q ss_pred eeeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHcCCC
Q 015289 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESP 122 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (409)
+.|||++|+++.+.- + ..+.++|||+||+|++||||+.+. ++.+.. ...+++ +.|.|+|++
T Consensus 4 ~~mkIt~v~~~~~~~----------~---~~~~~~V~v~td~G~~G~GE~~~~--~~~~~~---~~~i~~~l~p~liG~d 65 (401)
T 3sbf_A 4 KETIISDIHCIITKP----------D---RHNLITVVVETNEGVTGFGCATFQ--QRPLAV---KTMVDEYLKPILIGKN 65 (401)
T ss_dssp -CCBEEEEEEEEECS----------S---SSCEEEEEEEETTSCEEEEECCCT--TSHHHH---HHHHHHTHHHHHTTSB
T ss_pred CCeEEEEEEEEEEcC----------C---CceEEEEEEEeCCCCEEEEccccC--CCHHHH---HHHHHHHHHHHHcCCC
Confidence 569999999987531 1 126899999999999999998753 233332 233455 889999999
Q ss_pred CCCHHHHHHHHHhhc--C-CChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHH
Q 015289 123 AMALGSVFGVVAGLL--P-GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYR 198 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~--~-g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~ 198 (409)
+.+++.+|+.+++.. + |.....|+||||||||||+||.+|+|||+||||. +++||+|.+++..+++++.+.+++++
T Consensus 66 ~~~~e~~~~~~~~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~e~~~~~a~~~~ 145 (401)
T 3sbf_A 66 ANNIEDLWQMMMVNAYWRNGPVINNAISGVDMALWDIKAKLAGMPLHQLFGGKSRDAIPVYTHATSDTMEGIYDLVEGFL 145 (401)
T ss_dssp TTCHHHHHHHHHHTTSSCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHTCCSSSSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHhHhHhCCcHHHHhCCCcCCeeeEEEeCCCCCHHHHHHHHHHHH
Confidence 999999999998642 2 2223578999999999999999999999999997 56899999888889999999999999
Q ss_pred HcCCCeEEEecCCC------------------------hhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 015289 199 KQGFTTLKLKVGKN------------------------LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLY 253 (409)
Q Consensus 199 ~~Gf~~~KiKvG~~------------------------~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~ 253 (409)
++||++||+|+|.+ ++.|++++++||++ ++++.|++|+|++|+.++|+++++.|+
T Consensus 146 ~~G~~~~K~KvG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~A~~~~~~L~ 225 (401)
T 3sbf_A 146 EKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQFHILHDVHERLFPNQAIQFAKEVE 225 (401)
T ss_dssp HTTCCEEEEEESCCCSCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHTTSSEEEEECTTCSCHHHHHHHHHHHG
T ss_pred HcCCCEEEEeeccCCcccccccccccccccccccchHHHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999843 57899999999998 899999999999999999999999999
Q ss_pred hCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHH
Q 015289 254 EMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVV 332 (409)
Q Consensus 254 ~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A 332 (409)
++++ .|||||++++|++++++|++ ++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|
T Consensus 226 ~~~i--~~iEqP~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~kia~~A 299 (401)
T 3sbf_A 226 QYKP--YFIEDILPPNQTEWLDNIRS----QSSVSLGLGELFNNPEEWKSLIANRRIDFIRCHVSQIGGITPALKLGHLC 299 (401)
T ss_dssp GGCC--SCEECSSCTTCGGGHHHHHT----TCCCCEEECTTCCSHHHHHHHHHTTCCSEECCCGGGGTSHHHHHHHHHHH
T ss_pred hcCC--CEEECCCChhHHHHHHHHHh----hCCCCEEeCCccCCHHHHHHHHhcCCCCEEecCccccCCHHHHHHHHHHH
Confidence 9987 49999999999999999864 78999999999999999999999999999999999997 99999999999
Q ss_pred HHcCCcEEEccCC-chHHHHHHHHHHHccCCCCceeccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 333 RASGLNLMIGGMV-ETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 333 ~~~gi~~~~~~~~-es~i~~~~~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
+++|+++++|++. +|++++++++||++++||+.++|++.+..+.+|++.++++++||++.+|++||||+++|++.+
T Consensus 300 ~~~gi~~~~h~~~~~s~i~~aA~~hlaaa~p~~~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l 376 (401)
T 3sbf_A 300 QNFGVRIAWHCAPDMTPIGAAVNTHLNVHLHNAAIQEHVEYNGNTHKVFPNAAEPINGYLYASEIAGIGVEIDREAA 376 (401)
T ss_dssp HHHTCEECCCCCTTSCHHHHHHHHHHHHHSTTBCCEECCCCCHHHHHHSTTCCCCBTTEECCCCSSBSSCCCCHHHH
T ss_pred HHcCCEEEecCCcccchHHHHHHHHHHHhCCCcceeeccCCchhhHhhcCCCCeeeCCEEECCCCCCCCceECHHHH
Confidence 9999999999996 799999999999999999999998765445677888888999999999999999999999865
|
| >3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-69 Score=543.70 Aligned_cols=347 Identities=17% Similarity=0.210 Sum_probs=299.2
Q ss_pred cceeeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHH------HHHHH
Q 015289 42 QTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVK------ASEAC 115 (409)
Q Consensus 42 ~~~~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~------~~~~~ 115 (409)
+...|||++|+++.+++|+ +...++.++|||+||+|++||||+.+.+ +.....+.. ++.+.
T Consensus 6 ~~~~mkI~~i~~~~v~~p~---------~~~~~~~~~V~v~td~G~~G~GE~~~~~----~~~~~~~~~~~~~~~~~~l~ 72 (394)
T 3mkc_A 6 NPAVAPIKSIEFIPVNYQA---------SNWSQNTVVVKVTDENGVYGLGEADGSP----DAILAYANIETEHKWLTNIT 72 (394)
T ss_dssp CTTCCCEEEEEEEEEEEC-------------CEEEEEEEEEETTSCEEEEEECSCH----HHHHHHHTCCCCBTTBCCTT
T ss_pred CCCCCeEEEEEEEEEecCC---------CCCCccEEEEEEEECCCCeEEEEecCcH----HHHHHHHhcccchhhHHHHH
Confidence 3466999999999999997 2335689999999999999999997532 111111110 11267
Q ss_pred HHHcCCCCCCHHHHHHHHHhhc----CCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCC-Ceeeeeeeec--C-C--
Q 015289 116 EVLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVS-NTITTDITIP--I-V-- 185 (409)
Q Consensus 116 ~~l~g~~~~~~~~~~~~~~~~~----~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~-~~i~~~~~i~--~-~-- 185 (409)
|.|+|++|.+++.+|+.+++.. ++.....|+|||||||||++||.+|+|||+||||.. +++++|.+++ . .
T Consensus 73 p~liG~dp~~~e~~~~~l~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~s~~~~~~~~~ 152 (394)
T 3mkc_A 73 EKAIGRLPIEINAIWDAMYDATQWQGMRGLGMFALSGIDMALYDLAGKQLGVPAYQLLGGTNKDKVHPYLTLYPAIPVDA 152 (394)
T ss_dssp TTTTTSCTTCHHHHHHHHHHHTHHHHSSTHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEECCEEECCCSCC-CC
T ss_pred HHhCCCChhHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHhHhHcCCcHHHHcCCCcCCeeEEEEecCCcCCCCc
Confidence 9999999999999999997642 122235689999999999999999999999999974 6899998876 2 2
Q ss_pred CHH----HHHHHHHHHHHcCCCeEEE-ecC---CChhHHHHHHHHHHhh-CCCcEEEEeCCCCC-CHHHHHHHHHHHHhC
Q 015289 186 SPA----EAAELASKYRKQGFTTLKL-KVG---KNLKEDIEVLRAIRAV-HPDSSFILDANEGY-KPQEAVEVLEKLYEM 255 (409)
Q Consensus 186 ~~~----~~~~~~~~~~~~Gf~~~Ki-KvG---~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w-~~~~A~~~~~~L~~~ 255 (409)
+++ ++.+++++++++||++||+ |+| .++++|++++++||++ ++++.|++|+|++| +.++|+++++.|+++
T Consensus 153 ~~~~~~~~~~~~a~~~~~~G~~~~K~~k~g~~~~~~~~d~e~v~avR~a~G~d~~l~vDaN~~~~~~~~A~~~~~~L~~~ 232 (394)
T 3mkc_A 153 SLDVAIKGYAPLLEKAKAHNIRAVKVCVPIKADWSTKEVAYYLRELRGILGHDTDMMVDYLYRFTDWYEVARLLNSIEDL 232 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSEEEEECCTTCCCCHHHHHHHHHHHHHHHCSSSEEEEECTTCCCCHHHHHHHHHHTGGG
T ss_pred chhhhHHHHHHHHHHHHHcCCCEEEeCccCCCccCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCCHHHHHHHHHHhhhc
Confidence 344 5667888999999999999 999 6799999999999997 89999999999999 999999999999999
Q ss_pred CCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHH
Q 015289 256 GVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRA 334 (409)
Q Consensus 256 ~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~ 334 (409)
++ .|||||++++|++++++|++ ++++||++||+++++.+++++++.+++|++|+|++++| ++++++++++|++
T Consensus 233 ~i--~~iEeP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~ia~~A~~ 306 (394)
T 3mkc_A 233 EL--YFAEATLQHDDLSGHAKLVE----NTRSRICGAEMSTTRFEAEEWITKGKVHLLQSDYNRCGGLTELRRITEMATA 306 (394)
T ss_dssp CC--SEEESCSCTTCHHHHHHHHH----HCSSCBEECTTCCHHHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHH
T ss_pred CC--eEEECCCCchhHHHHHHHHh----hCCCCEEeCCCCCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHH
Confidence 87 49999999999999999875 67899999999999999999999999999999999998 9999999999999
Q ss_pred cCCcEEEccCCchHHHHHHHHHHHccCCCCceecccccc----ccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 335 SGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPL----LLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 335 ~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~p~----~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
+|+++++||+ +|+++.++++||++++||+.++|++.+. .+.+|++.++++++||++.+|++||||+++|+|.|
T Consensus 307 ~gi~~~~h~~-~s~i~~aa~~hlaaa~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l 383 (394)
T 3mkc_A 307 NNVQVMPHNW-KTGITSAAAIHYQFAVGNAPYFEYVHPEFCDGELRKYLVTPEAELVDGGFAKPTAPGLGIDLNQEFL 383 (394)
T ss_dssp TTCEECCCCC-SCHHHHHHHHHHHHHTCCSSCCEECCGGGCCCHHHHHSEECCCCCBTTBEECCCSSBTCCEECHHHH
T ss_pred cCCEEeecCC-CcHHHHHHHHHHHHhCCCceeEEeeccccccchhHHhhccCCCcccCCEEECCCCCCCCceeCHHHH
Confidence 9999999998 9999999999999999999999988763 23466777788999999999999999999999876
|
| >3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-69 Score=544.28 Aligned_cols=345 Identities=18% Similarity=0.237 Sum_probs=296.9
Q ss_pred eeeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHH------HHHHHHH
Q 015289 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVK------ASEACEV 117 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~------~~~~~~~ 117 (409)
+.|||++|+++++++|+ +...++.++|||+||+|++||||+.+.+ +.....+.. ++.+.|.
T Consensus 3 ~~mkI~~i~~~~v~~p~---------~~~~~~~~~V~v~td~G~~G~GE~~~~~----~~~~~~~~~~~~~~~~~~l~p~ 69 (394)
T 3mqt_A 3 LGANIVSVEFIPVNVAA---------TNWSENTVIVKVTDENGVYGLGEADGPP----ECMKAFSEIENEHKWLNNIKEA 69 (394)
T ss_dssp --CCEEEEEEEEEECC--------------CEEEEEEEEETTSCEEEEEECSCH----HHHHHHHTCCCCBTTBCCGGGG
T ss_pred CCCeEeEEEEEEEecCC---------CCCCccEEEEEEEECCCCEEEEEECCcH----HHHHHHHhcccchhhHHHHHHH
Confidence 45999999999999997 2235689999999999999999997532 211111110 1127899
Q ss_pred HcCCCCCCHHHHHHHHHhhc--CC--ChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeec--C-C--CH
Q 015289 118 LKESPAMALGSVFGVVAGLL--PG--HQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIP--I-V--SP 187 (409)
Q Consensus 118 l~g~~~~~~~~~~~~~~~~~--~g--~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~--~-~--~~ 187 (409)
|+|++|.+++.+|+.+++.. .| .....|+|||||||||++||.+|+|||+||||. ++++++|.+++ . . ++
T Consensus 70 liG~dp~~~e~~~~~l~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~s~~~~~~~~~~~ 149 (394)
T 3mqt_A 70 VIGRDPLEFRANYNRMYDTTKWIGMRGLGLFAISGIDMALYDLAGKQLGVPAYKLMGGAQKAQLTPYFTLYPSVAADATL 149 (394)
T ss_dssp TTTSCTTCHHHHHHHHHHHTTTTCSSBHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCCSSSBCCEEECCCCCCTTCCH
T ss_pred hCCCChhHHHHHHHHHHHhhhhhCCccHHHHHHHHHHHHHHHHHHhHcCCcHHHHcCCCCCCeEEEEEEecCCCCCCcch
Confidence 99999999999999998742 22 223568999999999999999999999999997 46899998876 2 2 34
Q ss_pred H----HHHHHHHHHHHcCCCeEEE-ecC---CChhHHHHHHHHHHhh-CCCcEEEEeCCCCC-CHHHHHHHHHHHHhCCC
Q 015289 188 A----EAAELASKYRKQGFTTLKL-KVG---KNLKEDIEVLRAIRAV-HPDSSFILDANEGY-KPQEAVEVLEKLYEMGV 257 (409)
Q Consensus 188 ~----~~~~~~~~~~~~Gf~~~Ki-KvG---~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w-~~~~A~~~~~~L~~~~l 257 (409)
+ ++.+.+++++++||++||+ |+| .++++|++++++||++ ++++.|++|+|++| +.++|+++++.|+++++
T Consensus 150 ~~~i~~~~~~a~~~~~~G~~~~K~~k~g~~~~~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~~A~~~~~~L~~~~i 229 (394)
T 3mqt_A 150 SEIVEAYKPLIAKAKERGAKAVKVCIIPNDKVSDKEIVAYLRELREVIGWDMDMMVDCLYRWTDWQKARWTFRQLEDIDL 229 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEECCCCTTSCHHHHHHHHHHHHHHHCSSSEEEEECTTCCSCHHHHHHHHHHTGGGCC
T ss_pred hhhHHHHHHHHHHHHHcCCCEEEecccCCCccCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHHhhcCC
Confidence 4 5667888999999999999 999 6799999999999997 89999999999999 99999999999999987
Q ss_pred CCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcC
Q 015289 258 TPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASG 336 (409)
Q Consensus 258 ~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~g 336 (409)
. |||||++++|++++++|++ ++++||++||+++++.+++++++.+++|++|+|++++| ++++++++++|+++|
T Consensus 230 ~--~iEeP~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~g 303 (394)
T 3mqt_A 230 Y--FIEACLQHDDLIGHQKLAA----AINTRLCGAEMSTTRFEAQEWLEKTGISVVQSDYNRCGGVTELLRIMDICEHHN 303 (394)
T ss_dssp S--EEESCSCTTCHHHHHHHHH----HSSSEEEECTTCCHHHHHHHHHHHHCCSEECCCTTTSSCHHHHHHHHHHHHHHT
T ss_pred e--EEECCCCcccHHHHHHHHh----hCCCCEEeCCCcCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcC
Confidence 4 9999999999999999875 67899999999999999999999999999999999997 999999999999999
Q ss_pred CcEEEccCCchHHHHHHHHHHHccCCCCceecccccc----ccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 337 LNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPL----LLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 337 i~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~p~----~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
+++++||+ +|+++.++++||++++||+.++|++.+. .+.++++.++++++||++.+|++||||+++|++.+
T Consensus 304 i~~~~h~~-~s~i~~aa~~hlaaa~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 378 (394)
T 3mqt_A 304 AQLMPHNW-KTGITAAAARHFGIVCHISEYVEYLHPDFWNGTLTQQLTLNEPKIIDGAIEVSDKPGLGIELNIEFV 378 (394)
T ss_dssp CEECCCCC-SCHHHHHHHHHHHHHCTTCSCCEECCTTTCCCHHHHHTBSSCCCCBTTBBCCCCCSBTCCCBCHHHH
T ss_pred CEEeccCC-CchHHHHHHHHHHHhCCCCceEEecCcccccchhHHhhccCCCcccCCEEECCCCCCCCCCcCHHHH
Confidence 99999998 9999999999999999999999987652 23467778888999999999999999999999875
|
| >1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-69 Score=535.91 Aligned_cols=352 Identities=23% Similarity=0.312 Sum_probs=309.0
Q ss_pred ceeeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccC--CccCcccHHHHHHHHHH-HHHHHc
Q 015289 43 TFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLK 119 (409)
Q Consensus 43 ~~~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~ 119 (409)
+|.|||++|+++++++|++.||+++.++.+.++.++|||+| +|++||||+.+. +.|++|+++.+...+++ +.|.++
T Consensus 5 ~~~mkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~t-dG~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~~~l~ 83 (375)
T 1r0m_A 5 GRMFKIEAAEIVVARLPLKFRFETSFGVQTHKVVPLLILHG-EGVQGVAEGTMEARPMYREETIAGALDLLRGTFLPAIL 83 (375)
T ss_dssp -CCEECCEEEEEEEEEEBC----------CEEEEEEEEEEE-TTEEEEEECCCBSSSSSSSCBHHHHHHHHHHTHHHHHT
T ss_pred CcccEEEEEEEEEEeeecCCCeEecceEEeeccEEEEEEEE-CCeEEEEEEecCCCCcccCCCHHHHHHHHHHHHHHHHc
Confidence 35699999999999999999999999999999999999999 599999999864 56788887777666665 789999
Q ss_pred CCCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecC-CCHHHHHHHHHHHH
Q 015289 120 ESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI-VSPAEAAELASKYR 198 (409)
Q Consensus 120 g~~~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~-~~~~~~~~~~~~~~ 198 (409)
|+++.+++.+++.+. .+.|+ ..+++|||+||||+.||..|+|+|+||||.+++++++++++. .+++++.+.+++++
T Consensus 84 g~d~~~~~~l~~~~~-~~~g~--~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~~~~~~~g~~~~~~~~~~~a~~~~ 160 (375)
T 1r0m_A 84 GQTFANPEAVSDALG-SYRGN--RMARAMVEMAAWDLWARTLGVPLGTLLGGHKEQVEVGVSLGIQADEQATVDLVRRHV 160 (375)
T ss_dssp TCEESSHHHHHHTTT-TSCSC--HHHHHHHHHHHHHHHHHHHTCBHHHHHTCCCSEEEBCEEECCCSSHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHH-HccCc--hHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceeeeEEecCCCCHHHHHHHHHHHH
Confidence 999999988887663 34443 458999999999999999999999999998778888888877 48999999999999
Q ss_pred HcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhH
Q 015289 199 KQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 278 (409)
Q Consensus 199 ~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~ 278 (409)
++||+++|+|+++ +.|++++++||++.+++.|++|+|++|+.++ +++++.|+++++ .|||||++++|++++++|+
T Consensus 161 ~~G~~~iKik~~~--~~d~~~v~avr~a~~~~~l~vDan~~~~~~~-~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~ 235 (375)
T 1r0m_A 161 EQGYRRIKLKIKP--GWDVQPVRATREAFPDIRLTVDANSAYTLAD-AGRLRQLDEYDL--TYIEQPLAWDDLVDHAELA 235 (375)
T ss_dssp HTTCSCEEEECBT--TBSHHHHHHHHHHCTTSCEEEECTTCCCGGG-HHHHHTTGGGCC--SCEECCSCTTCSHHHHHHH
T ss_pred HhcccEEEEecCh--HHHHHHHHHHHHHcCCCeEEEeCCCCCCHHH-HHHHHHHHhCCC--cEEECCCCcccHHHHHHHH
Confidence 9999999999964 7899999999997789999999999999999 999999999987 4999999999999999997
Q ss_pred HHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHH
Q 015289 279 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHL 357 (409)
Q Consensus 279 ~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hl 357 (409)
+ ++++||++||++++.++++++++.+++|++|+|++++| ++++++++++|+++|++++++++++|+++.++++|+
T Consensus 236 ~----~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~hl 311 (375)
T 1r0m_A 236 R----RIRTPLCLDESVASASDARKALALGAGGVINLKVARVGGHAESRRVHDVAQSFGAPVWCGGMLESGIGRAHNIHL 311 (375)
T ss_dssp H----HCSSCEEESTTCCSHHHHHHHHHHTSCSEEEECTTTTTSHHHHHHHHHHHHHTTCCEEECCCCCCHHHHHHHHHH
T ss_pred H----hCCCCEEecCccCCHHHHHHHHHhCCCCEEEECcchhcCHHHHHHHHHHHHHcCCcEEecCccccHHHHHHHHHH
Confidence 5 57899999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred HccCCCCce-eccccc-cccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 358 SAGLGCFKF-IDLDTP-LLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 358 aaa~~~~~~-~e~~~p-~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
+ +++|+.+ +|++.+ ..+.+|++.+++.++||++.+|++||||+++|++.+
T Consensus 312 a-a~~~~~~~~e~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 363 (375)
T 1r0m_A 312 S-TLSNFRLPGDTSSASRYWERDLIQEPLEAVDGLMPVPQGPGTGVTLDREFL 363 (375)
T ss_dssp T-TSTTBCSCBSCCCGGGTBSSCSBSSCCCCBTTEEECCCSSBTSCCBCHHHH
T ss_pred H-cCCCCCcccccCCchhhhhhhcccCCceEECCEEECCCCCcCCCccCHHHH
Confidence 9 9999988 888765 245678888888999999999999999999999865
|
| >3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-68 Score=542.39 Aligned_cols=340 Identities=18% Similarity=0.230 Sum_probs=301.2
Q ss_pred eeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHcCCCC
Q 015289 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPA 123 (409)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~ 123 (409)
.|||++|+++.+. | .++.++|||+||+|++||||+.+.. ..+ .+...+++ +.|.|+|++|
T Consensus 22 ~mkIt~v~~~~~~-----~---------~~~~v~V~v~td~Gi~G~GE~~~~~--~~~---~~~~~i~~~l~p~LiG~dp 82 (424)
T 3v3w_A 22 SMKIVDAKVIVTC-----P---------GRNFVTLKIVTDQGIYGIGDATLNG--REK---SVVSYLEDYLIPVLIGRDP 82 (424)
T ss_dssp -CCEEEEEEEEEC-----S---------SSCEEEEEEEETTSCEEEEECCCTT--CHH---HHHHHHHHTHHHHHTTSCT
T ss_pred CCEEEEEEEEEEc-----C---------CCCEEEEEEEECCCCEEEEeccCCC--ChH---HHHHHHHHHHHHHhcCCCh
Confidence 3999999997753 1 1368999999999999999986532 222 22334555 8899999999
Q ss_pred CCHHHHHHHHHhhc--C-CChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHH
Q 015289 124 MALGSVFGVVAGLL--P-GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRK 199 (409)
Q Consensus 124 ~~~~~~~~~~~~~~--~-g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~ 199 (409)
.+++.+|+.+++.. + |.....|+||||||||||+||.+|+|||+||||+ +++||+|.+++..++++++++++++++
T Consensus 83 ~~ie~i~~~~~~~~~~~~g~~~~~A~sAiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~e~~~~~a~~~~~ 162 (424)
T 3v3w_A 83 QQIEDIWQFFYRGAYWRRGPVGMTALAAIDVALWDIKAKLANMPLYQLLGGKSRERILSYTHANGKDLDSTLEAVRKAKD 162 (424)
T ss_dssp TCHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHHTTSBHHHHHTCCSCSSEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCcCCCceeEEEeCCCCCHHHHHHHHHHHHH
Confidence 99999999998642 2 2223578999999999999999999999999997 568999998888899999999999999
Q ss_pred cCCCeEEEecCC---------------------------------ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHH
Q 015289 200 QGFTTLKLKVGK---------------------------------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEA 245 (409)
Q Consensus 200 ~Gf~~~KiKvG~---------------------------------~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A 245 (409)
+||+++|+|+|. +++.|++++++||++ ++++.|++|+|++|+.++|
T Consensus 163 ~Gf~~iKlKvG~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~d~~~~~~~d~e~v~avR~avG~d~~l~vDaN~~~~~~~A 242 (424)
T 3v3w_A 163 KGYKAIRVQCGIPGIAKTYGVSTNTKSYEPADADLPSVEVWSTEKYLNYIPDVFAAVRKEFGPDIHLLHDVHHRLTPIEA 242 (424)
T ss_dssp TTCSEEEEEECCTTCSCCTTCC-----CCSCCBSSCCEEEECHHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHH
T ss_pred cCCCEEEEeccCccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHH
Confidence 999999999984 157899999999998 8999999999999999999
Q ss_pred HHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHH
Q 015289 246 VEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLG 324 (409)
Q Consensus 246 ~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~ 324 (409)
+++++.|+++++ .|||||++++|++++++|++ ++++||++||+++++.+++++++.+++|++|+|++++| +++
T Consensus 243 ~~~~~~L~~~~i--~~iEqP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~ga~d~v~~k~~~~GGit~ 316 (424)
T 3v3w_A 243 ARLGKALEPYHL--FWMEDAVPAENQESFKLIRQ----HTTTPLAVGEVFNSIHDCRELIQNQWIDYIRTTIVHAGGISQ 316 (424)
T ss_dssp HHHHHHHGGGCC--SEEECCSCCSSTTHHHHHHH----HCCSCEEECTTCCSGGGTHHHHHTTCCSEECCCTTTTTHHHH
T ss_pred HHHHHHHHhcCC--CEEECCCChHhHHHHHHHHh----hCCCCEEEccCcCCHHHHHHHHHcCCCCeEeecchhcCCHHH
Confidence 999999999987 49999999999999999875 67899999999999999999999999999999999998 999
Q ss_pred HHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHHccCCCCceeccccccccccCCCCCCeeeeCcEEecCCCCCccccc
Q 015289 325 ALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFL 403 (409)
Q Consensus 325 ~~~i~~~A~~~gi~~~~~~~~-es~i~~~~~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~ 403 (409)
+++++++|+++|+++++||+. +|++++++++||++++||+.++|++.+..+.+|++.++++++||++.+|++||||+++
T Consensus 317 ~~~ia~~A~~~gi~~~~h~~~~~s~ig~aA~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGvel 396 (424)
T 3v3w_A 317 MRRIADFASLFHVRTGFHGATDLSPVCMGAALHFDYWVPNFGIQEHMAHSEQMNAVFPHAYTFNDGYFTPGEKPGHGVDI 396 (424)
T ss_dssp HHHHHHHHHTTTCEEEECCCTTSCHHHHHHHHHHHHHCTTEEEEECCCCCHHHHHHSCBCCEEETTEEECCSSSBTSBCC
T ss_pred HHHHHHHHHHcCCEEEecCCCcccHHHHHHHHHHHHhCCCcceEeecCcchhhHhhcCCCceeeCCEEECCCCCCCCccc
Confidence 999999999999999999997 7999999999999999999999987655556778888899999999999999999999
Q ss_pred CCCCcC
Q 015289 404 HWDNIA 409 (409)
Q Consensus 404 d~d~~~ 409 (409)
|++.|+
T Consensus 397 d~~~l~ 402 (424)
T 3v3w_A 397 DEKLAA 402 (424)
T ss_dssp CHHHHT
T ss_pred CHHHHH
Confidence 998764
|
| >3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-69 Score=544.27 Aligned_cols=350 Identities=18% Similarity=0.202 Sum_probs=301.9
Q ss_pred CcccccccccceeeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHH
Q 015289 33 TSFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS 112 (409)
Q Consensus 33 ~~~~~~~~~~~~~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~ 112 (409)
..|.|...+ +.|||++|+++.+. | + ..+.++|||+||+|++||||+.+. ++.+.+ ...++
T Consensus 16 ~~~~~~~~~--~~mkIt~v~~~~~~-----~-----~---~~~~v~V~v~td~Gi~G~GE~~~~--~~~~~~---~~~i~ 75 (422)
T 3tji_A 16 ENLYFQSMM--TPVIIKNIECFITR-----P-----D---RHNLVTVRVTTEQGITGHGCATFQ--QRPLAV---KTLVD 75 (422)
T ss_dssp --------C--CCCBEEEEEEEEEC-----S-----S---SSCEEEEEEEETTSCCEEEECCCT--TSHHHH---HHHHH
T ss_pred cceeccccC--CCcEEEEEEEEEEc-----C-----C---CccEEEEEEEECCCCEEEEeccCC--CCHHHH---HHHHH
Confidence 345554222 37999999998753 1 1 126899999999999999998753 233333 23345
Q ss_pred H-HHHHHcCCCCCCHHHHHHHHHhhc--CCC-hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCH
Q 015289 113 E-ACEVLKESPAMALGSVFGVVAGLL--PGH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSP 187 (409)
Q Consensus 113 ~-~~~~l~g~~~~~~~~~~~~~~~~~--~g~-~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~ 187 (409)
+ +.|.|+|+++.+++.+|+.+++.. ++. ....|+||||||||||+||.+|+|||+||||. +++||+|.+++..++
T Consensus 76 ~~l~p~LiG~dp~~ie~~~~~l~~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~ 155 (422)
T 3tji_A 76 EYLQPLMIGRDANNIEDLWQMMNVNAYWRNGPLMNNAISGVDMALWDIKGQLAGMPLYQLFGGKSRDAIPAYSHASGETL 155 (422)
T ss_dssp HTHHHHHTTSBTTCHHHHHHHHHHTTSSCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSSSCEEEEEEEEESSH
T ss_pred HHHHHHhCCCCcccHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHhCCcHHHHcCCCCCCeEEEEEEeCCCCH
Confidence 5 889999999999999999998642 222 23579999999999999999999999999997 568999998888899
Q ss_pred HHHHHHHHHHHHcCCCeEEEecCCC------------------------hhHHHHHHHHHHhh-CCCcEEEEeCCCCCCH
Q 015289 188 AEAAELASKYRKQGFTTLKLKVGKN------------------------LKEDIEVLRAIRAV-HPDSSFILDANEGYKP 242 (409)
Q Consensus 188 ~~~~~~~~~~~~~Gf~~~KiKvG~~------------------------~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~ 242 (409)
+++.+++++++++||+++|+|+|.. ++.|++++++||++ ++++.|++|+|++|+.
T Consensus 156 e~~~~~a~~~~~~G~~~iKlKvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~v~avR~avG~d~~L~vDaN~~~~~ 235 (422)
T 3tji_A 156 EALFASVDALIAQGYRHIRCQLGFYGGTPSALHAPDNPTPGAWFDQQEYMSNTVEMFHALREKYGWKLHILHDVHERLFP 235 (422)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEESCCCBCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCSCH
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCCcccccccccccccccccccchhHHHHHHHHHHHHHHHcCCCCEEEEECCCCCCH
Confidence 9999999999999999999999842 56899999999997 8999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-
Q 015289 243 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG- 321 (409)
Q Consensus 243 ~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G- 321 (409)
++|+++++.|+++++ .|||||++++|++++++|++ ++++||++||+++++++++++++.+++|++|+|++++|
T Consensus 236 ~~A~~~~~~Le~~~i--~~iEqP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~ll~~ga~d~v~~k~~~~GG 309 (422)
T 3tji_A 236 QQAVQLAKQLEPFQP--YFIEDILPPQQSAWLEQVRQ----QSCVPLALGELFNNPAEWHDLIVNRRIDFIRCHVSQIGG 309 (422)
T ss_dssp HHHHHHHHHHGGGCC--SEEECCSCGGGGGGHHHHHH----HCCCCEEECTTCCSGGGTHHHHHTTCCSEECCCGGGGTS
T ss_pred HHHHHHHHHHHhhCC--CeEECCCChhhHHHHHHHHh----hCCCCEEEeCCcCCHHHHHHHHhcCCCCEEecCccccCC
Confidence 999999999999987 49999999999999999875 68899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHHccCCCCceeccccccccccCCCCCCeeeeCcEEecCCCCCcc
Q 015289 322 VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 400 (409)
Q Consensus 322 i~~~~~i~~~A~~~gi~~~~~~~~-es~i~~~~~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG 400 (409)
++++++++++|+++|+++++||+. +|+|++++++||++++||+.++|++.+..+.+|++.++++++||++.+|++||||
T Consensus 310 it~~~kia~lA~a~gv~v~~h~~~~~s~Ig~aA~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlG 389 (422)
T 3tji_A 310 ITPALKLAHLCQAFGVRLAWHGPGDMTPIGVAVNTHLNIHLHNAAIQEFIPRSATTNDVFPGAPEVKEGFVYPPVQPGIG 389 (422)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCCSSSCHHHHHHHHHHHHHCTTBCCEECCCCCHHHHHHSTTCCCCBTTEECCCCSSBSC
T ss_pred HHHHHHHHHHHHHcCCEEEecCCCCccHHHHHHHHHHHHhCCCCceEeccCcchhhhhccCCCceeECCEEECCCCCcCC
Confidence 999999999999999999999995 7999999999999999999999987654456778888889999999999999999
Q ss_pred cccCCCCc
Q 015289 401 GFLHWDNI 408 (409)
Q Consensus 401 ~~~d~d~~ 408 (409)
+++|++.+
T Consensus 390 ve~d~~~l 397 (422)
T 3tji_A 390 VGFNEALA 397 (422)
T ss_dssp CCCCHHHH
T ss_pred CCcCHHHH
Confidence 99999865
|
| >3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-68 Score=540.86 Aligned_cols=341 Identities=20% Similarity=0.221 Sum_probs=302.1
Q ss_pred eeeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHcCCC
Q 015289 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESP 122 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (409)
-.|||++|+++.+. | .++.++|||+||+|++||||+.+.. ..+ .+...+++ +.|.|+|++
T Consensus 15 ~~mkIt~v~~~~~~-----~---------~~~~~~V~v~td~G~~G~GE~~~~~--~~~---~~~~~i~~~l~p~LiG~d 75 (418)
T 3r4e_A 15 SHMKITAARVIITC-----P---------GRNFVTLKIETDQGVYGIGDATLNG--REL---SVVAYLQEHVAPCLIGMD 75 (418)
T ss_dssp CCCCEEEEEEEEEC-----S---------SSCEEEEEEEETTSCEEEEECCCTT--CHH---HHHHHHHHTHHHHHTTSC
T ss_pred CCCEEEEEEEEEEc-----C---------CCcEEEEEEEECCCCEEEEeccCCC--ChH---HHHHHHHHHHHHHhcCCC
Confidence 45999999987652 1 1368999999999999999986532 222 22334555 889999999
Q ss_pred CCCHHHHHHHHHhhc--C-CChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHH
Q 015289 123 AMALGSVFGVVAGLL--P-GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYR 198 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~--~-g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~ 198 (409)
+.+++.+|+.+++.. + |.....|+||||||||||+||.+|+|||+||||+ +++||+|.+++..+++++.+.+++++
T Consensus 76 p~~ie~l~~~~~~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~e~~~~~a~~~~ 155 (418)
T 3r4e_A 76 PRRIEDIWQYVYRGAYWRRGPVTMRAIAAVDMALWDIKAKMAGMPLYQLLGGRSRDGIMVYGHANGSDIAETVEAVGHYI 155 (418)
T ss_dssp TTCHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHTCCSCSSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHhHhHcCCcHHHHhCCccCCeeeEEEeCCCCCHHHHHHHHHHHH
Confidence 999999999998642 2 2223578999999999999999999999999997 57899999988889999999999999
Q ss_pred HcCCCeEEEecCC---------------------------------ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHH
Q 015289 199 KQGFTTLKLKVGK---------------------------------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQE 244 (409)
Q Consensus 199 ~~Gf~~~KiKvG~---------------------------------~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~ 244 (409)
++||+++|+|+|. +++.|++++++||++ ++++.|++|+|++|+.++
T Consensus 156 ~~Gf~~~K~k~G~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDaN~~~~~~~ 235 (418)
T 3r4e_A 156 DMGYKAIRAQTGVPGIKDAYGVGRGKLYYEPADASLPSVTGWDTRKALNYVPKLFEELRKTYGFDHHLLHDGHHRYTPQE 235 (418)
T ss_dssp HTTCSEEEEEECCTTC------------------CCCCEEEECHHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHH
T ss_pred HcCCCEEEEecCCccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHH
Confidence 9999999999984 157899999999998 899999999999999999
Q ss_pred HHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HH
Q 015289 245 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VL 323 (409)
Q Consensus 245 A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~ 323 (409)
|+++++.|+++++ .|||||++++|++++++|++ ++++||++||+++++.+++++++.+++|++|+|++++| ++
T Consensus 236 A~~~~~~L~~~~i--~~iEqP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~a~d~v~~k~~~~GGit 309 (418)
T 3r4e_A 236 AANLGKMLEPYQL--FWLEDCTPAENQEAFRLVRQ----HTVTPLAVGEIFNTIWDAKDLIQNQLIDYIRATVVGAGGLT 309 (418)
T ss_dssp HHHHHHHHGGGCC--SEEESCSCCSSGGGGHHHHH----HCCSCEEECTTCCSGGGTHHHHHTTCCSEECCCTTTTTHHH
T ss_pred HHHHHHHHHhhCC--CEEECCCCccCHHHHHHHHh----cCCCCEEEcCCcCCHHHHHHHHHcCCCCeEecCccccCCHH
Confidence 9999999999987 49999999999999999875 68899999999999999999999999999999999998 99
Q ss_pred HHHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHHccCCCCceeccccccccccCCCCCCeeeeCcEEecCCCCCcccc
Q 015289 324 GALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGF 402 (409)
Q Consensus 324 ~~~~i~~~A~~~gi~~~~~~~~-es~i~~~~~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~ 402 (409)
++++++++|+++|+++++||+. +|++++++++||++++||+.++|++.+..+.+|++.++++++||++.+|++||||++
T Consensus 310 ~~~~ia~~A~~~gi~~~~h~~~~~s~ig~aA~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve 389 (418)
T 3r4e_A 310 HLRRIADLASLYQVRTGCHGPTDLSPVTMGCALHFDTWVPNFGIQEYMRHTEETDAVFPHDYWFEKGELFVGETPGHGVD 389 (418)
T ss_dssp HHHHHHHHHHHTTCEEEECCCTTSCHHHHHHHHHHHHHCTTEEEEECCCCCHHHHHHSCBSEEEETTEEEECCCSBSSBC
T ss_pred HHHHHHHHHHHcCCEEeecCCCCccHHHHHHHHHHHHhCCCcceEeecCcchhhHhhcCCCceeeCCEEECCCCCCCCCc
Confidence 9999999999999999999997 699999999999999999999998765545677888889999999999999999999
Q ss_pred cCCCCcC
Q 015289 403 LHWDNIA 409 (409)
Q Consensus 403 ~d~d~~~ 409 (409)
+|++.|+
T Consensus 390 ld~~~l~ 396 (418)
T 3r4e_A 390 IDEELAA 396 (418)
T ss_dssp CCHHHHT
T ss_pred cCHHHHH
Confidence 9998764
|
| >2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-68 Score=533.21 Aligned_cols=349 Identities=24% Similarity=0.361 Sum_probs=318.2
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccC--CccCcccHHHHHHHHHH-HHHHHcCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKESP 122 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (409)
|||++|+++.+++|++.||+++.++.+.++.++|+|+| +|.+||||+.+. +.|++|+++.+...+++ +.|.++|++
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~t-dG~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~~~l~G~d 79 (369)
T 2zc8_A 1 MRIEAAELRILELPLKFRFETSFGVQTKRTILLLRLFG-EGLEGLGEGVMERLPLYREETVAGARYLLEEVFLPRVLGRD 79 (369)
T ss_dssp CBCCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEE-TTEEEEEECCCBSSCSSSSCBHHHHHHHHHHTHHHHHTTCB
T ss_pred CEEEEEEEEEEeccccCCEEEeeEEEeeCcEEEEEEEE-CCeEEEEEeccCCCCcccCCCHHHHHHHHHHHHHHHHcCCC
Confidence 89999999999999999999999999999999999999 599999999865 66888887777666665 789999999
Q ss_pred CCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecC-CCHHHHHHHHHHHHHcC
Q 015289 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI-VSPAEAAELASKYRKQG 201 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~-~~~~~~~~~~~~~~~~G 201 (409)
+.+++.+++.+.. ++|+ ..+++||||||||+.||..|+|+|+||||.+++++++++++. .+++++.+.+++++++|
T Consensus 80 ~~~~~~l~~~~~~-~~g~--~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~~~~~~~g~~~~~~~~~~~a~~~~~~G 156 (369)
T 2zc8_A 80 LPNPEALREALAP-FRGN--PMAKAVLEMAFFDLWAKALGRPLWQVLGGVRQAVEVGVSLGIQPSVEDTLRVVERHLEEG 156 (369)
T ss_dssp CSSHHHHHHHHTT-SCSC--HHHHHHHHHHHHHHHHHHTTSBHHHHHTCCCSEEEBCEEECCCSSHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHH-hcCC--hHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceeceEEecCCCCHHHHHHHHHHHHHhh
Confidence 9999999887743 4443 458999999999999999999999999998788888888877 48999999999999999
Q ss_pred CCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHh
Q 015289 202 FTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA 281 (409)
Q Consensus 202 f~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~ 281 (409)
|+++|+|+++ +.|++++++||++.+++.|++|+|++|+.++ +++++.|+++++ .|||||++++|++++++|++
T Consensus 157 ~~~iKik~~~--~~d~~~v~avr~a~~~~~l~vDan~~~~~~~-~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~~-- 229 (369)
T 2zc8_A 157 YRRIKLKIKP--GWDYEVLKAVREAFPEATLTADANSAYSLAN-LAQLKRLDELRL--DYIEQPLAYDDLLDHAKLQR-- 229 (369)
T ss_dssp CSCEEEECBT--TBSHHHHHHHHHHCTTSCEEEECTTCCCGGG-HHHHHGGGGGCC--SCEECCSCTTCSHHHHHHHH--
T ss_pred hheeeeecCh--hHHHHHHHHHHHHcCCCeEEEecCCCCCHHH-HHHHHHHHhCCC--cEEECCCCcccHHHHHHHHh--
Confidence 9999999964 7899999999997789999999999999999 999999999987 49999999999999999975
Q ss_pred hccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHcc
Q 015289 282 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG 360 (409)
Q Consensus 282 ~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa 360 (409)
++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|++++++++++|+++.++++|++ +
T Consensus 230 --~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~hla-a 306 (369)
T 2zc8_A 230 --ELSTPICLDESLTGAEKARKAIELGAGRVFNVKPARLGGHGESLRVHALAESAGIPLWMGGMLEAGVGRAHNLHLA-T 306 (369)
T ss_dssp --HCSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCCEEECCCCCCHHHHHHHHHHT-T
T ss_pred --hCCCCEEEcCccCCHHHHHHHHHhCCCCEEEEchhhhCCHHHHHHHHHHHHHcCCcEEecCccccHHHHHHHHHHH-c
Confidence 57899999999999999999999999999999999997 9999999999999999999999999999999999999 9
Q ss_pred CCCCce-eccccc-cccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 361 LGCFKF-IDLDTP-LLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 361 ~~~~~~-~e~~~p-~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
++|+.+ +|++.+ ..+.+|++.+++.++||++.+|++||||+++|++.+
T Consensus 307 ~~~~~~~~e~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 356 (369)
T 2zc8_A 307 LPGFTKPGDVSSASRYWEEDIVEEALEAKDGLMPVPEGVGIGVHLKLPFV 356 (369)
T ss_dssp STTBCSCBSCCCGGGTBSSCSBSSCCCCBTTEEECCCSSBTCCCBCHHHH
T ss_pred CCCCCcccccCCcchhhhhccccCCcEEECCEEECCCCCcCCcccCHHHH
Confidence 999888 888765 245678888888999999999999999999999865
|
| >1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-68 Score=529.58 Aligned_cols=348 Identities=24% Similarity=0.370 Sum_probs=317.6
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccC--CccCcccHHHHHHHHHH-HHHHHcCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKESP 122 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (409)
|||++|+++++++|++.||+++.++.+.++.++|+|+|++| +||||+.+. +.+++|+++.+...+++ +.|.|+|++
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~v~v~td~G-~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~~~l~g~d 79 (368)
T 1sjd_A 1 MKLSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAG-EGWGECVTMAGPLYSSEYNDGAEHVLRHYLIPALLAAE 79 (368)
T ss_dssp CCCCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSC-EEEEECCCBSSSSSSSCBHHHHHHHHHHTHHHHHHHSS
T ss_pred CEEEEEEEEEEeccccCCeEeeeeEEecccEEEEEEEeCCC-EEEEEecCCCCCccccCcHHHHHHHHHHHHHHHHcCCC
Confidence 89999999999999999999999999999999999999999 999999865 56888887777766765 789999999
Q ss_pred CCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecC-CCHHHHHHHHHHHHHcC
Q 015289 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI-VSPAEAAELASKYRKQG 201 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~-~~~~~~~~~~~~~~~~G 201 (409)
+.+++.+++.+.. ++|+ ..+++||||||||+.||..|+|+|+||||.+++++++++++. .+++++.+.+++++++|
T Consensus 80 ~~~~~~l~~~~~~-~~g~--~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~~~~~~~g~~~~~~~~~~~a~~~~~~G 156 (368)
T 1sjd_A 80 DITAAKVTPLLAK-FKGH--RMAKGALEMAVLDAELRAHERSFAAELGSVRDSVPCGVSVGIMDTIPQLLDVVGGYLDEG 156 (368)
T ss_dssp SCCHHHHHHHHTT-SCSC--HHHHHHHHHHHHHHHHHHTTCBHHHHHTCCCSEEEBEEEECCCSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHH-hcCC--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCccceEEeeCCCCHHHHHHHHHHHHHhC
Confidence 9999999887743 4553 458999999999999999999999999998788988888877 48999999999999999
Q ss_pred CCeEEEecCCChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHH
Q 015289 202 FTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 280 (409)
Q Consensus 202 f~~~KiKvG~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~ 280 (409)
|+++|+|+++ +.|++++++||++ ++++.|++|+|++|+.++ +++++.|+++++. |||||++++|++++++|++
T Consensus 157 f~~vKik~~~--~~~~e~v~avr~~~g~~~~l~vDan~~~~~~~-~~~~~~l~~~~i~--~iE~P~~~~~~~~~~~l~~- 230 (368)
T 1sjd_A 157 YVRIKLKIEP--GWDVEPVRAVRERFGDDVLLQVDANTAYTLGD-APQLARLDPFGLL--LIEQPLEEEDVLGHAELAR- 230 (368)
T ss_dssp CSEEEEECBT--TBSHHHHHHHHHHHCTTSEEEEECTTCCCGGG-HHHHHTTGGGCCS--EEECCSCTTCHHHHHHHHT-
T ss_pred ccEEEEecCc--hhHHHHHHHHHHhcCCCceEEEeccCCCCHHH-HHHHHHHHhcCCC--eEeCCCChhhHHHHHHHHH-
Confidence 9999999974 7899999999997 899999999999999999 9999999999874 9999999999999999874
Q ss_pred hhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHc
Q 015289 281 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSA 359 (409)
Q Consensus 281 ~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaa 359 (409)
++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++++++||+++.++++||+
T Consensus 231 ---~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~hla- 306 (368)
T 1sjd_A 231 ---RIQTPICLDESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHGIPVWCGGMIETGLGRAANVALA- 306 (368)
T ss_dssp ---TCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECTTTTTSHHHHHHHHHHHHHTTCCEEECCCCCCHHHHHHHHHHH-
T ss_pred ---hCCCCEEECCCcCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEeCCccccHHHHHHHHHHH-
Confidence 67899999999999999999999999999999999997 9999999999999999999999999999999999999
Q ss_pred cCCCCce-eccccc-cccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 360 GLGCFKF-IDLDTP-LLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 360 a~~~~~~-~e~~~p-~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
+++|+.+ +|++.+ ..+.+|+ .++++++||++.+|++||||+++|++.+
T Consensus 307 a~~~~~~~~e~~~~~~~~~~d~-~~~~~~~~G~~~~p~~PGlGv~~d~~~l 356 (368)
T 1sjd_A 307 SLPNFTLPGDTSASDRFYKTDI-TEPFVLSGGHLPVPTGPGLGVAPIPELL 356 (368)
T ss_dssp TSTTBCSCBSCCCGGGTCSSCS-SSCCCCSSSEEECCCSSBTSCCCCHHHH
T ss_pred cCCCCCcccccCCchhhhhhcC-CCCceEECCEEECCCCCcCCceeCHHHH
Confidence 9999988 888765 3456777 7788899999999999999999999865
|
| >3va8_A Probable dehydratase; enolase, magnesium binding site, lyase; 2.00A {Gibberella zeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-68 Score=540.49 Aligned_cols=345 Identities=17% Similarity=0.230 Sum_probs=301.7
Q ss_pred eeeEeEEEEEEEEecCccceeeccceeee-eeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCC
Q 015289 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQ-VENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA 123 (409)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~p~~~a~~~~~~-~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~ 123 (409)
.|||++|+++++++| ..|+.++.|.... .+.++|||+||+ ++||||+.. .+... ..++.+.|.|+|+++
T Consensus 26 ~mkIt~i~~~~v~~p-~~p~~~~~g~~~~~~~~~~V~v~td~-~~G~GE~~g-----~~~~~---~~i~~l~p~LiG~d~ 95 (445)
T 3va8_A 26 RSIIKEIVITPVAFH-DMPLLNSVGVHEPFALRSIIEIITED-SYGLGESYG-----DSAHL---DRLQKAADKIKGLSV 95 (445)
T ss_dssp HTBCCEEEEEEEEEE-CCCBEETTEECCSEEEEEEEEEECSS-CEEEEEEEC-----CHHHH---HHHHHHHHHHTTSBT
T ss_pred CCEEEEEEEEEEecC-CcccccccCcccCceeEEEEEEEECC-CEEEEecCC-----cHHHH---HHHHHHHHHHCCCCh
Confidence 399999999999999 8899998876433 567999999999 999999853 23222 234668999999999
Q ss_pred CCHHHHHHHHHhhcCCC----------------hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeec---
Q 015289 124 MALGSVFGVVAGLLPGH----------------QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIP--- 183 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~g~----------------~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~--- 183 (409)
.+++.+|+.+++.+.++ ....|++|||||||||+||.+|+|||+||||. +++||+|.++.
T Consensus 96 ~~ie~i~~~l~~~~~~~~~~~~~G~~G~~~~~~~~~~A~sAiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~~a~~~y~~ 175 (445)
T 3va8_A 96 YSTNVIYQRCVESLRNDTNTGGDGMGGMVVTASVADKVFSPFEVACLDLQGKLAGISVSDLLGGRVRDSVQYSAYLFYKW 175 (445)
T ss_dssp TCHHHHHHHHHHHTTTCCC--CCSSTTSSCCSCHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSSSEEEBCEEEECBC
T ss_pred hHHHHHHHHHHHhhhcccccccccccCccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeEEEeeeecccc
Confidence 99999999998764321 23468999999999999999999999999997 67899965431
Q ss_pred -------------CCCHHHHHHHHHHHHHc-CCCeEEEecCC-ChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHH
Q 015289 184 -------------IVSPAEAAELASKYRKQ-GFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEV 248 (409)
Q Consensus 184 -------------~~~~~~~~~~~~~~~~~-Gf~~~KiKvG~-~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~ 248 (409)
..+++++++++++++++ ||++||+|+|. ++++|++++++||++.|++.|++|+|++|++++|+++
T Consensus 176 ~~~~g~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~~~~~Di~~v~avRea~~~~~L~vDaN~~w~~~~Ai~~ 255 (445)
T 3va8_A 176 GGHPGDEDDEYGPALDPEGVVKQAKKIIDEYGFKAIKLKGGVFPPADEVAAIKALHKAFPGVPLRLDPNAAWTVETSKWV 255 (445)
T ss_dssp SSSTTSCCCTTCCBCSHHHHHHHHHHHHHHHCCSCEEEECSSSCHHHHHHHHHHHHHHSTTCCEEEECTTCBCHHHHHHH
T ss_pred cccccccccccccCCCHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHHHHHHHhCCCCcEeeeCCCCCCHHHHHHH
Confidence 26899999999998875 99999999995 8899999999999988999999999999999999999
Q ss_pred HHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHH
Q 015289 249 LEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALE 327 (409)
Q Consensus 249 ~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~ 327 (409)
+++|+++ + .|||||++ |++++++|++ ++++|||+||++++..+++++++.+++|++|+|++++| ++++++
T Consensus 256 ~~~L~~~-l--~~iEeP~~--d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~div~~d~~~~GGitea~k 326 (445)
T 3va8_A 256 AKELEGI-V--EYLEDPAG--EIEGMAAVAK----EASMPLATNMAVVAFDHLPPSILQDAVQVILSDHHFWGGLRKSQT 326 (445)
T ss_dssp HHHTTTT-C--SEEESCBS--HHHHHHHHHT----TCSSCEEESSSCCSGGGHHHHHHTTCCSEEEECHHHHTSHHHHHH
T ss_pred HHHHhhh-c--CeEeecCc--CHHHHHHHHH----cCCCCEEeCCccCCHHHHHHHHHcCCCCEEEecchhcCCHHHHHH
Confidence 9999998 7 49999995 7999999864 78999999999999999999999999999999999998 999999
Q ss_pred HHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCcee-ccccccccc-cCCC-CCCeeeeCcEEecCCCCCcccccC
Q 015289 328 IIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI-DLDTPLLLS-EDPV-LDGYEVSGAVYKFTNARGHGGFLH 404 (409)
Q Consensus 328 i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~-e~~~p~~~~-~d~~-~~~~~~~~G~i~~p~~PGlG~~~d 404 (409)
++++|+++|+++++|++.+++|+.++++||++++||+.+. +...|+... +|++ .++++++||++.+|++||||+++|
T Consensus 327 ia~lA~~~gv~v~~h~~~e~~I~~aa~~hlaaa~p~~~~~~d~~~~~~~~~~d~~~~~~~~~~~G~i~vp~~PGLGveld 406 (445)
T 3va8_A 327 LASICATWGLRLSMHSNSHLGISLAAMTHLASATPNLDYACDTHWPWKRRDEDVVIEGALKWKDGGVIVPSGPGLGVELD 406 (445)
T ss_dssp HHHHHHHHTCEEEECCCSCCHHHHHHHHHHHHTCTTBCSCBCCCGGGSCTTCCSBCTTSCCEETTEEECCCSSBTSCCBC
T ss_pred HHHHHHHcCCEEEEeCCcccHHHHHHHHHHHHhCCCCceeeeccchhhhcccccccCCCceEECCEEECCCCCcCCCccC
Confidence 9999999999999999999999999999999999998774 444465442 3555 467899999999999999999999
Q ss_pred CCCc
Q 015289 405 WDNI 408 (409)
Q Consensus 405 ~d~~ 408 (409)
+|.|
T Consensus 407 ~~~l 410 (445)
T 3va8_A 407 RERL 410 (445)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
|
| >3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-68 Score=540.57 Aligned_cols=342 Identities=16% Similarity=0.195 Sum_probs=300.2
Q ss_pred ee-eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECC-CceEEEEeccCCccCcccHHHHHHHHHH-HHHHHcC
Q 015289 44 FT-VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSN-GCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKE 120 (409)
Q Consensus 44 ~~-mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~-G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g 120 (409)
|+ |||++|+++.+. | + ..+.++|||+||+ |++||||+.+.. +.+. ....+++ +.|.|+|
T Consensus 24 ~~~mkIt~v~~~~~~-----~-----~---~~~~v~V~v~Td~~Gi~G~GE~~~~~--~~~~---~~~~i~~~l~p~LiG 85 (440)
T 3t6c_A 24 MSNLFITNVKTILTA-----P-----G---GIDLVVVKIETNEPGLYGLGCATFTQ--RIYA---VQSAIDEYLAPFLIG 85 (440)
T ss_dssp --CCCEEEEEEEEEC-----T-----T---SSCEEEEEEEESSTTCEEEEECCCGG--GHHH---HHHHHHTTHHHHHTT
T ss_pred CCCCEEEEEEEEEEC-----C-----C---CceEEEEEEEEcCCCCEEEEeeccCC--CHHH---HHHHHHHHHHHHHcC
Confidence 44 999999998753 1 1 1268999999999 999999987532 2332 2233455 8899999
Q ss_pred CCCCCHHHHHHHHHhhc--CCC-hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHH
Q 015289 121 SPAMALGSVFGVVAGLL--PGH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASK 196 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~--~g~-~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~ 196 (409)
+++.+++.+|+.+++.. ++. ....|+||||||||||+||.+|+|||+||||. +++|++|.+++..+++++.+++++
T Consensus 86 ~dp~~ie~i~~~~~~~~~~~~g~~~~~A~saID~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~e~~~~~a~~ 165 (440)
T 3t6c_A 86 KDPARIEDIWQSAAVSGYWRNGPVMNNALSGIDMALWDIKGKQAGLPVYELLGGKCRDGIALYVHTDGADEVEVEDSARA 165 (440)
T ss_dssp CCTTCHHHHHHHHHHTTSCCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSSEEEEEEECCSSHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHhcccCCCcchhhHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCeeEEEEECCCCCHHHHHHHHHH
Confidence 99999999999998642 222 23568999999999999999999999999997 568999998888999999999999
Q ss_pred HHHcCCCeEEEecCCC-----------------------------------------hhHHHHHHHHHHhh-CCCcEEEE
Q 015289 197 YRKQGFTTLKLKVGKN-----------------------------------------LKEDIEVLRAIRAV-HPDSSFIL 234 (409)
Q Consensus 197 ~~~~Gf~~~KiKvG~~-----------------------------------------~~~d~~~l~avr~~-~~~~~l~v 234 (409)
++++||+++|+|+|.. ++.|++++++||++ ++++.|++
T Consensus 166 ~~~~Gf~~~K~KvG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~v~avR~a~G~d~~L~v 245 (440)
T 3t6c_A 166 KMEEGYQYIRCQMGMYGGAGTDDLRLIANRMVKAKNIQPKRSPRTKAPGIYFDPEAYAKSIPRLFDHLRNKLGFSVELLH 245 (440)
T ss_dssp HHHTTCSEEEECSSSSTTCCBCCHHHHSSCBCCCSSCCCCCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHCSSSEEEE
T ss_pred HHHcCCCEEEEeeccCCccccccccccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHhcCCCCeEEE
Confidence 9999999999999831 46899999999997 79999999
Q ss_pred eCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 015289 235 DANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 314 (409)
Q Consensus 235 DaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~ 314 (409)
|+|++|+.++|++++++|+++++ .|||||++++|++++++|++ ++++||++||++++..+++++++.+++|++|
T Consensus 246 DaN~~~~~~~A~~~~~~L~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~ 319 (440)
T 3t6c_A 246 DAHERITPINAIHMAKALEPYQL--FFLEDPVAPENTEWLKMLRQ----QSSTPIAMGELFVNVNEWKPLIDNKLIDYIR 319 (440)
T ss_dssp ECTTCSCHHHHHHHHHHTGGGCC--SEEECSSCGGGGGGHHHHHH----HCCSCEEECTTCCSHHHHHHHHHTTCCSEEC
T ss_pred ECCCCCCHHHHHHHHHHhhhcCC--CEEECCCChhhHHHHHHHHh----hcCCCEEeCcccCCHHHHHHHHHcCCcccee
Confidence 99999999999999999999987 49999999999999999875 6889999999999999999999999999999
Q ss_pred eCCCCCc-HHHHHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHHccCCCCceeccccccccccCCCCCCeeeeCcEEe
Q 015289 315 IKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYK 392 (409)
Q Consensus 315 ~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~-es~i~~~~~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~ 392 (409)
+|++++| ++++++++++|+++|+++++|++. +|++++++++||++++||+.++|+..+..+.++++.++++++||++.
T Consensus 320 ~k~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~~s~Ig~aa~~hlaaa~pn~~~~E~~~~~~~~~~~~~~~~~~~~G~i~ 399 (440)
T 3t6c_A 320 CHISSIGGITPAKKIAIYSELNGVRTAWHSPGDISPIGVCANMHLDLSSPNFGIQEYTPMNDALREVFPGCPEVDQGYAY 399 (440)
T ss_dssp CCGGGGTSHHHHHHHHHHHHHTTCEECCCCSSSSCHHHHHHHHHHHHHCTTBCCEECCCCCHHHHHHSTTCCEEETTEEE
T ss_pred echhhhCCHHHHHHHHHHHHHcCCEEEeccCCCccHHHHHHHHHHHHhCCCCceEeecCcchhhHhhcCCCceecCCEEE
Confidence 9999997 999999999999999999999985 79999999999999999999999876444456788888999999999
Q ss_pred cCCCCCcccccCCCCcC
Q 015289 393 FTNARGHGGFLHWDNIA 409 (409)
Q Consensus 393 ~p~~PGlG~~~d~d~~~ 409 (409)
+|++||||+++|++.|+
T Consensus 400 vp~~PGLGveld~~~l~ 416 (440)
T 3t6c_A 400 VNDKPGLGIDINEALAA 416 (440)
T ss_dssp CCCCSBTSCCCCHHHHT
T ss_pred CCCCCCCCcccCHHHHH
Confidence 99999999999998764
|
| >3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-68 Score=539.75 Aligned_cols=340 Identities=18% Similarity=0.223 Sum_probs=301.1
Q ss_pred eeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHcCCCC
Q 015289 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPA 123 (409)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~ 123 (409)
.|||++|+++.+. | .++.++|||+||+|++||||+.+.. ..+ .+...+++ +.|.|+|++|
T Consensus 23 ~mkIt~v~~~~~~-----~---------~~~~v~V~v~td~G~~G~GE~~~~~--~~~---~~~~~i~~~l~p~LiG~dp 83 (425)
T 3vcn_A 23 MLKIIDAKVIVTC-----P---------GRNFVTLKITTEDGITGVGDATLNG--REL---SVVSFLQDHMVPSLIGRDA 83 (425)
T ss_dssp CCBEEEEEEEEEC-----S---------SSCEEEEEEEETTSCEEEEECCCTT--CHH---HHHHHHHHTTHHHHTTCBT
T ss_pred CCEEEEEEEEEEc-----C---------CCcEEEEEEEECCCCEEEEeccCCC--ChH---HHHHHHHHHHHHHhCCCCh
Confidence 4999999987652 1 1368999999999999999986532 222 22334454 7899999999
Q ss_pred CCHHHHHHHHHhhc--C-CChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHH
Q 015289 124 MALGSVFGVVAGLL--P-GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRK 199 (409)
Q Consensus 124 ~~~~~~~~~~~~~~--~-g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~ 199 (409)
.+++.+|+.+++.. + |.....|+||||||||||+||.+|+|||+||||+ +++||+|.+++..+++++.++++++++
T Consensus 84 ~~ie~i~~~~~~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~e~~~~~a~~~~~ 163 (425)
T 3vcn_A 84 HQIEDIWQFFYRGSYWRGGPVAMTALAAVDMALWDIKGKVAGLPVYQLLGGACRTGVTVYGHANGETIEDTIAEAVKYKA 163 (425)
T ss_dssp TCHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGGTTCCSSSSEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhcccCCchHHHHHHHHHHHHHHHHhHHHcCCcHHHHcCCCCCCeeeEEEeCCCCCHHHHHHHHHHHHH
Confidence 99999999998642 2 2223568999999999999999999999999997 578999998888899999999999999
Q ss_pred cCCCeEEEecCC----------------C-----------------hhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHH
Q 015289 200 QGFTTLKLKVGK----------------N-----------------LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEA 245 (409)
Q Consensus 200 ~Gf~~~KiKvG~----------------~-----------------~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A 245 (409)
+||+++|+|+|. + ++.|++++++||++ ++++.|++|+|++|+.++|
T Consensus 164 ~Gf~~iKlKvg~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~d~~~~~~~d~e~v~avR~a~G~d~~l~vDaN~~~~~~~A 243 (425)
T 3vcn_A 164 MGYKAIRLQTGVPGLASTYGVSKDKMFYEPADNDLPTENIWSTAKYLNSVPKLFERAREVLGWDVHLLHDVHHRLTPIEA 243 (425)
T ss_dssp TTCSEEEEEECCTTCSCCTTCSSCSSCCCCCCBSSCCEEEECHHHHHTTTHHHHHHHHHHHCSSSEEEEECTTCCCHHHH
T ss_pred cCCCEEEEeecCccccccccccccccccCcccccccccccccchhHHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHH
Confidence 999999999984 0 46789999999998 8999999999999999999
Q ss_pred HHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHH
Q 015289 246 VEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLG 324 (409)
Q Consensus 246 ~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~ 324 (409)
+++++.|+++++ .|||||++++|++++++|++ ++++||++||+++++.+++++++.+++|++|+|++++| +++
T Consensus 244 ~~~~~~L~~~~i--~~iEqP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit~ 317 (425)
T 3vcn_A 244 ARLGKDLEPYRL--FWLEDSVPAENQAGFRLIRQ----HTTTPLAVGEIFAHVWDAKQLIEEQLIDYLRATVLHAGGITN 317 (425)
T ss_dssp HHHHHHHGGGCC--SEEECCSCCSSTTHHHHHHH----HCCSCEEECTTCCSGGGTHHHHHTTCCSEECCCTTTTTHHHH
T ss_pred HHHHHHHHhcCC--CEEECCCChhhHHHHHHHHh----cCCCCEEeCCCcCCHHHHHHHHHcCCCCeEecChhhcCCHHH
Confidence 999999999987 49999999999999999875 68999999999999999999999999999999999998 999
Q ss_pred HHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHHccCCCCceeccccccccccCCCCCCeeeeCcEEecCCCCCccccc
Q 015289 325 ALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFL 403 (409)
Q Consensus 325 ~~~i~~~A~~~gi~~~~~~~~-es~i~~~~~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~ 403 (409)
+++++++|+++|+++++||+. +|++++++++||++++||+.++|++.+..+.++++.++++++||++.+|++||||+++
T Consensus 318 ~~~ia~~A~~~gi~~~~h~~~~~s~ig~aA~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGvel 397 (425)
T 3vcn_A 318 LKKIAAFADLHHVKTGCHGATDLSPVTMAAALHFDMSITNFGLQEYMRHTPETDAVFPHAYTFSDGMLHPGDKPGLGVDI 397 (425)
T ss_dssp HHHHHHHHGGGTCEECCCCCTTSCHHHHHHHHHHHHTCSCBCCEECCCCCHHHHHHSCBCCEEETTEEECCSSSBTSBCC
T ss_pred HHHHHHHHHHcCCEEeeccCCcccHHHHHHHHHHHHhCCCCceEeecCcchhhhhhcCCCceeeCCEEECCCCCCCCCcC
Confidence 999999999999999999997 6999999999999999999999987655556778888899999999999999999999
Q ss_pred CCCCcC
Q 015289 404 HWDNIA 409 (409)
Q Consensus 404 d~d~~~ 409 (409)
|++.|+
T Consensus 398 d~~~l~ 403 (425)
T 3vcn_A 398 DEDLAA 403 (425)
T ss_dssp CHHHHT
T ss_pred CHHHHH
Confidence 998764
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-68 Score=531.26 Aligned_cols=348 Identities=24% Similarity=0.304 Sum_probs=314.7
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcc-cHHHHHHHHHH-HHHHHcCCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAE-DQQTAMVKASE-ACEVLKESPA 123 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e-~~~~~~~~~~~-~~~~l~g~~~ 123 (409)
|||++|+++++++|++.||+++.++.+.++.++|+|+|++|++||||+. ++| +. +...+++ +.|.|+|+++
T Consensus 4 mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~Ge~~-----~~~~~~--~~~~i~~~l~~~l~g~d~ 76 (384)
T 2pgw_A 4 VKISNVRVRPLVLPLKQPYHWSYGIRESFAVNLIEIEADDGTVGIGECT-----VAPDQT--GTAAILYRLAKHLVGHSP 76 (384)
T ss_dssp CCEEEEEEEEEEEEEEEEEECSSSEEEEEEEEEEEEEETTSCEEEEEEE-----CTTCHH--HHHHHHHHHHGGGTTSCG
T ss_pred CEEEEEEEEEEecccCccceeccceeeeceEEEEEEEECCCCEEEEccC-----CCchHH--HHHHHHHHHHHHHCCCCh
Confidence 8999999999999999999999999999999999999999999999997 234 32 3344554 7899999999
Q ss_pred CCHHHHHHH-HHhhc--CCC----hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHH
Q 015289 124 MALGSVFGV-VAGLL--PGH----QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELAS 195 (409)
Q Consensus 124 ~~~~~~~~~-~~~~~--~g~----~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~ 195 (409)
.+++.+|+. +++.. .|. ..+.+++|||+||||+.||..|+|+|+||||. ++++|+|++++..+++++.+.++
T Consensus 77 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~v~~~~~~~~~~~e~~~~~a~ 156 (384)
T 2pgw_A 77 HDVAPLIARIFHQEYLGHGANIMRAANQIFSGIDMAMWDLQGKLAGLPVHQLLGGAHRKAVGYFYFLQGETAEELARDAA 156 (384)
T ss_dssp GGHHHHHHHHHHHHTGGGTCCCHHHHHHHHHHHHHHHHHHHHHHHTSBGGGTTTCCSSSEEEBCEECCCSSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhcccccccccHHHHHHHHHHHHHHHHhHcCCCHHHHcCCCCCCceEEEEECCCCCHHHHHHHHH
Confidence 999999998 84421 221 13578999999999999999999999999997 67999999988889999999999
Q ss_pred HHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHH
Q 015289 196 KYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLG 275 (409)
Q Consensus 196 ~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~ 275 (409)
+++++||+.+|+|+|.+++.|++++++||++.+++.|++|+|++|+.++|+++++.|+++++. |||||++++|+++++
T Consensus 157 ~~~~~Gf~~iKik~g~~~~~~~e~v~avr~a~gd~~l~vD~n~~~~~~~a~~~~~~l~~~~i~--~iEqP~~~~~~~~~~ 234 (384)
T 2pgw_A 157 VGHAQGERVFYLKVGRGEKLDLEITAAVRGEIGDARLRLDANEGWSVHDAINMCRKLEKYDIE--FIEQPTVSWSIPAMA 234 (384)
T ss_dssp HHHHTTCCEEEEECCSCHHHHHHHHHHHHTTSTTCEEEEECTTCCCHHHHHHHHHHHGGGCCS--EEECCSCTTCHHHHH
T ss_pred HHHHcCCCEEEECcCCCHHHHHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcCCC--EEeCCCChhhHHHHH
Confidence 999999999999999889999999999999833999999999999999999999999999974 999999999999999
Q ss_pred HhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHH
Q 015289 276 HVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFA 354 (409)
Q Consensus 276 ~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~ 354 (409)
+|++ ++++||++||++.++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|+|+||+++.+++
T Consensus 235 ~l~~----~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~ 310 (384)
T 2pgw_A 235 HVRE----KVGIPIVADQAAFTLYDVYEICRQRAADMICIGPREIGGIQPMMKAAAVAEAAGLKICIHSSFTTGITTCAE 310 (384)
T ss_dssp HHHH----HCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCCEEECCCSCCHHHHHHH
T ss_pred HHHh----hCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEcchhhCCHHHHHHHHHHHHHCCCeEeeccCcCCHHHHHHH
Confidence 9975 57899999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred HHHHccCCCCce-ec-cccccccccCCCCC-CeeeeCcEEecCCCCCcccccCCCCc
Q 015289 355 GHLSAGLGCFKF-ID-LDTPLLLSEDPVLD-GYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 355 ~hlaaa~~~~~~-~e-~~~p~~~~~d~~~~-~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
+|+++++||+.+ ++ +++| +.+|++.+ ++.++||++.+|++||||+++|++.+
T Consensus 311 ~hlaaa~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 365 (384)
T 2pgw_A 311 HHIGLAIPNLDDGNQIMWQL--VQEDIVSSPDLTPKNGWLDAFRKPGLGFQLAEDLV 365 (384)
T ss_dssp HHHHHHCSSBCSSBCCCGGG--BSSCSEEESCCCCBTTEEECCCSSBTCCEECHHHH
T ss_pred HHHHHhCCCcccccccccCc--hhhhhccCCCceEECCEEECCCCCcCCCcCCHHHH
Confidence 999999999876 56 6566 36788877 88899999999999999999999865
|
| >4hnl_A Mandelate racemase/muconate lactonizing enzyme; dehydratase, magnesium binding, enzyme function initiative,; 1.48A {Enterococcus gallinarum EG2} PDB: 3s47_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-68 Score=541.90 Aligned_cols=342 Identities=15% Similarity=0.216 Sum_probs=300.2
Q ss_pred eeeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHcCCC
Q 015289 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESP 122 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (409)
+.++|++|+++.+.- ..++.++|||+||+|++||||+.+ .++++....+ +++ ++|.|+|++
T Consensus 24 ~~~~It~v~~~~v~~-------------~~~~~vlV~v~Td~G~~G~GEa~~--~~~~~~~~~~---i~~~lap~LiG~d 85 (421)
T 4hnl_A 24 TPTIITDVKSFAIKP-------------DRHNLVVVKVETNKGISGLGCSTF--QFRPLAVKTV---VDEYLRPLLMGRD 85 (421)
T ss_dssp CCCBEEEEEEEEECS-------------SSSCEEEEEEEETTSCCEEEECCC--TTSHHHHHHH---HHHTHHHHHTTCB
T ss_pred CCceEEEEEEEEECC-------------CCceEEEEEEEECCCCEEEEeccC--CCCHHHHHHH---HHHHHHHHHCCCC
Confidence 456899999888631 124679999999999999999864 2344443332 344 789999999
Q ss_pred CCCHHHHHHHHHhhc--CCC-hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCC-CeeeeeeeecCCCHHHHHHHHHHHH
Q 015289 123 AMALGSVFGVVAGLL--PGH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGGVS-NTITTDITIPIVSPAEAAELASKYR 198 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~--~g~-~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~-~~i~~~~~i~~~~~~~~~~~~~~~~ 198 (409)
|.+++.+|+.+.... ++. ....|+|||||||||++||.+|+|||+||||.. +++|+|.++...+++++.+++++++
T Consensus 86 p~~ie~i~~~~~~~~~~~~~~~~~~A~said~ALwDl~gK~~g~Pl~~LLGG~~r~~v~~y~~~~~~~~~~~~~~a~~~~ 165 (421)
T 4hnl_A 86 ANEIEDIWQVMNVNSYWRNGPITNNAISGIDMALWDIKGQLADMPLYQLLGGKARTAIPAYTHAVADNLDDLYHEIDRFL 165 (421)
T ss_dssp TTCHHHHHHHHHHTTSSCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSSSCEEEEEEEEESSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhccccCCchHHHHHHHHHHHHHHHHHHHhCCCHHHhcCCccCcccceecccCCCCHHHHHHHHHHHH
Confidence 999999999986532 222 235689999999999999999999999999974 5899999988889999999999999
Q ss_pred HcCCCeEEEecCC------------------------ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 015289 199 KQGFTTLKLKVGK------------------------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLY 253 (409)
Q Consensus 199 ~~Gf~~~KiKvG~------------------------~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~ 253 (409)
++||+++|+|+|. +++.|+++++++|++ ++++.|++|+|++|++++|+++++.|+
T Consensus 166 ~~G~~~~K~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~v~avR~a~G~~~~l~vDan~~~~~~~A~~~~~~l~ 245 (421)
T 4hnl_A 166 AAGYRYIRCQLGFYGGNPSQLQTPEEPISGSYFDQTDYMETTLKMFAAIKEKYGNQFQMLHDVHERLHPNQAIQFAKAAE 245 (421)
T ss_dssp HTTCSEEEEEESCCCCCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHTTSSEEEEECTTCSCHHHHHHHHHHHG
T ss_pred HhhHHHHhhccccccCCchhccccccccccccccchhHHHHHHHHHHHHHHHhCCCceEeccccccCCHHHHHHHHHHhh
Confidence 9999999999983 257899999999997 899999999999999999999999999
Q ss_pred hCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHH
Q 015289 254 EMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVV 332 (409)
Q Consensus 254 ~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A 332 (409)
++++ .|||||++++|++++++|++ ++++||++||+++++.+++++++.+++|++|+|++++| ++++++++++|
T Consensus 246 ~~~i--~~iEeP~~~~d~~~~~~l~~----~~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGite~~~ia~~A 319 (421)
T 4hnl_A 246 PYQL--FFLEDILPPDQSHWLTQLRS----QSATPIATGELFNNPMEWQELVKNRQIDFMRAHVSQIGGITPALKLAHFC 319 (421)
T ss_dssp GGCC--SEEECCSCGGGGGGHHHHHT----TCCCCEEECTTCCSGGGTHHHHHTTCCSEECCCGGGGTSHHHHHHHHHHH
T ss_pred hhhh--cccccCCcccchHHHHHHHh----cCCCCeecCcceehhHHHHHHHhcCCceEEEeCCCCCCCHHHHHHHHHHH
Confidence 9997 49999999999999999874 78999999999999999999999999999999999997 99999999999
Q ss_pred HHcCCcEEEccCCc-hHHHHHHHHHHHccCCCCceeccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCcC
Q 015289 333 RASGLNLMIGGMVE-TRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409 (409)
Q Consensus 333 ~~~gi~~~~~~~~e-s~i~~~~~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~~ 409 (409)
+++|+++++|++.+ |+++.++++|++++++|+.+.|+.....+.++++.++++++||++.+|++||||+++|+|+|+
T Consensus 320 ~~~gi~v~~h~~~~~s~i~~aa~~hl~aa~~n~~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGLGveld~~~l~ 397 (421)
T 4hnl_A 320 DAMGVRIAWHTPSDISPVGLAVNTHLNIHLHNAAIQETIELPANTQSVFVGSPQPKGGFFYPMEKSGIGITFDEEAAA 397 (421)
T ss_dssp HHTTCEECCCCCSSSCHHHHHHHHHHHHHCTTBCCEECCCCCHHHHHHEECCCCCBTTEECCCCSSBSCCEECHHHHT
T ss_pred HHCCCeEEEeCCcchhHHHHHHHHHHHHhCCCCccccccCcchhhhhhccCCCeEECCEEECCCCCCCCeeECHHHHh
Confidence 99999999999986 789999999999999999888866543345677778889999999999999999999999774
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-67 Score=522.13 Aligned_cols=344 Identities=21% Similarity=0.278 Sum_probs=310.6
Q ss_pred eeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHH-HHHHHHcCCCC
Q 015289 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS-EACEVLKESPA 123 (409)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~-~~~~~l~g~~~ 123 (409)
.|||++|+++++++|++.||+++.++++.++.++|+|+|++|++||||+.+.+ +++. .+...++ .+.|.++|+++
T Consensus 3 ~mkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~v~v~td~G~~G~Ge~~~~~---~~~~-~~~~~i~~~l~~~l~g~d~ 78 (359)
T 1mdl_A 3 EVLITGLRTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYT---PVAL-KSLKQLLDDMAAMIVNEPL 78 (359)
T ss_dssp CCBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEEECSS---GGGH-HHHHHHHHHHHHHHTTSBS
T ss_pred CCEEEEEEEEEEEcCCCCCccccccccccccEEEEEEEeCCCCEEEEEeecCC---CchH-HHHHHHHHHHHHHHCCCCc
Confidence 49999999999999999999999999999999999999999999999998753 3443 3444555 47899999999
Q ss_pred CCHHHHHHHHHhhcC--C-Ch-hhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCCCHHHHHHHHHHHHH
Q 015289 124 MALGSVFGVVAGLLP--G-HQ-FASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRK 199 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~--g-~~-~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~ 199 (409)
.+++.+ +.+++... + .. .+.+++||||||||+.||..|+|+|+||||.++++|+|.+++..+++++.+.++++++
T Consensus 79 ~~~~~~-~~l~~~~~~~~~~~~~~~a~~aid~Al~Dl~~k~~g~Pl~~llGg~~~~vp~~~~~g~~~~~~~~~~a~~~~~ 157 (359)
T 1mdl_A 79 APVSLE-AMLAKRFCLAGYTGLIRMAAAGIDMAAWDALGKVHETPLVKLLGANARPVQAYDSHSLDGVKLATERAVTAAE 157 (359)
T ss_dssp CHHHHH-HHHHHHTTTTCSSHHHHHHHHHHHHHHHHHHHHHTTCBHHHHTTCCCCCEEEEEECCSCHHHHHHHHHHHHHH
T ss_pred cchHHH-HHHHHHHHhhccCchHHHHHHHHHHHHHHHhhhhcCCcHHHHhCCCCCCeeeeeecCCCCHHHHHHHHHHHHH
Confidence 999998 87765432 2 12 4579999999999999999999999999998889999988776788999999999999
Q ss_pred cCCCeEEEecCC-ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHh
Q 015289 200 QGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 277 (409)
Q Consensus 200 ~Gf~~~KiKvG~-~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l 277 (409)
+||+.+|+|+|. +++.|++++++||++ ++++.|++|+|++|+.++|+++++.|+++++. |||||++++|++++++|
T Consensus 158 ~Gf~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~--~iE~P~~~~~~~~~~~l 235 (359)
T 1mdl_A 158 LGFRAVKTRIGYPALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVT--WIEEPTLQHDYEGHQRI 235 (359)
T ss_dssp TTCSEEEEECCCSSHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHHTCS--CEECCSCTTCHHHHHHH
T ss_pred cCCCEEEEecCCCCHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCCC--eEECCCChhhHHHHHHH
Confidence 999999999996 899999999999997 79999999999999999999999999999874 99999999999999999
Q ss_pred HHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHH
Q 015289 278 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 356 (409)
Q Consensus 278 ~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~h 356 (409)
++ ++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++ ++ +++|
T Consensus 236 ~~----~~~iPI~~de~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i~~~A~~~g~~~~~~~~-~~-----a~~~ 305 (359)
T 1mdl_A 236 QS----KLNVPVQMGENWLGPEEMFKALSIGACRLAMPDAMKIGGVTGWIRASALAQQFGIPMSSHLF-QE-----ISAH 305 (359)
T ss_dssp HH----TCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTTTTHHHHHHHHHHHHHHTTCCBCCBSC-HH-----HHHH
T ss_pred HH----hCCCCEEeCCCCCCHHHHHHHHHcCCCCEEeecchhhCCHHHHHHHHHHHHHcCCeEeeccH-HH-----HHHH
Confidence 75 67899999999999999999999999999999999998 99999999999999999999986 33 8899
Q ss_pred HHccCCCCceeccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 357 LSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 357 laaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
++++++++.++|++ | +.+|++.+++.++||++.+|++||||+++|++.+
T Consensus 306 laaa~~~~~~~e~~-~--~~~d~~~~~~~~~~G~~~~p~~pGlGv~~d~~~l 354 (359)
T 1mdl_A 306 LLAATPTAHWLERL-D--LAGSVIEPTLTFEGGNAVIPDLPGVGIIWREKEI 354 (359)
T ss_dssp HHHTCTTBCCEEEC-C--SSTTTBCCCSEEETTEEECCSSSBTCCCBCHHHH
T ss_pred HHHhCCCCcccccC-c--hhhhhccCCceeECCEEECCCCCCCCccCCHHHH
Confidence 99999999999887 5 3678888889999999999999999999999865
|
| >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-67 Score=532.73 Aligned_cols=359 Identities=22% Similarity=0.285 Sum_probs=308.1
Q ss_pred ccccccccceeeeEeEEEEEEEEecCccceeeccce--eeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHH
Q 015289 35 FSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSR--LDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS 112 (409)
Q Consensus 35 ~~~~~~~~~~~mkI~~i~~~~~~~pl~~p~~~a~~~--~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~ 112 (409)
.+++++.-.+.|||++|+++++++|++.||.+|.++ .+.++.++|||+|++|++||||+.+ + ++.+.+...++
T Consensus 28 ~~~~~~~~~~~MkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~v~V~v~td~G~~G~GE~~~--g---~~~~~~~~~i~ 102 (428)
T 3bjs_A 28 KRFTQNSRRHDMKITKINAIPLSYRLPEGKTVTMGVGSTIKRDAIIIRVETSEGITGYGEAHP--G---RSPGAITSLIH 102 (428)
T ss_dssp -----------CBEEEEEEEEEEEECC---CCBCSSCBCSEEEEEEEEEEETTSCEEEEEECC--T---TCHHHHHHHHH
T ss_pred cccccCCCCCCCEEeEEEEEEEecccCCcccccccccccccccEEEEEEEECCCCEEEEEecC--C---CCHHHHHHHHH
Confidence 456655556779999999999999999999999998 8889999999999999999999986 2 34444444555
Q ss_pred H-HHHHHcCCCCCCHHHHHHHHHhhcC---CC--hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeec---
Q 015289 113 E-ACEVLKESPAMALGSVFGVVAGLLP---GH--QFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIP--- 183 (409)
Q Consensus 113 ~-~~~~l~g~~~~~~~~~~~~~~~~~~---g~--~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~--- 183 (409)
+ +.|.|+|+++.+++.+++.+.+... +. ....|++||||||||+.||..|+|+|+||||.++++|+|.+ +
T Consensus 103 ~~l~p~liG~d~~~~~~i~~~l~~~~~~~~~~~g~~~~A~~aid~AlwDl~gk~~g~Pl~~lLGg~~~~vp~~~s-g~~~ 181 (428)
T 3bjs_A 103 NTIAPMLIGMKATDCVGAWQRVHRMQLSSHGLGAGAALAISGIDMALWDIRGKAANMPLYELLGGSKRRIPAYAG-GIAL 181 (428)
T ss_dssp HTTTTTTTTSBTTCHHHHHHHHHHHTTTTTSCTHHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCCCCEEEEEE-SSCS
T ss_pred HHHHHHhCCCCccCHHHHHHHHHHhhhhccCCcchHHHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCceeeeee-cccc
Confidence 4 7899999999999999999865322 21 13579999999999999999999999999998779999976 3
Q ss_pred CCCH-HHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCce
Q 015289 184 IVSP-AEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261 (409)
Q Consensus 184 ~~~~-~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~ 261 (409)
..++ +++.+.+++++++||+++|+|+|.+++.|++++++||++ ++++.|++|+|++|+.++|+++++.|+++++. |
T Consensus 182 ~~~~~e~~~~~a~~~~~~Gf~~vKik~g~~~~~d~e~v~avR~avG~d~~l~vDan~~~~~~eai~~~~~L~~~~i~--~ 259 (428)
T 3bjs_A 182 GYQPKESLAEEAQEYIARGYKALKLRIGDAARVDIERVRHVRKVLGDEVDILTDANTAYTMADARRVLPVLAEIQAG--W 259 (428)
T ss_dssp CSCCHHHHHHHHHHHHHHTCSEEEEECCSCHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTCS--C
T ss_pred CCChHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCC--E
Confidence 3578 999999999999999999999998899999999999997 89999999999999999999999999999974 9
Q ss_pred eecCCCCCCHHHHHHhHHHhhccCC-CeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcE
Q 015289 262 FEQPVHRDDWEGLGHVSHIAKDKFG-VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNL 339 (409)
Q Consensus 262 iEeP~~~~d~~~~~~l~~~~~~~~~-ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~ 339 (409)
||||++++|++++++|++ +++ +||++||+++++.+++++++.+++|++|+|++++| ++++++++++|+++|+++
T Consensus 260 iEqP~~~~d~~~~~~l~~----~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGitea~~ia~~A~~~gi~~ 335 (428)
T 3bjs_A 260 LEEPFACNDFASYREVAK----ITPLVPIAAGENHYTRFEFGQMLDAGAVQVWQPDLSKCGGITEGIRIAAMASAYRIPI 335 (428)
T ss_dssp EECCSCTTCHHHHHHHTT----TCSSSCEEECTTCCSHHHHHHHHTTCCEEEECCBTTTSSCHHHHHHHHHHHHHTTCCB
T ss_pred EECCCCccCHHHHHHHHH----hCCCCcEEcCCCcCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeE
Confidence 999999999999999863 678 99999999999999999999999999999999997 999999999999999999
Q ss_pred EEccCCchHHHHHHHHHHHccCCCCceeccc----cccccccCCCCCCee-eeCcEEecCCCCCcccccCCCCcC
Q 015289 340 MIGGMVETRLAMGFAGHLSAGLGCFKFIDLD----TPLLLSEDPVLDGYE-VSGAVYKFTNARGHGGFLHWDNIA 409 (409)
Q Consensus 340 ~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~----~p~~~~~d~~~~~~~-~~~G~i~~p~~PGlG~~~d~d~~~ 409 (409)
++| +.||++++++++|++++++|+.+.|++ .| +. +++.++++ ++||++.+|++||||+++|++.++
T Consensus 336 ~~~-~~es~i~~~a~~hlaaa~~~~~~~E~~~~~~~~--~~-~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~ 406 (428)
T 3bjs_A 336 NAH-SSATGLNHAATIHFLAATENAGYFEACVSKFNP--FR-DMFGTSFEIGADGCVEPPDAPGLGIEVDESIFE 406 (428)
T ss_dssp CCB-CCSSHHHHHHHHHHHHHCTTBCCEEEECCSSCT--TT-STTTC-CCCCTTSEECCCCSSBTCCCCCGGGTT
T ss_pred Eec-CCCcHHHHHHHHHHHHhCCCccceecccccccc--HH-HhccCCCeeeeCCEEECCCCCCCCCeECHHHHH
Confidence 999 889999999999999999997766532 44 23 36677788 899999999999999999999874
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-67 Score=526.35 Aligned_cols=343 Identities=21% Similarity=0.264 Sum_probs=308.3
Q ss_pred eeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHcCCCC
Q 015289 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPA 123 (409)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~ 123 (409)
.|||++|+++++++|++.||+++.++.+.++.++|||+|++|.+||||+.. .++ .+...+++ ++|.|+|+++
T Consensus 3 ~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~g-----~~~--~~~~~i~~~l~~~l~G~d~ 75 (382)
T 2gdq_A 3 LVKIVRIETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGIDGWGECVD-----WLP--ALHVGFTKRIIPFLLGKQA 75 (382)
T ss_dssp CCBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECS-----CHH--HHHHHHHHTHHHHHTTSBT
T ss_pred CCEEEEEEEEEEecccCcccccccceeccCcEEEEEEEECCCCEEEEeecC-----chH--HHHHHHHHHHHHHhcCCCc
Confidence 499999999999999999999999999999999999999999999999972 222 23344565 8899999999
Q ss_pred CCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeec--CCCH---HHHHHHHHHH
Q 015289 124 MALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIP--IVSP---AEAAELASKY 197 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~--~~~~---~~~~~~~~~~ 197 (409)
.+++.+|+.+.+.. +.+++||||||||+.||..|+|+|+||||. ++++|+|.+.+ ..++ +++.+.++++
T Consensus 76 ~~~~~~~~~l~~~~-----~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~vp~~~~~g~~~~~~~~~e~~~~~a~~~ 150 (382)
T 2gdq_A 76 GSRLSLVRTIQKWH-----QRAASAVSMALTEIAAKAADCSVCELWGGRYREEIPVYASFQSYSDSPQWISRSVSNVEAQ 150 (382)
T ss_dssp TCHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHHTTSBHHHHTTCCSCSEEEEEEECCCBCSSTTHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCceeEEEEecccCCCcccHHHHHHHHHHH
Confidence 99999999886542 468999999999999999999999999997 67999997653 3678 9999999999
Q ss_pred HHcCCCeEEEecCC-ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhC-CCCCceeecCCCCCCHHHH
Q 015289 198 RKQGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEM-GVTPVLFEQPVHRDDWEGL 274 (409)
Q Consensus 198 ~~~Gf~~~KiKvG~-~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~-~l~~~~iEeP~~~~d~~~~ 274 (409)
+++||+++|+|+|. +++.|++++++||++ ++++.|++|+|++|+.++|+++++.|+++ ++ .|||||++++|++++
T Consensus 151 ~~~Gf~~vKik~g~~~~~~d~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~~i--~~iEqP~~~~d~~~~ 228 (382)
T 2gdq_A 151 LKKGFEQIKVKIGGTSFKEDVRHINALQHTAGSSITMILDANQSYDAAAAFKWERYFSEWTNI--GWLEEPLPFDQPQDY 228 (382)
T ss_dssp HTTTCCEEEEECSSSCHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHTTHHHHTTCSCE--EEEECCSCSSCHHHH
T ss_pred HHcCCCEEEEcCCCCCHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHhhccCC--eEEECCCCcccHHHH
Confidence 99999999999996 899999999999997 89999999999999999999999999999 86 599999999999999
Q ss_pred HHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHH
Q 015289 275 GHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGF 353 (409)
Q Consensus 275 ~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~ 353 (409)
++|++ ++++||++||+++++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++| +.+|+++.++
T Consensus 229 ~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~-~~es~i~~~a 303 (382)
T 2gdq_A 229 AMLRS----RLSVPVAGGENMKGPAQYVPLLSQRCLDIIQPDVMHVNGIDEFRDCLQLARYFGVRASAH-AYDGSLSRLY 303 (382)
T ss_dssp HHHHT----TCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHHHTCEECCC-CSSCSHHHHH
T ss_pred HHHHh----hCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEeec-CCCcHHHHHH
Confidence 99874 67899999999999999999999999999999999998 999999999999999999999 8899999999
Q ss_pred HHHHHccCCCCc-e-eccccccccccCCCCCCee------eeCcEEecCCCCCcccccCCCCc
Q 015289 354 AGHLSAGLGCFK-F-IDLDTPLLLSEDPVLDGYE------VSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 354 ~~hlaaa~~~~~-~-~e~~~p~~~~~d~~~~~~~------~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
++|++++++|+. + .+.++| +.+|++.+++. ++||++.+|++||||+++|++.+
T Consensus 304 ~l~laa~~~~~~e~~~d~~~~--~~~d~~~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 364 (382)
T 2gdq_A 304 ALFAQACLPPWSKMKNDHIEP--IEWDVMENPFTDLVSLQPSKGMVHIPKGKGIGTEINMEIV 364 (382)
T ss_dssp HHHHHHTSCCSSSCTTSCSCC--EEEECSSCGGGGGBCCCCBTTEEECCCSSBTSSCBCHHHH
T ss_pred HHHHHHhCchHhhcccccccc--HHHHHhcccccccccccccCCEEECCCCCCCCceeCHHHH
Confidence 999999999832 1 122244 35788888888 89999999999999999999865
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-67 Score=521.36 Aligned_cols=345 Identities=20% Similarity=0.299 Sum_probs=307.0
Q ss_pred eeEeEEEEEEEEecCccceeecccee-eeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHH-HHHHHHcCCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRL-DQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS-EACEVLKESPA 123 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~-~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~-~~~~~l~g~~~ 123 (409)
|||++|+++++++|++.||+++.+++ +.++.++|||+|++|++||||+.+.+ +..+.+...++ .++|.|+|+++
T Consensus 2 ~kI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~~V~v~td~G~~G~Ge~~~~g----~~~~~~~~~i~~~l~~~l~G~d~ 77 (371)
T 2ovl_A 2 SLIERVRTDLYRIPLPTRLTDSTHGAMMDFELITVRIEDSDGATGLGYTYTVN----HGGAAVATMVDKDLRGCLLGADA 77 (371)
T ss_dssp -CEEEEEEEEEEEEEEEEEBCTTTCCEEEEEEEEEEEEETTSCEEEEEEEEES----SSHHHHHHHHHHTTHHHHTTSCT
T ss_pred CceEEEEEEEEeccCCCCCccccccccCcceEEEEEEEECCCCEEEEeecCCC----CchHHHHHHHHHHHHHHhcCCCc
Confidence 79999999999999999999999988 89999999999999999999998642 22223333344 37899999999
Q ss_pred CCHHHHHHHHHhhcCC----ChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecC--CCHHHHHHHHHHH
Q 015289 124 MALGSVFGVVAGLLPG----HQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI--VSPAEAAELASKY 197 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~g----~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~--~~~~~~~~~~~~~ 197 (409)
.+++.+|+.+.+...+ ...+.|++||||||||+.||..|+|+|+||||.++++|+|.+.+. .+++++.+.++++
T Consensus 78 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~v~~y~~~~~~~~~~e~~~~~a~~~ 157 (371)
T 2ovl_A 78 EQIEKIWQSMWWRLHYAGRGGHATSAISAVDIALWDLKGIRARTPLWKLFGGYDPVVPVYAGGIDLELPVADLKTQADRF 157 (371)
T ss_dssp TCHHHHHHHHHHHTCTTCSSTHHHHHHHHHHHHHHHHHHHHTTSBHHHHTTCCCSEEEEEEECCBTTSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeeEEEeCCCcCCCHHHHHHHHHHH
Confidence 9999999998765432 123578999999999999999999999999999889999988654 3899999999999
Q ss_pred HHcCCCeEEEecCC-ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHH
Q 015289 198 RKQGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLG 275 (409)
Q Consensus 198 ~~~Gf~~~KiKvG~-~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~ 275 (409)
+++||+.+|+|+|. +++.|++++++||++ ++++.|++|+|++|+.++|+++++.|+++++. |||||++++|+++++
T Consensus 158 ~~~Gf~~iKik~g~~~~~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~--~iEqP~~~~d~~~~~ 235 (371)
T 2ovl_A 158 LAGGFRAIKMKVGRPDLKEDVDRVSALREHLGDSFPLMVDANMKWTVDGAIRAARALAPFDLH--WIEEPTIPDDLVGNA 235 (371)
T ss_dssp HHTTCSCEEEECCCSSHHHHHHHHHHHHHHHCTTSCEEEECTTCSCHHHHHHHHHHHGGGCCS--EEECCSCTTCHHHHH
T ss_pred HHcCCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCC--EEECCCCcccHHHHH
Confidence 99999999999996 899999999999997 89999999999999999999999999999874 999999999999999
Q ss_pred HhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHH
Q 015289 276 HVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFA 354 (409)
Q Consensus 276 ~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~ 354 (409)
+|++ ++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++||+.+ ++
T Consensus 236 ~l~~----~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i~~~A~~~gi~~~~h~~~~------a~ 305 (371)
T 2ovl_A 236 RIVR----ESGHTIAGGENLHTLYDFHNAVRAGSLTLPEPDVSNIGGYTTFRKVAALAEANNMLLTSHGVHD------LT 305 (371)
T ss_dssp HHHH----HHCSCEEECTTCCSHHHHHHHHHHTCCSEECCCTTTTTSHHHHHHHHHHHHHTTCCEEECSCHH------HH
T ss_pred HHHh----hCCCCEEeCCCCCCHHHHHHHHHcCCCCEEeeCccccCCHHHHHHHHHHHHHcCCeEccccHHH------HH
Confidence 9975 56899999999999999999999999999999999997 9999999999999999999999843 78
Q ss_pred HHHHccCCCCceeccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 355 GHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 355 ~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
+|++++++++.++|++ ++ +.++++.++++++||++.+|++||||+++|++.+
T Consensus 306 ~hlaaa~~~~~~~e~~-~~-~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 357 (371)
T 2ovl_A 306 VHALASVPHRTYMEAH-GF-GLHAYMAEPMAVTDGCVSAPDRPGHGVVLDFERL 357 (371)
T ss_dssp HHHHTSCTTEEEEECC-----CGGGBSSCCCCBTTEEECCCSSBTCCCBCHHHH
T ss_pred HHHHhhCCCCcccccC-hH-HHHHhccCCCeeeCCEEECCCCCCCCCccCHHHH
Confidence 9999999999888875 22 3567777888899999999999999999999865
|
| >3ijl_A Muconate cycloisomerase; enolase superfamily, dipeptide epimerase, L-Pro-D-Glu, nonpr binding; HET: DGL; 1.50A {Bacteroides thetaiotaomicron} PDB: 3iji_A* 3ijq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-68 Score=524.59 Aligned_cols=332 Identities=29% Similarity=0.437 Sum_probs=296.4
Q ss_pred EEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCC-CCCCHHH
Q 015289 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKES-PAMALGS 128 (409)
Q Consensus 50 ~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~-~~~~~~~ 128 (409)
+++++++++||+.||+++.++.+.++.++||| |++|++||||+.+.++ .+|+...+...++++. ++|+ ++.+++.
T Consensus 2 ~i~~~~~~lpl~~p~~~s~g~~~~~~~~~V~v-td~G~~G~GE~~~~~~-~ge~~~~~~~~l~~~~--l~g~~d~~~~e~ 77 (338)
T 3ijl_A 2 KMTFFPYELKLRHVFTVATYSRTTTPDVQVEI-EYEGVTGYGEASMPPY-LGETVESVMNFLKKVN--LEQFSDPFQLED 77 (338)
T ss_dssp CEEEEECCEEEEEEEEETTEEEEEECEEEEEE-EETTEEEEEEEECCGG-GSCCHHHHHHHHTTCC--CTTCCCTTCHHH
T ss_pred eEEEEEEEEeccCcEEeeCcEEEEeeEEEEEE-EeCCcEEEEeeeCCCC-CCCCHHHHHHHHHHHH--hcCCCCccCHHH
Confidence 46889999999999999999999999999999 8999999999998764 4566665554444332 7888 9999999
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeee-eeecCCCHHHHHHHHHHHHHcCCCeEEE
Q 015289 129 VFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTD-ITIPIVSPAEAAELASKYRKQGFTTLKL 207 (409)
Q Consensus 129 ~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~-~~i~~~~~~~~~~~~~~~~~~Gf~~~Ki 207 (409)
+|+.+++..+++ +.|++||||||||+.||..|+|+|+||||.+++++.| ++++..+++++.++++++++ ||+++|+
T Consensus 78 ~~~~l~~~~~~~--~~A~said~ALwDl~gk~~g~Pl~~LlGg~~~~v~~~~~~~~~~~~e~~~~~a~~~~~-g~~~~K~ 154 (338)
T 3ijl_A 78 ILSYVDSLSPKD--TAAKAAVDIALHDLVGKLLGAPWYKIWGLNKEKTPSTTFTIGIDTPDVVRAKTKECAG-LFNILKV 154 (338)
T ss_dssp HHHHHHHTCSCC--HHHHHHHHHHHHHHHHHHHTSBHHHHTTCCGGGCCBBCCBCCCCCHHHHHHHHHHHHT-TCSSEEE
T ss_pred HHHHHHHhccCC--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCcceEEEEEeCCCHHHHHHHHHHHHh-cccEEEE
Confidence 999998765444 5689999999999999999999999999997788854 57788899999999988876 8999999
Q ss_pred ecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCC-HHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCC
Q 015289 208 KVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYK-PQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG 286 (409)
Q Consensus 208 KvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~-~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ 286 (409)
|+|. +.|++++++||++.+ ..|++|+|++|+ +++|++++++|+++++ .|||||++++|++++++|++ +++
T Consensus 155 Kvg~--~~d~~~v~avR~~~~-~~l~vDaN~~~t~~~~A~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~ 225 (338)
T 3ijl_A 155 KLGR--DNDKEMIETIRSVTD-LPIAVDANQGWKDRQYALDMIHWLKEKGI--VMIEQPMPKEQLDDIAWVTQ----QSP 225 (338)
T ss_dssp ECSS--SCHHHHHHHHHTTCC-CCEEEECTTCCCCHHHHHHHHHHHHHTTE--EEEECCSCTTCHHHHHHHHH----TCS
T ss_pred ecCc--HHHHHHHHHHHhhcC-CcEEEECcCCCCCHHHHHHHHHHHhhCCC--CEEECCCCCCcHHHHHHHHh----cCC
Confidence 9997 579999999999864 699999999995 9999999999999986 59999999999999999975 689
Q ss_pred CeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCc
Q 015289 287 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFK 365 (409)
Q Consensus 287 ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~ 365 (409)
+|||+||++++..++++++ +++|++|+|++++| ++++++++++|+++|+++++|||.||++++++++|+++.+ +
T Consensus 226 ipIa~dE~~~~~~~~~~~~--~a~d~i~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~~la~~~---~ 300 (338)
T 3ijl_A 226 LPVFADESLQRLGDVAALK--GAFTGINIKLMKCTGMREAWKMVTLAHALGMRVMVGCMTETSCAISAASQFSPAV---D 300 (338)
T ss_dssp SCEEESTTCCSGGGTGGGB--TTBSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCSCCHHHHHHHHTTGGGC---S
T ss_pred CCEEECCCCCCHHHHHHHH--hhCCEEEecccccCCHHHHHHHHHHHHHcCCEEEecCCcccHHHHHHHHHHhccC---C
Confidence 9999999999999998876 78999999999997 9999999999999999999999999999999999999865 4
Q ss_pred eeccccccccccCCCCCCeeeeCcEEecCCCCCccccc
Q 015289 366 FIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFL 403 (409)
Q Consensus 366 ~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~ 403 (409)
+.++++++.+.+|++.+ ++++||++.+|++||||+++
T Consensus 301 ~~~l~~~~~~~~d~~~~-~~~~~G~i~~p~~PGlGv~l 337 (338)
T 3ijl_A 301 FADLDGNLLISNDRFKG-VEVVNGKITLNDLPGIGVMK 337 (338)
T ss_dssp EECCCGGGGBSCCCCBC-CEEETTEEECCSCSBTCCBC
T ss_pred cccccchhhhhhcccCC-ceeECCEEECCCCCccceee
Confidence 66888888788888875 88999999999999999986
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-67 Score=524.97 Aligned_cols=354 Identities=16% Similarity=0.220 Sum_probs=310.6
Q ss_pred ccccceeeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHH
Q 015289 39 NLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVL 118 (409)
Q Consensus 39 ~~~~~~~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l 118 (409)
|+..+|.|||++|+++.+. |++.|+.++. .++.++|||+|++|++||||+.+.+ ++.+.+. ..++++.|.|
T Consensus 4 ~~~~~~~MkI~~i~~~~~~-p~~~~~~~~~----~~~~~~V~v~td~G~~G~GE~~~~~-~~~~~~~---~~i~~l~p~l 74 (391)
T 2qgy_A 4 NNQDISIGKLSRLKIWITD-NHLSDDQWSN----TKKFIIIKITTEDGIEGWGEAFSIN-FREKGIA---IIIKELFREI 74 (391)
T ss_dssp -CTTCCCCCEEEEEEEEEC-CCBCGGGCSB----CCCCEEEEEEETTCCEEEEEECCCT-TTHHHHH---HHHHHHHHHH
T ss_pred CCCCCCCCEEEEEEEEEec-CccccccccC----CCcEEEEEEEECCCCEEEecccCCC-CChHHHH---HHHHHHHHHh
Confidence 5667788999999999995 7666655443 3568999999999999999998765 3344333 3445688999
Q ss_pred cCCCCCCHHHHHHHHHh-h--cCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeee--eec-CCCHHHHH
Q 015289 119 KESPAMALGSVFGVVAG-L--LPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDI--TIP-IVSPAEAA 191 (409)
Q Consensus 119 ~g~~~~~~~~~~~~~~~-~--~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~--~i~-~~~~~~~~ 191 (409)
+|+++.+++.+|+.+.+ . ..|+..+.+++||||||||+.||..|+|||+||||. ++++|+|. +++ ..+++++.
T Consensus 75 ~G~d~~~~~~i~~~l~~~~~~~~g~~~~~a~~aid~AlwDl~ak~~g~Pl~~llGg~~~~~vp~~~~g~~~~~~~~~~~~ 154 (391)
T 2qgy_A 75 SNIPNLSIKSFYNKISLLSDGHRGLDFSSATSAIEIALWDISGKLKNLPLNSLLTKSPKPNVPIYATCWSDLKKDTNDYL 154 (391)
T ss_dssp TTCTTCCHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHCSSCCSEEEEEEECCCSSCCCHHHHH
T ss_pred cCCChhHHHHHHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHHHhCCcHHHHcCCCcCCCcceEEecccCCCCCHHHHH
Confidence 99999999999998875 2 233222679999999999999999999999999996 56899997 444 56899999
Q ss_pred HHHHHHHHcCCCeEEEecCCC-hhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCC
Q 015289 192 ELASKYRKQGFTTLKLKVGKN-LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRD 269 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG~~-~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~ 269 (409)
+.+++++++||+.+|+|+|.+ ++.|++++++||++ ++++.|++|+|++|+.++|+++++.|+++++. |||||++++
T Consensus 155 ~~a~~~~~~Gf~~vKik~g~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~--~iEqP~~~~ 232 (391)
T 2qgy_A 155 RQIEKFYGKKYGGIKIYPMLDSLSISIQFVEKVREIVGDELPLMLDLAVPEDLDQTKSFLKEVSSFNPY--WIEEPVDGE 232 (391)
T ss_dssp HHHHHHHHTTCSCEEECCCCSSHHHHHHHHHHHHHHHCSSSCEEEECCCCSCHHHHHHHHHHHGGGCCS--EEECSSCTT
T ss_pred HHHHHHHHcCCCEEEEccCCChHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCC--eEeCCCChh
Confidence 999999999999999999977 79999999999997 89999999999999999999999999999874 999999999
Q ss_pred CHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCch-
Q 015289 270 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVET- 347 (409)
Q Consensus 270 d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es- 347 (409)
|++++++|++ ++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++||+ ++
T Consensus 233 d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~gi~~~~~~~-~~~ 307 (391)
T 2qgy_A 233 NISLLTEIKN----TFNMKVVTGEKQSGLVHFRELISRNAADIFNPDISGMGGLIDIIEISNEASNNGIFISPHCW-NSM 307 (391)
T ss_dssp CHHHHHHHHH----HCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTTSSCHHHHHHHHHHHHHTTCEECCBCC-SCT
T ss_pred hHHHHHHHHh----hCCCCEEEcCCcCCHHHHHHHHHcCCCCEEEECcchhCCHHHHHHHHHHHHHCCCEEeccCC-CCc
Confidence 9999999975 57899999999999999999999999999999999998 99999999999999999999999 88
Q ss_pred HHHHHHHHHHHccCCCCceecccc-ccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 348 RLAMGFAGHLSAGLGCFKFIDLDT-PLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 348 ~i~~~~~~hlaaa~~~~~~~e~~~-p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
++++++++|++++++|+.++|++. +..+.+|++.++++++||++.+|++||||+++|++.+
T Consensus 308 ~i~~aa~~hlaaa~~~~~~~e~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 369 (391)
T 2qgy_A 308 SVSASAMLHVCSSIPNSEKAEIFPDYINFSKKFCELPFDIIDNKAHINKSAGLGIVIHEDIL 369 (391)
T ss_dssp THHHHHHHHHHHHCTTBCCEEECGGGHHHHHTTBCCSEEEETTEEEECCSSBTCCCBCHHHH
T ss_pred HHHHHHHHHHHHhCCCCceEeecCccchhhHHHhcCCceeeCCEEECCCCCcCCccCCHHHH
Confidence 999999999999999999998765 2333478888889999999999999999999999865
|
| >3v5c_A Mandelate racemase/muconate lactonizing protein; enolase fold, galacturonate dehydratase, double Mg site, LYA; 1.53A {Paenibacillus SP} PDB: 3v5f_A* 3p3b_A* 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-67 Score=529.77 Aligned_cols=335 Identities=21% Similarity=0.241 Sum_probs=290.5
Q ss_pred eeeeEeEEEEEEEEecCccceeec--ccee-eeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcC
Q 015289 44 FTVDVQRAENRPLNVPLIAPFTIA--TSRL-DQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKE 120 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p~~~a--~~~~-~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g 120 (409)
-.|||++|+++++++|++.||.++ .|.. +.++.++|||+|| |++||||+.+.. +++.|.|+|
T Consensus 10 ~~mkI~~i~~~~v~~pl~~~f~~s~~~g~~~~~~~~~~V~i~td-G~~G~GE~~~~~--------------~~l~~~liG 74 (392)
T 3v5c_A 10 SDWKVEKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITID-GQTGYGSSIHMT--------------PEWAEDVIG 74 (392)
T ss_dssp TTCBEEEEEEEEEEEEEEEEECBCSSSCCCEEEEEEEEEEEEET-TEEEEEECCSCC--------------HHHHHTTTT
T ss_pred cCcEEEEEEEEEEeeecCcccccccccCccCCCceeEEEEEEEc-CCEEEEeecCcH--------------HHHHHHhCC
Confidence 369999999999999999999964 7777 5789999999999 999999998631 246789999
Q ss_pred CCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCC-e-----eeeeee-ecCC--------
Q 015289 121 SPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSN-T-----ITTDIT-IPIV-------- 185 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~-~-----i~~~~~-i~~~-------- 185 (409)
+++.++.. ..+.....|++|||||||||+||.+|+|||+||||+.+ + |++|.+ ++..
T Consensus 75 ~d~~~~~~--------~~~~~~~~A~aaiD~ALwDl~gK~~g~Pv~~LLGG~~r~~~~~v~v~~y~~~~~~~~~~~~~~~ 146 (392)
T 3v5c_A 75 RRLLDLFD--------DRGRLREAYRLQLEYPVLDWLGQRQGKPVYDLVSGAHLETGASLVVPCYDTSLYFDDLHLADER 146 (392)
T ss_dssp CBGGGGBC--------TTSCBCGGGHHHHHHHHHHHHHHHHTCBHHHHHSCCCSCCCCCEEEEEEEEEECBTTTTCCCHH
T ss_pred CCHHHHHh--------hccchHHHHHHHHHHHHHHHHHHHhCCcHHHHcCCCCCcccccceEEEEEeecccccccccccc
Confidence 99875421 12223346899999999999999999999999999865 4 888864 3332
Q ss_pred -CHHHHHHHHHHHHHcCCCeEEEecCCC---------hhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHh
Q 015289 186 -SPAEAAELASKYRKQGFTTLKLKVGKN---------LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE 254 (409)
Q Consensus 186 -~~~~~~~~~~~~~~~Gf~~~KiKvG~~---------~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~ 254 (409)
+++++.+++++++++||++||+|+|.+ +++|++++++||++ +|++.|++|+|++|++++|+++++.|++
T Consensus 147 ~~~e~~~~~a~~~~~~Gf~~~KlKvg~~~~~~~~~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~w~~~~A~~~~~~L~~ 226 (392)
T 3v5c_A 147 AAVALMQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSD 226 (392)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEECCTTTTTSCHHHHHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECCCCCCccccccccHHHHHHHHHHHHHHcCCCCcEEeeCCCCcCHHHHHHHHHhccc
Confidence 356778888889999999999999963 68999999999996 9999999999999999999999999999
Q ss_pred CCCCCceeecCCCCCCHHHHHHhHHHhh-ccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHH
Q 015289 255 MGVTPVLFEQPVHRDDWEGLGHVSHIAK-DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVR 333 (409)
Q Consensus 255 ~~l~~~~iEeP~~~~d~~~~~~l~~~~~-~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~ 333 (409)
+++ .|||||++ +|++++++|++.++ ..+.+|||+||+++ .++++++++.+++|++|+|+++.|++++++++++|+
T Consensus 227 ~~l--~~iEeP~~-~d~~~~~~l~~~~~~~~~~ipIa~gE~~~-~~~~~~li~~~a~dii~~d~~~GGitea~kia~~A~ 302 (392)
T 3v5c_A 227 VNL--YWLEAAFH-EDEALYEDLKEWLGQRGQNVLIADGEGLA-SPHLIEWATRGRVDVLQYDIIWPGFTHWMELGEKLD 302 (392)
T ss_dssp SCC--CEEECSSS-CCHHHHHHHHHHHHHHTCCCEEEECCSSC-CTTHHHHHHTTSCCEECCBTTTBCHHHHHHHHHHHH
T ss_pred CCC--eEEeCCCC-cCHHHHHHHHHhhccCCCCCcEECCCccc-HHHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHH
Confidence 987 49999998 68999999875321 12689999999999 889999999999999999999944999999999999
Q ss_pred HcCCcEEEccCCchHHHHHHHHHHHccCCCCceeccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 334 ASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 334 ~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
++|+++++||+ ++++++++++||++++||+.+.|++.++ .+++..++++++||++.+|++||||+++|+|.|
T Consensus 303 ~~gv~~~~h~~-~s~i~~aa~~hlaaa~p~~~~~e~~~~~--~~~~~~~~~~~~~G~i~vp~~PGlGve~d~~~l 374 (392)
T 3v5c_A 303 AHGLRSAPHCY-GNAYGIYASGHLSAAVRNFEFVEYDDIT--IEGMDVSGYRIENGEIHVPATPGFGIVFDDELV 374 (392)
T ss_dssp HTTCEECCBCC-SCTHHHHHHHHHGGGCTTBCCEEECCEE--ETTEECTTCEEETTEEEECCSSBTSCEECHHHH
T ss_pred HcCCeEEecCC-CcHHHHHHHHHHHHhCCCCceEecccch--hhhccCCCCeeECCEEECCCCCCCCccCCHHHH
Confidence 99999999998 8999999999999999999999987654 345556788999999999999999999999876
|
| >3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-67 Score=527.71 Aligned_cols=335 Identities=18% Similarity=0.236 Sum_probs=290.8
Q ss_pred eeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCC
Q 015289 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAM 124 (409)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~ 124 (409)
.|||++|+++.+ | . +.++|||+||+|++||||+.+.. +.+... ..++.+.|.|+|++|.
T Consensus 1 mMkIt~i~~~~~--~--~------------~~~~V~v~td~G~~G~GE~~~~g--~~~~~~---~~i~~l~p~liG~dp~ 59 (405)
T 3rr1_A 1 MVKITRLTTYRL--P--P------------RWMFLKVETDEGVTGWGEPVIEG--RARTVE---AAVHELSDYLIGQDPS 59 (405)
T ss_dssp CCCEEEEEEEEE--T--T------------TEEEEEEEETTSCEEEECCCCTT--CHHHHH---HHHHHHGGGTTTSCTT
T ss_pred CCeEEEEEEEEE--C--C------------CEEEEEEEECCCCEEEEeCCCCC--CHHHHH---HHHHHHHHHHCCCCcc
Confidence 399999999887 2 1 23899999999999999998642 233332 3345689999999999
Q ss_pred CHHHHHHHHHhh--cCCC-hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHHc
Q 015289 125 ALGSVFGVVAGL--LPGH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQ 200 (409)
Q Consensus 125 ~~~~~~~~~~~~--~~g~-~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~ 200 (409)
+++.+|+.+++. .+|. ....|+|||||||||++||.+|+|||+||||. +++||+|.+++..+++++.+.+++++++
T Consensus 60 ~~e~~~~~l~~~~~~~g~~~~~~A~said~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~e~~~~~a~~~~~~ 139 (405)
T 3rr1_A 60 RINDLWQTMYRAGFYRGGPILMSAIAGIDQALWDIKGKVLGVPVYELLGGLVRDKMRTYSWVGGDRPADVIAGMKALQAG 139 (405)
T ss_dssp CHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSCEEEEEECCCSSHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHhhcccCCchHHHHHHHHHHHHHHHHHHHhCCcHHHHhCccccCceeeeEeCCCCCHHHHHHHHHHHHHc
Confidence 999999999873 3332 24568999999999999999999999999997 5689999999999999999999999999
Q ss_pred CCCeEEEecCC----------ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCC
Q 015289 201 GFTTLKLKVGK----------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRD 269 (409)
Q Consensus 201 Gf~~~KiKvG~----------~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~ 269 (409)
||++||+ +|. ++++|++++++||++ ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++
T Consensus 140 G~~~iKl-~G~~~~~~~~~~~~~~~d~e~v~avR~avG~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i--~~iEeP~~~~ 216 (405)
T 3rr1_A 140 GFDHFKL-NGCEEMGIIDTSRAVDAAVARVAEIRSAFGNTVEFGLDFHGRVSAPMAKVLIKELEPYRP--LFIEEPVLAE 216 (405)
T ss_dssp TCCEEEE-ESCCSSSCBCSHHHHHHHHHHHHHHHHTTGGGSEEEEECCSCBCHHHHHHHHHHHGGGCC--SCEECSSCCS
T ss_pred CCCEEEE-ecCCcccccccchhHHHHHHHHHHHHHHhCCCceEEEECCCCCCHHHHHHHHHHHHhcCC--CEEECCCCcc
Confidence 9999999 774 367899999999998 6999999999999999999999999999987 4999999999
Q ss_pred CHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchH
Q 015289 270 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETR 348 (409)
Q Consensus 270 d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~ 348 (409)
|++++++|++ ++++||++||+++++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++||+ +|+
T Consensus 217 d~~~~~~l~~----~~~iPIa~dE~i~~~~~~~~~l~~~a~d~v~~d~~~~GGitea~kia~lA~~~gi~v~~h~~-~s~ 291 (405)
T 3rr1_A 217 QAETYARLAA----HTHLPIAAGERMFSRFDFKRVLEAGGVSILQPDLSHAGGITECVKIAAMAEAYDVALAPHCP-LGP 291 (405)
T ss_dssp STHHHHHHHT----TCSSCEEECTTCCSHHHHHHHHHHCCCSEECCBTTTTTHHHHHHHHHHHHHTTTCEECCBCC-SCH
T ss_pred cHHHHHHHHh----cCCCCEEecCCcCCHHHHHHHHHHhCCCeEEEChhhcCCHHHHHHHHHHHHHcCCEEEeCCC-CcH
Confidence 9999999874 68999999999999999999999999999999999998 99999999999999999999987 799
Q ss_pred HHHHHHHHHHccCCCCceeccc--cccccccCCCC-----CCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 349 LAMGFAGHLSAGLGCFKFIDLD--TPLLLSEDPVL-----DGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 349 i~~~~~~hlaaa~~~~~~~e~~--~p~~~~~d~~~-----~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
+++++++|++++++|+.+.|+. .++.+.+|++. ++++++||++.+|++||||+++|++.|
T Consensus 292 i~~aa~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~vp~~PGLGveld~~~l 358 (405)
T 3rr1_A 292 IALAACLHVDFVSWNATLQEQSMGIHYNKGAELLDYVRNKADFALEGGYIRPPRLPGLGVDIDEALV 358 (405)
T ss_dssp HHHHHHHHHHHHCTTBCCEEECC--------CGGGGBSCGGGGCEETTEECCCCSSBTSCCBCHHHH
T ss_pred HHHHHHHHHHHhCCCceeeeeccccccccchhhhhhcccCCCceeeCCEEECCCCCcCCcccCHHHH
Confidence 9999999999999999777643 22223344443 257899999999999999999999875
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-67 Score=526.19 Aligned_cols=349 Identities=16% Similarity=0.204 Sum_probs=311.7
Q ss_pred eeeeEeEEEEEEEEecCcc--------------------ceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCccc
Q 015289 44 FTVDVQRAENRPLNVPLIA--------------------PFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAED 103 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~--------------------p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~ 103 (409)
|+|||++|+++++++|++. ||+++.++.+.+ .++|+|+|++|++||||+.+.. +++
T Consensus 1 m~mkI~~i~~~~~~~pl~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~-~~~V~v~td~G~~G~GE~~~~~---~~~ 76 (388)
T 2nql_A 1 MNSPIATVEVFTLTQPRKVPYLGALREGEVVNPNGYIVRKGNRTVYPTFDR-SVLVRMTTEAGTVGWGETYGIV---APG 76 (388)
T ss_dssp CCCCEEEEEEEEEEECCCSCCGGGCCSCCCCBGGGEEECTTTCCEEESSEE-EEEEEEEETTCCEEEEEEECSS---CHH
T ss_pred CCceEeEEEEEEEeccCcccccccccccccccccccccCCccccccCccce-EEEEEEEECCCCEEEEEecCCC---CcH
Confidence 5699999999999999999 999998888888 9999999999999999998752 333
Q ss_pred HHHHHHHHHH-HHHHHcCCCCCCHHHHHHHHHh--h-cCC-Ch-hhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeee
Q 015289 104 QQTAMVKASE-ACEVLKESPAMALGSVFGVVAG--L-LPG-HQ-FASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTIT 177 (409)
Q Consensus 104 ~~~~~~~~~~-~~~~l~g~~~~~~~~~~~~~~~--~-~~g-~~-~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~ 177 (409)
.....+++ ++|.|+|+++.+++.+|+.+++ . ..+ .. .+.+++||||||||+.||..|+|+|+||||.++++|
T Consensus 77 --~~~~~i~~~l~~~l~G~d~~~~~~i~~~l~~~~~~~~~~~~~~~~a~~aid~AlwDl~ak~~g~Pl~~llGg~~~~vp 154 (388)
T 2nql_A 77 --AVAALINDLLAGFVIGRDASDPSAVYDDLYDMMRVRGYTGGFYVDALAALDIALWDIAGQEAGKSIRDLLGGGVDSFP 154 (388)
T ss_dssp --HHHHHHHHTHHHHHTTCCSSSHHHHHHHHHHHHGGGTCSSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCCSEEE
T ss_pred --HHHHHHHHHHHHHhcCCCcccHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceE
Confidence 33344554 8899999999999999999844 2 222 22 467999999999999999999999999999878999
Q ss_pred eeeeec-CCCHHHHHHHHHHHHHcCCCeEEEecCC-ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHh
Q 015289 178 TDITIP-IVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE 254 (409)
Q Consensus 178 ~~~~i~-~~~~~~~~~~~~~~~~~Gf~~~KiKvG~-~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~ 254 (409)
+|.+++ ..+++++.+.+++++++||+.+|+|+|. +++. ++++++||++ ++++.|++|+|++|+.++|+++++.|++
T Consensus 155 ~~~~~g~~~~~e~~~~~a~~~~~~Gf~~vKik~g~~~~~~-~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~ 233 (388)
T 2nql_A 155 AYVSGLPERTLKARGELAKYWQDRGFNAFKFATPVADDGP-AAEIANLRQVLGPQAKIAADMHWNQTPERALELIAEMQP 233 (388)
T ss_dssp EEEECCCCSSHHHHHHHHHHHHHTTCCEEEEEGGGCTTCH-HHHHHHHHHHHCTTSEEEEECCSCSCHHHHHHHHHHHGG
T ss_pred eeEEeCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCCChHH-HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhh
Confidence 999886 4689999999999999999999999995 7888 9999999996 8999999999999999999999999999
Q ss_pred CCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHH
Q 015289 255 MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVR 333 (409)
Q Consensus 255 ~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~ 333 (409)
+++. |||||++++|++++++|++ ++++||++||+++++++++++++.+++|++|+|+++ | ++++++++++|+
T Consensus 234 ~~i~--~iEqP~~~~d~~~~~~l~~----~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~-GGit~~~~i~~~A~ 306 (388)
T 2nql_A 234 FDPW--FAEAPVWTEDIAGLEKVSK----NTDVPIAVGEEWRTHWDMRARIERCRIAIVQPEMGH-KGITNFIRIGALAA 306 (388)
T ss_dssp GCCS--CEECCSCTTCHHHHHHHHT----SCCSCEEECTTCCSHHHHHHHHTTSCCSEECCCHHH-HCHHHHHHHHHHHH
T ss_pred cCCC--EEECCCChhhHHHHHHHHh----hCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEecCCC-CCHHHHHHHHHHHH
Confidence 9874 9999999999999999874 678999999999999999999999999999999999 9 999999999999
Q ss_pred HcCCcEEEccCCchHHHHHHHHHHHccCCCC--cee-ccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 334 ASGLNLMIGGMVETRLAMGFAGHLSAGLGCF--KFI-DLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 334 ~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~--~~~-e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
++|+++++|||+||+++.++++|++++++|+ +|. ++++| +.+|++.++++++||++.+|++||||+++|++.+
T Consensus 307 ~~g~~~~~h~~~es~i~~aa~~hlaa~~~~~~~e~~~d~~~~--~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 382 (388)
T 2nql_A 307 EHGIDVIPHATVGAGIFLAASLQASSTLSMLKGHEFQHSIFE--PNRRLLDGDMDCREGRYHLPSGPGLGVRPSEAAL 382 (388)
T ss_dssp HHTCEECCCCCSSCSHHHHHHHHHHTTCTTBCCEEECHHHHT--GGGGGEESCCEEETTEEECCCSSBTSCEECHHHH
T ss_pred HcCCeEEeecCCCcHHHHHHHHHHHHhCCchhhhccccccch--HHHHhccCCCcccCCEEECCCCCCCCceECHHHH
Confidence 9999999999999999999999999999986 232 33445 3678887888999999999999999999999865
|
| >3cyj_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, isomerase, PSI-2; 2.30A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-67 Score=523.44 Aligned_cols=341 Identities=18% Similarity=0.219 Sum_probs=301.8
Q ss_pred eeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHH-HHHHHHcCCCC
Q 015289 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS-EACEVLKESPA 123 (409)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~-~~~~~l~g~~~ 123 (409)
.|||++|+++++++|++.||+++.++++.++.++|+|+|+ |.+||||+.+ .++. ...++ .++|.|+|+++
T Consensus 5 ~mkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~v~V~v~td-G~~G~Ge~~~-----~~~~---~~~i~~~l~~~l~g~d~ 75 (372)
T 3cyj_A 5 GPRVERLEVSAYTVPTDYPESDGTLQWDSTTMILVEAHGG-GRKGLGYTYG-----DVSV---GRFVESKLAGVAEGSDA 75 (372)
T ss_dssp -CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEET-TEEEEEEEES-----CTHH---HHHHHHHTHHHHTTSBT
T ss_pred CCEEeEEEEEEEeccCCCcccCcccccccccEEEEEEEeC-CcEEEEeccC-----cHHH---HHHHHHHHHHHHcCCCc
Confidence 4999999999999999999999999999999999999999 9999999975 2322 22333 37899999999
Q ss_pred CCHHHHHHHHHhhcCCC----hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCC--CHHHHHHHHHHH
Q 015289 124 MALGSVFGVVAGLLPGH----QFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIV--SPAEAAELASKY 197 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~g~----~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~--~~~~~~~~~~~~ 197 (409)
.+++.+|+.+.+...+. ..+.+++||||||||+.||..|+|+|+||||.++++|+|.+++.. +++++.++++++
T Consensus 76 ~~~~~i~~~l~~~~~~~~~~~~~~~a~~aid~AlwDl~ak~~g~Pl~~llGg~~~~vp~~~~~g~~~~~~~~~~~~a~~~ 155 (372)
T 3cyj_A 76 LSPPAVWARMQAAIRNAGRPGVGAMAVSAVDIALWDLKARLLGLPLADALPRFHAEVPVYGSGGFTSYPLRRLQEQLGGW 155 (372)
T ss_dssp TCHHHHHHHHHHHTTTTCSSBHHHHHHHHHHHHHHHHHHHHTTCBHHHHSCCCCSSEEEEEECCCTTSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhhhHcCCcHHHHhCCCCCCceEEEEcCCCCCCHHHHHHHHHHH
Confidence 99999999987654321 235789999999999999999999999999988899999987765 457788999999
Q ss_pred HHcCCCeEEEecCCChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhC-CCCCceeecCCCCCCHHHHH
Q 015289 198 RKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEM-GVTPVLFEQPVHRDDWEGLG 275 (409)
Q Consensus 198 ~~~Gf~~~KiKvG~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~-~l~~~~iEeP~~~~d~~~~~ 275 (409)
+++||+++|+|+|.++++|++++++||++ ++++.|++|+|++|+.++|+++++.|+++ ++. |||||++++|+++++
T Consensus 156 ~~~G~~~~KiKvG~~~~~d~~~v~avr~a~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~~i~--~iEqP~~~~d~~~~~ 233 (372)
T 3cyj_A 156 AAAGIPRVKMKVGREPEKDPERVRAAREAIGESVELMVDANGAYTRKQALYWAGAFAREAGIS--YLEEPVSSEDREGLR 233 (372)
T ss_dssp HHTTCCEEEEECCSSGGGHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHHHHHCCC--EEECSSCTTCHHHHH
T ss_pred HHcCCCEEEEcCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhhcCCc--EEECCCCcccHHHHH
Confidence 99999999999999999999999999997 89999999999999999999999999999 974 999999999999999
Q ss_pred HhHHHhhccCC--CeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHH
Q 015289 276 HVSHIAKDKFG--VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMG 352 (409)
Q Consensus 276 ~l~~~~~~~~~--ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~ 352 (409)
+|++ +++ +||++||++++..+++++ .+++|++|+|++++| ++++++++++|+++|+++++||+ .+
T Consensus 234 ~l~~----~~~~~ipIa~dE~~~~~~~~~~~--~~a~d~i~ik~~~~GGit~~~~i~~~A~~~gi~~~~~~~------~~ 301 (372)
T 3cyj_A 234 LLRD----RGPGGVAIAAGEYEWTLPQLHDL--AGCVDILQADVTRCGGITGLLRVDGICRGHQIPFSAHCA------PA 301 (372)
T ss_dssp HHHH----HSCTTCEEEECTTCCSHHHHHHH--HTTCSEEEECTTTTTHHHHHTTHHHHHHHHTCCEEECSC------HH
T ss_pred HHHH----hCCCCCCEECCCCccCHHHHHHH--hCCCCEEecCchhhCCHHHHHHHHHHHHHcCCeecccch------HH
Confidence 9975 456 799999999999999998 789999999999998 99999999999999999999998 35
Q ss_pred HHHHHHccCCCCceecccc-ccccccCCCCCCeeeeCcEEecC-CCCCcccccCCCCc
Q 015289 353 FAGHLSAGLGCFKFIDLDT-PLLLSEDPVLDGYEVSGAVYKFT-NARGHGGFLHWDNI 408 (409)
Q Consensus 353 ~~~hlaaa~~~~~~~e~~~-p~~~~~d~~~~~~~~~~G~i~~p-~~PGlG~~~d~d~~ 408 (409)
+++|++++++++.++|+.. +..+.++++.+++.++||++.+| ++||||+++|++.+
T Consensus 302 a~lhlaaa~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~p~~~PGlGv~~d~~~l 359 (372)
T 3cyj_A 302 VSAHACCAVESLLHLEYFHDHARVERLLFDGTLDPEGGSLRPDPDRPGLGLELKRSEA 359 (372)
T ss_dssp HHHHHGGGCTTEEEEEEEHHHHHHHHHHEECCCCCGGGEECCCTTSCBTCCEECHHHH
T ss_pred HHHHHHHhCCCCceeeccCCchhhhhHhhcCCCcccCcEEEcCCCCCcccceECHHHH
Confidence 7899999999988888542 22235666777888999999999 99999999999865
|
| >3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-67 Score=526.95 Aligned_cols=337 Identities=19% Similarity=0.241 Sum_probs=294.1
Q ss_pred eeeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCC
Q 015289 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA 123 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~ 123 (409)
|.|||++|+++.++.+ .++.++|||+||+|++||||+.+. ++.+.... .++.+.|.|+|+++
T Consensus 1 ~~MkI~~i~~~~~~~~-------------~~~~~~V~v~td~G~~G~GE~~~~--~~~~~~~~---~i~~l~p~liG~d~ 62 (409)
T 3go2_A 1 MSLKVVSVDTLCCDAG-------------WRNYHFVKLTTDEGIVGWSEFDEG--FGSPGVTA---VIEQLGKRLVGASV 62 (409)
T ss_dssp -CCBEEEEEEEEEECS-------------SSEEEEEEEEETTCCEEEEEECST--TTCTTHHH---HHHHHHHHHTTSBT
T ss_pred CCCEEEEEEEEEECCC-------------CccEEEEEEEECCCCEEEEeecCC--CCcHHHHH---HHHHHHHHhcCCCh
Confidence 6799999999987542 246899999999999999998753 44454433 23568899999999
Q ss_pred CCHHHHHHHHHhhcC---CChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeee--------------cCC
Q 015289 124 MALGSVFGVVAGLLP---GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITI--------------PIV 185 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~---g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i--------------~~~ 185 (409)
.+++.+|+.+++... +.....|+||||||||||+||.+|+|||+||||. +++||+|++. +..
T Consensus 63 ~~~e~~~~~~~~~~~~~~~g~~~~A~saID~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~s~~~~~~i~~~~~~~~~~~ 142 (409)
T 3go2_A 63 MEHERFFAEAYCLTRPATGGVVSEGIGAIENALLDAKAKTLNVPCYELLGGKLRDRVPVYWSHCPTWRINHPKFFGPPVT 142 (409)
T ss_dssp TCHHHHHHHHHHHHGGGCSHHHHHHHHHHHHHHHHHHHHHHTSBGGGGTTCCSCSEEEEEECSTTHHHHHCTTTSSSCCC
T ss_pred hhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHhHHHcCCcHHHHcCCCCCCeEEEEEeecCccccccccccccCCC
Confidence 999999999976432 2224579999999999999999999999999997 6799999653 346
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEec-------------CCC-------------hhHHHHHHHHHHhh-CCCcEEEEeCCC
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKV-------------GKN-------------LKEDIEVLRAIRAV-HPDSSFILDANE 238 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKv-------------G~~-------------~~~d~~~l~avr~~-~~~~~l~vDaN~ 238 (409)
+++++.+.+++++++||++||+|+ |.+ ++.|++++++||++ ++++.|++|+|+
T Consensus 143 ~~e~~~~~a~~~~~~Gf~~iKlKv~~~~~~~~~~~~pG~~~~~~~~~~~~~~~~~~~~e~v~avR~avG~d~~l~vDaN~ 222 (409)
T 3go2_A 143 DLDGVKRTAEEARERQFRAIKTNIFIHDDGPLHAWRPGFAVPFQPALNVDRKVLRNLRAHLEALRDGAGPDVEILLDLNF 222 (409)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEECCEECSSSSCEECBGGGTBSCCTTCCCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTT
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcccccccccccccccCCCccCCcccccchHHHHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 899999999999999999999999 521 45789999999997 899999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 015289 239 GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (409)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~ 318 (409)
+|+.++|+++++.|+++++. |||||+ +|++++++|++ ++++||++||+++++.+++++++.+++|++|+|++
T Consensus 223 ~~~~~~A~~~~~~L~~~~i~--~iE~P~--~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~ 294 (409)
T 3go2_A 223 NAKPEGYLKILRELADFDLF--WVEIDS--YSPQGLAYVRN----HSPHPISSCETLFGIREFKPFFDANAVDVAIVDTI 294 (409)
T ss_dssp CSCHHHHHHHHHHTTTSCCS--EEECCC--SCHHHHHHHHH----TCSSCEEECTTCCHHHHHHHHHHTTCCSEEEECHH
T ss_pred CCCHHHHHHHHHHHhhcCCe--EEEeCc--CCHHHHHHHHh----hCCCCEEeCCCcCCHHHHHHHHHhCCCCEEEeCCC
Confidence 99999999999999999874 999998 48999999874 68899999999999999999999999999999999
Q ss_pred CCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecccc-ccccccCCCCCCeeeeCcEEecCCC
Q 015289 319 KVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDT-PLLLSEDPVLDGYEVSGAVYKFTNA 396 (409)
Q Consensus 319 ~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~-p~~~~~d~~~~~~~~~~G~i~~p~~ 396 (409)
+ | ++++++++++|+++|+++++|+ ++|+++.++++||++++||+.++|++. +..+.+|++.++++++||++.+|++
T Consensus 295 ~-GGit~~~~ia~~A~~~gi~~~~h~-~~s~i~~aa~~hlaaa~p~~~~~E~~~~~~~~~~d~~~~~~~~~~G~i~~p~~ 372 (409)
T 3go2_A 295 W-NGVWQSMKIAAFADAHDINVAPHN-FYGHLCTMINANFAAAVPNLRIMETDIDRLAWEDELFTHAPEYQNGELIIPDR 372 (409)
T ss_dssp H-HCHHHHHHHHHHHHHTTCEEEECC-CSCHHHHHHHHHHHHHCSSBCCEEECCCCCTTHHHHBSCCCCEETTEEECCCS
T ss_pred C-CCHHHHHHHHHHHHHcCCEEeecC-CCcHHHHHHHHHHHHcCCCCeEEEeeCCcchhhhhhccCCCeeECCEEECCCC
Confidence 9 8 9999999999999999999986 699999999999999999999888753 2335678888889999999999999
Q ss_pred CCcccccCCCCc
Q 015289 397 RGHGGFLHWDNI 408 (409)
Q Consensus 397 PGlG~~~d~d~~ 408 (409)
||||+++|++.|
T Consensus 373 PGlGveld~~~l 384 (409)
T 3go2_A 373 PGWGTDPVEEAI 384 (409)
T ss_dssp SBSSCCBCHHHH
T ss_pred CCCCcccCHHHH
Confidence 999999999875
|
| >4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-67 Score=525.94 Aligned_cols=336 Identities=18% Similarity=0.172 Sum_probs=283.8
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (409)
|||++|+++.++ ..++.++|||+||+|++||||+. +++++....+ .+.+.|.|+|++|.+
T Consensus 1 MkIt~ie~~~~~--------------~~~~~~~V~v~td~G~~G~GE~~----~~~~~~~~~i--~~~l~p~liG~dp~~ 60 (400)
T 4dxk_A 1 MKITKLETVRVA--------------ERTNLLWVLVHTDEGITGLGETF----FGAETVETYV--HEYIAPRVIGRDPLQ 60 (400)
T ss_dssp CCEEEEEEEEET--------------TSTTEEEEEEEETTSCCEEEEEE----SCHHHHHHHH--HHTHHHHHTTSCTTC
T ss_pred CeEEEEEEEEEC--------------CCCCEEEEEEEECCCCEEEEcCC----CCccHHHHHH--HHHHHHHhCCCCcch
Confidence 899999998764 12468999999999999999953 2344443322 245889999999999
Q ss_pred HHHHHHHHHhhcCC----ChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecC----------------
Q 015289 126 LGSVFGVVAGLLPG----HQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPI---------------- 184 (409)
Q Consensus 126 ~~~~~~~~~~~~~g----~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~---------------- 184 (409)
++.+|+.+ ..+.+ .....|+||||||||||+||.+|+|||+||||+ +++||+|.++..
T Consensus 61 ~~~~~~~~-~~~~~~~~~g~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~yas~~~~~~~~~~~~~~~~~~~ 139 (400)
T 4dxk_A 61 IDLLAQDL-VGYLGFRSSGAEVRGNSAFDIALWDIFGKATNQPIAQLLGGFSRREIRTYNTCAGTEYIKKATGQQTANYG 139 (400)
T ss_dssp HHHHHHHH-CCSSSCSSCSHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSCEEEEBC-------------------
T ss_pred HHHHHHHH-HHHhccCCchHHHHHHHHHHHHHHHHhHhHcCCcHHHHhCCCccCceeEEEeccccccccccccccccccc
Confidence 99999999 43322 223568999999999999999999999999997 579999966431
Q ss_pred ---CCHHH--------HHHHHHHHHHcCCCeEEEecCC--------------ChhHHHHHHHHHHhh-CCCcEEEEeCCC
Q 015289 185 ---VSPAE--------AAELASKYRKQGFTTLKLKVGK--------------NLKEDIEVLRAIRAV-HPDSSFILDANE 238 (409)
Q Consensus 185 ---~~~~~--------~~~~~~~~~~~Gf~~~KiKvG~--------------~~~~d~~~l~avr~~-~~~~~l~vDaN~ 238 (409)
.++++ ..+.+++++++||++||+|+|. +++.|++++++||++ ++++.|++|+|+
T Consensus 140 ~~~~~~~~~~~g~~~~~~~~a~~~~~~G~~~~Kik~g~~~~~~~~~g~~~~~~~~~d~~~v~avR~a~g~~~~l~vDaN~ 219 (400)
T 4dxk_A 140 LSGGKDYDDLNGFLHRADELAHSLLEDGITAMKIWPFDAAAEKTRGQYISMPDLKSALEPFEKIRKAVGDKMDIMVEFHS 219 (400)
T ss_dssp ---------------CHHHHHHHHHHTTCCEEEECTTHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHGGGSEEEEECTT
T ss_pred ccccccchhcccccccHHHHHHHHHHhCCCEEEEcCCCccccccccCcCCHHHHHHHHHHHHHHHHHcCCCceEEEECCC
Confidence 12222 2455678889999999999971 367899999999998 789999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 015289 239 GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (409)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~ 318 (409)
+|+.++|+++++.|+++++ .|||||++++|++++++|++ ++++||++||+++++++++++++.+++|++|+|++
T Consensus 220 ~~~~~~A~~~~~~L~~~~i--~~iEeP~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~a~d~v~~d~~ 293 (400)
T 4dxk_A 220 MWQLLPAMQIAKALTPYQT--FWHEDPIKMDSLSSLTRYAA----VSPAPISASETLGSRWAFRDLLETGAAGVVMLDIS 293 (400)
T ss_dssp CBCHHHHHHHHHHTGGGCC--SEEECCBCTTSGGGHHHHHH----HCSSCEEECTTCCHHHHHHHHHHTTCCCEEEECTT
T ss_pred CCCHHHHHHHHHHHhhcCC--CEEEcCCCcccHHHHHHHHH----hCCCCEEecCCcCCHHHHHHHHHcCCCCEEEeCcc
Confidence 9999999999999999987 49999999999999999875 68999999999999999999999999999999999
Q ss_pred CCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecc-cc-ccccccCCCCCCeeeeCcEEecCC
Q 015289 319 KVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDL-DT-PLLLSEDPVLDGYEVSGAVYKFTN 395 (409)
Q Consensus 319 ~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~-~~-p~~~~~d~~~~~~~~~~G~i~~p~ 395 (409)
++| ++++++++++|+++|+++++|++. +++++++++||++++||+.+.|. +. ...+.+|++.++++++||++.+|+
T Consensus 294 ~~GGit~~~kia~~A~~~gi~~~~h~~~-s~i~~aa~~hlaaa~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~G~i~~p~ 372 (400)
T 4dxk_A 294 WCGGLSEARKIASMAEAWHLPVAPHXCT-GPVVLCASTHLSLNAPNALVQESVRAFYKTWYRDLVTALPEVKNGMITVPP 372 (400)
T ss_dssp TTTHHHHHHHHHHHHHHTTCCEEEC-CC-CHHHHHHHHHHHHHCTTBCCEECCTTC-CCTHHHHBSCCCEEETTEEECCS
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEecCCC-ChHHHHHHHHHHHhCCCceeEEecccccchhhHhhcCCCCeeeCCEEECCC
Confidence 998 999999999999999999999974 99999999999999999988884 31 122346778888999999999999
Q ss_pred CCCcccccCCCCcC
Q 015289 396 ARGHGGFLHWDNIA 409 (409)
Q Consensus 396 ~PGlG~~~d~d~~~ 409 (409)
+||||+++|++.++
T Consensus 373 ~PGlGveld~~~l~ 386 (400)
T 4dxk_A 373 GAGLGMELHPDIEK 386 (400)
T ss_dssp SSBTSCCBCTTGGG
T ss_pred CCCCCCcCCHHHHh
Confidence 99999999999874
|
| >3p0w_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, protein structure initiative; HET: GKR; 1.71A {Ralstonia pickettii} PDB: 4hn8_A 3nxl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-67 Score=534.64 Aligned_cols=348 Identities=19% Similarity=0.236 Sum_probs=301.4
Q ss_pred ceeeeEeEEEEEEEEecCccceeecccee-eeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCC
Q 015289 43 TFTVDVQRAENRPLNVPLIAPFTIATSRL-DQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKES 121 (409)
Q Consensus 43 ~~~mkI~~i~~~~~~~pl~~p~~~a~~~~-~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~ 121 (409)
+++|||++|+++++..| ..+..++.|.. ...+.++|+|+||+|++||||+.. .+.+. ..++++.|.|+|+
T Consensus 5 ~~~~~It~i~~~~v~~~-d~~~~~~~g~h~p~~~~~~V~i~td~Gi~G~GE~~~-----~~~v~---~~i~~l~p~LiG~ 75 (470)
T 3p0w_A 5 THTPRVTEMQVIPVAGR-DSMLLNLCGAHAPFFTRNLVILKDNAGRTGVGEVPG-----GEGIR---QALERVIPLVVGQ 75 (470)
T ss_dssp -CCCBEEEEEEEEEEEE-CCCBEETTEECCSEEEEEEEEEEETTSCEEEEEEEC-----CHHHH---HHHHHTGGGTTTC
T ss_pred CCCCeEEEEEEEEecCC-CcccccccccCCCcceEEEEEEEECCCCEEEEeCCC-----hHHHH---HHHHHHHHHhCCC
Confidence 46799999999999998 66777776653 346799999999999999999852 23332 2345688999999
Q ss_pred CCCCHHHHHHHHHhhcCCC---h--------------------------hhHHHHHHHHHHHHHHHhhcCCchHHHhC-C
Q 015289 122 PAMALGSVFGVVAGLLPGH---Q--------------------------FASVRAAVEMALIDAVAKSVSMPLWRLFG-G 171 (409)
Q Consensus 122 ~~~~~~~~~~~~~~~~~g~---~--------------------------~~~a~said~AlwDl~gk~~g~Pl~~LLG-g 171 (409)
++.+++.+|+.+++.+.+. . ...|+||||+|||||+||.+|+|||+||| |
T Consensus 76 d~~~ie~i~~~~~~~~~~~~~~G~~~~~~~~~r~~~p~~~~g~~~~~~~~~~A~sAID~ALWDl~gK~~g~Pv~~LLGgG 155 (470)
T 3p0w_A 76 SIGRTNGVLSSIRRALAGGGNAAHQATVHQVTSASEAAVLRQPHEINLRMDNVITAVEAALLDLLGQFLEVPVAELLGAG 155 (470)
T ss_dssp BGGGHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHHHHHHHHHHTSBGGGTSTTS
T ss_pred ChhhHHHHHHHHHHHHhhcCCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCC
Confidence 9999999999998754211 0 13689999999999999999999999999 6
Q ss_pred C-CCeeeeeeee-----------------------------cCCCHHHHHHHHHHHHH-cCCCeEEEecCC-ChhHHHHH
Q 015289 172 V-SNTITTDITI-----------------------------PIVSPAEAAELASKYRK-QGFTTLKLKVGK-NLKEDIEV 219 (409)
Q Consensus 172 ~-~~~i~~~~~i-----------------------------~~~~~~~~~~~~~~~~~-~Gf~~~KiKvG~-~~~~d~~~ 219 (409)
+ +++||+|.+. +..++++++++++++++ +||++||+|+|. ++++|+++
T Consensus 156 ~~r~~v~~y~~~~~~gd~~~t~~~~~~~~~~~~~w~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~~~~~Di~r 235 (470)
T 3p0w_A 156 QQRDSAPMLAYLFYVGDRRKTDLPYLEGANGADDWLRLRHEAAMTPAAIARLAEAATERYGFADFKLKGGVMPGAEEMEA 235 (470)
T ss_dssp CCCSEEEBCEEECCBCCGGGSCSCCCCCCTTCCHHHHHTTSCBCSHHHHHHHHHHHHHHHCCSEEEEECSSSCHHHHHHH
T ss_pred CCCCeEEEeeeeccccccccccccccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHH
Confidence 5 5789998653 13578999999999888 699999999995 88999999
Q ss_pred HHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCC----HHHHHHhHHHhhccCCCeEEeCCCC
Q 015289 220 LRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD----WEGLGHVSHIAKDKFGVSVAADESC 295 (409)
Q Consensus 220 l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d----~~~~~~l~~~~~~~~~ipIa~dEs~ 295 (409)
+++||+++|++.|++|+|++|++++|+++++.|+++ + .|||||++++| ++++++|++ ++++|||+||++
T Consensus 236 v~avRea~pd~~L~vDaN~~w~~~~Ai~~~~~Le~~-l--~~iEeP~~~~d~~~~~~~~~~l~~----~~~iPIa~dE~~ 308 (470)
T 3p0w_A 236 IAAIKARFPHARVTLDPNGAWSLNEAIALCKGQGHL-V--AYAEDPCGPEAGYSGREVMAEFKR----ATGIPTATNMIA 308 (470)
T ss_dssp HHHHHHHCTTSEEEEECTTBBCHHHHHHHHTTCTTT-C--SEEESCBCCBTTBCHHHHHHHHHH----HHCCCEEESSSS
T ss_pred HHHHHHhCCCCeEEeeCCCCCCHHHHHHHHHhcccc-c--eeecCCCChhhccchHHHHHHHHh----cCCCCEEeCCcc
Confidence 999999999999999999999999999999999998 6 49999999998 788999875 678999999999
Q ss_pred CCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceeccccccc
Q 015289 296 RSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLL 374 (409)
Q Consensus 296 ~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~p~~ 374 (409)
.+..+++++++.+++|++|+|+ ++| ++++++++++|+++|+++++|++.++++++++++|+++++||+ +.+++.++.
T Consensus 309 ~~~~~~~~~l~~~a~div~~d~-~~GGit~a~kia~lA~a~gv~~~~h~~~e~~I~~aA~~hlaaa~pn~-~~~~d~~~~ 386 (470)
T 3p0w_A 309 TDWRQMGHAVQLHAVDIPLADP-HFWTMQGSVRVAQLCDEWGLTWGSHSNNHFDVSLAMFTHVAAAAPGN-ITAIDTHWI 386 (470)
T ss_dssp CSHHHHHHHHHTTCCSEEBCCH-HHHCHHHHHHHHHHHHHHTCCCBCCCCSCCHHHHHHHHHHHHTCCSC-CCCBCCCHH
T ss_pred CCHHHHHHHHHcCCCCEEEecC-ccCCHHHHHHHHHHHHHcCCEEEecCCcccHHHHHHHHHHHHhCCCc-ceeeccccc
Confidence 9999999999999999999999 676 9999999999999999999999999999999999999999986 445555433
Q ss_pred c---ccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 375 L---SEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 375 ~---~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
+ .++++.++++++||++.+|++||||+++|++.|
T Consensus 387 ~~~~~~~l~~~p~~~~dG~i~vP~~PGLGveld~~~l 423 (470)
T 3p0w_A 387 WQEAQERLTREPLRIQGGHVAVPERPGLGIEIDMDRV 423 (470)
T ss_dssp HHTTTCCCBSSCCCEETTEEECCSSSBTSCCBCHHHH
T ss_pred cccchhhhcCCCceeECCEEECCCCCCcCceeCHHHH
Confidence 2 257778888999999999999999999999876
|
| >4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-66 Score=525.09 Aligned_cols=340 Identities=19% Similarity=0.222 Sum_probs=291.8
Q ss_pred eeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHcCCCC
Q 015289 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPA 123 (409)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~ 123 (409)
.|||++|+++.+. | .++.++|||+||+|++||||+... +++. .....+++ +.|.|+|++|
T Consensus 22 ~mkIt~v~~~~~~-----~---------~~~~v~V~v~td~Gi~G~GE~~~~----g~~~-~~~~~l~~~l~p~LiG~dp 82 (426)
T 4e4f_A 22 SMKIVSAEVFVTC-----P---------GRNFVTLKITTDSGLTGLGDATLN----GREL-PVASYLNDHVCPQLIGRDA 82 (426)
T ss_dssp CCBEEEEEEEEEC-----S---------SSCEEEEEEEETTSCEEEEECCCT----TCHH-HHHHHHHHTHHHHHTTSBT
T ss_pred CcEEEEEEEEEEc-----C---------CCCEEEEEEEECCCCEEEEecccC----CCcH-HHHHHHHHHHHHHHcCCCh
Confidence 5999999987642 1 247899999999999999998743 2222 12233444 7899999999
Q ss_pred CCHHHHHHHHHhhc---CCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCC-CeeeeeeeecCCCHHHHHHHHHHHHH
Q 015289 124 MALGSVFGVVAGLL---PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVS-NTITTDITIPIVSPAEAAELASKYRK 199 (409)
Q Consensus 124 ~~~~~~~~~~~~~~---~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~-~~i~~~~~i~~~~~~~~~~~~~~~~~ 199 (409)
.+++.+|+.+++.. +|.....|+||||||||||+||.+|+|||+||||.. ++||+|.+....+++++.++++++++
T Consensus 83 ~~ie~i~~~l~~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~~~~~~~~~~~~~ 162 (426)
T 4e4f_A 83 HQIEDIWQYFYKGAYWRRGPVTMSAISAVDMALWDIKAKAANMPLYQLLGGASRTGVMVYCHTTGHSIDEVLDDYAKHRD 162 (426)
T ss_dssp TCHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHTCCSSSSEEEEEEECCSSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhccccCCccchhhHHHHHHHHHHHhHhHcCCcHHHHcCCCCCCceeEeEeCCCCCHHHHHHHHHHHHH
Confidence 99999999997642 232345799999999999999999999999999974 58999988777889999999999999
Q ss_pred cCCCeEEEecCCC-----------------------------------hhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHH
Q 015289 200 QGFTTLKLKVGKN-----------------------------------LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQ 243 (409)
Q Consensus 200 ~Gf~~~KiKvG~~-----------------------------------~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~ 243 (409)
+||+++|+|+|.+ ++.+++++++||++ ++++.|++|+|++|+.+
T Consensus 163 ~Gf~~iKikvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~avR~a~G~d~~L~vDaN~~~~~~ 242 (426)
T 4e4f_A 163 QGFKAIRVQCGVPGMETTYGMAKGKGLAYEPATKGSLPEEQLWSTEKYLDFTPKLFEAVRDKFGFNEHLLHDMHHRLTPI 242 (426)
T ss_dssp TTCSEEEECC-------------------CCSEESSSCCEEEECHHHHHHHHHHHHHHHHHHHTTSSEEEEECTTCSCHH
T ss_pred cCCCEEEEeccCCccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHH
Confidence 9999999999832 12357899999997 89999999999999999
Q ss_pred HHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-H
Q 015289 244 EAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-V 322 (409)
Q Consensus 244 ~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i 322 (409)
+|+++++.|+++++ .|||||++++|++++++|++ ++++||++||+++++++++++++.+++|++|+|++++| +
T Consensus 243 ~A~~~~~~L~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~ga~d~v~~k~~~~GGi 316 (426)
T 4e4f_A 243 EAARFGKSVEDYRL--FWMEDPTPAENQACFRLIRQ----HTVTPIAVGEVFNSIWDCKQLIEEQLIDYIRTTITHAGGI 316 (426)
T ss_dssp HHHHHHHHTGGGCC--SEEECCSCCSSGGGGHHHHT----TCCSCEEECTTCCSGGGTHHHHHTTCCSEECCCTTTTTHH
T ss_pred HHHHHHHHHhhcCC--CEEECCCChHHHHHHHHHHh----cCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeCccccCCH
Confidence 99999999999987 49999999999999999864 78999999999999999999999999999999999998 9
Q ss_pred HHHHHHHHHHHHcCCcEEEcc-CCchHHHHHHHHHHHccCCCCceeccccccccccCCCCCCeeeeCcEEecCCCCCccc
Q 015289 323 LGALEIIEVVRASGLNLMIGG-MVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGG 401 (409)
Q Consensus 323 ~~~~~i~~~A~~~gi~~~~~~-~~es~i~~~~~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~ 401 (409)
+++++++++|+++|+++++|+ +.+|++++++++|+++++||+.++|++.+.....+++.++++++||++.+|++||||+
T Consensus 317 t~~~~ia~~A~~~gi~v~~h~~~~~s~i~~aa~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGLGv 396 (426)
T 4e4f_A 317 TGMRRIADFASLYQVRTGSHGPSDLSPICMAAALHFDLWVPNFGVQEYMGYSEQMLEVFPHSWTFDNGYMHPGEKPGLGI 396 (426)
T ss_dssp HHHHHHHHHHHTTTCEEEECCCTTSCHHHHHHHHHHHHHCTTEEEEECCCCCHHHHHHSCCCCEEETTEEECCSSSBTCC
T ss_pred HHHHHHHHHHHHcCCEEeeeCCCCccHHHHHHHHHHHHhCCCceeEeecCcchhhHhhcCCCceeeCCEEECCCCCCCCc
Confidence 999999999999999999987 5689999999999999999999999875321122445678899999999999999999
Q ss_pred ccCCCCcC
Q 015289 402 FLHWDNIA 409 (409)
Q Consensus 402 ~~d~d~~~ 409 (409)
++|++.++
T Consensus 397 e~de~~~~ 404 (426)
T 4e4f_A 397 EFDEKLAA 404 (426)
T ss_dssp CCCHHHHT
T ss_pred ccCHHHHH
Confidence 99998764
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-66 Score=523.50 Aligned_cols=347 Identities=16% Similarity=0.188 Sum_probs=298.7
Q ss_pred eeeeEeEEEEEEEEecCcc----------------ceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHH
Q 015289 44 FTVDVQRAENRPLNVPLIA----------------PFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~----------------p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~ 107 (409)
.+|||++|+.+.+..+-.. .+..+.++++.++.++|||+||+|++||||+.+.+ . .+
T Consensus 21 ~~m~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~lV~v~td~G~~G~GE~~~~~----~---~~ 93 (412)
T 3stp_A 21 QSMKIKSVRTRVWTWKGPTVPPQGNFCTNASDALWMKGDAMSSFRFHQWLTCEVETEDGTIGIGNAALAP----S---VV 93 (412)
T ss_dssp --CCEEEEEEEEEEECSCCCCCCSSSCCCGGGGSCCCSCTTTTTCCCEEEEEEEEETTSCEEEEEECSSH----H---HH
T ss_pred eccEEEEEEEEEEeccCCCCCCCCCCCCCchhccCCCCCcceEEEeccEEEEEEEECCCCEEEEeccCCH----H---HH
Confidence 5799999999998753111 23466788888899999999999999999986532 2 22
Q ss_pred HHHHHH-HHHHHcCCCCCCHHHHHHHHHhhcC----CChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeee
Q 015289 108 MVKASE-ACEVLKESPAMALGSVFGVVAGLLP----GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDIT 181 (409)
Q Consensus 108 ~~~~~~-~~~~l~g~~~~~~~~~~~~~~~~~~----g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~ 181 (409)
...+++ +.|.|+|++|.+++.+|+.+++... +.....|+|||||||||++||.+|+|||+||||. +++||+|.+
T Consensus 94 ~~~i~~~l~p~LiG~dp~~~e~l~~~~~~~~~~~g~~g~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~s 173 (412)
T 3stp_A 94 KKVIDDWYAPLVIGEDPFDYAYIWEKMYRRSHAWGRKGIGMTAISAIDIAIWDLMGKLVGKPVFKLLGGRTKDRIPVYYS 173 (412)
T ss_dssp HHHHHHTTHHHHTTSCGGGHHHHHHHHHHHTHHHHSSTHHHHHHHHHHHHHHHHHHHHTTCBHHHHHTCCSSSSEEEEEE
T ss_pred HHHHHHHHHHHHCCCCcchHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcCCCHHHhcCCCCCceEEEEEE
Confidence 334455 7899999999999999999976431 1224578999999999999999999999999997 679999988
Q ss_pred e-cCCCHHHHHHHHHHHHHcCCCeEEEecCCC-------hhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHH
Q 015289 182 I-PIVSPAEAAELASKYRKQGFTTLKLKVGKN-------LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKL 252 (409)
Q Consensus 182 i-~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~-------~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L 252 (409)
. ...+++++++.+++++++||++||+|+|.+ ++.|++++++||++ ++++.|++|+|++|++++|+++++.|
T Consensus 174 ~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~gp~dg~~~~~~die~v~avReavG~d~~L~vDaN~~~~~~~Ai~~~~~L 253 (412)
T 3stp_A 174 KLYAGSIEAMQKEAEEAMKGGYKAFKSRFGYGPKDGMPGMRENLKRVEAVREVIGYDNDLMLECYMGWNLDYAKRMLPKL 253 (412)
T ss_dssp CCCSCCHHHHHHHHHHHHTTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHcCCCEEEEecccCcccccchHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4 567899999999999999999999999853 57999999999997 89999999999999999999999999
Q ss_pred HhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHH
Q 015289 253 YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEV 331 (409)
Q Consensus 253 ~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~ 331 (409)
+++++. |||||++++|++++++|++ ++++||++||+++++++++++++.+++|++|+|++++| ++++++++++
T Consensus 254 e~~~i~--~iEeP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~li~~~a~D~v~ik~~~~GGit~a~kia~~ 327 (412)
T 3stp_A 254 APYEPR--WLEEPVIADDVAGYAELNA----MNIVPISGGEHEFSVIGCAELINRKAVSVLQYDTNRVGGITAAQKINAI 327 (412)
T ss_dssp GGGCCS--EEECCSCTTCHHHHHHHHH----TCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTHHHHHHHHHHH
T ss_pred HhcCCC--EEECCCCcccHHHHHHHHh----CCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecChhhcCCHHHHHHHHHH
Confidence 999874 9999999999999999875 68999999999999999999999999999999999998 9999999999
Q ss_pred HHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceeccc------cccccccCCCCCCeeeeCcEEecCCC-CCcccccC
Q 015289 332 VRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLD------TPLLLSEDPVLDGYEVSGAVYKFTNA-RGHGGFLH 404 (409)
Q Consensus 332 A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~------~p~~~~~d~~~~~~~~~~G~i~~p~~-PGlG~~~d 404 (409)
|+++|+++++|| +.++++||+++.+++.++|+. ....+.+|++.++++++||++.+|++ ||||+++|
T Consensus 328 A~a~gi~v~~h~------~~aa~~hlaaA~~~~~~~e~~~~~d~~~~~~l~~~~~~~~~~~~~G~i~vp~~~PGlGveld 401 (412)
T 3stp_A 328 AEAAQIPVIPHA------GQMHNYHLTMANTNCPISEYFPVFDVEVGNELFYYIFEGDPEAVDGYLQLDDDLPGLGIAIS 401 (412)
T ss_dssp HHHHTCCBCCSS------CSHHHHHHHHTCTTCCCEEECCCCSSSSSTTTHHHHEECCCCCBTTEECCCSSSCBTSCEEC
T ss_pred HHHcCCEEEecc------HHHHHHHHHHhCCCCceEEecccccccccchhhhhhccCCCcccCCEEEcCCCCCcccccCC
Confidence 999999999998 357899999888887776653 22233456677788899999999999 99999999
Q ss_pred CCCcC
Q 015289 405 WDNIA 409 (409)
Q Consensus 405 ~d~~~ 409 (409)
++.|+
T Consensus 402 ~~~l~ 406 (412)
T 3stp_A 402 DKHLQ 406 (412)
T ss_dssp CTTGG
T ss_pred HHHHH
Confidence 99874
|
| >3mzn_A Glucarate dehydratase; lyase, structural genomics, protein structure initiative, PS nysgrc; 1.85A {Chromohalobacter salexigens} PDB: 3nfu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-66 Score=529.01 Aligned_cols=347 Identities=20% Similarity=0.269 Sum_probs=299.5
Q ss_pred eeeeEeEEEEEEEEecCccceeeccce-eeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCC
Q 015289 44 FTVDVQRAENRPLNVPLIAPFTIATSR-LDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP 122 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p~~~a~~~-~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~ 122 (409)
.+|||++|+++++..+ ..+..+..|. ......++|+|+||+|++||||+.. .+.+. ..++++.|.|+|++
T Consensus 3 ~~~~It~v~~~~v~~~-d~~~~~~~g~~~~~~~~~iV~v~td~Gi~G~GE~~~-----~~~v~---~~i~~l~p~LiG~d 73 (450)
T 3mzn_A 3 LFPKITKMNVVPVAGE-DGFLLNLSGGHEPWFIRCVLVLEDESGNRGVGEIPS-----SEGIL---NGLEKCRSLVEGAR 73 (450)
T ss_dssp CCCBEEEEEEEEEEEE-CCCBEETTEECCSEEEEEEEEEEETTSCEEEEEEEC-----CHHHH---HHHHHTHHHHTTCB
T ss_pred CCCEEEEEEEEEeccc-CccccccccCCCCcceEEEEEEEECCCCEEEEeCCC-----cHHHH---HHHHHHHHHhCCCC
Confidence 3689999999999988 5556555544 3446788999999999999999853 23332 23456889999999
Q ss_pred CCCHHHHHHHHHhhcC-------CC------hhhHHHHHHHHHHHHHHHhhcCCchHHHhC--CC-CCeeeeeeee----
Q 015289 123 AMALGSVFGVVAGLLP-------GH------QFASVRAAVEMALIDAVAKSVSMPLWRLFG--GV-SNTITTDITI---- 182 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~-------g~------~~~~a~said~AlwDl~gk~~g~Pl~~LLG--g~-~~~i~~~~~i---- 182 (409)
+.+++.+|+.+++.+. |+ ....|+||||+|||||+||.+|+|||+||| |+ +++||+|.+.
T Consensus 74 p~~ie~i~~~~~~~~~~~~~g~~G~~~~~~~~~~~A~sAID~ALwDl~gK~~g~Pv~~LLG~~G~~r~~v~~y~~~~~~g 153 (450)
T 3mzn_A 74 VNEVKQVLSRARGLLAQGGPEERGRQTFDLRVAVHVITAIESALFDLFGQALGMPVADLLGQYGRQRDEVEALGYLFLLG 153 (450)
T ss_dssp GGGHHHHHHHHHHHHGGGCCCCCCSSSSCCCSHHHHHHHHHHHHHHHHHHHHTCBGGGGSTTTCCCCSEEEBCEEEECBC
T ss_pred hhhHHHHHHHHHHHhhcccCCCcccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCcCceEEeeeeecccc
Confidence 9999999999987532 11 135689999999999999999999999999 54 5789987542
Q ss_pred -------------------------cCCCHHHHHHHHHHHHH-cCCCeEEEecCC-ChhHHHHHHHHHHhhCCCcEEEEe
Q 015289 183 -------------------------PIVSPAEAAELASKYRK-QGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILD 235 (409)
Q Consensus 183 -------------------------~~~~~~~~~~~~~~~~~-~Gf~~~KiKvG~-~~~~d~~~l~avr~~~~~~~l~vD 235 (409)
+..++++++++++++++ +||++||+|+|. ++++|++++++||+++|++.|++|
T Consensus 154 d~~~t~~~~~s~~~~~~~w~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~~~~~Di~~v~avRea~pd~~L~vD 233 (450)
T 3mzn_A 154 DPDKTDLPYPRVADPVDAWDEVRYREAMTPEAVANLARAAYDRYGFKDFKLKGGVLRGEEEADCIRALHEAFPEARLALD 233 (450)
T ss_dssp CGGGSSSCCCCCSSCCSHHHHHTTSCBCSHHHHHHHHHHHHHHHCCSEEEEECSSSCHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred ccccccccccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 13579999999999887 699999999995 789999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCC----HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCC
Q 015289 236 ANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD----WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLAD 311 (409)
Q Consensus 236 aN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d----~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d 311 (409)
+|++|++++|+++++.|+++ + .|||||++++| ++++++|++ ++++|||+||++.+..+++++++.+++|
T Consensus 234 aN~~w~~~~A~~~~~~L~~~-i--~~iEeP~~~~d~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d 306 (450)
T 3mzn_A 234 PNGAWKLDEAVRVLEPIKHL-L--SYAEDPCGQEGGFSGRETMAEFKK----RTGLPTATNMIATDYKQLQYAVQLNSVD 306 (450)
T ss_dssp CTTCBCHHHHHHHHGGGGGG-C--SEEESSBCCBTTBCHHHHHHHHHH----HHCCCEEESSSSSSHHHHHHHHHHTCCS
T ss_pred CCCCCCHHHHHHHHHHhhhc-c--ceeeCCCCcccccchHHHHHHHHH----hcCCCEEeCCccCCHHHHHHHHHcCCCC
Confidence 99999999999999999998 6 49999999998 788999875 6789999999999999999999999999
Q ss_pred EEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceeccccccccc--cCCCCCCeeeeC
Q 015289 312 VINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLS--EDPVLDGYEVSG 388 (409)
Q Consensus 312 iv~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~p~~~~--~d~~~~~~~~~~ 388 (409)
++|+|+ ++| ++++++++++|+++|+++++|++.++++++++++|+++++||. +.+++.++.+. ++++.++++++|
T Consensus 307 i~~~d~-~~GGit~a~kia~lA~a~gv~~~~h~~~~~~I~~aA~~hlaaa~p~~-~~~~d~~~~~~~~~~l~~~~~~~~~ 384 (450)
T 3mzn_A 307 IPLADC-HFWTMQGAVAVGELCNEWGMTWGSHSNNHFDISLAMMTHVAAACPGE-ITAIDTHWIWQDGQRITREPFQIRD 384 (450)
T ss_dssp EEBCCH-HHHCHHHHHHHHHHHHHTTCCCBCCCCSCCHHHHHHHHHHHHTCCSC-CCCBCCCHHHHTTCCSBSSCCCCBT
T ss_pred EEEecC-ccCCHHHHHHHHHHHHHcCCEEEecCCcccHHHHHHHHHHHHhCCCc-chhhccccccccccccccCCCeEEC
Confidence 999998 676 9999999999999999999999999999999999999999986 45666655433 467788889999
Q ss_pred cEEecCCCCCcccccCCCCc
Q 015289 389 AVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 389 G~i~~p~~PGlG~~~d~d~~ 408 (409)
|++.+|++||||+++|++.|
T Consensus 385 G~i~vp~~PGLGveld~~~l 404 (450)
T 3mzn_A 385 GKLTVPKTPGLGIELDDDKL 404 (450)
T ss_dssp TEEECCCSSBTSCCBCHHHH
T ss_pred CEEECCCCCcCCCccCHHHH
Confidence 99999999999999999876
|
| >3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-66 Score=519.39 Aligned_cols=335 Identities=16% Similarity=0.187 Sum_probs=285.9
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHH-HHHHHHcCCCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS-EACEVLKESPAM 124 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~-~~~~~l~g~~~~ 124 (409)
|||++|+++.++ ..++.++|||+||+|++||||+.. ..+... ..+. .+.|.|+|++|.
T Consensus 4 mkIt~v~~~~~~--------------~~~~~~~V~v~td~G~~G~GE~~~----~~~~~~---~~i~~~l~p~liG~dp~ 62 (410)
T 3dip_A 4 PRITALRTIRLP--------------ERPKLIWVEVETEDGLTGLGETFR----GAQAVE---AVLHEQTAPAIIGRAAE 62 (410)
T ss_dssp CBEEEEEEEEET--------------TEEEEEEEEEEETTSCEEEEEEES----CHHHHH---HHHHHTHHHHHTTSBTT
T ss_pred CeEEEEEEEEEC--------------CCCCEEEEEEEECCCCEEEEeCCC----ChHHHH---HHHHHHHHHHhcCCCcc
Confidence 999999998763 135789999999999999999432 233322 2334 388999999999
Q ss_pred CHHHHHHHHHhhcC----CChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecC---------------
Q 015289 125 ALGSVFGVVAGLLP----GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPI--------------- 184 (409)
Q Consensus 125 ~~~~~~~~~~~~~~----g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~--------------- 184 (409)
+++.+|+.+++... +.....|+||||||||||+||.+|+|||+||||+ +++||+|.++..
T Consensus 63 ~~e~~~~~~~~~~~~~~~~~~~~~A~sAID~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~yas~~~~~g~~~~~~~~~~~~ 142 (410)
T 3dip_A 63 NITSISSELLNPYVGFGSSSAEVRAASAVDIALWDLAGQRAGVPLHVALGGAARDRVPVYATCAGYDFNTSLGGRRSIGS 142 (410)
T ss_dssp CHHHHHHHHTCCSSSCSSCCHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSEEEEEEEECTTTC------------
T ss_pred hHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHHhHhHcCCcHHHHhCCCcCCceeEEEecccccccccccccccccc
Confidence 99999999976431 1234578999999999999999999999999996 579999966431
Q ss_pred --------CCHHH----HHHHHHHHHHcCCCeEEE--------ecCC-----ChhHHHHHHHHHHhh-CCCcEEEEeCCC
Q 015289 185 --------VSPAE----AAELASKYRKQGFTTLKL--------KVGK-----NLKEDIEVLRAIRAV-HPDSSFILDANE 238 (409)
Q Consensus 185 --------~~~~~----~~~~~~~~~~~Gf~~~Ki--------KvG~-----~~~~d~~~l~avr~~-~~~~~l~vDaN~ 238 (409)
.++++ ..+.+++++++||++||+ |+|. +++.|++++++||++ ++++.|++|+|+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~K~~~~~~~~~K~G~~~~~~~~~~d~e~v~avR~a~g~d~~l~vDaN~ 222 (410)
T 3dip_A 143 AELSTGPYDDQVAFMRDAGVLAESLVAEGYAAMKIWPFDDFASITPHHISLTDLKDGLEPFRKIRAAVGQRIEIMCELHS 222 (410)
T ss_dssp ----------------CHHHHHHHHHHTTCSEEEECTTHHHHTTCTTCCCHHHHHHHHHHHHHHHHHHTTSSEEEEECTT
T ss_pred cccccccccchhhhhhhHHHHHHHHHHcCCCEEEECCccCccccccCcCCHHHHHHHHHHHHHHHHHcCCCceEEEECCC
Confidence 12222 245667888999999999 9884 367899999999998 789999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCCceeecC-CCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCC
Q 015289 239 GYKPQEAVEVLEKLYEMGVTPVLFEQP-VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKL 317 (409)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~iEeP-~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~ 317 (409)
+|+.++|+++++.|+++++ .||||| ++++|++++++|++ ++++||++||+++++.+++++++.+++|++|+|+
T Consensus 223 ~~~~~~A~~~~~~L~~~~i--~~iEqP~~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~ 296 (410)
T 3dip_A 223 LWGTHAAARICNALADYGV--LWVEDPIAKMDNIPAVADLRR----QTRAPICGGENLAGTRRFHEMLCADAIDFVMLDL 296 (410)
T ss_dssp CBCHHHHHHHHHHGGGGTC--SEEECCBSCTTCHHHHHHHHH----HHCCCEEECTTCCSHHHHHHHHHTTCCSEEEECT
T ss_pred CCCHHHHHHHHHHHHhcCC--CEEECCCCCcccHHHHHHHHh----hCCCCEEecCCcCCHHHHHHHHHcCCCCeEeecc
Confidence 9999999999999999987 499999 89999999999875 5789999999999999999999999999999999
Q ss_pred CCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecc-c-cccccccCCCCCCeeeeCcEEecC
Q 015289 318 AKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDL-D-TPLLLSEDPVLDGYEVSGAVYKFT 394 (409)
Q Consensus 318 ~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~-~-~p~~~~~d~~~~~~~~~~G~i~~p 394 (409)
+++| ++++++++++|+++|+++++|++ |++++++++||++++||+.+.|+ + ....+.+|++.++++++||++.+|
T Consensus 297 ~~~GGit~~~~ia~~A~~~gi~~~~h~~--s~i~~aa~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~~~G~i~~p 374 (410)
T 3dip_A 297 TWCGGLSEGRKIAALAETHARPLAPHXT--GPVALMAGLHLALHAPTAIFQEVVRASLATWYADLVDHLPVIQEGIALAP 374 (410)
T ss_dssp TTSSCHHHHHHHHHHHHHTTCCEEECSS--CHHHHHHHHHHHHHCTTBCCEEEECTTSCCTHHHHBSCCCCEETTEEECC
T ss_pred cccCCHHHHHHHHHHHHHcCCEEeeeCc--cHHHHHHHHHHHHhCCCCeEEEeccccCchhHHhhcCCCCcccCCEEECC
Confidence 9997 99999999999999999999998 99999999999999999988884 3 222334677888899999999999
Q ss_pred CCCCcccccCCCCcC
Q 015289 395 NARGHGGFLHWDNIA 409 (409)
Q Consensus 395 ~~PGlG~~~d~d~~~ 409 (409)
++||||+++|++.++
T Consensus 375 ~~PGlGve~d~~~l~ 389 (410)
T 3dip_A 375 TRPGLGTALLPHVRK 389 (410)
T ss_dssp CSSBTSCCBCTTGGG
T ss_pred CCCCCCcccCHHHHh
Confidence 999999999999874
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-65 Score=515.09 Aligned_cols=340 Identities=18% Similarity=0.240 Sum_probs=301.0
Q ss_pred eeEeEEEEEEEEecCcccee---ec-cceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHcC
Q 015289 46 VDVQRAENRPLNVPLIAPFT---IA-TSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKE 120 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~---~a-~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g 120 (409)
|||++|+++++++|++.||+ ++ .++++.++.++|||+|++|++||||+.. ++. +...+++ ++|.|+|
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~~V~v~td~G~~G~GE~~~------~~~--~~~~i~~~l~~~l~g 72 (382)
T 1rvk_A 1 MIITDVEVRVFRTTTRRHSDSAGHAHPGPAHQVEQAMLTVRTEDGQEGHSFTAP------EIV--RPHVIEKFVKKVLIG 72 (382)
T ss_dssp CBEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEETTSCEEEEEECG------GGG--CHHHHHHTHHHHHTT
T ss_pred CeEeEEEEEEEecCCCCcccccccccccccccceEEEEEEEECCCCEEEEEecC------chH--HHHHHHHHHHHHHcC
Confidence 89999999999999999998 87 6778888999999999999999999972 221 2233453 7899999
Q ss_pred CCCCCHHHHHHHHHhhc--C-CChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeee--c------CCCHHH
Q 015289 121 SPAMALGSVFGVVAGLL--P-GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITI--P------IVSPAE 189 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~--~-g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i--~------~~~~~~ 189 (409)
+++.+++.+|+.+++.. . +...+.+++||||||||+.||..|+|+|+||||.++++|+|.+. + ..++++
T Consensus 73 ~d~~~~~~~~~~l~~~~~~~g~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~vp~~~~~~~g~~~~~~~~~~e~ 152 (382)
T 1rvk_A 73 EDHRDRERLWQDLAHWQRGSAAQLTDRTLAVVDCALWDLAGRSLGQPVYKLIGGYRDKVLAYGSIMCGDELEGGLATPED 152 (382)
T ss_dssp SBTTCHHHHHHHHHHHHTTTTTCSCHHHHHHHHHHHHHHHHHHHTCBHHHHHCCSCSEEEEEEEECCCCCCTTTTSSHHH
T ss_pred CChHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhHhHhCCCHHHHhCCCCCcceecEEeccCccccccCCCHHH
Confidence 99999999999985522 1 11135789999999999999999999999999987799999543 3 468999
Q ss_pred HHHHHHHHHHcCCCeEEEecCC-------ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCce
Q 015289 190 AAELASKYRKQGFTTLKLKVGK-------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~-------~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~ 261 (409)
+.+.+++++++||+++|+|+|. +++.|++++++||++ ++++.|++|+|++|+.++|+++++.|+++++. |
T Consensus 153 ~~~~a~~~~~~Gf~~iKik~g~~~~~~~~~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~--~ 230 (382)
T 1rvk_A 153 YGRFAETLVKRGYKGIKLHTWMPPVSWAPDVKMDLKACAAVREAVGPDIRLMIDAFHWYSRTDALALGRGLEKLGFD--W 230 (382)
T ss_dssp HHHHHHHHHHHTCSEEEEECCCTTSTTCCCHHHHHHHHHHHHHHHCTTSEEEEECCTTCCHHHHHHHHHHHHTTTCS--E
T ss_pred HHHHHHHHHHCCCCEEEEcCCcCccccccchHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCC--E
Confidence 9999999999999999999996 789999999999997 89999999999999999999999999999874 9
Q ss_pred eecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCC-HHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcE
Q 015289 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRS-LDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNL 339 (409)
Q Consensus 262 iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~-~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~ 339 (409)
||||++++|++++++|++ ++++||++||++++ +++++++++.+++|++|+|++++| ++++++++++|+++|+++
T Consensus 231 iE~P~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~ 306 (382)
T 1rvk_A 231 IEEPMDEQSLSSYKWLSD----NLDIPVVGPESAAGKHWHRAEWIKAGACDILRTGVNDVGGITPALKTMHLAEAFGMEC 306 (382)
T ss_dssp EECCSCTTCHHHHHHHHH----HCSSCEEECSSCSSHHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCCE
T ss_pred EeCCCChhhHHHHHHHHh----hCCCCEEEeCCccCcHHHHHHHHHcCCCCEEeeCchhcCCHHHHHHHHHHHHHcCCeE
Confidence 999999999999999975 57899999999999 999999999999999999999997 999999999999999999
Q ss_pred EEccCCchHHHHHHHHHHHccCCCCceeccc----------cccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 340 MIGGMVETRLAMGFAGHLSAGLGCFKFIDLD----------TPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 340 ~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~----------~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
++| +.+++ ++|++++++++.+.|+. +|+ +.+|++ ++++ +||++.+|++||||+++|++.+
T Consensus 307 ~~~-~~~~~-----~~~laaa~~~~~~~E~~~~~~~~~~~~~~~-~~~d~~-~~~~-~~G~~~~p~~PGlGv~~d~~~l 376 (382)
T 1rvk_A 307 EVH-GNTAM-----NLHVVAATKNCRWYERGLLHPFLEYDDGHD-YLKSLS-DPMD-RDGFVHVPDRPGLGEDIDFTFI 376 (382)
T ss_dssp EEC-CCSHH-----HHHHHHHCSSCCCEEEEEECTTSCGGGCCT-TBSSCS-SCBC-TTSEEECCSCSBTCCCBCHHHH
T ss_pred eec-CCCCH-----HHHHHHhCCccceeeeccccccccccccch-hHHhhc-cCCC-cCCEEECCCCCCCccccCHHHH
Confidence 999 55776 88999999998887754 343 367777 7788 9999999999999999999865
|
| >3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, TIM barrel; HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A 3t9p_A 3t8q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-66 Score=516.55 Aligned_cols=334 Identities=21% Similarity=0.331 Sum_probs=282.0
Q ss_pred eeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHH-HHHHHHHcCCCC
Q 015289 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA-SEACEVLKESPA 123 (409)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~-~~~~~~l~g~~~ 123 (409)
.|||++|+++.. ++.++|||+||+|++||||+.+ ++.+... ..+ +.+.|.|+|+++
T Consensus 22 ~mkIt~v~~~~~-----------------~~~~~V~v~Td~G~~G~GE~~~---~~~~~~~---~~i~~~l~p~LiG~d~ 78 (388)
T 3tcs_A 22 SMKLKAIETFTN-----------------DAVGFVRVTTQDGAQGWGQVST---YHADITC---TVLHRQVAPWMLGQDI 78 (388)
T ss_dssp -CBEEEEEEEEC-----------------SSCEEEEEEETTSCEEEEECCS---SSHHHHH---HHHHHHTHHHHTTSBC
T ss_pred ccEEEEEEEEEe-----------------CCeEEEEEEECCCCEEEEeccC---CccHHHH---HHHHHHHHHHhCCCCc
Confidence 499999997652 1357999999999999999874 2333222 223 347899999999
Q ss_pred CCHHHHHHHHHhh---cCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecC--CCHHHHHHHHHHH-
Q 015289 124 MALGSVFGVVAGL---LPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI--VSPAEAAELASKY- 197 (409)
Q Consensus 124 ~~~~~~~~~~~~~---~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~--~~~~~~~~~~~~~- 197 (409)
.+++.+|+.+++. .+|+....|+|||||||||++||.+|+|||+||||.+++||+|.+... .++++..+.++++
T Consensus 79 ~~~e~l~~~~~~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGg~~~~v~~y~s~~~~~~~~~~~~~~~~~~~ 158 (388)
T 3tcs_A 79 TDLDDLLDIVTEREHKFPGSYLRRAMAGVDTAIWDLRGKQQGKPVAEVLGGTPGLIRAYASSMKRDITPRDEAERLKRLR 158 (388)
T ss_dssp TTHHHHHHHHHHHTTTCCBHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCCEEEEEEEECCCSSSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHhHcCCcHHHHhCCCCCceEEEEecCcCCCChHHHHHHHHHHH
Confidence 9999999999753 233333468999999999999999999999999999889999987532 3677666655554
Q ss_pred HHcCCCeEEEecCCC--------hhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCC
Q 015289 198 RKQGFTTLKLKVGKN--------LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR 268 (409)
Q Consensus 198 ~~~Gf~~~KiKvG~~--------~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~ 268 (409)
+++||++||+|+|.+ +++|++++++||++ ++++.|++|+|++|++++|+++++.|+++++. |||||+++
T Consensus 159 ~~~Gf~~~K~KvG~~~~~d~~~~~~~~~~~v~avReavG~d~~l~vDaN~~~~~~~A~~~~~~l~~~~i~--~iEeP~~~ 236 (388)
T 3tcs_A 159 DTQGFTAFKVRAGAEVGRNRDEWPGRTEEIIPTMRRELGDDVDLLIDANSCYTPDRAIEVGHMLQDHGFC--HFEEPCPY 236 (388)
T ss_dssp HHHCCCEEEEECSCTTCTTCCSSTTHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHHHTTCC--EEECCSCT
T ss_pred HhcCCCEEEEccCCCcccccccchhHHHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCe--EEECCCCc
Confidence 578999999999943 45678999999997 89999999999999999999999999999874 99999999
Q ss_pred CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCch
Q 015289 269 DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVET 347 (409)
Q Consensus 269 ~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es 347 (409)
+|++++++|++ ++++||++||++++.++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. +
T Consensus 237 ~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~a~kia~~A~~~gv~~~~h~~~-~ 311 (388)
T 3tcs_A 237 WELAQTKQVTD----ALDIDVTGGEQDCDLPTWQRMIDMRAVDIVQPDILYLGGICRTLRVVEMARAAGLPVTPHCAN-W 311 (388)
T ss_dssp TCHHHHHHHHH----HCSSCEEECTTCCCHHHHHHHHHHTCCSEECCCHHHHTSHHHHHHHHHHHHHTTCCBCCCCCS-T
T ss_pred cCHHHHHHHHH----hcCCCEEcCCccCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEecCCC-c
Confidence 99999999875 68899999999999999999999999999999999997 999999999999999999999984 5
Q ss_pred HHHHHHHHHHHccCCCC-ceeccc--cc--cccccCCC-CCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 348 RLAMGFAGHLSAGLGCF-KFIDLD--TP--LLLSEDPV-LDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 348 ~i~~~~~~hlaaa~~~~-~~~e~~--~p--~~~~~d~~-~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
+++.++++|+++++||+ .++|+. ++ ..+.++++ .++++++||++.+|++||||+++|++.|
T Consensus 312 ~~~~~a~~hl~aa~pn~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~G~i~vp~~PGLGveld~~~l 378 (388)
T 3tcs_A 312 SLVTLFTMHLLRAIPNAGKYLEFSIEGPDYYPWQEGLFVKTPYEIEDGHARVTDAPGWGVEISPEWL 378 (388)
T ss_dssp TTHHHHHHHHHTTCTTBCSCEEEECCCTTTCGGGTTCBSSCSCCCBTTEEEECSSSBTCCCBCHHHH
T ss_pred HHHHHHHHHHHHhCCCccceeEeecCcccccchhhhhccCCCceeeCCEEECCCCCCCCCeECHHHH
Confidence 67778899999999997 466643 21 12345665 6678899999999999999999999876
|
| >3pfr_A Mandelate racemase/muconate lactonizing protein; emolase superfamily fold, D-glucarate dehydratase, D-glucara isomerase; HET: GKR; 1.90A {Actinobacillus succinogenes} PDB: 3n6j_A 3n6h_A* 4gyp_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-66 Score=525.52 Aligned_cols=346 Identities=18% Similarity=0.216 Sum_probs=297.3
Q ss_pred eeeEeEEEEEEEEecCccceeeccceee-eeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCC
Q 015289 45 TVDVQRAENRPLNVPLIAPFTIATSRLD-QVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA 123 (409)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~p~~~a~~~~~-~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~ 123 (409)
+|||++|+++++..+ ..++.+..|... .....+|+|+||+|++||||+.. .+... ..++++.|+|+|+++
T Consensus 8 ~~~It~v~v~~v~~~-d~~~~~~~g~h~~~~~~~iV~v~td~Gi~G~GE~~~-----~~~v~---~~i~~l~p~LiG~dp 78 (455)
T 3pfr_A 8 VPVITDMKVIPVAGH-DSMLMNVGGAHSPYFTRNIVILTDNSGHTGVGEAPG-----GATIE---NALTEAIPHVVGRPI 78 (455)
T ss_dssp CCBEEEEEEEEEEEE-CCCBEETTEECCSEEEEEEEEEEETTSCEEEEEEEC-----SHHHH---HHHHHHGGGTTTCBG
T ss_pred CCEEEEEEEEEeccC-CccccccccCCCCcceEEEEEEEECCCCEEEEeCCC-----cHHHH---HHHHHHHHHhcCCCh
Confidence 589999999999998 667776666533 46778999999999999999853 23332 234568999999999
Q ss_pred CCHHHHHHHHHh--hcCCC-----h------hhHHHHHHHHHHHHHHHhhcCCchHHHhC-CC-CCeeeeeeeec-----
Q 015289 124 MALGSVFGVVAG--LLPGH-----Q------FASVRAAVEMALIDAVAKSVSMPLWRLFG-GV-SNTITTDITIP----- 183 (409)
Q Consensus 124 ~~~~~~~~~~~~--~~~g~-----~------~~~a~said~AlwDl~gk~~g~Pl~~LLG-g~-~~~i~~~~~i~----- 183 (409)
.+++.+|+.+++ .+.++ . ...|+||||+|||||+||.+|+|||+||| |+ +++||+|.+..
T Consensus 79 ~~ie~i~~~~~~~~~~~~~~~g~~G~~~~~~~~~A~sAID~ALWDl~gK~~g~Pv~~LLGgG~~r~~v~~y~~~~~~gd~ 158 (455)
T 3pfr_A 79 SILNKIVNDMHNGYLDADYDTFGKGAWTFELRVNAVAALEAALLDLMGQFLGVPVAELLGPGKQRDEVTVLGYLFYVGDD 158 (455)
T ss_dssp GGHHHHHHHHHC---------------CHHHHHHHHHHHHHHHHHHHHHHHTSBGGGGSTTSCCCSEEEBCEEECCBCCG
T ss_pred hHHHHHHHHHHhhccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCcCCeEEEeeeecccccc
Confidence 999999999987 44211 1 15689999999999999999999999999 65 57899875421
Q ss_pred ------------------------CCCHHHHHHHHHHHHH-cCCCeEEEecCC-ChhHHHHHHHHHHhhCCCcEEEEeCC
Q 015289 184 ------------------------IVSPAEAAELASKYRK-QGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDAN 237 (409)
Q Consensus 184 ------------------------~~~~~~~~~~~~~~~~-~Gf~~~KiKvG~-~~~~d~~~l~avr~~~~~~~l~vDaN 237 (409)
..++++++++++++++ +||++||+|+|. ++++|++++++||+++|++.|++|+|
T Consensus 159 ~~~~~~~~~s~~~~~~w~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~~~~~Di~~v~avRea~pd~~L~vDaN 238 (455)
T 3pfr_A 159 KITDLPYQQPVTGKHEWYDIRRKKAMDTQAVIELAAASKDRYGFKDFKLKGGVFEGSKEIDTVIELKKHFPDARITLDPN 238 (455)
T ss_dssp GGSCSCCCCCCCSSCTHHHHTTSCBCSHHHHHHHHHHHHHHHCCSCEEEECSSSCHHHHHHHHHHHHHHCTTCCEEEECT
T ss_pred ccccccccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCHHHHHHHHHHHHHhCCCCeEeecCC
Confidence 2578999999999887 699999999995 78999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCceeecCCCCCC----HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEE
Q 015289 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD----WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 313 (409)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d----~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div 313 (409)
++|++++|+++++.|+++ + .|||||++++| ++++++|++ ++++|||+||++.+..+++++++.+++|++
T Consensus 239 ~~w~~~~A~~~~~~L~~~-l--~~iEeP~~~~d~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~di~ 311 (455)
T 3pfr_A 239 GCWSLDEAIQLCKGLNDV-L--TYAEDPCIGENGYSGREIMAEFRR----RTGIPTATNMIATNWREMCHAIMLQSVDIP 311 (455)
T ss_dssp TBSCHHHHHHHHTTCTTT-C--SEEESCBCCBTTBCHHHHHHHHHH----HHCCCEEESSSCCSHHHHHHHHHHTCCSEE
T ss_pred CCCCHHHHHHHHHhhccc-c--eeeecCCChhhccchHHHHHHHHh----cCCCCEEeCCCcCCHHHHHHHHHcCCCCEE
Confidence 999999999999999998 6 49999999998 688999875 678999999999999999999999999999
Q ss_pred EeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceeccccccccc---cCCCCCCeeeeCc
Q 015289 314 NIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLS---EDPVLDGYEVSGA 389 (409)
Q Consensus 314 ~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~p~~~~---~d~~~~~~~~~~G 389 (409)
|+|+ ++| ++++++++++|+++|+++++|++.++++++++++|+++++||. +.+++.++.+. ++++.++++++||
T Consensus 312 ~~d~-~~GGit~a~kia~lA~a~gv~~~~h~~~~~~i~~aa~~hlaaa~p~~-~~~~d~~~~~~~~~~~l~~~p~~~~dG 389 (455)
T 3pfr_A 312 LADP-HFWTLTGASRVAQLCNEWGLTWGCHSNNHFDISLAMFSHVGAAAPGN-PTALDTHWIWQEGDFYLTKNPLEIKDG 389 (455)
T ss_dssp BCCH-HHHCHHHHHHHHHHHHHTTCCCBCCCCSCCHHHHHHHHHHHHHCCSC-CCCBCCCGGGTTTTCCSBSSCCCEETT
T ss_pred EecC-CcCCHHHHHHHHHHHHHcCCEEEecCCcccHHHHHHHHHHHHhCCCc-chhhccccccccchhhccCCCCeEECC
Confidence 9998 676 9999999999999999999999999999999999999999986 34455443322 4677888899999
Q ss_pred EEecCCCCCcccccCCCCc
Q 015289 390 VYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 390 ~i~~p~~PGlG~~~d~d~~ 408 (409)
++.+|++||||+++|++.|
T Consensus 390 ~i~vp~~PGLGveld~~~l 408 (455)
T 3pfr_A 390 KIKLNDKPGLGIELNMDNV 408 (455)
T ss_dssp EEECCSCSBTCCCBCHHHH
T ss_pred EEeCCCCCcCCcccCHHHH
Confidence 9999999999999999876
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-65 Score=514.75 Aligned_cols=345 Identities=19% Similarity=0.206 Sum_probs=299.5
Q ss_pred eeeeEeEEEEEEEEecCccceeeccc------eeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHH
Q 015289 44 FTVDVQRAENRPLNVPLIAPFTIATS------RLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEV 117 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p~~~a~~------~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~ 117 (409)
..|||++|+++.+++|++.||+++.+ +.+.++.++|+|+|++|++||||++ .+.++.+.+. ..++.++|.
T Consensus 11 ~~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~~~~~v~V~v~td~G~~G~GE~~-~~~~~~~~~~---~~i~~l~~~ 86 (393)
T 2og9_A 11 PSDRITWVRISSCYLPLATPISDAKVLTGRQKPMTEIAILFAEIETAGGHQGLGFSY-SKRAGGPGQF---AHAREIAPA 86 (393)
T ss_dssp CCCCEEEEEEEEEEEECSSCCC------------CEEEEEEEEEEETTSCEEEEEEE-EESTTHHHHH---HHHHHHGGG
T ss_pred CCCeEeEEEEEEEeccCCCccccccccccccCCcCCccEEEEEEEECCCCEEEEEec-CcccchHHHH---HHHHHHHHH
Confidence 34999999999999999999999976 6778899999999999999999994 2334443322 234568999
Q ss_pred HcCCCCCCHHHHHHHHHhhc--CCC--hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecC--C-CHHHH
Q 015289 118 LKESPAMALGSVFGVVAGLL--PGH--QFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI--V-SPAEA 190 (409)
Q Consensus 118 l~g~~~~~~~~~~~~~~~~~--~g~--~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~--~-~~~~~ 190 (409)
|+|+++.+++.+|+.+.+.. .++ ..+.|++||||||||+.||..|+|+|+||||.++++|+|.+++. . +++++
T Consensus 87 l~G~d~~~~~~i~~~l~~~~~~~~~~~~~~~A~~aid~AlwDl~gk~~g~Pl~~llGg~~~~vp~y~~~g~~~~~~~e~~ 166 (393)
T 2og9_A 87 LIGEDPSDIAKLWDKLCWAGASAGRSGLSTQAIGAFDVALWDLKAKRAGLSLAKLLGSYRDSVRCYNTSGGFLHTPIDQL 166 (393)
T ss_dssp GTTSCTTCHHHHHHHHHHTTGGGCSSSHHHHHHHHHHHHHHHHHHHHTTCBHHHHHCCSCSEEEEEBCTTCCTTSCHHHH
T ss_pred HcCCChhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceEEEEECCCcCCCCHHHH
Confidence 99999999999999987642 222 23579999999999999999999999999999889999988533 3 89999
Q ss_pred HHHHHHHHHcCCCeEEEecCC-ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCC
Q 015289 191 AELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR 268 (409)
Q Consensus 191 ~~~~~~~~~~Gf~~~KiKvG~-~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~ 268 (409)
.+.+++++++||+.+|+|+|. +++.|++++++||++ ++++.|++|+|++|+.++|+++++.|+++++. |||||+++
T Consensus 167 ~~~a~~~~~~Gf~~vKik~g~~~~~~~~e~v~avR~avg~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~--~iE~P~~~ 244 (393)
T 2og9_A 167 MVNASASIERGIGGIKLKVGQPDGALDIARVTAVRKHLGDAVPLMVDANQQWDRPTAQRMCRIFEPFNLV--WIEEPLDA 244 (393)
T ss_dssp HHHHHHHHHTTCCCEEEECCCSCHHHHHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCCS--CEECCSCT
T ss_pred HHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCC--EEECCCCc
Confidence 999999999999999999994 789999999999997 89999999999999999999999999999874 99999999
Q ss_pred CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCch
Q 015289 269 DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVET 347 (409)
Q Consensus 269 ~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es 347 (409)
+|++++++|++ ++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.+
T Consensus 245 ~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~gi~~~~h~~~~- 319 (393)
T 2og9_A 245 YDHEGHAALAL----QFDTPIATGEMLTSAAEHGDLIRHRAADYLMPDAPRVGGITPFLKIASLAEHAGLMLAPHFAME- 319 (393)
T ss_dssp TCHHHHHHHHH----HCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTSHHHHHHHHHHHHHTTCEECCCSCHH-
T ss_pred ccHHHHHHHHH----hCCCCEEeCCCcCCHHHHHHHHHCCCCCEEeeCccccCCHHHHHHHHHHHHHcCCEEeccCccH-
Confidence 99999999875 57899999999999999999999999999999999997 9999999999999999999999754
Q ss_pred HHHHHHHHHHHccCCCCceeccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCC
Q 015289 348 RLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDN 407 (409)
Q Consensus 348 ~i~~~~~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~ 407 (409)
.++|++++++++.+.|+. + +.++++.++++++||++.+|++||||+++|++.
T Consensus 320 -----~~~~laaa~~~~~~~e~~-~--~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~ 371 (393)
T 2og9_A 320 -----LHVHLAAAYPREPWVEHF-E--WLEPLFNERIEIRDGRMLVPTRPGLGLTLSGQV 371 (393)
T ss_dssp -----HHHHHHHTSSSCCEEECC-C--TTGGGBSCCCCEETTEEECCCSSBTCCCBCTHH
T ss_pred -----HHHHHHhhCCCCceeecc-c--chHHHccCCCeeeCCEEECCCCCCCCeeeCHHH
Confidence 468999999999888864 2 234567778899999999999999999999874
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-65 Score=514.39 Aligned_cols=344 Identities=20% Similarity=0.251 Sum_probs=303.6
Q ss_pred eeeeEeEEEEEEEEecCccceeeccc------eeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHH
Q 015289 44 FTVDVQRAENRPLNVPLIAPFTIATS------RLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEV 117 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p~~~a~~------~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~ 117 (409)
+.|||++|+++.+++|++.||+++.+ +.+.++.++|+|+|++|++||||+. .+.++.+.+. ..++.++|.
T Consensus 24 ~~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~~~~~v~V~v~td~G~~G~GE~~-~~~~~~~~~~---~~~~~l~p~ 99 (398)
T 2pp0_A 24 TGDRIEWVKLSLAFLPLATPVSDAKVLTGRQKPLTEVAIIIAEIRSRDGFEGVGFSY-SKRAGGQGIY---AHAKEIADN 99 (398)
T ss_dssp HSCCEEEEEEEEEEEEEEEEECCHHHHTTSSCCEEEEEEEEEEEEETTSCEEEEEEE-ESSTTHHHHH---HHHHHHGGG
T ss_pred CCCeEEEEEEEEEeccCCCcccccccccccccccCCCcEEEEEEEECCCCEEEEEec-CccchHHHHH---HHHHHHHHH
Confidence 56999999999999999999999865 6778899999999999999999994 3334343222 224558899
Q ss_pred HcCCCCCCHHHHHHHHHhhc--CCC--hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecC--C-CHHHH
Q 015289 118 LKESPAMALGSVFGVVAGLL--PGH--QFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI--V-SPAEA 190 (409)
Q Consensus 118 l~g~~~~~~~~~~~~~~~~~--~g~--~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~--~-~~~~~ 190 (409)
|+|+++.+++.+|+.+.+.. .++ ..+.|++||||||||+.||..|+|+|+||||.++++|+|.+++. . +++++
T Consensus 100 l~G~d~~~~~~i~~~l~~~~~~~~~~~~~~~A~~aid~AlwDl~ak~~g~Pl~~lLGg~~~~vp~y~~~g~~~~~~~e~~ 179 (398)
T 2pp0_A 100 LLGEDPNDIDKIYTKLLWAGASVGRSGMAVQAISPIDIALWDMKAKRAGLPLAKLLGAHRDSVQCYNTSGGFLHTPLDQV 179 (398)
T ss_dssp GTTSCTTCHHHHHHHHHHHTGGGCSSTHHHHHHHHHHHHHHHHHHHHTTSBHHHHHCCSCSEEEEEECTTSCTTSCHHHH
T ss_pred HcCCCchhHHHHHHHHHHhhcccCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeeEEEecCCcCCCCHHHH
Confidence 99999999999999887642 232 23578999999999999999999999999998889999988533 3 89999
Q ss_pred HHHHHHHHHcCCCeEEEecCC-ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCC
Q 015289 191 AELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR 268 (409)
Q Consensus 191 ~~~~~~~~~~Gf~~~KiKvG~-~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~ 268 (409)
.+.+++++++||+.+|+|+|. +++.|++++++||++ ++++.|++|+|++|+.++|+++++.|+++++. |||||+++
T Consensus 180 ~~~a~~~~~~Gf~~vKik~g~~~~~~d~e~v~avR~avG~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~--~iEqP~~~ 257 (398)
T 2pp0_A 180 LKNVVISRENGIGGIKLKVGQPNCAEDIRRLTAVREALGDEFPLMVDANQQWDRETAIRMGRKMEQFNLI--WIEEPLDA 257 (398)
T ss_dssp HHHHHHHHHTTCSCEEEECCCSCHHHHHHHHHHHHHHHCSSSCEEEECTTCSCHHHHHHHHHHHGGGTCS--CEECCSCT
T ss_pred HHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCCc--eeeCCCCh
Confidence 999999999999999999994 789999999999997 89999999999999999999999999999874 99999999
Q ss_pred CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCch
Q 015289 269 DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVET 347 (409)
Q Consensus 269 ~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es 347 (409)
+|++++++|++ ++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.+
T Consensus 258 ~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGite~~~i~~~A~~~gi~~~~h~~~~- 332 (398)
T 2pp0_A 258 YDIEGHAQLAA----ALDTPIATGEMLTSFREHEQLILGNASDFVQPDAPRVGGISPFLKIMDLAAKHGRKLAPHFAME- 332 (398)
T ss_dssp TCHHHHHHHHH----HCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTSHHHHHHHHHHHHHTTCEECCCSCHH-
T ss_pred hhHHHHHHHHh----hCCCCEEecCCcCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEeecCccH-
Confidence 99999999975 57899999999999999999999999999999999997 9999999999999999999998754
Q ss_pred HHHHHHHHHHHccCCCCceeccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCC
Q 015289 348 RLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWD 406 (409)
Q Consensus 348 ~i~~~~~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d 406 (409)
.++|++++++++.++|+.. +.++++.++++++||++.+|++||||+++|++
T Consensus 333 -----~~~~laaa~~~~~~~e~~~---~~~~~~~~~~~~~~G~i~~p~~PGlGv~~d~~ 383 (398)
T 2pp0_A 333 -----VHLHLSAAYPLEPWLEHFE---WLNPLFNEQLELRDGRMWISDRHGLGFTLSEQ 383 (398)
T ss_dssp -----HHHHHHHTCSSCCCEEECS---TTGGGBSCCCEEETTEEECCSSSBTCCCBCHH
T ss_pred -----HHHHHHhcCCCcceeeccc---chhhhccCCCeeeCCEEECCCCCCCCcccCHH
Confidence 3689999999998888642 23456777889999999999999999999987
|
| >4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-65 Score=521.30 Aligned_cols=353 Identities=19% Similarity=0.224 Sum_probs=291.0
Q ss_pred ceeeeEeEEEEEEEEecCccceeeccce--eeeeeEEEEEEEECC--CceEEEEeccCCccCcccHHHHHHHHHHHHHHH
Q 015289 43 TFTVDVQRAENRPLNVPLIAPFTIATSR--LDQVENVAIRIELSN--GCVGWGEAPVLPHVTAEDQQTAMVKASEACEVL 118 (409)
Q Consensus 43 ~~~mkI~~i~~~~~~~pl~~p~~~a~~~--~~~~~~~iVrl~td~--G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l 118 (409)
+..|||++|+++.+++|++.|+..+.+. ....+.++|+|+||+ |++||||+.+.+ +..+.+...++.+.|+|
T Consensus 2 m~~mkI~~i~~~~v~~p~~~~~~~s~~~~~~~~~~~~~V~i~Td~~dG~~G~Ge~~~~g----~~~~~~~~~i~~l~~~l 77 (441)
T 4a35_A 2 MVRGRISRLSVRDVRFPTSLGGHGADAMHTDPDYSAAYVVIETDAEDGIKGCGITFTLG----KGTEVVVCAVNALAHHV 77 (441)
T ss_dssp CCCCBEEEEEEEEEECCGGGTTCCCCSSCSSCCCEEEEEEEEESSCSCCCEEEEEEECS----TTHHHHHHHHHHHGGGT
T ss_pred CCCCEEEEEEEEEEEecCCCCCCCccceeccCcceEEEEEEEECCCCCCEEEEeeeCCC----CChHHHHHHHHHHHHHh
Confidence 3468999999999999999888765443 345689999999998 999999998642 12222233346689999
Q ss_pred cCCCCCCHHHHHHHHHhhc--------CCC---hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCC-------------
Q 015289 119 KESPAMALGSVFGVVAGLL--------PGH---QFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSN------------- 174 (409)
Q Consensus 119 ~g~~~~~~~~~~~~~~~~~--------~g~---~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~------------- 174 (409)
+|++|.+++.+|+.+++.+ .|+ ....|+||||+|||||+||.+|+|||+||||+.+
T Consensus 78 iG~d~~~i~~~~~~~~~~l~~~~~~~~~g~~~g~~~~A~saID~ALwDl~gK~~g~Pv~~LLGG~~r~~i~~~~~~~y~~ 157 (441)
T 4a35_A 78 LNKDLKDIVGDFRGFYRQLTSDGQLRWIGPEKGVVHLATAAVLNAVWDLWAKQEGKPVWKLLVDMDPRMLVSCIDFRYIT 157 (441)
T ss_dssp TTCBHHHHHTTHHHHHHHHHSCTTGGGGCSSSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHSCHHHHHTTCCCTTTT
T ss_pred CCCCHHHHHHHHHHHHHHHhhccceeecCCCccHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCcccceecccccccc
Confidence 9999999865554443321 122 2356899999999999999999999999999742
Q ss_pred -----------------------------eeeeeeee-c--CCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHH
Q 015289 175 -----------------------------TITTDITI-P--IVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRA 222 (409)
Q Consensus 175 -----------------------------~i~~~~~i-~--~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~a 222 (409)
.+|.|.+. + ..+++++.+.+++++++||++||+|+|.++++|++++++
T Consensus 158 d~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~p~y~~~~g~~~~~~e~~~~~a~~~~~~Gf~~~KlKvG~~~~~d~~~v~a 237 (441)
T 4a35_A 158 DVLTEEDALEILQKGQIGKKEREKQMLAQGYPAYTTSCAWLGYSDDTLKQLCAQALKDGWTRFKVKVGADLQDDMRRCQI 237 (441)
T ss_dssp TTCCHHHHHHHHHHTTTTHHHHHHHHHHHCEEEEECTTCCTTCCHHHHHHHHHHHHHTTCCEEEEECSSCHHHHHHHHHH
T ss_pred cccchhhhhhhhhhcccccchhhhhhcccCcceEEeccccCCCCHHHHHHHHHHHHHCCCCEEEEcCCCCHHHHHHHHHH
Confidence 26777653 2 348999999999999999999999999999999999999
Q ss_pred HHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHH
Q 015289 223 IRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDV 301 (409)
Q Consensus 223 vr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~ 301 (409)
||++ +|++.|++|+|++|++++|++++++|+++++ .|||||++++|++++++|++.++ .+++||++||++++..++
T Consensus 238 vR~a~G~~~~l~vDaN~~~~~~~A~~~~~~L~~~~~--~~iEeP~~~~d~~~~~~l~~~l~-~~~iPIa~gE~~~~~~~~ 314 (441)
T 4a35_A 238 IRDMIGPEKTLMMDANQRWDVPEAVEWMSKLAKFKP--LWIEEPTSPDDILGHATISKALV-PLGIGIATGEQCHNRVIF 314 (441)
T ss_dssp HHHHHCTTSEEEEECTTCCCHHHHHHHHHHHGGGCC--SEEECCSCTTCHHHHHHHHHHHG-GGTCEEEECTTCCSHHHH
T ss_pred HHHHhCCCCeEEEECCCCCCHHHHHHHHHhhcccCc--cEEeCCCCcccHHHHHHHHHhcc-CCCCCEEeCCccccHHHH
Confidence 9998 8999999999999999999999999999986 59999999999999999975221 278999999999999999
Q ss_pred HHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHH-HHHH-------ccCCCCceeccccc
Q 015289 302 KKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFA-GHLS-------AGLGCFKFIDLDTP 372 (409)
Q Consensus 302 ~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~-~hla-------aa~~~~~~~e~~~p 372 (409)
+++++.+++|++|+|++++| ++++++++++|+++|+++++|+. +++++++ .|++ ++.++..++|+..+
T Consensus 315 ~~~l~~~a~div~~d~~~~GGit~~~kia~lA~~~gv~v~~H~~---~ig~aa~~~hl~~~~~~~l~~~~~~~~~E~~~~ 391 (441)
T 4a35_A 315 KQLLQAKALQFLQIDSCRLGSVNENLSVLLMAKKFEIPVCPHAG---GVGLCELVQHLIIFDYISVSASLENRVCEYVDH 391 (441)
T ss_dssp HHHHHTTCCSEECCCTTTSSHHHHHHHHHHHHHHTTCCBCCCCC---TTTHHHHHHHHHHHHHHHTSCCCTTCCEEECCS
T ss_pred HHHHHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCEEEEeCC---hHHHHHHHHHHhhhhhcccccCcccceeeccch
Confidence 99999999999999999998 99999999999999999999963 4555443 3553 23334446665432
Q ss_pred cccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 373 LLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 373 ~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
.++++.++++++||++.+|++||||+++|++.+
T Consensus 392 ---~~~~~~~p~~~~dG~i~vp~~PGLGveld~~~l 424 (441)
T 4a35_A 392 ---LHEHFKYPVMIQRASYMPPKDPGYSTEMKEESV 424 (441)
T ss_dssp ---SGGGBSSCCEESSSEEECCCSSBCSCCBCHHHH
T ss_pred ---hhhcccCCceeeCCEEECCCCCcCCcccCHHHH
Confidence 356778888999999999999999999999875
|
| >2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-65 Score=516.21 Aligned_cols=348 Identities=18% Similarity=0.254 Sum_probs=298.9
Q ss_pred eeeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCC
Q 015289 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA 123 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~ 123 (409)
++|||++|+++.+.+|++.|++. ...++|||+|++|++||||+.+..+.+.+ .+...++++.|.|+|+++
T Consensus 2 ~~MkI~~i~~~~~~~p~~~p~~~-------~~~v~V~v~td~G~~G~Ge~a~~~g~~~~---~~~~~i~~l~p~liG~d~ 71 (407)
T 2o56_A 2 SLMKITSVDIIDVANDFASATSK-------WRPVVVKINTDEGISGFGEVGLAYGVGAS---AGIGMAKDLSAIIIGMDP 71 (407)
T ss_dssp -CCCEEEEEEEECCCCC-----C-------CCCEEEEEEETTSCEEEEEESCSSSSCHH---HHHHHHHHHHHHHTTSCT
T ss_pred CCCEEEEEEEEEeccccCCCccc-------ceeEEEEEEeCCCCEEEEeeccCCCCchH---HHHHHHHHHHHHhCCCCh
Confidence 34999999999999999998642 24689999999999999999432222233 334445668899999999
Q ss_pred CCHHHHHHHHHhhcC----CC-hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeee-ec--CC---------
Q 015289 124 MALGSVFGVVAGLLP----GH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDIT-IP--IV--------- 185 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~----g~-~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~-i~--~~--------- 185 (409)
.+++.+|+.+.+... +. ....|++||||||||+.||..|+|+|+||||. ++++|+|.+ ++ ..
T Consensus 72 ~~~~~i~~~l~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~~vp~y~~~i~~g~~~~~~~~~~~ 151 (407)
T 2o56_A 72 MNNEAIWEKMLKKTFWGQGGGGIFSAAMSGIDIALWDIKGKAWGVPLYKMLGGKSREKIRTYASQLQFGWGDGSDKDMLT 151 (407)
T ss_dssp TCHHHHHHHHHHSSSGGGGCBHHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSSEEEEEECGGGCCSTTCTTCCCC
T ss_pred HHHHHHHHHHHHhccccCCCchHHHhHHHHHHHHHHHHhhhhcCCcHHHHcCCCCCCeeeeeeeeccCCccccccccccC
Confidence 999999999976432 11 13578999999999999999999999999996 568999987 63 34
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEec------CC-------------ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHH
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKV------GK-------------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEA 245 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKv------G~-------------~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A 245 (409)
+++++.+.+++++++||+++|+|+ |. +++.|++++++||++ ++++.|++|+|++|+.++|
T Consensus 152 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s~~~~~~~~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a 231 (407)
T 2o56_A 152 EPEQYAQAALTAVSEGYDAIKVDTVAMDRHGNWNQQNLNGPLTDKILRLGYDRMAAIRDAVGPDVDIIAEMHAFTDTTSA 231 (407)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSSBCTTSCBSCSCCCSSCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcccccCCcCccccCcccCCCchhHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHH
Confidence 899999999999999999999997 53 467899999999997 8999999999999999999
Q ss_pred HHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHH
Q 015289 246 VEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLG 324 (409)
Q Consensus 246 ~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~ 324 (409)
+++++.|+++++ .|||||++++|++++++|++ ++++||++||+++++++++++++.+++|++|+|++++| +++
T Consensus 232 ~~~~~~l~~~~i--~~iE~P~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGite 305 (407)
T 2o56_A 232 IQFGRMIEELGI--FYYEEPVMPLNPAQMKQVAD----KVNIPLAAGERIYWRWGYRPFLENGSLSVIQPDICTCGGITE 305 (407)
T ss_dssp HHHHHHHGGGCC--SCEECSSCSSSHHHHHHHHH----HCCSCEEECTTCCHHHHHHHHHHTTCCSEECCCTTTTTHHHH
T ss_pred HHHHHHHHhcCC--CEEeCCCChhhHHHHHHHHH----hCCCCEEeCCCcCCHHHHHHHHHcCCCCEEecCccccCCHHH
Confidence 999999999987 49999999999999999975 57899999999999999999999999999999999998 999
Q ss_pred HHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceeccccc--cccccCCCCCCeeeeCcEEecCCCCCcccc
Q 015289 325 ALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTP--LLLSEDPVLDGYEVSGAVYKFTNARGHGGF 402 (409)
Q Consensus 325 ~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~p--~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~ 402 (409)
+++++++|+++|+++++|++. |++++++++||+++++|+.++|+... ..+.+|++.++++++||++.+|++||||++
T Consensus 306 ~~~i~~~A~~~g~~~~~h~~~-s~i~~aa~~hlaaa~~~~~~~e~~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~ 384 (407)
T 2o56_A 306 VKKICDMAHVYDKTVQIHVCG-GPISTAVALHMETAIPNFVIHELHRYALLEPNTQTCKYNYLPKNGMYEVPELPGIGQE 384 (407)
T ss_dssp HHHHHHHHHTTTCEECCCCCS-CHHHHHHHHHHHHHCTTBCCEEEEGGGGSHHHHTTBSCCCCCBTTEECCCCSSBTSCC
T ss_pred HHHHHHHHHHcCCeEeecCCC-CHHHHHHHHHHHHhCCCceeEeeccccccccHHHhccCCceecCCEEECCCCCCCCce
Confidence 999999999999999999995 99999999999999999988887421 113568888888999999999999999999
Q ss_pred cCCCCc
Q 015289 403 LHWDNI 408 (409)
Q Consensus 403 ~d~d~~ 408 (409)
+|++.+
T Consensus 385 ~d~~~l 390 (407)
T 2o56_A 385 LTEETM 390 (407)
T ss_dssp BCHHHH
T ss_pred eCHHHH
Confidence 999865
|
| >2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-65 Score=510.11 Aligned_cols=343 Identities=18% Similarity=0.228 Sum_probs=298.9
Q ss_pred eeeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHH-HHcCCC
Q 015289 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACE-VLKESP 122 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~-~l~g~~ 122 (409)
|+|||++|+++.+. |. ++ ..++|+|+|++|++||||+.+. | +++.+.+...++.+.| .|+|++
T Consensus 1 m~mkI~~i~~~~v~-~~--~~----------~~v~V~v~td~G~~G~GE~~~~--~-g~~~~~~~~~i~~l~~~~l~G~d 64 (392)
T 2poz_A 1 MSLKITGVNIYLLK-SG--RL----------HPVLVEISTDEGITGAGEAGIA--Y-GVGGTAAAGMIKDLSERFLIGKD 64 (392)
T ss_dssp --CCEEEEEEEECC-BT--TB----------CCEEEEEEETTSCCEEEEESCS--S-SSCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCeEEEEEEEEEe-cC--Cc----------cEEEEEEEECCCCEEEEeecCC--c-CCchHHHHHHHHHhhHhhhcCCC
Confidence 46999999999987 43 22 2789999999999999999753 2 4444455555667889 999999
Q ss_pred CCCHHHHHHHHHhhcCC----Ch-hhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeee--e-cCCCHHHHHHH
Q 015289 123 AMALGSVFGVVAGLLPG----HQ-FASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDIT--I-PIVSPAEAAEL 193 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~g----~~-~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~--i-~~~~~~~~~~~ 193 (409)
+.+++.+|+.+.+...+ .. .+.|++||||||||+.||..|+|||+||||. ++++|+|.+ . +..+++++.+.
T Consensus 65 ~~~~~~i~~~l~~~~~~~~~~~~~~~~A~~aid~AlwDl~gk~~g~Pl~~lLGg~~~~~v~~y~~g~~~~~~~~~~~~~~ 144 (392)
T 2poz_A 65 PSRIEELWSTMYDHSFWAKNGGAIIFAGISAIEQALWDIKGKCLGVPVYELFGGKIRDRVRAYANGWYGAADTPDEFARA 144 (392)
T ss_dssp TTCHHHHHHHHHHHSSTTTTCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSEEEEEECSCCTTCCSHHHHHHH
T ss_pred hhHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhhhhcCCcHHHHcCCCccCceEEEEeccccCCCCHHHHHHH
Confidence 99999999999765322 11 3578999999999999999999999999997 568999975 2 24689999999
Q ss_pred HHHHHHcCCCeEEEecC------------------CChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHh
Q 015289 194 ASKYRKQGFTTLKLKVG------------------KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE 254 (409)
Q Consensus 194 ~~~~~~~Gf~~~KiKvG------------------~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~ 254 (409)
+++++++||+++|+|+| .+++.|++++++||++ ++++.|++|+|++|+.++|+++++.|++
T Consensus 145 a~~~~~~Gf~~vKik~g~~~~g~~~~~~~~gg~~~~~~~~~~e~v~avr~a~G~d~~l~vD~n~~~~~~~a~~~~~~l~~ 224 (392)
T 2poz_A 145 VERPLKEGYGALKFYPLAQRVGSALQHVTRRSMSAEAIELAYRRVKAVRDAAGPEIELMVDLSGGLTTDETIRFCRKIGE 224 (392)
T ss_dssp THHHHHTTCSEEEECCCCEEETTEEECCBTTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGG
T ss_pred HHHHHHcCCCEEEEecccccccccccccccCCcchhhHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999998 2467899999999997 8999999999999999999999999999
Q ss_pred CCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHH
Q 015289 255 MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVR 333 (409)
Q Consensus 255 ~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~ 333 (409)
+++ .|||||++++|++++++|++ ++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+
T Consensus 225 ~~i--~~iE~P~~~~~~~~~~~l~~----~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~ 298 (392)
T 2poz_A 225 LDI--CFVEEPCDPFDNGALKVISE----QIPLPIAVGERVYTRFGFRKIFELQACGIIQPDIGTAGGLMETKKICAMAE 298 (392)
T ss_dssp GCE--EEEECCSCTTCHHHHHHHHH----HCSSCEEECTTCCHHHHHHHHHTTTCCSEECCCTTTSSCHHHHHHHHHHHH
T ss_pred cCC--CEEECCCCcccHHHHHHHHh----hCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHH
Confidence 986 59999999999999999975 57899999999999999999999999999999999998 999999999999
Q ss_pred HcCCcEEEccCCchHHHHHHHHHHHccCCCCceecccc--cc-ccccCCCCCCeeeeCcEEecCCCCCcccccCCCCcC
Q 015289 334 ASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDT--PL-LLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409 (409)
Q Consensus 334 ~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~--p~-~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~~ 409 (409)
++|+++++|++. |++++++++||+++++|+.++|++. .+ .+.+|++.++++++||++.+|++||||+++|++.++
T Consensus 299 ~~g~~~~~h~~~-s~i~~aa~~hlaaa~~~~~~~e~~~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~ 376 (392)
T 2poz_A 299 AYNMRVAPHVCG-SSLIETATLQLEANITNFMIHEHYPAFKADDGYVEVLENPPSISSGYFEMPNGPGLGAVLIKRNIE 376 (392)
T ss_dssp TTTCEECCCCCS-SHHHHHHHHHHHHHCTTBCCEEECGGGGGSTTCCCCBSSCCCEETTEEECCCSSBTSCCBCHHHHG
T ss_pred HcCCeEecCCCC-CHHHHHHHHHHHHhCCCceEEeeccccccCchHHHhccCCCeecCCEEECCCCCCCCceeCHHHHH
Confidence 999999999997 9999999999999999998888652 11 234788888889999999999999999999998753
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-65 Score=513.16 Aligned_cols=350 Identities=17% Similarity=0.233 Sum_probs=301.8
Q ss_pred eeeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCC
Q 015289 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA 123 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~ 123 (409)
|+|||++|+++.+.+|++++.. +. ...++|||+|++|++||||+.+..+.+.+ .+...++++.|.|+|+++
T Consensus 1 m~MkI~~i~~~~~~~pl~~~~~---~~---~~~v~V~v~td~G~~G~Ge~~~~~g~~~~---~~~~~i~~l~p~liG~d~ 71 (410)
T 2gl5_A 1 MSLKITSIEVFDCELKKRDQTM---SS---YNPVLIRVNTDSGLSGIGEVGLAYGAGAK---AGVGIIRDLAPLIVGEDP 71 (410)
T ss_dssp -CCCEEEEEEEECCGGGTCGGG---TT---CCCEEEEEEETTSCEEEEEESCSSSTTHH---HHHHHHHHHGGGTTTSCT
T ss_pred CCceEEEEEEEEecccccccCc---cc---ccceEEEEEeCCCCEEEEeecCcCCCChH---HHHHHHHHHHHHhCCCCh
Confidence 5699999999999999876431 11 13579999999999999999332222233 333445668899999999
Q ss_pred CCHHHHHHHHHhhcC----CC-hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeee-ec--CC-------CH
Q 015289 124 MALGSVFGVVAGLLP----GH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDIT-IP--IV-------SP 187 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~----g~-~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~-i~--~~-------~~ 187 (409)
.+++.+|+.+.+... +. ..+.|++||||||||+.||.+|+|||+||||. ++++|+|.+ ++ .. ++
T Consensus 72 ~~~~~i~~~l~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~~vp~y~~~i~~g~~~~~~~~~~~ 151 (410)
T 2gl5_A 72 LNIEKIWEFFFRKTFWGMGGGNVFYAGMSAIDIALWDIKGKYLGVPVYQLLGGKTNEKLRTYASQLQFGWGDKNHILVTP 151 (410)
T ss_dssp TCHHHHHHHHHHSSSGGGSCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTSCSCSSEEEEEECGGGCCTTCCSCCCSH
T ss_pred HHHHHHHHHHHHhcccccCCchHHHhHHHHHHHHHHHHhhhhcCCcHHHHcCCCccCceeEeEecccCCccccccccCCH
Confidence 999999999976432 11 13578999999999999999999999999996 568999987 65 34 89
Q ss_pred HHHHHHHHHHHHcCCCeEEEec------CC------------------ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCH
Q 015289 188 AEAAELASKYRKQGFTTLKLKV------GK------------------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKP 242 (409)
Q Consensus 188 ~~~~~~~~~~~~~Gf~~~KiKv------G~------------------~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~ 242 (409)
+++.+.+++++++||+++|+|+ |. +++.|++++++||++ ++++.|++|+|++|++
T Consensus 152 ~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~~~~~~~~~GG~~~~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~ 231 (410)
T 2gl5_A 152 EEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEARIAAMREAMGDDADIIVEIHSLLGT 231 (410)
T ss_dssp HHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCSCH
T ss_pred HHHHHHHHHHHHcCCCEEEEeccccCCcccccccccccccccCccchhHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCH
Confidence 9999999999999999999997 53 457899999999997 8999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-
Q 015289 243 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG- 321 (409)
Q Consensus 243 ~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G- 321 (409)
++|+++++.|+++++ .|||||++++|++++++|++ ++++||++||+++++++++++++.+++|++|+|++++|
T Consensus 232 ~~ai~~~~~l~~~~i--~~iE~P~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GG 305 (410)
T 2gl5_A 232 NSAIQFAKAIEKYRI--FLYEEPIHPLNSDNMQKVSR----STTIPIATGERSYTRWGYRELLEKQSIAVAQPDLCLCGG 305 (410)
T ss_dssp HHHHHHHHHHGGGCE--EEEECSSCSSCHHHHHHHHH----HCSSCEEECTTCCTTHHHHHHHHTTCCSEECCCTTTTTH
T ss_pred HHHHHHHHHHHhcCC--CeEECCCChhhHHHHHHHHh----hCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCC
Confidence 999999999999986 59999999999999999975 57899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceeccccc--cccccCCCCCCeeeeCcEEecCCCCCc
Q 015289 322 VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTP--LLLSEDPVLDGYEVSGAVYKFTNARGH 399 (409)
Q Consensus 322 i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~p--~~~~~d~~~~~~~~~~G~i~~p~~PGl 399 (409)
++++++++++|+++|+++++|++ +|+++.++++|++++++|+.++|+... ..+.+|++.++++++||++.+|++|||
T Consensus 306 it~~~~ia~~A~~~gi~~~~h~~-~s~i~~aa~~hlaaa~~~~~~~e~~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGl 384 (410)
T 2gl5_A 306 ITEGKKICDYANIYDTTVQVHVC-GGPVSTVAALHMETAIPNFIIHEHHTNAMKASIRELCTHDYQPENGYYVAPEQPGL 384 (410)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCC-SSHHHHHHHHHHHHHCTTBCCEEEETTTTCHHHHTTBSSCCCCBTTEECCCCSSBT
T ss_pred HHHHHHHHHHHHHcCCeEeecCC-CCHHHHHHHHHHHHhCCcceeeeeccccccchHHHhccCCceecCCEEECCCCCcC
Confidence 99999999999999999999999 699999999999999999988887421 113568888888999999999999999
Q ss_pred ccccCCCCcC
Q 015289 400 GGFLHWDNIA 409 (409)
Q Consensus 400 G~~~d~d~~~ 409 (409)
|+++|++.++
T Consensus 385 Gv~~d~~~l~ 394 (410)
T 2gl5_A 385 GQELNDEVVK 394 (410)
T ss_dssp SCCBCHHHHT
T ss_pred CcccCHHHHH
Confidence 9999998764
|
| >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-64 Score=509.60 Aligned_cols=346 Identities=18% Similarity=0.209 Sum_probs=298.8
Q ss_pred eeeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCC
Q 015289 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA 123 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~ 123 (409)
|+|||++|+++.+.+|..+|+ ..++|||+|++|++||||+.+..+.+.+ .+...++++.|.|+|+++
T Consensus 1 m~MkI~~i~~~~~~~~~~~~~----------~~v~V~v~td~G~~G~Ge~~~~~g~~~~---~~~~~i~~l~p~l~G~d~ 67 (403)
T 2ox4_A 1 MSLKITKIEIFHVHTRPQSGQ----------RPILVKVSTDEGIYGLGEAGIAYGVGGS---AAAGILKDYAALLIGEDP 67 (403)
T ss_dssp -CCCEEEEEEEEECCCTTTCC----------CCEEEEEEETTSCEEEEEESCSSSSCHH---HHHHHHHHHHHHHTTCCT
T ss_pred CCCeEEEEEEEEecCCCCCCc----------cceEEEEEeCCCCEEEEeecCCCCCchH---HHHHHHHHHHHHcCCCCH
Confidence 569999999999976532221 3589999999999999999332222233 334445668899999999
Q ss_pred CCHHHHHHHHHhhcC----CC-hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeee-ec--CC-------CH
Q 015289 124 MALGSVFGVVAGLLP----GH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDIT-IP--IV-------SP 187 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~----g~-~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~-i~--~~-------~~ 187 (409)
.+++.+|+.+.+... +. ..+.|++||||||||+.||..|+|||+||||. ++++|+|.+ ++ .. ++
T Consensus 68 ~~~~~i~~~l~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~~vp~y~~~i~~g~~~~~~~~~~~ 147 (403)
T 2ox4_A 68 FNTEAIWEKLFKKTFWGQGGGTVIFSGISAFDIAFWDIKGKALNLPVYKLLGGKNREDLRVYASQLQFGWGKERKSKGRK 147 (403)
T ss_dssp TCHHHHHHHHHHSSSGGGTCBHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSSSSEEEEEECGGGCSSSSCCCCCSH
T ss_pred HHHHHHHHHHHHhcccccCCcHHHHhHHHHHHHHHHHHhHhHcCCcHHHHcCCCCCCceeeeEeeccCCccccccccCCH
Confidence 999999999976432 11 13578999999999999999999999999996 568999987 65 34 89
Q ss_pred HHHHHHHHHHHHcCCCeEEEec------CC-------------ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHH
Q 015289 188 AEAAELASKYRKQGFTTLKLKV------GK-------------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVE 247 (409)
Q Consensus 188 ~~~~~~~~~~~~~Gf~~~KiKv------G~-------------~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~ 247 (409)
+++.+.+++++++||+++|+|+ |. +++.|++++++||++ ++++.|++|+|++|+.++|++
T Consensus 148 e~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s~~~g~~~~~~~~~~~e~v~avr~avG~d~~l~vDan~~~~~~~ai~ 227 (403)
T 2ox4_A 148 EEYAEEALKAVAEGYDAVKVDVLAHDRNGSREGVFLEGPLPSETIKIGVERVEAIRNAVGPDVDIIVENHGHTDLVSAIQ 227 (403)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSSSCTTSCCTTCCCSSSCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeccccCCccccccCcccCCCchHHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHH
Confidence 9999999999999999999997 53 467899999999997 899999999999999999999
Q ss_pred HHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHH
Q 015289 248 VLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGAL 326 (409)
Q Consensus 248 ~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~ 326 (409)
+++.|+++++ .|||||++++|++++++|++ ++++||++||+++++++++++++.+++|++|+|++++| +++++
T Consensus 228 ~~~~l~~~~i--~~iE~P~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGite~~ 301 (403)
T 2ox4_A 228 FAKAIEEFNI--FFYEEINTPLNPRLLKEAKK----KIDIPLASGERIYSRWGFLPFLEDRSIDVIQPDLGTCGGFTEFK 301 (403)
T ss_dssp HHHHHGGGCE--EEEECCSCTTSTHHHHHHHH----TCCSCEEECTTCCHHHHHHHHHHTTCCSEECCCHHHHTHHHHHH
T ss_pred HHHHHHhhCC--CEEeCCCChhhHHHHHHHHH----hCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHHHHH
Confidence 9999999986 59999999999999999975 67899999999999999999999999999999999998 99999
Q ss_pred HHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceeccccc--cccccCCCCCCeeeeCcEEecCCCCCcccccC
Q 015289 327 EIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTP--LLLSEDPVLDGYEVSGAVYKFTNARGHGGFLH 404 (409)
Q Consensus 327 ~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~p--~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d 404 (409)
+++++|+++|+++++|++. |++++++++||+++++|+.++|+... ..+.+|++.++++++||++.+|++||||+++|
T Consensus 302 ~i~~~A~~~g~~~~~h~~~-s~i~~aa~~hlaaa~~~~~~~e~~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d 380 (403)
T 2ox4_A 302 KIADMAHIFEVTVQAHVAG-TGVAEAASLHAEIAIPNFCIHEHHQKTLLPEYEELCVHNYQPVKGRYKVPELPGIGQDIT 380 (403)
T ss_dssp HHHHHHHHTTCEECCCCCS-CHHHHHHHHHHHHTCSSBCCEEEEGGGGSHHHHTTBSCCCCCBTTEECCCCSSBTSCCBC
T ss_pred HHHHHHHHcCCEEeecCCC-CHHHHHHHHHHHHhCCCcceeeeccccccchHHHhccCCceecCCEEECCCCCCCCcccC
Confidence 9999999999999999995 99999999999999999988886421 11356888888899999999999999999999
Q ss_pred CCCcC
Q 015289 405 WDNIA 409 (409)
Q Consensus 405 ~d~~~ 409 (409)
++.++
T Consensus 381 ~~~l~ 385 (403)
T 2ox4_A 381 EKLYQ 385 (403)
T ss_dssp GGGGT
T ss_pred HHHHH
Confidence 99874
|
| >2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure initiative; 1.60A {Desulfotalea psychrophila LSV54} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-65 Score=509.80 Aligned_cols=343 Identities=19% Similarity=0.254 Sum_probs=297.0
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCC--
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA-- 123 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~-- 123 (409)
||| +++++++++|++.||+++.++++.++.++|+| |++|++||||+.+.+++++|+...+...++.++|.++|+++
T Consensus 3 ~~m-~i~~~~~~~pl~~p~~~s~~~~~~~~~v~V~v-td~G~~G~GE~~~~~~~~~e~~~~~~~~l~~~~~~l~g~d~~~ 80 (377)
T 2pge_A 3 SGM-ELSYRRSDLIFKRPAGTSRGVLTSKPTWFVRL-DIDGHGGQGEVSLIPGLSLDPEEQIGRELDLLARRLRAEEPIR 80 (377)
T ss_dssp CCC-EEEEEECCEEBCC-------CCCEECEEEEEE-EETTEEEEEEEECCTTTCSSCHHHHHHHHHHHHHHHHHSCCHH
T ss_pred cce-EEEEEEEeecccCcceeccEEEeecceEEEEE-EcCCCEEEEEeccCCCCCcCCHHHHHHHHHHHHHHHhCCCccc
Confidence 466 88999999999999999999999999999999 89999999999988888888887777777778999999987
Q ss_pred ----------CCHHHHHHHHHhh------c---CCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecC
Q 015289 124 ----------MALGSVFGVVAGL------L---PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI 184 (409)
Q Consensus 124 ----------~~~~~~~~~~~~~------~---~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~ 184 (409)
.+++.+++.+.+. + .+...+.+++|||+||||+.||..|+|+|+||||.++++|+|.+++.
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~aid~Al~Dl~ak~~g~Pl~~llGg~~~~vp~~~~i~~ 160 (377)
T 2pge_A 81 LRQFLAERGGADFSDYRSVLTDIAGILDSWQVSTDGRFPALRFALEMALLDLLSGGRQEWFASDFTRGEKRIPVNGLIWM 160 (377)
T ss_dssp HHHHHHHTSSCTTSCHHHHHHHHHHHHHHTTSSTTSSCHHHHHHHHHHHHHHHHTSSSCSSCSTTTTTSCCEEBCEEECC
T ss_pred hhhhhhccccccHHHHHHhhhhhhhhhhhcccccccccHHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCeEEEeEEecC
Confidence 3445666554321 1 11123578999999999999999999999999998889999999988
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCC-ChhHHHHHHHHHHhh-C-CCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCce
Q 015289 185 VSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAV-H-PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~-~~~~d~~~l~avr~~-~-~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~ 261 (409)
.+++++.+++++++++||+++|+|+|. ++++|+++++++|+. + +++.|++|+|++|+.++|+++++.|+++++ .|
T Consensus 161 ~~~e~~~~~a~~~~~~G~~~~K~Kvg~~~~~~d~~~v~avr~~~g~~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i--~~ 238 (377)
T 2pge_A 161 GEAAFMQEQIEAKLAEGYGCLKLKIGAIDFDKECALLAGIRESFSPQQLEIRVDANGAFSPANAPQRLKRLSQFHL--HS 238 (377)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEEC---CHHHHHHHHHHHHHHSCTTTCEEEEECTTBBCTTTHHHHHHHHHTTCC--SE
T ss_pred CCHHHHHHHHHHHHHHhhhhheeecCCCChHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC--cE
Confidence 899999999999999999999999994 889999999999997 7 899999999999999999999999999987 49
Q ss_pred eecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHH--HHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCc
Q 015289 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD--VKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLN 338 (409)
Q Consensus 262 iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~--~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~ 338 (409)
||||++++|++++++|++ ++++||++||++.+..+ ++++++.+++|++|+|++++| ++++++++++|+++|++
T Consensus 239 iEqP~~~~d~~~~~~l~~----~~~ipIa~dE~~~~~~~~~~~~~i~~~a~d~i~ik~~~~GGit~~~~i~~~A~~~g~~ 314 (377)
T 2pge_A 239 IEQPIRQHQWSEMAALCA----NSPLAIALDEELIGLGAEQRSAMLDAIRPQYIILKPSLLGGFHYAGQWIELARERGIG 314 (377)
T ss_dssp EECCBCSSCHHHHHHHHH----HCSSCEEESGGGTTCCTHHHHHHHHHHCCSEEEECHHHHTSHHHHHHHHHHHHHTTCE
T ss_pred EEccCCcccHHHHHHHHh----hCCCcEEECCccCCcchHHHHHHHHhCCCCEEEECchhcCCHHHHHHHHHHHHHCCCe
Confidence 999999999999999975 57899999999999988 889999999999999999998 99999999999999999
Q ss_pred EEEccCCchHHHHHHHHHHHccCCCCceeccccccccccCCCCCCeeeeCcEEecCCCC
Q 015289 339 LMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNAR 397 (409)
Q Consensus 339 ~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~P 397 (409)
+++||++||++++++++|++++++++.+++++++.++.+|++ ++++++||++.+|++-
T Consensus 315 ~~~~~~~es~i~~~a~~hlaa~~~~~~~~~l~~~~~~~~d~~-~~~~~~~G~~~~~~~~ 372 (377)
T 2pge_A 315 FWITSALESNLGLAAIAQWTALYQPTMPQGLGTGQLYTNNLP-SNLAVDGGLLGVSEGH 372 (377)
T ss_dssp EEEBCCSCCHHHHHHHHHHHHTTCCSSCBBCSCCCCBSSCCC-CCCEECSSEEEC----
T ss_pred EEecCCcccHHHHHHHHHHHHCCCCCccccCCchhhhHhhcc-CCceeeCCEEecCCcc
Confidence 999999999999999999999999988889888766677876 6789999999999863
|
| >4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI, structural genomics, lyase; 1.70A {Actinobacillus succinogenes} PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 3pwi_A* 1jct_A* 3pwg_A* 1bqg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-64 Score=515.68 Aligned_cols=351 Identities=17% Similarity=0.202 Sum_probs=286.4
Q ss_pred eeEeEEEEEEEEecCccceeeccceee-eeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLD-QVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAM 124 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~-~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~ 124 (409)
.+|++++++++... ..|+....|... .....||+|+||+|++||||++. ++.... .++.+.|.|+|+++.
T Consensus 26 p~i~~~~v~pva~~-d~~l~~~~g~h~p~f~RtiV~v~Td~Gi~G~GE~~g-----~~~~~~---~le~~~p~liG~dp~ 96 (464)
T 4g8t_A 26 PIITEMQVIPVAGH-DSMLLNLSGAHSPYFTRNIVILKDNSGNTGVGEVPG-----GEKIRQ---TLEDAKPLVIGKTLG 96 (464)
T ss_dssp CBEEEEEEEEEEEE-CCCBEETTEECCSEEEEEEEEEEETTSCEEEEEEEC-----CHHHHH---HHHHHGGGTTTCBGG
T ss_pred CEEeEEEEEEecCC-CcccccCCcccCCccceEEEEEEECCCCEEEEeCCC-----cHHHHH---HHHHHHHHHcCCCHH
Confidence 48999999998753 233444444221 12235899999999999999853 233322 345688999999999
Q ss_pred CHHHHHHHHHhhcCCC-------------hhhHHHHHHHHHHHHHHHhhcCCchHHHhC-CC-CCeeeeeeeecC-----
Q 015289 125 ALGSVFGVVAGLLPGH-------------QFASVRAAVEMALIDAVAKSVSMPLWRLFG-GV-SNTITTDITIPI----- 184 (409)
Q Consensus 125 ~~~~~~~~~~~~~~g~-------------~~~~a~said~AlwDl~gk~~g~Pl~~LLG-g~-~~~i~~~~~i~~----- 184 (409)
+++.+|+.+++.+.++ ....|+||||+|||||+||.+|+|||+||| |+ +++|++|.+...
T Consensus 97 ~ie~i~~~l~~~~~~~~~~g~g~~~~~~~~~~~A~sAID~ALWDl~gK~~g~Pv~~LLGgG~~Rd~V~~y~~~~~~~d~~ 176 (464)
T 4g8t_A 97 EYKNVMNTVRQTFNDHDAGGRGLQTFDLRTTIHVVTAIEAAMLDLLGQFLGVTVASLLGDGQQRDAVEMLGYLFFIGDRK 176 (464)
T ss_dssp GHHHHHHHHHHHTTTSCTTTTCSSSSCCCSHHHHHHHHHHHHHHHHHHHHTSBTGGGSTTSCCCSEEEBCEEECCBCCGG
T ss_pred HHHHHHHHHHHHhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCceEEEEEEeeccCccc
Confidence 9999999998643211 134689999999999999999999999999 55 568999876532
Q ss_pred ------------------------CCHHHHHHHHHH-HHHcCCCeEEEecC-CChhHHHHHHHHHHhhCCCcEEEEeCCC
Q 015289 185 ------------------------VSPAEAAELASK-YRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANE 238 (409)
Q Consensus 185 ------------------------~~~~~~~~~~~~-~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~~~~~~l~vDaN~ 238 (409)
.+++++++++++ +.++||++||+|+| .+.++|+++++++|+++||+.||+|+|+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KlKvG~~~~~~di~~v~avrea~pd~~L~vDaN~ 256 (464)
T 4g8t_A 177 KTTLAYQNQENDPCDWYRVRHEEAMTPESVVRLAEAAYEKYGFNDFKLKGGVLDGFEEAEAVTALAKRFPDARITLDPNG 256 (464)
T ss_dssp GSCSCCCCCTTCSSHHHHHTTSCBCSHHHHHHHHHHHHHHHCCSCEEEECSSSCHHHHHHHHHHHHHHSTTCCEEEECTT
T ss_pred ccchhhhcccccccchhhhcccccCCHHHHHHHHHHHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHhhCCCceEEEECCC
Confidence 245666665544 45569999999999 5889999999999999889999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 015289 239 GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (409)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~ 318 (409)
+|++++|+++++.|+++ + .|||||++++|+.++.++.+.+++++++|||+||++++..+++++++.+++|++|+|+
T Consensus 257 ~wt~~~Ai~~~~~le~~-l--~wiEeP~~~~d~~~~~e~~a~lr~~~~iPIa~gE~~~~~~~~~~~i~~~avdi~~~d~- 332 (464)
T 4g8t_A 257 AWSLDEAVKIGKQLKGV-L--AYAEDPCGAEQGYSGREIMAEFRRATGLPTATNMIATDWRQMGHTISLQSVDIPLADP- 332 (464)
T ss_dssp CBCHHHHHHHHHHTTTT-C--SCEESCBCCBTTBCHHHHHHHHHHHHCCCEEESSSSCSHHHHHHHHHHTCCSEEBCCH-
T ss_pred ccCHHHHHHHHHHhhhc-c--ceeecCcCcccccchHHHHHhhhccCCCCccccccccchhhHHHHHHhhCCCEEeccc-
Confidence 99999999999999987 5 4999999999865544433334457899999999999999999999999999999995
Q ss_pred CCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCce-ecccccc-ccccCCCCCCeeeeCcEEecCC
Q 015289 319 KVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPL-LLSEDPVLDGYEVSGAVYKFTN 395 (409)
Q Consensus 319 ~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~-~e~~~p~-~~~~d~~~~~~~~~~G~i~~p~ 395 (409)
++| ++++++++++|+++|+++++|++.++++++++++|+++++||..+ .+...++ .+.+++++++++++||++.+|+
T Consensus 333 ~~GGit~~~kia~lA~~~gi~v~~h~~~~~~I~laA~~hlaaa~pn~~~~~~~~~~~~~~~~~l~~~p~~i~dG~i~vP~ 412 (464)
T 4g8t_A 333 HFWTMQGSIRVAQMCHEWGLTWGSHSNNHFDISLAMFTHVAAAAPGDITAIDTHWIWQEGNQRLTKEPFQIKGGLVEVPK 412 (464)
T ss_dssp HHHCHHHHHHHHHHHHHHTCCCBCCCCSCCHHHHHHHHHHHTTCCSCCCCBCCCHHHHTTSCCSBSSCCCEETTEEECCS
T ss_pred cccchHHHHHHHHHHHHcCCEEEEcCCcccHHHHHHHHHHHHhCCCCCccccccccccchhHhhcCCCCeeECCEEECCC
Confidence 776 999999999999999999999999999999999999999998644 3333222 2356788889999999999999
Q ss_pred CCCcccccCCCCcC
Q 015289 396 ARGHGGFLHWDNIA 409 (409)
Q Consensus 396 ~PGlG~~~d~d~~~ 409 (409)
+||||+|+|+|.|+
T Consensus 413 ~PGLGvelD~d~l~ 426 (464)
T 4g8t_A 413 KPGLGVELDMDQVM 426 (464)
T ss_dssp SSBTCCCBCHHHHH
T ss_pred CCCCceEECHHHHH
Confidence 99999999999763
|
| >2okt_A OSB synthetase, O-succinylbenzoic acid synthetase; enolase, structural genom protein structure initiative, PSI, nysgrc; 1.30A {Staphylococcus aureus subsp} PDB: 2ola_A 3h70_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-64 Score=498.76 Aligned_cols=324 Identities=17% Similarity=0.174 Sum_probs=289.5
Q ss_pred eeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCc--cCcccHHHHHHHHHHHHHHHcCCC
Q 015289 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPH--VTAEDQQTAMVKASEACEVLKESP 122 (409)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~--~~~e~~~~~~~~~~~~~~~l~g~~ 122 (409)
+|||++|+++++++|++.||+++.++++.++.++|||+||+|++||||+.+.+. |++|+.+.+...+++.+|.++|++
T Consensus 1 ~MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~e~~~~~~~~l~~~~~~l~G~d 80 (342)
T 2okt_A 1 SLKLTALHFYKYSEPFKSQIVTPKVTLTHRDCLFIELIDDKGNAYFGECNAFQTDWYDHETIASVKHVIEQWFEDNRNKS 80 (342)
T ss_dssp CBCEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTCCEEEEECCCBSSTTSCSCBHHHHHHHHHHHHHHHTTCC
T ss_pred CcEEEEEEEEEEeecccCCeecccEEEEeeeEEEEEEEECCCCEEEEEecCCCCCcCCCCCHHHHHHHHHHHHHHHcCCC
Confidence 499999999999999999999999999999999999999999999999987653 777877766666776669999999
Q ss_pred CCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeee-cCCCHHHHHHHHHHHHHcC
Q 015289 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITI-PIVSPAEAAELASKYRKQG 201 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i-~~~~~~~~~~~~~~~~~~G 201 (409)
+.+++.+|+.+... +| ...+++|||+||||++||..|+ ++|+|.++ +..+ +++ ++++++|
T Consensus 81 ~~~~~~l~~~l~~~-~g--~~~a~said~ALwDl~gk~~g~-----------~v~~~~~~~g~~~-e~~----~~~~~~G 141 (342)
T 2okt_A 81 FETYEAALKLVDSL-EN--TPAARATIVMALYQMFHVLPSF-----------SVAYGATASGLSN-KQL----ESLKATK 141 (342)
T ss_dssp BCSHHHHHHTTGGG-TT--CHHHHHHHHHHHHHTTCCCCCE-----------EEECEEEESSCCH-HHH----HHHHHHC
T ss_pred cCCHHHHHHHHHHh-hc--ChHHHHHHHHHHHHHhhhhhCc-----------eEeeeEEEecCCH-HHH----HHHHHcC
Confidence 99999999888654 44 3568999999999999999998 78999888 6644 444 6677899
Q ss_pred CCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHh
Q 015289 202 FTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA 281 (409)
Q Consensus 202 f~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~ 281 (409)
|+++|+|+| ++ |++++++||++.|++.|++|+|++|++++| +++++|+++++ .|||||++++|++++++ .
T Consensus 142 ~~~~KiKvg--~~-d~~~v~avr~~~~~~~l~vDaN~~~~~~~A-~~~~~l~~~~i--~~iEqP~~~~d~~~~~~-~--- 211 (342)
T 2okt_A 142 PTRIKLKWT--PQ-IMHQIRVLRELDFHFQLVIDANESLDRQDF-TQLQLLAREQV--LYIEEPFKDISMLDEVA-D--- 211 (342)
T ss_dssp CSEEEEECC--TT-HHHHHHHHTTSSSCCEEEEECTTCCCGGGH-HHHHHHGGGCE--EEEECCCSSGGGGGGSC-T---
T ss_pred CcEEEEEeC--HH-HHHHHHHHHHhCCCCeEEEECCCCCCHHHH-HHHHHHhhCCC--cEEECCCCCccHHHHHH-h---
Confidence 999999999 68 999999999977999999999999999999 99999999986 59999999999988876 2
Q ss_pred hccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHcc
Q 015289 282 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG 360 (409)
Q Consensus 282 ~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa 360 (409)
++++|||+||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||+++.++++|++++
T Consensus 212 --~~~ipIa~dEs~~~~~~~~~~i~~~a~d~i~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~hlaa~ 289 (342)
T 2okt_A 212 --GTIPPIALDEKATSLLDIINLIELYNVKVVVLKPFRLGGIDKVQTAIDTLKSHGAKVVIGGMYEYGLSRYFTAMLARK 289 (342)
T ss_dssp --TSSCCEEESTTCCCHHHHHHHHHHSCCCEEEECHHHHTSGGGHHHHHHHHHHTTCEEEEBCSSCCHHHHHHHHHHHTT
T ss_pred --cCCCCEEecCCCCCHHHHHHHHHhCCCCEEEEChhhcCCHHHHHHHHHHHHHCCCEEEEcCCcccHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999997 999999999999999999999999999999999999998
Q ss_pred C--CCCceecc-ccccccccCCCCCCeeeeCcEEecCCCCCcccccC
Q 015289 361 L--GCFKFIDL-DTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLH 404 (409)
Q Consensus 361 ~--~~~~~~e~-~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d 404 (409)
+ ++ ++ +++..+.+|++.++++++||++.+ +.||+|+++-
T Consensus 290 ~~~~~----~l~~~~~~~~~d~~~~~~~~~~G~~~~-~~PGlg~~~~ 331 (342)
T 2okt_A 290 GDYPG----DVTPAGYYFEQDVVAHSGILKEGRLEF-RPPLVDITQL 331 (342)
T ss_dssp SSSCC----BCCCTTSSCSSCSSTTTTEEETTEEEE-CCCCCCGGGC
T ss_pred ccccc----ccCCchhhhhccccCCCceEECCEEEe-CcccCCHHHc
Confidence 7 43 23 555556788888889999999999 8899999874
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-64 Score=506.23 Aligned_cols=343 Identities=22% Similarity=0.275 Sum_probs=292.7
Q ss_pred eeeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHcCCC
Q 015289 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESP 122 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (409)
|+|||++++++++++|++.||+++.++++.++.++|+|+|++|++||||+.+.. .+..+.+.+...+++ +.|.++|++
T Consensus 1 m~mkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~v~V~v~td~G~~G~GE~~~~g-~~~~~~~~~~~~i~~~l~p~l~G~d 79 (389)
T 2oz8_A 1 MSLSLSHFRITRFQFARDRVIGDSQVRADDVNVAALELVSESGEVGLGFIQTLF-NPLPDQQEIESVFEHEVWPSLKGNR 79 (389)
T ss_dssp --CCEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEEEESS-SCCCCHHHHHHHHHHHTHHHHTTSC
T ss_pred CCCEEEEEEEEEEEeccCCceecccceecccceEEEEEEECCCCEEEEEeccCC-CccccHHHHHHHHHHHHHHHHcCCC
Confidence 569999999999999999999999999999999999999999999999998621 110012233444554 689999988
Q ss_pred CCCHHHHHHHHHhhcCCC---hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCC--CHHHHHHHHHHH
Q 015289 123 AMALGSVFGVVAGLLPGH---QFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIV--SPAEAAELASKY 197 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~g~---~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~--~~~~~~~~~~~~ 197 (409)
+.++ +..+.....+. ..+.+++||||||||+.||..|+|+|+||||.++++|+|.+++.. +++++.+.++++
T Consensus 80 ~~~~---~~~~~~~~~~~~~~l~~~a~~aid~AlwDl~~k~~g~Pl~~lLGg~~~~vp~y~~~~~~~~~~~~~~~~a~~~ 156 (389)
T 2oz8_A 80 AIAL---VHRVNRPRGGNQRAYSLPFHEAVQVALWDLAAKEAGLPLHVLLGSRRNRVKAYASGLDFHLDDDAFVSLFSHA 156 (389)
T ss_dssp HHHH---TTCCCCCC------CCSCCHHHHHHHHHHHHHHHHTSBHHHHTTCSCSEEEEEEECCBTTCCHHHHHHHHHHH
T ss_pred HHHH---HHHHhccCCCccchhhHHHHHHHHHHHHHHHHHHhCCcHHHHcCCCCCceEEEEeCCCcCCCHHHHHHHHHHH
Confidence 7554 11110001121 024589999999999999999999999999988899999887653 899999999999
Q ss_pred HHcCCCeEEEecCC-ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHh--CCCCCceeecCCCCCCHHH
Q 015289 198 RKQGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE--MGVTPVLFEQPVHRDDWEG 273 (409)
Q Consensus 198 ~~~Gf~~~KiKvG~-~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~--~~l~~~~iEeP~~~~d~~~ 273 (409)
+++||+++|+|+|. +++.|++++++||++ ++++.|++|+|++|+.++|+++++.|++ +++ .|||||++++|+++
T Consensus 157 ~~~Gf~~vKik~g~~~~~~~~e~v~avR~a~G~~~~l~vDan~~~~~~~a~~~~~~l~~~g~~i--~~iEqP~~~~~~~~ 234 (389)
T 2oz8_A 157 ASIGYSAFKIKVGHRDFDRDLRRLELLKTCVPAGSKVMIDPNEAWTSKEALTKLVAIREAGHDL--LWVEDPILRHDHDG 234 (389)
T ss_dssp HHTTCCEEEEECCCSSHHHHHHHHHHHHTTSCTTCEEEEECTTCBCHHHHHHHHHHHHHTTCCC--SEEESCBCTTCHHH
T ss_pred HHhCCCEEEEccCCCCHHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCc--eEEeCCCCCcCHHH
Confidence 99999999999996 899999999999997 7999999999999999999999999999 876 59999999999999
Q ss_pred HHHhHHHhhccC-CCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEEEc-cCCchHHHH
Q 015289 274 LGHVSHIAKDKF-GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIG-GMVETRLAM 351 (409)
Q Consensus 274 ~~~l~~~~~~~~-~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~~~-~~~es~i~~ 351 (409)
+++|++ ++ ++||++||++ ++++++++++.+++|++|+| -|++++++++++|+++|+++++| ||.+
T Consensus 235 ~~~l~~----~~~~iPIa~dE~~-~~~~~~~~i~~~~~d~v~ik---GGit~a~~i~~~A~~~gi~~~~~~~~~e----- 301 (389)
T 2oz8_A 235 LRTLRH----AVTWTQINSGEYL-DLQGKRLLLEAHAADILNVH---GQVTDVMRIGWLAAELGIPISIGNTFLE----- 301 (389)
T ss_dssp HHHHHH----HCCSSEEEECTTC-CHHHHHHHHHTTCCSEEEEC---SCHHHHHHHHHHHHHHTCCEEECCCGGG-----
T ss_pred HHHHHh----hCCCCCEEeCCCC-CHHHHHHHHHcCCCCEEEEC---cCHHHHHHHHHHHHHcCCeEeecccHHH-----
Confidence 999975 57 8999999999 99999999999999999999 23999999999999999999999 7755
Q ss_pred HHHHHHHccCCCCceeccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 352 GFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 352 ~~~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
+++|++++++++.++|++ ++ +.++++.+++.++||++.+|++||||+++|++.|
T Consensus 302 -a~lhlaaa~~~~~~~e~~-~~-~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 355 (389)
T 2oz8_A 302 -AGVHMAVALPEVEWLEYS-FQ-NFDHLVEQPIEIRDGYAYAPDRPGHGLVLSEKAR 355 (389)
T ss_dssp -TTHHHHHHSTTEEEEEEC-CC-SCGGGBSSCCCEETTEEECCSSSBTSCCBCHHHH
T ss_pred -HHHHHHhcCCCCceeecc-hH-HHhhhccCCceEECCEEECCCCCcCCCccCHHHH
Confidence 788999999998888875 32 3567777888999999999999999999999865
|
| >3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-65 Score=511.86 Aligned_cols=335 Identities=21% Similarity=0.228 Sum_probs=297.1
Q ss_pred eeeeEeEEEEEEEEecCccceeecc-ceeee--eeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcC
Q 015289 44 FTVDVQRAENRPLNVPLIAPFTIAT-SRLDQ--VENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKE 120 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p~~~a~-~~~~~--~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g 120 (409)
+.|||++|+++.+++|++.||+++. +.++. ++.++|||+|+ |.+||||+. . .++.++|.|+|
T Consensus 10 ~~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~~~~V~v~td-G~~G~GE~~--g------------~i~~l~p~l~G 74 (392)
T 3p3b_A 10 SDWKVEKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITID-GQTGYGSSI--H------------MTPEWAEDVIG 74 (392)
T ss_dssp TTCBEEEEEEEEEEEEEEEEECBCSSSCCCEEEEEEEEEEEEET-TEEEEEECC--S------------CCHHHHHTTTT
T ss_pred CCCeEEEEEEEEEeccCCCcccccccccccCCCCcEEEEEEEEC-CCEEEEecc--c------------HHHHHHHHhcC
Confidence 3599999999999999999999995 55666 88999999999 999999986 1 12347899999
Q ss_pred CCCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCC----C--CCeeeeeee---ecCCCH----
Q 015289 121 SPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG----V--SNTITTDIT---IPIVSP---- 187 (409)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg----~--~~~i~~~~~---i~~~~~---- 187 (409)
+++.+++.+| .+ ..+.+++|||+||||+.||..|+|+|+|||| . ++++|+|.+ ++..++
T Consensus 75 ~d~~~~~~~~-------~~-~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~~~~~~~vp~~~s~~~~~~~~~~~~~ 146 (392)
T 3p3b_A 75 RRLLDLFDDR-------GR-LREAYRLQLEYPVLDWLGQRQGKPVYDLVSGAHLETGASLVVPCYDTSLYFDDLHLADER 146 (392)
T ss_dssp CBGGGGBCTT-------SC-BCGGGHHHHHHHHHHHHHHHHTCBHHHHHC--------CEEEEEEEEEECBTTTTCCSHH
T ss_pred CCHHHHHHHH-------hH-HHHHHHHHHHHHHHHHHHHHcCCcHHHHhcCccccccccCCcceeEeecccCCCCccccc
Confidence 9988877665 22 1246899999999999999999999999999 6 568999954 555678
Q ss_pred ---HHHHHHHHHHHHcCCCeEEEecCC---------ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHh
Q 015289 188 ---AEAAELASKYRKQGFTTLKLKVGK---------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE 254 (409)
Q Consensus 188 ---~~~~~~~~~~~~~Gf~~~KiKvG~---------~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~ 254 (409)
+++.+.+++++++||+++|+|+|. +++.|+++++++|++ ++++.|++|+|++|+.++|+++++.|++
T Consensus 147 ~~~e~~~~~a~~~~~~Gf~~vKik~g~~~~~~~~~~~~~~~~e~v~avR~~~g~d~~l~vDan~~~~~~~ai~~~~~l~~ 226 (392)
T 3p3b_A 147 AAVALMQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSD 226 (392)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEECCHHHHTSCHHHHHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHTTT
T ss_pred chHHHHHHHHHHHHHhCCCEEEECcCcCcccCCccccHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 889999999999999999999995 678999999999996 8999999999999999999999999999
Q ss_pred CCCCCceeecCCCCCCHHHHHHhHHHhhc-cCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHH
Q 015289 255 MGVTPVLFEQPVHRDDWEGLGHVSHIAKD-KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVR 333 (409)
Q Consensus 255 ~~l~~~~iEeP~~~~d~~~~~~l~~~~~~-~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~ 333 (409)
+++ .|||||++ +|++++++|++.+++ .+++||++|| ++++++++++++.+++|++|+|++++|++++++++++|+
T Consensus 227 ~~i--~~iE~P~~-~d~~~~~~l~~~l~~~g~~iPIa~dE-~~~~~~~~~~i~~~~~d~v~ik~~~~Git~~~~i~~~A~ 302 (392)
T 3p3b_A 227 VNL--YWLEEAFH-EDEALYEDLKEWLGQRGQNVLIADGE-GLASPHLIEWATRGRVDVLQYDIIWPGFTHWMELGEKLD 302 (392)
T ss_dssp SCE--EEEECSSS-CCHHHHHHHHHHHHHHTCCCEEEECC-SSCCTTHHHHHHTTSCCEECCBTTTBCHHHHHHHHHHHH
T ss_pred cCC--CEEecCCc-ccHHHHHHHHHhhccCCCCccEEecC-CCCHHHHHHHHHcCCCCEEEeCccccCHHHHHHHHHHHH
Confidence 986 59999999 999999999752100 1789999999 999999999999999999999999999999999999999
Q ss_pred HcCCcEEEccCCchHHHHHHHHHHHccCCCCceeccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 334 ASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 334 ~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
++|+++++| +.||++++++++|++++++|+.++|++++ +.+|++.+++.++||++.+|++||||+++|++.+
T Consensus 303 ~~gi~~~~h-~~es~i~~~a~l~laa~~~~~~~~e~~~~--~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 374 (392)
T 3p3b_A 303 AHGLRSAPH-CYGNAYGIYASGHLSAAVRNFEFVEYDDI--TIEGMDVSGYRIENGEIHVPATPGFGIVFDDELV 374 (392)
T ss_dssp HTTCEECCB-CCSCTHHHHHHHHHGGGCTTBCCEEECCE--EETTEECTTCEEETTEEEECCSSBTSCEECHHHH
T ss_pred HcCCEEEec-CCCCHHHHHHHHHHHHhCCCCceeeccch--hhHhhccCCCcccCCEEECCCCCccceeECHHHH
Confidence 999999999 88999999999999999999999998877 4678888889999999999999999999999865
|
| >2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-63 Score=504.51 Aligned_cols=338 Identities=17% Similarity=0.245 Sum_probs=294.3
Q ss_pred eeeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCC
Q 015289 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA 123 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~ 123 (409)
++|||++|+++.+. |. . ..++|+|+|++| +||||+ +. + .+...+...++++.|.|+|+++
T Consensus 4 ~~MkI~~i~~~~~~-~~-~------------~~v~V~v~td~G-~G~Ge~-~~-g---~~~~~~~~~i~~l~p~liG~d~ 63 (410)
T 2qq6_A 4 SAPRITRVETAAIR-AV-G------------PSVLVRVWAGDE-HGLGEC-YP-S---APAAGIHHIVMNMEEQLLGEDP 63 (410)
T ss_dssp CCCCCCEEEEEEEC-CC--------------CEEEEEEEETTE-EEEEEE-CC-C---SCHHHHHHHHHTTHHHHTTCCT
T ss_pred CCceEeEEEEEEEC-CC-C------------CEEEEEEEECCc-EEEEEe-cC-C---CChHHHHHHHHHHHHHhCCCCc
Confidence 55999999999986 43 1 148999999999 999999 42 2 2334444455668899999999
Q ss_pred CCHHHHHHHHHhhcC-----CChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecC--C----------
Q 015289 124 MALGSVFGVVAGLLP-----GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPI--V---------- 185 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~-----g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~--~---------- 185 (409)
.+++.+|+.+.+... +.....|++||||||||+.||.+|+|||+||||. ++++|+|.++++ .
T Consensus 64 ~~~~~i~~~l~~~~~~~~~~~~~~~~A~~aid~AlwDl~gk~~g~Pl~~lLGg~~~~~vp~y~~~~~g~~~h~~~~~~~~ 143 (410)
T 2qq6_A 64 RDVERLYEKMRRWNIFTGGQAGAVITALSGIETALWDLAGKLQGVPVYRLLGGAFRRRVRLYADCNAGTVDAAAHHIEGG 143 (410)
T ss_dssp TCHHHHHHHHHHHTTTTTSSSSHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCSCSEEEEEEECCCSEECTTCCEEECC
T ss_pred cHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHhHhHcCCcHHHHcCCCccCceeEEEecccccccccccccccc
Confidence 999999999876432 1223579999999999999999999999999996 568999987642 3
Q ss_pred -----CHHHHHHHHHHHHHcCCCeEEEec----CC-------------ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCH
Q 015289 186 -----SPAEAAELASKYRKQGFTTLKLKV----GK-------------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKP 242 (409)
Q Consensus 186 -----~~~~~~~~~~~~~~~Gf~~~KiKv----G~-------------~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~ 242 (409)
+++++.+.+++++++||+++|+|+ |. +++.|++++++||++ ++++.|++|+|++|+.
T Consensus 144 ~~~~~~~~~~~~~a~~~~~~Gf~~vKik~~~~~G~~~~~~~G~~~~~~~~~~~~e~v~avRea~G~d~~l~vDan~~~~~ 223 (410)
T 2qq6_A 144 LFEEGSNEEYIAVAREAVERGFDAIKLDVDDITGPLHRDFWNGAISPREHEAMVARVAAVREAVGPEVEVAIDMHGRFDI 223 (410)
T ss_dssp TTCSTHHHHHHHHHHHHHHTTCSEEEEECCCSSSTTCSCSSSCCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCCCH
T ss_pred ccccCCHHHHHHHHHHHHHcCCCEEEeeccccCCcccCCcCccccchhhHHHHHHHHHHHHHhcCCCCEEEEECCCCCCH
Confidence 788899999999999999999999 64 567899999999997 8999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-
Q 015289 243 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG- 321 (409)
Q Consensus 243 ~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G- 321 (409)
++|+++++.|+++++ .|||||++++|++++++|++ ++++||++||+++++++++++++.+++|++|+|++++|
T Consensus 224 ~~a~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GG 297 (410)
T 2qq6_A 224 PSSIRFARAMEPFGL--LWLEEPTPPENLDALAEVRR----STSTPICAGENVYTRFDFRELFAKRAVDYVMPDVAKCGG 297 (410)
T ss_dssp HHHHHHHHHHGGGCC--SEEECCSCTTCHHHHHHHHT----TCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBHHHHTH
T ss_pred HHHHHHHHHHhhcCC--CeEECCCChhhHHHHHHHHh----hCCCCEEeCCCcCCHHHHHHHHHcCCCCEEecCccccCC
Confidence 999999999999987 49999999999999999874 67899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceeccccc-cccccCCCC--CCeeeeCcEEecCCCCC
Q 015289 322 VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTP-LLLSEDPVL--DGYEVSGAVYKFTNARG 398 (409)
Q Consensus 322 i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~p-~~~~~d~~~--~~~~~~~G~i~~p~~PG 398 (409)
++++++++++|+++|+++++|++. |++++++++||+++++|+.++|+... ..+.+|++. ++++++||++.+|++||
T Consensus 298 ite~~~ia~~A~~~g~~~~~h~~~-s~i~~aa~~hlaaa~~~~~~~e~~~~~~~~~~d~~~~~~~~~~~~G~i~~p~~PG 376 (410)
T 2qq6_A 298 LAEAKRIANLAELDYIPFAPHNVS-SPVGTVAAAHVCAAVSNFAVLEWHAIDMPHWEDFVRYPGGPVIREGHIELTEEPG 376 (410)
T ss_dssp HHHHHHHHHHHHTTTCCBCCBCCS-CHHHHHHHHHHHHSCTTBCCEEECCTTCTTGGGGBCCSSSSSEETTEEECCSSSG
T ss_pred HHHHHHHHHHHHHcCCeEeecCCC-cHHHHHHHHHHHHhCCCceeeecccccchhhhhhcccCCCceeeCCEEECCCCCC
Confidence 999999999999999999999995 99999999999999999988886321 113568887 78899999999999999
Q ss_pred cccccCCCCc
Q 015289 399 HGGFLHWDNI 408 (409)
Q Consensus 399 lG~~~d~d~~ 408 (409)
||+++|++.+
T Consensus 377 lGv~~d~~~l 386 (410)
T 2qq6_A 377 LGLELDEEAA 386 (410)
T ss_dssp GGCCBCHHHH
T ss_pred CCceeCHHHH
Confidence 9999999865
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-64 Score=509.59 Aligned_cols=350 Identities=18% Similarity=0.273 Sum_probs=299.0
Q ss_pred eeeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHH--HHHHHHH-HHHHHHcC
Q 015289 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQ--TAMVKAS-EACEVLKE 120 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~--~~~~~~~-~~~~~l~g 120 (409)
|+|||++|+++++++|++.||+++. ++.++|||+|+ |++||||+.+.+. ..++.+ .+...++ .++|.|+|
T Consensus 1 m~mkI~~i~~~~~~~pl~~p~~~s~-----~~~~~V~v~td-G~~G~GE~~~~~~-~~~~~~~~~~~~~i~~~l~~~l~G 73 (401)
T 2hzg_A 1 MSLKIDAVDLFYLSMPEVTDAADGS-----QDALLVRVAAG-GHIGWGECEAAPL-PSIAAFVCPKSHGVCRPVSDSVLG 73 (401)
T ss_dssp -CCBEEEEEEEEEECSSCCSSSCGG-----GEEEEEEEEET-TEEEEEEECSCHH-HHHHHHHCCCSBTTBCCGGGGTTT
T ss_pred CCCEEEEEEEEEEeccCCCcccccc-----ceEEEEEEEeC-CcEEEEeeecccC-CcccchhHHHHHHHHHHHHHHhCC
Confidence 4699999999999999999999886 67899999999 9999999987531 122211 1122234 37899999
Q ss_pred CCCCCHHH-HHHHHHhhc-CC-ChhhH--HHHHHHHHHHHHHHhhcCCchHHHhCCCC-Ceeeeeeeec-CCCHHHHHHH
Q 015289 121 SPAMALGS-VFGVVAGLL-PG-HQFAS--VRAAVEMALIDAVAKSVSMPLWRLFGGVS-NTITTDITIP-IVSPAEAAEL 193 (409)
Q Consensus 121 ~~~~~~~~-~~~~~~~~~-~g-~~~~~--a~said~AlwDl~gk~~g~Pl~~LLGg~~-~~i~~~~~i~-~~~~~~~~~~ 193 (409)
+ +.+++. +++.....- .| ...+. +++||||||||+.||..|+|+|+||||.. +++|+|.++. ..+++++.+.
T Consensus 74 ~-~~~~~~~l~~~~~~~~~~g~~~~~~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~vp~~~~~~~~~~~~~~~~~ 152 (401)
T 2hzg_A 74 Q-RLDGPDDIARIAALVGYNSMDLLQAPHMLSGIEMALWDLLGRRLSAPAWALLGYSASHGKRPYASLLFGDTPQETLER 152 (401)
T ss_dssp C-BCSSHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCSCCCCBEEEEEEECCSSHHHHHHH
T ss_pred C-CCCHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHHHHhCCcHHHHcCCCCCCceEeeEEcCCCCCHHHHHHH
Confidence 9 888752 222221110 12 01246 89999999999999999999999999975 6899996544 6789999999
Q ss_pred HHHHHHcCCCeEEEe---cCCCh-hHHHHHHHHHHhh-CCCcEEEEeCCCCC--CHHHHHHHHHHHHhCCCCCceeecCC
Q 015289 194 ASKYRKQGFTTLKLK---VGKNL-KEDIEVLRAIRAV-HPDSSFILDANEGY--KPQEAVEVLEKLYEMGVTPVLFEQPV 266 (409)
Q Consensus 194 ~~~~~~~Gf~~~KiK---vG~~~-~~d~~~l~avr~~-~~~~~l~vDaN~~w--~~~~A~~~~~~L~~~~l~~~~iEeP~ 266 (409)
+++++++||+++|+| +|.++ +.|++++++||++ ++++.|++|+|++| +.++|+++++.|+++++. |||||+
T Consensus 153 a~~~~~~Gf~~iKik~spvG~~~~~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~~~a~~~~~~l~~~~i~--~iEqP~ 230 (401)
T 2hzg_A 153 ARAARRDGFAAVKFGWGPIGRGTVAADADQIMAAREGLGPDGDLMVDVGQIFGEDVEAAAARLPTLDAAGVL--WLEEPF 230 (401)
T ss_dssp HHHHHHTTCSEEEEESTTTTSSCHHHHHHHHHHHHHHHCSSSEEEEECTTTTTTCHHHHHTTHHHHHHTTCS--EEECCS
T ss_pred HHHHHHhCCCeEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCC--EEECCC
Confidence 999999999999999 99888 9999999999997 89999999999999 999999999999999974 999999
Q ss_pred CCCCHHHHHHhHHHhhc-cCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccC
Q 015289 267 HRDDWEGLGHVSHIAKD-KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGM 344 (409)
Q Consensus 267 ~~~d~~~~~~l~~~~~~-~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~ 344 (409)
+++|++++++|+ + ++++||++||++.++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++| +
T Consensus 231 ~~~d~~~~~~l~----~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~h-~ 305 (401)
T 2hzg_A 231 DAGALAAHAALA----GRGARVRIAGGEAAHNFHMAQHLMDYGRIGFIQIDCGRIGGLGPAKRVADAAQARGITYVNH-T 305 (401)
T ss_dssp CTTCHHHHHHHH----TTCCSSEEEECTTCSSHHHHHHHHHHSCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEEC-C
T ss_pred CccCHHHHHHHH----hhCCCCCEEecCCcCCHHHHHHHHHCCCCCEEEeCcchhCCHHHHHHHHHHHHHcCCEEecC-C
Confidence 999999999986 4 57899999999999999999999999999999999998 999999999999999999999 8
Q ss_pred CchHHHHHHHHHHHccCCCCceeccccc-cccccCCCCCCeeee-CcEEecCCCCCcccccCCCCc
Q 015289 345 VETRLAMGFAGHLSAGLGCFKFIDLDTP-LLLSEDPVLDGYEVS-GAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 345 ~es~i~~~~~~hlaaa~~~~~~~e~~~p-~~~~~d~~~~~~~~~-~G~i~~p~~PGlG~~~d~d~~ 408 (409)
.||++++++++|++++++|+.++|++.. ..+.+|++.+++.++ ||++.+|++||||+++|++.+
T Consensus 306 ~es~i~~~a~~hlaaa~~~~~~~e~~~~~~~~~~d~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 371 (401)
T 2hzg_A 306 FTSHLALSASLQPFAGLEADRICEYPAAPQQLALDITGDHIRPDAEGLIRAPEAPGLGLQVAASAL 371 (401)
T ss_dssp CSCHHHHHHHHGGGTTCTTCCEEEEESSCCHHHHHTBSSCCCCCTTSCBCSCSSSBTSCCBCHHHH
T ss_pred CCcHHHHHHHHHHHHhCCCceeeeccCCcchHHHHhccCCceeccCCeEECCCCCcCCceECHHHH
Confidence 8999999999999999999988887421 113577888888899 999999999999999999865
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-63 Score=495.85 Aligned_cols=342 Identities=18% Similarity=0.187 Sum_probs=286.4
Q ss_pred eeeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEEC---CCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHc
Q 015289 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELS---NGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLK 119 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td---~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~ 119 (409)
|+|||++|+ .+++|++.||+++.++++.++.++|+|+|+ +|++||||+.+ +++.++.... +++ ++|.|+
T Consensus 4 m~mkI~~i~--~~~~pl~~p~~~~~~~~~~~~~~~V~v~td~~~~G~~G~GE~~~--~~~~~~~~~~---i~~~l~~~l~ 76 (392)
T 1tzz_A 4 MSVRIVDVR--EITKPISSPIRNAYIDFTKMTTSLVAVVTDVVREGKRVVGYGFN--SNGRYGQGGL---IRERFASRIL 76 (392)
T ss_dssp --CCEEEEE--EEEEECCC---------CCCEEEEEEEEEEEECSSSEEEEEEEC--CTTSCCCHHH---HHHTHHHHHH
T ss_pred CCcEEeEEE--EEEecCCCcccccccccCcceEEEEEEEECCCCCCCEEEEEecC--CCchHHHHHH---HHHHHHHHHc
Confidence 679999999 788999999999999998999999999999 99999999986 3444444333 333 789999
Q ss_pred CCCC----------CCHHHHHHHHHhhcC--CC-hhhHHHHHHHHHHHHHHHhhcCCchHHHhC----C-CCCeeeeeee
Q 015289 120 ESPA----------MALGSVFGVVAGLLP--GH-QFASVRAAVEMALIDAVAKSVSMPLWRLFG----G-VSNTITTDIT 181 (409)
Q Consensus 120 g~~~----------~~~~~~~~~~~~~~~--g~-~~~~a~said~AlwDl~gk~~g~Pl~~LLG----g-~~~~i~~~~~ 181 (409)
|+++ .+++.+|+.+.+... +. ..+.+++||||||||+.||..|+|+|+||| | .++++|+|.+
T Consensus 77 G~d~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~a~~aid~AlwDl~ak~~g~Pl~~llG~~~~g~~~~~v~~y~~ 156 (392)
T 1tzz_A 77 EADPKKLLNEAGDNLDPDKVWAAMMINEKPGGHGERSVAVGTIDMAVWDAVAKIAGKPLFRLLAERHGVKANPRVFVYAA 156 (392)
T ss_dssp TSCGGGSBCTTSSSBCHHHHHHHHTTTCCSCCCSHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHTTSCCCCEEEEEEE
T ss_pred CCCchhhhcccccccCHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHHcCCcHHHHcCCccCCCcCCCeeEEEe
Confidence 9999 999999999876432 22 245799999999999999999999999999 8 5678999876
Q ss_pred ecC----CCHHHHHHHHHHHHHcCCCeEEEecCC-ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhC
Q 015289 182 IPI----VSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEM 255 (409)
Q Consensus 182 i~~----~~~~~~~~~~~~~~~~Gf~~~KiKvG~-~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~ 255 (409)
.+. .+++++.+.+++++++||+++|+|+|. +++.|++++++||++ ++++.|++|+|++|+.++|+++++.|+++
T Consensus 157 ~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~ 236 (392)
T 1tzz_A 157 GGYYYPGKGLSMLRGEMRGYLDRGYNVVKMKIGGAPIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGIAYAKMLRDY 236 (392)
T ss_dssp CCCC----CHHHHHHHHHHHHTTTCSEEEEECSSSCHHHHHHHHHHHHHHHTTTCEEEEECTTCCCHHHHHHHHHHHTTS
T ss_pred CCcccCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHc
Confidence 443 378999999999999999999999995 889999999999997 89999999999999999999999999999
Q ss_pred CCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcC----CCCEEEeCCCCCc-HHHHHHHHH
Q 015289 256 GVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN----LADVINIKLAKVG-VLGALEIIE 330 (409)
Q Consensus 256 ~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~----a~div~~k~~~~G-i~~~~~i~~ 330 (409)
++. |||||++++|++++++|++ ++++||++||+++++++++++++.+ ++|++|+|++++| +++++++++
T Consensus 237 ~i~--~iEqP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~~~~~d~v~ik~~~~GGit~~~~i~~ 310 (392)
T 1tzz_A 237 PLF--WYEEVGDPLDYALQAALAE----FYPGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFDCALSYGLCEYQRTLE 310 (392)
T ss_dssp CCS--EEECCSCTTCHHHHHHHTT----TCCSCEEECTTCCSHHHHHHHHHHSCCCTTTCEECCCTTTTTCHHHHHHHHH
T ss_pred CCC--eecCCCChhhHHHHHHHHh----hCCCCEEECCCCCCHHHHHHHHHcCCCccCCcEEEECccccCCHHHHHHHHH
Confidence 874 9999999999999999864 6789999999999999999999999 9999999999998 999999999
Q ss_pred HHHHcCCc---EEEccCCchHHHHHHHHHHHccCCCC---ceeccccccccccCCCCCCeeeeCcEEecCCCCCcccccC
Q 015289 331 VVRASGLN---LMIGGMVETRLAMGFAGHLSAGLGCF---KFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLH 404 (409)
Q Consensus 331 ~A~~~gi~---~~~~~~~es~i~~~~~~hlaaa~~~~---~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d 404 (409)
+|+++|++ +++|+. + ++.+|+++++++. .+.+++.++ .+++. +++++||++.+|++||||+++|
T Consensus 311 ~A~~~gi~~~~~~~~~~-----~-~~~~hl~aa~~~~~~~~~~~~~~~~---~~~~~-~~~~~~G~~~~p~~PGlGv~~d 380 (392)
T 1tzz_A 311 VLKTHGWSPSRCIPHGG-----H-QMSLNIAAGLGLGGNESYPDLFQPY---GGFPD-GVRVENGHITMPDLPGIGFEGK 380 (392)
T ss_dssp HHHHTTCCGGGBCCSCC-----B-HHHHHHHHHHTCSCEEECTTCSTTT---BSCST-TCCCBTTEEECCCCSBTSGGGC
T ss_pred HHHHCCCCCceEeecHH-----H-HHHHHHHHhCCCccccccccccchH---HhccC-CcceeCCEEECCCCCccCCccC
Confidence 99999999 999941 1 1358999998865 345555442 34555 7888999999999999999999
Q ss_pred CCCc
Q 015289 405 WDNI 408 (409)
Q Consensus 405 ~d~~ 408 (409)
++.+
T Consensus 381 ~~~~ 384 (392)
T 1tzz_A 381 SDLY 384 (392)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9865
|
| >3ekg_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, nysgrc, L-rhamnonate dehydratase,target PSI-2; HET: TLA; 1.60A {Azotobacter vinelandii avop} PDB: 2oz3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-62 Score=487.92 Aligned_cols=331 Identities=18% Similarity=0.233 Sum_probs=275.7
Q ss_pred eEeEEEEEEEE--------------------ecCcc-----ceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCc
Q 015289 47 DVQRAENRPLN--------------------VPLIA-----PFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTA 101 (409)
Q Consensus 47 kI~~i~~~~~~--------------------~pl~~-----p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~ 101 (409)
||++|+.|.+. .|+.+ ++++|.| .+.+++++|||+||+|++||||+.. +
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ts~g-~~~~~~v~V~v~td~G~~G~Ge~~~-----g 80 (404)
T 3ekg_A 7 TIKQVRAFVLRGGGADYHDQGDGHWIDDHISTPMGKYPEYRQSRRSFG-INVLGTLVVEIEASDGNVGFAVTTG-----G 80 (404)
T ss_dssp BEEEEEEEEECSSTTSTTCCCTTCGGGSSCCCTTTTSGGGTSCTGGGT-TTSSCEEEEEEEETTSCEEEEEEEC-----H
T ss_pred ceeeEEEEEecCCCCccCCCCCCceecccccCcchhhhhhcccccccC-cccccEEEEEEEECCCCEEEEeCCC-----c
Confidence 67888877775 34432 3455555 4567899999999999999999863 2
Q ss_pred ccHHHHHHHH-HHHHHHHcCCCCCCHHHHHHHHHhhc--CC--ChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCe
Q 015289 102 EDQQTAMVKA-SEACEVLKESPAMALGSVFGVVAGLL--PG--HQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNT 175 (409)
Q Consensus 102 e~~~~~~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~--~g--~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~ 175 (409)
+... ..+ +.+.|.|+|+++.+++.+|+.+++.. .+ .....|+||||||||||+||.+|+|||+||||. +++
T Consensus 81 ~~~~---~~i~~~l~p~LiG~dp~~ie~i~~~m~~~~~~~g~~G~~~~A~sAID~ALwDl~gK~~g~Pv~~LLGG~~r~~ 157 (404)
T 3ekg_A 81 EPAA---YIVEKHLARFLEGARVTDIERIWDQMYNSTLYYGRKGLVINTISGVDLALWDLLGKVRREPVHQLLGGAVRDE 157 (404)
T ss_dssp HHHH---HHHHHTTHHHHTTSBTTCHHHHHHHHHHHHGGGCSSTHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSSSE
T ss_pred HHHH---HHHHHHHHHHHCCCCcccHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHhCCCHHHHcCCCCCCe
Confidence 2221 123 34789999999999999999997642 12 223568999999999999999999999999996 578
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCC-------ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHH
Q 015289 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVE 247 (409)
Q Consensus 176 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~-------~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~ 247 (409)
||+|.+.. +++ .++++||+++|+|++. ++++|++++++||++ +|++.|++|+|++|++++|++
T Consensus 158 v~~y~~g~--~~~-------~~~~~Gf~~~K~Kv~~g~~~g~~~~~~di~~v~avRea~G~~~~L~vDaN~~w~~~~A~~ 228 (404)
T 3ekg_A 158 LQFYATGA--RPD-------LAQKMGFIGGKMPLHHGPSEGEEGLKKNLEELATMRERVGPDFWLMFDCWMSLDLNYATR 228 (404)
T ss_dssp EEEEEESS--CHH-------HHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHH
T ss_pred eEEecCCC--CHH-------HHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHHHhCCCCeEEecCCCCCCHHHHHH
Confidence 99997632 332 2356899999999963 357899999999998 899999999999999999999
Q ss_pred HHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCC--CeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHH
Q 015289 248 VLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG--VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLG 324 (409)
Q Consensus 248 ~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~--ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~ 324 (409)
++++|+++++ .|||||++++|++++++|++ +++ +||++||++++.++++++++.+++|++|+|++++| +++
T Consensus 229 ~~~~Le~~~l--~~iEeP~~~~d~~~~a~l~~----~~~~pi~Ia~gE~~~~~~~~~~li~~~a~dii~~d~~~~GGite 302 (404)
T 3ekg_A 229 LARGAREYGL--KWIEEALPPDDYWGYAELRR----NAPTGMMVTTGEHEATRWGFRMLLEMGCCDIIQPDVGWCGGVTE 302 (404)
T ss_dssp HHHHHGGGTC--CEEECCSCTTCHHHHHHHHH----HSCTTCEEEECTTCCHHHHHHHHHHTTCCSEECCCTTTTTHHHH
T ss_pred HHHHHhhcCC--cEEecCCCcccHHHHHHHHH----hcCCCeEEEecCccCCHHHHHHHHHcCCCCeEecChhhcCCccH
Confidence 9999999987 49999999999999999985 444 45999999999999999999999999999999998 999
Q ss_pred HHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecccc--c-----cccccCCCCCCeeeeCcEEecC--C
Q 015289 325 ALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDT--P-----LLLSEDPVLDGYEVSGAVYKFT--N 395 (409)
Q Consensus 325 ~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~--p-----~~~~~d~~~~~~~~~~G~i~~p--~ 395 (409)
+++++++|+++|+++++|++. .+++|++++++|+.++|+.. + ..+.++++.+++.++||++.+| +
T Consensus 303 a~kia~lA~a~gv~v~~h~~~------~a~~hl~aa~pn~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~dG~i~vP~~~ 376 (404)
T 3ekg_A 303 LLKISALADAHNALVVPHGSS------VYSYHFVATRQNSPFAEFLMMAPKADQVVPMFHPQLLGEPVPENGRMRLSRLD 376 (404)
T ss_dssp HHHHHHHHHHTTCEECCCCCT------HHHHHHHTTCTTCCSEEEECCSTTSCSCCCTTTTTEETCCCCBTTEEEGGGCC
T ss_pred HHHHHHHHHHcCCEEEecCcH------HHHHHHHHhCCCcceeeeccccccccccchhhhhcccCCCcccCCEEECCCCC
Confidence 999999999999999999962 27899999999998888642 1 1234566666777899999999 9
Q ss_pred CCCcccccCCCC
Q 015289 396 ARGHGGFLHWDN 407 (409)
Q Consensus 396 ~PGlG~~~d~d~ 407 (409)
+||||+++|++.
T Consensus 377 ~PGLGveld~~~ 388 (404)
T 3ekg_A 377 QPGFGVTLNPEC 388 (404)
T ss_dssp SSBTSCEECTTS
T ss_pred CCcccceECccc
Confidence 999999999985
|
| >3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily, NYSGXRC, target 9265J, lyase, structural genomics, PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-62 Score=497.20 Aligned_cols=333 Identities=17% Similarity=0.198 Sum_probs=278.7
Q ss_pred eEeEEEEEEE-----------------------EecCcccee-----eccceeeeeeEEEEEEEECCCceEEEEeccCCc
Q 015289 47 DVQRAENRPL-----------------------NVPLIAPFT-----IATSRLDQVENVAIRIELSNGCVGWGEAPVLPH 98 (409)
Q Consensus 47 kI~~i~~~~~-----------------------~~pl~~p~~-----~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~ 98 (409)
||++|+.|.+ +.||++++. +|+|. ..++.++|||+||+|++||||+...
T Consensus 10 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~~ts~g~-~~~~~vlV~V~tddGi~G~Ge~~~~-- 86 (455)
T 3fxg_A 10 KIKAIRSFIIGGVGSGGDYHNVKGGHWLIDSDISTPASKWEQYKKSRTSWGI-NVLGSFLVEIEATDGTVGFATGFGG-- 86 (455)
T ss_dssp CEEEEEEEEECSSSCSSCTTCCCTTCHHHHSCCCCTTTTSGGGTSCTTTTTT-TSSCEEEEEEEETTSCEEEEEEECH--
T ss_pred cceeEEeEEeecccCCCCCCCCCCCcccccccccCccccccccccccccccc-ccceEEEEEEEECCCCEEEEeCcCC--
Confidence 6888888776 378877773 34443 2478899999999999999998642
Q ss_pred cCcccHHHHHHHH-HHHHHHHcCCCCCCHHHHHHHHHhhc--CCC--hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-
Q 015289 99 VTAEDQQTAMVKA-SEACEVLKESPAMALGSVFGVVAGLL--PGH--QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV- 172 (409)
Q Consensus 99 ~~~e~~~~~~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~--~g~--~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~- 172 (409)
+.. ...+ +.+.|.|+|++|.+++.+|+.|++.. .|. ....|+||||||||||+||.+|+|||+||||.
T Consensus 87 ---~~~---~~~i~~~lap~LiG~dp~~ie~i~~~m~~~~~~~g~~G~~~~A~sAID~ALwDl~gK~~g~Pv~~LLGG~~ 160 (455)
T 3fxg_A 87 ---PPA---CWLVHQHFERFLIGADPRNTNLLFEQMYRASMFYGRKGLPIAVISVIDLALWDLLGKVRNEPVYRLIGGAT 160 (455)
T ss_dssp ---HHH---HHHHHHTTHHHHTTCCTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHTCBGGGGTTCCS
T ss_pred ---HHH---HHHHHHHHHHHHCCCCcchHHHHHHHHHHhhhhccCCcchHHHHHHHHHHHHHHHHHHcCCCHHHHhCCcc
Confidence 221 1223 34789999999999999999998753 221 22468999999999999999999999999997
Q ss_pred CCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCC-------ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHH
Q 015289 173 SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQE 244 (409)
Q Consensus 173 ~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~-------~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~ 244 (409)
+++||+|.+. .+++ .++++||+++|+|++. ++++|++++++||++ +|++.|++|+|++|++++
T Consensus 161 rd~vp~y~~g--~~~~-------~~~~~Gf~~~KlKv~~~~~~G~~~~~~di~rv~avRea~G~d~~L~vDaN~~wt~~~ 231 (455)
T 3fxg_A 161 KERLDFYCTG--PEPT-------AAKAMGFWGGKVPLPFCPDDGHEGLRKNVEFLRKHREAVGPDFPIMVDCYMSLNVSY 231 (455)
T ss_dssp CSEEEEEEES--SCHH-------HHHHHTCSCEEEECCCCGGGHHHHHHHHHHHHHHHHHHHCSSSCEEEECTTCCCHHH
T ss_pred CCeeEEeecC--CCHH-------HHHHcCCCEEEEcCCCCcccccccHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHH
Confidence 5789999863 2332 2456899999999963 357899999999998 799999999999999999
Q ss_pred HHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccC-CCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-H
Q 015289 245 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-V 322 (409)
Q Consensus 245 A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~-~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i 322 (409)
|++++++|+++++ .|||||++++|++++++|++ ++ .+|||+||++++.++++++++.+++|++|+|++++| +
T Consensus 232 Ai~~~~~Le~~~l--~~iEEPl~~dd~~~la~L~~----~~~~iPIA~gEs~~s~~d~~~li~~~avDiiq~d~~~~GGI 305 (455)
T 3fxg_A 232 TIELVKACLDLNI--NWWEECLSPDDTDGFALIKR----AHPTVKFTTGEHEYSRYGFRKLVEGRNLDIIQPDVMWLGGL 305 (455)
T ss_dssp HHHHHHHTGGGCC--SEEECCSCGGGGGGHHHHHH----HCTTSEEEECTTCCHHHHHHHHHTTCCCSEECCCTTTSSCH
T ss_pred HHHHHHhcccCCc--ceecCCCCcchHHHHHHHHH----hCCCCeEECCCccCCHHHHHHHHHcCCCCEEEECccccCCH
Confidence 9999999999987 49999999999999999975 34 589999999999999999999999999999999997 9
Q ss_pred HHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecccc--cc-----ccccCCCCCCeeeeCcEEecC-
Q 015289 323 LGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDT--PL-----LLSEDPVLDGYEVSGAVYKFT- 394 (409)
Q Consensus 323 ~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~--p~-----~~~~d~~~~~~~~~~G~i~~p- 394 (409)
+++++++++|+++|+++++|++. .+++||++++||+.+.|+.. +. .+..+++.+.+.++||++.+|
T Consensus 306 tea~kIa~lA~a~Gv~v~~H~~~------~aslHlaaa~pn~~~~E~~~~~~~~~~~~~~~~~l~~~~~~~~dG~i~vp~ 379 (455)
T 3fxg_A 306 TELLKVAALAAAYDVPVVPHASG------PYSYHFQISQPNTPFQEYLANSPDGKSVLPVFGDLFIDEPIPTKGYLTTAD 379 (455)
T ss_dssp HHHHHHHHHHHTTTCCBCCCSCT------HHHHHHHTTCTTCCCEEEECCSTTSSSCCCTTGGGBSCCCCCTTSEEETGG
T ss_pred HHHHHHHHHHHHcCCEEEecchH------HHHHHHHHhCCCCceEeecccccccccccchhcccccCCCeeeCCEEeCCC
Confidence 99999999999999999999973 36899999999999888642 21 123456666677899999999
Q ss_pred -CCCCcccccCCCCcC
Q 015289 395 -NARGHGGFLHWDNIA 409 (409)
Q Consensus 395 -~~PGlG~~~d~d~~~ 409 (409)
++||||+++|++.++
T Consensus 380 ~d~PGLGvelde~~~~ 395 (455)
T 3fxg_A 380 LDKPGFGLTINPAARA 395 (455)
T ss_dssp GCSSBTCCCBCHHHHT
T ss_pred CCCCccCcccCHHHHH
Confidence 999999999998763
|
| >3caw_A O-succinylbenzoate synthase; structural genomics, PSI-2, NYSGXRC, target 9462A, protein structure initiative; 1.87A {Bdellovibrio bacteriovorus HD100} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-61 Score=475.05 Aligned_cols=302 Identities=19% Similarity=0.239 Sum_probs=256.4
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (409)
|||+ ++++++|++.||+++ ++++.++.++|||+|++|++||||+.+.+.+++|+.+..+ . +.+
T Consensus 2 MkI~---~~~~~~pl~~p~~~s-~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~~l---~---~~l------- 64 (330)
T 3caw_A 2 IKIS---YSPYTLKPVQSLNAA-TAATAREGVLLKVEWNDGLYGFADLHPWPELGDLSLEEQL---S---DLR------- 64 (330)
T ss_dssp -CEE---EEEEEECBC-----------CEEEEEEEEECTTSCEEEEEECCCGGGTCCCHHHHH---H---HHH-------
T ss_pred cEEE---EEEEEeecCCCeEee-eEEEEeeEEEEEEEECCCCEEEEeecCCCCcCcccHHHHH---H---HHH-------
Confidence 7888 889999999999999 9899999999999999999999999987777788765422 2 222
Q ss_pred HHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeec-C--CCHHHHHHHHHHHHHcCC
Q 015289 126 LGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIP-I--VSPAEAAELASKYRKQGF 202 (409)
Q Consensus 126 ~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~-~--~~~~~~~~~~~~~~~~Gf 202 (409)
+ . + ..+++++|||+||||++||..|+|+|+ || +++++|.+++ . .+++++. +++++||
T Consensus 65 -------l-~--~--~~~~a~said~AlwDl~gk~~g~Pl~~--Gg--~~v~~~~~~~~~~~~~~~~~~----~~~~~G~ 124 (330)
T 3caw_A 65 -------M-G--R--MTTQIEQSIWLARRDALLRKEKKHVFD--GG--EKIKNNYLLSHFQDLKPGFLD----GLKNEGY 124 (330)
T ss_dssp -------H-T--C--CCHHHHHHHHHHHHHHHHHHTTCBTTT--TS--CCCCBCEEECTTSCCCTTHHH----HHHHHTC
T ss_pred -------h-c--c--chHHHHHHHHHHHHHHHHHHcCCcccc--CC--CceEEEEEecCCCCCCHHHHH----HHHHcCC
Confidence 1 1 1 224689999999999999999999999 87 8899999998 6 6887775 5677899
Q ss_pred CeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHh---CCCCCceeecCCCCC-CHHHHHHhH
Q 015289 203 TTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE---MGVTPVLFEQPVHRD-DWEGLGHVS 278 (409)
Q Consensus 203 ~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~---~~l~~~~iEeP~~~~-d~~~~~~l~ 278 (409)
+++|+|+|.++++|++++++||+ |++.|++|+|++|++++|++++++|++ +++ .|||||++++ |++++ |
T Consensus 125 ~~~KiKvg~~~~~d~~~v~avr~--~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~l--~~iEqP~~~~~d~~~~--l- 197 (330)
T 3caw_A 125 NTVKVKMGRDLQKEADMLTHIAA--SGMRMRLDFNALGSWQTFEKFMVNLPLTVRPLI--EYVEDPFPFDFHAWGE--A- 197 (330)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHH--TTCEEEEECTTCSCHHHHHHHHHTSCTTTGGGE--EEEECCSSCCHHHHHH--H-
T ss_pred cEEEEecCCCHHHHHHHHHHHhC--CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCc--eEEECCCCCCccHHHH--H-
Confidence 99999999999999999999999 999999999999999999999999999 876 5999999999 99888 4
Q ss_pred HHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHH
Q 015289 279 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLS 358 (409)
Q Consensus 279 ~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hla 358 (409)
+ ++ +|||+||+ +.++++++++.+++|++|+|++++|++ +++++|+++|+++++|||+||+++.++++|++
T Consensus 198 ---~-~~-iPIa~dEs--~~~~~~~~i~~~a~d~v~~k~~~~Gi~---~i~~~A~~~gi~~~~~~~~es~ig~aa~~hla 267 (330)
T 3caw_A 198 ---R-KL-AKIALDNQ--YDKVPWGKIASAPFDVIVIKPAKTDVD---KAVAQCQKWNLKLAVTSYMDHPVGVVHAVGVA 267 (330)
T ss_dssp ---T-TT-SCEEESTT--GGGCCTTTCSSCSCSEEEECTTTSCHH---HHHHHHHHTTCEEEEBCCSCCHHHHHHHHHHH
T ss_pred ---H-hc-CcEEeCCC--CHHHHHHHHHcCCCCEEEechhhccHH---HHHHHHHHcCCcEEEeCccCcHHHHHHHHHHH
Confidence 3 57 99999999 999999999999999999999999988 99999999999999999999999999999999
Q ss_pred c----cCCCCce--eccccccccccCCCCCCeeeeCcEEecCCCCCcccc
Q 015289 359 A----GLGCFKF--IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGF 402 (409)
Q Consensus 359 a----a~~~~~~--~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~ 402 (409)
+ ++||+.. .+++++++ .+|++.+++.++||++.+|++||||++
T Consensus 268 a~~~~a~~~~~~~~~dl~~~~~-~~d~~~~~~~~~~G~~~~p~~PGlGv~ 316 (330)
T 3caw_A 268 MELKDKYGDMILESGCLTHRLY-QMDSFAAELSTQGPYLLKNKGTGVGFD 316 (330)
T ss_dssp HHHHHHHGGGBCCBBCCCGGGB-CCCTTGGGCCEETTEECCCSSSBTSCH
T ss_pred ccchhcCCCcccccccCCchhh-hcccccCCceeECCEEECCCCCCCCHH
Confidence 9 8887432 34655443 678888888999999999999999998
|
| >4gfi_A Mandelate racemase/muconate lactonizing enzyme FA protein; putative L-Ala-L/D-Glu epimerase; HET: GLU; 1.90A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-60 Score=468.37 Aligned_cols=320 Identities=28% Similarity=0.352 Sum_probs=272.1
Q ss_pred eEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHH-HHcCCCCCCHH
Q 015289 49 QRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACE-VLKESPAMALG 127 (409)
Q Consensus 49 ~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~-~l~g~~~~~~~ 127 (409)
.+++++.+++||+.||++|+|+.++++.++|||+ |+|++||||+.+.|.| +|+.+.+...++.+.+ .+.+.+ .+
T Consensus 5 r~l~~~~~r~pl~~pF~is~g~~t~~~~v~V~i~-d~G~~G~GE~~p~~~~-get~e~~~~~l~~~~~~~~~~~~---~~ 79 (329)
T 4gfi_A 5 RYLQATTERFAVAGSFTISRGTRTHADVVTCTIR-DGSFTGIGECVPYPRY-GESIEGVTADIEAMADRVAAGLT---RQ 79 (329)
T ss_dssp CEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEE-ETTEEEEEEECCCGGG-TCCHHHHHHHHHTTHHHHHHTCC---HH
T ss_pred cEEEEEEEEEeccCcEEccCeEEEEeEEEEEEEE-ECCEEEEEeccCCCCC-CcCHHHHHHHHHHHhhhhccccc---hh
Confidence 5889999999999999999999999999999996 6899999999988766 4777666655554443 333332 22
Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCC-CeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEE
Q 015289 128 SVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVS-NTITTDITIPIVSPAEAAELASKYRKQGFTTLK 206 (409)
Q Consensus 128 ~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~-~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~K 206 (409)
. ..... ++ ..|++||||||||+.||..|+|+|+||||.. +++++|.+++..+++++..++. ...||+.+|
T Consensus 80 ~----~~~~~-~~--~~a~aaid~AlwDl~gk~~g~pl~~llgG~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~K 150 (329)
T 4gfi_A 80 E----LQQVM-KP--GAARNAVDCALWDLEAKMSGKRAAEQVLGQPAQPLVTAYTISLADPDTMAAKTA--ENAGRPLLK 150 (329)
T ss_dssp H----HHHHS-CS--SHHHHHHHHHHHHHHHHHHSCCHHHHHHSSCCCCEECCEEECCCCHHHHHHHHH--HTTTSSEEE
T ss_pred h----HHhhc-cc--HHHHHHHHHHHHHHHhhhcCCChhHHhCCCCCCceeeeecccCCChHHHHHHHH--hhccccEEE
Confidence 1 11222 22 3589999999999999999999999998864 5899999999999988776654 357999999
Q ss_pred EecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCC
Q 015289 207 LKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG 286 (409)
Q Consensus 207 iKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ 286 (409)
+|+|. ..|+++++++|+++|++.||+|||++||+++|+++++.|+++++. |||||++++|.+++.+ .++.
T Consensus 151 ik~g~--~~d~~~v~~vr~~g~d~~l~vDaN~~w~~~~A~~~~~~l~~~~i~--~iEqP~~~~~~~~~~~------~~~~ 220 (329)
T 4gfi_A 151 IKTGT--ADDEARLRAVRAAAPEARIIIDANEGWNDDNIEYYLKLAAELKIS--LIEQPLPAGKDAMLAR------IEHP 220 (329)
T ss_dssp EECCS--SCCHHHHHHHHHHCTTSEEEEECTTCCCTTTHHHHHHHHHHTTCC--EEECCSCTTSCGGGGG------SCCS
T ss_pred ecCCc--ccHHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHhhhhcCce--EEEecCCCccHHHHHH------hcCC
Confidence 99986 578999999999999999999999999999999999999999974 9999999998766543 3578
Q ss_pred CeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCc
Q 015289 287 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFK 365 (409)
Q Consensus 287 ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~ 365 (409)
+||++||++++..++.+. .+++|++|+|++++| ++++++++++|+++|+++++|||+||++++++++|+|+.+ .
T Consensus 221 ipia~dEs~~~~~d~~~~--~~a~d~i~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~~es~i~~aa~~~la~~~---~ 295 (329)
T 4gfi_A 221 VLICADESVHSTEDLAGL--RDRYDAINIKLDKTGGLTEALVMKAEAERLGFTIMVGCMLGTSLGMAPAVLVAQGT---A 295 (329)
T ss_dssp SEEEESTTCCTGGGSGGG--TTTCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCSCCHHHHHHHHHHTTTC---S
T ss_pred CCchhccCCCCHHHHHHH--hhccCeEEecCceeCCHHHHHHHHHHHHHCCCEEEECCcchhHHHHHHHHHHHhCC---C
Confidence 999999999999998764 468999999999998 9999999999999999999999999999999999999754 5
Q ss_pred eeccccccccccCCCCCCeeeeCcEEecCCCCCc
Q 015289 366 FIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGH 399 (409)
Q Consensus 366 ~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGl 399 (409)
+.|+++|+++.+|+ .+..+.||.+.+|++|||
T Consensus 296 ~~dld~~~~l~~d~--~~~~~~dG~~~~P~~PGL 327 (329)
T 4gfi_A 296 FADLDGPLLLAEDR--DPGLVYEGSLVYPARPEL 327 (329)
T ss_dssp EECCCHHHHBSSCC--SSCCCEETTEECCCCTTT
T ss_pred eeccCcchhhhccC--CCCcEEcCeEECCCCCCC
Confidence 78999998888875 344567889999999997
|
| >2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-59 Score=477.37 Aligned_cols=348 Identities=21% Similarity=0.262 Sum_probs=282.0
Q ss_pred eeEeEEEEEEEEecCccceeeccc--eeeeeeEEEEEEEECC--CceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATS--RLDQVENVAIRIELSN--GCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKES 121 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~--~~~~~~~~iVrl~td~--G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~ 121 (409)
|||++|+++.+++|++.||..+.+ +...++.++|+|+||+ |++||||+.+.+ .+.+.+. ..++.+.|.|+|+
T Consensus 2 mkI~~i~~~~~~~p~~~p~~~~~~~~~~~~~~~~~V~v~td~~~G~~G~Ge~~~~g-~~~~~v~---~~i~~l~~~liG~ 77 (441)
T 2hxt_A 2 RTIIALETHDVRFPTSRELDGSDAMNPDPDYSAAYVVLRTDGAEDLAGYGLVFTIG-RGNDVQT---AAVAALAEHVVGL 77 (441)
T ss_dssp CBEEEEEEEEEECCGGGTTTTCCSSCSSCCCEEEEEEEEESSCTTCEEEEEEEECS-TTHHHHH---HHHHTTHHHHTTC
T ss_pred CcEEEEEEEEEEecCCCCcCcccccccCCCcceEEEEEEECCCCCCEEEEeecCCC-CCcHHHH---HHHHHHHHHHcCC
Confidence 899999999999999999866543 2233578999999998 999999997643 2333333 3345678999999
Q ss_pred CCCCHHH----HHHHHHhh----cCCC---hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCC-----------------
Q 015289 122 PAMALGS----VFGVVAGL----LPGH---QFASVRAAVEMALIDAVAKSVSMPLWRLFGGVS----------------- 173 (409)
Q Consensus 122 ~~~~~~~----~~~~~~~~----~~g~---~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~----------------- 173 (409)
++.+++. +|+.+... +.+. ....|++||||||||++||..|+|||+||||..
T Consensus 78 d~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~A~said~AlwDl~gk~~g~Pl~~lLGG~~~~~~~~~~~~~~~~d~~ 157 (441)
T 2hxt_A 78 SVDKVIADLGAFARRLTNDSQLRWLGPEKGVMHMAIGAVINAAWDLAARAANKPLWRFIAELTPEQLVDTIDFRYLSDAL 157 (441)
T ss_dssp BHHHHHHCHHHHHHHHHTCHHHHHTCSSSHHHHHHHHHHHHHHHHHHHHHTTSBHHHHHHTSCHHHHHHHCCCTTCTTTC
T ss_pred ChHHHHhhHHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHcCCcHHHHhcCCCccccccccccccccccc
Confidence 9887754 56666431 1121 134689999999999999999999999999853
Q ss_pred -------------------------Ceeeeeeee-cC--CCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHh
Q 015289 174 -------------------------NTITTDITI-PI--VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRA 225 (409)
Q Consensus 174 -------------------------~~i~~~~~i-~~--~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~ 225 (409)
+.+|.|.+. +. .+++++.+.+++++++||+++|+|+|.+++.|++++++||+
T Consensus 158 ~~~~~~~~~~~~~~~~~~r~~~~~~~~vp~y~~~~g~~~~~~e~~~~~a~~~~~~Gf~~vKik~g~~~~~d~e~v~avR~ 237 (441)
T 2hxt_A 158 TRDEALAILRDAQPQRAARTATLIEQGYPAYTTSPGWLGYSDEKLVRLAKEAVADGFRTIKLKVGANVQDDIRRCRLARA 237 (441)
T ss_dssp CHHHHHHHHHHHGGGHHHHHHHHHHHCEEEEEEEEECTTSCHHHHHHHHHHHHHTTCSEEEEECCSCHHHHHHHHHHHHH
T ss_pred chhhhhhhhhcccccchhhhhhcccCCcceeEecccccCCCHHHHHHHHHHHHHcCCCEEEEccCCCHHHHHHHHHHHHH
Confidence 257777542 32 37899999999999999999999999889999999999999
Q ss_pred h-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccC-CCeEEeCCCCCCHHHHHH
Q 015289 226 V-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKK 303 (409)
Q Consensus 226 ~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~-~ipIa~dEs~~~~~~~~~ 303 (409)
+ ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|++ ++ ++||++||+++++.++++
T Consensus 238 a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~~----~~~~iPIa~dE~~~~~~~~~~ 311 (441)
T 2hxt_A 238 AIGPDIAMAVDANQRWDVGPAIDWMRQLAEFDI--AWIEEPTSPDDVLGHAAIRQ----GITPVPVSTGEHTQNRVVFKQ 311 (441)
T ss_dssp HHCSSSEEEEECTTCCCHHHHHHHHHTTGGGCC--SCEECCSCTTCHHHHHHHHH----HHTTSCEEECTTCCSHHHHHH
T ss_pred hcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCC--CeeeCCCCHHHHHHHHHHHh----hCCCCCEEEeCCcCCHHHHHH
Confidence 7 8999999999999999999999999999987 49999999999999999975 44 699999999999999999
Q ss_pred HHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHc-----cCCCC--ceecccccccc
Q 015289 304 IVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSA-----GLGCF--KFIDLDTPLLL 375 (409)
Q Consensus 304 ~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaa-----a~~~~--~~~e~~~p~~~ 375 (409)
+++.+++|++|+|++++| ++++++++++|+++|+++++|+. +.+++. ++.|+++ ..++. .++|+...
T Consensus 312 ~i~~~~~d~v~ik~~~~GGite~~~ia~~A~~~g~~~~~h~~-~~~~~~-~~~~~a~~~~~~~~~~~~~~~~e~~~~--- 386 (441)
T 2hxt_A 312 LLQAGAVDLIQIDAARVGGVNENLAILLLAAKFGVRVFPHAG-GVGLCE-LVQHLAMADFVAITGKMEDRAIEFVDH--- 386 (441)
T ss_dssp HHHHTCCSEECCCTTTSSHHHHHHHHHHHHHHTTCEECCCCC-STTHHH-HHHHHHHHHHHHTTCCCTTCCEEECCS---
T ss_pred HHHcCCCCEEEeCcceeCCHHHHHHHHHHHHHcCCeEEEecC-hHHHHH-HHHHHHhcchhhccccccCcceeechh---
Confidence 999999999999999998 99999999999999999998863 333332 2335442 22332 24454321
Q ss_pred ccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 376 SEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 376 ~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
..+.+.+++.++||++.+|++||||+++|++.+
T Consensus 387 ~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l 419 (441)
T 2hxt_A 387 LHQHFLDPVRIQHGRYLAPEVPGFSAEMHPASI 419 (441)
T ss_dssp SGGGBSSCCCEETTEECCCCSSBCSCCBCHHHH
T ss_pred hhhhccCCccccCCeEECCCCCCCCcccCHHHH
Confidence 234456778899999999999999999999865
|
| >1jpd_X L-Ala-D/L-Glu epimerase; enolase superfamily, muconate lactonizing enzyme subgroup, alpha/beta barrel, structural genomics, isomerase; 2.60A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-60 Score=461.77 Aligned_cols=319 Identities=28% Similarity=0.389 Sum_probs=268.0
Q ss_pred eEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHc-CCCCCC
Q 015289 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-ESPAMA 125 (409)
Q Consensus 47 kI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~-g~~~~~ 125 (409)
||++|+++++++|++.||+++.++.+.++.++|||+ ++|++||||+.+.+.++ ++.......++.++|.+. |. +
T Consensus 3 ~i~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~-d~G~~G~GE~~~~~~~g-~~~~~~~~~i~~~~~~l~~~~---~ 77 (324)
T 1jpd_X 3 HMRTVKVFEEAWPLHTPFVIARGSRSEARVVVVELE-EEGIKGTGECTPYPRYG-ESDASVMAQIMSVVPQLEKGL---T 77 (324)
T ss_dssp SCCEEEEEEEEEEBSCC------CCSEEEEEEEEEE-ETTEEEEEEECCCGGGT-CCHHHHHHHHHTTHHHHHTTC---C
T ss_pred ceEEEEEEEEEecccccEEecCeeEEEeeEEEEEEE-eCCceEEEEeeCCCCcC-CCHHHHHHHHHHHHHHHhcCC---C
Confidence 578999999999999999999999889999999999 78999999999876553 444444444555677774 54 3
Q ss_pred HHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeee-eeeeecCCCHHHHHHHHHHHHHcCCCe
Q 015289 126 LGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTIT-TDITIPIVSPAEAAELASKYRKQGFTT 204 (409)
Q Consensus 126 ~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~-~~~~i~~~~~~~~~~~~~~~~~~Gf~~ 204 (409)
++.+++ + .+ + ..+++||||||||+.||..|+|+|+||||..++.+ ..++++..+++++.+++++++++||++
T Consensus 78 ~~~~~~-~---~~-~--~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~G~~~ 150 (324)
T 1jpd_X 78 REELQK-I---LP-A--GAARNALDCALWDLAARRQQQSLADLIGITLPETVITAQTVVIGTPDQMANSASTLWQAGAKL 150 (324)
T ss_dssp HHHHHH-H---SC-S--SHHHHHHHHHHHHHHHHTTTCCHHHHHTCCCCSEEEBCEEECSCCHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHH-h---Cc-c--HHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCCCcceeEEeeCCCHHHHHHHHHHHHHcCCCE
Confidence 444432 2 22 1 35899999999999999999999999999754322 234566678999999999999999999
Q ss_pred EEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhcc
Q 015289 205 LKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDK 284 (409)
Q Consensus 205 ~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~ 284 (409)
+|+|+|. +.|++++++||++.|++.|++|+|++|+.++|+++++.|+++++ .|||||++++|+++++++ +
T Consensus 151 ~KiKvg~--~~d~~~v~avr~~~~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l------~ 220 (324)
T 1jpd_X 151 LKVKLDN--HLISERMVAIRTAVPDATLIVDANESWRAEGLAARCQLLADLGV--AMLEQPLPAQDDAALENF------I 220 (324)
T ss_dssp EEEECCS--SCHHHHHHHHHHHCTTSEEEEECTTCCCSTTHHHHHHHHHHTTC--CEEECCSCTTSCGGGGSS------C
T ss_pred EEEEeCC--chHHHHHHHHHHhCCCCEEEEECcCCCCHHHHHHHHHHHHhCCC--CEEECCCCCCCHHHHHhc------c
Confidence 9999996 57899999999988899999999999999999999999999987 499999999999888876 3
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCC
Q 015289 285 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGC 363 (409)
Q Consensus 285 ~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~ 363 (409)
+++||++||++++..+++++++. +|++|+|++++| ++++++++++|+++|+++++|||+||+++.++++|+++.+
T Consensus 221 ~~ipIa~dE~~~~~~~~~~~~~~--~~~i~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~~la~~~-- 296 (324)
T 1jpd_X 221 HPLPICADESCHTRSNLKALKGR--YEMVNIKLDKTGGLTEALALATEARAQGFSLMLGCMLCTSRAISAALPLVPQV-- 296 (324)
T ss_dssp CSSCEEESTTCSSGGGHHHHBTT--BSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCSCCHHHHHHHGGGGGGC--
T ss_pred CCCCEEEcCCCCCHHHHHHHHhh--CCEEEEcchhhCcHHHHHHHHHHHHHcCCcEEEeCcchHHHHHHHHHHHhhcC--
Confidence 67999999999999999999854 899999999997 9999999999999999999999999999999999999765
Q ss_pred CceeccccccccccCCCCCCeeeeCcEEec
Q 015289 364 FKFIDLDTPLLLSEDPVLDGYEVSGAVYKF 393 (409)
Q Consensus 364 ~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~ 393 (409)
.++++++|+++.+|++ ++++++||++.+
T Consensus 297 -~~~~l~~~~~~~~d~~-~~~~~~~G~i~~ 324 (324)
T 1jpd_X 297 -SFADLDGPTWLAVDVE-PALQFTTGELHL 324 (324)
T ss_dssp -SEECCCGGGGBSSCCS-SCCEEETTEEEC
T ss_pred -CccCCCchhhhhccCC-CCcEEECCEEeC
Confidence 5788988887788886 678999999864
|
| >2p3z_A L-rhamnonate dehydratase; enolase, structural genomics, PSI, protein structure initiat YORK structural genomics research consortium; 1.80A {Salmonella typhimurium LT2} PDB: 3box_A 3cxo_A* 2gsh_A 3d47_A 3d46_A 2i5q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-57 Score=454.91 Aligned_cols=306 Identities=16% Similarity=0.215 Sum_probs=257.0
Q ss_pred eeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHH-HHHHHHHcCCCCCCHHHHHHHHHhhcC---C--ChhhHHH
Q 015289 73 QVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA-SEACEVLKESPAMALGSVFGVVAGLLP---G--HQFASVR 146 (409)
Q Consensus 73 ~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~---g--~~~~~a~ 146 (409)
.++.++|||+|++|++||||+.. ++... ..+ +.+.|.|+|+++.+++.+|+.|.+... + ...+.|+
T Consensus 68 ~~~~v~V~v~td~G~~G~GE~~~-----g~~~~---~~v~~~l~p~LiG~d~~~~~~i~~~m~~~~~~~~g~~~~~~~A~ 139 (415)
T 2p3z_A 68 VLGTLIVEVEAENRQTGFAVSTA-----GEMGC---FIVEKHLNRFIEGKCVSDIKLIHDQMLGATMYYSGSGGLVMNTI 139 (415)
T ss_dssp SSCEEEEEEEETTSCEEEEEEEC-----HHHHH---HHHHHTTHHHHTTSBTTCHHHHHHHHHHHHTTTSTTSSHHHHHH
T ss_pred cceEEEEEEEECCCCEEEEEecC-----CHHHH---HHHHHHHHHHHCCCChhhHHHHHHHHHHhhhcccCCCcchHHHH
Confidence 67899999999999999999853 23221 123 347899999999999999999876421 2 1235699
Q ss_pred HHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCC-------ChhHHHH
Q 015289 147 AAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-------NLKEDIE 218 (409)
Q Consensus 147 said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~-------~~~~d~~ 218 (409)
+||||||||+.||..|+|||+||||. ++++|+|.+. .++++ ++++||+++|+|+|. ++++|++
T Consensus 140 said~ALwDl~ak~~g~Pl~~lLGG~~~~~vp~y~~g--~~~~~-------~~~~G~~~~KiK~g~g~~~G~~~~~~d~~ 210 (415)
T 2p3z_A 140 SCVDLALWDLFGKVVGLPVYKLLGGAVRDEIQFYATG--ARPDL-------AKEMGFIGGKMPTHWGPHDGDAGIRKDAA 210 (415)
T ss_dssp HHHHHHHHHHHHHHHTCBHHHHTTCCSSSEEEEEEES--SCHHH-------HHHHTCSEEEEECCCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHcCCCCCCceeeeecC--CCHHH-------HHHhCcceEEEecccCcccccccHHHHHH
Confidence 99999999999999999999999996 5689998763 24432 345799999999962 4678999
Q ss_pred HHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCC--CeEEeCCCC
Q 015289 219 VLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG--VSVAADESC 295 (409)
Q Consensus 219 ~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~--ipIa~dEs~ 295 (409)
+|++||++ ++++.|++|+|++|++++|+++++.|+++++ .|||||++++|++++++|++ +++ +||++||++
T Consensus 211 ~v~avrea~G~~~~L~vDaN~~~~~~~Ai~~~~~l~~~~i--~~iEqPl~~~d~~~~~~l~~----~~~~~ipIa~dE~~ 284 (415)
T 2p3z_A 211 MVADMREKCGPDFWLMLDCWMSQDVNYATKLAHACAPFNL--KWIEECLPPQQYEGYRELKR----NAPAGMMVTSGEHH 284 (415)
T ss_dssp HHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGTC--CEEECCSCTTCHHHHHHHHH----HSCTTCEEEECTTC
T ss_pred HHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCC--ceEeCCCCcchHHHHHHHHH----hcCCCCcEEcCCCC
Confidence 99999997 8999999999999999999999999999987 49999999999999999985 456 899999999
Q ss_pred CCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceeccccc--
Q 015289 296 RSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTP-- 372 (409)
Q Consensus 296 ~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~p-- 372 (409)
++..+++++++.+ +|++|+|++++| ++++++++++|+++|+++++|++ ..+++|++++++|+.++|+...
T Consensus 285 ~~~~~~~~~i~~~-~d~i~ik~~~~GGitea~~ia~lA~~~gi~v~~h~~------~~a~~hlaaa~p~~~~~e~~~~~~ 357 (415)
T 2p3z_A 285 GTLQSFRTLAETG-IDIMQPDVGWCGGLTTLVEIAALAKSRGQLVVPHGS------SVYSHHAVITFTNTPFSEFLMTSP 357 (415)
T ss_dssp CSHHHHHHHHHTT-CSEECCCHHHHTCHHHHHHHHHHHHHTTCCBCCCCC------HHHHHHHHTTCTTCCCEEEECCST
T ss_pred CCHHHHHHHHHcC-CCEEEeCccccCCHHHHHHHHHHHHHcCCEEEecCh------HHHHHHHHHhCCCCcccccccccc
Confidence 9999999999999 999999999997 99999999999999999999875 1358999999999988885321
Q ss_pred -----cccccCCCCCCeeeeCcEEecC--CCCCcccccCCCCc
Q 015289 373 -----LLLSEDPVLDGYEVSGAVYKFT--NARGHGGFLHWDNI 408 (409)
Q Consensus 373 -----~~~~~d~~~~~~~~~~G~i~~p--~~PGlG~~~d~d~~ 408 (409)
..+..+.+.+++.++||++.+| ++||||+++|++.+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~G~l~~p~P~~PGLGveld~~~~ 400 (415)
T 2p3z_A 358 DCSTLRPQFDPILLDEPVPVNGRIHKSVLDKPGFGVELNRDCH 400 (415)
T ss_dssp TSSSCCCTTTTTEETCCCCBTTEEEGGGGCSSBTSCEECTTSC
T ss_pred ccccccchhhhhccCCCeeECCEEECCCCCCCCcceeECHHHH
Confidence 1122344444456789999998 99999999999874
|
| >1r6w_A OSB synthase, O-succinylbenzoate synthase, OSBS; enolase superfamily, TIM barrel, capping alpha+beta domain, lyase; HET: 164; 1.62A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 PDB: 1fhv_A* 1fhu_A 2ofj_A 3gc2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-57 Score=440.22 Aligned_cols=299 Identities=21% Similarity=0.241 Sum_probs=261.8
Q ss_pred eEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHcCCCCCC
Q 015289 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPAMA 125 (409)
Q Consensus 47 kI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~~~ 125 (409)
||++++++++++|++.||.++.++.+.++.++|||+|| |++||||+.+.+++++|+...+...+++ +.|.++|+ .+
T Consensus 2 ~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~i~td-G~~G~GE~~~~~~~~~e~~~~~~~~l~~~~~~~l~g~--~~ 78 (322)
T 1r6w_A 2 HMRSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCLREG-EREGWGEISPLPGFSQETWEEAQSVLLAWVNNWLAGD--CE 78 (322)
T ss_dssp CCEEEEEEEEEEEBCTTCBC-CCBCCEEEEEEEEEEET-TEEEEEEECCCTTTCSSCHHHHHHHHHHHHHHHTTSC--CC
T ss_pred cceEEEEEEEEEeccCCeEeccEEEEeeeEEEEEEEEC-CeEEEEEecCCCCCCccCHHHHHHHHHHHHHHhhCCh--hh
Confidence 68999999999999999999999999999999999996 9999999999888888887766666654 56888887 22
Q ss_pred HHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeE
Q 015289 126 LGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTL 205 (409)
Q Consensus 126 ~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~ 205 (409)
+.+ .+.+++||||||||+.||..|+|+| +.+++| ..+++++.+.++++ +||+++
T Consensus 79 -----------l~~--~~~a~~aid~ALwDl~gk~~g~p~~-------~~v~~~----~~~~~~~~~~a~~~--~G~~~~ 132 (322)
T 1r6w_A 79 -----------LPQ--MPSVAFGVSCALAELTDTLPQAANY-------RAAPLC----NGDPDDLILKLADM--PGEKVA 132 (322)
T ss_dssp -----------CCS--SHHHHHHHHHHHHHHTTCSCCCSCC-------CCCCEE----CSCHHHHHHHHHTC--CSSEEE
T ss_pred -----------ccc--ChHHHHHHHHHHHHhcCCCCCCCcc-------ceEEEe----CCCHHHHHHHHHHh--CCCceE
Confidence 122 3578999999999999999999875 345655 45788887777654 799999
Q ss_pred EEecCC-ChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhC---CCCCceeecCCCCCCHHHHHHhHHHh
Q 015289 206 KLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEM---GVTPVLFEQPVHRDDWEGLGHVSHIA 281 (409)
Q Consensus 206 KiKvG~-~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~---~l~~~~iEeP~~~~d~~~~~~l~~~~ 281 (409)
|+|+|. ++++|+++++++|++.|++.|++|+|++|+.++|+++++.|+++ ++ .|||||++ +++++++|++
T Consensus 133 KiKvG~~~~~~d~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~i--~~iEqP~~--~~~~~~~l~~-- 206 (322)
T 1r6w_A 133 KVRVGLYEAVRDGMVVNLLLEAIPDLHLRLDANRAWTPLKGQQFAKYVNPDYRDRI--AFLEEPCK--TRDDSRAFAR-- 206 (322)
T ss_dssp EEECSSSCHHHHHHHHHHHHHHCTTEEEEEECTTCBCHHHHHHHHHTSCTTTGGGE--EEEECCBS--SHHHHHHHHH--
T ss_pred EEEeCCCCHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHhhhhccCCe--eEEECCCC--ChHHHHHHHH--
Confidence 999996 89999999999999888999999999999999999999999998 76 59999997 4788988874
Q ss_pred hccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHcc
Q 015289 282 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG 360 (409)
Q Consensus 282 ~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa 360 (409)
++++||++||++++ .++ ++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||+++.++++||+++
T Consensus 207 --~~~ipIa~dE~~~~-~~~-~~~~~~a~d~i~ik~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~ig~aa~~hlaa~ 282 (322)
T 1r6w_A 207 --ETGIAIAWDESLRE-PDF-AFVAEEGVRAVVIKPTLTGSLEKVREQVQAAHALGLTAVISSSIESSLGLTQLARIAAW 282 (322)
T ss_dssp --HHCCCEEESGGGGS-TTC-CCCCCTTEEEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEBCSSCCHHHHHHHHHHHHH
T ss_pred --hCCCCEEeCCCCCC-hhH-hhhhcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCcEEEECccccHHHHHHHHHHHHh
Confidence 57899999999999 456 6668899999999999997 999999999999999999999999999999999999999
Q ss_pred CCCCceeccccccccccCCCCCCe
Q 015289 361 LGCFKFIDLDTPLLLSEDPVLDGY 384 (409)
Q Consensus 361 ~~~~~~~e~~~p~~~~~d~~~~~~ 384 (409)
+++..+++++++.++.+|++.+++
T Consensus 283 ~~~~~~~~l~t~~~~~~d~~~~~~ 306 (322)
T 1r6w_A 283 LTPDTIPGLDTLDLMQAQQVRRWP 306 (322)
T ss_dssp HCTTSCCBCTTGGGBSCEESSCCT
T ss_pred cCCCCccCCCchhhhhhccccCCc
Confidence 988888999998888888776655
|
| >1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A {Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB: 1kd0_A* 3zvi_A 3zvh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-55 Score=441.86 Aligned_cols=307 Identities=15% Similarity=0.198 Sum_probs=259.7
Q ss_pred ccceeecccee-eeeeEEEEEEEECCCceEEEEeccCCc--cCc----ccHHHHHHHHHH-HHHHHcCCCCCCHHHHHHH
Q 015289 61 IAPFTIATSRL-DQVENVAIRIELSNGCVGWGEAPVLPH--VTA----EDQQTAMVKASE-ACEVLKESPAMALGSVFGV 132 (409)
Q Consensus 61 ~~p~~~a~~~~-~~~~~~iVrl~td~G~~G~GE~~~~~~--~~~----e~~~~~~~~~~~-~~~~l~g~~~~~~~~~~~~ 132 (409)
..||+++.++. +.++.++|+|+|++|++||||+.+.+. ++. ++.+.+...+++ ++|.|+|+++.+++.+|+.
T Consensus 36 ~~P~~~~~~~~~~~~~~v~V~v~td~G~~G~GE~~~~~~~g~g~~e~~~~~~~~~~~i~~~l~p~L~G~d~~~~~~i~~~ 115 (413)
T 1kcz_A 36 GSTVTEGFTQVRQKGESISVLLVLEDGQVAHGDCAAVQYSGAGGRDPLFLAKDFIPVIEKEIAPKLIGREITNFKPMAEE 115 (413)
T ss_dssp SCCCSTTCSSSEEECCEEEEEEEETTSCEEEEEECCCTTTTSTTSCSCCCHHHHHHHHHHHTHHHHTTCBCCCHHHHHHH
T ss_pred CCCEEcccceEeecCcEEEEEEEECCCCEEEEEEccccccccCcccccccHHHHHHHHHHHHHHHHcCCChhhHHHHHHH
Confidence 56899998887 889999999999999999999987643 211 233445555664 7899999999999999998
Q ss_pred HHhhc-CCC-hhhHHHHHHHHHHHHHHHhhcCCchHHHhCC------CCCeeeeeeeecC---CCHHHHHHHHHHHHHcC
Q 015289 133 VAGLL-PGH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGG------VSNTITTDITIPI---VSPAEAAELASKYRKQG 201 (409)
Q Consensus 133 ~~~~~-~g~-~~~~a~said~AlwDl~gk~~g~Pl~~LLGg------~~~~i~~~~~i~~---~~~~~~~~~~~~~~~~G 201 (409)
+.... .|+ ..+++++||||||||+.||..|+|+|+|||| .+++||+|.+.+. .+++++.+++++++++|
T Consensus 116 l~~~~~~g~~~~~~a~~aid~AlwDl~ak~~g~Pl~~lLGg~~~~~~~~~~vp~~~~~g~~~~~~~~~~~~~a~~~~~~G 195 (413)
T 1kcz_A 116 FDKMTVNGNRLHTAIRYGITQAILDAVAKTRKVTMAEVIRDEYNPGAEINAVPVFAQSGDDRYDNVDKMIIKEADVLPHA 195 (413)
T ss_dssp HHHCEETTEECCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHSTTCCCCCCCEECCCTTCTTHHHHHHHHTTCSEEEEC
T ss_pred HHhcccCCcchHHHHHHHHHHHHHHHHHHHhCCcHHHHhcccccCcCccCCeeeeEecCccccCCHHHHHHHHHHHHHhc
Confidence 85432 221 2357899999999999999999999999997 4568999876552 35677888888888899
Q ss_pred -CCeEEEecCCC---hhH----HHHHHHHHHhh-CCCcEEEEeCCCC------CCHHHHHHHHHHHHhC--CCCCceeec
Q 015289 202 -FTTLKLKVGKN---LKE----DIEVLRAIRAV-HPDSSFILDANEG------YKPQEAVEVLEKLYEM--GVTPVLFEQ 264 (409)
Q Consensus 202 -f~~~KiKvG~~---~~~----d~~~l~avr~~-~~~~~l~vDaN~~------w~~~~A~~~~~~L~~~--~l~~~~iEe 264 (409)
|+++|+|+|.+ +.+ |++++++||+. ++++.|++|+|++ ||+++|+++++.|+++ ++ ..||||
T Consensus 196 ~~~~~KiKvG~~~~~~~~~~~~d~~~v~avR~~~G~~~~l~vDaN~~~~~~~~~~~~~a~~~~~~L~~~~~~i-~~~iEq 274 (413)
T 1kcz_A 196 LINNVEEKLGLKGEKLLEYVKWLRDRIIKLRVREDYAPIFHIDVYGTIGAAFDVDIKAMADYIQTLAEAAKPF-HLRIEG 274 (413)
T ss_dssp CCCCCCCCCCTTSHHHHHHHHHHHHHHHHHCSSTTCCCEEEEECTTHHHHHTTTCHHHHHHHHHHHHHHHTTS-CEEEEC
T ss_pred chhheeeccCCCccchhhHHHHHHHHHHHHHHhcCCCceEEEecCCCcccccCCCHHHHHHHHHHHHhhcCCc-ceEEec
Confidence 99999999965 444 89999999997 7899999999999 9999999999999998 55 259999
Q ss_pred CCCC----CCHHHHHHhHHHhh-ccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCc
Q 015289 265 PVHR----DDWEGLGHVSHIAK-DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLN 338 (409)
Q Consensus 265 P~~~----~d~~~~~~l~~~~~-~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~ 338 (409)
|++. +|++++++|++.++ +.+++||++||++++.++++++++.+++|++|+|++++| ++++++++++|+++|++
T Consensus 275 P~~~~~~~~d~~~~~~l~~~l~~~g~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~i~~~A~~~gi~ 354 (413)
T 1kcz_A 275 PMDVEDRQKQMEAMRDLRAELDGRGVDAELVADEWCNTVEDVKFFTDNKAGHMVQIKTPDLGGVNNIADAIMYCKANGMG 354 (413)
T ss_dssp SBCCSSHHHHHHHHHHHHHHHHHHTCCEEEEECTTCCSHHHHHHHHHTTCSSEEEECTGGGSSTHHHHHHHHHHHHTTCE
T ss_pred CCCCCCCcccHHHHHHHHHhhhcCCCCCcEEeCCCcCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCE
Confidence 9964 48999999975210 016899999999999999999999999999999999997 99999999999999999
Q ss_pred EEEcc-CCchHHHHHHHHHHHccCCCCceec
Q 015289 339 LMIGG-MVETRLAMGFAGHLSAGLGCFKFID 368 (409)
Q Consensus 339 ~~~~~-~~es~i~~~~~~hlaaa~~~~~~~e 368 (409)
+++|| ++||++++++++||+++++++.+.+
T Consensus 355 ~~~~~~~~es~i~~~a~~hlaaa~~~~~i~~ 385 (413)
T 1kcz_A 355 AYCGGTCNETNRSAEVTTNIGMACGARQVLA 385 (413)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHTCSEEEC
T ss_pred EEecCCCCCCHHHHHHHHHHHhcCCCCceee
Confidence 99998 7899999999999999998865443
|
| >1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1 PDB: 1kkr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-55 Score=445.31 Aligned_cols=307 Identities=17% Similarity=0.185 Sum_probs=257.2
Q ss_pred ceeeeeeEEEEEEEECCCceEEEEeccC---------CccCcccHHHHHHHHHH-HHHHHcCCCCCCHHHHHHHHHhhcC
Q 015289 69 SRLDQVENVAIRIELSNGCVGWGEAPVL---------PHVTAEDQQTAMVKASE-ACEVLKESPAMALGSVFGVVAGLLP 138 (409)
Q Consensus 69 ~~~~~~~~~iVrl~td~G~~G~GE~~~~---------~~~~~e~~~~~~~~~~~-~~~~l~g~~~~~~~~~~~~~~~~~~ 138 (409)
++++.++.++|+|+|++|++||||+.+. |.|++++... .+++ +.|.|+|+++.+++.+|+.+.....
T Consensus 45 ~~~~~~~~v~V~v~td~G~~G~GE~~~~~~sGa~~r~~~~~~~~~~~---~i~~~l~p~LiG~d~~~~~~i~~~l~~~~~ 121 (413)
T 1kko_A 45 SVRQAGECVSVQLILENGAVAVGDCAAVQYSGAGGRDPLFLAEHFIP---FLNDHIKPLLEGRDVDAFLPNARFFDKLRI 121 (413)
T ss_dssp SSEEEEEEEEEEEEETTSCEEEEEECCCTTTTSTTCCCCCCHHHHHH---HHHHHTHHHHTTCBCSCSHHHHHHHHHCEE
T ss_pred eEEEecceEEEEEEECCCCEEEEEecccccccccccCccccHHHHHH---HHHHHHHHHHcCCChHhHHHHHHHHHhhhc
Confidence 4567789999999999999999999875 5555554433 3343 7899999999999999998876432
Q ss_pred -CC-hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC------CCeeeeeeeecC---CCHHHHHHHHHHHHHcC-CCeEE
Q 015289 139 -GH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV------SNTITTDITIPI---VSPAEAAELASKYRKQG-FTTLK 206 (409)
Q Consensus 139 -g~-~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~------~~~i~~~~~i~~---~~~~~~~~~~~~~~~~G-f~~~K 206 (409)
+. ..+.+++||||||||+.||..|+|+|+||||. +++||+|.+.+. .+++++.+++.+++++| |+++|
T Consensus 122 ~~~~~~~~A~~aid~AlwDl~ak~~g~Pl~~lLGg~~~~~l~~~~vp~y~~~g~~~~~~~~~~~~~~~~~~~~G~~~~iK 201 (413)
T 1kko_A 122 DGNLLHTAVRYGLSQALLDATALASGRLKTEVVCDEWQLPCVPEAIPLFGQSGDDRYIAVDKMILKGVDVLPHALINNVE 201 (413)
T ss_dssp TTEECCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHTTCCCCCCCCCEECCCTTCTTHHHHHHHHTTCSEEEETTCCCCC
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCccccccccCCeEEEEecCccccCCHHHHHHHHHHHHhCCCccEEE
Confidence 21 12578999999999999999999999999984 457888876332 25667777777777899 99999
Q ss_pred EecCCChhH-------HHHHHHHHHhh-CCCcEEEEeCCC------CCCHHHHHHHHHHHHhCCCCC-ceeecCCC----
Q 015289 207 LKVGKNLKE-------DIEVLRAIRAV-HPDSSFILDANE------GYKPQEAVEVLEKLYEMGVTP-VLFEQPVH---- 267 (409)
Q Consensus 207 iKvG~~~~~-------d~~~l~avr~~-~~~~~l~vDaN~------~w~~~~A~~~~~~L~~~~l~~-~~iEeP~~---- 267 (409)
+|+|.+.+. |++++++||+. ++++.|++|+|+ +|++++|+++++.|+++++.+ .|||||++
T Consensus 202 ~KvG~~~~~~~~~l~~d~~~v~aiR~~~G~~~~L~vDan~~~~~~~~~~~~~A~~~~~~L~~~~~~~~l~iEqP~~~~~~ 281 (413)
T 1kko_A 202 EKLGFKGEKLREYVRWLSDRILSLRSSPRYHPTLHIDVYGTIGLIFDMDPVRCAEYIASLEKEAQGLPLYIEGPVDAGNK 281 (413)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHHHHCSSTTCCCEEEEECTTHHHHHTTTCHHHHHHHHHHTGGGGTTSCEEEECCCCCSSH
T ss_pred EecCCChhhHHHHHHHHHHHHHHHHHhhCCCCeEEEECCCccccccCCCHHHHHHHHHHHHhccCCcceEEECCcCCCCC
Confidence 999976544 45999999997 789999999999 999999999999999965432 29999999
Q ss_pred CCCHHHHHHhHHHhhc-cCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCC
Q 015289 268 RDDWEGLGHVSHIAKD-KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV 345 (409)
Q Consensus 268 ~~d~~~~~~l~~~~~~-~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~ 345 (409)
++|++++++|++.+.+ .+++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++||+.
T Consensus 282 ~~d~~~~~~l~~~l~~~g~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~ik~~~~GGitea~~i~~~A~~~gi~~~~~~~~ 361 (413)
T 1kko_A 282 PDQIRMLTAITKELTRLGSGVKIVADEWCNTYQDIVDFTDAGSCHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQGGTC 361 (413)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCEEEECTTCCSHHHHHHHHHTTCCSEEEECGGGGSSTHHHHHHHHHHHHHTCEEEECCCT
T ss_pred cccHHHHHHHHHhcccCCCCCcEEcCCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEecCCC
Confidence 6799999999752110 17899999999999999999999999999999999998 999999999999999999999996
Q ss_pred -chHHHHHHHHHHHccCCCCceeccccccccccCCCCCCeeeeCcEEecCCCCCcccccCC
Q 015289 346 -ETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHW 405 (409)
Q Consensus 346 -es~i~~~~~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~ 405 (409)
||+++.++++|||+++++ ..+|++||+|++.++
T Consensus 362 ~et~i~~aa~~hlaaa~~~---------------------------~~ip~kpG~g~~~~~ 395 (413)
T 1kko_A 362 NETEISARTCVHVALAARP---------------------------MRMLIKPGMGFDEGL 395 (413)
T ss_dssp TSCHHHHHHHHHHHHHHCC---------------------------SEEECCSCSSSHHHH
T ss_pred CCCHHHHHHHHHHHHcCCC---------------------------CcccCCCCCCCCccH
Confidence 999999999999998743 246889999987654
|
| >2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase, PSI, protein structure initiative; 1.42A {Synechococcus elongatus} PDB: 3h7v_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-54 Score=424.71 Aligned_cols=293 Identities=22% Similarity=0.244 Sum_probs=247.4
Q ss_pred EEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCCHHHH
Q 015289 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSV 129 (409)
Q Consensus 50 ~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~ 129 (409)
+++++++++|++.||+++.++++.++.++|||+||+|++||||+.+.+.++.|+.+.++..++.+.+.+ ++.+++.+
T Consensus 4 ~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~l~~~l---~~~~~~~~ 80 (332)
T 2ozt_A 4 RWQWRIYEEPLQEPLTTAQGVWRSRSGIYLRLEDEQGQVGYGEIAPLPGWGSETLNADIALCQQLPGHL---TPEIMATI 80 (332)
T ss_dssp EEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTSCEEEEEECCCTTSSSCCHHHHHHHHHHSCSEE---CHHHHTTS
T ss_pred EEEEEEEEeecCCCcEecCEEEEeeeEEEEEEEECCCCEEEEEecCCCCCCcccHHHHHHHHHHhhccC---CHHHHHHH
Confidence 789999999999999999999999999999999999999999999888888888776654333333322 23222222
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEec
Q 015289 130 FGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV 209 (409)
Q Consensus 130 ~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKv 209 (409)
++ .+..+++|||+||| +.|| |||..++ +.|... +.+++++.+.+++++++||+++|+|+
T Consensus 81 ~~---------~~~~a~~aid~Al~-l~gk---------lgg~~~~-~~y~~~-~~~~e~~~~~a~~~~~~G~~~~KiKv 139 (332)
T 2ozt_A 81 PE---------ALPAAQFGFATAWQ-SVGR---------LPYRVRP-WPICAL-LGSGQAALEQWQQSWQRGQTTFKWKV 139 (332)
T ss_dssp CT---------TCHHHHHHHHHHHH-HTTT---------CSCCCCC-CCBCEE-ECTGGGHHHHHHHHHHTTCCEEEEEC
T ss_pred HH---------HhHHHHHHHHHHHH-Hhcc---------cCCCCCC-cceEEe-cCChHHHHHHHHHHHHcCCcEEEEEe
Confidence 21 12457999999999 8888 4554334 555332 35788899999999999999999999
Q ss_pred CC-ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhC---CCCCceeecCCCCCCHHHHHHhHHHhhcc
Q 015289 210 GK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEM---GVTPVLFEQPVHRDDWEGLGHVSHIAKDK 284 (409)
Q Consensus 210 G~-~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~---~l~~~~iEeP~~~~d~~~~~~l~~~~~~~ 284 (409)
|. ++++|++++++||++ ++++.|++|+|++|++++|+++++.|+++ ++ .|||||++++|++++++|++ +
T Consensus 140 g~~~~~~d~~~v~avr~~~g~~~~L~vDaN~~~~~~~A~~~~~~l~~~~~~~i--~~iEqP~~~~d~~~~~~l~~----~ 213 (332)
T 2ozt_A 140 GVMSPEEEQAILKALLAALPPGAKLRLDANGSWDRATANRWFAWLDRHGNGKI--EYVEQPLPPDQWQALLSLAQ----T 213 (332)
T ss_dssp SSSCHHHHHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHHHHHHHHHHCCTTE--EEEECCSCTTCHHHHHHHHH----H
T ss_pred CCCChHHHHHHHHHHHHHcCCCCEEEEcccCCCCHHHHHHHHHHHHhhccCCc--ceeECCCCCCCHHHHHHHHH----h
Confidence 96 689999999999998 78999999999999999999999999998 76 59999999999999999975 5
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHc--CCcEEEccCCchHHHHHHHHHHHccC
Q 015289 285 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRAS--GLNLMIGGMVETRLAMGFAGHLSAGL 361 (409)
Q Consensus 285 ~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~--gi~~~~~~~~es~i~~~~~~hlaaa~ 361 (409)
+++||++||++++..+++++++.+++|++|+|++++| ++ +++++|+++ |+++++||++||++++++++||++++
T Consensus 214 ~~ipIa~dEs~~~~~~~~~~~~~~a~~~i~ik~~~~GGi~---~i~~~A~~~~~gi~~~~~~~~es~i~~aa~~hlaa~~ 290 (332)
T 2ozt_A 214 VTTAIALDESVVSAAEVQRWVDRGWPGFFVIKTALFGDPD---SLSLLLRRGLEPQRLVFSSALEGAIARTAIFHLLETW 290 (332)
T ss_dssp CSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHSCHH---HHHHHHHTTCCGGGEEEBCCSCCHHHHHHHHHHHHHH
T ss_pred CCCCEEeCCCCCCHHHHHHHHHhCCCCEEEEChhhhCCHH---HHHHHHHHhCCCCcEEEeCCcchHHHHHHHHHHHHhC
Confidence 7899999999999999999999999999999999997 86 778899999 99999999999999999999999999
Q ss_pred CCCceecccccccc
Q 015289 362 GCFKFIDLDTPLLL 375 (409)
Q Consensus 362 ~~~~~~e~~~p~~~ 375 (409)
+|...+.+++..++
T Consensus 291 ~~~~~~gl~t~~~~ 304 (332)
T 2ozt_A 291 QPCHALGFGVDRWR 304 (332)
T ss_dssp CCCSCBBCCCTTTC
T ss_pred CCCcCCcCCchhhc
Confidence 87655556654333
|
| >2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-51 Score=412.12 Aligned_cols=304 Identities=18% Similarity=0.248 Sum_probs=251.4
Q ss_pred eeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCC---------------ccCcccHHHHHH
Q 015289 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP---------------HVTAEDQQTAMV 109 (409)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~---------------~~~~e~~~~~~~ 109 (409)
+|||++|+++.+..+. + ++.++|+|+|++|++|||+++... .|.+++...+..
T Consensus 8 ~MkI~~i~~~~v~~s~--------g----~~~v~V~v~td~G~~G~G~~~~~~~tg~~ea~~~~d~~~~~~g~~~~~~~~ 75 (427)
T 2pa6_A 8 RFEIKDIVAREVIDSR--------G----NPTVEVEVITKGNGYGSAIVPSGASTGTHEALELRDKEKRFGGKGVLMAVE 75 (427)
T ss_dssp GGBEEEEEEEEEECTT--------S----CEEEEEEEEETTCCEEEEECCCCCSSCSSSCCCCCCCSSGGGGTCCHHHHH
T ss_pred CCEEEEEEEEEEEcCC--------C----CceEEEEEEECCCCeeeEecccccccCcceeEeecCCccccccccHHHHHH
Confidence 3899999999987432 2 468999999999999999764310 144455556666
Q ss_pred HHHH-HHHHHcCCCCCCHHHHHHHHHhhc----CCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeee--
Q 015289 110 KASE-ACEVLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDIT-- 181 (409)
Q Consensus 110 ~~~~-~~~~l~g~~~~~~~~~~~~~~~~~----~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~-- 181 (409)
.+++ +.|.|+|+++.+++.+|+.+.+.. .+.....|++||||||||+.||.+|+|||+||||. ++++|+|..
T Consensus 76 ~i~~~l~p~LiG~d~~~~~~i~~~l~~~~~~~~~~~~~~~A~~avd~AlwDl~ak~~g~Pl~~lLGg~~~~~vp~~~~~~ 155 (427)
T 2pa6_A 76 NVNSIIRPEILGYDARMQREIDTIMIELDGTPNKSRLGANAILAVSLAVAKAAAATAKIPLYKYLGGFNSYVMPVPMMNV 155 (427)
T ss_dssp HHHHTHHHHHTTCBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHCSCCCEECEECEEE
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCccccchHHHHHHHHHHHHHHHHHHhCCcHHHHhcCccccccccchhcc
Confidence 6664 889999999999999999887631 11222468999999999999999999999999997 457888742
Q ss_pred e-c---------C------CCHHHHHHHHHHHHHcCCCeEEE----ecCC-------------ChhHHHHHHHHHHhh--
Q 015289 182 I-P---------I------VSPAEAAELASKYRKQGFTTLKL----KVGK-------------NLKEDIEVLRAIRAV-- 226 (409)
Q Consensus 182 i-~---------~------~~~~~~~~~~~~~~~~Gf~~~Ki----KvG~-------------~~~~d~~~l~avr~~-- 226 (409)
+ + + ..++++.+++.++.++||+++|+ |+|. +++.|++++++||++
T Consensus 156 ~~gg~~~~~~l~~~~~~~~p~~~~~~~~a~~~~~~g~~~lK~~l~~K~G~~~~~vg~~gg~~~~~~~d~~~v~~vreav~ 235 (427)
T 2pa6_A 156 INGGKHAGNDLDLQEFMIMPVGATSISEAVRMGSEVYHVLKNVILEKYGKNAVNVGDEGGFAPPLKTSREALDLLTESVK 235 (427)
T ss_dssp EECSTTTSSSCSSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCTTSCCBCTTSCBCCSCCSHHHHHHHHHHHHH
T ss_pred ccccccccCCcCHHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcCCcCCCccchHHHHHHHHHHHH
Confidence 1 1 1 12256678888888999999998 7442 367899999999984
Q ss_pred --CC--CcEEEEeC-------CCCC-------CHHHHHHHHH-HHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCC
Q 015289 227 --HP--DSSFILDA-------NEGY-------KPQEAVEVLE-KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGV 287 (409)
Q Consensus 227 --~~--~~~l~vDa-------N~~w-------~~~~A~~~~~-~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~i 287 (409)
++ ++.|++|+ |++| +.++|++++. .++++++ .|||||++++|++++++|++ ++++
T Consensus 236 ~~G~~~~~~L~vDa~as~~~~n~~~~~~n~~~~~~~ai~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~i 309 (427)
T 2pa6_A 236 KAGYEDEVVFALDAAASEFYKDGYYYVEGKKLTREELLDYYKALVDEYPI--VSIEDPFHEEDFEGFAMITK----ELDI 309 (427)
T ss_dssp HHTCTTTCEEEEECCGGGGEETTEEEETTEEECHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHHHH----HSSS
T ss_pred HhCCCCCcEEEEEcchhccccCCceeecCCCCCHHHHHHHHHHHHhhCCC--cEEEcCCChhhHHHHHHHHh----hCCC
Confidence 66 89999999 6665 8999999975 8999986 59999999999999999975 5789
Q ss_pred eEEeCCC-CCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHHccCCCC
Q 015289 288 SVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGCF 364 (409)
Q Consensus 288 pIa~dEs-~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~-es~i~~~~~~hlaaa~~~~ 364 (409)
||++||+ ++++++++++++.+++|++|+|++++| ++++++++++|+++|++++++++. ||+++.++++|++++.+++
T Consensus 310 pIa~dE~~~~~~~~~~~~i~~~a~d~i~ik~~~~GGitea~~ia~lA~~~g~~~~~~h~~~es~i~~aa~l~~a~~~~~~ 389 (427)
T 2pa6_A 310 QIVGDDLFVTNVERLRKGIEMKAANALLLKVNQIGTLSEAVDAAQLAFRNGYGVVVSHRSGETEDTTIADLSVALNSGQI 389 (427)
T ss_dssp EEEESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCSHHHHHHHHHHHHTTTCEEEEECCSSCCSCCHHHHHHHHTTCSEE
T ss_pred eEEeCccccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEEeCCCCCChHHHHHHHHHHhCCCcc
Confidence 9999999 666999999999999999999999997 999999999999999999996655 9999999999999998876
Q ss_pred ce
Q 015289 365 KF 366 (409)
Q Consensus 365 ~~ 366 (409)
..
T Consensus 390 ~~ 391 (427)
T 2pa6_A 390 KT 391 (427)
T ss_dssp EC
T ss_pred cc
Confidence 43
|
| >2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics, protein structure initiative; 1.60A {Thermobifida fusca} PDB: 2qvh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-50 Score=396.30 Aligned_cols=282 Identities=27% Similarity=0.396 Sum_probs=227.5
Q ss_pred EEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCCHHHH
Q 015289 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSV 129 (409)
Q Consensus 50 ~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~ 129 (409)
+|+++++++||+.||+ ..+.++.++|+ |.+||||+.+.+.++.+ + ..
T Consensus 2 ~i~~~~~~~Pl~~pf~----~~~~r~~~lV~-----G~~G~GE~~p~~~~~~~--~--------~~-------------- 48 (327)
T 2opj_A 2 SLTGRAFAIPLRTRFR----GITVREGMLVR-----GAAGWGEFSPFAEYGPR--E--------CA-------------- 48 (327)
T ss_dssp CCSEEEEEEEEEEEET----TEEEEEEEEEE-----CSSCEEEECCCTTCCHH--H--------HH--------------
T ss_pred EEEEEEEEEeeccCce----eeeEEEEEEEE-----cCEEEEEecCCCCCCHH--H--------HH--------------
Confidence 5678999999999997 24568888884 99999999987765432 0 00
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEec
Q 015289 130 FGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV 209 (409)
Q Consensus 130 ~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKv 209 (409)
..+++|||||||| +| |+.+++||+|.+++..+++++.+.++ ++||+++|+|+
T Consensus 49 -------------~~~~aaid~Al~~-------~P-----g~~r~~v~~~~ti~~~~~e~~~~~~~---~~G~~~~KiKv 100 (327)
T 2opj_A 49 -------------RWWAACYEAAELG-------WP-----APVRDTVPVNATVPAVGPEEAARIVA---SSGCTTAKVKV 100 (327)
T ss_dssp -------------HHHHHHHHHHHTC-------CC-----CCSCSEEEBCEEECSCCHHHHHHHHH---HHCCSEEEEEC
T ss_pred -------------HHHHHHHHHHHhC-------CC-----cCCCCeeEEeEEeCCCCHHHHHHHHH---HCCCCEEEEEe
Confidence 1358999999974 56 66678999999999989988655443 58999999999
Q ss_pred CC---ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccC
Q 015289 210 GK---NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF 285 (409)
Q Consensus 210 G~---~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~ 285 (409)
|. ++++|++++++||++ +|++.|++|+|++|+.++|+++++.|+++++ .|||||++ +++++++|++ ++
T Consensus 101 g~~g~~~~~d~~~v~avR~~~G~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l--~~iEqP~~--~~~~~~~l~~----~~ 172 (327)
T 2opj_A 101 AERGQSEANDVARVEAVRDALGPRGRVRIDVNGAWDVDTAVRMIRLLDRFEL--EYVEQPCA--TVDELAEVRR----RV 172 (327)
T ss_dssp CC------CHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCE--EEEECCSS--SHHHHHHHHH----HC
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHhcCC--cEEeCCCC--CHHHHHHHHh----hC
Confidence 85 578999999999997 7999999999999999999999999999986 59999997 4889999874 67
Q ss_pred CCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCC
Q 015289 286 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCF 364 (409)
Q Consensus 286 ~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~ 364 (409)
++|||+||++++..++.++++.+++|++|+|++++| +++++++++ .+|+++++|||+||++++++++|++++++++
T Consensus 173 ~iPIa~dEs~~~~~~~~~~i~~~a~d~i~ik~~~~GGit~~~~ia~---~~gi~~~~~~~~es~ig~aa~~hlaaa~~~~ 249 (327)
T 2opj_A 173 SVPIAADESIRRAEDPLRVRDAEAADVVVLKVQPLGGVRAALRLAE---ECGLPVVVSSAVETSVGLAAGVALAAALPEL 249 (327)
T ss_dssp SSCEEC-----------CTTTTTCCSBEEECHHHHTSHHHHHHHHH---HTCSCEEEBCCSCCHHHHHHHHHHHHHSSCC
T ss_pred CCCEEcCCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHH---HcCCcEEEcCCCcCHHHHHHHHHHHHhCCCc
Confidence 899999999999999999999999999999999997 999998754 5699999999999999999999999999987
Q ss_pred ce-eccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 365 KF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 365 ~~-~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
.+ +++.+...+.+|++.+++.++||++.+| |+++|+|.|
T Consensus 250 ~~~~~l~~~~~~~~d~~~~~~~~~~G~l~vp-----gve~d~~~l 289 (327)
T 2opj_A 250 PYACGLATLRLLHADVCDDPLLPVHGVLPVR-----RVDVSEQRL 289 (327)
T ss_dssp SSCBBCCGGGGBSCCSBSSCCCCBTTEEECC-----CCCBCHHHH
T ss_pred ccccccCchhhhhhhcccCCCeeECCEEECC-----CcccCHHHH
Confidence 55 4554434456788878888999999998 689998865
|
| >2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-50 Score=408.77 Aligned_cols=300 Identities=20% Similarity=0.272 Sum_probs=252.6
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCc-----------------cCcccHHHHH
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPH-----------------VTAEDQQTAM 108 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~-----------------~~~e~~~~~~ 108 (409)
|||++|+.+.+. .+. .++.++|+|+|++|++| ||+.+.+. |.+++...+.
T Consensus 1 ~~I~~v~~~~v~--------~sr----g~~~v~V~v~td~G~~G-ge~~p~~~~~G~~ea~e~rd~~~~~y~g~~~~~~~ 67 (431)
T 2fym_A 1 SKIVKIIGREII--------DSR----GNPTVEAEVHLEGGFVG-MAAAPSGASTGSREALELRDGDKSRFLGKGVTKAV 67 (431)
T ss_dssp CBEEEEEEEEEE--------CTT----SCEEEEEEEEETTSCEE-EEECCCCCSSCSSSCCCCCCCCTTSGGGTCCHHHH
T ss_pred CeeEEEEEEEEE--------cCC----CCeeEEEEEEECCCCcc-ceecCcccccCcccceeccCCcccccccccHHHHH
Confidence 799999999873 122 23679999999999999 99987643 3333466666
Q ss_pred HHHHH-HHHHHcCCCCCCHHHHHHHHHhhcC----CChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCC-Ce----eee
Q 015289 109 VKASE-ACEVLKESPAMALGSVFGVVAGLLP----GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVS-NT----ITT 178 (409)
Q Consensus 109 ~~~~~-~~~~l~g~~~~~~~~~~~~~~~~~~----g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~-~~----i~~ 178 (409)
..+++ +.|.|+|+++.+++.+++.+.+... +...+.|++||||||||+.||.+|+|||+||||.. +. +|+
T Consensus 68 ~~i~~~l~p~LiG~d~~~~~~i~~~l~~~~g~~~~~~~g~~A~~avd~AlwD~~ak~~g~Pl~~lLGG~~~~~~~~~~pv 147 (431)
T 2fym_A 68 AAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPV 147 (431)
T ss_dssp HHHHTHHHHHHTTSBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHTTCTTCCCCCE
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHHHHHHHHhCCcHHHHhcCcccccccccccc
Confidence 66765 8899999999999999998876311 11224689999999999999999999999999963 34 777
Q ss_pred ee------------eecCCC----H--HHHHHHHHHHHHcCCCeEE---------EecCC------ChhHHHHHHHHHHh
Q 015289 179 DI------------TIPIVS----P--AEAAELASKYRKQGFTTLK---------LKVGK------NLKEDIEVLRAIRA 225 (409)
Q Consensus 179 ~~------------~i~~~~----~--~~~~~~~~~~~~~Gf~~~K---------iKvG~------~~~~d~~~l~avr~ 225 (409)
++ ++++.+ | +++.+++.++.++||+++| +|+|. +++.|+++|++||+
T Consensus 148 ~~~~~~~gg~~~~~~l~~~~~mi~p~~~~~~~~a~~~~~~g~~~lK~~l~~~g~~~kvG~~gg~~~~~~~d~~~l~~vre 227 (431)
T 2fym_A 148 PMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAE 227 (431)
T ss_dssp ECEEEEECGGGSSSSCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHTTCCCCBCTTSCBCCCCSSHHHHHHHHHH
T ss_pred eeEeeccCccccccccCcchhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCcccccCcccCCCCCccchHHHHHHHHH
Confidence 53 222223 4 6677888888899999999 99985 77889999999999
Q ss_pred h--------CCCcEEEEeC----------------C-CCCCHHHHHHHHHHHHh-CCCCCceeecCCCCCCHHHHHHhHH
Q 015289 226 V--------HPDSSFILDA----------------N-EGYKPQEAVEVLEKLYE-MGVTPVLFEQPVHRDDWEGLGHVSH 279 (409)
Q Consensus 226 ~--------~~~~~l~vDa----------------N-~~w~~~~A~~~~~~L~~-~~l~~~~iEeP~~~~d~~~~~~l~~ 279 (409)
+ ++++.|++|+ | ++|+.++|+++++.|.+ +++ .|||||++++|++++++|++
T Consensus 228 ai~~~g~~~G~dv~l~vDaaas~~~~~~~Y~~~~~n~~~~t~~~ai~~~~~L~~~~~i--~~iEePl~~~d~~~~~~l~~ 305 (431)
T 2fym_A 228 AVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPI--VSIEDGLDESDWDGFAYQTK 305 (431)
T ss_dssp HHHHTTCCBTTTBEEEEECCGGGGEETTEEEEGGGTTEEECHHHHHHHHHHHHHHSCE--EEEESCSCTTCHHHHHHHHH
T ss_pred HHHHhccCCCCccEEEEeechhhccccCceeeccCCCCCCCHHHHHHHHHHHHHhCCc--eEEECCCCcccHHHHHHHHH
Confidence 5 5889999999 9 99999999999999998 985 69999999999999999985
Q ss_pred HhhccC--CCeEEeCC-CCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCC-chHHHHHHH
Q 015289 280 IAKDKF--GVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFA 354 (409)
Q Consensus 280 ~~~~~~--~ipIa~dE-s~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~-es~i~~~~~ 354 (409)
++ .+||++|| +++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. ||+++.+++
T Consensus 306 ----~~~~~ipIa~dEl~~~~~~~~~~~i~~~a~d~i~ik~~~~GGite~~~i~~~A~~~g~~~~~~h~~get~~~~~a~ 381 (431)
T 2fym_A 306 ----VLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIAD 381 (431)
T ss_dssp ----HHTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECGGGTCSHHHHHHHHHHHHHTTCEEEEECCSSCCSCCHHHH
T ss_pred ----HhCCCCeEEeCCcccCCHHHHHHHHHhCCCCEEEECccccCCHHHHHHHHHHHHHCCCeEEEeCCCCCchHHHHHH
Confidence 45 79999999 9999999999999999999999999998 999999999999999999998888 899998888
Q ss_pred HHHHccCCCC
Q 015289 355 GHLSAGLGCF 364 (409)
Q Consensus 355 ~hlaaa~~~~ 364 (409)
+|++++.++.
T Consensus 382 la~a~~~~~i 391 (431)
T 2fym_A 382 LAVGTAAGQI 391 (431)
T ss_dssp HHHHTTCEEE
T ss_pred HHHhcCCCcc
Confidence 8888766543
|
| >1w6t_A Enolase; bacterial infection, surface protein, moonlighting protein, glycolysis, phosphopyruvate hydratase, lyase; HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP: c.1.11.1 d.54.1.1 PDB: 1iyx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-47 Score=390.70 Aligned_cols=299 Identities=18% Similarity=0.245 Sum_probs=247.8
Q ss_pred eEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCc-----------------cCcccHHHHHH
Q 015289 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPH-----------------VTAEDQQTAMV 109 (409)
Q Consensus 47 kI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~-----------------~~~e~~~~~~~ 109 (409)
.|.+|..+.+ -+|.|. +.++|+|+|++|++| ||+.+.+. |.++++..+..
T Consensus 13 ~i~~~~~r~i--------~dsrg~----~~v~V~V~td~G~~G-ge~~p~~~~tG~~ea~elrd~~~~~~~g~~v~~a~~ 79 (444)
T 1w6t_A 13 IITDVYAREV--------LDSRGN----PTLEVEVYTESGAFG-RGMVPSGASTGEHEAVELRDGDKSRYGGLGTQKAVD 79 (444)
T ss_dssp BEEEEEEEEE--------ECTTSC----EEEEEEEEETTCCEE-EEECCCC---CCSSCCCCCCCCTTSGGGTCCHHHHH
T ss_pred hcceeEEEEE--------EcCCCC----ceEEEEEEECCCCEe-eEecccccccccceeeeeccCcccccccccHHHHHH
Confidence 4788887775 345443 789999999999999 99987542 23334556666
Q ss_pred HHHH-HHHHHcCCCCCCHHHHHHHHHhhcC----CChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeee--
Q 015289 110 KASE-ACEVLKESPAMALGSVFGVVAGLLP----GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDIT-- 181 (409)
Q Consensus 110 ~~~~-~~~~l~g~~~~~~~~~~~~~~~~~~----g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~-- 181 (409)
.+++ +.|.|+|+++.+++.+|+.|.+... +...+.|++||||||||+.||.+|+|||+||||. ++++|+|++
T Consensus 80 ~i~~~l~p~LiG~d~~~~~~i~~~l~~~~g~~~~~~~g~~A~~avd~AlwD~~ak~~g~Pl~~lLGG~~~~~vp~~~~~~ 159 (444)
T 1w6t_A 80 NVNNIIAEAIIGYDVRDQQAIDRAMIALDGTPNKGKLGANAILGVSIAVARAAADYLEIPLYSYLGGFNTKVLPTPMMNI 159 (444)
T ss_dssp HHHHTHHHHHTTSBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHHHCTTCCEECEECEEE
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCccccchhHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCcccccccccce
Confidence 6664 8899999999999999998876311 1122468999999999999999999999999996 578998863
Q ss_pred e-cC---------------CCHHHHHHHHHHHHHcCCCeEE---------EecCC------ChhHHHHHHHHHHhh----
Q 015289 182 I-PI---------------VSPAEAAELASKYRKQGFTTLK---------LKVGK------NLKEDIEVLRAIRAV---- 226 (409)
Q Consensus 182 i-~~---------------~~~~~~~~~~~~~~~~Gf~~~K---------iKvG~------~~~~d~~~l~avr~~---- 226 (409)
+ +. ...++..+++.++.++||+++| +|+|. +++.|+++|++||++
T Consensus 160 ~~gg~~a~~~l~~qe~mi~p~~~~~~~~a~~~~~~g~~~lK~~lk~kg~~~kvG~~gg~~~~~~~d~~~l~avreav~~a 239 (444)
T 1w6t_A 160 INGGSHSDAPIAFQEFMILPVGAPTFKEALRYGAEIFHALKKILKSRGLETAVGDEGGFAPRFEGTEDGVETILAAIEAA 239 (444)
T ss_dssp EECGGGCSSSCCCSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHTTCCCCBCTTSCBCCCCSSHHHHHHHHHHHHHHT
T ss_pred eccccccccccchhHhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCchHhHHHHHHHHHHHHHHh
Confidence 1 10 0113456677778889999999 78884 678899999999985
Q ss_pred ----CCCcEEEEeC---------CCC-------------CCHHHHHHHHHHHHh-CCCCCceeecCCCCCCHHHHHHhHH
Q 015289 227 ----HPDSSFILDA---------NEG-------------YKPQEAVEVLEKLYE-MGVTPVLFEQPVHRDDWEGLGHVSH 279 (409)
Q Consensus 227 ----~~~~~l~vDa---------N~~-------------w~~~~A~~~~~~L~~-~~l~~~~iEeP~~~~d~~~~~~l~~ 279 (409)
++++.|++|+ |++ ||+++|+++++.|.+ +++ .|||||++++|++++++|++
T Consensus 240 gy~pG~dv~L~vDaaas~~~~~~n~~y~~~~n~~~~~~~~t~~eai~~~~~l~~~~~i--~~iEePl~~~d~~~~~~l~~ 317 (444)
T 1w6t_A 240 GYVPGKDVFLGFDCASSEFYDKERKVYDYTKFEGEGAAVRTSAEQIDYLEELVNKYPI--ITIEDGMDENDWDGWKALTE 317 (444)
T ss_dssp TCCBTTTBEEEEECCGGGGBC--CCCEETHHHHCTTCCEECHHHHHHHHHHHHHHSCE--EEEESCSCTTCHHHHHHHHH
T ss_pred ccCCCCCcEEEEEccchhcccccCCceeeccccCcccCCCCHHHHHHHHHHHHHhCCc--EEEECCCChhhHHHHHHHHH
Confidence 6789999999 888 889999999999864 885 69999999999999999985
Q ss_pred HhhccC--CCeEEeCCC-CCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCC-chHHHHHHH
Q 015289 280 IAKDKF--GVSVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFA 354 (409)
Q Consensus 280 ~~~~~~--~ipIa~dEs-~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~-es~i~~~~~ 354 (409)
++ .+||++||+ ++++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. ||+++.+++
T Consensus 318 ----~~~~~ipIa~dE~~~~~~~~~~~~i~~~a~d~i~ik~~~~GGitea~~ia~lA~~~g~~v~~~h~~get~i~~~a~ 393 (444)
T 1w6t_A 318 ----RLGKKVQLVGDDFFVTNTDYLARGIQEGAANSILIKVNQIGTLTETFEAIEMAKEAGYTAVVSHRSGETEDSTIAD 393 (444)
T ss_dssp ----HHTTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCSHHHHHHHHHHHHHTTCEEEEECCSSCCSCCHHHH
T ss_pred ----hhCCCCeEEeCCcccCCHHHHHHHHHcCCCCEEEEcccccCCHHHHHHHHHHHHHCCCeEEecCCCCCchHHHHHH
Confidence 45 799999998 999999999999999999999999998 999999999999999999997766 999998888
Q ss_pred HHHHccCCCC
Q 015289 355 GHLSAGLGCF 364 (409)
Q Consensus 355 ~hlaaa~~~~ 364 (409)
+|++++.++.
T Consensus 394 lava~~~~~i 403 (444)
T 1w6t_A 394 IAVATNAGQI 403 (444)
T ss_dssp HHHHTTCCEE
T ss_pred HHHhcCCCcc
Confidence 8888876654
|
| >2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei} SCOP: c.1.11.1 d.54.1.1 PDB: 2ptx_A 2pty_A* 2ptw_A 2pu0_A 2pu1_A* 1oep_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=380.62 Aligned_cols=300 Identities=16% Similarity=0.228 Sum_probs=242.1
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCC----------------ccCcccHHHHHH
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP----------------HVTAEDQQTAMV 109 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~----------------~~~~e~~~~~~~ 109 (409)
|||++|+++.+..|... +.++|+|+|++| +||||+++.. .|.++++..+..
T Consensus 4 m~I~~i~~~~v~~~~~~------------p~v~V~v~td~G-~G~ge~~sgastg~~ea~elrd~~~~~~~g~~v~~av~ 70 (432)
T 2ptz_A 4 MTIQKVHGREVLDSRGN------------PTVEVEVTTEKG-VFRSAVPSGASTGVYEACELRDGDKKRYVGKGCLQAVK 70 (432)
T ss_dssp TSCCEEEEEEEECTTSC------------EEEEEEEEETTE-EEEEECCBCSSCCTTSCCCCCCCCTTTGGGTCCHHHHH
T ss_pred CEEEEEEEEEEecCCCC------------cEEEEEEEeCCc-EEEEEEecccccCcceeeeeccCcccccccccHHHHHH
Confidence 89999999999866543 468999999999 9999986421 244455666666
Q ss_pred HHHH-HHHHHcCCCCCCHHHHHHHHHhhc--C--CChhhHHHHHHHHHHHHHHHhhcCCchHHHhC---CCCC---eeee
Q 015289 110 KASE-ACEVLKESPAMALGSVFGVVAGLL--P--GHQFASVRAAVEMALIDAVAKSVSMPLWRLFG---GVSN---TITT 178 (409)
Q Consensus 110 ~~~~-~~~~l~g~~~~~~~~~~~~~~~~~--~--g~~~~~a~said~AlwDl~gk~~g~Pl~~LLG---g~~~---~i~~ 178 (409)
.+++ +.|.|+|+++.+++.+|+.|.+.. . +...+.|++||||||||+.||.+|+|||+||| |..+ .+|+
T Consensus 71 ~v~~~iap~LiG~d~~~~~~i~~~m~~~~~~~~~~~~~~~Ai~aVd~AlwD~~ak~~g~Ply~lLG~~~G~~~~~~pvp~ 150 (432)
T 2ptz_A 71 NVNEVIGPALIGRDELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISKAAAAAKGVPLYRYLASLAGTKELRLPVPC 150 (432)
T ss_dssp HHHHTHHHHHTTCCTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHTCSCCEECEEE
T ss_pred HHHHHHHHHHCCCChhhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHHHHHHhCCcHHHHhccccCCCCcCCceeE
Confidence 6665 889999999999999999886631 1 22235689999999999999999999999999 8642 4565
Q ss_pred eeeecC-------CCHHHH---------HHHHHHHHHcCCCeEEEec----CC----------------ChhHHHHH-HH
Q 015289 179 DITIPI-------VSPAEA---------AELASKYRKQGFTTLKLKV----GK----------------NLKEDIEV-LR 221 (409)
Q Consensus 179 ~~~i~~-------~~~~~~---------~~~~~~~~~~Gf~~~KiKv----G~----------------~~~~d~~~-l~ 221 (409)
|.++.. .+++++ .+++.++.++||+++|+|+ |. +.++|+++ ++
T Consensus 151 ~~~i~gg~~a~~~~~~qe~mi~p~~~~~~~ea~~~~~eg~~~lK~~l~~k~G~~at~vgdegg~~p~~~~~~~~l~~i~~ 230 (432)
T 2ptz_A 151 FNVINGGKHAGNALPFQEFMIAPVKATSFSEALRMGSEVYHSLRGIIKKKYGQDAVNVGDEGGFAPPIKDINEPLPILME 230 (432)
T ss_dssp EEEEECSTTSSSSCCSCEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGCCBCTTSSBCCSCCCTTTHHHHHHH
T ss_pred EEEecCcccccCCCCHHHhcccCcccCCHHHHHHHHHHHHHHHHHHhHhhcCCCccccCCccCcCCCcccHHHHHHHHHH
Confidence 655421 123333 6778888999999999865 42 25789996 89
Q ss_pred HHHhhCC--CcEEEEeCCCCC---------------------CHHHHHHHH-HHHHhCCCCCceeecCCCCCCHHHHHHh
Q 015289 222 AIRAVHP--DSSFILDANEGY---------------------KPQEAVEVL-EKLYEMGVTPVLFEQPVHRDDWEGLGHV 277 (409)
Q Consensus 222 avr~~~~--~~~l~vDaN~~w---------------------~~~~A~~~~-~~L~~~~l~~~~iEeP~~~~d~~~~~~l 277 (409)
++|++++ ++.|++|+|++| +..++++++ +.+++|++ .|||||++++|++++++|
T Consensus 231 Air~~G~~g~v~l~vDan~~~~~~~~~~~y~~~~~~~~~~~~~a~~~~~~~~~~l~~y~i--~~iEdPl~~~D~~g~~~l 308 (432)
T 2ptz_A 231 AIEEAGHRGKFAICMDCAASETYDEKKQQYNLTFKSPEPTWVTAEQLRETYCKWAHDYPI--VSIEDPYDQDDFAGFAGI 308 (432)
T ss_dssp HHHHTTCTTSCEEEEECCGGGGEETTTTEEETTTTSSSCCEECHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHH
T ss_pred HHHHhCCcCCcEEEEECcccccccccCceeEeeccccccCCCCHHHHHHHHHHHHHhCCc--eEEECCCCcchHHHHHHH
Confidence 9997787 899999999885 445555544 67899985 699999999999999999
Q ss_pred HHHhhccC--CCeEEeCCC-CCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccC-CchHHHHH
Q 015289 278 SHIAKDKF--GVSVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGM-VETRLAMG 352 (409)
Q Consensus 278 ~~~~~~~~--~ipIa~dEs-~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~-~es~i~~~ 352 (409)
++ ++ .+||++||. ++++++++++++.+++|++|+|++++| ++++++++++|+++|++++++++ .||.++..
T Consensus 309 ~~----~~g~~ipI~gDe~~v~~~~~~~~~i~~~a~d~i~ik~~~~GGitea~~i~~lA~~~g~~v~~~h~~get~~~~~ 384 (432)
T 2ptz_A 309 TE----ALKGKTQIVGDDLTVTNTERIKMAIEKKACNSLLLKINQIGTISEAIASSKLCMENGWSVMVSHRSGETEDTYI 384 (432)
T ss_dssp HH----HTTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCSCCHH
T ss_pred HH----hcCCCCeEEecCcccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCeEEecCCCCccHHHHH
Confidence 85 45 799999996 799999999999999999999999998 99999999999999999988654 58888888
Q ss_pred HHHHHHccCCCC
Q 015289 353 FAGHLSAGLGCF 364 (409)
Q Consensus 353 ~~~hlaaa~~~~ 364 (409)
+.+|++++.+..
T Consensus 385 a~lava~~~~~i 396 (432)
T 2ptz_A 385 ADLVVALGSGQI 396 (432)
T ss_dssp HHHHHHHTCSEE
T ss_pred HHHHHHhCCCCC
Confidence 888887766644
|
| >3uj2_A Enolase 1; enzyme function initiative, EFI, lyase; 2.00A {Anaerostipes caccae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-44 Score=360.77 Aligned_cols=299 Identities=20% Similarity=0.245 Sum_probs=235.6
Q ss_pred eeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCC----------------ccCcccHHHHH
Q 015289 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP----------------HVTAEDQQTAM 108 (409)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~----------------~~~~e~~~~~~ 108 (409)
.|+|++|..+.+- .|.| .+++.|+|+|++|.+|+|++++.. .|.++++..++
T Consensus 25 ~m~I~~i~~r~i~--------dsrg----~ptvev~v~t~~G~~G~~~~psgastG~~ea~elrd~~~~~y~g~~v~~av 92 (449)
T 3uj2_A 25 YLEIEKVIGREII--------DSRG----NPTVEAEVYLAGGVTGRGTAPSGASTGEFEALELRDGDKGRFGGKGVTKAV 92 (449)
T ss_dssp TTBEEEEEEEEEE--------CTTS----CEEEEEEEEETTSCEEEEECCBC---CCSSCCCCCCCCTTSGGGTCCHHHH
T ss_pred ceEEEEEEEEEEE--------CCCC----CCeEEEEEEECCCCEEEEeccCCCcCcceeEEEeccCCcccccchhHHHHH
Confidence 3899999988752 3333 378999999999999999876421 35566666776
Q ss_pred HHHHH-HHHHHcCCCCCCHHHHHHHHHhhc----CCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCC-eeee--ee
Q 015289 109 VKASE-ACEVLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSN-TITT--DI 180 (409)
Q Consensus 109 ~~~~~-~~~~l~g~~~~~~~~~~~~~~~~~----~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~-~i~~--~~ 180 (409)
..+++ +.|.|+|+++.+++.+|+.|.+.. ++...+.|++||||||||+.||.+|+|||+||||..+ ++|+ |.
T Consensus 93 ~~v~~~iap~LiG~d~~~~e~i~~~m~~~dgt~~k~~lg~nAi~aVd~Alwda~ak~~g~PLy~lLGG~~~~~lpvp~~n 172 (449)
T 3uj2_A 93 QNINTEISEILSGMDASDIYAVDRAMIDADGTKDKSKFGANAVLAVSIACAKAAAAALGVPLYRFLGGLNANRLPVPMMN 172 (449)
T ss_dssp HHHHTHHHHHHTTSBTTCHHHHHHHHHHHHCSSSCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHGGGCCBCCEECEE
T ss_pred HHHHHHHHHHHccCCccCHHHHHHHHHHhcCcCCcchhhHHHHHHHHHHHHHHHHHHhCCCHHHHhCCCCCCceeeeeEE
Confidence 66654 789999999999999999997642 1222356899999999999999999999999999764 5555 54
Q ss_pred eecC--C-----CHHH---------HHHHHHHHHHcCCCeEEE--e-------cC------C---ChhHHHHHH-HHHHh
Q 015289 181 TIPI--V-----SPAE---------AAELASKYRKQGFTTLKL--K-------VG------K---NLKEDIEVL-RAIRA 225 (409)
Q Consensus 181 ~i~~--~-----~~~~---------~~~~~~~~~~~Gf~~~Ki--K-------vG------~---~~~~d~~~l-~avr~ 225 (409)
.+.. . +.++ ..+++.++.++||+++|+ | +| + +.+++++++ ++||+
T Consensus 173 ~inGG~ha~~~~~~qEfmi~P~ga~~~~ea~~~~~egy~~lK~~lk~~g~~t~vGdeggfap~~~~~~e~l~~i~~AIr~ 252 (449)
T 3uj2_A 173 ILNGGAHAANTVDVQEFMIMPVGAESFREALRQCTEVFHALAGLLKSKGLATSVGDEGGFAPDLASDEEAIEYILEAVKL 252 (449)
T ss_dssp EEECSTTSSSSCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHTTCCCCBCTTSCBCCCCSCHHHHHHHHHHHHHH
T ss_pred EecCcccCCCccchhhhhhCCcccccHHHHHHHHHHHHHHHHHHHhhcCCccccCCCCCcCCCccCHHHHHHHHHHHHHH
Confidence 4321 1 1121 356677888899999997 4 55 2 245677777 78898
Q ss_pred h----CCCcEEEEeCCC------------------CCCHHHHHHHHHH-HHhCCCCCceeecCCCCCCHHHHHHhHHHhh
Q 015289 226 V----HPDSSFILDANE------------------GYKPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAK 282 (409)
Q Consensus 226 ~----~~~~~l~vDaN~------------------~w~~~~A~~~~~~-L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~ 282 (409)
+ |+++.|++|+|+ .|+.++|++++++ +++|++ .|||||++++|++++++|++..
T Consensus 253 agy~~G~dv~l~vD~aase~~~~~~g~Y~l~~~~~~~t~~eai~~~~~lle~y~i--~~IEdPl~~dD~eg~~~L~~~~- 329 (449)
T 3uj2_A 253 AGYEPGRDFVLAMDAASSEWKGEKKGEYILPKCKRKFASEELVAHWKSLCERYPI--VSIEDGLDEEDWEGWQYMTREL- 329 (449)
T ss_dssp TTCCBTTTBEEEEECCGGGCBCSSTTEEECTTTCCEEEHHHHHHHHHHHHHHSCE--EEEESCSCTTCHHHHHHHHHHH-
T ss_pred hccccCCceEEEEEcchhhhccccCceeeccCcccccCHHHHHHHHHHHHHhcCc--eEEECCCCcchHHHHHHHHHHh-
Confidence 7 468999999984 3689999999986 899986 6999999999999999998621
Q ss_pred ccCCCeEEeCCCCC-CHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEE-ccCCchHHHHHHHHHHHc
Q 015289 283 DKFGVSVAADESCR-SLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMI-GGMVETRLAMGFAGHLSA 359 (409)
Q Consensus 283 ~~~~ipIa~dEs~~-~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~-~~~~es~i~~~~~~hlaa 359 (409)
...+||++||++. ++++++++++.+++|++|+|++++| ++++++++++|+++|+++++ |.+.||..++.+.++++.
T Consensus 330 -~~~ipI~gDE~~~tn~~~~~~~i~~~a~d~i~iKv~~iGGiTea~kia~lA~~~Gi~~~v~H~sgET~d~~iadLaVa~ 408 (449)
T 3uj2_A 330 -GDKIQLVGDDLFVTNTERLNKGIKERCGNSILIKLNQIGTVSETLEAIKMAHKAGYTAVVSHRSGETEDTTIADLAVAL 408 (449)
T ss_dssp -TTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCSHHHHHHHHHHHHHTTCEEEEECCSBCCSCCHHHHHHHHT
T ss_pred -CCCceEECCcceeCCHHHHHHHHHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCeEEEeCCCCCchHHHHHHHHHHh
Confidence 2279999999976 6999999999999999999999998 99999999999999999665 445678777655444444
|
| >3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-43 Score=352.17 Aligned_cols=300 Identities=20% Similarity=0.249 Sum_probs=236.0
Q ss_pred eeeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccC----------------CccCcccHHHH
Q 015289 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL----------------PHVTAEDQQTA 107 (409)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~----------------~~~~~e~~~~~ 107 (409)
|..+|++|..+.+ -+|.| .+++.|+|+|++|.+|+|.+++. +.|.++.+..+
T Consensus 1 ~~~~i~~~~~r~i--------~dsrg----~ptvev~v~t~~G~~G~~~~psgastG~~ea~elrd~~~~~y~gkgv~~a 68 (428)
T 3tqp_A 1 MTATITDINAHEI--------LDSRA----NPTLEVRVTLSSQAYGCAAVPSGASTGEREAVELRDNDLERYGGKGVLQA 68 (428)
T ss_dssp -CCCEEEEEEEEE--------ECTTS----CEEEEEEEEETTSCEEEEECCBCC---CCSCCCCCCCCTTSGGGTCCHHH
T ss_pred CCceEEEEEEEEE--------EcCCC----CCEEEEEEEECCCCEEEEeccccccCCcceeEeecCCCccccccccHHHH
Confidence 3457889988875 23433 38999999999999999976531 12445555666
Q ss_pred HHHHHH-HHHHHcCCCCCCHHHHHHHHHhhc----CCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCC-CC---Ceeee
Q 015289 108 MVKASE-ACEVLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG-VS---NTITT 178 (409)
Q Consensus 108 ~~~~~~-~~~~l~g~~~~~~~~~~~~~~~~~----~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg-~~---~~i~~ 178 (409)
...+++ +.|.|+|+++.+++.+|+.|.+.. .+...+.|++||||||||+.||.+|+|||+|||| .. ..+|+
T Consensus 69 v~~v~~~iap~LiG~d~~~~~~i~~~m~~~dgt~~k~~lg~nAi~aVd~Alwda~ak~~g~PLy~lLGG~~~~~~~pvp~ 148 (428)
T 3tqp_A 69 VENVNGPIRDALLGQDPRSQEEIDRIMIELDGTENKANLGANAILGVSLAVAYAAANNADLPLYRYLGGDGGPFSMPVPM 148 (428)
T ss_dssp HHHHHTHHHHHHTTCCTTCHHHHHHHHHHHHCCTTCTTTCHHHHHHHHHHHHHHHHHHTTCCHHHHHHTTTCCCCBCEEE
T ss_pred HHHHHHHHHHHhcCCCccCHHHHHHHHHHhcCcCCcCccchhHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCCceeeeEE
Confidence 666654 789999999999999999987642 1222356899999999999999999999999999 53 35777
Q ss_pred eeeecCC-------CHHH---------HHHHHHHHHHcCCCeEEEe---------cC------CChhHHHHH----HHHH
Q 015289 179 DITIPIV-------SPAE---------AAELASKYRKQGFTTLKLK---------VG------KNLKEDIEV----LRAI 223 (409)
Q Consensus 179 ~~~i~~~-------~~~~---------~~~~~~~~~~~Gf~~~KiK---------vG------~~~~~d~~~----l~av 223 (409)
|.++... +.++ ..+++.++.++||+++|+| +| ++++.|.+. +++|
T Consensus 149 ~~~inGG~ha~~~~~~qefmi~P~ga~~~~ea~~~~~egy~~lK~~l~~~g~~t~vGdegg~ap~~~~~~e~l~~i~~Ai 228 (428)
T 3tqp_A 149 MNIINGGAHATNNLDFQEFMIVPVGAPTFAEALRYGAEVFHALKKRLVSRGLMSAVGDEGGFAPDLPNNEAAFELILEAI 228 (428)
T ss_dssp EEEEECC----CCCSSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHTTCCCCBCTTSCBCCCCSSHHHHHHHHHHHH
T ss_pred EEEecCcccCCCccchhHHhhcCcchhhHHHHHHHHHHHHHhHhhhhcccccccccCCCCCcCCCcccHHHHHHHHHHHH
Confidence 7665221 1122 3566777888999999998 55 344455555 6899
Q ss_pred Hhh----CCCcEEEEeC--------------CCCCCHHHHHHHHHH-HHhCCCCCceeecCCCCCCHHHHHHhHHHhhcc
Q 015289 224 RAV----HPDSSFILDA--------------NEGYKPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDK 284 (409)
Q Consensus 224 r~~----~~~~~l~vDa--------------N~~w~~~~A~~~~~~-L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~ 284 (409)
|++ |+++.|++|+ |++||.++|+++++. +++|++ .|||||++++|++++++|++.. .
T Consensus 229 r~agy~~G~dv~l~vD~aase~~~~g~Y~l~~~~~t~~eai~~~~~ll~~y~i--~~IEdPl~~dD~eg~~~L~~~~--~ 304 (428)
T 3tqp_A 229 EDANYVPGKDIYLALDAASSELYQNGRYDFENNQLTSEEMIDRLTEWTKKYPV--ISIEDGLSENDWAGWKLLTERL--E 304 (428)
T ss_dssp HHTTCCBTTTBEEEEECCGGGSEETTEECCSSSCBCHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHHHHHH--T
T ss_pred HHhhcccCCceEEEEecchhhhccCCceeccccccCHHHHHHHHHHHHhhccc--ceEeCCCCcccHHHHHHHHHhc--C
Confidence 997 4689999999 589999999999998 899986 6999999999999999998631 2
Q ss_pred CCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEcc-CCchHHHHHHHHHHHc
Q 015289 285 FGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG-MVETRLAMGFAGHLSA 359 (409)
Q Consensus 285 ~~ipIa~dE-s~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~-~~es~i~~~~~~hlaa 359 (409)
..+||++|| +++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++++ +.||..++.+.++++.
T Consensus 305 ~pI~ivGDel~vt~~~~~~~~i~~~a~d~i~iKv~~iGGiTealkia~lA~~~G~~~~v~H~sGEted~~iadLaVa~ 382 (428)
T 3tqp_A 305 NKVQLVGDDIFVTNPDILEKGIKKNIANAILVKLNQIGTLTETLATVGLAKSNKYGVIISHRSGETEDTTIADLAVAT 382 (428)
T ss_dssp TTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCSCCHHHHHHHHT
T ss_pred CCcceeccccccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHcCCeEEEeCCCCCchHHHHHHHHHHc
Confidence 347888898 6889999999999999999999999998 9999999999999999976655 4577777655555554
|
| >3qn3_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, glycolysis, lyase; 2.13A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=355.80 Aligned_cols=295 Identities=17% Similarity=0.222 Sum_probs=236.2
Q ss_pred eEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccC---------------CccCcccHHHHHHHH
Q 015289 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL---------------PHVTAEDQQTAMVKA 111 (409)
Q Consensus 47 kI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~---------------~~~~~e~~~~~~~~~ 111 (409)
+|++|..+.+ -+|.| .+++.|+|+|++|.+|++.+++. +.|.++.+..+...+
T Consensus 6 ~i~~i~~r~i--------~dsrG----~ptvev~v~t~~g~~g~a~vpsgastg~~ea~elrd~~~~y~gkgv~~av~~v 73 (417)
T 3qn3_A 6 VIEDVRAYEV--------LDSRG----NPTVKAEVTLSDGSVGAAIVPSGASTGSKEALELRDNDERFGGKGVLKAVANV 73 (417)
T ss_dssp BEEEEEEEEE--------ECTTS----CEEEEEEEEETTCCEEEEECCCCBSSCSSSCBCCCCCSTGGGGTCCHHHHHHH
T ss_pred eeeEEEEEEE--------EcCCC----CceEEEEEEECCCCEEEEecCCCCccccceeeeecCCCccccCccHHHHHHHH
Confidence 6999988875 24444 48999999999999999876431 124455566777777
Q ss_pred HH-HHHHHcCCCCCCHHHHHHHHHhhc----CCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC-CCeeeeeee--e-
Q 015289 112 SE-ACEVLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDIT--I- 182 (409)
Q Consensus 112 ~~-~~~~l~g~~~~~~~~~~~~~~~~~----~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~-~~~i~~~~~--i- 182 (409)
++ +.|.|+|+++.+++.+|+.|.+.. ++...+.|++||||||||+.||.+|+|||+||||. ++.+|+|+. +
T Consensus 74 ~~~iap~LiG~d~~~~~~id~~m~~~dgt~~k~~lg~nAi~aVs~Al~da~ak~~g~PLy~lLGG~~~~~lPv~~~nvin 153 (417)
T 3qn3_A 74 NETIADEILGLDAFNQTQLDDTLRELDGTNNYSNLGANATLGVSMATARAAAAALGMPLYRYLGGANASILPVPMCNIIN 153 (417)
T ss_dssp HTHHHHHHTTSBTTCHHHHHHHHHHHHCSSSCTTTCHHHHHHHHHHHHHHHHHHTTCCHHHHHHGGGCCEECEEEEEEEE
T ss_pred HHHHHHHHCCCCccCHHHHHHHHHHhhccCCCCchhhhhHHHHHHHHHHHHHHHhCCcHHHHhCCCCCcceeeeeeeeec
Confidence 65 789999999999999999997642 22223568999999999999999999999999997 458898842 2
Q ss_pred -cC-----CCHHHH------HHHHHHHHHcC---CCeEEE---------ecCC---------ChhHHHHHH-HHHHhhC-
Q 015289 183 -PI-----VSPAEA------AELASKYRKQG---FTTLKL---------KVGK---------NLKEDIEVL-RAIRAVH- 227 (409)
Q Consensus 183 -~~-----~~~~~~------~~~~~~~~~~G---f~~~Ki---------KvG~---------~~~~d~~~l-~avr~~~- 227 (409)
+. .+.++. ++.++++++.| |+++|+ |+|. +.++|++++ +++|++|
T Consensus 154 GG~ha~~~~~~qe~mi~P~ga~~~~ea~~~G~evy~~lK~~l~~kg~~t~vGdegg~ap~~~~~~e~l~~i~~Air~aGy 233 (417)
T 3qn3_A 154 GGAHANNNVDFQEFMIMPFGFTSFKEALRSVCEIYAILKKELANSGHSTALGDEGGFAPNLANNTEPIDLLMTCIKKAGY 233 (417)
T ss_dssp CGGGSSSSCCCSEEEEEECSCSSHHHHHHHHHHHHHHHHHHHHHTTCCCCBCTTSCBCCCCSSSSHHHHHHHHHHHHTTC
T ss_pred CcccCCCcccHHHHhcCccchHHHHHHHHHhHHHHHHHHHHHHhcCcccccCCCCCcCCCcCCHHHHHHHHHHHHHHcCC
Confidence 11 112221 23344455566 888887 6662 357899998 8999996
Q ss_pred -CCcEEEEeCCCC--------------CCHHHHHHHHHH-HHhCCCCCceeecCCCCCCHHHHHHhHHHhhccC--CCeE
Q 015289 228 -PDSSFILDANEG--------------YKPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF--GVSV 289 (409)
Q Consensus 228 -~~~~l~vDaN~~--------------w~~~~A~~~~~~-L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~--~ipI 289 (409)
|++.|++|+|++ ||.++++++++. +++|++ .|||||++++|++++++|++ ++ .+||
T Consensus 234 ~~dv~l~vD~~ase~~~~g~y~l~~~~~t~~eai~~~~~ll~~y~i--~~IEdPl~~dD~e~~~~L~~----~~g~~ipI 307 (417)
T 3qn3_A 234 ENRVKIALDVASTEFFKDGKYHMEGKAFSSEALIERYVELCAKYPI--CSIEDGLAENDFEGWIKLTE----KLGNKIQL 307 (417)
T ss_dssp TTTEEEEEECCGGGGEETTEEEETTEEECHHHHHHHHHHHHHHSCE--EEEESSSCTTCHHHHHHHHH----HHTTTSEE
T ss_pred CCCceEEEECCchhhccCCeeecCCCccCHHHHHHHHHHHHhhcce--eEEecCCCcccHHHHHHHHH----hhCCCCce
Confidence 899999999986 579999999998 899986 69999999999999999986 34 5999
Q ss_pred EeCCCCCC-HHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHHc
Q 015289 290 AADESCRS-LDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSA 359 (409)
Q Consensus 290 a~dEs~~~-~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~-es~i~~~~~~hlaa 359 (409)
++||++.+ +++++++++.+++|++|+|++++| ++++++++++|+++|+++|++++. ||..++.+.++++.
T Consensus 308 ~gDE~~~tn~~~~~~~i~~~a~d~i~iKv~qiGGiTea~kia~lA~~~G~~v~vsh~sgEt~d~~iadlava~ 380 (417)
T 3qn3_A 308 VGDDLFVTNEDILREGIIKKMANAVLIKPNQIGTITQTMRTVRLAQRNNYKCVMSHRSGESEDAFIADFAVAL 380 (417)
T ss_dssp EESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCSHHHHHHHHHHHHHTTCEEEEECCSSCCSCCHHHHHHHHT
T ss_pred ecCCcccCCHHHHHHHHHhCCCCEEEecCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCCCchHHHHHHHHHHh
Confidence 99999887 999999999999999999999998 999999999999999999987754 77766555444444
|
| >2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=343.47 Aligned_cols=298 Identities=16% Similarity=0.196 Sum_probs=227.9
Q ss_pred EeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCC----------------ccCcccHHHHHHHH
Q 015289 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP----------------HVTAEDQQTAMVKA 111 (409)
Q Consensus 48 I~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~----------------~~~~e~~~~~~~~~ 111 (409)
|++|+.+.+ -.|.| .++++|+|+|++| +||||++... .|.++++..++..+
T Consensus 2 I~~v~~r~i--------~dsrg----~~tv~V~V~t~~G-~G~g~~psgastG~~ea~elrd~~~~~~~g~~v~~av~~v 68 (436)
T 2al1_A 2 VSKVYARSV--------YDSRG----NPTVEVELTTEKG-VFRSIVPSGASTGVHEALEMRDGDKSKWMGKGVLHAVKNV 68 (436)
T ss_dssp CCEEEEEEE--------ECTTS----CEEEEEEEEETTE-EEEEECCBCSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHH
T ss_pred eeEEEEEEE--------EcCCC----CcEEEEEEEECCc-eEEEeecccccCCcceeeeeccCccccccCccHHHHHHHH
Confidence 677777764 23333 3679999999999 9999975321 24445566676667
Q ss_pred HH-HHHHHc--CCCCCCHHHHHHHHHhh--c--CCChhhHHHHHHHHHHHHHHHhhcCCchHHHhC---CCC---Ceeee
Q 015289 112 SE-ACEVLK--ESPAMALGSVFGVVAGL--L--PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG---GVS---NTITT 178 (409)
Q Consensus 112 ~~-~~~~l~--g~~~~~~~~~~~~~~~~--~--~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLG---g~~---~~i~~ 178 (409)
++ +.|.|+ |+++.+++.+|+.|.+. . .+...+.|++||||||||+.||.+|+|||+||| |.. +.+|+
T Consensus 69 ~~~iap~Li~~G~d~~~~~~i~~~m~~~dgt~~~~~lg~~Ai~aVd~Al~Da~ak~~g~PLy~lLG~l~G~~~~~~~lpv 148 (436)
T 2al1_A 69 NDVIAPAFVKANIDVKDQKAVDDFLISLDGTANKSKLGANAILGVSLAASRAAAAEKNVPLYKHLADLSKSKTSPYVLPV 148 (436)
T ss_dssp HHTHHHHHHHHTCCTTCHHHHHHHHHHHHCSTTSTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTCCCTTEEECE
T ss_pred HHHHHHHHHHCCCChhhHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHhCCCHHHHhCcccCCCCcCceeeE
Confidence 65 889999 99999999999988653 1 122235689999999999999999999999999 864 46777
Q ss_pred ee--eecC-C------C---------HHHHHHHHHHHHHcCCCeEEE----e-------cC------CChhHHHHHHHHH
Q 015289 179 DI--TIPI-V------S---------PAEAAELASKYRKQGFTTLKL----K-------VG------KNLKEDIEVLRAI 223 (409)
Q Consensus 179 ~~--~i~~-~------~---------~~~~~~~~~~~~~~Gf~~~Ki----K-------vG------~~~~~d~~~l~av 223 (409)
++ .+.. . + ..+..+++.++.++||+++|. | +| ++++.+.++++.+
T Consensus 149 p~~n~inGg~ha~~~~~~qefmi~p~~a~~~~ea~~~~~e~~~~lK~~l~~k~G~~a~~vGdegg~~p~~~~~~~~l~~i 228 (436)
T 2al1_A 149 PFLNVLNGGSHAGGALALQEFMIAPTGAKTFAEALRIGSEVYHNLKSLTKKRYGASAGNVGDEGGVAPNIQTAEEALDLI 228 (436)
T ss_dssp EEEEEEECGGGSSSSCCSCEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGGSBCTTSCBCCCCSCHHHHHHHH
T ss_pred EEEEeecCccccCCccccccceecCcccccHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccCcCCCccCHHHHHHHH
Confidence 43 2210 0 0 011234455566677887773 2 43 2345566666655
Q ss_pred Hh----hCC--CcEEEEeC----------------------CCCCCHHHHHHHH-HHHHhCCCCCceeecCCCCCCHHHH
Q 015289 224 RA----VHP--DSSFILDA----------------------NEGYKPQEAVEVL-EKLYEMGVTPVLFEQPVHRDDWEGL 274 (409)
Q Consensus 224 r~----~~~--~~~l~vDa----------------------N~~w~~~~A~~~~-~~L~~~~l~~~~iEeP~~~~d~~~~ 274 (409)
++ +++ ++.|++|+ |+.|+.+++++++ +.+++|++ .|||||++++|++++
T Consensus 229 ~~ai~~~G~~g~v~l~vD~aase~~~n~~y~~~~~~~~~~~~~~~t~~eai~~~~~~l~~y~i--~~iEdPl~~dD~~g~ 306 (436)
T 2al1_A 229 VDAIKAAGHDGKVKIGLDCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPI--VSIEDPFAEDDWEAW 306 (436)
T ss_dssp HHHHHHHTCTTTCEEEEECCGGGGEETTEECTTTTCTTCCGGGCBCHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHH
T ss_pred HHHHHHcCCCcceEEEEechhhhhccCCceEEecccccccccccCCHHHHHHHHHHHHHhCCc--EEEECCCCCcCHHHH
Confidence 54 254 79999999 4556889998774 55788986 699999999999999
Q ss_pred HHhHHHhhccCCCeEEeCCCC-CCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEcc-CCchHHHH
Q 015289 275 GHVSHIAKDKFGVSVAADESC-RSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG-MVETRLAM 351 (409)
Q Consensus 275 ~~l~~~~~~~~~ipIa~dEs~-~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~-~~es~i~~ 351 (409)
++|++ ++.+||++||+. +++++++++++.+++|++|+|++++| ++++++++++|+++|+.+++++ +.||.++.
T Consensus 307 ~~l~~----~~~ipI~gDE~~vt~~~~~~~~i~~~a~d~i~ikv~qiGGitea~~ia~lA~~~g~~~~~sh~sgEt~~~~ 382 (436)
T 2al1_A 307 SHFFK----TAGIQIVADDLTVTNPKRIATAIEKKAADALLLKVNQIGTLSESIKAAQDSFAAGWGVMVSHRSGETEDTF 382 (436)
T ss_dssp HHHHT----TCCSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCSCCH
T ss_pred HHHHh----cCCCeEEECCcccCCHHHHHHHHHhCCCCEEEechhhcCCHHHHHHHHHHHHHcCCeEEEecCCCchHHHH
Confidence 99974 578999999995 69999999999999999999999998 9999999999999999998855 45899888
Q ss_pred HHHHHHHccCCCC
Q 015289 352 GFAGHLSAGLGCF 364 (409)
Q Consensus 352 ~~~~hlaaa~~~~ 364 (409)
.+.+|++++.+++
T Consensus 383 iA~lava~~~~~i 395 (436)
T 2al1_A 383 IADLVVGLRTGQI 395 (436)
T ss_dssp HHHHHHHTTCSEE
T ss_pred HHHHHHHhcCCcC
Confidence 8888888776654
|
| >2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity, glycolysis, , isothermal titration calorimetry, lyase; 1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A 1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-41 Score=340.27 Aligned_cols=298 Identities=17% Similarity=0.202 Sum_probs=227.8
Q ss_pred EeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCC----------------ccCcccHHHHHHHH
Q 015289 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP----------------HVTAEDQQTAMVKA 111 (409)
Q Consensus 48 I~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~----------------~~~~e~~~~~~~~~ 111 (409)
|++|+.+.+ -.|.| .++++|+|+|++|+ |||+++... .|.++++..++..+
T Consensus 2 I~~v~~r~i--------~dsrg----~~tv~V~V~t~~G~-G~~~~psgastG~~Ea~el~d~~~~~~~g~~v~~av~~v 68 (439)
T 2akz_A 2 IEKIWAREI--------LDSRG----NPTVEVDLYTAKGL-FRAAVPSGASTGIYEALELRDGDKQRYLGKGVLKAVDHI 68 (439)
T ss_dssp CCEEEEEEE--------ECTTS----CEEEEEEEEETTEE-EEEECCBCSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHH
T ss_pred eeEEEEEEE--------EcCCC----CceEEEEEEECCCc-eEeeccCCCceeEEEEeeccCCCccccCCCcHHHHHHHH
Confidence 677777764 23333 35799999999999 998765421 23445666677667
Q ss_pred HH-HHHHHc--CCCCCCHHHHHHHHHhh--c--CCChhhHHHHHHHHHHHHHHHhhcCCchHHHhC---CC-CCeeeeee
Q 015289 112 SE-ACEVLK--ESPAMALGSVFGVVAGL--L--PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG---GV-SNTITTDI 180 (409)
Q Consensus 112 ~~-~~~~l~--g~~~~~~~~~~~~~~~~--~--~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLG---g~-~~~i~~~~ 180 (409)
++ +.|.|+ |+++.+++.+++.|.+. . .+...+.|++||||||||+.||.+|+|||+||| |. ++++|+++
T Consensus 69 ~~~iap~Li~~G~d~~~~~~i~~~m~~~dgt~~~~~lg~nAi~aVs~Al~Da~ak~~g~PLy~lLG~~~G~~~~~lpvp~ 148 (439)
T 2akz_A 69 NSTIAPALISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAGAAERELPLYRHIAQLAGNSDLILPVPA 148 (439)
T ss_dssp HHTHHHHHHHHCCCTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTCCSCCBCEEE
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHhCCCHHHHhCcccCCCCceeEEEE
Confidence 65 889999 99999999999988653 1 122235789999999999999999999999999 86 45677753
Q ss_pred e--ecC-C------C---------HHHHHHHHHHHHHcCCCeEEE----e-------cC------CChhHHHHHHHHHHh
Q 015289 181 T--IPI-V------S---------PAEAAELASKYRKQGFTTLKL----K-------VG------KNLKEDIEVLRAIRA 225 (409)
Q Consensus 181 ~--i~~-~------~---------~~~~~~~~~~~~~~Gf~~~Ki----K-------vG------~~~~~d~~~l~avr~ 225 (409)
. +.. . + ..+..+++.++.++||+++|. | +| ++++.+.+.++.+|+
T Consensus 149 ~~~inGg~ha~~~~~~qefmi~p~~a~~~~ea~~~~~e~~~~lK~~lk~k~G~~~~~vGdegg~~p~~~~~~e~l~~i~~ 228 (439)
T 2akz_A 149 FNVINGGSHAGNKLAMQEFMILPVGAESFRDAMRLGAEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSEALELVKE 228 (439)
T ss_dssp EEEEECGGGSSSSCCSCEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGGCBCTTSCBCCSCCCHHHHHHHHHH
T ss_pred EEEecCccccccccccccceecCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccCcCCCcccHHHHHHHHHH
Confidence 2 210 0 0 011234455566677887773 3 33 234456666666665
Q ss_pred ----hCC--CcEEEEeC---------------------CCCCCHHHHHHHHH-HHHhCCCCCceeecCCCCCCHHHHHHh
Q 015289 226 ----VHP--DSSFILDA---------------------NEGYKPQEAVEVLE-KLYEMGVTPVLFEQPVHRDDWEGLGHV 277 (409)
Q Consensus 226 ----~~~--~~~l~vDa---------------------N~~w~~~~A~~~~~-~L~~~~l~~~~iEeP~~~~d~~~~~~l 277 (409)
+++ ++.|++|+ |+.|+.+++++++. .+++|++ .|||||++++|++++++|
T Consensus 229 ai~~~G~~g~v~l~vD~a~se~~~~g~y~l~~~~~~~~~~~~t~~e~~~~~~~ll~~y~i--~~IEdPl~~dD~~g~~~L 306 (439)
T 2akz_A 229 AIDKAGYTEKIVIGMDVAASEFYRDGKYDLDFKSPTDPSRYITGDQLGALYQDFVRDYPV--VSIEDPFDQDDWAAWSKF 306 (439)
T ss_dssp HHHHHTCTTTCEEEEECCGGGGEETTEECTTTTSSCCGGGCBCHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHH
T ss_pred HHHHcCCccceEEEEechHhhhccCCeeEEeccccccccccCCHHHHHHHHHHHHHhCCC--cEEECCCCcccHHHHHHH
Confidence 254 79999999 44578899877754 5688985 699999999999999999
Q ss_pred HHHhhccCCCeEEeCCC-CCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEE-ccCCchHHHHHHH
Q 015289 278 SHIAKDKFGVSVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMI-GGMVETRLAMGFA 354 (409)
Q Consensus 278 ~~~~~~~~~ipIa~dEs-~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~-~~~~es~i~~~~~ 354 (409)
++ ++.+||++||+ ++++++++++++.+++|++|+|++++| ++++++++++|+++|+.+++ |.+.||.++..+.
T Consensus 307 ~~----~~~ipI~gDE~~vt~~~~~~~~i~~~a~d~i~iKv~qiGGitea~~ia~lA~~~g~~~~~sh~~gEt~~~~iA~ 382 (439)
T 2akz_A 307 TA----NVGIQIVGDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTEAIQACKLAQENGWGVMVSHRSGETEDTFIAD 382 (439)
T ss_dssp HH----TCSSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCSCCHHHH
T ss_pred Hh----CCCCEEEeCCCccCCHHHHHHHHHhCCCCEEEechhhcCCHHHHHHHHHHHHHCCCeEEeecCCCccHHHHHHH
Confidence 85 57899999998 579999999999999999999999998 99999999999999999887 4556899888888
Q ss_pred HHHHccCCCC
Q 015289 355 GHLSAGLGCF 364 (409)
Q Consensus 355 ~hlaaa~~~~ 364 (409)
+|++++.+.+
T Consensus 383 lava~~~~~i 392 (439)
T 2akz_A 383 LVVGLCTGQI 392 (439)
T ss_dssp HHHHHTCSEE
T ss_pred HHHHhcCCcc
Confidence 8888776654
|
| >3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-25 Score=220.95 Aligned_cols=294 Identities=16% Similarity=0.206 Sum_probs=208.6
Q ss_pred eeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccC----------------CccCcccHHHHH
Q 015289 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL----------------PHVTAEDQQTAM 108 (409)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~----------------~~~~~e~~~~~~ 108 (409)
.|.|++|..+.+ -.|+| .+++-|+|.|++|.. .+-++.. ..|.+-.+..++
T Consensus 5 ~m~I~~i~ar~i--------ldsrG----nptvev~v~~~~g~~-ra~vPsgaStG~~Ea~elrd~d~~~y~Gkgv~kAv 71 (441)
T 3qtp_A 5 SMSIQKVHAREI--------LDSRG----NPTIEVEITTGKGMF-RSCVPSGASTGVHEAVELRDGDKKRYGGKGVLKAV 71 (441)
T ss_dssp TTBCCEEEEEEE--------ECTTS----CEEEEEEEEETTEEE-EEECCCCCSCCSSSCCCCCCCCTTSGGGTCCHHHH
T ss_pred CcEEEEEEEEEE--------ECCCC----CEEEEEEEEECCCcE-EEecccCCCCCcceeEeecCCCcccccCccHHHHH
Confidence 467999998875 24444 378899999999876 4433321 123333445666
Q ss_pred HHHHH-HHHHHcCCCCCCHHHHHHHHHhhc----CCChhhHHHHHHHHHHHHHHHhhcCCchHHHhC---CCC-Ceeee-
Q 015289 109 VKASE-ACEVLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG---GVS-NTITT- 178 (409)
Q Consensus 109 ~~~~~-~~~~l~g~~~~~~~~~~~~~~~~~----~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLG---g~~-~~i~~- 178 (409)
..+++ +.|.|+|.++.+.+.+.+.|.+.- .+...+.|+-|+++|++.+.|+..|+|||++|| |.. ..+|+
T Consensus 72 ~~vn~~iap~Lig~~~~dQ~~iD~~m~~lDgT~nks~lGaNail~vSlAvakAaA~~~~~PLy~~l~~l~g~~~~~lPvP 151 (441)
T 3qtp_A 72 ENVNTIIGPALLGKNVLNQAELDEMMIKLDGTNNKGKLGANAILGCSMSICRAAAAEKGLPLYKYLAELTGHKEMTMPVP 151 (441)
T ss_dssp HHHHHTHHHHHTTCBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTCCCCCBCEE
T ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCccCCCccchhhHHHHHHHHHHHhcCCcHHHHHHhhcCCCCceeccc
Confidence 77765 789999999999999988876531 122235689999999999999999999999997 432 33444
Q ss_pred -eeeec--------------------CCCHHHHH-------HHHHHHHHc--CCCeEEEecC------CCh---hHHHHH
Q 015289 179 -DITIP--------------------IVSPAEAA-------ELASKYRKQ--GFTTLKLKVG------KNL---KEDIEV 219 (409)
Q Consensus 179 -~~~i~--------------------~~~~~~~~-------~~~~~~~~~--Gf~~~KiKvG------~~~---~~d~~~ 219 (409)
...+. ..+..+.. ..+++.++. |.. -..+| +++ ++-++.
T Consensus 152 ~~nvinGG~ha~n~l~~QEfmi~P~ga~sf~ealr~~~evyh~Lk~~l~~k~g~~--~t~vgdEGgfap~~~~~~eaL~l 229 (441)
T 3qtp_A 152 CFNVINGGAHAGNALAMQEFMICPTGATNFHEALRMAAETYQCLKVVIKAKYGQD--ATNVGDEGGFAPNVSGAREALDL 229 (441)
T ss_dssp EEEEEECGGGCSSSCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGG--GGCBCTTSCBCCCCSSHHHHHHH
T ss_pred eEeeecCCccCCCccccceeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHhcCcc--cccccCCcccCCCCCCHHHHHHH
Confidence 22221 11223321 122222222 321 11233 233 444555
Q ss_pred H-HHHHhhC--CCcEEEEeCC---------C-----------------CCCHHHHHHHHHH-HHhCCCCCceeecCCCCC
Q 015289 220 L-RAIRAVH--PDSSFILDAN---------E-----------------GYKPQEAVEVLEK-LYEMGVTPVLFEQPVHRD 269 (409)
Q Consensus 220 l-~avr~~~--~~~~l~vDaN---------~-----------------~w~~~~A~~~~~~-L~~~~l~~~~iEeP~~~~ 269 (409)
+ ++|.+++ .++.|.+|+. + .+|.+|++++.+. +++|++ .|||||++++
T Consensus 230 l~~Ai~~aGy~~~i~i~lD~Aasefy~~~~g~Y~l~f~~~~~~~~~~~~~t~~elid~y~~lle~ypI--~~IEDPl~~d 307 (441)
T 3qtp_A 230 LVEAIAKAGYTGKIEIAMDCAASEFYNEETKKYDLGKKIPADKKDPSLVKDVDGLIAEYVDYGKHYPI--ASIEDPFAED 307 (441)
T ss_dssp HHHHHHHHTCTTTCEEEEECCGGGGEETTTTEEETTTTSCGGGCCGGGEECHHHHHHHHHHHHHHSCE--EEEESCSCTT
T ss_pred HHHHHHHcCCCceEEEccchhHHHhhhccCCeEEeecCCcccccccccccCHHHHHHHHHHHhhhcce--eeecCCCChH
Confidence 4 4666665 5789999873 1 2467899998777 688985 6999999999
Q ss_pred CHHHHHHhHHHhhccCC-CeEEeCCC-CCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEcc-CC
Q 015289 270 DWEGLGHVSHIAKDKFG-VSVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG-MV 345 (409)
Q Consensus 270 d~~~~~~l~~~~~~~~~-ipIa~dEs-~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~-~~ 345 (409)
||+++++|++ +++ +||++||. ++++++++++++.+++|++++|++++| ++++++++++|+++|+.+|+++ +.
T Consensus 308 D~eg~a~Lt~----~lg~i~IvGDEl~vTn~~~i~~~Ie~~a~n~IlIKvnqiGGITEalkaa~lA~~~G~~vmvsHrsg 383 (441)
T 3qtp_A 308 DWAAWNKFTV----EHGNFQIVGDDLLVTNPARVQMAMDKNACNSVLIKVNQIGTLTETFKTIKMAQEKGWGVMASHRSG 383 (441)
T ss_dssp CHHHHHHHHH----HTTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECGGGTCCHHHHHHHHHHHHHTTCEEEEECCSS
T ss_pred HHHHHHHHHH----hcCCceEEeccccccCHHHHHHHHHcCCCCEEEecccccccHHHHHHHHHHHHHcCCeEEEeCCCC
Confidence 9999999986 454 99999997 778999999999999999999999998 9999999999999999999866 46
Q ss_pred chHHHHHHHHHHHc
Q 015289 346 ETRLAMGFAGHLSA 359 (409)
Q Consensus 346 es~i~~~~~~hlaa 359 (409)
||..++.+.++++.
T Consensus 384 ETeDt~iAdLAVal 397 (441)
T 3qtp_A 384 ETEDTFIADLVVGL 397 (441)
T ss_dssp CCSCCHHHHHHHHT
T ss_pred CccHhHHHHHHHHh
Confidence 88776555444444
|
| >3otr_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel, TIM barrel; 2.75A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-23 Score=208.90 Aligned_cols=293 Identities=19% Similarity=0.246 Sum_probs=207.3
Q ss_pred eEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccC----------------CccCcccHHHHHHH
Q 015289 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL----------------PHVTAEDQQTAMVK 110 (409)
Q Consensus 47 kI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~----------------~~~~~e~~~~~~~~ 110 (409)
+|++|..+.+ -.|+| .+++-|+|.|++|.. .+-++.. ..|.+-.+..++..
T Consensus 3 ~I~~i~arei--------ldSrG----npTvEv~v~~~~G~~-ra~vPsGaStG~~Ea~elrD~d~~~y~Gkgv~kAv~~ 69 (452)
T 3otr_A 3 VIKDIVAREI--------LDSRG----NPTIEVDVSTEGGVF-RAAVPSGASTGIYEALELRDKDPKRYLGKGVLNAVEI 69 (452)
T ss_dssp CCCEEEEEEE--------ECTTS----CEEEEEEEEETTEEE-EEECCCCBSSCSSSCBCCCCCCTTSGGGTCCHHHHHH
T ss_pred cceEEEEEEE--------EcCCC----CEEEEEEEEECCccE-EEeccccCCCCcceEEeecCCCcccccCccHHHHHHH
Confidence 6888888775 24444 378899999998865 3333211 12333344566667
Q ss_pred HHH-HHHHHcCCCCCCHHHHHHHHH-hh---------cCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhC---CCC---
Q 015289 111 ASE-ACEVLKESPAMALGSVFGVVA-GL---------LPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG---GVS--- 173 (409)
Q Consensus 111 ~~~-~~~~l~g~~~~~~~~~~~~~~-~~---------~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLG---g~~--- 173 (409)
+++ +.|.|+|.++.+.+.+.+.|. +. ..+...+.|+-|+++|++.+.|...|+|||++|| |..
T Consensus 70 vn~~Iap~Lig~d~~dQ~~iD~~m~~~lDgT~n~~~~~ks~lGaNail~vSlAvakAaA~~~~~PLy~yi~~l~g~~~~~ 149 (452)
T 3otr_A 70 VRQEIKPALLGKDPCDQKGIDMLMVEQLDGTKNEWGYSKSKLGANAILGVSIACCRAGAASKGLPLYKYIATLAGKTIDK 149 (452)
T ss_dssp HHHTHHHHHTTCCTTCHHHHHHHHHHTTTCCEETTEECCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTCCSSS
T ss_pred HHHHHHHHHcCCChHhHHHHHHHHHHHhcCCCCcccccccccCcchhhHHHHHHHHHHHHhcCCcHHHHHHHhcCCCCcc
Confidence 765 789999999999999988887 32 1222235689999999999999999999999998 433
Q ss_pred Ceeeee--eeec--------------------CCCHHHHH-------HHHHHHHHc--CCCeEEEecC------CCh---
Q 015289 174 NTITTD--ITIP--------------------IVSPAEAA-------ELASKYRKQ--GFTTLKLKVG------KNL--- 213 (409)
Q Consensus 174 ~~i~~~--~~i~--------------------~~~~~~~~-------~~~~~~~~~--Gf~~~KiKvG------~~~--- 213 (409)
..+|+. ..+. ..+..+.. ..+++.++. |.. -..+| +++
T Consensus 150 ~~lPvP~~nvinGG~ha~n~l~~QEfmi~P~ga~sf~ealr~g~evyh~Lk~vl~~k~g~~--~t~vgDEGgfap~~~~~ 227 (452)
T 3otr_A 150 MVMPVPFFNVINGGEHAGNGLALQEFLIAPVGAPNIREAIRYGSETYHHLKNVIKNKYGLD--ATNVGDEGGFAPNVATA 227 (452)
T ss_dssp EEECEECEEEEECGGGCSSSCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGG--GGCBCTTSCBCCCCCSH
T ss_pred eecccceEEEecCcccCCCCCCcCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCc--ccccccccccCCCCCCH
Confidence 244542 2121 11233321 122333322 321 11233 333
Q ss_pred hHHHHHH-HHHHhhC--CCcEEEEeCCC------------------------CCCHHHHHHHHHH-HHhCCCCCceeecC
Q 015289 214 KEDIEVL-RAIRAVH--PDSSFILDANE------------------------GYKPQEAVEVLEK-LYEMGVTPVLFEQP 265 (409)
Q Consensus 214 ~~d~~~l-~avr~~~--~~~~l~vDaN~------------------------~w~~~~A~~~~~~-L~~~~l~~~~iEeP 265 (409)
++-++.| ++|.+++ .++.|.+|+-. .+|.+|++++.+. +++|++ .|||||
T Consensus 228 ~eaL~ll~~Ai~~aGy~~~i~i~lD~Aasefy~~~~g~Y~l~fk~~~~~~~~~~t~~Elid~y~~lle~ypI--v~IEDP 305 (452)
T 3otr_A 228 EEALNLLVEAIKAAGYEGKIKIAFDAAASEFYKQDEKKYDLDYKCKTKNASKHLTGEKLKEVYEGWLKKYPI--ISVEDP 305 (452)
T ss_dssp HHHHHHHHHHHHHHTCTTTSEEEEECCGGGGEETTTTEEETTTTCSSCCGGGEECHHHHHHHHHHHHHHSCE--EEEECC
T ss_pred HHHHHHHHHHHHHcCCCceEEEccccchHhheeccCCeEEeeccCCCCcccccccHHHHHHHHHHHHhhhCc--eEEecC
Confidence 3445554 4666675 57889888621 2478999999877 688985 699999
Q ss_pred CCCCCHHHHHHhHHHhhccCC--CeEEeCCC-CCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEE
Q 015289 266 VHRDDWEGLGHVSHIAKDKFG--VSVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMI 341 (409)
Q Consensus 266 ~~~~d~~~~~~l~~~~~~~~~--ipIa~dEs-~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~ 341 (409)
++++||+++++|++ +++ +||++||. ++++.++++.++.+++|++++|++++| ++++++++++|+++|+.+|+
T Consensus 306 l~~dD~eg~a~Lt~----~lg~~iqIvGDDl~vTn~~~i~~~Ie~~a~n~IlIKvnQIGgITEalka~~lA~~~G~~vmv 381 (452)
T 3otr_A 306 FDQDDFASFSAFTK----DVGEKTQVIGDDILVTNILRIEKALKDKACNCLLLKVNQIGSVTEAIEACLLAQKSGWGVQV 381 (452)
T ss_dssp SCTTCHHHHHHHHH----HHTTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CChhhHHHHHHHHH----hhCCCeEEEeCccccCCHHHHHHHHhcCCCCEEEeeccccccHHHHHHHHHHHHHcCCeEEE
Confidence 99999999999986 344 99999997 788999999999999999999999998 99999999999999999999
Q ss_pred cc-CCchHHHHHHHHHHHccCC
Q 015289 342 GG-MVETRLAMGFAGHLSAGLG 362 (409)
Q Consensus 342 ~~-~~es~i~~~~~~hlaaa~~ 362 (409)
++ +.||.-.+ .+|||.++.
T Consensus 382 shrSGETeD~~--iAdLaVgl~ 401 (452)
T 3otr_A 382 SHRSGETEDSF--IADLVVGLR 401 (452)
T ss_dssp ECCSSCCSCCH--HHHHHHHTT
T ss_pred eCCCCCCchhH--HHHHHHHcC
Confidence 77 45776554 456666553
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=5.5e-06 Score=81.11 Aligned_cols=121 Identities=18% Similarity=0.285 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHcCCCeEEEecCC---------------------Chh----HHHHHHHHHHhh-CCCc--EEEEeCC---
Q 015289 189 EAAELASKYRKQGFTTLKLKVGK---------------------NLK----EDIEVLRAIRAV-HPDS--SFILDAN--- 237 (409)
Q Consensus 189 ~~~~~~~~~~~~Gf~~~KiKvG~---------------------~~~----~d~~~l~avr~~-~~~~--~l~vDaN--- 237 (409)
+..+.++.+++.||..++|+.+. +++ --.+.+++||++ +++. .+++.++
T Consensus 153 ~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~~ 232 (349)
T 3hgj_A 153 AFVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDWG 232 (349)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCS
T ss_pred HHHHHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEecccccc
Confidence 34566677788999999999762 122 236788999997 7775 4555665
Q ss_pred -CCCCHHHHHHHHHHHHhCCCCCceeecCC------------CCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHH
Q 015289 238 -EGYKPQEAVEVLEKLYEMGVTPVLFEQPV------------HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 304 (409)
Q Consensus 238 -~~w~~~~A~~~~~~L~~~~l~~~~iEeP~------------~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~ 304 (409)
++|+.+++.++++.|++.++. ||+-.. +..+++..+++++ .+++||.+...+.+++++.++
T Consensus 233 ~~g~~~~~~~~la~~L~~~Gvd--~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~----~~~iPVi~~Ggi~t~e~a~~~ 306 (349)
T 3hgj_A 233 EGGWSLEDTLAFARRLKELGVD--LLDCSSGGVVLRVRIPLAPGFQVPFADAVRK----RVGLRTGAVGLITTPEQAETL 306 (349)
T ss_dssp TTSCCHHHHHHHHHHHHHTTCC--EEEEECCCSCSSSCCCCCTTTTHHHHHHHHH----HHCCEEEECSSCCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC--EEEEecCCcCcccccCCCccccHHHHHHHHH----HcCceEEEECCCCCHHHHHHH
Confidence 389999999999999999975 888652 1134555555543 568999999999999999999
Q ss_pred HHcCCCCEEEe
Q 015289 305 VKGNLADVINI 315 (409)
Q Consensus 305 i~~~a~div~~ 315 (409)
++.|.+|.|.+
T Consensus 307 l~~G~aD~V~i 317 (349)
T 3hgj_A 307 LQAGSADLVLL 317 (349)
T ss_dssp HHTTSCSEEEE
T ss_pred HHCCCceEEEe
Confidence 99999999875
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.9e-05 Score=76.90 Aligned_cols=120 Identities=17% Similarity=0.229 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHcCCCeEEEecCC---------------------Ch----hHHHHHHHHHHhhCCCc--EEEEeC----C
Q 015289 189 EAAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAVHPDS--SFILDA----N 237 (409)
Q Consensus 189 ~~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~d~~~l~avr~~~~~~--~l~vDa----N 237 (409)
++++.++.+++.||..++|+.+. .+ +.-.+.+++||++. +. .+++.. +
T Consensus 145 ~~~~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v-~~pv~vris~~~~~~ 223 (338)
T 1z41_A 145 EFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVW-DGPLFVRVSASDYTD 223 (338)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC-CSCEEEEEECCCCST
T ss_pred HHHHHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHc-CCcEEEEecCcccCC
Confidence 45666777788999999999862 11 22377899999975 44 344444 4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCceee--------c--CCCC-CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHH
Q 015289 238 EGYKPQEAVEVLEKLYEMGVTPVLFE--------Q--PVHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVK 306 (409)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iE--------e--P~~~-~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~ 306 (409)
++|+.+++.++++.|++.++. ||+ + |..+ .+++..+++++ .+++||.+...+.+.+++.++++
T Consensus 224 ~g~~~~~~~~~a~~l~~~Gvd--~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~----~~~iPVi~~Ggi~s~~~a~~~l~ 297 (338)
T 1z41_A 224 KGLDIADHIGFAKWMKEQGVD--LIDCSSGALVHADINVFPGYQVSFAEKIRE----QADMATGAVGMITDGSMAEEILQ 297 (338)
T ss_dssp TSCCHHHHHHHHHHHHHTTCC--EEEEECCCSSCCCCCCCTTTTHHHHHHHHH----HHCCEEEECSSCCSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEEecCccccCCCCCCccchHHHHHHHHH----HCCCCEEEECCCCCHHHHHHHHH
Confidence 589999999999999999975 777 2 3333 34555566654 56899999999999999999999
Q ss_pred cCCCCEEEe
Q 015289 307 GNLADVINI 315 (409)
Q Consensus 307 ~~a~div~~ 315 (409)
.|.+|.|.+
T Consensus 298 ~G~aD~V~i 306 (338)
T 1z41_A 298 NGRADLIFI 306 (338)
T ss_dssp TTSCSEEEE
T ss_pred cCCceEEee
Confidence 998999876
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=1.5e-05 Score=84.62 Aligned_cols=122 Identities=17% Similarity=0.213 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHcCCCeEEEecCC---------------------Ch----hHHHHHHHHHHhh-CCCcEE--EEeC---
Q 015289 188 AEAAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDSSF--ILDA--- 236 (409)
Q Consensus 188 ~~~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~d~~~l~avr~~-~~~~~l--~vDa--- 236 (409)
+++++.++.+++.||..++++.+. ++ +.-.+.+++||++ ++++.+ ++.+
T Consensus 141 ~~~~~aA~~a~~aGfd~veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~ 220 (671)
T 1ps9_A 141 DNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDL 220 (671)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEECcccc
Confidence 345666777888999999998752 12 2247789999997 888765 3433
Q ss_pred -CCCCCHHHHHHHHHHHHhCCCCCceee-------cCCC--------CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHH
Q 015289 237 -NEGYKPQEAVEVLEKLYEMGVTPVLFE-------QPVH--------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD 300 (409)
Q Consensus 237 -N~~w~~~~A~~~~~~L~~~~l~~~~iE-------eP~~--------~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~ 300 (409)
+++|+.+++.++++.|++.++. ||+ .+.+ ...++..+++ ++.+++||++...+.++++
T Consensus 221 ~~~g~~~~~~~~~a~~l~~~g~d--~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~~~~iPvi~~Ggi~~~~~ 294 (671)
T 1ps9_A 221 VEDGGTFAETVELAQAIEAAGAT--IINTGIGWHEARIPTIATPVPRGAFSWVTRKL----KGHVSLPLVTTNRINDPQV 294 (671)
T ss_dssp STTCCCHHHHHHHHHHHHHHTCS--EEEEEECBTTCSSCSSSTTSCTTTTHHHHHHH----TTSCSSCEEECSSCCSHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcCCC--EEEcCCCccccccccccccCCcchHHHHHHHH----HHhcCceEEEeCCCCCHHH
Confidence 4589999999999999999875 884 3332 1223434444 4578999999999999999
Q ss_pred HHHHHHcCCCCEEEe
Q 015289 301 VKKIVKGNLADVINI 315 (409)
Q Consensus 301 ~~~~i~~~a~div~~ 315 (409)
+.++++.|.+|.|.+
T Consensus 295 a~~~l~~g~aD~V~~ 309 (671)
T 1ps9_A 295 ADDILSRGDADMVSM 309 (671)
T ss_dssp HHHHHHTTSCSEEEE
T ss_pred HHHHHHcCCCCEEEe
Confidence 999999999999865
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=98.12 E-value=3e-05 Score=76.32 Aligned_cols=121 Identities=13% Similarity=0.219 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHcCCCeEEEecCC---------------------Ch----hHHHHHHHHHHhh-CCC-cEEEEeCC---
Q 015289 188 AEAAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPD-SSFILDAN--- 237 (409)
Q Consensus 188 ~~~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~d~~~l~avr~~-~~~-~~l~vDaN--- 237 (409)
++.++.++.+++.||..|+|+.+. ++ +.-.+.+++||++ +++ +.+++-++
T Consensus 161 ~~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vrls~~~~~ 240 (364)
T 1vyr_A 161 NDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTF 240 (364)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCB
T ss_pred HHHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEEEcccccc
Confidence 455677777888999999998752 11 2346778999997 555 33434443
Q ss_pred -----CCCCHHHHHHHHHHHHhCCCCCceeecCCC------CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHH
Q 015289 238 -----EGYKPQEAVEVLEKLYEMGVTPVLFEQPVH------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVK 306 (409)
Q Consensus 238 -----~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~------~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~ 306 (409)
+.++.+++.++++.|++.++. ||+-... ..+++..++++ +.+++||++...+ +++++.++++
T Consensus 241 ~~~~~~~~~~~~~~~~a~~l~~~G~d--~i~v~~~~~~~~~~~~~~~~~~v~----~~~~iPvi~~Ggi-t~~~a~~~l~ 313 (364)
T 1vyr_A 241 QNVDNGPNEEADALYLIEELAKRGIA--YLHMSETDLAGGKPYSEAFRQKVR----ERFHGVIIGAGAY-TAEKAEDLIG 313 (364)
T ss_dssp TTBCCCTTHHHHHHHHHHHHHHTTCS--EEEEECCBTTBCCCCCHHHHHHHH----HHCCSEEEEESSC-CHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCC--EEEEecCcccCCCcccHHHHHHHH----HHCCCCEEEECCc-CHHHHHHHHH
Confidence 355788999999999999975 8887652 23455455554 3678999999999 8999999999
Q ss_pred cCCCCEEEe
Q 015289 307 GNLADVINI 315 (409)
Q Consensus 307 ~~a~div~~ 315 (409)
.+.+|.|.+
T Consensus 314 ~g~aD~V~~ 322 (364)
T 1vyr_A 314 KGLIDAVAF 322 (364)
T ss_dssp TTSCSEEEE
T ss_pred CCCccEEEE
Confidence 999999865
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=1.4e-05 Score=78.98 Aligned_cols=120 Identities=13% Similarity=0.160 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHcCCCeEEEecCC---------------------Ch----hHHHHHHHHHHhh-CCCcEEEEeCC----
Q 015289 188 AEAAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDSSFILDAN---- 237 (409)
Q Consensus 188 ~~~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~d~~~l~avr~~-~~~~~l~vDaN---- 237 (409)
+++++.++.+++.||..|+|+.+. ++ +.-.+.+++||++ +++ .+.++.+
T Consensus 167 ~~f~~AA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~-~V~vrls~~~~ 245 (376)
T 1icp_A 167 NEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSD-RVGIRISPFAH 245 (376)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGG-GEEEEECTTCC
T ss_pred HHHHHHHHHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCC-ceEEEeccccc
Confidence 456677788888999999999752 12 2246788999997 665 5555554
Q ss_pred -----CCCCHHHHHHHHHHHHhCCCCCceeecCCCC--------CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHH
Q 015289 238 -----EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR--------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 304 (409)
Q Consensus 238 -----~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~--------~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~ 304 (409)
..++.+++.++++.|+++++. |||-.... .+++..++++ +.+++||++...+ +.+++.++
T Consensus 246 ~~g~~~~~~~~~~~~la~~le~~Gvd--~i~v~~~~~~~~~~~~~~~~~~~~vr----~~~~iPvi~~G~i-~~~~a~~~ 318 (376)
T 1icp_A 246 YNEAGDTNPTALGLYMVESLNKYDLA--YCHVVEPRMKTAWEKIECTESLVPMR----KAYKGTFIVAGGY-DREDGNRA 318 (376)
T ss_dssp TTTCCCSCHHHHHHHHHHHHGGGCCS--EEEEECCSCCC------CCCCSHHHH----HHCCSCEEEESSC-CHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCC--EEEEcCCcccCCCCccccHHHHHHHH----HHcCCCEEEeCCC-CHHHHHHH
Confidence 245678899999999999975 88875431 1222234443 4678999999999 89999999
Q ss_pred HHcCCCCEEEe
Q 015289 305 VKGNLADVINI 315 (409)
Q Consensus 305 i~~~a~div~~ 315 (409)
++.+.+|.|.+
T Consensus 319 l~~g~aD~V~~ 329 (376)
T 1icp_A 319 LIEDRADLVAY 329 (376)
T ss_dssp HHTTSCSEEEE
T ss_pred HHCCCCcEEee
Confidence 99999999865
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=2.1e-05 Score=77.75 Aligned_cols=119 Identities=8% Similarity=0.103 Sum_probs=89.0
Q ss_pred HHHHHHHHHH-HcCCCeEEEecCC-----------------------Chh----HHHHHHHHHHhh-CCC-cEEEEeCC-
Q 015289 189 EAAELASKYR-KQGFTTLKLKVGK-----------------------NLK----EDIEVLRAIRAV-HPD-SSFILDAN- 237 (409)
Q Consensus 189 ~~~~~~~~~~-~~Gf~~~KiKvG~-----------------------~~~----~d~~~l~avr~~-~~~-~~l~vDaN- 237 (409)
++++.++.++ +.||..|+|+.+. +++ .-.+.+++||++ +++ +.+++.++
T Consensus 175 ~f~~AA~~a~~~aGfDgVEih~a~GYLl~QFlsp~~N~R~~D~yGG~slenR~r~~~eiv~aVr~avg~~~v~vRis~~~ 254 (379)
T 3aty_A 175 LFVEGAKNAIFKAGFDGVEIHGANGYLLDAFFRESSNKRQSGPYAGTTIDTRCQLIYDVTKSVCDAVGSDRVGLRISPLN 254 (379)
T ss_dssp HHHHHHHHHHHTSCCSEEEEEECTTSHHHHHHSTTTCCCCSSTTCTTSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTC
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCchHHhhccCCCCCccccCCCCccChhhhHHHHHHHHHHHHHhcCCCeEEEEECccc
Confidence 3456667778 8999999998752 222 235678999997 655 45555543
Q ss_pred ------CCCCHHHHHHHHHHHHhCCCCCceeecCCCC-----CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHH
Q 015289 238 ------EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR-----DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVK 306 (409)
Q Consensus 238 ------~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~-----~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~ 306 (409)
++|+.+++.++++.|+++++. |||.+... ...+ .++++ +.+++||++.+.+ +++++.++++
T Consensus 255 ~~~~~~~~~~~~~~~~la~~l~~~Gvd--~i~v~~~~~~~~~~~~~-~~~ir----~~~~iPvi~~G~i-t~~~a~~~l~ 326 (379)
T 3aty_A 255 GVHGMIDSNPEALTKHLCKKIEPLSLA--YLHYLRGDMVNQQIGDV-VAWVR----GSYSGVKISNLRY-DFEEADQQIR 326 (379)
T ss_dssp CGGGCCCSCHHHHHHHHHHHHGGGCCS--EEEEECSCTTSCCCCCH-HHHHH----TTCCSCEEEESSC-CHHHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHHHHHHHhCCC--EEEEcCCCcCCCCccHH-HHHHH----HHCCCcEEEECCC-CHHHHHHHHH
Confidence 478899999999999999975 99887631 1113 45554 4678999999999 8999999999
Q ss_pred cCCCCEEEe
Q 015289 307 GNLADVINI 315 (409)
Q Consensus 307 ~~a~div~~ 315 (409)
.+.+|.|.+
T Consensus 327 ~g~aD~V~i 335 (379)
T 3aty_A 327 EGKVDAVAF 335 (379)
T ss_dssp TTSCSEEEE
T ss_pred cCCCeEEEe
Confidence 999999865
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=6.5e-05 Score=73.20 Aligned_cols=119 Identities=14% Similarity=0.231 Sum_probs=87.9
Q ss_pred HHHHHHHHHHcCCCeEEEecC---------------------CCh----hHHHHHHHHHHhh-CCCcEE--EEeCC----
Q 015289 190 AAELASKYRKQGFTTLKLKVG---------------------KNL----KEDIEVLRAIRAV-HPDSSF--ILDAN---- 237 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG---------------------~~~----~~d~~~l~avr~~-~~~~~l--~vDaN---- 237 (409)
.++.++.+++.||..|.|..+ .++ +--.+.+++||++ ++++.+ ++-++
T Consensus 145 f~~AA~~a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRls~~~~~~ 224 (343)
T 3kru_A 145 FGEAAKRANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADDYME 224 (343)
T ss_dssp HHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCCSST
T ss_pred HHHHHhhccccCCceEEEecccchhHHHhhcccccccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEeechhhhc
Confidence 455567777889999999943 112 2236789999997 677544 44443
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCceeecC----------CC-CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHH
Q 015289 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQP----------VH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVK 306 (409)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iEeP----------~~-~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~ 306 (409)
++|+.+++.++++.|++. +. ||+-. .. ..+++..++++ +..++||.+...+.+++++.++++
T Consensus 225 ~g~~~~~~~~~a~~l~~~-vd--~i~vs~g~~~~~~~~~~~~~~~~~~~~ir----~~~~iPVi~~Ggi~t~e~Ae~~l~ 297 (343)
T 3kru_A 225 GGINIDMMVEYINMIKDK-VD--LIDVSSGGLLNVDINLYPGYQVKYAETIK----KRCNIKTSAVGLITTQELAEEILS 297 (343)
T ss_dssp TSCCHHHHHHHHHHHTTT-CS--EEEEECCCSSCCCCCCCTTTTHHHHHHHH----HHHTCEEEEESSCCCHHHHHHHHH
T ss_pred cCccHHHHHHHHHHhhcc-cc--EEeccCCceEeeeecccCceeehHHHHHH----HhcCcccceeeeeeHHHHHHHHHh
Confidence 478999999999999998 75 88763 11 22444445554 356899999999999999999999
Q ss_pred cCCCCEEEe
Q 015289 307 GNLADVINI 315 (409)
Q Consensus 307 ~~a~div~~ 315 (409)
.|.+|.|.+
T Consensus 298 ~G~aD~V~i 306 (343)
T 3kru_A 298 NERADLVAL 306 (343)
T ss_dssp TTSCSEEEE
T ss_pred chhhHHHHH
Confidence 999999865
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=3.8e-05 Score=75.54 Aligned_cols=120 Identities=17% Similarity=0.189 Sum_probs=88.4
Q ss_pred HHHHHHHHHHcCCCeEEEecCC---------------------Chh----HHHHHHHHHHhh-CCCc--EEEEeCCC---
Q 015289 190 AAELASKYRKQGFTTLKLKVGK---------------------NLK----EDIEVLRAIRAV-HPDS--SFILDANE--- 238 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~~----~d~~~l~avr~~-~~~~--~l~vDaN~--- 238 (409)
..+.++.+++.||..++|+.+. +++ --++.+++||++ +++. .+++.++.
T Consensus 160 f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRis~~~~~~ 239 (363)
T 3l5l_A 160 FVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYDG 239 (363)
T ss_dssp HHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEECSSS
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEecchhcCC
Confidence 4556677778899999999751 122 236788999997 6775 44444432
Q ss_pred -C-CCHHHHHHHHHHHHhCCCCCceeecCC-----------CC-CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHH
Q 015289 239 -G-YKPQEAVEVLEKLYEMGVTPVLFEQPV-----------HR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 304 (409)
Q Consensus 239 -~-w~~~~A~~~~~~L~~~~l~~~~iEeP~-----------~~-~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~ 304 (409)
+ |+.+++.++++.|++.++. ||+-.. .+ .+++..+++++ ..++||.+...+.+++++.++
T Consensus 240 ~G~~~~~~~~~la~~L~~~Gvd--~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~----~~~iPVi~~GgI~s~e~a~~~ 313 (363)
T 3l5l_A 240 RDEQTLEESIELARRFKAGGLD--LLSVSVGFTIPDTNIPWGPAFMGPIAERVRR----EAKLPVTSAWGFGTPQLAEAA 313 (363)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCC--EEEEEECCCSSCCCCCCCTTTTHHHHHHHHH----HHTCCEEECSSTTSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC--EEEEecCccccccccCCCcchhHHHHHHHHH----HcCCcEEEeCCCCCHHHHHHH
Confidence 3 8899999999999999975 887432 11 24444455543 568999999999999999999
Q ss_pred HHcCCCCEEEe
Q 015289 305 VKGNLADVINI 315 (409)
Q Consensus 305 i~~~a~div~~ 315 (409)
++.|.+|.|.+
T Consensus 314 l~~G~aD~V~i 324 (363)
T 3l5l_A 314 LQANQLDLVSV 324 (363)
T ss_dssp HHTTSCSEEEC
T ss_pred HHCCCccEEEe
Confidence 99998999864
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00042 Score=68.10 Aligned_cols=121 Identities=12% Similarity=0.106 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHcCCCeEEEecCC---------------------Ch----hHHHHHHHHHHhh-CCC-cEEEEeCC---
Q 015289 188 AEAAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPD-SSFILDAN--- 237 (409)
Q Consensus 188 ~~~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~d~~~l~avr~~-~~~-~~l~vDaN--- 237 (409)
++.++.++.+++.||..|+|+.+. .+ +.-.+.+++||++ +++ +.+++-++
T Consensus 161 ~~f~~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vris~~~~~ 240 (365)
T 2gou_A 161 ADYRQAALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTL 240 (365)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCT
T ss_pred HHHHHHHHHHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEEEcccccc
Confidence 345666777788999999998752 11 2345778999997 655 33333432
Q ss_pred ----CCCCHHHHHHHHHHHHhCCCCCceeecCCC------CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHc
Q 015289 238 ----EGYKPQEAVEVLEKLYEMGVTPVLFEQPVH------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 307 (409)
Q Consensus 238 ----~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~------~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~ 307 (409)
++++.+++.++++.|++.++. ||+-... ...++..++++ +.+++||.+...+ +++++.++++.
T Consensus 241 ~~~~~~~~~~~~~~~a~~l~~~G~d--~i~v~~~~~~~~~~~~~~~~~~i~----~~~~iPvi~~Ggi-~~~~a~~~l~~ 313 (365)
T 2gou_A 241 NGTVDADPILTYTAAAALLNKHRIV--YLHIAEVDWDDAPDTPVSFKRALR----EAYQGVLIYAGRY-NAEKAEQAIND 313 (365)
T ss_dssp TSCCCSSHHHHHHHHHHHHHHTTCS--EEEEECCBTTBCCCCCHHHHHHHH----HHCCSEEEEESSC-CHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCC--EEEEeCCCcCCCCCccHHHHHHHH----HHCCCcEEEeCCC-CHHHHHHHHHC
Confidence 456889999999999999975 7875432 12344344554 4678999999988 89999999999
Q ss_pred CCCCEEEe
Q 015289 308 NLADVINI 315 (409)
Q Consensus 308 ~a~div~~ 315 (409)
+.+|.|.+
T Consensus 314 g~aD~V~i 321 (365)
T 2gou_A 314 GLADMIGF 321 (365)
T ss_dssp TSCSEEEC
T ss_pred CCcceehh
Confidence 99999865
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00042 Score=68.34 Aligned_cols=121 Identities=13% Similarity=0.166 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHcCCCeEEEecCC---------------------Ch----hHHHHHHHHHHhh-CCC-cEEEEeCC---
Q 015289 188 AEAAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPD-SSFILDAN--- 237 (409)
Q Consensus 188 ~~~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~d~~~l~avr~~-~~~-~~l~vDaN--- 237 (409)
+++++.++.+++.||..|+|+.+. .+ +.-.+.+++||++ +++ +.+++-++
T Consensus 166 ~~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~vrls~~~~~ 245 (377)
T 2r14_A 166 EDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLEL 245 (377)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCC
T ss_pred HHHHHHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCCcEEEEecccccc
Confidence 455666777788999999998752 12 2246778999997 655 34444332
Q ss_pred ----CCCCHHHHHHHHHHHHhCCCCCceeecCCC------C-CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHH
Q 015289 238 ----EGYKPQEAVEVLEKLYEMGVTPVLFEQPVH------R-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVK 306 (409)
Q Consensus 238 ----~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~------~-~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~ 306 (409)
.+|+.+++.++++.|++.++. ||+-... + .+++..++++ +..++||++...+ +++++.++++
T Consensus 246 ~~~~~~~~~~~~~~la~~le~~Gvd--~i~v~~~~~~~~~~~~~~~~~~~ik----~~~~iPvi~~Ggi-~~~~a~~~l~ 318 (377)
T 2r14_A 246 FGLTDDEPEAMAFYLAGELDRRGLA--YLHFNEPDWIGGDITYPEGFREQMR----QRFKGGLIYCGNY-DAGRAQARLD 318 (377)
T ss_dssp TTCCCSCHHHHHHHHHHHHHHTTCS--EEEEECCC------CCCTTHHHHHH----HHCCSEEEEESSC-CHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCC--EEEEeCCcccCCCCcchHHHHHHHH----HHCCCCEEEECCC-CHHHHHHHHH
Confidence 357889999999999999975 7775321 1 1333345554 3678999999888 6999999999
Q ss_pred cCCCCEEEe
Q 015289 307 GNLADVINI 315 (409)
Q Consensus 307 ~~a~div~~ 315 (409)
.+.+|.|.+
T Consensus 319 ~g~aD~V~i 327 (377)
T 2r14_A 319 DNTADAVAF 327 (377)
T ss_dssp TTSCSEEEE
T ss_pred CCCceEEee
Confidence 999999865
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00057 Score=66.99 Aligned_cols=119 Identities=15% Similarity=0.144 Sum_probs=83.3
Q ss_pred HHHHHHHHHHcCCCeEEEecCC---------------------Ch----hHHHHHHHHHHhh-CCC-cEEEEeCCCC---
Q 015289 190 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPD-SSFILDANEG--- 239 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~d~~~l~avr~~-~~~-~~l~vDaN~~--- 239 (409)
+++.++.+++.||..|+|+.+. ++ +--.+.+++||++ +++ +.+++-++..
T Consensus 155 f~~AA~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~vg~~~v~vRls~~~~~~g 234 (362)
T 4ab4_A 155 YRSGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRADAHD 234 (362)
T ss_dssp HHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCSSS
T ss_pred HHHHHHHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhcCCCceEEEeeccccccc
Confidence 4556677788999999999762 12 2336788999997 655 3444444321
Q ss_pred ----CCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 240 ----YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 240 ----w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
++.+++.++++.|++.++. ||+-.......+..++++ +..++||.+...+ +++++.++++.+.+|.|.+
T Consensus 235 ~~~~~~~~~~~~la~~l~~~Gvd--~i~v~~~~~~~~~~~~ik----~~~~iPvi~~Ggi-t~e~a~~~l~~g~aD~V~i 307 (362)
T 4ab4_A 235 MGDADRAETFTYVARELGKRGIA--FICSREREADDSIGPLIK----EAFGGPYIVNERF-DKASANAALASGKADAVAF 307 (362)
T ss_dssp CCCTTHHHHHHHHHHHHHHTTCS--EEEEECCCCTTCCHHHHH----HHHCSCEEEESSC-CHHHHHHHHHTTSCSEEEE
T ss_pred cCCCCcHHHHHHHHHHHHHhCCC--EEEECCCCCCHHHHHHHH----HHCCCCEEEeCCC-CHHHHHHHHHcCCccEEEE
Confidence 2367889999999999975 888654321111234444 3567899888788 9999999999999999865
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00054 Score=67.11 Aligned_cols=120 Identities=15% Similarity=0.122 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHcCCCeEEEecCC---------------------Ch----hHHHHHHHHHHhh-CCC-cEEEEeCCC---
Q 015289 189 EAAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPD-SSFILDANE--- 238 (409)
Q Consensus 189 ~~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~d~~~l~avr~~-~~~-~~l~vDaN~--- 238 (409)
++++.++.+++.||..|+|+.+. ++ +--++.+++||++ +++ +.+++-++.
T Consensus 162 ~f~~AA~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr~~vg~~~v~vRls~~~~~~ 241 (361)
T 3gka_A 162 AFRRGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGDAH 241 (361)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCCSS
T ss_pred HHHHHHHHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHHHHcCCCeEEEecccccccC
Confidence 44666777788999999999762 11 2346789999997 665 444554432
Q ss_pred ----CCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 015289 239 ----GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 314 (409)
Q Consensus 239 ----~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~ 314 (409)
.++.+++.++++.|++.++. ||+-.......+..++++ +..++||.+...+ +++++.++++.+.+|.|.
T Consensus 242 g~~~~~~~~~~~~la~~l~~~Gvd--~i~v~~~~~~~~~~~~ik----~~~~iPvi~~Ggi-t~e~a~~~l~~G~aD~V~ 314 (361)
T 3gka_A 242 TMGDSDPAATFGHVARELGRRRIA--FLFARESFGGDAIGQQLK----AAFGGPFIVNENF-TLDSAQAALDAGQADAVA 314 (361)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCS--EEEEECCCSTTCCHHHHH----HHHCSCEEEESSC-CHHHHHHHHHTTSCSEEE
T ss_pred CCCCCCcHHHHHHHHHHHHHcCCC--EEEECCCCCCHHHHHHHH----HHcCCCEEEeCCC-CHHHHHHHHHcCCccEEE
Confidence 23467889999999999975 888655432112234444 3567899888888 999999999999999986
Q ss_pred e
Q 015289 315 I 315 (409)
Q Consensus 315 ~ 315 (409)
+
T Consensus 315 i 315 (361)
T 3gka_A 315 W 315 (361)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0016 Score=63.28 Aligned_cols=121 Identities=17% Similarity=0.190 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHcCCCeEEEecCC---------------------ChhH----HHHHHHHHHhhC-CCcEEEEeCC----C
Q 015289 189 EAAELASKYRKQGFTTLKLKVGK---------------------NLKE----DIEVLRAIRAVH-PDSSFILDAN----E 238 (409)
Q Consensus 189 ~~~~~~~~~~~~Gf~~~KiKvG~---------------------~~~~----d~~~l~avr~~~-~~~~l~vDaN----~ 238 (409)
+.++.++.+++.||..+.|+.+. +++. -.+.+++||++. --+.+++-.+ +
T Consensus 145 ~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v~~pv~vRls~~~~~~~ 224 (340)
T 3gr7_A 145 AFQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVWDGPLFVRISASDYHPD 224 (340)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEESCCCSTT
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhcCCceEEEeccccccCC
Confidence 34556677778899999999762 1222 367889999975 2245566654 4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCceeecC--------C--C-CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHc
Q 015289 239 GYKPQEAVEVLEKLYEMGVTPVLFEQP--------V--H-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 307 (409)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~iEeP--------~--~-~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~ 307 (409)
+|+.++..++++.|++.++. ||+-- . . ..+++-.++++ +..++||...-.+.+++++.++++.
T Consensus 225 g~~~~~~~~la~~L~~~Gvd--~i~vs~g~~~~~~~~~~~~~~~~~~~~ik----~~~~iPVi~~GgI~s~e~a~~~L~~ 298 (340)
T 3gr7_A 225 GLTAKDYVPYAKRMKEQGVD--LVDVSSGAIVPARMNVYPGYQVPFAELIR----READIPTGAVGLITSGWQAEEILQN 298 (340)
T ss_dssp SCCGGGHHHHHHHHHHTTCC--EEEEECCCSSCCCCCCCTTTTHHHHHHHH----HHTTCCEEEESSCCCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCC--EEEEecCCccCCCCCCCccccHHHHHHHH----HHcCCcEEeeCCCCCHHHHHHHHHC
Confidence 78999999999999999875 66531 1 1 12444445554 3578999999999999999999999
Q ss_pred CCCCEEEe
Q 015289 308 NLADVINI 315 (409)
Q Consensus 308 ~a~div~~ 315 (409)
|.+|.|.+
T Consensus 299 G~aD~V~i 306 (340)
T 3gr7_A 299 GRADLVFL 306 (340)
T ss_dssp TSCSEEEE
T ss_pred CCeeEEEe
Confidence 98999865
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0013 Score=65.40 Aligned_cols=124 Identities=12% Similarity=0.137 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHcCCCeEEEecCC---------------------Ch----hHHHHHHHHHHhh-CCCcEEEEeCC----
Q 015289 188 AEAAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDSSFILDAN---- 237 (409)
Q Consensus 188 ~~~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~d~~~l~avr~~-~~~~~l~vDaN---- 237 (409)
+++++.++.+++.||..|.|+.+. ++ +--.+.+++||++ +++ .+.+..+
T Consensus 171 ~~f~~AA~~a~~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~yGGslenR~rf~~Eiv~aVr~avg~~-~V~vRls~~~~ 249 (402)
T 2hsa_B 171 EDYRRSALNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGAD-RVGVRVSPAID 249 (402)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGG-GEEEEECSSCC
T ss_pred HHHHHHHHHHHHcCCCEEEECCccchHHHhccCCccCccCCccCcChhhhhHHHHHHHHHHHHHhCCC-cEEEEeccccc
Confidence 455666778888999999999851 12 2346788999997 654 3444432
Q ss_pred -----CCCCHHHHHHHHHHHHhCC------CCCceeec--------CCCCC---CHH-HHHHhHHHhhccCCCeEEeCCC
Q 015289 238 -----EGYKPQEAVEVLEKLYEMG------VTPVLFEQ--------PVHRD---DWE-GLGHVSHIAKDKFGVSVAADES 294 (409)
Q Consensus 238 -----~~w~~~~A~~~~~~L~~~~------l~~~~iEe--------P~~~~---d~~-~~~~l~~~~~~~~~ipIa~dEs 294 (409)
.+++.+++.++++.|++.+ +. ||+- +..+. .-. ....+.+.+++..++||.+...
T Consensus 250 ~~g~~~~~~~~~~~~la~~le~~G~~gg~~vd--~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~~iPvi~~G~ 327 (402)
T 2hsa_B 250 HLDAMDSNPLSLGLAVVERLNKIQLHSGSKLA--YLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLRNAYQGTFICSGG 327 (402)
T ss_dssp STTCCCSCHHHHHHHHHHHHHHHHHHHTSCCS--EEEEECCCCCTTTTSSSTTTTHHHHHHHHHHHHHHHCSSCEEEESS
T ss_pred cCCCCCCCCHHHHHHHHHHHHhcCCccCCceE--EEEEecCccccccCCccccccCCcchHHHHHHHHHHCCCCEEEeCC
Confidence 3456788999999999988 74 5553 11110 000 0112222234567899999988
Q ss_pred CCCHHHHHHHHHcCCCCEEEe
Q 015289 295 CRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 295 ~~~~~~~~~~i~~~a~div~~ 315 (409)
+ +++++.++++.+.+|.|.+
T Consensus 328 i-~~~~a~~~l~~g~aD~V~i 347 (402)
T 2hsa_B 328 Y-TRELGIEAVAQGDADLVSY 347 (402)
T ss_dssp C-CHHHHHHHHHTTSCSEEEE
T ss_pred C-CHHHHHHHHHCCCCceeee
Confidence 8 9999999999999999865
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.012 Score=56.48 Aligned_cols=130 Identities=20% Similarity=0.311 Sum_probs=94.8
Q ss_pred eeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCC----------------ChhHHHHHHHHHHhhCCCcEEEEeCCCCC
Q 015289 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVHPDSSFILDANEGY 240 (409)
Q Consensus 177 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~d~~~l~avr~~~~~~~l~vDaN~~w 240 (409)
|+...+...+++++.+.++.+.+. |..+.|.+|. +++.-.+.++++|+..+ ..+.+..+.+|
T Consensus 60 ~~~~QL~g~~~~~~~~aa~~a~~~-~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~G~ 137 (318)
T 1vhn_A 60 NVAVQIFGSEPNELSEAARILSEK-YKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVS-GKFSVKTRLGW 137 (318)
T ss_dssp TEEEEEECSCHHHHHHHHHHHTTT-CSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCS-SEEEEEEESCS
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHh-CCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhC-CCEEEEecCCC
Confidence 344445455788888888888888 9999999872 23455677888888743 67888877789
Q ss_pred CHHHHHHHHHHHHhCCCCCcee-------ecCC-CCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCE
Q 015289 241 KPQEAVEVLEKLYEMGVTPVLF-------EQPV-HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADV 312 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~i-------EeP~-~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~di 312 (409)
+.++..++++.+++.|+. +| ++-. .+-+++..+++ + + ++||.++-.+.+..++.++++...+|.
T Consensus 138 ~~~~~~~~a~~l~~~G~d--~i~v~g~~~~~~~~~~~~~~~i~~i----~-~-~ipVi~~GgI~s~~da~~~l~~~gad~ 209 (318)
T 1vhn_A 138 EKNEVEEIYRILVEEGVD--EVFIHTRTVVQSFTGRAEWKALSVL----E-K-RIPTFVSGDIFTPEDAKRALEESGCDG 209 (318)
T ss_dssp SSCCHHHHHHHHHHTTCC--EEEEESSCTTTTTSSCCCGGGGGGS----C-C-SSCEEEESSCCSHHHHHHHHHHHCCSE
T ss_pred ChHHHHHHHHHHHHhCCC--EEEEcCCCccccCCCCcCHHHHHHH----H-c-CCeEEEECCcCCHHHHHHHHHcCCCCE
Confidence 876666899999999875 44 2211 12345444444 2 3 899999999999999999999655899
Q ss_pred EEeC
Q 015289 313 INIK 316 (409)
Q Consensus 313 v~~k 316 (409)
|++=
T Consensus 210 V~iG 213 (318)
T 1vhn_A 210 LLVA 213 (318)
T ss_dssp EEES
T ss_pred EEEC
Confidence 9874
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.015 Score=55.34 Aligned_cols=131 Identities=11% Similarity=0.147 Sum_probs=92.3
Q ss_pred eeeeeecCCCHHHHHHHHHHHHHcCCC-eEEEecC-----------CChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHH
Q 015289 177 TTDITIPIVSPAEAAELASKYRKQGFT-TLKLKVG-----------KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQE 244 (409)
Q Consensus 177 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~-~~KiKvG-----------~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~ 244 (409)
|+..++...+++++.+.++.+.+.||. .+-+.++ .+++.-.+.++++|+.. ++.+.+-.+..|+.++
T Consensus 95 p~~~~i~g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~-~~Pv~vKi~~~~~~~~ 173 (311)
T 1jub_A 95 PIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFF-TKPLGVKLPPYFDLVH 173 (311)
T ss_dssp CCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTC-CSCEEEEECCCCSHHH
T ss_pred CEEEEcCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhc-CCCEEEEECCCCCHHH
Confidence 334455556788998989888899999 8999875 13444456677777754 4556665566688888
Q ss_pred HHHHHHHHHhCCCCCcee------------e----cCCCC---------------CCHHHHHHhHHHhhccC--CCeEEe
Q 015289 245 AVEVLEKLYEMGVTPVLF------------E----QPVHR---------------DDWEGLGHVSHIAKDKF--GVSVAA 291 (409)
Q Consensus 245 A~~~~~~L~~~~l~~~~i------------E----eP~~~---------------~d~~~~~~l~~~~~~~~--~ipIa~ 291 (409)
..++++.+++.++. +| + .|... ..++..+++ ++.. ++||..
T Consensus 174 ~~~~a~~~~~~G~d--~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v----~~~~~~~ipvi~ 247 (311)
T 1jub_A 174 FDIMAEILNQFPLT--YVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAF----YTRLKPEIQIIG 247 (311)
T ss_dssp HHHHHHHHTTSCCC--EEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHH----HTTSCTTSEEEE
T ss_pred HHHHHHHHHHcCCc--EEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHH----HHhcCCCCCEEE
Confidence 88999999998874 43 1 11110 012233333 3456 799999
Q ss_pred CCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 292 DESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 292 dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
.=-+.+.+|+.++++.| +|.|++
T Consensus 248 ~GGI~~~~da~~~l~~G-Ad~V~v 270 (311)
T 1jub_A 248 TGGIETGQDAFEHLLCG-ATMLQI 270 (311)
T ss_dssp ESSCCSHHHHHHHHHHT-CSEEEE
T ss_pred ECCCCCHHHHHHHHHcC-CCEEEE
Confidence 99999999999999988 799987
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.11 Score=50.43 Aligned_cols=133 Identities=17% Similarity=0.237 Sum_probs=91.8
Q ss_pred eeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCC----------------ChhHHHHHHHHHHhhC--C-CcEEEEeCC
Q 015289 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVH--P-DSSFILDAN 237 (409)
Q Consensus 177 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~d~~~l~avr~~~--~-~~~l~vDaN 237 (409)
|+...+...+++++.+.++.+.+.||..|-|.+|. +++.-.+.++++++.. | .+++++...
T Consensus 59 p~~vQL~g~~p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g~~ 138 (350)
T 3b0p_A 59 PIALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLGLE 138 (350)
T ss_dssp SEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESCBT
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecCcC
Confidence 44455555678888888888888999999999862 2233455678888853 2 123343333
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCceeecC-------------CCCCCHHHHHHhHHHhhccC-CCeEEeCCCCCCHHHHHH
Q 015289 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQP-------------VHRDDWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKK 303 (409)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iEeP-------------~~~~d~~~~~~l~~~~~~~~-~ipIa~dEs~~~~~~~~~ 303 (409)
...+.++..++++.+++.|+...-+..- .++.+++..+++++ .. ++||.+.=.+.+.+++.+
T Consensus 139 ~~~~~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~----~~~~iPVianGgI~s~eda~~ 214 (350)
T 3b0p_A 139 GKETYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKG----DFPQLTFVTNGGIRSLEEALF 214 (350)
T ss_dssp TCCCHHHHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHH----HCTTSEEEEESSCCSHHHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHH----hCCCCeEEEECCcCCHHHHHH
Confidence 3345678889999999988752222211 12236666666654 45 799999999999999999
Q ss_pred HHHcCCCCEEEe
Q 015289 304 IVKGNLADVINI 315 (409)
Q Consensus 304 ~i~~~a~div~~ 315 (409)
+++ | +|.|++
T Consensus 215 ~l~-G-aD~V~i 224 (350)
T 3b0p_A 215 HLK-R-VDGVML 224 (350)
T ss_dssp HHT-T-SSEEEE
T ss_pred HHh-C-CCEEEE
Confidence 997 6 899875
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.036 Score=59.23 Aligned_cols=123 Identities=15% Similarity=0.106 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHcCCCeEEEecCC---------------------C----hhHHHHHHHHHHhh-CCCcEEE--EeC---
Q 015289 188 AEAAELASKYRKQGFTTLKLKVGK---------------------N----LKEDIEVLRAIRAV-HPDSSFI--LDA--- 236 (409)
Q Consensus 188 ~~~~~~~~~~~~~Gf~~~KiKvG~---------------------~----~~~d~~~l~avr~~-~~~~~l~--vDa--- 236 (409)
+++++.++.+++.||..+.|+.+. + ++--.+.+++||++ +++..+. +-+
T Consensus 149 ~~f~~aA~~a~~aGfDgVEih~a~gyLl~qFlsp~~N~R~D~yGGs~enR~r~~~eiv~avr~~vg~~~pv~vrls~~~~ 228 (729)
T 1o94_A 149 QFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTV 228 (729)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTTSEEEEEEEEECS
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCcCcCCCCHHHHhHHHHHHHHHHHHHhCCCceEEEEEccccC
Confidence 345666777788999999998752 1 12346788999997 7775433 322
Q ss_pred --CCCCC-HHHHHHHHHHHHhCCCCCc---------eeecCCCC------CCHHHHHHhHHHhhccCCCeEEeCCCCCCH
Q 015289 237 --NEGYK-PQEAVEVLEKLYEMGVTPV---------LFEQPVHR------DDWEGLGHVSHIAKDKFGVSVAADESCRSL 298 (409)
Q Consensus 237 --N~~w~-~~~A~~~~~~L~~~~l~~~---------~iEeP~~~------~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~ 298 (409)
.++|+ .+++.++++.|++. +... |-+...++ .+++..+++ ++..++||.+.-.+.++
T Consensus 229 ~~~~G~~~~~~~~~~~~~l~~~-~d~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~~~~~pvi~~G~i~~~ 303 (729)
T 1o94_A 229 YGPGQIEAEVDGQKFVEMADSL-VDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLV----KQVSKKPVLGVGRYTDP 303 (729)
T ss_dssp SCTTSCCTTTHHHHHHHHHGGG-CSEEEEEECCSTTGGGTSCCTTTCCTTTTHHHHHHH----HTTCSSCEECCSCCCCH
T ss_pred cCCCCCCchHHHHHHHHHHHhh-cCEEEEeeecccccccccCCccccCccccHHHHHHH----HHHCCCEEEEeCCCCCH
Confidence 25788 67889999999873 3200 21221221 123333444 45789999999999999
Q ss_pred HHHHHHHHcCCCCEEEe
Q 015289 299 DDVKKIVKGNLADVINI 315 (409)
Q Consensus 299 ~~~~~~i~~~a~div~~ 315 (409)
+++.++++.+.+|.|.+
T Consensus 304 ~~a~~~l~~g~aD~V~~ 320 (729)
T 1o94_A 304 EKMIEIVTKGYADIIGC 320 (729)
T ss_dssp HHHHHHHHTTSCSBEEE
T ss_pred HHHHHHHHCCCCCEEEe
Confidence 99999999999999864
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.017 Score=55.03 Aligned_cols=132 Identities=11% Similarity=0.057 Sum_probs=93.5
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHcCCC---eEEEecC-----------CChhHHHHHHHHHHhhCCCcEEEEeCCCCCC
Q 015289 176 ITTDITIPIVSPAEAAELASKYRKQGFT---TLKLKVG-----------KNLKEDIEVLRAIRAVHPDSSFILDANEGYK 241 (409)
Q Consensus 176 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~---~~KiKvG-----------~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~ 241 (409)
.|+..++...+++++.+.++.+.+.||. .+-+.++ .+++.-.+.++++|+.. ++.+.+-....|+
T Consensus 94 ~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~~g~~~~g~~~~~~~~ii~~vr~~~-~~Pv~vK~~~~~~ 172 (314)
T 2e6f_A 94 KPLFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAY-GLPFGVKMPPYFD 172 (314)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGSHHHHHHHHHHHHHHH-CSCEEEEECCCCC
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCCCCchhhcCCHHHHHHHHHHHHHhc-CCCEEEEECCCCC
Confidence 3445556666888888888888888999 8998875 13444456788888863 4556666666689
Q ss_pred HHHHHHHHHHHHhCC-CCCceee----------------cCCC---------------CCCHHHHHHhHHHhhccC-CCe
Q 015289 242 PQEAVEVLEKLYEMG-VTPVLFE----------------QPVH---------------RDDWEGLGHVSHIAKDKF-GVS 288 (409)
Q Consensus 242 ~~~A~~~~~~L~~~~-l~~~~iE----------------eP~~---------------~~d~~~~~~l~~~~~~~~-~ip 288 (409)
.++..++++.+++.+ +. +|- .|.. +..++..++++ +.. ++|
T Consensus 173 ~~~~~~~a~~~~~aG~~d--~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~----~~~~~ip 246 (314)
T 2e6f_A 173 IAHFDTAAAVLNEFPLVK--FVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFY----RRCPDKL 246 (314)
T ss_dssp HHHHHHHHHHHHTCTTEE--EEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHH----HHCTTSE
T ss_pred HHHHHHHHHHHHhcCCce--EEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHH----HhcCCCC
Confidence 889889999999988 64 442 1110 00123334443 355 899
Q ss_pred EEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 289 VAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 289 Ia~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
|...=.+.+.+++.++++.| +|.|++
T Consensus 247 vi~~GGI~~~~da~~~l~~G-Ad~V~i 272 (314)
T 2e6f_A 247 VFGCGGVYSGEDAFLHILAG-ASMVQV 272 (314)
T ss_dssp EEEESSCCSHHHHHHHHHHT-CSSEEE
T ss_pred EEEECCCCCHHHHHHHHHcC-CCEEEE
Confidence 99999999999999999988 798876
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.082 Score=55.99 Aligned_cols=121 Identities=15% Similarity=0.103 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHcCCCeEEEecCC----------------------Chh----HHHHHHHHHHhh-CCCc--EEEEeCC-
Q 015289 188 AEAAELASKYRKQGFTTLKLKVGK----------------------NLK----EDIEVLRAIRAV-HPDS--SFILDAN- 237 (409)
Q Consensus 188 ~~~~~~~~~~~~~Gf~~~KiKvG~----------------------~~~----~d~~~l~avr~~-~~~~--~l~vDaN- 237 (409)
+++.+.++.+++.||..+.|+.+. +++ --.+.+++||++ ++++ .+++-++
T Consensus 156 ~~f~~aA~~a~~aGfDgVeih~a~gy~L~~qFlsp~~N~R~D~yGGs~enR~r~~~ei~~avr~~~g~~~~v~~r~s~~~ 235 (690)
T 3k30_A 156 RWHRNAVRRSIEAGYDIVYVYGAHGYSGVHHFLSKRYNQRTDEYGGSLENRMRLLRELLEDTLDECAGRAAVACRITVEE 235 (690)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECTTCSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTSSEEEEEEECCC
T ss_pred HHHHHHHHHHHHcCCCEEEEcccccchHHHHhCCCccCCCccccCCCHHHHHHHHHHHHHHHHHHhCCCceEEEEECccc
Confidence 344666677788899999997541 222 345788999997 7774 5566544
Q ss_pred ---CCCCHHHHHHHHHHHHhCCCCCceee-------cC----C-CC--CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHH
Q 015289 238 ---EGYKPQEAVEVLEKLYEMGVTPVLFE-------QP----V-HR--DDWEGLGHVSHIAKDKFGVSVAADESCRSLDD 300 (409)
Q Consensus 238 ---~~w~~~~A~~~~~~L~~~~l~~~~iE-------eP----~-~~--~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~ 300 (409)
++|+.+++.++++.|++ ++. +++ ++ . .+ .+++..+++ ++..++||...-.+.++++
T Consensus 236 ~~~~g~~~~~~~~~~~~l~~-~~d--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~~~~~pvi~~G~i~~~~~ 308 (690)
T 3k30_A 236 EIDGGITREDIEGVLRELGE-LPD--LWDFAMGSWEGDSVTSRFAPEGRQEEFVAGL----KKLTTKPVVGVGRFTSPDA 308 (690)
T ss_dssp CSTTSCCHHHHHHHHHHHTT-SSS--EEEEECSCHHHHTCCTTTCCTTTTHHHHTTS----GGGCSSCEEECSCCCCHHH
T ss_pred cCCCCCCHHHHHHHHHHHHh-hcC--EEEEecccccccCCCCccCCccccHHHHHHH----HHHcCCeEEEeCCCCCHHH
Confidence 57899999999999998 443 332 11 1 11 122223333 4567899999889999999
Q ss_pred HHHHHHcCCCCEEEe
Q 015289 301 VKKIVKGNLADVINI 315 (409)
Q Consensus 301 ~~~~i~~~a~div~~ 315 (409)
..++++.+.+|.|.+
T Consensus 309 a~~~l~~g~~d~v~~ 323 (690)
T 3k30_A 309 MVRQIKAGILDLIGA 323 (690)
T ss_dssp HHHHHHTTSCSEEEE
T ss_pred HHHHHHCCCcceEEE
Confidence 999999999999864
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.11 Score=49.93 Aligned_cols=121 Identities=11% Similarity=0.078 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHcCCCeEEEecCC----------ChhHHHHHHHHHHhh--------CCCcEEEEeCCCCCCHHHHHHH
Q 015289 187 PAEAAELASKYRKQGFTTLKLKVGK----------NLKEDIEVLRAIRAV--------HPDSSFILDANEGYKPQEAVEV 248 (409)
Q Consensus 187 ~~~~~~~~~~~~~~Gf~~~KiKvG~----------~~~~d~~~l~avr~~--------~~~~~l~vDaN~~w~~~~A~~~ 248 (409)
++++.+.++.+.+ |+..+-+.++. +.+.-.+.+++||+. ++++.+.+-.+..|+.++..++
T Consensus 152 ~~~~~~aa~~~~~-g~d~iein~~sP~~~g~~~~~~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~~~~~~~~~~ 230 (336)
T 1f76_A 152 KDDYLICMEKIYA-YAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQV 230 (336)
T ss_dssp HHHHHHHHHHHGG-GCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHH
T ss_pred HHHHHHHHHHHhc-cCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhcccccCceEEEecCCCCHHHHHHH
Confidence 6677776666554 99999998862 122334667778775 3578899888888999999999
Q ss_pred HHHHHhCCCCCceeec-------------CCCCC------------CHHHHHHhHHHhhccC--CCeEEeCCCCCCHHHH
Q 015289 249 LEKLYEMGVTPVLFEQ-------------PVHRD------------DWEGLGHVSHIAKDKF--GVSVAADESCRSLDDV 301 (409)
Q Consensus 249 ~~~L~~~~l~~~~iEe-------------P~~~~------------d~~~~~~l~~~~~~~~--~ipIa~dEs~~~~~~~ 301 (409)
++.+++.|+. +|.= |.... .++..++++ +.. ++||.+.=.+.+..|+
T Consensus 231 a~~l~~~Gvd--~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~----~~~~~~ipVi~~GGI~~~~da 304 (336)
T 1f76_A 231 ADSLVRHNID--GVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLS----LELNGRLPIIGVGGIDSVIAA 304 (336)
T ss_dssp HHHHHHTTCS--EEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHH----HHHTTSSCEEEESSCCSHHHH
T ss_pred HHHHHHcCCc--EEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHH----HHhCCCCCEEEECCCCCHHHH
Confidence 9999998864 4430 00000 012233343 344 7999999999999999
Q ss_pred HHHHHcCCCCEEEe
Q 015289 302 KKIVKGNLADVINI 315 (409)
Q Consensus 302 ~~~i~~~a~div~~ 315 (409)
.++++.| +|.|++
T Consensus 305 ~~~l~~G-Ad~V~i 317 (336)
T 1f76_A 305 REKIAAG-ASLVQI 317 (336)
T ss_dssp HHHHHHT-CSEEEE
T ss_pred HHHHHCC-CCEEEe
Confidence 9999998 799977
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.32 Score=48.29 Aligned_cols=118 Identities=15% Similarity=0.225 Sum_probs=80.7
Q ss_pred HHHHHHHHHHcCCCeEEEecCC---------------------Ch-h----HHHHHHHHHHhh-----CCCcEEEEeCC-
Q 015289 190 AAELASKYRKQGFTTLKLKVGK---------------------NL-K----EDIEVLRAIRAV-----HPDSSFILDAN- 237 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~-~----~d~~~l~avr~~-----~~~~~l~vDaN- 237 (409)
.++.++.+++.||..|-|..+. .+ + --++.+++||++ ++++.+.+=.+
T Consensus 172 F~~AA~rA~~AGfDgVEIH~ahGYLl~QFlSp~~N~RtD~yGGs~lenR~Rf~~evv~aVr~~v~~~~~~~f~v~vRis~ 251 (419)
T 3l5a_A 172 YRDATLRAIKAGFDGVEISIAQRLLIQTFFSTFSNRRTDHYGADSLKNRARLCLEVMRAVQEVIDKEAPDNFILGFRATP 251 (419)
T ss_dssp HHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSTTCHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECS
T ss_pred HHHHHHHHHHcCCCEEEECCccchHHHHccCCcccccccCCCCchhhhhhHHHHHHHHHHHHHHhhhcCCCeeEEEeccc
Confidence 3555677788999999999761 12 2 235678888885 45655444332
Q ss_pred -----C--CCCHHHHHHHHHHHHh-CCCCCceee------------cCCCC--CCHHHHHHhHHHhhccC--CCeEEeCC
Q 015289 238 -----E--GYKPQEAVEVLEKLYE-MGVTPVLFE------------QPVHR--DDWEGLGHVSHIAKDKF--GVSVAADE 293 (409)
Q Consensus 238 -----~--~w~~~~A~~~~~~L~~-~~l~~~~iE------------eP~~~--~d~~~~~~l~~~~~~~~--~ipIa~dE 293 (409)
+ +|+.+++.++++.|++ .++. ||+ .+... .+++-.+.+++ .. .+||.+.=
T Consensus 252 ~~~~~~~~G~~~ed~~~la~~L~~~~Gvd--~I~vs~g~~~~~~~~~~~~g~~~~~~~a~~Ik~----~v~~~iPVI~~G 325 (419)
T 3l5a_A 252 EETRGSDLGYTIDEFNQLIDWVMDVSNIQ--YLAIASWGRHIYQNTSRTPGDHFGRPVNQIVYE----HLAGRIPLIASG 325 (419)
T ss_dssp CEEETTEEEECHHHHHHHHHHHHHHSCCC--CEEECCTTCCGGGCBCCCSSTTTTSBHHHHHHH----HHTTSSCEEECS
T ss_pred ccccCCCCCCCHHHHHHHHHHHHhhcCCc--EEEEeeCCccccccccCCCCccccHHHHHHHHH----HcCCCCeEEEEC
Confidence 2 8999999999999999 8764 443 12111 12333444443 33 58999988
Q ss_pred CCCCHHHHHHHHHcCCCCEEEe
Q 015289 294 SCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 294 s~~~~~~~~~~i~~~a~div~~ 315 (409)
.+.++++..++++. +|.|.+
T Consensus 326 gI~t~e~Ae~~L~~--aDlVai 345 (419)
T 3l5a_A 326 GINSPESALDALQH--ADMVGM 345 (419)
T ss_dssp SCCSHHHHHHHGGG--CSEEEE
T ss_pred CCCCHHHHHHHHHh--CCcHHH
Confidence 89999999999988 898865
|
| >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.073 Score=51.23 Aligned_cols=95 Identities=22% Similarity=0.285 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCceeecCCCC-CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 015289 240 YKPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (409)
Q Consensus 240 w~~~~A~~~~~~L~~~~l~~~~iEeP~~~-~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~ 318 (409)
-+.+..++.+++|.+.|-+ .+--.++. ++.+.+++++ +++.+||.+|-+ ++..-+...++.| +|.+.++|.
T Consensus 43 ~D~~atv~Qi~~l~~aG~d--iVRvavp~~~~a~al~~I~----~~~~vPlvaDiH-f~~~lal~a~e~G-~dklRINPG 114 (366)
T 3noy_A 43 HDVEATLNQIKRLYEAGCE--IVRVAVPHKEDVEALEEIV----KKSPMPVIADIH-FAPSYAFLSMEKG-VHGIRINPG 114 (366)
T ss_dssp TCHHHHHHHHHHHHHTTCC--EEEEECCSHHHHHHHHHHH----HHCSSCEEEECC-SCHHHHHHHHHTT-CSEEEECHH
T ss_pred cCHHHHHHHHHHHHHcCCC--EEEeCCCChHHHHHHHHHH----hcCCCCEEEeCC-CCHHHHHHHHHhC-CCeEEECCc
Confidence 4677778888999998865 77777764 2344455554 468999999987 4556666778776 799999999
Q ss_pred CCc-HHHHHHHHHHHHHcCCcEEEc
Q 015289 319 KVG-VLGALEIIEVVRASGLNLMIG 342 (409)
Q Consensus 319 ~~G-i~~~~~i~~~A~~~gi~~~~~ 342 (409)
.+| -....++++.|+++|+++.+|
T Consensus 115 Nig~~~~~~~vv~~ak~~~~piRIG 139 (366)
T 3noy_A 115 NIGKEEIVREIVEEAKRRGVAVRIG 139 (366)
T ss_dssp HHSCHHHHHHHHHHHHHHTCEEEEE
T ss_pred ccCchhHHHHHHHHHHHcCCCEEEe
Confidence 998 667788999999999999986
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=94.50 E-value=1.2 Score=41.86 Aligned_cols=126 Identities=14% Similarity=0.105 Sum_probs=84.3
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeEEEecCC----------------ChhHHHHHHHHHHhh--CCCcEE--EEeCC-CCCC
Q 015289 183 PIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAV--HPDSSF--ILDAN-EGYK 241 (409)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~d~~~l~avr~~--~~~~~l--~vDaN-~~w~ 241 (409)
+..+++++.+.++++.+.|...+||.=+. +.++-+++|++++++ .+++.| +-|+. ....
T Consensus 89 Gyg~~~~v~~~v~~l~~aGaagv~iED~~~~k~cgH~gg~~k~l~p~~e~~~rI~Aa~~a~~~~~~~i~aRtda~~a~~g 168 (295)
T 1s2w_A 89 GYGNFNNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGWG 168 (295)
T ss_dssp SCSSHHHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCC
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEECCCCCCccccccCCCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHHhcccc
Confidence 34577788888899999999999985331 223448899999987 366555 57877 6677
Q ss_pred HHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEE
Q 015289 242 PQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 313 (409)
Q Consensus 242 ~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div 313 (409)
.+++++.++.+.+.|....|+|-+++ +.+..+++++.+. ..+|+...-+.++..+..++-+.| +..+
T Consensus 169 ~~~ai~Ra~ay~eAGAd~i~~e~~~~--~~~~~~~i~~~~~--~~~P~i~~~~~~~~~~~~eL~~lG-v~~v 235 (295)
T 1s2w_A 169 LDEALKRAEAYRNAGADAILMHSKKA--DPSDIEAFMKAWN--NQGPVVIVPTKYYKTPTDHFRDMG-VSMV 235 (295)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCSS--SSHHHHHHHHHHT--TCSCEEECCSTTTTSCHHHHHHHT-CCEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCC--CHHHHHHHHHHcC--CCCCEEEeCCCCCCCCHHHHHHcC-CcEE
Confidence 99999999999999877779996555 2344677765321 127887643221112344555555 3443
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=93.75 E-value=1.3 Score=41.54 Aligned_cols=128 Identities=10% Similarity=0.148 Sum_probs=81.3
Q ss_pred eeeecCCCHHHHHHHHHHHHH-cCCCeEEEecCC------------ChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHH
Q 015289 179 DITIPIVSPAEAAELASKYRK-QGFTTLKLKVGK------------NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEA 245 (409)
Q Consensus 179 ~~~i~~~~~~~~~~~~~~~~~-~Gf~~~KiKvG~------------~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A 245 (409)
..++...+++++.+.++.+.+ .|+..+.+.++. +++.-.+.++++|+.. ++.+.+=....|+ +.
T Consensus 102 ~v~l~~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~~-~~pv~vk~~~~~~--~~ 178 (311)
T 1ep3_A 102 IANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVS-KVPLYVKLSPNVT--DI 178 (311)
T ss_dssp EEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHC-SSCEEEEECSCSS--CS
T ss_pred EEEEcCCCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHhc-CCCEEEEECCChH--HH
Confidence 344445567888777777666 899999987761 2333467788888863 3444443222232 23
Q ss_pred HHHHHHHHhCCCCCceeec----------CCCC--------------CC----HHHHHHhHHHhhccCCCeEEeCCCCCC
Q 015289 246 VEVLEKLYEMGVTPVLFEQ----------PVHR--------------DD----WEGLGHVSHIAKDKFGVSVAADESCRS 297 (409)
Q Consensus 246 ~~~~~~L~~~~l~~~~iEe----------P~~~--------------~d----~~~~~~l~~~~~~~~~ipIa~dEs~~~ 297 (409)
.++++.+++.++. +|-= +-.. .+ ++.++++ ++.+++||.+.=.+.+
T Consensus 179 ~~~a~~l~~~G~d--~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i----~~~~~ipvia~GGI~~ 252 (311)
T 1ep3_A 179 VPIAKAVEAAGAD--GLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQV----AQDVDIPIIGMGGVAN 252 (311)
T ss_dssp HHHHHHHHHTTCS--EEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHH----HTTCSSCEEECSSCCS
T ss_pred HHHHHHHHHcCCC--EEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHH----HHhcCCCEEEECCcCC
Confidence 4567778888764 3321 1000 00 1223333 3467899999999999
Q ss_pred HHHHHHHHHcCCCCEEEeC
Q 015289 298 LDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 298 ~~~~~~~i~~~a~div~~k 316 (409)
..++.++++.| +|.+++=
T Consensus 253 ~~d~~~~l~~G-Ad~V~vg 270 (311)
T 1ep3_A 253 AQDVLEMYMAG-ASAVAVG 270 (311)
T ss_dssp HHHHHHHHHHT-CSEEEEC
T ss_pred HHHHHHHHHcC-CCEEEEC
Confidence 99999999988 7999763
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=93.72 E-value=0.87 Score=43.93 Aligned_cols=135 Identities=9% Similarity=0.112 Sum_probs=84.9
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHcCCC-eEEEecC-------C----ChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHH
Q 015289 176 ITTDITIPIVSPAEAAELASKYRKQGFT-TLKLKVG-------K----NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQ 243 (409)
Q Consensus 176 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~-~~KiKvG-------~----~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~ 243 (409)
.|+..++...+++++.+.++.+.+.||. .|-+.++ . +++.-.+.+++||+.. ++.+.+=-.-.++..
T Consensus 129 ~pvivsI~g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~G~~~l~~~~e~l~~il~av~~~~-~~PV~vKi~p~~~~~ 207 (345)
T 3oix_A 129 KNHFLSLVGMSPEETHTILXMVEASKYQGLVELNLSCPNVPGXPQIAYDFETTDQILSEVFTYF-TKPLGIKLPPYFDIV 207 (345)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHSSCCSEEEEECSCCCSTTCCCGGGCHHHHHHHHHHHTTTC-CSCEEEEECCCCCHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHhccCCCcEEEEecCCCCcCCchhhcCCHHHHHHHHHHHHHHh-CCCeEEEECCCCCHH
Confidence 4555667677899999988888778998 8999987 1 2333345566777653 233333222226777
Q ss_pred HHHHHHHHHHhCCCCCc----------eee--cCCC---------------CCCHHHHHHhHHHhhccC--CCeEEeCCC
Q 015289 244 EAVEVLEKLYEMGVTPV----------LFE--QPVH---------------RDDWEGLGHVSHIAKDKF--GVSVAADES 294 (409)
Q Consensus 244 ~A~~~~~~L~~~~l~~~----------~iE--eP~~---------------~~d~~~~~~l~~~~~~~~--~ipIa~dEs 294 (409)
+..+.++.+...++... -+. .|.- +-.++..++++ +.. .+||...=.
T Consensus 208 ~~a~~~~~aga~~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~v~~i~----~~~~~~ipIIg~GG 283 (345)
T 3oix_A 208 HFDQAAAIFNXYPLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFY----KRLNPSIQIIGTGG 283 (345)
T ss_dssp HHHHHHHHHTTSCCSEEEECCCEEEEECEETTEESCSGGGGEEEEEEGGGHHHHHHHHHHHH----TTSCTTSEEEEESS
T ss_pred HHHHHHHHhCCCceEEEEeecccccceeeccCccccccccccCCcCCccccHHHHHHHHHHH----HHcCCCCcEEEECC
Confidence 76666666655554200 022 2211 00123333443 455 699999999
Q ss_pred CCCHHHHHHHHHcCCCCEEEeC
Q 015289 295 CRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 295 ~~~~~~~~~~i~~~a~div~~k 316 (409)
+.+.+|+.++++.| +|.||+=
T Consensus 284 I~s~~da~~~l~aG-Ad~V~ig 304 (345)
T 3oix_A 284 VXTGRDAFEHILCG-ASMVQIG 304 (345)
T ss_dssp CCSHHHHHHHHHHT-CSEEEES
T ss_pred CCChHHHHHHHHhC-CCEEEEC
Confidence 99999999999988 6999874
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=93.62 E-value=0.54 Score=45.54 Aligned_cols=132 Identities=15% Similarity=0.129 Sum_probs=88.3
Q ss_pred eeeeeeecCCCHHHHHHHHHHHH---HcCCCeEEEecC-------C----ChhHHHHHHHHHHhhCCCcEEEEeCCCCCC
Q 015289 176 ITTDITIPIVSPAEAAELASKYR---KQGFTTLKLKVG-------K----NLKEDIEVLRAIRAVHPDSSFILDANEGYK 241 (409)
Q Consensus 176 i~~~~~i~~~~~~~~~~~~~~~~---~~Gf~~~KiKvG-------~----~~~~d~~~l~avr~~~~~~~l~vDaN~~w~ 241 (409)
.|+..++...+++++.+.++.+. +.|+..|-+.++ . +++.-.+.+++||+.. ++.+.|=-.-.|+
T Consensus 127 ~pvivsI~G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~gg~~l~~~~e~~~~il~av~~~~-~~PV~vKi~p~~d 205 (354)
T 4ef8_A 127 KPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVY-PHSFGVKMPPYFD 205 (354)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCSTTSCCGGGSHHHHHHHHHHHHHHC-CSCEEEEECCCCS
T ss_pred CcEEEEeccCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCCCchhhccCHHHHHHHHHHHHHhh-CCCeEEEecCCCC
Confidence 45556666668888877777665 568999999987 1 2334455677888763 3445555444578
Q ss_pred HHHHHHHHHHHHhCC-CCCcee----------------ecCC---------------CCCCHHHHHHhHHHhhccC-CCe
Q 015289 242 PQEAVEVLEKLYEMG-VTPVLF----------------EQPV---------------HRDDWEGLGHVSHIAKDKF-GVS 288 (409)
Q Consensus 242 ~~~A~~~~~~L~~~~-l~~~~i----------------EeP~---------------~~~d~~~~~~l~~~~~~~~-~ip 288 (409)
.++..++++.+++.+ +. +| +.|. .+-+++..+++++ .. .+|
T Consensus 206 ~~~~~~~a~~~~~~Gg~d--~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~a~~~i~~v~~----~~~~ip 279 (354)
T 4ef8_A 206 FAHFDAAAEILNEFPKVQ--FITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYR----RCPGKL 279 (354)
T ss_dssp HHHHHHHHHHHHTCTTEE--EEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHH----HCTTSE
T ss_pred HHHHHHHHHHHHhCCCcc--EEEEecccCcceeeeccCCccccccccccCCCCCCCCchHHHHHHHHHHH----hCCCCC
Confidence 877778888888876 32 21 1111 1122444445543 33 699
Q ss_pred EEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 289 VAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 289 Ia~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
|...=-+.+.+|+.++++.| +|.|++
T Consensus 280 II~~GGI~s~~da~~~l~aG-Ad~V~v 305 (354)
T 4ef8_A 280 IFGCGGVYTGEDAFLHVLAG-ASMVQV 305 (354)
T ss_dssp EEEESCCCSHHHHHHHHHHT-EEEEEE
T ss_pred EEEECCcCCHHHHHHHHHcC-CCEEEE
Confidence 99999999999999999988 699987
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=93.58 E-value=0.31 Score=44.41 Aligned_cols=97 Identities=10% Similarity=0.126 Sum_probs=70.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCceeecCCCCCC-HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 015289 240 YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (409)
Q Consensus 240 w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~ 318 (409)
-+++++.+++++|-+-|+. +||=++...+ .+.++++++.+ -++-|..| ++.+.++++.+++.|+ |++..-
T Consensus 43 ~~~~~a~~~a~al~~gGi~--~iEvt~~t~~a~e~I~~l~~~~---~~~~iGaG-TVlt~~~a~~Ai~AGA-~fIvsP-- 113 (232)
T 4e38_A 43 DNAEDIIPLGKVLAENGLP--AAEITFRSDAAVEAIRLLRQAQ---PEMLIGAG-TILNGEQALAAKEAGA-TFVVSP-- 113 (232)
T ss_dssp SSGGGHHHHHHHHHHTTCC--EEEEETTSTTHHHHHHHHHHHC---TTCEEEEE-CCCSHHHHHHHHHHTC-SEEECS--
T ss_pred CCHHHHHHHHHHHHHCCCC--EEEEeCCCCCHHHHHHHHHHhC---CCCEEeEC-CcCCHHHHHHHHHcCC-CEEEeC--
Confidence 3578899999999999986 9998887443 44455555421 24556565 6888999999999985 887431
Q ss_pred CCcHHHHHHHHHHHHHcCCcEEEccCCchHH
Q 015289 319 KVGVLGALEIIEVVRASGLNLMIGGMVETRL 349 (409)
Q Consensus 319 ~~Gi~~~~~i~~~A~~~gi~~~~~~~~es~i 349 (409)
|. ..++++.|+++|+++++|++.-+.+
T Consensus 114 --~~--~~~vi~~~~~~gi~~ipGv~TptEi 140 (232)
T 4e38_A 114 --GF--NPNTVRACQEIGIDIVPGVNNPSTV 140 (232)
T ss_dssp --SC--CHHHHHHHHHHTCEEECEECSHHHH
T ss_pred --CC--CHHHHHHHHHcCCCEEcCCCCHHHH
Confidence 12 1466788999999999998754443
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.03 E-value=4.2 Score=38.02 Aligned_cols=121 Identities=12% Similarity=0.167 Sum_probs=85.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEecCC-------------ChhHHHHHHHHHHhh--CCCcEE--EEeCCCCCCHHHHH
Q 015289 184 IVSPAEAAELASKYRKQGFTTLKLKVGK-------------NLKEDIEVLRAIRAV--HPDSSF--ILDANEGYKPQEAV 246 (409)
Q Consensus 184 ~~~~~~~~~~~~~~~~~Gf~~~KiKvG~-------------~~~~d~~~l~avr~~--~~~~~l--~vDaN~~w~~~~A~ 246 (409)
..+++++.+-++++.+.|...+||.=+. +.++-+++|++++++ .+++.+ +-|+ .....++++
T Consensus 93 yg~~~~~~~~v~~l~~aGa~gv~iED~~~pKrcgh~~gkl~~~~e~~~~I~aa~~a~~~~~~~i~aRtda-a~~gl~~ai 171 (287)
T 3b8i_A 93 YGNALNVMRTVVELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAALEARVDPALTIIARTNA-ELIDVDAVI 171 (287)
T ss_dssp SSSHHHHHHHHHHHHHHTCSEEEEECBCCSCCTTTCTTCBCCHHHHHHHHHHHHHHCCSTTSEEEEEEET-TTSCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEEcCCCCccccCCCCCCccCHHHHHHHHHHHHHcCCCCCcEEEEechh-hhcCHHHHH
Confidence 4588888888999999999999996442 334668899999997 356655 6899 777899999
Q ss_pred HHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCC-CCHHHHHHHHHcCCCCEE
Q 015289 247 EVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESC-RSLDDVKKIVKGNLADVI 313 (409)
Q Consensus 247 ~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~-~~~~~~~~~i~~~a~div 313 (409)
+.++.+++.|....|+|-+ + +.+..+++++ ...+|+..=|.- .....+.++-+.| +..+
T Consensus 172 ~Ra~ay~eAGAd~i~~e~~-~--~~~~~~~i~~----~~~~P~ii~~~g~~~~~~~~eL~~lG-v~~v 231 (287)
T 3b8i_A 172 QRTLAYQEAGADGICLVGV-R--DFAHLEAIAE----HLHIPLMLVTYGNPQLRDDARLARLG-VRVV 231 (287)
T ss_dssp HHHHHHHHTTCSEEEEECC-C--SHHHHHHHHT----TCCSCEEEECTTCGGGCCHHHHHHTT-EEEE
T ss_pred HHHHHHHHcCCCEEEecCC-C--CHHHHHHHHH----hCCCCEEEeCCCCCCCCCHHHHHHcC-CcEE
Confidence 9999999998776799964 2 3455677764 567888753321 1112344555555 3444
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=92.37 E-value=0.88 Score=42.93 Aligned_cols=125 Identities=14% Similarity=0.074 Sum_probs=86.6
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeEEEecC--------------CChhHHHHHHHHHHhh--CCCcEE--EEeCCCCCCHHH
Q 015289 183 PIVSPAEAAELASKYRKQGFTTLKLKVG--------------KNLKEDIEVLRAIRAV--HPDSSF--ILDANEGYKPQE 244 (409)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG--------------~~~~~d~~~l~avr~~--~~~~~l--~vDaN~~w~~~~ 244 (409)
+..+++++.+.++.+.+.|...+||.=+ .+.++-+++|++.+++ ++++.| |.|+......++
T Consensus 93 Gyg~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~~~glde 172 (298)
T 3eoo_A 93 GWGGAFNIARTIRSFIKAGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTDAAAAEGIDA 172 (298)
T ss_dssp CSSSHHHHHHHHHHHHHTTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeehhhhhcCHHH
Confidence 3447888888889999999999998522 1345668899998886 467654 688876667899
Q ss_pred HHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCC--CH-HHHHHHHHcCCCCEEEe
Q 015289 245 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCR--SL-DDVKKIVKGNLADVINI 315 (409)
Q Consensus 245 A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~--~~-~~~~~~i~~~a~div~~ 315 (409)
|++.++...+.|....|+|-+- +.+.++++++ ..++|+...-... ++ ....++-+.| +..+..
T Consensus 173 ai~Ra~ay~~AGAD~if~~~~~---~~ee~~~~~~----~~~~Pl~~n~~~~g~tp~~~~~eL~~lG-v~~v~~ 238 (298)
T 3eoo_A 173 AIERAIAYVEAGADMIFPEAMK---TLDDYRRFKE----AVKVPILANLTEFGSTPLFTLDELKGAN-VDIALY 238 (298)
T ss_dssp HHHHHHHHHHTTCSEEEECCCC---SHHHHHHHHH----HHCSCBEEECCTTSSSCCCCHHHHHHTT-CCEEEE
T ss_pred HHHHHHhhHhcCCCEEEeCCCC---CHHHHHHHHH----HcCCCeEEEeccCCCCCCCCHHHHHHcC-CeEEEE
Confidence 9999999999887767998763 5677788775 3557875532211 11 1244455555 455533
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=91.72 E-value=2 Score=43.28 Aligned_cols=117 Identities=23% Similarity=0.315 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceee----
Q 015289 189 EAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE---- 263 (409)
Q Consensus 189 ~~~~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE---- 263 (409)
+..+.++.+++.|+..+-+... .......+.++.+|+..|++.+.+- +..+.++| +.+.+.|+. +|-
T Consensus 237 ~~~~~a~~l~~aGvd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~g--~~~t~e~a----~~l~~~G~d--~I~v~~~ 308 (494)
T 1vrd_A 237 ETMERVEKLVKAGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAG--NVATPEGT----EALIKAGAD--AVKVGVG 308 (494)
T ss_dssp THHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEE--EECSHHHH----HHHHHTTCS--EEEECSS
T ss_pred hHHHHHHHHHHhCCCEEEEEecCCchHHHHHHHHHHHHHCCCceEEeC--CcCCHHHH----HHHHHcCCC--EEEEcCC
Confidence 3456777888899999988654 2345678889999998777877763 35677776 445566654 442
Q ss_pred ----------cCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 264 ----------QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 264 ----------eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
+....-....+.++.+.+ +..++||.++=-+.+..|+.+++..| +|.+++
T Consensus 309 ~G~~~~~~~~~~~g~p~~~~l~~v~~~~-~~~~ipvia~GGI~~~~di~kala~G-Ad~V~i 368 (494)
T 1vrd_A 309 PGSICTTRVVAGVGVPQLTAVMECSEVA-RKYDVPIIADGGIRYSGDIVKALAAG-AESVMV 368 (494)
T ss_dssp CSTTCHHHHHHCCCCCHHHHHHHHHHHH-HTTTCCEEEESCCCSHHHHHHHHHTT-CSEEEE
T ss_pred CCccccccccCCCCccHHHHHHHHHHHH-hhcCCCEEEECCcCCHHHHHHHHHcC-CCEEEE
Confidence 111112345556665432 24589999999999999999999998 699874
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=91.68 E-value=0.57 Score=44.03 Aligned_cols=93 Identities=14% Similarity=0.194 Sum_probs=67.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCCceeecCC--C-------CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCC
Q 015289 239 GYKPQEAVEVLEKLYEMGVTPVLFEQPV--H-------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 309 (409)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~iEeP~--~-------~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a 309 (409)
.++.++.+++++.|++.|+. .||.=. . .++++.++.++ +..+++++.- +.+..+++++++.|
T Consensus 22 ~~~~e~k~~i~~~L~~~Gv~--~IE~g~~~~~~~~p~~~~~~e~~~~i~----~~~~~~v~~l--~~n~~~i~~a~~~G- 92 (295)
T 1ydn_A 22 FVPTADKIALINRLSDCGYA--RIEATSFVSPKWVPQLADSREVMAGIR----RADGVRYSVL--VPNMKGYEAAAAAH- 92 (295)
T ss_dssp CCCHHHHHHHHHHHTTTTCS--EEEEEECSCTTTCGGGTTHHHHHHHSC----CCSSSEEEEE--CSSHHHHHHHHHTT-
T ss_pred CcCHHHHHHHHHHHHHcCcC--EEEEccCcCccccccccCHHHHHHHHH----hCCCCEEEEE--eCCHHHHHHHHHCC-
Confidence 37899999999999999985 888732 1 24455455553 2357888542 37789999999987
Q ss_pred CCEEEeCC--C--------CCc----HHHHHHHHHHHHHcCCcEE
Q 015289 310 ADVINIKL--A--------KVG----VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 310 ~div~~k~--~--------~~G----i~~~~~i~~~A~~~gi~~~ 340 (409)
++.+.+.. + +.+ +..+.+++++|+++|+.+.
T Consensus 93 ~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~ 137 (295)
T 1ydn_A 93 ADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIR 137 (295)
T ss_dssp CSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 68888873 3 333 4456778999999999987
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=91.41 E-value=5.3 Score=35.64 Aligned_cols=109 Identities=14% Similarity=0.196 Sum_probs=73.8
Q ss_pred HHHHHHHHcCCCeEEEecCC--Ch--hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCcee-----
Q 015289 192 ELASKYRKQGFTTLKLKVGK--NL--KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF----- 262 (409)
Q Consensus 192 ~~~~~~~~~Gf~~~KiKvG~--~~--~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i----- 262 (409)
++++.+.+.|...+-+.... ++ ....+.++.+|+.+++..+.++.+ +.+++.. +.+.+.. ++
T Consensus 92 ~~i~~~~~~Gad~V~l~~~~~~~~~~~~~~~~i~~i~~~~~~~~v~~~~~---t~~ea~~----a~~~Gad--~i~~~v~ 162 (234)
T 1yxy_A 92 TEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADIS---TFDEGLV----AHQAGID--FVGTTLS 162 (234)
T ss_dssp HHHHHHHTTTCSEEEEECCSSCCTTCCCHHHHHHHHHHHCTTCEEEEECS---SHHHHHH----HHHTTCS--EEECTTT
T ss_pred HHHHHHHHcCCCEEEEcccccCCCCCccHHHHHHHHHHhCCCCeEEEeCC---CHHHHHH----HHHcCCC--EEeeecc
Confidence 34566778899988766542 12 123567888898878888999875 5666433 3334443 44
Q ss_pred --e---cCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 263 --E---QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 263 --E---eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
+ +.....+++.++++.+ . ++||..+=.+.+.+++.++++.| +|.+.+
T Consensus 163 g~~~~~~~~~~~~~~~i~~~~~----~-~ipvia~GGI~s~~~~~~~~~~G-ad~v~v 214 (234)
T 1yxy_A 163 GYTPYSRQEAGPDVALIEALCK----A-GIAVIAEGKIHSPEEAKKINDLG-VAGIVV 214 (234)
T ss_dssp TSSTTSCCSSSCCHHHHHHHHH----T-TCCEEEESCCCSHHHHHHHHTTC-CSEEEE
T ss_pred ccCCCCcCCCCCCHHHHHHHHh----C-CCCEEEECCCCCHHHHHHHHHCC-CCEEEE
Confidence 1 2223446666777653 4 79999988999999999999987 688765
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=91.30 E-value=6 Score=36.36 Aligned_cols=123 Identities=16% Similarity=0.175 Sum_probs=82.3
Q ss_pred eeeecCCCHHHHHHHHHHHHH--cCCCeEEEecCCCh----hHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHH
Q 015289 179 DITIPIVSPAEAAELASKYRK--QGFTTLKLKVGKNL----KEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEK 251 (409)
Q Consensus 179 ~~~i~~~~~~~~~~~~~~~~~--~Gf~~~KiKvG~~~----~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~ 251 (409)
..+.+..+.+|.+..++-.++ -|-+-||+.|-.+. ..-.+.+++.++. -.++..+.-++.. ...+++
T Consensus 78 pNTag~~ta~eAv~~a~lare~~~~~~~iKlEv~~d~~~llpD~~~tv~aa~~L~~~Gf~Vlpy~~dd------~~~akr 151 (265)
T 1wv2_A 78 PNTAGCYDAVEAVRTCRLARELLDGHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSDD------PIIARQ 151 (265)
T ss_dssp EECTTCCSHHHHHHHHHHHHTTTTSCCEEEECCBSCTTTCCBCHHHHHHHHHHHHTTTCEEEEEECSC------HHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHcCCCCeEEEEeecCccccCcCHHHHHHHHHHHHHCCCEEEEEeCCC------HHHHHH
Confidence 456678888888776665555 36788999986221 2334445555554 3556655333332 346678
Q ss_pred HHhCCCCCceeecCCCC--------CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 252 LYEMGVTPVLFEQPVHR--------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 252 L~~~~l~~~~iEeP~~~--------~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
+++.+.. .+ .|... -|++-++.+.+ ..++||..+=.+.++.|+..+++.| +|.|.+
T Consensus 152 l~~~G~~--aV-mPlg~pIGsG~Gi~~~~lI~~I~e----~~~vPVI~eGGI~TPsDAa~AmeLG-AdgVlV 215 (265)
T 1wv2_A 152 LAEIGCI--AV-MPLAGLIGSGLGICNPYNLRIILE----EAKVPVLVDAGVGTASDAAIAMELG-CEAVLM 215 (265)
T ss_dssp HHHSCCS--EE-EECSSSTTCCCCCSCHHHHHHHHH----HCSSCBEEESCCCSHHHHHHHHHHT-CSEEEE
T ss_pred HHHhCCC--EE-EeCCccCCCCCCcCCHHHHHHHHh----cCCCCEEEeCCCCCHHHHHHHHHcC-CCEEEE
Confidence 8888854 66 34331 36777777764 5689999988999999999999998 587765
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=91.15 E-value=6.6 Score=34.15 Aligned_cols=144 Identities=13% Similarity=0.139 Sum_probs=89.3
Q ss_pred eeecCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhC-CCcEEEEeCCCCCCHHHHHHHHHHHHhCCCC
Q 015289 180 ITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-PDSSFILDANEGYKPQEAVEVLEKLYEMGVT 258 (409)
Q Consensus 180 ~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~-~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~ 258 (409)
..+...+++++.+.++.+.+.|+..+.+..+.+ .-.+.++.+|+.. ++..+.++ ...+++++.+..+ .+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~G~~~iev~~~~~--~~~~~i~~ir~~~~~~~~ig~~--~v~~~~~~~~a~~----~Gad 85 (205)
T 1wa3_A 14 AVLRANSVEEAKEKALAVFEGGVHLIEITFTVP--DADTVIKELSFLKEKGAIIGAG--TVTSVEQCRKAVE----SGAE 85 (205)
T ss_dssp EEECCSSHHHHHHHHHHHHHTTCCEEEEETTST--THHHHHHHTHHHHHTTCEEEEE--SCCSHHHHHHHHH----HTCS
T ss_pred EEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCh--hHHHHHHHHHHHCCCCcEEEec--ccCCHHHHHHHHH----cCCC
Confidence 344456788888888888889999998877642 2234577888874 46666665 3457777644333 4543
Q ss_pred CceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHc-CC
Q 015289 259 PVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRAS-GL 337 (409)
Q Consensus 259 ~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~-gi 337 (409)
++=.|... ..+-+.++ +.++|+.. .+.+..+..+.++.| +|++.+.+... .....+.++.+.. ++
T Consensus 86 --~iv~~~~~---~~~~~~~~----~~g~~vi~--g~~t~~e~~~a~~~G-ad~vk~~~~~~--~g~~~~~~l~~~~~~~ 151 (205)
T 1wa3_A 86 --FIVSPHLD---EEISQFCK----EKGVFYMP--GVMTPTELVKAMKLG-HTILKLFPGEV--VGPQFVKAMKGPFPNV 151 (205)
T ss_dssp --EEECSSCC---HHHHHHHH----HHTCEEEC--EECSHHHHHHHHHTT-CCEEEETTHHH--HHHHHHHHHHTTCTTC
T ss_pred --EEEcCCCC---HHHHHHHH----HcCCcEEC--CcCCHHHHHHHHHcC-CCEEEEcCccc--cCHHHHHHHHHhCCCC
Confidence 66334332 22333332 46899987 356788899998887 69987765322 1222333444555 78
Q ss_pred cEEEccCC
Q 015289 338 NLMIGGMV 345 (409)
Q Consensus 338 ~~~~~~~~ 345 (409)
+++..+-.
T Consensus 152 pvia~GGI 159 (205)
T 1wa3_A 152 KFVPTGGV 159 (205)
T ss_dssp EEEEBSSC
T ss_pred cEEEcCCC
Confidence 88875543
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=90.38 E-value=2.9 Score=39.36 Aligned_cols=122 Identities=16% Similarity=0.120 Sum_probs=84.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCC--------------ChhHHHHHHHHHHhh--CCCcEE--EEeCCCCCCHHHHHH
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGK--------------NLKEDIEVLRAIRAV--HPDSSF--ILDANEGYKPQEAVE 247 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~--------------~~~~d~~~l~avr~~--~~~~~l--~vDaN~~w~~~~A~~ 247 (409)
+++++.+-++++.+.|...+||.=+. +.++-+++|++++++ ++++.+ +.|+......+++++
T Consensus 92 ~~~~~~~~v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~~~~gl~~ai~ 171 (295)
T 1xg4_A 92 SAFNVARTVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIE 171 (295)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCHHHHCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHhhhcCHHHHHH
Confidence 78888888999999999999986431 234566789988886 456554 567654456799999
Q ss_pred HHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCC---CCHHHHHHHHHcCCCCEEEe
Q 015289 248 VLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESC---RSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 248 ~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~---~~~~~~~~~i~~~a~div~~ 315 (409)
.++.+++.|....|+|-+ + +.+..+++++ ...+|+...-.. .......++-+.| ++.+..
T Consensus 172 ra~ay~eAGAd~i~~e~~-~--~~~~~~~i~~----~~~iP~~~N~~~~g~~p~~~~~eL~~~G-~~~v~~ 234 (295)
T 1xg4_A 172 RAQAYVEAGAEMLFPEAI-T--ELAMYRQFAD----AVQVPILANITEFGATPLFTTDELRSAH-VAMALY 234 (295)
T ss_dssp HHHHHHHTTCSEEEETTC-C--SHHHHHHHHH----HHCSCBEEECCSSSSSCCCCHHHHHHTT-CSEEEE
T ss_pred HHHHHHHcCCCEEEEeCC-C--CHHHHHHHHH----HcCCCEEEEecccCCCCCCCHHHHHHcC-CCEEEE
Confidence 999999998777799974 2 4566777775 456888542221 1112345555666 566654
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=90.12 E-value=6.4 Score=36.53 Aligned_cols=118 Identities=11% Similarity=0.160 Sum_probs=82.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecC--------CChhHHHHHHHHHHhh----CCCcEE--EEeCCCC---C----CHHH
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVG--------KNLKEDIEVLRAIRAV----HPDSSF--ILDANEG---Y----KPQE 244 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG--------~~~~~d~~~l~avr~~----~~~~~l--~vDaN~~---w----~~~~ 244 (409)
+++++.+-++++.+.|...+||.=+ .+.++-+++|++++++ +.++.+ +-|+... . ..++
T Consensus 90 ~~~~~~~~v~~l~~aGaagv~iED~~~~~~k~l~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtda~~~~~g~~~~~~~~~ 169 (275)
T 2ze3_A 90 APEDVRRTVEHFAALGVAGVNLEDATGLTPTELYDLDSQLRRIEAARAAIDASGVPVFLNARTDTFLKGHGATDEERLAE 169 (275)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECBCSSSSSCBCCHHHHHHHHHHHHHHHHHHTSCCEEEEECCTTTTTCSSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcEEEECCCcCCCCCccCCHHHHHHHHHHHHHhHhhcCCCeEEEEechhhhccccccchhhHHH
Confidence 6888888899999999999999644 2455678889998886 666655 4566432 1 3789
Q ss_pred HHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCC--CCCCHHHHHHHHHcCCCCEEE
Q 015289 245 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE--SCRSLDDVKKIVKGNLADVIN 314 (409)
Q Consensus 245 A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dE--s~~~~~~~~~~i~~~a~div~ 314 (409)
+++.++.+.+.|....|+|-+ + +.+..+++++ ...+|+..-+ ...+ +.++-+.| +..+.
T Consensus 170 ai~Ra~ay~eAGAd~i~~e~~-~--~~~~~~~i~~----~~~~P~n~~~~~~~~~---~~eL~~lG-v~~v~ 230 (275)
T 2ze3_A 170 TVRRGQAYADAGADGIFVPLA-L--QSQDIRALAD----ALRVPLNVMAFPGSPV---PRALLDAG-AARVS 230 (275)
T ss_dssp HHHHHHHHHHTTCSEEECTTC-C--CHHHHHHHHH----HCSSCEEEECCTTSCC---HHHHHHTT-CSEEE
T ss_pred HHHHHHHHHHCCCCEEEECCC-C--CHHHHHHHHH----hcCCCEEEecCCCCCC---HHHHHHcC-CcEEE
Confidence 999999999988776789884 2 3455777775 4567875432 3333 44555666 45553
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=89.97 E-value=6.7 Score=36.94 Aligned_cols=145 Identities=18% Similarity=0.185 Sum_probs=94.6
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeEEEe--cC------------CChhHHHHHHHHHHhh----CCCcEE--EEeCCCCCCH
Q 015289 183 PIVSPAEAAELASKYRKQGFTTLKLK--VG------------KNLKEDIEVLRAIRAV----HPDSSF--ILDANEGYKP 242 (409)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~Gf~~~KiK--vG------------~~~~~d~~~l~avr~~----~~~~~l--~vDaN~~w~~ 242 (409)
+..+++++.+.++.+.+.|...+||. ++ .+.++-+++|++.+++ ++++-| |.|+......
T Consensus 90 Gyg~~~~v~~tv~~l~~aGaagv~iEDq~~~Krcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~~gl 169 (302)
T 3fa4_A 90 GYGGPIMVARTTEQYSRSGVAAFHIEDQVQTKRCGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIVVIARTDSLQTHGY 169 (302)
T ss_dssp TTSSHHHHHHHHHHHHHTTCCEEEECSBCCC-------CCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEEEECCHHHHCH
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCEEEEEEecccccCCH
Confidence 34578888888888999999999984 22 1456677889888764 577654 7898766789
Q ss_pred HHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeC--CC----CCCHHHHHHHHHcCCCCEEEeC
Q 015289 243 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD--ES----CRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 243 ~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~d--Es----~~~~~~~~~~i~~~a~div~~k 316 (409)
++|++.++...+.|-...|+|-+. +.+.++++++.+ .++|+... |. ..+. .++-+.| +.++..-
T Consensus 170 deAi~Ra~ay~eAGAD~ifi~g~~---~~~ei~~~~~~~---~~~Pl~~n~~~~g~~p~~~~---~eL~~lG-v~~v~~~ 239 (302)
T 3fa4_A 170 EESVARLRAARDAGADVGFLEGIT---SREMARQVIQDL---AGWPLLLNMVEHGATPSISA---AEAKEMG-FRIIIFP 239 (302)
T ss_dssp HHHHHHHHHHHTTTCSEEEETTCC---CHHHHHHHHHHT---TTSCEEEECCTTSSSCCCCH---HHHHHHT-CSEEEET
T ss_pred HHHHHHHHHHHHcCCCEEeecCCC---CHHHHHHHHHHh---cCCceeEEEecCCCCCCCCH---HHHHHcC-CCEEEEc
Confidence 999999999999887667898764 456677776532 14677553 21 2233 4445556 5766554
Q ss_pred CCCCc--HHHHHHHHHHHHHcCC
Q 015289 317 LAKVG--VLGALEIIEVVRASGL 337 (409)
Q Consensus 317 ~~~~G--i~~~~~i~~~A~~~gi 337 (409)
..-.. .....+.+.--++.|.
T Consensus 240 ~~~~raa~~A~~~~~~~i~~~g~ 262 (302)
T 3fa4_A 240 FAALGPAVAAMREAMEKLKRDGI 262 (302)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHHHHHHHHHHHcCC
Confidence 44332 2233444444444554
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=89.96 E-value=4.3 Score=35.85 Aligned_cols=108 Identities=15% Similarity=0.159 Sum_probs=70.9
Q ss_pred HHHHHHcCCCeEEEecCC--Ch-hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCcee--ecCC--
Q 015289 194 ASKYRKQGFTTLKLKVGK--NL-KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF--EQPV-- 266 (409)
Q Consensus 194 ~~~~~~~Gf~~~KiKvG~--~~-~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i--EeP~-- 266 (409)
++.+.+.|...+-+.... ++ ..-.+.++.+|+.+|+..+.+|.+ +.+++.+ +.+.+.. ++ --+.
T Consensus 81 i~~~~~~Gad~v~l~~~~~~~p~~~~~~~i~~~~~~~~~~~v~~~~~---t~~e~~~----~~~~G~d--~i~~~~~g~t 151 (223)
T 1y0e_A 81 VDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIA---TVEEAKN----AARLGFD--YIGTTLHGYT 151 (223)
T ss_dssp HHHHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEEEECS---SHHHHHH----HHHTTCS--EEECTTTTSS
T ss_pred HHHHHhCCCCEEEEeeecccCcccCHHHHHHHHHHhCCCceEEecCC---CHHHHHH----HHHcCCC--EEEeCCCcCc
Confidence 445567898888776542 22 233567888999878888988875 5666543 4555543 33 1110
Q ss_pred --------CCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 267 --------HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 267 --------~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
...+++.+++++ +..++||..+=.+.+..++.++++.| +|.+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~----~~~~ipvia~GGI~~~~~~~~~~~~G-ad~v~v 203 (223)
T 1y0e_A 152 SYTQGQLLYQNDFQFLKDVL----QSVDAKVIAEGNVITPDMYKRVMDLG-VHCSVV 203 (223)
T ss_dssp TTSTTCCTTHHHHHHHHHHH----HHCCSEEEEESSCCSHHHHHHHHHTT-CSEEEE
T ss_pred CCCCCCCCCcccHHHHHHHH----hhCCCCEEEecCCCCHHHHHHHHHcC-CCEEEE
Confidence 111233444444 35689999998999999999999988 788866
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=89.62 E-value=11 Score=37.37 Aligned_cols=81 Identities=10% Similarity=0.089 Sum_probs=56.3
Q ss_pred CcE-EEEeCCCCCCHHHHHHHHHHHHhCCCCCcee-------ecC----CCCC------------CHHHHHHhHHHhhcc
Q 015289 229 DSS-FILDANEGYKPQEAVEVLEKLYEMGVTPVLF-------EQP----VHRD------------DWEGLGHVSHIAKDK 284 (409)
Q Consensus 229 ~~~-l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i-------EeP----~~~~------------d~~~~~~l~~~~~~~ 284 (409)
+.. +.+=-...|+.++..++++.+++.++. +| .++ +... .++..++++ +.
T Consensus 296 ~~P~V~vKispd~~~ed~~~iA~~~~~aGaD--gI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~----~~ 369 (443)
T 1tv5_A 296 KKPLVFVKLAPDLNQEQKKEIADVLLETNID--GMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMY----NY 369 (443)
T ss_dssp SCCEEEEEECSCCCHHHHHHHHHHHHHTTCS--EEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHH----HH
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCC--EEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHH----HH
Confidence 455 666666668888888999999998764 33 211 0000 122334443 34
Q ss_pred C--CCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 285 F--GVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 285 ~--~ipIa~dEs~~~~~~~~~~i~~~a~div~~k 316 (409)
+ ++||.+.=.+.+..|+.++++.| +|.||+=
T Consensus 370 v~~~iPVIg~GGI~s~~DA~e~l~aG-Ad~Vqig 402 (443)
T 1tv5_A 370 TNKQIPIIASGGIFSGLDALEKIEAG-ASVCQLY 402 (443)
T ss_dssp TTTCSCEEEESSCCSHHHHHHHHHTT-EEEEEES
T ss_pred cCCCCcEEEECCCCCHHHHHHHHHcC-CCEEEEc
Confidence 5 79999999999999999999998 7999873
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=89.56 E-value=3.4 Score=39.25 Aligned_cols=132 Identities=16% Similarity=0.071 Sum_probs=87.6
Q ss_pred eeeeeee--cCCCHHHHHHHHHHHHHcCCCeEEEecC--------------CChhHHHHHHHHHHhhC--CCcEE--EEe
Q 015289 176 ITTDITI--PIVSPAEAAELASKYRKQGFTTLKLKVG--------------KNLKEDIEVLRAIRAVH--PDSSF--ILD 235 (409)
Q Consensus 176 i~~~~~i--~~~~~~~~~~~~~~~~~~Gf~~~KiKvG--------------~~~~~d~~~l~avr~~~--~~~~l--~vD 235 (409)
+|+-..+ +..+++++.+-++++.+.|...+||.=+ .+.++-+++|++++++. +++.| +-|
T Consensus 102 ~PviaD~d~Gyg~~~~v~~tv~~l~~aGaagv~iED~~~~k~cgH~~gk~L~p~~e~~~rI~Aa~~A~~~~~~~I~ARtd 181 (318)
T 1zlp_A 102 LCVVVDGDTGGGGPLNVQRFIRELISAGAKGVFLEDQVWPKKCGHMRGKAVVPAEEHALKIAAAREAIGDSDFFLVARTD 181 (318)
T ss_dssp SEEEEECTTCSSSHHHHHHHHHHHHHTTCCEEEEECBCSSCCCSSSSCCCBCCHHHHHHHHHHHHHHHTTSCCEEEEEEC
T ss_pred CCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCccccCCCCCccCCHHHHHHHHHHHHHhcccCCcEEEEeeH
Confidence 4444333 3448888888899999999999998532 13345677999999863 56555 567
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCC---CHHHHHHHHHcCCCCE
Q 015289 236 ANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCR---SLDDVKKIVKGNLADV 312 (409)
Q Consensus 236 aN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~---~~~~~~~~i~~~a~di 312 (409)
+......+++++.++.+++.|....|+|-+ + +.+..+++++ ...+|+...-... ...+..++-+.| +..
T Consensus 182 a~a~~gl~~ai~Ra~Ay~eAGAd~i~~e~~-~--~~e~~~~i~~----~l~~P~lan~~~~g~~~~~~~~eL~~lG-v~~ 253 (318)
T 1zlp_A 182 ARAPHGLEEGIRRANLYKEAGADATFVEAP-A--NVDELKEVSA----KTKGLRIANMIEGGKTPLHTPEEFKEMG-FHL 253 (318)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCSEEEECCC-C--SHHHHHHHHH----HSCSEEEEEECTTSSSCCCCHHHHHHHT-CCE
T ss_pred HhhhcCHHHHHHHHHHHHHcCCCEEEEcCC-C--CHHHHHHHHH----hcCCCEEEEeccCCCCCCCCHHHHHHcC-CeE
Confidence 764445689999999999998776799975 2 4566777775 5679985432211 112344555666 455
Q ss_pred EEe
Q 015289 313 INI 315 (409)
Q Consensus 313 v~~ 315 (409)
+..
T Consensus 254 v~~ 256 (318)
T 1zlp_A 254 IAH 256 (318)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
|
| >4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=89.45 E-value=3.8 Score=39.52 Aligned_cols=120 Identities=13% Similarity=0.201 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHcCCCeEEEecCC---------------------Ch----hHHHHHHHHHHhh-CCC-cEEEEeCCC---
Q 015289 189 EAAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPD-SSFILDANE--- 238 (409)
Q Consensus 189 ~~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~d~~~l~avr~~-~~~-~~l~vDaN~--- 238 (409)
+.++.++++++.||..|.|+.+. ++ +--++.+++||++ +++ +.+++-++.
T Consensus 153 ~F~~AA~rA~~AGFDgVEIH~ahGYLl~QFLSp~tN~RtDeYGGS~eNR~Rf~~Eii~avr~~vg~~~v~vRls~~~~~~ 232 (358)
T 4a3u_A 153 DYEKAARHALKAGFDGVQIHAANGYLIDEFIRDSTNHRHDEYGGAVENRIRLLKDVTERVIATIGKERTAVRLSPNGEIQ 232 (358)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECCSSCBT
T ss_pred HHHHHHHHHHHcCCCeEeecccCCCcHHhceecccCCeeCCCCCCHHHHHHHHHHHHHHHHHHcCccceEEEeccCcccC
Confidence 34566778888999999999751 11 2346788999997 665 345565432
Q ss_pred -CC---CHHHHHHHHHHHHhCCCCCceee-------cCCCCCCH-HHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHH
Q 015289 239 -GY---KPQEAVEVLEKLYEMGVTPVLFE-------QPVHRDDW-EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVK 306 (409)
Q Consensus 239 -~w---~~~~A~~~~~~L~~~~l~~~~iE-------eP~~~~d~-~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~ 306 (409)
.+ +.++.+..++.+.+.++. +++ .+....+. .-.++++ +....||+.+- ..+++...++++
T Consensus 233 g~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~a~~ik----~~~~~~v~~~g-~~~~~~ae~~l~ 305 (358)
T 4a3u_A 233 GTVDSHPEQVFIPAAKMLSDLDIA--FLGMREGAVDGTFGKTDQPKLSPEIR----KVFKPPLVLNQ-DYTFETAQAALD 305 (358)
T ss_dssp TBCCSSTHHHHHHHHHHHHHHTCS--EEEEECCBTTCSSSBCSSCCCHHHHH----HHCCSCEEEES-SCCHHHHHHHHH
T ss_pred CCcccchHHHHHHHHHhhhccCcc--ccccccccccCcccccccHHHHHHHH----HhcCCcEEEeC-CCCHHHHHHHHH
Confidence 22 345566778888887653 432 12221111 1122333 34567888764 578999999999
Q ss_pred cCCCCEEEe
Q 015289 307 GNLADVINI 315 (409)
Q Consensus 307 ~~a~div~~ 315 (409)
.|.+|.|-+
T Consensus 306 ~G~aD~V~~ 314 (358)
T 4a3u_A 306 SGVADAISF 314 (358)
T ss_dssp HTSCSEEEE
T ss_pred cCCceEeHh
Confidence 999999743
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=89.39 E-value=2 Score=38.62 Aligned_cols=121 Identities=18% Similarity=0.242 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHcCCCeEEE--ecC----CChhHHHHHHHHHHhhCCCcE--EEEeCCCCCCHHHHHHHHHHHHhCCCC
Q 015289 187 PAEAAELASKYRKQGFTTLKL--KVG----KNLKEDIEVLRAIRAVHPDSS--FILDANEGYKPQEAVEVLEKLYEMGVT 258 (409)
Q Consensus 187 ~~~~~~~~~~~~~~Gf~~~Ki--KvG----~~~~~d~~~l~avr~~~~~~~--l~vDaN~~w~~~~A~~~~~~L~~~~l~ 258 (409)
...-..+++++.+.|+..+.+ .+| .+.+.-.+.++++++..+.+. +++.. ..|+.++..+.++.+.+.|..
T Consensus 69 ~~~k~~~~~~A~~~Gad~Id~viN~g~~~~~~~~~~~~~i~~v~~a~~pv~vKvi~e~-~~l~~~~~~~~a~~a~eaGad 147 (225)
T 1mzh_A 69 TSVKVKEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETPSAVHKVIVET-PYLNEEEIKKAVEICIEAGAD 147 (225)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCTTSEEEEECCG-GGCCHHHHHHHHHHHHHHTCS
T ss_pred hhhhHHHHHHHHHcCCCEEEEEecHHHHhcCChHHHHHHHHHHHHHhcCceEEEEEeC-CCCCHHHHHHHHHHHHHhCCC
Confidence 444445567778899999995 444 233444556888888742343 33332 458998888999999998875
Q ss_pred CceeecCC----CCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEE
Q 015289 259 PVLFEQPV----HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 313 (409)
Q Consensus 259 ~~~iEeP~----~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div 313 (409)
++-=-. ..-+++..+.+++.. ...+||.+.=-+.+.+++.++++.| +|.+
T Consensus 148 --~I~tstg~~~gga~~~~i~~v~~~v--~~~ipVia~GGI~t~~da~~~l~aG-A~~i 201 (225)
T 1mzh_A 148 --FIKTSTGFAPRGTTLEEVRLIKSSA--KGRIKVKASGGIRDLETAISMIEAG-ADRI 201 (225)
T ss_dssp --EEECCCSCSSSCCCHHHHHHHHHHH--TTSSEEEEESSCCSHHHHHHHHHTT-CSEE
T ss_pred --EEEECCCCCCCCCCHHHHHHHHHHh--CCCCcEEEECCCCCHHHHHHHHHhC-chHH
Confidence 774222 112566667666422 1268998887889999999999987 5743
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=89.19 E-value=12 Score=33.68 Aligned_cols=141 Identities=14% Similarity=0.235 Sum_probs=94.9
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCcee
Q 015289 183 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 262 (409)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i 262 (409)
-..+++++.+.++.+++-|++.+.+..-. ....+.++++|+.+|++.+-. ..-.+.+++...++ .|.. |+
T Consensus 41 r~~~~~~a~~~a~al~~gGi~~iEvt~~t--~~a~e~I~~l~~~~~~~~iGa--GTVlt~~~a~~Ai~----AGA~--fI 110 (232)
T 4e38_A 41 AIDNAEDIIPLGKVLAENGLPAAEITFRS--DAAVEAIRLLRQAQPEMLIGA--GTILNGEQALAAKE----AGAT--FV 110 (232)
T ss_dssp CCSSGGGHHHHHHHHHHTTCCEEEEETTS--TTHHHHHHHHHHHCTTCEEEE--ECCCSHHHHHHHHH----HTCS--EE
T ss_pred EcCCHHHHHHHHHHHHHCCCCEEEEeCCC--CCHHHHHHHHHHhCCCCEEeE--CCcCCHHHHHHHHH----cCCC--EE
Confidence 34578888999999999999999997753 234677888888888755544 44678777644433 4543 66
Q ss_pred ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-CcHHHHHHHHHHHHHc-CCcEE
Q 015289 263 EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALEIIEVVRAS-GLNLM 340 (409)
Q Consensus 263 EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~-~Gi~~~~~i~~~A~~~-gi~~~ 340 (409)
=-|. .|.+-.+. ++ +.++|+..| +.++.++.+.++.| +|++.+=|+. .|..+.++ ++...+ +++++
T Consensus 111 vsP~--~~~~vi~~-~~----~~gi~~ipG--v~TptEi~~A~~~G-ad~vK~FPa~~~gG~~~lk--al~~p~p~ip~~ 178 (232)
T 4e38_A 111 VSPG--FNPNTVRA-CQ----EIGIDIVPG--VNNPSTVEAALEMG-LTTLKFFPAEASGGISMVK--SLVGPYGDIRLM 178 (232)
T ss_dssp ECSS--CCHHHHHH-HH----HHTCEEECE--ECSHHHHHHHHHTT-CCEEEECSTTTTTHHHHHH--HHHTTCTTCEEE
T ss_pred EeCC--CCHHHHHH-HH----HcCCCEEcC--CCCHHHHHHHHHcC-CCEEEECcCccccCHHHHH--HHHHHhcCCCee
Confidence 5564 34433333 22 458999887 77999999999988 6999887754 34223332 333344 68998
Q ss_pred EccCC
Q 015289 341 IGGMV 345 (409)
Q Consensus 341 ~~~~~ 345 (409)
+-+-+
T Consensus 179 ptGGI 183 (232)
T 4e38_A 179 PTGGI 183 (232)
T ss_dssp EBSSC
T ss_pred eEcCC
Confidence 86544
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=89.14 E-value=4.1 Score=38.46 Aligned_cols=123 Identities=16% Similarity=0.100 Sum_probs=84.1
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeEEEecC--------------CChhHHHHHHHHHHhh----CCCcEE--EEeCCCCCCH
Q 015289 183 PIVSPAEAAELASKYRKQGFTTLKLKVG--------------KNLKEDIEVLRAIRAV----HPDSSF--ILDANEGYKP 242 (409)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG--------------~~~~~d~~~l~avr~~----~~~~~l--~vDaN~~w~~ 242 (409)
+..+++++.+.++.+.+.|...+||.=. .+.++-+++|++.+++ ++++.| |.|+......
T Consensus 98 Gyg~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~~gl 177 (307)
T 3lye_A 98 GYGGPIMVARTVEHYIRSGVAGAHLEDQILTKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLRSDFVLIARTDALQSLGY 177 (307)
T ss_dssp CSSSHHHHHHHHHHHHHTTCCEEEECCBCCCC--------CBCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECCHHHHCH
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEcCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEechhhhccCH
Confidence 3457888888889999999999998421 1345556888888764 567655 6898766679
Q ss_pred HHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeC--CC----CCCHHHHHHHHHcCCCCEEEe
Q 015289 243 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD--ES----CRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 243 ~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~d--Es----~~~~~~~~~~i~~~a~div~~ 315 (409)
++|++.++...+.|-...|+|-+- +.+.++++++.+. ++|+... |. ..+. .++-+.| +.++..
T Consensus 178 deAi~Ra~ay~eAGAD~ifi~~~~---~~~~~~~i~~~~~---~~Pv~~n~~~~g~~p~~t~---~eL~~lG-v~~v~~ 246 (307)
T 3lye_A 178 EECIERLRAARDEGADVGLLEGFR---SKEQAAAAVAALA---PWPLLLNSVENGHSPLITV---EEAKAMG-FRIMIF 246 (307)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCCS---CHHHHHHHHHHHT---TSCBEEEEETTSSSCCCCH---HHHHHHT-CSEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEecCCC---CHHHHHHHHHHcc---CCceeEEeecCCCCCCCCH---HHHHHcC-CeEEEE
Confidence 999999999999887767998653 4566777776331 3676442 21 2344 4445556 466644
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=89.09 E-value=3.5 Score=35.98 Aligned_cols=94 Identities=24% Similarity=0.286 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCceeecCCCCCC-HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 015289 240 YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (409)
Q Consensus 240 w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~ 318 (409)
.+.+++.++++.+.+.++. ++|=-+...+ .+.++++++... .+.+|..| ++.++.++..+++.| +|++ +-+.
T Consensus 19 ~~~~~~~~~~~~~~~~G~~--~iev~~~~~~~~~~i~~ir~~~~--~~~~ig~~-~v~~~~~~~~a~~~G-ad~i-v~~~ 91 (205)
T 1wa3_A 19 NSVEEAKEKALAVFEGGVH--LIEITFTVPDADTVIKELSFLKE--KGAIIGAG-TVTSVEQCRKAVESG-AEFI-VSPH 91 (205)
T ss_dssp SSHHHHHHHHHHHHHTTCC--EEEEETTSTTHHHHHHHTHHHHH--TTCEEEEE-SCCSHHHHHHHHHHT-CSEE-ECSS
T ss_pred CCHHHHHHHHHHHHHCCCC--EEEEeCCChhHHHHHHHHHHHCC--CCcEEEec-ccCCHHHHHHHHHcC-CCEE-EcCC
Confidence 3688999999999999875 8874333322 223555543211 14777776 467889999888887 6998 5443
Q ss_pred CCcHHHHHHHHHHHHHcCCcEEEccCC
Q 015289 319 KVGVLGALEIIEVVRASGLNLMIGGMV 345 (409)
Q Consensus 319 ~~Gi~~~~~i~~~A~~~gi~~~~~~~~ 345 (409)
.. ..+++.|+++|++++++.+.
T Consensus 92 ~~-----~~~~~~~~~~g~~vi~g~~t 113 (205)
T 1wa3_A 92 LD-----EEISQFCKEKGVFYMPGVMT 113 (205)
T ss_dssp CC-----HHHHHHHHHHTCEEECEECS
T ss_pred CC-----HHHHHHHHHcCCcEECCcCC
Confidence 32 35678888999999997654
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=88.04 E-value=4.9 Score=38.97 Aligned_cols=125 Identities=12% Similarity=0.130 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecC-C---------ChhHHHHHHHHHHhh---C---CCcEEEEeCCCCCCHHHHHHHH
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVG-K---------NLKEDIEVLRAIRAV---H---PDSSFILDANEGYKPQEAVEVL 249 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG-~---------~~~~d~~~l~avr~~---~---~~~~l~vDaN~~w~~~~A~~~~ 249 (409)
+++++++.++.+. .+...+-+.++ + +.+.-.+.+++++++ . .+..+.|=-.-.++.++..+++
T Consensus 162 ~~~dy~~~~~~~~-~~ad~ielNisCPn~~G~~~l~~~~~l~~ll~av~~~~~~~~~~~~~Pv~vKi~p~~~~~~~~~ia 240 (367)
T 3zwt_A 162 AAEDYAEGVRVLG-PLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIA 240 (367)
T ss_dssp HHHHHHHHHHHHG-GGCSEEEEECCCTTSTTGGGGGSHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHh-hhCCEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHhhccccCCceEEEEeCCCCCHHHHHHHH
Confidence 5677777666553 45688999887 1 122223456666553 1 3567777777778888888999
Q ss_pred HHHHhCCCCCce-----eecC-----CCC-------------CCHHHHHHhHHHhhccC--CCeEEeCCCCCCHHHHHHH
Q 015289 250 EKLYEMGVTPVL-----FEQP-----VHR-------------DDWEGLGHVSHIAKDKF--GVSVAADESCRSLDDVKKI 304 (409)
Q Consensus 250 ~~L~~~~l~~~~-----iEeP-----~~~-------------~d~~~~~~l~~~~~~~~--~ipIa~dEs~~~~~~~~~~ 304 (409)
+.+++.++.-.. +..+ ... -.++..+++++ .. .+||.+.=.+.+.+|+.++
T Consensus 241 ~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~----~v~~~ipvI~~GGI~s~~da~~~ 316 (367)
T 3zwt_A 241 SVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYA----LTQGRVPIIGVGGVSSGQDALEK 316 (367)
T ss_dssp HHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHH----HTTTCSCEEEESSCCSHHHHHHH
T ss_pred HHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHH----HcCCCceEEEECCCCCHHHHHHH
Confidence 999987754111 1221 000 01233444443 45 6999999999999999999
Q ss_pred HHcCCCCEEEeC
Q 015289 305 VKGNLADVINIK 316 (409)
Q Consensus 305 i~~~a~div~~k 316 (409)
++.| +|.|++=
T Consensus 317 l~~G-Ad~V~vg 327 (367)
T 3zwt_A 317 IRAG-ASLVQLY 327 (367)
T ss_dssp HHHT-CSEEEES
T ss_pred HHcC-CCEEEEC
Confidence 9988 5999873
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=87.60 E-value=13 Score=34.68 Aligned_cols=104 Identities=15% Similarity=0.149 Sum_probs=75.7
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeEEEecCC----------------ChhHHHHHHHHHHhhC--CCcEE--EEeCC-CCCC
Q 015289 183 PIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVH--PDSSF--ILDAN-EGYK 241 (409)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~d~~~l~avr~~~--~~~~l--~vDaN-~~w~ 241 (409)
+..+++++.+-++++.+.|...+||.=+. +.++-+++|++++++. +++.| +-|+. ....
T Consensus 85 Gyg~~~~~~~~v~~l~~aGa~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtda~~a~~g 164 (290)
T 2hjp_A 85 GFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLG 164 (290)
T ss_dssp TTSSHHHHHHHHHHHHHHTCSEEEEECBCSSCCC-------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTTTTTCC
T ss_pred CCCCHHHHHHHHHHHHHhCCeEEEEcCCCCCccccccccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHhhcccc
Confidence 34488888888999999999999985331 1224478899998873 55555 57877 6677
Q ss_pred HHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCC--CeEEeC
Q 015289 242 PQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG--VSVAAD 292 (409)
Q Consensus 242 ~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~--ipIa~d 292 (409)
.+++++.++.+.+.|....|+|--++ +.+..+++++ ... +|+...
T Consensus 165 ~~~ai~Ra~ay~eAGAd~i~~e~~~~--~~~~~~~i~~----~~~~~vP~i~n 211 (290)
T 2hjp_A 165 QQEAVRRGQAYEEAGADAILIHSRQK--TPDEILAFVK----SWPGKVPLVLV 211 (290)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCCS--SSHHHHHHHH----HCCCSSCEEEC
T ss_pred HHHHHHHHHHHHHcCCcEEEeCCCCC--CHHHHHHHHH----HcCCCCCEEEe
Confidence 99999999999999877679997233 2244577765 345 898864
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=87.51 E-value=15 Score=32.78 Aligned_cols=139 Identities=12% Similarity=0.108 Sum_probs=88.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceee
Q 015289 184 IVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 263 (409)
Q Consensus 184 ~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE 263 (409)
..++++..+.++.+.+-|.+.+.+..-. ....+.++.+++.++++.+..+. -.+.+++...+. .|-. ++=
T Consensus 34 ~~~~~~~~~~~~al~~gGv~~iel~~k~--~~~~~~i~~l~~~~~~~~igagt--vl~~d~~~~A~~----aGAd--~v~ 103 (225)
T 1mxs_A 34 IAREEDILPLADALAAGGIRTLEVTLRS--QHGLKAIQVLREQRPELCVGAGT--VLDRSMFAAVEA----AGAQ--FVV 103 (225)
T ss_dssp CSCGGGHHHHHHHHHHTTCCEEEEESSS--THHHHHHHHHHHHCTTSEEEEEC--CCSHHHHHHHHH----HTCS--SEE
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCC--ccHHHHHHHHHHhCcccEEeeCe--EeeHHHHHHHHH----CCCC--EEE
Confidence 4467778888899999999999988643 34556788888888887666654 567766533332 2322 443
Q ss_pred cCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-CcHHHHHHHHHHHHHc-CCcEEE
Q 015289 264 QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALEIIEVVRAS-GLNLMI 341 (409)
Q Consensus 264 eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~-~Gi~~~~~i~~~A~~~-gi~~~~ 341 (409)
-| ..|.+ ..+.+ ++.++++..| +.++.++.+..+.| +|++.+=+.. .| +.-.+.++.... ++++++
T Consensus 104 ~p--~~d~~-v~~~~----~~~g~~~i~G--~~t~~e~~~A~~~G-ad~vk~FPa~~~~--G~~~lk~i~~~~~~ipvva 171 (225)
T 1mxs_A 104 TP--GITED-ILEAG----VDSEIPLLPG--ISTPSEIMMGYALG-YRRFKLFPAEISG--GVAAIKAFGGPFGDIRFCP 171 (225)
T ss_dssp CS--SCCHH-HHHHH----HHCSSCEECE--ECSHHHHHHHHTTT-CCEEEETTHHHHT--HHHHHHHHHTTTTTCEEEE
T ss_pred eC--CCCHH-HHHHH----HHhCCCEEEe--eCCHHHHHHHHHCC-CCEEEEccCcccc--CHHHHHHHHhhCCCCeEEE
Confidence 33 34543 33333 2468888876 89999999988877 6998884421 21 122233455556 789886
Q ss_pred ccC
Q 015289 342 GGM 344 (409)
Q Consensus 342 ~~~ 344 (409)
-+-
T Consensus 172 iGG 174 (225)
T 1mxs_A 172 TGG 174 (225)
T ss_dssp BSS
T ss_pred ECC
Confidence 543
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=87.40 E-value=6.8 Score=35.92 Aligned_cols=80 Identities=18% Similarity=0.242 Sum_probs=48.2
Q ss_pred eeeecCCCHHHHHHHHHHHHHcCCCeEEEecCC-C---------------------hhHHHHHHHHHHhhCCCcEEEE--
Q 015289 179 DITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-N---------------------LKEDIEVLRAIRAVHPDSSFIL-- 234 (409)
Q Consensus 179 ~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~-~---------------------~~~d~~~l~avr~~~~~~~l~v-- 234 (409)
|.+.+.-+.++..+.++.+.+.|...+.+-+-. | ++.-.+.++++|+..|++.+.+
T Consensus 22 ~i~~g~p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~ 101 (262)
T 2ekc_A 22 YLMVGYPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMT 101 (262)
T ss_dssp EEETTSSCHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEC
T ss_pred EecCCCCChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEe
Confidence 444455566677777788888888888876521 1 1122345677776654555544
Q ss_pred eCCC------------------------CCCHHHHHHHHHHHHhCCCC
Q 015289 235 DANE------------------------GYKPQEAVEVLEKLYEMGVT 258 (409)
Q Consensus 235 DaN~------------------------~w~~~~A~~~~~~L~~~~l~ 258 (409)
+.|. ....++..++.+.++++++.
T Consensus 102 y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~~~~gl~ 149 (262)
T 2ekc_A 102 YYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVMKKYVLS 149 (262)
T ss_dssp CHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHTTCE
T ss_pred cCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCc
Confidence 3331 12356777788888888754
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=87.39 E-value=1.6 Score=39.50 Aligned_cols=153 Identities=14% Similarity=0.088 Sum_probs=87.1
Q ss_pred eeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhh-CCC-cEEEEeCC---C-------CCCH--
Q 015289 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPD-SSFILDAN---E-------GYKP-- 242 (409)
Q Consensus 177 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~-~~~-~~l~vDaN---~-------~w~~-- 242 (409)
|+-...++.++++ ++.+.+.|...+ -+|...-.+.+.+..+++. +.+ +.+.+|+. + +|..
T Consensus 76 pvi~~ggI~~~~~----~~~~~~~Gad~V--~lg~~~l~~p~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~g~~~~~ 149 (253)
T 1thf_D 76 PFTVGGGIHDFET----ASELILRGADKV--SINTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNT 149 (253)
T ss_dssp CEEEESSCCSHHH----HHHHHHTTCSEE--EESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEE
T ss_pred CEEEeCCCCCHHH----HHHHHHcCCCEE--EEChHHHhChHHHHHHHHHcCCCcEEEEEEEEccCCcEEEEECCCcccc
Confidence 3333444556654 444556786654 5663222334456555554 544 46888984 2 3421
Q ss_pred -HHHHHHHHHHHhCCCCCceee-----cCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 243 -QEAVEVLEKLYEMGVTPVLFE-----QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 243 -~~A~~~~~~L~~~~l~~~~iE-----eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k 316 (409)
....++++.+.+.++....+= .....-|++.++++++ .+++||.++=-+.++.++.++.+.| +|.+.+=
T Consensus 150 ~~~~~e~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~~~~l~~----~~~ipvia~GGI~~~~d~~~~~~~G-adgv~vG 224 (253)
T 1thf_D 150 GILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRP----LTTLPIIASGGAGKMEHFLEAFLAG-ADAALAA 224 (253)
T ss_dssp EEEHHHHHHHHHHTTCSEEEEEETTTTTSCSCCCHHHHHHHGG----GCCSCEEEESCCCSHHHHHHHHHTT-CSEEEES
T ss_pred CCCHHHHHHHHHHCCCCEEEEEeccCCCCCCCCCHHHHHHHHH----hcCCCEEEECCCCCHHHHHHHHHcC-ChHHHHH
Confidence 123456666777765422331 1112236777777753 5689999998899999999999866 6777552
Q ss_pred CCCCc-HHHHHHHHHHHHHcCCcEE
Q 015289 317 LAKVG-VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 317 ~~~~G-i~~~~~i~~~A~~~gi~~~ 340 (409)
-.-.+ -....++.+..++.|+++-
T Consensus 225 sal~~~~~~~~~~~~~l~~~g~~~~ 249 (253)
T 1thf_D 225 SVFHFREIDVRELKEYLKKHGVNVR 249 (253)
T ss_dssp HHHHTTCSCHHHHHHHHHHTTCCCC
T ss_pred HHHHcCCCCHHHHHHHHHHcCCccc
Confidence 11111 1023355566678888653
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=86.99 E-value=6.8 Score=38.59 Aligned_cols=134 Identities=8% Similarity=0.066 Sum_probs=84.5
Q ss_pred eeeeeecCCC-----HHHHHHHHHHHHHcCCCeEEEecC-C---------ChhHHHHHHHHHHhhC--------------
Q 015289 177 TTDITIPIVS-----PAEAAELASKYRKQGFTTLKLKVG-K---------NLKEDIEVLRAIRAVH-------------- 227 (409)
Q Consensus 177 ~~~~~i~~~~-----~~~~~~~~~~~~~~Gf~~~KiKvG-~---------~~~~d~~~l~avr~~~-------------- 227 (409)
++..+++... ++++.+.++.+... ...+-+.++ + +.+.-.+.+++|++..
T Consensus 183 ~vgvnIg~nk~t~~~~~Dy~~~a~~l~~~-ad~ieiNiScPNt~Gl~~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~~~~ 261 (415)
T 3i65_A 183 IVGVSIGKNKDTVNIVDDLKYCINKIGRY-ADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDEFL 261 (415)
T ss_dssp EEEEEECCCTTCSCHHHHHHHHHHHHGGG-CSEEEEECCCCC--------CCHHHHHHHHHHHHHHHHHHHHCCSCHHHH
T ss_pred eEEEEeccccCccccHHHHHHHHHHHHhh-CCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 4445554433 56776666665443 778888886 1 2333345566666641
Q ss_pred -----CCcE-EEEeCCCCCCHHHHHHHHHHHHhCCCCCce-----eecC----------------CCCCCHHHHHHhHHH
Q 015289 228 -----PDSS-FILDANEGYKPQEAVEVLEKLYEMGVTPVL-----FEQP----------------VHRDDWEGLGHVSHI 280 (409)
Q Consensus 228 -----~~~~-l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~-----iEeP----------------~~~~d~~~~~~l~~~ 280 (409)
.+.. +.|=-.-.|+.++..++++.+++.++.-.. .++. +.+-.++.++++++
T Consensus 262 ~~~~~~~~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~- 340 (415)
T 3i65_A 262 WFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYN- 340 (415)
T ss_dssp CCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHH-
T ss_pred ccccCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHHH-
Confidence 2456 677777778888888899999887653111 1211 00000123444443
Q ss_pred hhccC--CCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 281 AKDKF--GVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 281 ~~~~~--~ipIa~dEs~~~~~~~~~~i~~~a~div~~k 316 (409)
.+ .+||...=.+.+.+|+.++++.| +|.||+=
T Consensus 341 ---~v~~~iPIIg~GGI~s~eDa~e~l~aG-Ad~VqIg 374 (415)
T 3i65_A 341 ---YTNKQIPIIASGGIFSGLDALEKIEAG-ASVCQLY 374 (415)
T ss_dssp ---HTTTCSCEEECSSCCSHHHHHHHHHHT-EEEEEES
T ss_pred ---HhCCCCCEEEECCCCCHHHHHHHHHcC-CCEEEEc
Confidence 44 69999999999999999999988 4999873
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=86.37 E-value=17 Score=33.92 Aligned_cols=141 Identities=16% Similarity=0.226 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecC------CChhHHHHHHHHHHhh-C-CCcEEEEeCCCCCCHHHHHHHHHHHHhCCC
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVG------KNLKEDIEVLRAIRAV-H-PDSSFILDANEGYKPQEAVEVLEKLYEMGV 257 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG------~~~~~d~~~l~avr~~-~-~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l 257 (409)
+.+.-..+++++++.|-..+-+-+. .+.+.-.+-+++|+++ . +-+++++... -++.++-.+.++...+.|.
T Consensus 124 ~~~~Kv~Ea~~Ai~~GAdEIDmVINig~lk~g~~~~v~~eI~~V~~a~~~~~lKVIlEt~-~Lt~eei~~A~~ia~eaGA 202 (288)
T 3oa3_A 124 STDQKVSEAKRAMQNGASELDMVMNYPWLSEKRYTDVFQDIRAVRLAAKDAILKVILETS-QLTADEIIAGCVLSSLAGA 202 (288)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGG-GCCHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEeehhhhcCCcHHHHHHHHHHHHHHhcCCCceEEEECC-CCCHHHHHHHHHHHHHcCC
Confidence 4454567788899999999996553 3444445567777876 3 3367787765 5688886666777778886
Q ss_pred CCceeecCCCC-------CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCcHHHHHHHHH
Q 015289 258 TPVLFEQPVHR-------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIE 330 (409)
Q Consensus 258 ~~~~iEeP~~~-------~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~Gi~~~~~i~~ 330 (409)
. ||=-..-. +|...++++.+.. ...++|-.-=-+.+..++..+++.|+ + ++|....++|.+
T Consensus 203 D--fVKTSTGf~~~GAT~edv~lmr~~v~~~--g~~v~VKAAGGIrt~edAl~mi~aGA-~-------RiGtS~g~~I~~ 270 (288)
T 3oa3_A 203 D--YVKTSTGFNGPGASIENVSLMSAVCDSL--QSETRVKASGGIRTIEDCVKMVRAGA-E-------RLGASAGVKIVN 270 (288)
T ss_dssp S--EEECCCSSSSCCCCHHHHHHHHHHHHHS--SSCCEEEEESSCCSHHHHHHHHHTTC-S-------EEEESCHHHHHH
T ss_pred C--EEEcCCCCCCCCCCHHHHHHHHHHHHHh--CCCceEEEeCCCCCHHHHHHHHHcCC-c-------eeehhhHHHHHH
Confidence 4 88665321 2455555543210 12455544335889999999999986 3 568777788888
Q ss_pred HHHHcCCcE
Q 015289 331 VVRASGLNL 339 (409)
Q Consensus 331 ~A~~~gi~~ 339 (409)
-++..|+..
T Consensus 271 ~~~~~~~~~ 279 (288)
T 3oa3_A 271 ETRLGNRQV 279 (288)
T ss_dssp HHTC-----
T ss_pred HHHhcCCCC
Confidence 887777754
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=86.04 E-value=9.9 Score=38.25 Aligned_cols=118 Identities=19% Similarity=0.235 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHcCCCeEEEecCC-ChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeec---
Q 015289 189 EAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ--- 264 (409)
Q Consensus 189 ~~~~~~~~~~~~Gf~~~KiKvG~-~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEe--- 264 (409)
+..+.++.+.+.|...+-+.... ....-.+.++.+|+..|++.+.+ ...-+.++| +.+.+.|.. +|==
T Consensus 229 ~~~~~a~~l~~aG~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~--g~v~t~e~a----~~l~~aGaD--~I~vg~g 300 (490)
T 4avf_A 229 DTGERVAALVAAGVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIG--GNIATAEAA----KALAEAGAD--AVKVGIG 300 (490)
T ss_dssp THHHHHHHHHHTTCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEE--EEECSHHHH----HHHHHTTCS--EEEECSS
T ss_pred chHHHHHHHhhcccceEEecccCCcchhHHHHHHHHHHHCCCceEEE--eeeCcHHHH----HHHHHcCCC--EEEECCC
Confidence 34566777888899999887663 33456788999999888887776 113456654 455666654 3320
Q ss_pred C-----------CCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 265 P-----------VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 265 P-----------~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k 316 (409)
| +..-++..+.++.+.++ ..++||.++=-+.+..|+.++++.|+ |.+++=
T Consensus 301 ~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~-~~~iPVIa~GGI~~~~di~kal~~GA-d~V~vG 361 (490)
T 4avf_A 301 PGSICTTRIVAGVGVPQISAIANVAAALE-GTGVPLIADGGIRFSGDLAKAMVAGA-YCVMMG 361 (490)
T ss_dssp CSTTCHHHHHTCBCCCHHHHHHHHHHHHT-TTTCCEEEESCCCSHHHHHHHHHHTC-SEEEEC
T ss_pred CCcCCCccccCCCCccHHHHHHHHHHHhc-cCCCcEEEeCCCCCHHHHHHHHHcCC-Ceeeec
Confidence 1 11224566667665432 45899999999999999999999984 888764
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=85.07 E-value=21 Score=31.91 Aligned_cols=139 Identities=12% Similarity=0.173 Sum_probs=89.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceee
Q 015289 184 IVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 263 (409)
Q Consensus 184 ~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE 263 (409)
..++++..+.++.+.+-|.+.+.+..-. ....+.++.+++.++++.+..+. -.+.+++...+ +.+.. ++=
T Consensus 25 ~~~~~~~~~~~~al~~gGv~~iel~~k~--~~~~~~i~~l~~~~~~l~vgaGt--vl~~d~~~~A~----~aGAd--~v~ 94 (224)
T 1vhc_A 25 LDNADDILPLADTLAKNGLSVAEITFRS--EAAADAIRLLRANRPDFLIAAGT--VLTAEQVVLAK----SSGAD--FVV 94 (224)
T ss_dssp CSSGGGHHHHHHHHHHTTCCEEEEETTS--TTHHHHHHHHHHHCTTCEEEEES--CCSHHHHHHHH----HHTCS--EEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeccC--chHHHHHHHHHHhCcCcEEeeCc--EeeHHHHHHHH----HCCCC--EEE
Confidence 3567778888899999999999988642 24566788888888876655554 55766653332 23432 663
Q ss_pred cCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-CcHHHHHHHHHHHHHc-CCcEEE
Q 015289 264 QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALEIIEVVRAS-GLNLMI 341 (409)
Q Consensus 264 eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~-~Gi~~~~~i~~~A~~~-gi~~~~ 341 (409)
-| ..|.+-.+. + + +.++++..| +.++.++.+..+.| +|++.+=+.. .|..+.+ -++.... ++++++
T Consensus 95 ~p--~~d~~v~~~-a---r-~~g~~~i~G--v~t~~e~~~A~~~G-ad~vk~Fpa~~~gG~~~l--k~l~~~~~~ipvva 162 (224)
T 1vhc_A 95 TP--GLNPKIVKL-C---Q-DLNFPITPG--VNNPMAIEIALEMG-ISAVKFFPAEASGGVKMI--KALLGPYAQLQIMP 162 (224)
T ss_dssp CS--SCCHHHHHH-H---H-HTTCCEECE--ECSHHHHHHHHHTT-CCEEEETTTTTTTHHHHH--HHHHTTTTTCEEEE
T ss_pred EC--CCCHHHHHH-H---H-HhCCCEEec--cCCHHHHHHHHHCC-CCEEEEeeCccccCHHHH--HHHHhhCCCCeEEE
Confidence 34 344432332 2 2 368888777 88999999999887 6998886643 3323322 2334445 789886
Q ss_pred ccC
Q 015289 342 GGM 344 (409)
Q Consensus 342 ~~~ 344 (409)
-+-
T Consensus 163 iGG 165 (224)
T 1vhc_A 163 TGG 165 (224)
T ss_dssp BSS
T ss_pred ECC
Confidence 543
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=85.01 E-value=5.4 Score=37.43 Aligned_cols=95 Identities=13% Similarity=0.185 Sum_probs=64.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCceeecCC--CC------CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCC
Q 015289 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQPV--HR------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 309 (409)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iEeP~--~~------~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a 309 (409)
..++.++.+++++.|++.|+. +||.=. .+ .|.+ ++.+.+.+..+++++.- +.+..+++++++.|
T Consensus 25 ~~~~~e~k~~i~~~L~~~Gv~--~IE~g~~~~~~~~~~~~d~~---~~~~~~~~~~~~~~~~l--~~~~~~i~~a~~aG- 96 (302)
T 2ftp_A 25 QPIEVADKIRLVDDLSAAGLD--YIEVGSFVSPKWVPQMAGSA---EVFAGIRQRPGVTYAAL--APNLKGFEAALESG- 96 (302)
T ss_dssp SCCCHHHHHHHHHHHHHTTCS--EEEEEECSCTTTCGGGTTHH---HHHHHSCCCTTSEEEEE--CCSHHHHHHHHHTT-
T ss_pred CCCCHHHHHHHHHHHHHcCcC--EEEECCCcCccccccccCHH---HHHHHhhhcCCCEEEEE--eCCHHHHHHHHhCC-
Confidence 357899999999999999985 899732 11 1322 22222223457888752 35889999999987
Q ss_pred CCEEEe-CCCC---------C---c-HHHHHHHHHHHHHcCCcEE
Q 015289 310 ADVINI-KLAK---------V---G-VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 310 ~div~~-k~~~---------~---G-i~~~~~i~~~A~~~gi~~~ 340 (409)
++.+.+ +.+. . - +..+.+++++|+++|+.+.
T Consensus 97 ~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~ 141 (302)
T 2ftp_A 97 VKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVR 141 (302)
T ss_dssp CCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 688876 3331 1 1 3446788999999999985
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=84.62 E-value=3 Score=38.01 Aligned_cols=148 Identities=13% Similarity=0.050 Sum_probs=71.7
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeEEEecCCChh-H--HHHHHHHHHhh-C--C-CcEEEEeCC---C-------CCCH---
Q 015289 183 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLK-E--DIEVLRAIRAV-H--P-DSSFILDAN---E-------GYKP--- 242 (409)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~-~--d~~~l~avr~~-~--~-~~~l~vDaN---~-------~w~~--- 242 (409)
++.+++++ +.+.+.|.. .+-+|...- . +.+.++.+.+. + . .+.+.+|+. + +|..
T Consensus 82 gi~~~~~i----~~~~~~Gad--~v~lg~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~d~~~~~g~~~v~~~g~~~~~~ 155 (266)
T 2w6r_A 82 GAGKMEHF----LEAFLAGAD--KALAASVFHFREIDMRELKEYLKKHGGSGQAVVVAIDAKRVDGEFMVFTHSGKKNTG 155 (266)
T ss_dssp CCCSTHHH----HHHHHHTCS--EEECCCCC------CHHHHHHCC----CCCEEEEEEEEEEETTEEEEEETTTTEEEE
T ss_pred CCCCHHHH----HHHHHcCCc--HhhhhHHHHhCCCCHHHHHHHHHHcCCCCCEEEEEEEEEecCCCEEEEECCCceecc
Confidence 34455543 334445754 445553222 3 55666655554 4 2 345788873 2 3421
Q ss_pred HHHHHHHHHHHhCCCCCceeec-----CCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCC
Q 015289 243 QEAVEVLEKLYEMGVTPVLFEQ-----PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKL 317 (409)
Q Consensus 243 ~~A~~~~~~L~~~~l~~~~iEe-----P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~ 317 (409)
....++++.+.+.+....++-. ....-|++.++++++ .+++||.+.=-+.++.++.++.+.| +|.+.+=-
T Consensus 156 ~~~~e~~~~~~~~G~~~i~~t~~~~~g~~~g~~~~~i~~l~~----~~~ipvia~GGI~~~ed~~~~~~~G-adgv~vgs 230 (266)
T 2w6r_A 156 ILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRP----LTTLPIIASGGAGKMEHFLEAFLAG-ADAALAAS 230 (266)
T ss_dssp EEHHHHHHHHHHTTCSEEEEEETTTTTTCSCCCHHHHHHHGG----GCCSCEEEESCCCSHHHHHHHHHHT-CSEEEEST
T ss_pred hhHHHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHH----HcCCCEEEeCCCCCHHHHHHHHHcC-CHHHHccH
Confidence 1234566667777665334411 111235777777753 5789999988899999999999876 58777654
Q ss_pred CCCc-HHHHHHHHHHHHHcCCcEEE
Q 015289 318 AKVG-VLGALEIIEVVRASGLNLMI 341 (409)
Q Consensus 318 ~~~G-i~~~~~i~~~A~~~gi~~~~ 341 (409)
.-.+ -....++.++.++.|+++-.
T Consensus 231 al~~~~~~~~~~~~~l~~~g~~~~~ 255 (266)
T 2w6r_A 231 VFHFREIDMRELKEYLKKHGVNVRL 255 (266)
T ss_dssp TTC----------------------
T ss_pred HHHcCCCCHHHHHHHHHHCCCcccc
Confidence 4443 33345566677788887643
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=84.57 E-value=20 Score=31.24 Aligned_cols=146 Identities=16% Similarity=0.249 Sum_probs=86.5
Q ss_pred eeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCC
Q 015289 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMG 256 (409)
Q Consensus 177 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~ 256 (409)
++..++-..+++++.+.++.+.+.|.+.+-+.... . ...+.++.+++..+ ..+++-+..-.+.++ ++.+.+.+
T Consensus 8 ~i~~~i~~~d~~~~~~~~~~~~~~G~~~i~l~~~~-~-~~~~~i~~i~~~~~-~~l~vg~g~~~~~~~----i~~a~~~G 80 (212)
T 2v82_A 8 PLIAILRGITPDEALAHVGAVIDAGFDAVEIPLNS-P-QWEQSIPAIVDAYG-DKALIGAGTVLKPEQ----VDALARMG 80 (212)
T ss_dssp CEEEECTTCCHHHHHHHHHHHHHHTCCEEEEETTS-T-THHHHHHHHHHHHT-TTSEEEEECCCSHHH----HHHHHHTT
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCC-h-hHHHHHHHHHHhCC-CCeEEEeccccCHHH----HHHHHHcC
Confidence 34455556688899999999999999999886542 1 33556666666432 345554333445543 44455566
Q ss_pred CCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcC
Q 015289 257 VTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASG 336 (409)
Q Consensus 257 l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~g 336 (409)
.. ++=-| ..+.+-.+. + ++.+.++..+ +.++.++.+..+.| +|++.+.++. ....-.+.++++...
T Consensus 81 ad--~V~~~--~~~~~~~~~-~----~~~g~~~~~g--~~t~~e~~~a~~~G-~d~v~v~~t~--~~g~~~~~~l~~~~~ 146 (212)
T 2v82_A 81 CQ--LIVTP--NIHSEVIRR-A----VGYGMTVCPG--CATATEAFTALEAG-AQALKIFPSS--AFGPQYIKALKAVLP 146 (212)
T ss_dssp CC--EEECS--SCCHHHHHH-H----HHTTCEEECE--ECSHHHHHHHHHTT-CSEEEETTHH--HHCHHHHHHHHTTSC
T ss_pred CC--EEEeC--CCCHHHHHH-H----HHcCCCEEee--cCCHHHHHHHHHCC-CCEEEEecCC--CCCHHHHHHHHHhcc
Confidence 54 55422 234333322 2 2457776665 78899988887776 7998764421 122233445555554
Q ss_pred --CcEEEcc
Q 015289 337 --LNLMIGG 343 (409)
Q Consensus 337 --i~~~~~~ 343 (409)
++++..+
T Consensus 147 ~~ipvia~G 155 (212)
T 2v82_A 147 SDIAVFAVG 155 (212)
T ss_dssp TTCEEEEES
T ss_pred CCCeEEEeC
Confidence 8887644
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=84.53 E-value=11 Score=38.09 Aligned_cols=119 Identities=20% Similarity=0.290 Sum_probs=80.4
Q ss_pred HHHHHHHHHHcCCCeEEEecCC-ChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeec---C
Q 015289 190 AAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ---P 265 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~-~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEe---P 265 (409)
..+.++.+.+.|...+-+.... ....-.+.++.+|+..|+..+.+ ...-+.++| +.+.+.|.. +|== |
T Consensus 232 ~~~~a~~l~~aG~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~--g~v~t~e~a----~~l~~aGaD--~I~Vg~g~ 303 (496)
T 4fxs_A 232 NEERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIG--GNVATAEGA----RALIEAGVS--AVKVGIGP 303 (496)
T ss_dssp CHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEE--EEECSHHHH----HHHHHHTCS--EEEECSSC
T ss_pred hHHHHHHHHhccCceEEeccccccchHHHHHHHHHHHHCCCceEEE--cccCcHHHH----HHHHHhCCC--EEEECCCC
Confidence 3566777888899999887763 33456678999999888887776 223456655 444455654 3321 1
Q ss_pred -----------CCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 015289 266 -----------VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (409)
Q Consensus 266 -----------~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~ 318 (409)
....++..+.++.+.++ ..++||.++=-+.+..|+.+++..| +|.+++=-.
T Consensus 304 Gs~~~tr~~~g~g~p~~~~i~~v~~~~~-~~~iPVIa~GGI~~~~di~kala~G-Ad~V~iGs~ 365 (496)
T 4fxs_A 304 GSICTTRIVTGVGVPQITAIADAAGVAN-EYGIPVIADGGIRFSGDISKAIAAG-ASCVMVGSM 365 (496)
T ss_dssp CTTBCHHHHHCCCCCHHHHHHHHHHHHG-GGTCCEEEESCCCSHHHHHHHHHTT-CSEEEESTT
T ss_pred CcCcccccccCCCccHHHHHHHHHHHhc-cCCCeEEEeCCCCCHHHHHHHHHcC-CCeEEecHH
Confidence 11224555666665432 4589999999999999999999998 599887433
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=84.49 E-value=20 Score=34.87 Aligned_cols=117 Identities=19% Similarity=0.201 Sum_probs=77.9
Q ss_pred HHHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCcee-------
Q 015289 191 AELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF------- 262 (409)
Q Consensus 191 ~~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i------- 262 (409)
.+.++.+.+.|+..+-+..+ .+.+.-.+.++.+|+..+++.+.+- +..+.++| +.+.+.++....+
T Consensus 155 ~~~a~~~~~~G~d~i~i~~~~g~~~~~~e~i~~ir~~~~~~pviv~--~v~~~~~a----~~a~~~Gad~I~vg~~~G~~ 228 (404)
T 1eep_A 155 IERVEELVKAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAG--NIVTKEAA----LDLISVGADCLKVGIGPGSI 228 (404)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEE--EECSHHHH----HHHHTTTCSEEEECSSCSTT
T ss_pred HHHHHHHHHCCCCEEEEeCCCCChHHHHHHHHHHHHHCCCCeEEEc--CCCcHHHH----HHHHhcCCCEEEECCCCCcC
Confidence 45566677889999888544 2345567788999998778888871 22345544 5556677642222
Q ss_pred ----e-cCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015289 263 ----E-QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (409)
Q Consensus 263 ----E-eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~ 315 (409)
+ .....-+++.+.++.+.+ ...++||.++=-+.+..|+.+++..| +|.+++
T Consensus 229 ~~~~~~~~~g~p~~~~l~~v~~~~-~~~~ipVia~GGI~~~~d~~~ala~G-Ad~V~i 284 (404)
T 1eep_A 229 CTTRIVAGVGVPQITAICDVYEAC-NNTNICIIADGGIRFSGDVVKAIAAG-ADSVMI 284 (404)
T ss_dssp SHHHHHHCCCCCHHHHHHHHHHHH-TTSSCEEEEESCCCSHHHHHHHHHHT-CSEEEE
T ss_pred cCccccCCCCcchHHHHHHHHHHH-hhcCceEEEECCCCCHHHHHHHHHcC-CCHHhh
Confidence 1 111112455666665432 24689999999999999999999998 699876
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=84.22 E-value=21 Score=31.32 Aligned_cols=142 Identities=15% Similarity=0.146 Sum_probs=89.0
Q ss_pred eeeecCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCC
Q 015289 179 DITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVT 258 (409)
Q Consensus 179 ~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~ 258 (409)
...+...++++..+.++.+.+-|.+.+-+..-. ....+.++.+|+ +++.+..+. -.+.+++.. ..+.+..
T Consensus 16 i~vi~~~~~~~~~~~~~~l~~gGv~~iel~~k~--~~~~~~i~~~~~--~~~~~gag~--vl~~d~~~~----A~~~GAd 85 (207)
T 2yw3_A 16 LPLLTVRGGEDLLGLARVLEEEGVGALEITLRT--EKGLEALKALRK--SGLLLGAGT--VRSPKEAEA----ALEAGAA 85 (207)
T ss_dssp EEEECCCSCCCHHHHHHHHHHTTCCEEEEECSS--THHHHHHHHHTT--SSCEEEEES--CCSHHHHHH----HHHHTCS
T ss_pred EEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCC--hHHHHHHHHHhC--CCCEEEeCe--EeeHHHHHH----HHHcCCC
Confidence 334444566677788888888999999887643 244577777777 666555544 556555422 2233443
Q ss_pred CceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-CcHHHHHHHHHHHHHc-C
Q 015289 259 PVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALEIIEVVRAS-G 336 (409)
Q Consensus 259 ~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~-~Gi~~~~~i~~~A~~~-g 336 (409)
++=-| ..|.+-.+..+ ..++|+..| +.++.++.+..+.| +|++.+=+.. .|....++ .+.... +
T Consensus 86 --~v~~~--~~d~~v~~~~~-----~~g~~~i~G--~~t~~e~~~A~~~G-ad~v~~fpa~~~gG~~~lk--~l~~~~~~ 151 (207)
T 2yw3_A 86 --FLVSP--GLLEEVAALAQ-----ARGVPYLPG--VLTPTEVERALALG-LSALKFFPAEPFQGVRVLR--AYAEVFPE 151 (207)
T ss_dssp --EEEES--SCCHHHHHHHH-----HHTCCEEEE--ECSHHHHHHHHHTT-CCEEEETTTTTTTHHHHHH--HHHHHCTT
T ss_pred --EEEcC--CCCHHHHHHHH-----HhCCCEEec--CCCHHHHHHHHHCC-CCEEEEecCccccCHHHHH--HHHhhCCC
Confidence 66655 34543333222 367888876 78899999988887 6999886644 33233332 455556 7
Q ss_pred CcEEEccC
Q 015289 337 LNLMIGGM 344 (409)
Q Consensus 337 i~~~~~~~ 344 (409)
++++.-+-
T Consensus 152 ipvvaiGG 159 (207)
T 2yw3_A 152 VRFLPTGG 159 (207)
T ss_dssp CEEEEBSS
T ss_pred CcEEEeCC
Confidence 99886543
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=83.82 E-value=2.3 Score=43.67 Aligned_cols=144 Identities=18% Similarity=0.185 Sum_probs=89.9
Q ss_pred HHHHHHHHHHcCCCeEEEecCCChhH-------------HHHHHHHHHhhCC--CcEEEEeCC-----------------
Q 015289 190 AAELASKYRKQGFTTLKLKVGKNLKE-------------DIEVLRAIRAVHP--DSSFILDAN----------------- 237 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~~~~~-------------d~~~l~avr~~~~--~~~l~vDaN----------------- 237 (409)
+.+.++++.+.|.. |+-+|...-. +.+.++.+.+.++ .+.+.+|+.
T Consensus 349 ~~~~a~~~l~aGad--~V~igt~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ivv~iD~~~~~~~~~~~~~~~~~~~ 426 (555)
T 1jvn_A 349 ALEVASLYFRSGAD--KVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFET 426 (555)
T ss_dssp HHHHHHHHHHHTCS--EEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEEC
T ss_pred HHHHHHHHHHcCCC--EEEECCHHhhCchhhccccccccCHHHHHHHHHHhCCCcEEEEEEccccccccccccccccccc
Confidence 45566777788866 4445421112 2466777877743 467889983
Q ss_pred ------C-----------CCCH---HHHHHHHHHHHhCCCCCcee-----ecCCCCCCHHHHHHhHHHhhccCCCeEEeC
Q 015289 238 ------E-----------GYKP---QEAVEVLEKLYEMGVTPVLF-----EQPVHRDDWEGLGHVSHIAKDKFGVSVAAD 292 (409)
Q Consensus 238 ------~-----------~w~~---~~A~~~~~~L~~~~l~~~~i-----EeP~~~~d~~~~~~l~~~~~~~~~ipIa~d 292 (409)
+ +|+. -.+.++++.+++++..-..+ ++=...-|++.++++++ .+++||.+.
T Consensus 427 ~~~~~~g~~~~~~~v~~~Gw~~~~~~~~~e~a~~~~~~Ga~~il~t~~~~dG~~~G~d~~li~~l~~----~~~iPVIas 502 (555)
T 1jvn_A 427 EYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNCIDKDGSNSGYDLELIEHVKD----AVKIPVIAS 502 (555)
T ss_dssp SSCCTTCCCEEEEEEEETTTTEEEEEEHHHHHHHHHHTTCCEEEECCGGGTTTCSCCCHHHHHHHHH----HCSSCEEEC
T ss_pred cccCCCCCcceeEEEEEecCccCCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCHHHHHHHHH----hCCccEEEE
Confidence 2 3432 23578899999988652222 11112247888888864 578999998
Q ss_pred CCCCCHHHHHHHHHcCCCCEEEeCCCCC-cHHHHHHHHHHHHHcCCcE
Q 015289 293 ESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNL 339 (409)
Q Consensus 293 Es~~~~~~~~~~i~~~a~div~~k~~~~-Gi~~~~~i~~~A~~~gi~~ 339 (409)
=-+.+++|+.++++...+|.+.+=-... |-....++.++++..|+++
T Consensus 503 GGi~s~~d~~~~~~~~G~~gvivg~a~~~~~~~~~e~~~~l~~~gi~~ 550 (555)
T 1jvn_A 503 SGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVKEYLLEHGLKV 550 (555)
T ss_dssp SCCCSHHHHHHHHHHSCCSEEEESHHHHTTSCCHHHHHHHHHHTTCCC
T ss_pred CCCCCHHHHHHHHHhcCChHHHHHHHHHcCCCCHHHHHHHHHHCCCcc
Confidence 8899999999999833356665422111 2122445666778888875
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=83.57 E-value=28 Score=32.21 Aligned_cols=124 Identities=15% Similarity=0.158 Sum_probs=74.3
Q ss_pred HHHHHHHcCCCeEEEec-----------CCChhHHHHHH----HHHHhhCCCcE--EE--EeCC--CCCCHHHHHHHHHH
Q 015289 193 LASKYRKQGFTTLKLKV-----------GKNLKEDIEVL----RAIRAVHPDSS--FI--LDAN--EGYKPQEAVEVLEK 251 (409)
Q Consensus 193 ~~~~~~~~Gf~~~KiKv-----------G~~~~~d~~~l----~avr~~~~~~~--l~--vDaN--~~w~~~~A~~~~~~ 251 (409)
.++++.+.|++.+-+-+ +.+.++.++++ +.+++.+-.+. |. +++- ..++++++.++++.
T Consensus 84 ~i~~a~~~G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~ 163 (295)
T 1ydn_A 84 GYEAAAAAHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQ 163 (295)
T ss_dssp HHHHHHHTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHH
Confidence 34556678998888764 23556666664 33344343332 21 3322 35789999999999
Q ss_pred HHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCC-CeEEeC---CCCCCHHHHHHHHHcCCCCEEEeCC
Q 015289 252 LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG-VSVAAD---ESCRSLDDVKKIVKGNLADVINIKL 317 (409)
Q Consensus 252 L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~-ipIa~d---Es~~~~~~~~~~i~~~a~div~~k~ 317 (409)
+.+.|+....+=+..-.-......++-+.+++..+ +||..- -+-.........++.| ++.++.-+
T Consensus 164 ~~~~G~d~i~l~Dt~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~an~l~Ai~aG-~~~vd~sv 232 (295)
T 1ydn_A 164 LFSLGCHEVSLGDTIGRGTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRALDNIRVSLEKG-LRVFDASV 232 (295)
T ss_dssp HHHHTCSEEEEEETTSCCCHHHHHHHHHHHHTTSCGGGEEEEEBCTTSCHHHHHHHHHHHT-CCEEEEBT
T ss_pred HHhcCCCEEEecCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCcchHHHHHHHHHHhC-CCEEEecc
Confidence 98888754566666655555555555554555665 677642 1222334556777777 57777655
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=83.23 E-value=2.7 Score=37.94 Aligned_cols=148 Identities=17% Similarity=0.140 Sum_probs=83.4
Q ss_pred eecCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhh-CCC-cEEEEeCCC----------CCCH---HHH
Q 015289 181 TIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPD-SSFILDANE----------GYKP---QEA 245 (409)
Q Consensus 181 ~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~-~~~-~~l~vDaN~----------~w~~---~~A 245 (409)
..++.++++ ++++++.|...+ -+|...-.+-+.++.+++. +.+ +.+.+|++. +|.. ...
T Consensus 81 ~Ggi~~~~~----~~~~~~~Gad~V--~lg~~~l~~p~~~~~~~~~~~~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~ 154 (252)
T 1ka9_F 81 GGGVRSLED----ARKLLLSGADKV--SVNSAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHA 154 (252)
T ss_dssp ESSCCSHHH----HHHHHHHTCSEE--EECHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEH
T ss_pred ECCcCCHHH----HHHHHHcCCCEE--EEChHHHhCcHHHHHHHHHcCCCcEEEEEEEecCCCCEEEEECCCccccCCcH
Confidence 333445543 444556685544 5553222334456666665 434 568888742 3431 123
Q ss_pred HHHHHHHHhCCCCCcee-----ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCC
Q 015289 246 VEVLEKLYEMGVTPVLF-----EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV 320 (409)
Q Consensus 246 ~~~~~~L~~~~l~~~~i-----EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~ 320 (409)
.++++.+.+.+.....+ +.....-|++.++++++ .+++||.+.=-+.++.++.++.+.| +|.+.+=-.-.
T Consensus 155 ~e~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~l~~----~~~ipvia~GGI~~~~d~~~~~~~G-adgv~vgsal~ 229 (252)
T 1ka9_F 155 VEWAVKGVELGAGEILLTSMDRDGTKEGYDLRLTRMVAE----AVGVPVIASGGAGRMEHFLEAFQAG-AEAALAASVFH 229 (252)
T ss_dssp HHHHHHHHHHTCCEEEEEETTTTTTCSCCCHHHHHHHHH----HCSSCEEEESCCCSHHHHHHHHHTT-CSEEEESHHHH
T ss_pred HHHHHHHHHcCCCEEEEecccCCCCcCCCCHHHHHHHHH----HcCCCEEEeCCCCCHHHHHHHHHCC-CHHHHHHHHHH
Confidence 44556666655542222 11112236777888764 5689999988899999999999866 67775521111
Q ss_pred c-HHHHHHHHHHHHHcCCcE
Q 015289 321 G-VLGALEIIEVVRASGLNL 339 (409)
Q Consensus 321 G-i~~~~~i~~~A~~~gi~~ 339 (409)
+ -....++.+.+++.|+++
T Consensus 230 ~~~~~~~~~~~~l~~~~~~~ 249 (252)
T 1ka9_F 230 FGEIPIPKLKRYLAEKGVHV 249 (252)
T ss_dssp TTSSCHHHHHHHHHHTTCCB
T ss_pred cCCCCHHHHHHHHHHCCCCc
Confidence 1 112345556677888765
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=83.08 E-value=5.2 Score=35.92 Aligned_cols=128 Identities=19% Similarity=0.196 Sum_probs=76.1
Q ss_pred eeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhh-CCCcEEEEeCC------CCCCHH--HHHHH
Q 015289 178 TDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDAN------EGYKPQ--EAVEV 248 (409)
Q Consensus 178 ~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~-~~~~~l~vDaN------~~w~~~--~A~~~ 248 (409)
+....++.++++ ++.+.+.|...+ -+|...-.+.+.+..+++. +..+.+.+|+. .+|... +..++
T Consensus 78 v~v~ggI~~~~~----~~~~l~~Gad~V--~lg~~~l~~p~~~~~~~~~~g~~~~~~l~~~~g~v~~~g~~~~~~~~~e~ 151 (244)
T 1vzw_A 78 VELSGGIRDDDT----LAAALATGCTRV--NLGTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYET 151 (244)
T ss_dssp EEEESSCCSHHH----HHHHHHTTCSEE--EECHHHHHCHHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHHHH
T ss_pred EEEECCcCCHHH----HHHHHHcCCCEE--EECchHhhCHHHHHHHHHHcCCcEEEEEEccCCEEEEcCcccCCCCHHHH
Confidence 333344556654 445566786654 4553222344555555554 55567788875 245210 33456
Q ss_pred HHHHHhCCCCCceeec-----CCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcC--CCCEEEe
Q 015289 249 LEKLYEMGVTPVLFEQ-----PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN--LADVINI 315 (409)
Q Consensus 249 ~~~L~~~~l~~~~iEe-----P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~--a~div~~ 315 (409)
++.+.+.++....+=. -...-+++.++++++ ..++||.++=-+.++.++.++++.. .+|.+.+
T Consensus 152 ~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~i~~----~~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~v 221 (244)
T 1vzw_A 152 LDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNVCA----ATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIV 221 (244)
T ss_dssp HHHHHHTTCCCEEEEEC-------CCCHHHHHHHHH----TCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred HHHHHhCCCCEEEEeccCcccccCCCCHHHHHHHHH----hcCCCEEEECCCCCHHHHHHHHhhccCCCceeee
Confidence 6667777665333321 112236777888764 5689999999999999999999872 3677755
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=82.74 E-value=14 Score=34.21 Aligned_cols=95 Identities=19% Similarity=0.140 Sum_probs=68.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCCcee----ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 015289 239 GYKPQEAVEVLEKLYEMGVTPVLF----EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 314 (409)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~i----EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~ 314 (409)
.+++. ++++..++.|.. +| |+..-....+.++++++ .+++||...+-+.+..++..+...| +|.+.
T Consensus 78 ~~dp~---~~A~~y~~~GA~--~IsVltd~~~f~Gs~~~L~~ir~----~v~lPVl~Kdfi~d~~qi~ea~~~G-AD~Vl 147 (272)
T 3tsm_A 78 DFDPP---ALAKAYEEGGAA--CLSVLTDTPSFQGAPEFLTAARQ----ACSLPALRKDFLFDPYQVYEARSWG-ADCIL 147 (272)
T ss_dssp SCCHH---HHHHHHHHTTCS--EEEEECCSTTTCCCHHHHHHHHH----TSSSCEEEESCCCSTHHHHHHHHTT-CSEEE
T ss_pred CCCHH---HHHHHHHHCCCC--EEEEeccccccCCCHHHHHHHHH----hcCCCEEECCccCCHHHHHHHHHcC-CCEEE
Confidence 34553 355666666543 33 55555556666777653 6789998888888888998888887 59998
Q ss_pred eCCCCCcHHHHHHHHHHHHHcCCcEEEcc
Q 015289 315 IKLAKVGVLGALEIIEVVRASGLNLMIGG 343 (409)
Q Consensus 315 ~k~~~~Gi~~~~~i~~~A~~~gi~~~~~~ 343 (409)
+......-....++.+.|++.|+.+++-.
T Consensus 148 Li~a~L~~~~l~~l~~~a~~lGl~~lvev 176 (272)
T 3tsm_A 148 IIMASVDDDLAKELEDTAFALGMDALIEV 176 (272)
T ss_dssp EETTTSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EcccccCHHHHHHHHHHHHHcCCeEEEEe
Confidence 98877665567788999999999987543
|
| >4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D* | Back alignment and structure |
|---|
Probab=82.49 E-value=10 Score=36.06 Aligned_cols=142 Identities=13% Similarity=0.121 Sum_probs=83.5
Q ss_pred HHHHHHHHH-HcCCCeEEEecC-C-------ChhHHHHHHHHHHhhCCCcEEEEe--CCCCCCHHHHHHHHHHHHhC-CC
Q 015289 190 AAELASKYR-KQGFTTLKLKVG-K-------NLKEDIEVLRAIRAVHPDSSFILD--ANEGYKPQEAVEVLEKLYEM-GV 257 (409)
Q Consensus 190 ~~~~~~~~~-~~Gf~~~KiKvG-~-------~~~~d~~~l~avr~~~~~~~l~vD--aN~~w~~~~A~~~~~~L~~~-~l 257 (409)
..+.+++.+ +.|-..+-+... . ..++..+++++|++.. ++.|+|| .|.+++++-+.+-++..... ++
T Consensus 82 ~~~~A~~~v~~~GAdiIDIg~eStrP~~~~vs~ee~~~~V~~v~~~~-~vPlsIDg~~~~T~~~eV~eaAleagag~~~l 160 (323)
T 4djd_D 82 PGRWAQKCVAEYGADLIYLKLDGADPEGANHSVDQCVATVKEVLQAV-GVPLVVVGCGDVEKDHEVLEAVAEAAAGENLL 160 (323)
T ss_dssp HHHHHHHHHHTTCCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHC-CSCEEEECCSCHHHHHHHHHHHHHHTTTSCCE
T ss_pred HHHHHHHHHHHcCCCEEEEcCccCCCCCCCCCHHHHHHHHHHHHhhC-CceEEEECCCCCCCCHHHHHHHHHhcCCCCCe
Confidence 456677777 889999888742 2 2335666788888764 7889999 56677777766666666442 21
Q ss_pred CCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHH---HcCCC--CEEEeCCCC--Cc--HHHHHHH
Q 015289 258 TPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIV---KGNLA--DVINIKLAK--VG--VLGALEI 328 (409)
Q Consensus 258 ~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i---~~~a~--div~~k~~~--~G--i~~~~~i 328 (409)
+.-+. .++++.+..+.+ +++.||++- +..+..-+++++ .+..+ +=+.+||.- +| ....+.+
T Consensus 161 -INsv~----~~~~~~m~~laa----~~g~~vVlm-h~~d~~~~~~l~~~a~~~GI~~e~IIlDPg~g~fgk~~e~~l~~ 230 (323)
T 4djd_D 161 -LGNAE----QENYKSLTAACM----VHKHNIIAR-SPLDINICKQLNILINEMNLPLDHIVIDPSIGGLGYGIEYSFSI 230 (323)
T ss_dssp -EEEEB----TTBCHHHHHHHH----HHTCEEEEE-CSSCHHHHHHHHHHHHTTTCCGGGEEEECCCCCTTTTHHHHHHH
T ss_pred -EEECC----cccHHHHHHHHH----HhCCeEEEE-ccchHHHHHHHHHHHHHcCCCHHHEEEeCCCccccCCHHHHHHH
Confidence 11222 224456666654 578999872 122333333322 22224 336789886 44 4444433
Q ss_pred HHHH--------HHcCCcEEEc
Q 015289 329 IEVV--------RASGLNLMIG 342 (409)
Q Consensus 329 ~~~A--------~~~gi~~~~~ 342 (409)
.... +.+|+|+..+
T Consensus 231 l~~ir~~al~~~~~lg~PvL~G 252 (323)
T 4djd_D 231 MERIRLGALQGDKMLSMPVICT 252 (323)
T ss_dssp HHHHHHHHHHTCGGGCSCBEEE
T ss_pred HHHHHHHhhcccccCCCCEEEe
Confidence 3222 2689998886
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=81.70 E-value=6.4 Score=37.69 Aligned_cols=100 Identities=17% Similarity=0.119 Sum_probs=69.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCceeec------CC--------CCCCHHHHHHhHHHhhccCCCeEEe--CCCCCCHHHH
Q 015289 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQ------PV--------HRDDWEGLGHVSHIAKDKFGVSVAA--DESCRSLDDV 301 (409)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iEe------P~--------~~~d~~~~~~l~~~~~~~~~ipIa~--dEs~~~~~~~ 301 (409)
..++.++-+++++.|.+.|+. .||= |. ..++++.++++++ ...+++|.. --......++
T Consensus 25 ~~~~~e~k~~i~~~L~~~Gvd--~IEvG~~~g~p~ssp~~g~~~~~~~e~l~~i~~---~~~~~~i~~l~~p~~~~~~~i 99 (345)
T 1nvm_A 25 HQYTLDDVRAIARALDKAKVD--SIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAG---EISHAQIATLLLPGIGSVHDL 99 (345)
T ss_dssp TCCCHHHHHHHHHHHHHHTCS--EEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHT---TCSSSEEEEEECBTTBCHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEEecCCCCCCCCCcccCCCCCHHHHHHHHHh---hCCCCEEEEEecCCcccHHHH
Confidence 357899999999999999985 9998 33 2456776666653 223567653 1123357788
Q ss_pred HHHHHcCCCCEEEeCCCCCcHHHHHHHHHHHHHcCCcEEEcc
Q 015289 302 KKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGG 343 (409)
Q Consensus 302 ~~~i~~~a~div~~k~~~~Gi~~~~~i~~~A~~~gi~~~~~~ 343 (409)
+++.+.| +|.+.+-....=...+.++++.|+++|+.+....
T Consensus 100 ~~a~~aG-vd~v~I~~~~s~~~~~~~~i~~ak~~G~~v~~~~ 140 (345)
T 1nvm_A 100 KNAYQAG-ARVVRVATHCTEADVSKQHIEYARNLGMDTVGFL 140 (345)
T ss_dssp HHHHHHT-CCEEEEEEETTCGGGGHHHHHHHHHHTCEEEEEE
T ss_pred HHHHhCC-cCEEEEEEeccHHHHHHHHHHHHHHCCCEEEEEE
Confidence 8888886 6887764321113467788899999999987654
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=81.62 E-value=3.4 Score=37.11 Aligned_cols=127 Identities=17% Similarity=0.205 Sum_probs=76.0
Q ss_pred eeeecCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhh-CCCcEEEEeCC----------CCCCH--HHH
Q 015289 179 DITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDAN----------EGYKP--QEA 245 (409)
Q Consensus 179 ~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~-~~~~~l~vDaN----------~~w~~--~~A 245 (409)
....++.++++ ++.+++.|...+ -+|...-.+.+.+..+++. +..+.+.+|+. .+|.. .+.
T Consensus 78 ~v~ggi~~~~~----~~~~l~~Gad~V--~lg~~~l~~p~~~~~~~~~~g~~~~~~ld~~~~~~~~~v~~~g~~~~~~~~ 151 (244)
T 2y88_A 78 ELSGGIRDDES----LAAALATGCARV--NVGTAALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGGDL 151 (244)
T ss_dssp EEESSCCSHHH----HHHHHHTTCSEE--EECHHHHHCHHHHHHHHHHHGGGEEEEEEEEEETTEEEEEEGGGTEEEEEH
T ss_pred EEECCCCCHHH----HHHHHHcCCCEE--EECchHhhChHHHHHHHHHcCCCEEEEEeccccCCCCEEEECCccCCCCCH
Confidence 33344556654 445566786654 4553222344556555554 55567778875 13420 034
Q ss_pred HHHHHHHHhCCCCCcee---e--cCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcC--CCCEEEe
Q 015289 246 VEVLEKLYEMGVTPVLF---E--QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN--LADVINI 315 (409)
Q Consensus 246 ~~~~~~L~~~~l~~~~i---E--eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~--a~div~~ 315 (409)
.++++.+.+.++....+ . +-...-+++.++++++ ..++||.++=-+.+..++.++++.. .+|.+.+
T Consensus 152 ~e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~l~~----~~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~v 224 (244)
T 2y88_A 152 WDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVAD----RTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIV 224 (244)
T ss_dssp HHHHHHHHHTTCCCEEEEETTTTTTTSCCCHHHHHHHHT----TCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred HHHHHHHHhCCCCEEEEEecCCccccCCCCHHHHHHHHH----hCCCCEEEECCCCCHHHHHHHHhhccCCCCEEEE
Confidence 56677777777653333 1 1112236777777763 5689999998999999999999872 3677755
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=81.25 E-value=17 Score=36.68 Aligned_cols=117 Identities=18% Similarity=0.198 Sum_probs=76.1
Q ss_pred HHHHHHHHHHcCCCeEEEecCC-ChhHHHHHHHHHHhhCCCcEEEE-eCCCCCCHHHHHHHHHHHHhCCCCCceee---c
Q 015289 190 AAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFIL-DANEGYKPQEAVEVLEKLYEMGVTPVLFE---Q 264 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~-~~~~d~~~l~avr~~~~~~~l~v-DaN~~w~~~~A~~~~~~L~~~~l~~~~iE---e 264 (409)
..+.++.+++.|+..+-+..+. +.+...+.++.+|+..|++.+.+ +. -+.++| +.+.+.|+. +|- .
T Consensus 256 ~~~~a~~~~~aG~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v---~t~~~a----~~l~~aGad--~I~vg~~ 326 (514)
T 1jcn_A 256 DKYRLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNV---VTAAQA----KNLIDAGVD--GLRVGMG 326 (514)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEE---CSHHHH----HHHHHHTCS--EEEECSS
T ss_pred hHHHHHHHHHcCCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEeccc---chHHHH----HHHHHcCCC--EEEECCC
Confidence 4566777888999999987652 34456688999999877887775 33 455554 444455543 330 0
Q ss_pred C--------CCCC---CHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCC
Q 015289 265 P--------VHRD---DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKL 317 (409)
Q Consensus 265 P--------~~~~---d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~ 317 (409)
| .... ....+..+.+ .++..++||.++=.+.+..++.+++..| +|.+++=-
T Consensus 327 ~G~~~~t~~~~~~g~~~~~~~~~~~~-~~~~~~ipVia~GGI~~~~di~kala~G-Ad~V~iG~ 388 (514)
T 1jcn_A 327 CGSICITQEVMACGRPQGTAVYKVAE-YARRFGVPIIADGGIQTVGHVVKALALG-ASTVMMGS 388 (514)
T ss_dssp CSCCBTTBCCCSCCCCHHHHHHHHHH-HHGGGTCCEEEESCCCSHHHHHHHHHTT-CSEEEEST
T ss_pred CCcccccccccCCCccchhHHHHHHH-HHhhCCCCEEEECCCCCHHHHHHHHHcC-CCeeeECH
Confidence 1 0000 1222333332 2235689999999999999999999998 79987643
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=80.94 E-value=32 Score=34.27 Aligned_cols=162 Identities=16% Similarity=0.247 Sum_probs=93.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCC--------hhHHHHHHHHHHhhCCCcEEE--EeC-CC-CCC--HHH-HHHHHH
Q 015289 186 SPAEAAELASKYRKQGFTTLKLKVGKN--------LKEDIEVLRAIRAVHPDSSFI--LDA-NE-GYK--PQE-AVEVLE 250 (409)
Q Consensus 186 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~--------~~~d~~~l~avr~~~~~~~l~--vDa-N~-~w~--~~~-A~~~~~ 250 (409)
+.++..+.++.+.+.|+..+.+-.+.. -+.|.++++.+++..++..+. +.+ |- +|+ ++. -..+++
T Consensus 28 ~~~dkl~Ia~~L~~~Gv~~IE~g~~atF~~~~r~~~~d~~e~l~~i~~~~~~~~l~~l~R~~N~~G~~~~~ddv~~~~v~ 107 (464)
T 2nx9_A 28 RIDDMLPIAQQLDQIGYWSLECWGGATFDSCIRFLGEDPWQRLRLLKQAMPNTPLQMLLRGQNLLGYRHYADDVVDTFVE 107 (464)
T ss_dssp CGGGTGGGHHHHHTSCCSEEEEEETTHHHHHHHTTCCCHHHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCcCccccchhhccCCCHHHHHHHHHHhCCCCeEEEEeccccccCcccccchhhHHHHH
Confidence 445556667777888999998854321 246788999999876665554 432 32 342 222 345778
Q ss_pred HHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEE-----eCCCCCCHHHH----HHHHHcCCCCEEEeCCCC-C
Q 015289 251 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVA-----ADESCRSLDDV----KKIVKGNLADVINIKLAK-V 320 (409)
Q Consensus 251 ~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa-----~dEs~~~~~~~----~~~i~~~a~div~~k~~~-~ 320 (409)
...+.++...-|=.++ .|.+.+....+.++ +.+..+. .+-+-+++..+ +.+.+.| +|.+.++=+- .
T Consensus 108 ~a~~~Gvd~i~if~~~--sd~~ni~~~i~~ak-~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~G-ad~I~l~DT~G~ 183 (464)
T 2nx9_A 108 RAVKNGMDVFRVFDAM--NDVRNMQQALQAVK-KMGAHAQGTLCYTTSPVHNLQTWVDVAQQLAELG-VDSIALKDMAGI 183 (464)
T ss_dssp HHHHTTCCEEEECCTT--CCTHHHHHHHHHHH-HTTCEEEEEEECCCCTTCCHHHHHHHHHHHHHTT-CSEEEEEETTSC
T ss_pred HHHhCCcCEEEEEEec--CHHHHHHHHHHHHH-HCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHCC-CCEEEEcCCCCC
Confidence 8878877533333333 45565655544333 3455552 23344565544 3455566 5887776443 2
Q ss_pred c-HHHHHHHH-HHHHHcCCcEEEccCCchHHHH
Q 015289 321 G-VLGALEII-EVVRASGLNLMIGGMVETRLAM 351 (409)
Q Consensus 321 G-i~~~~~i~-~~A~~~gi~~~~~~~~es~i~~ 351 (409)
+ .....+++ .+.+..++++.+|+-...+++.
T Consensus 184 ~~P~~v~~lv~~l~~~~~~~i~~H~Hnd~GlAv 216 (464)
T 2nx9_A 184 LTPYAAEELVSTLKKQVDVELHLHCHSTAGLAD 216 (464)
T ss_dssp CCHHHHHHHHHHHHHHCCSCEEEEECCTTSCHH
T ss_pred cCHHHHHHHHHHHHHhcCCeEEEEECCCCChHH
Confidence 3 44555544 4455668999988865555443
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=80.74 E-value=21 Score=36.04 Aligned_cols=116 Identities=19% Similarity=0.245 Sum_probs=76.7
Q ss_pred HHHHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhhCCCcEEEE-eCCCCCCHHHHHHHHHHHHhCCCCCceeec---
Q 015289 190 AAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFIL-DANEGYKPQEAVEVLEKLYEMGVTPVLFEQ--- 264 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~~~~~~l~v-DaN~~w~~~~A~~~~~~L~~~~l~~~~iEe--- 264 (409)
..+.++.+++.|...+-+... .....-++.++.+|+.+|+..+.+ +.. +.++| +.+.+.|+. +|--
T Consensus 257 ~~era~aLveaGvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~---t~e~a----~~~~~aGad--~i~vg~g 327 (511)
T 3usb_A 257 AMTRIDALVKASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVA---TAEAT----KALIEAGAN--VVKVGIG 327 (511)
T ss_dssp HHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEEC---SHHHH----HHHHHHTCS--EEEECSS
T ss_pred hHHHHHHHHhhccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeec---cHHHH----HHHHHhCCC--EEEECCC
Confidence 355667778889888887654 234455678888888888776664 433 55554 344455653 4420
Q ss_pred -----------CCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 015289 265 -----------PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 265 -----------P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k 316 (409)
-+..-++..+.++.+.. +..++||.++=-+.+..|+.+++..| +|.+++=
T Consensus 328 ~gsi~~~~~~~g~g~p~~~~l~~v~~~~-~~~~iPVIa~GGI~~~~di~kala~G-A~~V~vG 388 (511)
T 3usb_A 328 PGSICTTRVVAGVGVPQLTAVYDCATEA-RKHGIPVIADGGIKYSGDMVKALAAG-AHVVMLG 388 (511)
T ss_dssp CSTTCCHHHHHCCCCCHHHHHHHHHHHH-HTTTCCEEEESCCCSHHHHHHHHHTT-CSEEEES
T ss_pred CccccccccccCCCCCcHHHHHHHHHHH-HhCCCcEEEeCCCCCHHHHHHHHHhC-chhheec
Confidence 11122455566655432 34689999999999999999999998 5888764
|
| >3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=80.32 E-value=28 Score=34.38 Aligned_cols=116 Identities=15% Similarity=0.066 Sum_probs=79.3
Q ss_pred eeeeeee--cCCCHHHHHHHHHHHHHcCCCeEEEe--------cC-------CChhHHHHHHHHHHhh----CCCcEE--
Q 015289 176 ITTDITI--PIVSPAEAAELASKYRKQGFTTLKLK--------VG-------KNLKEDIEVLRAIRAV----HPDSSF-- 232 (409)
Q Consensus 176 i~~~~~i--~~~~~~~~~~~~~~~~~~Gf~~~KiK--------vG-------~~~~~d~~~l~avr~~----~~~~~l-- 232 (409)
+|+.+.+ |...+.++.+.++.+.+.|.-.+-|. .| .+.++-+++|+++|++ ++++-|
T Consensus 153 ~PviaD~dtGfG~~~~v~~~vk~~~~aGaaGi~iEDq~~~~KkCGH~~gk~lv~~~e~v~rI~Aar~A~~~~g~d~~IiA 232 (439)
T 3i4e_A 153 APIVADAEAGFGGVLNAFELMKAMIEAGASGVHFEDQLASVKKCGHMGGKVLVPTREAVAKLTAARLAADVMGTPTVLVA 232 (439)
T ss_dssp CCEEEECTTTTSSHHHHHHHHHHHHHHTCSEEEEESBCGGGCBCSTTCBCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred CCeEEECCCCCCccHHHHHHHHHHHHcCCEEEEEeCCCCCccccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 5544333 44566677888899999999888763 22 2567778899999863 566544
Q ss_pred EEeCCCC----------------------------CCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhcc
Q 015289 233 ILDANEG----------------------------YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDK 284 (409)
Q Consensus 233 ~vDaN~~----------------------------w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~ 284 (409)
|.|+... ...++|++.+++..+ +-...|+|-+.+ +.+.++++++.++..
T Consensus 233 RTDa~~a~l~~s~~d~~d~~fi~G~r~~eg~~~~~~gldeAI~Ra~AY~~-GAD~if~E~~~~--~~eei~~f~~~v~~~ 309 (439)
T 3i4e_A 233 RTDAEAADLITSDIDDNDKPYLTGERTVEGFFRTKPGLEQAISRGLAYAP-YADLIWCETGKP--DLEYAKKFAEAIHKQ 309 (439)
T ss_dssp EECTTTCCEESCCCCTTTGGGEEEEECTTSCEEECCSHHHHHHHHHHHTT-TCSEEEECCSSC--CHHHHHHHHHHHHHH
T ss_pred EcCcccccccccccccccchhhcccCcccccccccCCHHHHHHHHHHHHh-hCCEEEecCCCC--CHHHHHHHHHHhccc
Confidence 7898653 468999999999888 766679987664 567788887655433
Q ss_pred CCCe-EEeCCC
Q 015289 285 FGVS-VAADES 294 (409)
Q Consensus 285 ~~ip-Ia~dEs 294 (409)
...+ ++.+-+
T Consensus 310 ~P~~~l~~~~s 320 (439)
T 3i4e_A 310 FPGKLLSYNCS 320 (439)
T ss_dssp STTCEEEEECC
T ss_pred CCceEEeeCCC
Confidence 3443 444433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 409 | ||||
| d1jpdx1 | 208 | c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Esch | 4e-30 | |
| d1jpma1 | 234 | c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Baci | 7e-29 | |
| d1r6wa1 | 221 | c.1.11.2 (A:100-320) O-succinylbenzoate synthase { | 9e-27 | |
| d1jdfa1 | 309 | c.1.11.2 (A:138-446) D-glucarate dehydratase {Esch | 5e-26 | |
| d1kcza1 | 253 | c.1.11.2 (A:161-413) beta-Methylaspartase {Clostri | 8e-24 | |
| d1kkoa1 | 251 | c.1.11.2 (A:161-411) beta-Methylaspartase {Citroba | 4e-23 | |
| d1wufa1 | 244 | c.1.11.2 (A:1127-1370) N-acylamino acid racemase { | 4e-21 | |
| d1muca1 | 242 | c.1.11.2 (A:131-372) Muconate-lactonizing enzyme { | 5e-20 | |
| d2chra1 | 244 | c.1.11.2 (A:127-370) Chlormuconate cycloisomerase | 3e-19 | |
| d1r0ma1 | 243 | c.1.11.2 (A:133-375) N-acylamino acid racemase {De | 9e-19 | |
| d1wuea1 | 241 | c.1.11.2 (A:1127-1367) N-acylamino acid racemase { | 3e-18 | |
| d1yeya1 | 252 | c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas | 7e-18 | |
| d1sjda1 | 242 | c.1.11.2 (A:126-367) N-acylamino acid racemase {Am | 2e-16 | |
| d1muca2 | 127 | d.54.1.1 (A:4-130) Muconate-lactonizing enzyme (ci | 3e-16 | |
| d1nu5a1 | 243 | c.1.11.2 (A:127-369) Chlormuconate cycloisomerase | 7e-16 | |
| d1jpma2 | 125 | d.54.1.1 (A:1-125) L-Ala-D/L-Glu epimerase {Bacill | 9e-16 | |
| d1wufa2 | 126 | d.54.1.1 (A:1001-1126) N-acylamino acid racemase { | 6e-15 | |
| d1wuea2 | 126 | d.54.1.1 (A:1001-1126) N-acylamino acid racemase { | 1e-14 | |
| d2chra2 | 126 | d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {A | 1e-14 | |
| d1r0ma2 | 127 | d.54.1.1 (A:6-132) N-acylamino acid racemase {Dein | 4e-14 | |
| d1jpdx2 | 116 | d.54.1.1 (X:-2-113) L-Ala-D/L-Glu epimerase {Esche | 3e-13 | |
| d2gdqa2 | 115 | d.54.1.1 (A:4-118) Hypothetical protein YitF {Baci | 7e-13 | |
| d1nu5a2 | 126 | d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {P | 1e-12 | |
| d1tzza1 | 247 | c.1.11.2 (A:1146-1392) Hypothetical protein Bll673 | 1e-12 | |
| d2mnra2 | 130 | d.54.1.1 (A:3-132) Mandelate racemase {Pseudomonas | 2e-12 | |
| d1sjda2 | 125 | d.54.1.1 (A:1-125) N-acylamino acid racemase {Amyc | 2e-12 | |
| d1r6wa2 | 101 | d.54.1.1 (A:-2-99) O-succinylbenzoate synthase {Es | 3e-12 | |
| d1tzza2 | 140 | d.54.1.1 (A:1006-1145) Hypothetical protein Bll673 | 5e-12 | |
| d2gdqa1 | 256 | c.1.11.2 (A:119-374) Hypothetical protein YitF {Ba | 1e-11 | |
| d2gl5a1 | 278 | c.1.11.2 (A:123-400) Putative dehydratase protein | 1e-10 | |
| d1rvka1 | 255 | c.1.11.2 (A:127-381) Hypothetical protein Atu3453 | 3e-10 | |
| d1bqga2 | 132 | d.54.1.1 (A:12-143) D-glucarate dehydratase {Pseud | 3e-10 | |
| d1yeya2 | 139 | d.54.1.1 (A:2-140) RTS beta protein {Xanthomonas c | 7e-10 | |
| d2gl5a2 | 122 | d.54.1.1 (A:1-122) Putative dehydratase protein ST | 1e-09 | |
| d1jdfa2 | 133 | d.54.1.1 (A:5-137) D-glucarate dehydratase {Escher | 1e-09 | |
| d2mnra1 | 227 | c.1.11.2 (A:133-359) Mandelate racemase {Pseudomon | 2e-09 | |
| d1rvka2 | 126 | d.54.1.1 (A:1-126) Hypothetical protein Atu3453 {A | 2e-07 |
| >d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Escherichia coli [TaxId: 562]
Score = 113 bits (283), Expect = 4e-30
Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 16/206 (7%)
Query: 175 TITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFIL 234
T+ T T+ I +P + A AS + G LK+K+ + E + AIR PD++ I+
Sbjct: 5 TVITAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDNH--LISERMVAIRTAVPDATLIV 62
Query: 235 DANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADES 294
DANE ++ + + L ++ + EQP+ D L + H + + ADES
Sbjct: 63 DANESWRAEGLAARCQLLADL--GVAMLEQPLPAQDDAALENFIH------PLPICADES 114
Query: 295 CRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLAMGF 353
C + ++K + +++NIKL K G+ AL + RA G +LM+G M+ T A+
Sbjct: 115 CHTRSNLKALKGR--YEMVNIKLDKTGGLTEALALATEARAQGFSLMLGCMLCTSRAISA 172
Query: 354 AGHLSAGLGCFKFIDLDTPLLLSEDP 379
A L F DLD P L+ D
Sbjct: 173 ALPLVPQ---VSFADLDGPTWLAVDV 195
|
| >d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Score = 110 bits (276), Expect = 7e-29
Identities = 86/230 (37%), Positives = 123/230 (53%), Gaps = 7/230 (3%)
Query: 174 NTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIR-AVHPDSS 231
+T+ TD T+ + SP E A A Y KQGF TLK+KVGK ++ DI ++ IR V
Sbjct: 3 DTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGSAVK 62
Query: 232 FILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 291
LDAN+G++P+EAV + K+ + G+ L EQPVH+DD GL V+ + A
Sbjct: 63 LRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVTDATDTP----IMA 118
Query: 292 DESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLA 350
DES + ++++ AD+INIKL K G + GA +I + A G+ M+G M+ET+L
Sbjct: 119 DESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGSMIETKLG 178
Query: 351 MGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 400
+ A H +A D D PL+L D G SG+ G G
Sbjct: 179 ITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLG 228
|
| >d1r6wa1 c.1.11.2 (A:100-320) O-succinylbenzoate synthase {Escherichia coli [TaxId: 562]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: O-succinylbenzoate synthase species: Escherichia coli [TaxId: 562]
Score = 104 bits (260), Expect = 9e-27
Identities = 39/196 (19%), Positives = 67/196 (34%), Gaps = 11/196 (5%)
Query: 187 PAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEA 245
P + + G K++VG D V+ + PD LDAN + P +
Sbjct: 15 PDDLILKLADM--PGEKVAKVRVGLYEAVRDGMVVNLLLEAIPDLHLRLDANRAWTPLKG 72
Query: 246 VEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIV 305
+ + + + S + G+++A DES R D
Sbjct: 73 QQFAKYVNPDYRDRI--AFLEEPCKTR---DDSRAFARETGIAIAWDESLREPDFAFVAE 127
Query: 306 KGNLADVINIKLAK-VGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCF 364
+G + IK + E ++ A GL +I +E+ L + ++A L
Sbjct: 128 EG--VRAVVIKPTLTGSLEKVREQVQAAHALGLTAVISSSIESSLGLTQLARIAAWLTPD 185
Query: 365 KFIDLDTPLLLSEDPV 380
LDT L+ V
Sbjct: 186 TIPGLDTLDLMQAQQV 201
|
| >d1jdfa1 c.1.11.2 (A:138-446) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Score = 104 bits (261), Expect = 5e-26
Identities = 40/231 (17%), Positives = 77/231 (33%), Gaps = 7/231 (3%)
Query: 183 PIVSPAEAAELASK-YRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGY 240
++P LA Y K GF KLK G +E+ E + A+ P + LD N +
Sbjct: 44 EAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAW 103
Query: 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD 300
EA+++ + L E P + V + G+ A +
Sbjct: 104 SLNEAIKIGKYLKGS---LAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQ 160
Query: 301 VKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG 360
+ + D+ + G++ + ++ GL +++ H++A
Sbjct: 161 MGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSDNHFDISLAMFTHVAAA 220
Query: 361 L-GCFKFIDLDTPLLLSEDPVLDG-YEVSGAVYKFTNARGHGGFLHWDNIA 409
G ID + +E+ G + + G G + D +
Sbjct: 221 APGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVEIDMDQVM 271
|
| >d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Score = 97.4 bits (242), Expect = 8e-24
Identities = 34/220 (15%), Positives = 73/220 (33%), Gaps = 23/220 (10%)
Query: 181 TIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRA--------------V 226
+ A ++ K+G ++ +E ++ +R
Sbjct: 16 DRYDNVDKMIIKEADVLPHALINNVEEKLGLKGEKLLEYVKWLRDRIIKLRVREDYAPIF 75
Query: 227 HPDSSFILDANEGYKPQEAVEVLEKLYEMGVT-PVLFEQPVHRDDW----EGLGHVSHIA 281
H D + A + + ++ L E + E P+ +D E + +
Sbjct: 76 HIDVYGTIGAAFDVDIKAMADYIQTLAEAAKPFHLRIEGPMDVEDRQKQMEAMRDLRAEL 135
Query: 282 KDK-FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNL 339
+ + ADE C +++DVK ++ IK +G V + I +A+G+
Sbjct: 136 DGRGVDAELVADEWCNTVEDVKFFTDNKAGHMVQIKTPDLGGVNNIADAIMYCKANGMGA 195
Query: 340 MIGG-MVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSED 378
GG ET + ++ G + + + + E
Sbjct: 196 YCGGTCNETNRSAEVTTNIGMACGA-RQVLAKPGMGVDEG 234
|
| >d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Score = 95.4 bits (237), Expect = 4e-23
Identities = 34/207 (16%), Positives = 66/207 (31%), Gaps = 23/207 (11%)
Query: 194 ASKYRKQGFTTLKLKVGK---NLKEDIEVLR-AIRAV----------HPDSSFILDANEG 239
++ K+G L+E + L I ++ H D +
Sbjct: 29 VDVLPHALINNVEEKLGFKGEKLREYVRWLSDRILSLRSSPRYHPTLHIDVYGTIGLIFD 88
Query: 240 YKPQEAVEVLEKLYEMGVT-PVLFEQPV----HRDDWEGLGHV-SHIAKDKFGVSVAADE 293
P E + L + P+ E PV D L + + + GV + ADE
Sbjct: 89 MDPVRCAEYIASLEKEAQGLPLYIEGPVDAGNKPDQIRMLTAITKELTRLGSGVKIVADE 148
Query: 294 SCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG-MVETRLAM 351
C + D+ ++ IK +G + ++ + G+ GG ET ++
Sbjct: 149 WCNTYQDIVDFTDAGSCHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQGGTCNETEISA 208
Query: 352 GFAGHLSAGLGCFKFIDLDTPLLLSED 378
H++ + + + E
Sbjct: 209 RTCVHVALAARP-MRMLIKPGMGFDEG 234
|
| >d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Score = 89.6 bits (221), Expect = 4e-21
Identities = 57/239 (23%), Positives = 102/239 (42%), Gaps = 12/239 (5%)
Query: 174 NTITTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSF 232
+I ++I + + +L ++Y QG+ +KLK+ N +DI+ + A+R P S
Sbjct: 3 ESIKVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIAPN--KDIQFVEAVRKSFPKLSL 60
Query: 233 ILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD 292
+ DAN Y ++ + + EQP D+ + K + + D
Sbjct: 61 MADANSAYNREDFL---LLKELDQYDLEMIEQPFGTKDFVDHAWLQKQLKTRICL----D 113
Query: 293 ESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLAM 351
E+ RS+ DV++ IN+KLA+V G+ AL+I E + + + GGM+E +
Sbjct: 114 ENIRSVKDVEQAHSIGSCRAINLKLARVGGMSSALKIAEYCALNEILVWCGGMLEAGVGR 173
Query: 352 GFAGHLSAGLGCFKFIDL-DTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409
L+A D+ + +ED V +E++ K G G L +
Sbjct: 174 AHNIALAARNEFVFPGDISASNRFFAEDIVTPAFELNQGRLKVPTNEGIGVTLDLKVLK 232
|
| >d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Muconate-lactonizing enzyme species: Pseudomonas putida [TaxId: 303]
Score = 86.6 bits (213), Expect = 5e-20
Identities = 51/243 (20%), Positives = 97/243 (39%), Gaps = 11/243 (4%)
Query: 172 VSNTITTDITIPIVSPAE-AAELASKYRKQGFTTLKLKVGKN-LKEDIEVLRAIR-AVHP 228
V +++ T+ A AE + KLK+G N +++D++ + I+ +
Sbjct: 2 VRDSLEVAWTLASGDTARDIAEARHMLEIRRHRVFKLKIGANPVEQDLKHVVTIKRELGD 61
Query: 229 DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288
+S +D N+ + +A+ + L + L EQP+ R + +
Sbjct: 62 SASVRVDVNQYWDESQAIRACQVLGDN--GIDLIEQPISRINR----GGQVRLNQRTPAP 115
Query: 289 VAADESCRSLDDVKKIVKGNLADVINIKL-AKVGVLGALEIIEVVRASGLNLMIGGMVET 347
+ ADES S++D + A + +K+ G L ++ A+G+ L G M+E
Sbjct: 116 IMADESIESVEDAFSLAADGAASIFALKIAKNGGPRAVLRTAQIAEAAGIGLYGGTMLEG 175
Query: 348 RLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWD 406
+ + H L + +L PLLL+E+ V + + G G L
Sbjct: 176 SIGTLASAHAFLTLRQLTWGTELFGPLLLTEEIVNEPPQYRDFQLHIPRTPGLGLTLDEQ 235
Query: 407 NIA 409
+A
Sbjct: 236 RLA 238
|
| >d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Score = 83.9 bits (206), Expect = 3e-19
Identities = 48/243 (19%), Positives = 96/243 (39%), Gaps = 11/243 (4%)
Query: 172 VSNTITTDITIPIVSPAE-AAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAI-RAVHP 228
+ + I T+ ++ K+K+G ++ ++D+ + A+ ++
Sbjct: 2 LRSAIPIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGFRSPQDDLIHMEALSNSLGS 61
Query: 229 DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288
+ +D N+ + Q A + L EQPV R++ D V+
Sbjct: 62 KAYLRVDVNQAWDEQVASVY--IPELEALGVELIEQPVGRENT----QALRRLSDNNRVA 115
Query: 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL-GALEIIEVVRASGLNLMIGGMVET 347
+ ADES +L + + DV ++KL +G + +I V ASG+ G M+++
Sbjct: 116 IMADESLSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASGIASYGGTMLDS 175
Query: 348 RLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWD 406
+ A L + + F +L P +L++ + E+ + GHG L D
Sbjct: 176 TIGTSVALQLYSTVPSLPFGCELIGPFVLADTLSHEPLEIRDYELQVPTGVGHGMTLDED 235
Query: 407 NIA 409
+
Sbjct: 236 KVR 238
|
| >d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Score = 82.7 bits (203), Expect = 9e-19
Identities = 52/239 (21%), Positives = 92/239 (38%), Gaps = 12/239 (5%)
Query: 174 NTITTDITIPIVSPAEA-AELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSF 232
+ +++ I + +A +L ++ +QG+ +KLK+ D++ +RA R PD
Sbjct: 3 EQVEVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIKPG--WDVQPVRATREAFPDIRL 60
Query: 233 ILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD 292
+DAN Y + EQP+ DD + + D
Sbjct: 61 TVDANSAYTLA---DAGRLRQLDEYDLTYIEQPLAWDDL----VDHAELARRIRTPLCLD 113
Query: 293 ESCRSLDDVKKIVKGNLADVINIKLAKVGVL-GALEIIEVVRASGLNLMIGGMVETRLAM 351
ES S D +K + VIN+K+A+VG + + +V ++ G + GGM+E+ +
Sbjct: 114 ESVASASDARKALALGAGGVINLKVARVGGHAESRRVHDVAQSFGAPVWCGGMLESGIGR 173
Query: 352 GFAGHLSAGLGCFKFIDL-DTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409
HLS D D + + E + G G L + +A
Sbjct: 174 AHNIHLSTLSNFRLPGDTSSASRYWERDLIQEPLEAVDGLMPVPQGPGTGVTLDREFLA 232
|
| >d1wuea1 c.1.11.2 (A:1127-1367) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Score = 81.2 bits (199), Expect = 3e-18
Identities = 47/239 (19%), Positives = 92/239 (38%), Gaps = 12/239 (5%)
Query: 174 NTITTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSF 232
I I++ I + + ++G+ +KLK+ D+E + IR P+
Sbjct: 3 RKIPVGISLGIQEDLPQLLKQVQLAVEKGYQRVKLKIRPG--YDVEPVALIRQHFPNLPL 60
Query: 233 ILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD 292
++DAN Y + ++ + + EQP DD+ + + + D
Sbjct: 61 MVDANSAYTLADLPQLQRLDHYQ---LAMIEQPFAADDF----LDHAQLQRELKTRICLD 113
Query: 293 ESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALEIIEVVRASGLNLMIGGMVETRLAM 351
E+ RSL D + + IN+K+ + G+ AL+I + + L + +GGM E+ +
Sbjct: 114 ENIRSLKDCQVALALGSCRSINLKIPRVGGIHEALKIAAFCQENDLLVWLGGMFESGVGR 173
Query: 352 GFAGHLSAGLGCFKFIDLD-TPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409
++ D+ T ED + + + + G G L N+
Sbjct: 174 ALNLQFASQPTFSFPGDISATERYFYEDIITEPFILEQGTMTVPQGLGIGVTLSQTNLL 232
|
| >d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Score = 80.3 bits (197), Expect = 7e-18
Identities = 53/230 (23%), Positives = 92/230 (40%), Gaps = 13/230 (5%)
Query: 186 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQE 244
S + LA + GF T+KLKVG N+++DI R R A+ PD + +DAN+ +
Sbjct: 15 SDEKLVRLAKEAVADGFRTIKLKVGANVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGP 74
Query: 245 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 304
A++ + +L E + E+P DD G + V V+ E ++ K++
Sbjct: 75 AIDWMRQLAEFDIAW--IEEPTSPDDVLGHAAIRQ---GITPVPVSTGEHTQNRVVFKQL 129
Query: 305 VKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGC 363
++ D+I I A+VG V L I+ + G+ + + HL+
Sbjct: 130 LQAGAVDLIQIDAARVGGVNENLAILLLAAKFGVRVFPHAGGVGLCEL--VQHLAMADFV 187
Query: 364 FKFIDLDTPLL----LSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409
++ + LD + Y G +H +IA
Sbjct: 188 AITGKMEDRAIEFVDHLHQHFLDPVRIQHGRYLAPEVPGFSAEMHPASIA 237
|
| >d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Score = 76.2 bits (186), Expect = 2e-16
Identities = 48/240 (20%), Positives = 92/240 (38%), Gaps = 10/240 (4%)
Query: 172 VSNTITTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDS 230
V +++ +++ I+ + + ++ Y +G+ +KLK+ D+E +RA+R D
Sbjct: 1 VRDSVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIEPG--WDVEPVRAVRERFGDD 58
Query: 231 SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVA 290
+ L +L +L EQP+ +D G + + +
Sbjct: 59 VLLQVDANTAYTLGDAPQLARLDPF--GLLLIEQPLEEEDVLGHAEL----ARRIQTPIC 112
Query: 291 ADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRL 349
DES S +K ++NIK +VG L A + +V A G+ + GGM+ET L
Sbjct: 113 LDESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHGIPVWCGGMIETGL 172
Query: 350 AMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409
L++ D + + + + +SG G G + +
Sbjct: 173 GRAANVALASLPNFTLPGDTSASDRFYKTDITEPFVLSGGHLPVPTGPGLGVAPIPELLD 232
|
| >d1muca2 d.54.1.1 (A:4-130) Muconate-lactonizing enzyme (cis muconate cycloisomerase) {Pseudomonas putida [TaxId: 303]} Length = 127 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Muconate-lactonizing enzyme (cis muconate cycloisomerase) species: Pseudomonas putida [TaxId: 303]
Score = 72.6 bits (177), Expect = 3e-16
Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 1/125 (0%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
++R + +++P I P +A + Q V +R+ S+G G GEA + + +
Sbjct: 3 IERIDAIIVDLPTIRPHKLAMHTMQQQTLVVLRVRCSDGVEGIGEATTIGGLAYGYESPE 62
Query: 108 MVKASEACEVLKESPAMALGSVFGVV-AGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
+KA+ + +A ++ + ++ +E AL+DA K + +P+
Sbjct: 63 GIKANIDAHLAPALIGLAADNINAAMLKLDKLAKGNTFAKSGIESALLDAQGKRLGLPVS 122
Query: 167 RLFGG 171
L GG
Sbjct: 123 ELLGG 127
|
| >d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Score = 74.3 bits (181), Expect = 7e-16
Identities = 54/243 (22%), Positives = 100/243 (41%), Gaps = 11/243 (4%)
Query: 172 VSNTITTDITIPIVSPAE-AAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAI-RAVHP 228
+ +I T+ A + K+K+G + +D+E +R+I +AV
Sbjct: 2 MRTSIPIAWTLASGDTARDIDSALEMIETRRHNRFKVKLGARTPAQDLEHIRSIVKAVGD 61
Query: 229 DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288
+S +D N+G+ Q A + +L E GV V P ++ GV+
Sbjct: 62 RASVRVDVNQGWDEQTASIWIPRLEEAGVELVEQPVPRANFGAL------RRLTEQNGVA 115
Query: 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVET 347
+ ADES SL ++ + + D ++KL +G + L++ V A+G++ G M+++
Sbjct: 116 ILADESLSSLSSAFELARDHAVDAFSLKLCNMGGIANTLKVAAVAEAAGISSYGGTMLDS 175
Query: 348 RLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWD 406
+ A H+ A L + +L P +L + E+ G G L D
Sbjct: 176 TVGTAAALHVYATLPSLPYGCELIGPWVLGDRLTQQDLEIKDFEVHLPLGSGLGVDLDHD 235
Query: 407 NIA 409
+
Sbjct: 236 KVR 238
|
| >d1jpma2 d.54.1.1 (A:1-125) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Score = 71.1 bits (173), Expect = 9e-16
Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 3/125 (2%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAE-DQQT 106
+ R E + VPL PF A + E+V +RI +G VGWGEAP +T +
Sbjct: 3 IIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSI 62
Query: 107 AMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
L ++ + LL G+ A +AAVEMAL D A+ +PL+
Sbjct: 63 ESAIHHVLKPALLGKSLAGYEAILHDIQHLLTGNMSA--KAAVEMALYDGWAQMCGLPLY 120
Query: 167 RLFGG 171
++ GG
Sbjct: 121 QMLGG 125
|
| >d1wufa2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Score = 69.0 bits (168), Expect = 6e-15
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 4/125 (3%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP--HVTAEDQQ 105
Q+A +PL+APF + L + I + G G+GE P T E
Sbjct: 3 FQKARLIHAELPLLAPFKTSYGELKSKDFYIIELINEEGIHGYGELEAFPLPDYTEETLS 62
Query: 106 TAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPL 165
+A++ E L + + + G++ A +AAVE+A+ DA AK L
Sbjct: 63 SAILIIKEQLLPLLAQRKIRKPEEIQELFSWIQGNEMA--KAAVELAVWDAFAKMEKRSL 120
Query: 166 WRLFG 170
++ G
Sbjct: 121 AKMIG 125
|
| >d1wuea2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Score = 68.1 bits (165), Expect = 1e-14
Identities = 29/125 (23%), Positives = 44/125 (35%), Gaps = 4/125 (3%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP--HVTAEDQQ 105
+Q E + +PL PF + RL++ I G G+GE E
Sbjct: 3 IQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQGFGELVAFEQPDYVQETLV 62
Query: 106 TAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPL 165
T + L + A+ + + GH +AA+E A+ D AK L
Sbjct: 63 TERFIIQQHLIPLLLTEAIEQPQEVSTIFEEVKGHWMG--KAALETAIWDLYAKRQQKSL 120
Query: 166 WRLFG 170
FG
Sbjct: 121 TEFFG 125
|
| >d2chra2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Score = 68.0 bits (165), Expect = 1e-14
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 2/125 (1%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+ E ++VP P ++ + + Q V +R+ S G VG GE + +
Sbjct: 3 IDAIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVY-SEGLVGVGEGGSVGGPVWSAECAE 61
Query: 108 MVKASEACEVLKESPAMALGSVFGVVA-GLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
+K + +V G + AS +AAVEMAL+D A+++ + +
Sbjct: 62 TIKIIVERYLAPHLLGTDAFNVSGALQTMARAVTGNASAKAAVEMALLDLKARALGVSIA 121
Query: 167 RLFGG 171
L GG
Sbjct: 122 ELLGG 126
|
| >d1r0ma2 d.54.1.1 (A:6-132) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} Length = 127 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Score = 66.4 bits (161), Expect = 4e-14
Identities = 26/124 (20%), Positives = 39/124 (31%), Gaps = 1/124 (0%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
++ AE +PL F + + I G G E + ++ A
Sbjct: 5 IEAAEIVVARLPLKFRFETSFGVQTHKVVP-LLILHGEGVQGVAEGTMEARPMYREETIA 63
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWR 167
L + V L RA VEMA D A+++ +PL
Sbjct: 64 GALDLLRGTFLPAILGQTFANPEAVSDALGSYRGNRMARAMVEMAAWDLWARTLGVPLGT 123
Query: 168 LFGG 171
L GG
Sbjct: 124 LLGG 127
|
| >d1jpdx2 d.54.1.1 (X:-2-113) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]} Length = 116 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: L-Ala-D/L-Glu epimerase species: Escherichia coli [TaxId: 562]
Score = 63.5 bits (154), Expect = 3e-13
Identities = 26/117 (22%), Positives = 36/117 (30%), Gaps = 11/117 (9%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
PL PF IA + V + +E G G GE P D S
Sbjct: 10 FEEAWPLHTPFVIARGSRSEARVVVVELE-EEGIKGTGECTPYPRYGESDASVMAQIMSV 68
Query: 114 ACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG 170
++ K L + + R A++ AL D A+ L L G
Sbjct: 69 VPQLEKGLTREELQKILP----------AGAARNALDCALWDLAARRQQQSLADLIG 115
|
| >d2gdqa2 d.54.1.1 (A:4-118) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Score = 62.5 bits (151), Expect = 7e-13
Identities = 28/124 (22%), Positives = 41/124 (33%), Gaps = 11/124 (8%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+ R E PL L P+ A IRI +G GWGE
Sbjct: 3 IVRIETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGIDGWGECVDWLPALHVGFTKR 62
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWR 167
++ + + + HQ A +AV MAL + AK+ +
Sbjct: 63 IIPFLLGKQAGSRLSLVRT---------IQKWHQRA--ASAVSMALTEIAAKAADCSVCE 111
Query: 168 LFGG 171
L+GG
Sbjct: 112 LWGG 115
|
| >d1nu5a2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Score = 62.2 bits (150), Expect = 1e-12
Identities = 24/126 (19%), Positives = 52/126 (41%), Gaps = 4/126 (3%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
++ ++VP P ++ + + + V ++++ + G VG GE + T +
Sbjct: 3 IEAISTTIVDVPTRRPLQMSFTTVHKQSYVIVQVK-AGGLVGIGEGGSVGGPTWGSESAE 61
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGH--QFASVRAAVEMALIDAVAKSVSMPL 165
+K L S L+ S +AA+++AL D A+++++ +
Sbjct: 62 TIKVI-IDNYLAPLLVGKDASNLSQARVLMDRAVTGNLSAKAAIDIALHDLKARALNLSI 120
Query: 166 WRLFGG 171
L GG
Sbjct: 121 ADLIGG 126
|
| >d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Score = 65.0 bits (157), Expect = 1e-12
Identities = 34/230 (14%), Positives = 72/230 (31%), Gaps = 15/230 (6%)
Query: 186 SPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQ 243
+ Y +G+ +K+K+G ++ED + A+ + D+ +DAN + +
Sbjct: 20 GLSMLRGEMRGYLDRGYNVVKMKIGGAPIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLE 79
Query: 244 EAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 303
+ + L + +E+ D+ ++ + + ++
Sbjct: 80 TGIAYAKMLRDY--PLFWYEEVGDPLDYALQAALAEFYPGPMATGENLFSHQDARNLLRY 137
Query: 304 IVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNL---MIGGMVETRLAMGFAGHLSA 359
D + A G+ +EV++ G + + G + L + L
Sbjct: 138 GGMRPDRDWLQFDCALSYGLCEYQRTLEVLKTHGWSPSRCIPHGGHQMSLNIAAGLGLG- 196
Query: 360 GLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409
G + DL P D V V + G G D
Sbjct: 197 --GNESYPDLFQPYGGFPDGV----RVENGHITMPDLPGIGFEGKSDLYK 240
|
| >d2mnra2 d.54.1.1 (A:3-132) Mandelate racemase {Pseudomonas putida [TaxId: 303]} Length = 130 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Score = 61.8 bits (149), Expect = 2e-12
Identities = 25/124 (20%), Positives = 39/124 (31%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+ R +NVPL P A + V I + S G VG V + +
Sbjct: 4 ITGLRTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYTPVALKSLKQL 63
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWR 167
+ + +P + A ++MA DA+ K PL +
Sbjct: 64 LDDMAAMIVNEPLAPVSLEAMLAKRFCLAGYTGLIRMAAAGIDMAAWDALGKVHETPLVK 123
Query: 168 LFGG 171
L G
Sbjct: 124 LLGA 127
|
| >d1sjda2 d.54.1.1 (A:1-125) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Score = 61.5 bits (148), Expect = 2e-12
Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 3/124 (2%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGE-APVLPHVTAEDQQT 106
+ E R + +PL+APF + E + +R G P ++E
Sbjct: 3 LSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAGEGWGECVTMAGPLYSSEYNDG 62
Query: 107 AMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
A + + + GH+ A + A+EMA++DA ++
Sbjct: 63 AEHVLRHYLIPALLAAEDITAAKVTPLLAKFKGHRMA--KGALEMAVLDAELRAHERSFA 120
Query: 167 RLFG 170
G
Sbjct: 121 AELG 124
|
| >d1r6wa2 d.54.1.1 (A:-2-99) O-succinylbenzoate synthase {Escherichia coli [TaxId: 562]} Length = 101 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: O-succinylbenzoate synthase species: Escherichia coli [TaxId: 562]
Score = 60.7 bits (147), Expect = 3e-12
Identities = 21/107 (19%), Positives = 34/107 (31%), Gaps = 15/107 (14%)
Query: 49 QRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAM 108
+ A+ +P+ A + RL + + + + GWGE LP + E + A
Sbjct: 4 RSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCLR-EGEREGWGEISPLPGFSQETWEEAQ 62
Query: 109 VKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALID 155
+AG Q SV V AL +
Sbjct: 63 SVLLAWVN--------------NWLAGDCELPQMPSVAFGVSCALAE 95
|
| >d1tzza2 d.54.1.1 (A:1006-1145) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Score = 61.0 bits (147), Expect = 5e-12
Identities = 21/130 (16%), Positives = 41/130 (31%), Gaps = 12/130 (9%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
R + P+ +P A ++ + + G + Q +++
Sbjct: 7 REITKPISSPIRNAYIDFTKMTTSLVAVVTDVVREGKRVVGYGFNSNGRYGQGGLIRERF 66
Query: 114 ACEVLKESPAMALGSVFGVVAGLL------------PGHQFASVRAAVEMALIDAVAKSV 161
A +L+ P L + + + ++MA+ DAVAK
Sbjct: 67 ASRILEADPKKLLNEAGDNLDPDKVWAAMMINEKPGGHGERSVAVGTIDMAVWDAVAKIA 126
Query: 162 SMPLWRLFGG 171
PL+RL
Sbjct: 127 GKPLFRLLAE 136
|
| >d2gdqa1 c.1.11.2 (A:119-374) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Score = 62.4 bits (150), Expect = 1e-11
Identities = 29/231 (12%), Positives = 72/231 (31%), Gaps = 11/231 (4%)
Query: 186 SPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQE 244
+ + K+GF +K+K+G + KED+ + A++ S ++
Sbjct: 21 WISRSVSNVEAQLKKGFEQIKVKIGGTSFKEDVRHINALQHTAGSSITMILDANQSYDAA 80
Query: 245 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 304
A E+ + E+P+ D + + E+ + +
Sbjct: 81 AAFKWERYFSEWTNIGWLEEPLPFDQPQDYAMLRSRLSVPVAG----GENMKGPAQYVPL 136
Query: 305 VKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCF 364
+ D+I + V + + + L+ +A A L +
Sbjct: 137 LSQRCLDIIQPDVMHVNGIDEFRDCLQLARYFGVRASAHAYDGSLSRLYALFAQACLPPW 196
Query: 365 KFIDLDTPLLLSEDPVLDGY------EVSGAVYKFTNARGHGGFLHWDNIA 409
+ D + D + + + + S + +G G ++ + +
Sbjct: 197 SKMKNDHIEPIEWDVMENPFTDLVSLQPSKGMVHIPKGKGIGTEINMEIVN 247
|
| >d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} Length = 278 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Score = 59.3 bits (142), Expect = 1e-10
Identities = 37/258 (14%), Positives = 82/258 (31%), Gaps = 33/258 (12%)
Query: 179 DITIPIVSPAEAAELASKYRKQGFTTLKLKVG------------------------KNLK 214
D +V+P E AE A G+ +K+ LK
Sbjct: 19 DKNHILVTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLK 78
Query: 215 EDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEG 273
+ A+R A+ D+ I++ + A++ + + + L+E+P+H + +
Sbjct: 79 MGEARIAAMREAMGDDADIIVEIHSLLGTNSAIQFAKAIEKY--RIFLYEEPIHPLNSDN 136
Query: 274 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVR 333
+ VS + +A E + +++++ V L G + + I
Sbjct: 137 MQKVSR----STTIPIATGERSYTRWGYRELLEKQSIAVAQPDLCLCGGITEGKKICDYA 192
Query: 334 ASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF--IDLDTPLLLSEDPVLDGYEVSGAVY 391
+ + ++ A H+ + F + + Y+ Y
Sbjct: 193 NIYDTTVQVHVCGGPVSTVAALHMETAIPNFIIHEHHTNAMKASIRELCTHDYQPENGYY 252
Query: 392 KFTNARGHGGFLHWDNIA 409
G G L+ + +
Sbjct: 253 VAPEQPGLGQELNDEVVK 270
|
| >d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 58.2 bits (139), Expect = 3e-10
Identities = 32/227 (14%), Positives = 74/227 (32%), Gaps = 19/227 (8%)
Query: 173 SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-------KNLKEDIEVLRAIRA 225
S ++ + +P + A K+G+ +KL ++K D++ A+R
Sbjct: 10 SIMCGDELEGGLATPEDYGRFAETLVKRGYKGIKLHTWMPPVSWAPDVKMDLKACAAVRE 69
Query: 226 VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF 285
++ + + L + + E+P+ ++ +
Sbjct: 70 AVGPDIRLMIDAFHWYSRTDALALGR-GLEKLGFDWIEEPMDEQSLS---SYKWLSDNLD 125
Query: 286 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGM 344
V + + + +K D++ + V G+ AL+ + + A G+ + G
Sbjct: 126 IPVVGPESAAGKHWHRAEWIKAGACDILRTGVNDVGGITPALKTMHLAEAFGMECEVHGN 185
Query: 345 VETRLAMGFAGHLSAGLGCF------KFIDLDTPLLLSEDPVL-DGY 384
L + A ++ D L DP+ DG+
Sbjct: 186 TAMNLHVVAATKNCRWYERGLLHPFLEYDDGHDYLKSLSDPMDRDGF 232
|
| >d1bqga2 d.54.1.1 (A:12-143) D-glucarate dehydratase {Pseudomonas putida [TaxId: 303]} Length = 132 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: D-glucarate dehydratase species: Pseudomonas putida [TaxId: 303]
Score = 55.5 bits (133), Expect = 3e-10
Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 5/121 (4%)
Query: 55 PLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTA--EDQQTAMV-KA 111
P+ ++ + + + S+G VG GE P + ED + ++ ++
Sbjct: 12 PVAGHDSMLLNLSGAHGPLFTRNILILTDSSGHVGVGEVPGGEGIRKTLEDARHLLINQS 71
Query: 112 SEACEVLKESP--AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLF 169
+ L A A V G AVE AL+D + + + +P+ L
Sbjct: 72 IGNYQSLLNKVRNAFADRDVGGRGLQTFDLRIAVHAVTAVESALLDLLGQHLQVPVAALL 131
Query: 170 G 170
G
Sbjct: 132 G 132
|
| >d1yeya2 d.54.1.1 (A:2-140) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} Length = 139 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Score = 54.8 bits (131), Expect = 7e-10
Identities = 22/133 (16%), Positives = 36/133 (27%), Gaps = 11/133 (8%)
Query: 52 ENRPLNVPLIAP--FTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
E + P + A + + + G V D QTA V
Sbjct: 7 ETHDVRFPTSRELDGSDAMNPDPDYSAAYVVLRTDGAEDLAGYGLVFTIGRGNDVQTAAV 66
Query: 110 KA---------SEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKS 160
A + + A L + + AV A D A++
Sbjct: 67 AALAEHVVGLSVDKVIADLGAFARRLTNDSQLRWLGPEKGVMHMAIGAVINAAWDLAARA 126
Query: 161 VSMPLWRLFGGVS 173
+ PLWR ++
Sbjct: 127 ANKPLWRFIAELT 139
|
| >d2gl5a2 d.54.1.1 (A:1-122) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Score = 53.3 bits (127), Expect = 1e-09
Identities = 22/125 (17%), Positives = 46/125 (36%), Gaps = 10/125 (8%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
E + + V IR+ +G G GE + A+ ++
Sbjct: 5 SIEVFDCELKKRDQT------MSSYNPVLIRVNTDSGLSGIGEVGLAYGAGAK-AGVGII 57
Query: 110 KASEACEVLKESPAMALGS---VFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLW 166
+ V ++ + G+ G+ F + +A+++AL D K + +P++
Sbjct: 58 RDLAPLIVGEDPLNIEKIWEFFFRKTFWGMGGGNVFYAGMSAIDIALWDIKGKYLGVPVY 117
Query: 167 RLFGG 171
+L GG
Sbjct: 118 QLLGG 122
|
| >d1jdfa2 d.54.1.1 (A:5-137) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Score = 53.6 bits (128), Expect = 1e-09
Identities = 15/121 (12%), Positives = 37/121 (30%), Gaps = 5/121 (4%)
Query: 55 PLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEA 114
P+ ++ + + I+ ++G G GE P + + + +
Sbjct: 13 PVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKT 72
Query: 115 CEVLKESPAMALGSVF-----GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLF 169
K + + G V +E A++D + + + + + L
Sbjct: 73 LGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLL 132
Query: 170 G 170
G
Sbjct: 133 G 133
|
| >d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Score = 55.0 bits (131), Expect = 2e-09
Identities = 40/231 (17%), Positives = 77/231 (33%), Gaps = 16/231 (6%)
Query: 181 TIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIR-AVHPDSSFILDANE 238
+ + A E A + GF +K K+G L +D+ V+R+IR AV D ++D N+
Sbjct: 7 SHSLDGVKLATERAVTAAELGFRAVKTKIGYPALDQDLAVVRSIRQAVGDDFGIMVDYNQ 66
Query: 239 GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSL 298
A++ + L + E+P + D+EG + +
Sbjct: 67 SLDVPAAIKRSQALQQE--GVTWIEEPTLQHDYEGHQRIQSKLNVPV---QMGENWLGPE 121
Query: 299 DDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLS 358
+ K + G + + GV G + + + G+ + E + A +
Sbjct: 122 EMFKALSIGACRLAMPDAMKIGGVTGWIRASALAQQFGIPMSSHLFQEISAHLLAATPTA 181
Query: 359 AGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409
+ +DL ++ G + G G I
Sbjct: 182 ---HWLERLDLAGSVIEPTLTFEGGN------AVIPDLPGVGIIWREKEIG 223
|
| >d1rvka2 d.54.1.1 (A:1-126) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 47.9 bits (113), Expect = 2e-07
Identities = 19/124 (15%), Positives = 34/124 (27%), Gaps = 12/124 (9%)
Query: 54 RPLNVPLIAPFTIATSRLD----QVENVAIRIELSNGCVGWGEAPVLPHVTA--EDQQTA 107
R A QVE + + +G G E
Sbjct: 9 RVFRTTTRRHSDSAGHAHPGPAHQVEQAMLTVRTEDGQEGHSFTAPEIVRPHVIEKFVKK 68
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWR 167
++ + + + +A A V+ AL D +S+ P+++
Sbjct: 69 VLIGEDHRDRERLWQDLAHWQRGS------AAQLTDRTLAVVDCALWDLAGRSLGQPVYK 122
Query: 168 LFGG 171
L GG
Sbjct: 123 LIGG 126
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 409 | |||
| d1muca1 | 242 | Muconate-lactonizing enzyme {Pseudomonas putida [T | 100.0 | |
| d2chra1 | 244 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 100.0 | |
| d1nu5a1 | 243 | Chlormuconate cycloisomerase {Pseudomonas sp. p51 | 100.0 | |
| d1jpma1 | 234 | L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: | 100.0 | |
| d1wufa1 | 244 | N-acylamino acid racemase {Listeria innocua [TaxId | 100.0 | |
| d1sjda1 | 242 | N-acylamino acid racemase {Amycolatopsis sp. [TaxI | 100.0 | |
| d2gl5a1 | 278 | Putative dehydratase protein STM2273 {Salmonella t | 100.0 | |
| d1r0ma1 | 243 | N-acylamino acid racemase {Deinococcus radiodurans | 100.0 | |
| d1wuea1 | 241 | N-acylamino acid racemase {Enterococcus faecalis [ | 100.0 | |
| d2gdqa1 | 256 | Hypothetical protein YitF {Bacillus subtilis [TaxI | 100.0 | |
| d2mnra1 | 227 | Mandelate racemase {Pseudomonas putida [TaxId: 303 | 100.0 | |
| d1rvka1 | 255 | Hypothetical protein Atu3453 {Agrobacterium tumefa | 100.0 | |
| d1yeya1 | 252 | RTS beta protein {Xanthomonas campestris pv. campe | 100.0 | |
| d1jdfa1 | 309 | D-glucarate dehydratase {Escherichia coli [TaxId: | 100.0 | |
| d1tzza1 | 247 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 100.0 | |
| d1jpdx1 | 208 | L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: | 100.0 | |
| d1r6wa1 | 221 | O-succinylbenzoate synthase {Escherichia coli [Tax | 100.0 | |
| d1kcza1 | 253 | beta-Methylaspartase {Clostridium tetanomorphum [T | 99.97 | |
| d1jpma2 | 125 | L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: | 99.96 | |
| d1kkoa1 | 251 | beta-Methylaspartase {Citrobacter amalonaticus [Ta | 99.96 | |
| d1nu5a2 | 126 | Chlormuconate cycloisomerase {Pseudomonas sp. p51 | 99.95 | |
| d2chra2 | 126 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 99.95 | |
| d1wufa2 | 126 | N-acylamino acid racemase {Listeria innocua [TaxId | 99.93 | |
| d2gdqa2 | 115 | Hypothetical protein YitF {Bacillus subtilis [TaxI | 99.93 | |
| d1muca2 | 127 | Muconate-lactonizing enzyme (cis muconate cycloiso | 99.92 | |
| d1wuea2 | 126 | N-acylamino acid racemase {Enterococcus faecalis [ | 99.91 | |
| d2mnra2 | 130 | Mandelate racemase {Pseudomonas putida [TaxId: 303 | 99.91 | |
| d1sjda2 | 125 | N-acylamino acid racemase {Amycolatopsis sp. [TaxI | 99.91 | |
| d2gl5a2 | 122 | Putative dehydratase protein STM2273 {Salmonella t | 99.91 | |
| d1rvka2 | 126 | Hypothetical protein Atu3453 {Agrobacterium tumefa | 99.91 | |
| d1r0ma2 | 127 | N-acylamino acid racemase {Deinococcus radiodurans | 99.9 | |
| d1bqga2 | 132 | D-glucarate dehydratase {Pseudomonas putida [TaxId | 99.87 | |
| d1jdfa2 | 133 | D-glucarate dehydratase {Escherichia coli [TaxId: | 99.86 | |
| d1jpdx2 | 116 | L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: | 99.86 | |
| d1tzza2 | 140 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 99.85 | |
| d1yeya2 | 139 | RTS beta protein {Xanthomonas campestris pv. campe | 99.8 | |
| d1r6wa2 | 101 | O-succinylbenzoate synthase {Escherichia coli [Tax | 99.74 | |
| d2akza1 | 294 | Enolase {Human (Homo sapiens), gamma isoform [TaxI | 99.11 | |
| d2al1a1 | 295 | Enolase {Baker's yeast (Saccharomyces cerevisiae) | 99.08 | |
| d2fyma1 | 292 | Enolase {Escherichia coli [TaxId: 562]} | 99.0 | |
| d1w6ta1 | 296 | Enolase {Streptococcus pneumoniae [TaxId: 1313]} | 99.0 | |
| d2ptza1 | 291 | Enolase {Trypanosoma brucei [TaxId: 5691]} | 98.97 | |
| d1w6ta2 | 137 | Enolase {Streptococcus pneumoniae [TaxId: 1313]} | 98.65 | |
| d2ptza2 | 139 | Enolase {Trypanosoma brucei [TaxId: 5691]} | 98.46 | |
| d2fyma2 | 139 | Enolase {Escherichia coli [TaxId: 562]} | 98.45 | |
| d2al1a2 | 141 | Enolase {Baker's yeast (Saccharomyces cerevisiae) | 98.1 | |
| d1pdza2 | 139 | Enolase {European lobster (Homarus vulgaris) [TaxI | 97.89 | |
| d2akza2 | 139 | Enolase {Human (Homo sapiens), gamma isoform [TaxI | 97.81 | |
| d1kcza2 | 160 | beta-Methylaspartase {Clostridium tetanomorphum [T | 97.35 | |
| d1kkoa2 | 160 | beta-Methylaspartase {Citrobacter amalonaticus [Ta | 97.29 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 97.0 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 96.65 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 96.39 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 94.89 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 93.88 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 93.45 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 92.69 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 90.87 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 89.95 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 88.84 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 87.92 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 87.31 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 85.72 | |
| d1q45a_ | 380 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 85.01 |
| >d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Muconate-lactonizing enzyme species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=3.8e-49 Score=368.95 Aligned_cols=231 Identities=23% Similarity=0.301 Sum_probs=213.4
Q ss_pred CCeeeeeeeecCCCHHHHHHHHHHHH-HcCCCeEEEecCC-ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHH
Q 015289 173 SNTITTDITIPIVSPAEAAELASKYR-KQGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVL 249 (409)
Q Consensus 173 ~~~i~~~~~i~~~~~~~~~~~~~~~~-~~Gf~~~KiKvG~-~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~ 249 (409)
+++||+|++++..++++..+++.+.+ ++||++||+|+|. ++++|+++++++|+. ++++.|++|+|++||+++|++++
T Consensus 3 rd~ipv~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~~Di~~i~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~ 82 (242)
T d1muca1 3 RDSLEVAWTLASGDTARDIAEARHMLEIRRHRVFKLKIGANPVEQDLKHVVTIKRELGDSASVRVDVNQYWDESQAIRAC 82 (242)
T ss_dssp CSEEEBCEEECCSCHHHHHHHHHHHHHTTSCSEEEEECSSSCHHHHHHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHH
T ss_pred CceEEEEEEecCCCcHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHhCCCCEEEEecCCCCcHHHHHHHH
Confidence 57899999999988888776665544 5899999999984 689999999999997 79999999999999999999999
Q ss_pred HHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHH
Q 015289 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEI 328 (409)
Q Consensus 250 ~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i 328 (409)
+.|+++++ .|||||++++|++++++|++ ++++||++||++++..++.++++.+++|++|+|++++| +++++++
T Consensus 83 ~~l~~~~i--~~iEeP~~~~d~~~~~~L~~----~~~~pIa~~E~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~i 156 (242)
T d1muca1 83 QVLGDNGI--DLIEQPISRINRGGQVRLNQ----RTPAPIMADESIESVEDAFSLAADGAASIFALKIAKNGGPRAVLRT 156 (242)
T ss_dssp HHHHHTTC--CCEECCBCTTCHHHHHHHHH----HCSSCEEESTTCSSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHH
T ss_pred HHhhhhhH--HHhhcchhhhhhhhhhhhhh----hhhheeecccccccccchhhhhhcccccccccccccchhHHHHHHH
Confidence 99999997 49999999999999999975 67899999999999999999999999999999999997 9999999
Q ss_pred HHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCcee-ccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCC
Q 015289 329 IEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI-DLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDN 407 (409)
Q Consensus 329 ~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~-e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~ 407 (409)
+++|+++|+++++|++.++++++++++|++++++++.+. +++++..+.+++++++++++||++.+|++||||+++|+|+
T Consensus 157 ~~~A~~~gi~~~~~~~~~~~i~~~a~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~p~~pGlGi~~d~d~ 236 (242)
T d1muca1 157 AQIAEAAGIGLYGGTMLEGSIGTLASAHAFLTLRQLTWGTELFGPLLLTEEIVNEPPQYRDFQLHIPRTPGLGLTLDEQR 236 (242)
T ss_dssp HHHHHHHTCEEEECCSSCCHHHHHHHHHHHTTCSCCTTCBCCCGGGGBSSCSBSSCCEEETTEEECCCCSBTSCCBCHHH
T ss_pred HHHHHhCCCCcccccccccccchhhhhhHHhhccccccccccCchhhhhhhhccCCCeEECCEEECCCCCCCCeEECHHH
Confidence 999999999999999999999999999999999988765 4667777888999999999999999999999999999997
Q ss_pred cC
Q 015289 408 IA 409 (409)
Q Consensus 408 ~~ 409 (409)
|+
T Consensus 237 l~ 238 (242)
T d1muca1 237 LA 238 (242)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Probab=100.00 E-value=5.7e-49 Score=368.20 Aligned_cols=231 Identities=23% Similarity=0.349 Sum_probs=211.9
Q ss_pred CCeeeeeeeecCCCHHH-HHHHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHH
Q 015289 173 SNTITTDITIPIVSPAE-AAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVL 249 (409)
Q Consensus 173 ~~~i~~~~~i~~~~~~~-~~~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~ 249 (409)
+++||+|++++..++++ +.+.++.+.++||++||+|+| .++++|+++|+++|+. ++++.|++|+|++|+.++|++++
T Consensus 3 r~~vP~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~~D~~~v~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~ 82 (244)
T d2chra1 3 RSAIPIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGFRSPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYI 82 (244)
T ss_dssp CSEEEBEEEECSSCHHHHHHHHHHHHHTTSCCEEEEECSSSCHHHHHHHHHHHHHHTTTTSEEEEECTTCCCTHHHHHHH
T ss_pred CCcEEEEEEEcCCCcHHHHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEeCCCCcchHHHHHHH
Confidence 46899999988876554 555567777789999999998 6899999999999998 79999999999999999999999
Q ss_pred HHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHH
Q 015289 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEI 328 (409)
Q Consensus 250 ~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i 328 (409)
++|+++++ .|+|||++++|++++++|++ ++++||++||++++.+++.++++.+++|++|+|++++| +++++++
T Consensus 83 ~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~ipia~~E~~~~~~~~~~~i~~~~~d~v~~d~~~~GGit~~~~i 156 (244)
T d2chra1 83 PELEALGV--ELIEQPVGRENTQALRRLSD----NNRVAIMADESLSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKI 156 (244)
T ss_dssp HHHHTTTC--CEEECCSCSSCHHHHHHHHH----HCSSEEEESSSCCSHHHHHHHHTTTCCSEECCCHHHHTSHHHHHHH
T ss_pred HHHhhhhH--HHHhhhhhhccchhhhhhcc----ceeeeeeecccccccchhhhhhhcceeEEEeeccccccchHHHHHH
Confidence 99999987 49999999999999999975 67999999999999999999999999999999999997 9999999
Q ss_pred HHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCce-eccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCC
Q 015289 329 IEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDN 407 (409)
Q Consensus 329 ~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~ 407 (409)
+++|+++|+++++|++.+++++.++++|+++++++..+ .++.+++.+.++++.+++.++||++.+|++||||+++|+|+
T Consensus 157 ~~~a~~~gi~~~~~~~~~~~i~~~a~~hl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~~d~~~ 236 (244)
T d2chra1 157 AAVAEASGIASYGGTMLDSTIGTSVALQLYSTVPSLPFGCELIGPFVLADTLSHEPLEIRDYELQVPTGVGHGMTLDEDK 236 (244)
T ss_dssp HHHHHHHTCEECCCCCSCCHHHHHHHHHHHTTSSCCTTCBCCCHHHHBSCCSBSCCCCBCSSEEECCCSSSTTCCBCHHH
T ss_pred HHHHHHcCCCeeeccccccccchhHHHHHHHhCCCCcceeccCchhhhhhhcccCCceeECCEEECCCCCCCCeEECHHH
Confidence 99999999999999999999999999999999998876 45666777788888888999999999999999999999997
Q ss_pred cC
Q 015289 408 IA 409 (409)
Q Consensus 408 ~~ 409 (409)
|+
T Consensus 237 l~ 238 (244)
T d2chra1 237 VR 238 (244)
T ss_dssp HH
T ss_pred HH
Confidence 63
|
| >d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Probab=100.00 E-value=2.2e-48 Score=364.01 Aligned_cols=231 Identities=25% Similarity=0.376 Sum_probs=211.1
Q ss_pred CCeeeeeeeecCCCHHHHHH-HHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHH
Q 015289 173 SNTITTDITIPIVSPAEAAE-LASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVL 249 (409)
Q Consensus 173 ~~~i~~~~~i~~~~~~~~~~-~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~ 249 (409)
+++||+|++++..++++..+ .++.+.++||++||+|+| .++++|+++++++|+. ++++.|++|+|++||+++|++++
T Consensus 3 R~~ipv~~~~~~~~~~~~~~e~~~~~~~~G~~~~KiKvG~~~~~~Di~~v~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~ 82 (243)
T d1nu5a1 3 RTSIPIAWTLASGDTARDIDSALEMIETRRHNRFKVKLGARTPAQDLEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWI 82 (243)
T ss_dssp CSEEEBCEEECSSCHHHHHHHHHHHHHTTSCSEEEEECSSSCHHHHHHHHHHHHHHHGGGCEEEEECTTCCCHHHHHHHH
T ss_pred CCceEEEEEEcCCChHHHHHHHHHHHHhCCCCEEEEEeCCCCHHHHHHHHHHHHHHhCcccceEEECCCCccchhHHHHH
Confidence 56899999988776665544 455666789999999998 6899999999999997 79999999999999999999999
Q ss_pred HHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHH
Q 015289 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEI 328 (409)
Q Consensus 250 ~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i 328 (409)
+.|+++++. |+|||++++|++++++|++ ++++||++||++++.+++.++++.+++|++|+|++++| +++++++
T Consensus 83 ~~l~~~~~~--~iEeP~~~~~~~~~~~l~~----~~~ipIa~gE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~i 156 (243)
T d1nu5a1 83 PRLEEAGVE--LVEQPVPRANFGALRRLTE----QNGVAILADESLSSLSSAFELARDHAVDAFSLKLCNMGGIANTLKV 156 (243)
T ss_dssp HHHHHHTCC--EEECCSCTTCHHHHHHHHH----HCSSEEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHH
T ss_pred HHhcchhhh--hhhhhhhhccccccccchh----ccccccccccccccchhhhhccccccccccccccccccchHHHHHH
Confidence 999999874 9999999999999999875 68999999999999999999999999999999999997 9999999
Q ss_pred HHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCcee-ccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCC
Q 015289 329 IEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI-DLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDN 407 (409)
Q Consensus 329 ~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~-e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~ 407 (409)
+++|+++|+++++|++++++++.++++|+++++|+..+. ++..++.+.++++.++++++||++.+|++||||+++|+|+
T Consensus 157 ~~~a~~~gi~~~~~~~~~s~i~~~a~~h~~aa~p~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~p~~pGlGv~~d~d~ 236 (243)
T d1nu5a1 157 AAVAEAAGISSYGGTMLDSTVGTAAALHVYATLPSLPYGCELIGPWVLGDRLTQQDLEIKDFEVHLPLGSGLGVDLDHDK 236 (243)
T ss_dssp HHHHHHHTCEEEECCSSCCHHHHHHHHHHHTTSSCCTTCBCCCHHHHBSSCSBSSCCCEETTEEECCCSSBTSCCBCHHH
T ss_pred HHHHHHcCCCcccccccchhhhHHHHHHHHHhCCCCceeeecCchHHhhhhcccCCCeEECCEEECCCCCCcCeeECHHH
Confidence 999999999999999999999999999999999998774 5666766778888899999999999999999999999997
Q ss_pred cC
Q 015289 408 IA 409 (409)
Q Consensus 408 ~~ 409 (409)
|+
T Consensus 237 l~ 238 (243)
T d1nu5a1 237 VR 238 (243)
T ss_dssp HH
T ss_pred HH
Confidence 63
|
| >d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=1.8e-47 Score=355.70 Aligned_cols=226 Identities=38% Similarity=0.574 Sum_probs=214.9
Q ss_pred CCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCC-ChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHH
Q 015289 173 SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLE 250 (409)
Q Consensus 173 ~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~-~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~ 250 (409)
+++|++++++++.+|+++.+++++++++||++||+|+|. ++++|+++++++|+. ++++.|++|+|++|+.++|+++++
T Consensus 2 r~~v~~~~t~~~~~pe~~~~~a~~~~~~G~~~~Kikig~~~~~~d~~~i~~ir~~~g~~~~i~vD~N~~~~~~~a~~~~~ 81 (234)
T d1jpma1 2 RDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIR 81 (234)
T ss_dssp CSEEEBCEEECCSCHHHHHHHHHHHHHTTCCEEEEECSSSCHHHHHHHHHHHHHHHGGGSEEEEECTTCSCHHHHHHHHH
T ss_pred CCcceEEEEEcCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHcCchhhhhhhcccccchHHHHHHHH
Confidence 578999999999999999999999999999999999985 899999999999997 799999999999999999999999
Q ss_pred HHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHH
Q 015289 251 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEII 329 (409)
Q Consensus 251 ~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~ 329 (409)
.|+++++.+.|+|||++++|++++++|++ ++++||+.||++++..++.++++.+++|++|+|++++| ++++++++
T Consensus 82 ~le~~~~~i~~~EeP~~~~d~~~~~~l~~----~~~~pia~gE~~~~~~~~~~~i~~~~~d~v~~d~~~~GGit~~~~i~ 157 (234)
T d1jpma1 82 KMEDAGLGIELVEQPVHKDDLAGLKKVTD----ATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKIN 157 (234)
T ss_dssp HHHHTTCCEEEEECCSCTTCHHHHHHHHH----HCSSCEEESTTCSSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHH
T ss_pred HHHhccCceeeecCCccccCHHHHHHhhc----cccceeecccccccchhhhhhhccCCcCeEEEeeecCCCHHHHHHHH
Confidence 99987665679999999999999999875 68999999999999999999999999999999999997 99999999
Q ss_pred HHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceeccccccccccCCCCCCeeeeCcEEecCCCCCcccc
Q 015289 330 EVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGF 402 (409)
Q Consensus 330 ~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~ 402 (409)
++|+++|+++++|++++++++.++++|+++++++..++|+++|..+.+|++.++++++||++.+|++||||+.
T Consensus 158 ~~a~~~g~~~~~~~~~~~~i~~~a~~~~aa~~~~~~~~e~~~~~~~~~~~~~~~~~~~~G~l~~p~~pGLGi~ 230 (234)
T d1jpma1 158 AMAEACGVECMVGSMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLGII 230 (234)
T ss_dssp HHHHHTTCCEEECCSSCCHHHHHHHHHHHHHCTTEEEECCCGGGGBSSCCEEESCEEETTEEECCCSSBTCEE
T ss_pred HHHHhcCeeEeecccccCCchHHHHHHHHHhccCCceeecCCchhhhhhccCCCceEECCEEECCCCCeeeeE
Confidence 9999999999999999999999999999999999999999998888889998899999999999999999974
|
| >d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Probab=100.00 E-value=1.7e-47 Score=358.05 Aligned_cols=227 Identities=25% Similarity=0.391 Sum_probs=209.1
Q ss_pred CCeeeeeeeecCC-CHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHH
Q 015289 173 SNTITTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEK 251 (409)
Q Consensus 173 ~~~i~~~~~i~~~-~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~ 251 (409)
+++||+|+++++. +++++.+++++++++||++||+|+|+ ++|+++++++|+..|++.||+|+|++|+.++|+ ++++
T Consensus 2 r~~i~~~~s~g~~~~~e~~~~~~~~~~~~Gf~~~Kikvg~--~~D~~~v~~ir~~~~~~~l~vDaN~~~~~~~a~-~~~~ 78 (244)
T d1wufa1 2 KESIKVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIAP--NKDIQFVEAVRKSFPKLSLMADANSAYNREDFL-LLKE 78 (244)
T ss_dssp CSEEEBCEEECCCSCHHHHHHHHHHHHHHTCCEEEEECBT--TBSHHHHHHHHTTCTTSEEEEECTTCCCGGGHH-HHHT
T ss_pred CCeEEEeEEeCCCCCHHHHHHHHHHHHHCCCCEEEEEeCC--cHHHHHHHHHHHhccchhhhhhhhccccchhhh-hhhc
Confidence 5789999999984 79999999999999999999999997 579999999999988999999999999999997 6688
Q ss_pred HHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHH
Q 015289 252 LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIE 330 (409)
Q Consensus 252 L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~ 330 (409)
|+++++ .|||||++++|++++++|++ .+++||++||++++++++.++++.+++|++|+|++++| +++++++++
T Consensus 79 l~~~~~--~wiEeP~~~~d~~~~~~l~~----~~~~pia~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~ki~~ 152 (244)
T d1wufa1 79 LDQYDL--EMIEQPFGTKDFVDHAWLQK----QLKTRICLDENIRSVKDVEQAHSIGSCRAINLKLARVGGMSSALKIAE 152 (244)
T ss_dssp TGGGTC--SEEECCSCSSCSHHHHHHHT----TCSSEEEECTTCCSHHHHHHHHHHTCCSEEEECTGGGTSHHHHHHHHH
T ss_pred ccccch--hhhcCcccccchhhhhcccc----ccccccccCccccchhhhhhhccccccceeecccccccchhhHHHHHH
Confidence 999987 49999999999999999874 78999999999999999999999999999999999997 999999999
Q ss_pred HHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecccc-ccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 331 VVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDT-PLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 331 ~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~-p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
+|+++|+++++|++.+++++.++++|+++..++....++.. +..+.+|++.++++++||++.+|++||||+++|++.|
T Consensus 153 ~a~~~gi~v~~h~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~i~~p~~pGLGie~d~~~l 231 (244)
T d1wufa1 153 YCALNEILVWCGGMLEAGVGRAHNIALAARNEFVFPGDISASNRFFAEDIVTPAFELNQGRLKVPTNEGIGVTLDLKVL 231 (244)
T ss_dssp HHHHTTCEEEECCCCCCHHHHHHHHHHHTSSSCCSCBSCCCGGGTBSSCSBSSCCCCCSSEEECCCSSBTSCCBCHHHH
T ss_pred HHHHcCCEEecCCCCCccHHHHHHHHHHhccCccchhhhcccchhhhhhccCCCceEECCEEECCCCCCcCeeECHHHH
Confidence 99999999999999999999999999999888776666553 3446788888889999999999999999999999876
|
| >d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Probab=100.00 E-value=5.4e-47 Score=354.17 Aligned_cols=227 Identities=23% Similarity=0.327 Sum_probs=207.1
Q ss_pred CCeeeeeeeecC-CCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHH
Q 015289 173 SNTITTDITIPI-VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLE 250 (409)
Q Consensus 173 ~~~i~~~~~i~~-~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~ 250 (409)
+++||+|++++. .+++++.+++++++++||++||+|+|. ++|+++++++|+. ++++.||+|+|++|++++|+++.+
T Consensus 2 R~~ipvy~s~g~~~~~~~~~~~~~~~~~~Gf~~~Kikvg~--~~Di~~i~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~ 79 (242)
T d1sjda1 2 RDSVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIEP--GWDVEPVRAVRERFGDDVLLQVDANTAYTLGDAPQLAR 79 (242)
T ss_dssp CSEEEBEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECBT--TBSHHHHHHHHHHHCTTSEEEEECTTCCCGGGHHHHHT
T ss_pred CCeeEeeEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCc--hhHHHHHHHHHHHhCCCeeEeeccccccchhhhhHHhh
Confidence 568999999986 589999999999999999999999985 6899999999997 899999999999999999999875
Q ss_pred HHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHH
Q 015289 251 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEII 329 (409)
Q Consensus 251 ~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~ 329 (409)
|+++++ .|||||++++|++++++|++ ++++||++||++++.+++.++++.+++|++|+|++++| ++++++++
T Consensus 80 -l~~~~~--~~iEeP~~~~d~~~~~~l~~----~~~~pia~gE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGit~~~~i~ 152 (242)
T d1sjda1 80 -LDPFGL--LLIEQPLEEEDVLGHAELAR----RIQTPICLDESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVH 152 (242)
T ss_dssp -TGGGCC--SEEECCSCTTCHHHHHHHHT----TCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECTTTTTSHHHHHHHH
T ss_pred -hhhhhh--HHHHhhhhhhhHHHHHHHHh----ccCcccccccccccchhhhhhhhcCccCEEEeccccCccchhhhHHH
Confidence 999987 49999999999999999874 78999999999999999999999999999999999998 99999999
Q ss_pred HHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceeccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 330 EVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 330 ~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
++|+++|+++++|++++++++.++++|+++..++..+.++..+..+.++.+++++.++||++.+|++||||+++|+|.|
T Consensus 153 ~~A~~~~i~~~~h~~~~~~i~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~p~~pGLGie~d~~~l 231 (242)
T d1sjda1 153 DVCAAHGIPVWCGGMIETGLGRAANVALASLPNFTLPGDTSASDRFYKTDITEPFVLSGGHLPVPTGPGLGVAPIPELL 231 (242)
T ss_dssp HHHHHTTCCEEECCCCCCHHHHHHHHHHHTSTTBCSCBSCCCGGGTCSSCSSSCCCCSSSEEECCCSSBTSCCCCHHHH
T ss_pred HHHHHCCCEEeecccccchhHHHHHHHHhhccccccccccccchhhhHhhccCCCeEECCEEECCCCCCCcEEECHHHH
Confidence 9999999999999999999999999999866554444556666666677778888999999999999999999999876
|
| >d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.1e-47 Score=361.93 Aligned_cols=230 Identities=16% Similarity=0.214 Sum_probs=208.9
Q ss_pred CCeeeeeeeec----------CCCHHHHHHHHHHHHHcCCCeEEEecCC------------------------ChhHHHH
Q 015289 173 SNTITTDITIP----------IVSPAEAAELASKYRKQGFTTLKLKVGK------------------------NLKEDIE 218 (409)
Q Consensus 173 ~~~i~~~~~i~----------~~~~~~~~~~~~~~~~~Gf~~~KiKvG~------------------------~~~~d~~ 218 (409)
+++|++|+|.. ..+|+++++.+++++++||+++|++++. +++.|++
T Consensus 3 ~dki~~YAs~~~~~~~~~~~~~~tPe~~~~~a~~~~~~Gf~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~ 82 (278)
T d2gl5a1 3 NEKLRTYASQLQFGWGDKNHILVTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEA 82 (278)
T ss_dssp CSSEEEEEECGGGCCTTCCSCCCSHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHHHH
T ss_pred CCceeccccCCcCCCCcccccCCCHHHHHHHHHHHHHcCCCEEEEccccCCccccccccccccccccccccHHHHHHHHH
Confidence 57899998842 3589999999999999999999998652 3578999
Q ss_pred HHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCC
Q 015289 219 VLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRS 297 (409)
Q Consensus 219 ~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~ 297 (409)
+|++||+. |+++.||+|+|++|+.++|+++++.|+++++ .|+|||++++|++++++|++ ++++||++||++++
T Consensus 83 ~v~aiRe~vG~~~~l~vDan~~~~~~~Ai~~~~~L~~~~l--~wiEePi~~~d~~~~~~L~~----~~~ipIa~gE~~~~ 156 (278)
T d2gl5a1 83 RIAAMREAMGDDADIIVEIHSLLGTNSAIQFAKAIEKYRI--FLYEEPIHPLNSDNMQKVSR----STTIPIATGERSYT 156 (278)
T ss_dssp HHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCE--EEEECSSCSSCHHHHHHHHH----HCSSCEEECTTCCT
T ss_pred HHHHHHHHhccccceeecccccccchhhHHHHHHhccccc--ceecccccccchhhhhhhcc----ccccceecccccCC
Confidence 99999997 8999999999999999999999999999986 59999999999999999975 68899999999999
Q ss_pred HHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceeccccc--cc
Q 015289 298 LDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTP--LL 374 (409)
Q Consensus 298 ~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~p--~~ 374 (409)
.++++++++.+++|++|+|++++| ++++++++++|+++|+++++|+. +++++.++++|++++++|+.+.|++.. ..
T Consensus 157 ~~~~~~~i~~~a~di~~~d~~~~GGit~~~kia~la~~~gi~v~~H~~-~~~i~~~a~~hl~aa~~n~~~~e~~~~~~~~ 235 (278)
T d2gl5a1 157 RWGYRELLEKQSIAVAQPDLCLCGGITEGKKICDYANIYDTTVQVHVC-GGPVSTVAALHMETAIPNFIIHEHHTNAMKA 235 (278)
T ss_dssp THHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHTTTCEECCCCC-SSHHHHHHHHHHHHHCTTBCCEEEETTTTCH
T ss_pred hHHHhhhhccccceeEeeccccccchhhHHHhhhhhhhhccccccccc-cCchhhhhhhhhhhccCceeeeeccccchhh
Confidence 999999999999999999999997 99999999999999999999975 799999999999999999988886532 22
Q ss_pred cccCCCCCCeeeeCcEEecCCCCCcccccCCCCcC
Q 015289 375 LSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409 (409)
Q Consensus 375 ~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~~ 409 (409)
+.+++++++++++||++.+|++||||+++|++.|+
T Consensus 236 ~~~~l~~~~~~~~~G~~~~p~~PGLGie~de~~l~ 270 (278)
T d2gl5a1 236 SIRELCTHDYQPENGYYVAPEQPGLGQELNDEVVK 270 (278)
T ss_dssp HHHTTBSSCCCCBTTEECCCCSSBTSCCBCHHHHT
T ss_pred hHHhhccCCCeeeCCEEECCCCCCCceeeCHHHHh
Confidence 34678888999999999999999999999998764
|
| >d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Probab=100.00 E-value=7e-47 Score=353.69 Aligned_cols=228 Identities=24% Similarity=0.343 Sum_probs=208.6
Q ss_pred CCeeeeeeeecCC-CHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHH
Q 015289 173 SNTITTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEK 251 (409)
Q Consensus 173 ~~~i~~~~~i~~~-~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~ 251 (409)
+++|++|.+++.. +++++.+++++++++||++||+|+|+ +.|+++++++|+..+++.|++|+|++||.++|+++ +.
T Consensus 2 r~~v~~y~s~g~~~~~e~~~~~~~~~~~~G~~~~KiKvg~--~~D~~~v~~ir~~~~d~~l~vD~n~~~~~~~a~~~-~~ 78 (243)
T d1r0ma1 2 KEQVEVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIKP--GWDVQPVRATREAFPDIRLTVDANSAYTLADAGRL-RQ 78 (243)
T ss_dssp CSEEEBCEEECCCSSHHHHHHHHHHHHHTTCSCEEEECBT--TBSHHHHHHHHHHCTTSCEEEECTTCCCGGGHHHH-HT
T ss_pred CCEEEeeeEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcCc--chhHHHHHHHHHhccCceEEEeccccCchHHHHHh-hh
Confidence 5789999999864 78888999999999999999999996 56999999999997899999999999999999875 88
Q ss_pred HHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHH
Q 015289 252 LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIE 330 (409)
Q Consensus 252 L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~ 330 (409)
|+++++ .|||||++++|+++++++++ ++++||++||++++..++.++++.+++|++|+|++++| +++++++++
T Consensus 79 l~~~~~--~~iEeP~~~~d~~~~~~l~~----~~~ipia~gE~~~~~~~~~~~i~~~~~d~v~~d~~~~GGit~~~~i~~ 152 (243)
T d1r0ma1 79 LDEYDL--TYIEQPLAWDDLVDHAELAR----RIRTPLCLDESVASASDARKALALGAGGVINLKVARVGGHAESRRVHD 152 (243)
T ss_dssp TGGGCC--SCEECCSCTTCSHHHHHHHH----HCSSCEEESTTCCSHHHHHHHHHHTSCSEEEECTTTTTSHHHHHHHHH
T ss_pred hhhccc--hhhhhhccccchHHHHHHhh----cCCcccccccchhhhhhhhhhhhcccccceecccceeccHHHHHHHHH
Confidence 999987 49999999999999999875 68999999999999999999999999999999999998 999999999
Q ss_pred HHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecccc-ccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCcC
Q 015289 331 VVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDT-PLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409 (409)
Q Consensus 331 ~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~-p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~~ 409 (409)
+|+++|+++++|++++++++.++++|++++.++..+.++.. +..+.+|++.++++++||++.+|++||||+++|+|.|+
T Consensus 153 ~A~~~gi~v~~h~~~~~~i~~~a~~h~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~~p~~pGlGie~d~~~l~ 232 (243)
T d1r0ma1 153 VAQSFGAPVWCGGMLESGIGRAHNIHLSTLSNFRLPGDTSSASRYWERDLIQEPLEAVDGLMPVPQGPGTGVTLDREFLA 232 (243)
T ss_dssp HHHHTTCCEEECCCCCCHHHHHHHHHHTTSTTBCSCBSCCCGGGTBSSCSBSSCCCCBTTEEECCCSSBTSCCBCHHHHH
T ss_pred HHHHCCCceecccccccchhhhHHHHHHhhccccccccccccchhhhhhhcCCCCeeECCEEECCCCCCCcEeECHHHHH
Confidence 99999999999999999999999999999888776666543 44567788888999999999999999999999998763
|
| >d1wuea1 c.1.11.2 (A:1127-1367) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Probab=100.00 E-value=2.2e-46 Score=349.69 Aligned_cols=228 Identities=21% Similarity=0.325 Sum_probs=206.7
Q ss_pred CCeeeeeeeecCC-CHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHH
Q 015289 173 SNTITTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEK 251 (409)
Q Consensus 173 ~~~i~~~~~i~~~-~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~ 251 (409)
+++||+|++++.. +++++.+++++++++||++||+|+|+ +.|+++++++|+..+|+.|++|+|++|+.++|+++ .+
T Consensus 2 r~~ipv~~s~g~~~~~~~~~~~~~~~~~~G~~~~Kikvg~--~~D~~~v~~ir~~~~d~~l~vDaN~~~~~~~a~~~-~~ 78 (241)
T d1wuea1 2 RRKIPVGISLGIQEDLPQLLKQVQLAVEKGYQRVKLKIRP--GYDVEPVALIRQHFPNLPLMVDANSAYTLADLPQL-QR 78 (241)
T ss_dssp CSEEECCEEECCCSCHHHHHHHHHHHHHTTCSCEEEECBT--TBSHHHHHHHHHHCTTSCEEEECTTCCCGGGHHHH-HG
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEEEcCc--cHHHHHHHHHHHhccccceeecccccCCHHHhhhh-hh
Confidence 5789999998875 78899999999999999999999986 57999999999998899999999999999999876 56
Q ss_pred HHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHH
Q 015289 252 LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIE 330 (409)
Q Consensus 252 L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~ 330 (409)
+.++++ .|||||++++|++++++|++ ++++|||+||++++.+++.++++.+++|++|+|++++| +++++++++
T Consensus 79 ~~~~~i--~~iEeP~~~~~~~~~~~l~~----~~~~pIa~gE~~~~~~~~~~~i~~~~~d~i~~d~~~~GGit~~~~i~~ 152 (241)
T d1wuea1 79 LDHYQL--AMIEQPFAADDFLDHAQLQR----ELKTRICLDENIRSLKDCQVALALGSCRSINLKIPRVGGIHEALKIAA 152 (241)
T ss_dssp GGGSCC--SCEECCSCTTCSHHHHHHHT----TCSSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHH
T ss_pred hhhhhh--hhhcCcccccchhhhhhhhc----ccccccccCcccccchhhhhhhhhhhhhhhccccccccCcHHHHHHHH
Confidence 888887 59999999999999999874 78999999999999999999999999999999999997 999999999
Q ss_pred HHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceeccccc-cccccCCCCCCeeeeCcEEecCCCCCcccccCCCCcC
Q 015289 331 VVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTP-LLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409 (409)
Q Consensus 331 ~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~p-~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~~ 409 (409)
+|+++|+++++|++.+++++.++++|+++..++....++... ..+.+|+++++++++||++.+|++||||+++|+|.|+
T Consensus 153 ~a~~~~i~v~~~~~~~~~i~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~p~~pGlGi~~d~~~l~ 232 (241)
T d1wuea1 153 FCQENDLLVWLGGMFESGVGRALNLQFASQPTFSFPGDISATERYFYEDIITEPFILEQGTMTVPQGLGIGVTLSQTNLL 232 (241)
T ss_dssp HHHHTTCEEEECCCCCCHHHHHHHHHHHTSTTCCSCCSCCCGGGTBSCCSBSSCCCEETTEEECCCSSBTCCCBCHHHHH
T ss_pred HHHHcCCEEEecccccccccccchhhhccccccccccccccccchhhhhccCCCCeEECCEEECCCCCCCceEECHHHHH
Confidence 999999999999999999999999999987766555566543 3356788888999999999999999999999998763
|
| >d2gdqa1 c.1.11.2 (A:119-374) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=3.3e-46 Score=351.76 Aligned_cols=229 Identities=18% Similarity=0.238 Sum_probs=201.8
Q ss_pred CCeeeeeeeecCC--C---HHHHHHHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHH
Q 015289 173 SNTITTDITIPIV--S---PAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEA 245 (409)
Q Consensus 173 ~~~i~~~~~i~~~--~---~~~~~~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A 245 (409)
+++||+|.+++.. + .+++.+++++++++||+++|+|+| .++++|+++|+++|++ |+++.|++|+|++|++++|
T Consensus 3 Rd~ip~Yas~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~Kikvg~~~~~~di~~v~avr~~~G~~~~l~vDan~~~~~~~A 82 (256)
T d2gdqa1 3 REEIPVYASFQSYSDSPQWISRSVSNVEAQLKKGFEQIKVKIGGTSFKEDVRHINALQHTAGSSITMILDANQSYDAAAA 82 (256)
T ss_dssp CSEEEEEEECCCBCSSTTHHHHHHHHHHHHHTTTCCEEEEECSSSCHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHH
T ss_pred CCeEEeCeecCcCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHcCCCeEEeeccccCCCHHHH
Confidence 5789999997643 2 356777888889999999999998 5899999999999997 8999999999999999999
Q ss_pred HHHHHHHHhC-CCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HH
Q 015289 246 VEVLEKLYEM-GVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VL 323 (409)
Q Consensus 246 ~~~~~~L~~~-~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~ 323 (409)
+++++.|+++ ++ .|+|||++++|++++++|++ ++++||++||++++..++.++++.+++|++|+|++++| ++
T Consensus 83 ~~~~~~l~~~~~i--~~~EeP~~~~d~~~~~~l~~----~~~ipIa~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit 156 (256)
T d2gdqa1 83 FKWERYFSEWTNI--GWLEEPLPFDQPQDYAMLRS----RLSVPVAGGENMKGPAQYVPLLSQRCLDIIQPDVMHVNGID 156 (256)
T ss_dssp HTTHHHHTTCSCE--EEEECCSCSSCHHHHHHHHT----TCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCTTTTTHHH
T ss_pred HHHHHHHhhcCce--eEeccccccchHHHHHHHhh----cccceeecCccccchhhHHHHHHhhcceeeeccccccccHH
Confidence 9999999996 44 59999999999999999874 78999999999999999999999999999999999997 99
Q ss_pred HHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceeccccccccccCCC----C--CCeeeeCcEEecCCCC
Q 015289 324 GALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPV----L--DGYEVSGAVYKFTNAR 397 (409)
Q Consensus 324 ~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~p~~~~~d~~----~--~~~~~~~G~i~~p~~P 397 (409)
++++++++|+++|+++++|+. +++++.++++|++++++|+.+.+...+..+..+.+ . .+++++||++++|++|
T Consensus 157 ~~~~i~~~a~~~~i~v~~h~~-~~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~p 235 (256)
T d2gdqa1 157 EFRDCLQLARYFGVRASAHAY-DGSLSRLYALFAQACLPPWSKMKNDHIEPIEWDVMENPFTDLVSLQPSKGMVHIPKGK 235 (256)
T ss_dssp HHHHHHHHHHHHTCEECCCCS-SCSHHHHHHHHHHHTSCCSSSCTTSCSCCEEEECSSCGGGGGBCCCCBTTEEECCCSS
T ss_pred HHHHHHHHHhhhccccccccc-ccccchHHHHHHHHhCccchhhccccccceeeccccccccccCCceeeCCEEECCCCC
Confidence 999999999999999999975 78999999999999999987777654322222222 2 2367899999999999
Q ss_pred CcccccCCCCc
Q 015289 398 GHGGFLHWDNI 408 (409)
Q Consensus 398 GlG~~~d~d~~ 408 (409)
|||+++|+|.|
T Consensus 236 GLGieid~~~l 246 (256)
T d2gdqa1 236 GIGTEINMEIV 246 (256)
T ss_dssp BTSSCBCHHHH
T ss_pred CCCeEeCHHHH
Confidence 99999999876
|
| >d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=5.6e-45 Score=337.37 Aligned_cols=219 Identities=20% Similarity=0.259 Sum_probs=201.3
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 015289 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLY 253 (409)
Q Consensus 176 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~L~ 253 (409)
|+.|.+.++.+++.+.+++++++++||++||+|+| .++++|+++++++|+. ++++.|++|+|++|++++|+++++.|+
T Consensus 2 ~~ay~~~~~d~~~~~~e~~~~~~~~G~~~~KikvG~~~~~~di~~i~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~ 81 (227)
T d2mnra1 2 VQAYDSHSLDGVKLATERAVTAAELGFRAVKTKIGYPALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQ 81 (227)
T ss_dssp EEEEEECCSCHHHHHHHHHHHHHHTTCSEEEEECCCSSHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHH
T ss_pred ceeeccCCCCcHHHHHHHHHHHHHCCCCEEEEccCCCCHHHHHHHHHHHHHHhCCCcEEEEeccccCChHHHHHHHHHhh
Confidence 56788888888999999999999999999999998 5789999999999997 899999999999999999999999999
Q ss_pred hCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHH
Q 015289 254 EMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVV 332 (409)
Q Consensus 254 ~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A 332 (409)
++++ .|||||++++|++++++|++ ++++||++||++++..++.++++.+++|++|+|++++| ++++++++++|
T Consensus 82 ~~~~--~~iEeP~~~~~~~~~~~l~~----~~~ipia~gE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGit~~~~i~~~a 155 (227)
T d2mnra1 82 QEGV--TWIEEPTLQHDYEGHQRIQS----KLNVPVQMGENWLGPEEMFKALSIGACRLAMPDAMKIGGVTGWIRASALA 155 (227)
T ss_dssp HHTC--SEEECCSCTTCHHHHHHHHH----TCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTTTTHHHHHHHHHHHH
T ss_pred hchh--hhhcCcccccchhhhHHHHH----HcCCccccCceeEeechhhhhHhcCceeeeecccccccchhhHHHHHHHH
Confidence 9987 49999999999999999874 78999999999999999999999999999999999997 99999999999
Q ss_pred HHcCCcEEEccCCchHHHHHHHHHHHccCCCCceeccccccccccCCCCCCeeeeCcEEecCCCCCcccccCCCCcC
Q 015289 333 RASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409 (409)
Q Consensus 333 ~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~~ 409 (409)
+++|+++++|++. .+++|+++++++..++|.. .+.++++.++++++||++.+|++||||+++|+|+|+
T Consensus 156 ~~~g~~~~~h~~~------~~~~hl~aa~~~~~~~e~~---~~~~~~~~~~~~i~~G~~~~p~~pGlGie~d~~~l~ 223 (227)
T d2mnra1 156 QQFGIPMSSHLFQ------EISAHLLAATPTAHWLERL---DLAGSVIEPTLTFEGGNAVIPDLPGVGIIWREKEIG 223 (227)
T ss_dssp HHHTCCBCCBSCH------HHHHHHHHTCTTBCCEEEC---CSSGGGBCCCSEEETTEEECCSSSBTCCCBCHHHHH
T ss_pred HHcCCcccccchh------hhhhhhhhcCCccceeecc---cCchhhcCCCceeECCEEECCCCCCCCEEECHHHHh
Confidence 9999999998763 4678999999998888753 245677888899999999999999999999998763
|
| >d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=100.00 E-value=3.4e-44 Score=337.63 Aligned_cols=224 Identities=19% Similarity=0.318 Sum_probs=194.2
Q ss_pred CCeeeeeeeec--------CCCHHHHHHHHHHHHHcCCCeEEEecCC-------ChhHHHHHHHHHHhh-CCCcEEEEeC
Q 015289 173 SNTITTDITIP--------IVSPAEAAELASKYRKQGFTTLKLKVGK-------NLKEDIEVLRAIRAV-HPDSSFILDA 236 (409)
Q Consensus 173 ~~~i~~~~~i~--------~~~~~~~~~~~~~~~~~Gf~~~KiKvG~-------~~~~d~~~l~avr~~-~~~~~l~vDa 236 (409)
+++||+|++.. +.+|+++++.+++++++||++||+|+|. ++++|+++|++||+. |+++.|++|+
T Consensus 2 Rd~i~~Yas~~~~~~~~~~~~tpe~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~~d~~~v~avR~~~G~~~~l~vDa 81 (255)
T d1rvka1 2 RDKVLAYGSIMCGDELEGGLATPEDYGRFAETLVKRGYKGIKLHTWMPPVSWAPDVKMDLKACAAVREAVGPDIRLMIDA 81 (255)
T ss_dssp CSEEEEEEEECCCCCCTTTTSSHHHHHHHHHHHHHHTCSEEEEECCCTTSTTCCCHHHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred CCeeEeceeecCCCccccCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCccccccCHHHHHHHHHHHHHHcCCccceeccc
Confidence 57899998863 3479999999999999999999999983 679999999999997 8999999999
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHH-HHHHHHHcCCCCEEEe
Q 015289 237 NEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLD-DVKKIVKGNLADVINI 315 (409)
Q Consensus 237 N~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~-~~~~~i~~~a~div~~ 315 (409)
|++||+++|+++++.|+++++ .|||||++++|++++++|++ .+++||++||++.+.. ++.++++.+++|++|+
T Consensus 82 N~~~~~~~A~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~l~~----~~~~pI~~~E~~~~~~~~~~~~i~~~~~dii~~ 155 (255)
T d1rvka1 82 FHWYSRTDALALGRGLEKLGF--DWIEEPMDEQSLSSYKWLSD----NLDIPVVGPESAAGKHWHRAEWIKAGACDILRT 155 (255)
T ss_dssp CTTCCHHHHHHHHHHHHTTTC--SEEECCSCTTCHHHHHHHHH----HCSSCEEECSSCSSHHHHHHHHHHTTCCSEEEE
T ss_pred ccccccchhhhhhhhcccchh--hhhcCCcccccHHHHHHHHH----hcccceeehhhcccchhhhhhhhhhchhhhccc
Confidence 999999999999999999987 49999999999999999975 6889999999999976 5688999999999999
Q ss_pred CCCCCc-HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceeccc--ccccccc---C--CCCCCeeee
Q 015289 316 KLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLD--TPLLLSE---D--PVLDGYEVS 387 (409)
Q Consensus 316 k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~--~p~~~~~---d--~~~~~~~~~ 387 (409)
|++++| ++++++++++|+++|+++++|++. ++++|++++++++.+.+.. .+..... + .....+.++
T Consensus 156 d~~~~GGit~~~~i~~~a~~~gi~v~~h~~~------~~~~hl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 229 (255)
T d1rvka1 156 GVNDVGGITPALKTMHLAEAFGMECEVHGNT------AMNLHVVAATKNCRWYERGLLHPFLEYDDGHDYLKSLSDPMDR 229 (255)
T ss_dssp CHHHHTSHHHHHHHHHHHHHTTCCEEECCCS------HHHHHHHHHCSSCCCEEEEEECTTSCGGGCCTTBSSCSSCBCT
T ss_pred cccccccchHHHHHHHHHHHhccceeccccc------hhHHHHHHHhhhhhhcccccccccccccchhhhhhccCCCeee
Confidence 999998 999999999999999999999974 3668999999887765532 1211111 1 122345689
Q ss_pred CcEEecCCCCCcccccCCCCc
Q 015289 388 GAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 388 ~G~i~~p~~PGlG~~~d~d~~ 408 (409)
||++.+|++||||+++|+|+|
T Consensus 230 ~G~i~vp~~PGLGieid~~~l 250 (255)
T d1rvka1 230 DGFVHVPDRPGLGEDIDFTFI 250 (255)
T ss_dssp TSEEECCSCSBTCCCBCHHHH
T ss_pred CCEEECCCCCCCCeeECHHHH
Confidence 999999999999999999876
|
| >d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Probab=100.00 E-value=2.1e-44 Score=338.61 Aligned_cols=228 Identities=23% Similarity=0.273 Sum_probs=193.9
Q ss_pred eeeeeeec---CCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHH
Q 015289 176 ITTDITIP---IVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEK 251 (409)
Q Consensus 176 i~~~~~i~---~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~~~~~~ 251 (409)
+|+|.+.+ ..+++++.+++++++++||++||+|+|.+++.|++++++||+. ++++.|++|+|++|+.++|+++++.
T Consensus 2 ~P~Ya~~~g~~~~s~ee~~~~a~~~~~~Gf~~~KikvG~~~~~di~~v~~vr~~~g~~~~l~vDaN~~~~~~~A~~~~~~ 81 (252)
T d1yeya1 2 YPAYTTSPGWLGYSDEKLVRLAKEAVADGFRTIKLKVGANVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMRQ 81 (252)
T ss_dssp EEEEECTTCC----CHHHHHHHHHHHHTTCSEEEEECCSCHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHT
T ss_pred cCceeccCCcCCCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHHhCCCceEeeccccCcchHHHHHHHHh
Confidence 57787643 2478999999999999999999999999999999999999997 8999999999999999999999999
Q ss_pred HHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHH
Q 015289 252 LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIE 330 (409)
Q Consensus 252 L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~ 330 (409)
|+++++. |||||++++|+++++++.+ +.+++||++||++++..+++++++.+++|++|+|++++| +++++++++
T Consensus 82 l~~~~~~--~iEeP~~~~d~~~~~~~~~---~~~~ipia~gE~~~~~~~~~~~i~~~a~d~~~~d~~~~GGit~~~kia~ 156 (252)
T d1yeya1 82 LAEFDIA--WIEEPTSPDDVLGHAAIRQ---GITPVPVSTGEHTQNRVVFKQLLQAGAVDLIQIDAARVGGVNENLAILL 156 (252)
T ss_dssp TGGGCCS--CEECCSCTTCHHHHHHHHH---HSTTSCEECCTTCCSHHHHHHHHHHTCCSEECCCTTTSSHHHHHHHHHH
T ss_pred hhhcCce--eecCCcchhhHHHHHHHhh---ccCCCceeccccccchhhhhhHhhccccceeccccccccCchhhhHHHH
Confidence 9999874 9999999999999988764 246899999999999999999999999999999999998 999999999
Q ss_pred HHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCc-eeccccc-cccccCCCCCCeeeeCcEEecCCCCCcccccCCCCc
Q 015289 331 VVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFK-FIDLDTP-LLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 408 (409)
Q Consensus 331 ~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~-~~e~~~p-~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~ 408 (409)
+|+++|+++++|+..++.++.++++|.++...+.. +.+...+ .....+.+.++++++||++.+|++||||+++|+|.|
T Consensus 157 ~A~~~~i~v~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~v~vp~~pGLGield~d~l 236 (252)
T d1yeya1 157 LAAKFGVRVFPHAGGVGLCELVQHLAMADFVAITGKMEDRAIEFVDHLHQHFLDPVRIQHGRYLAPEVPGFSAEMHPASI 236 (252)
T ss_dssp HHHHHTCEECCCCCTTTHHHHHHHHHHHHHHHTTCCCTTCCEEECCSSGGGBSSCCCBSSSEECCCCSSBCSCCBCHHHH
T ss_pred HHHHcCCEEecCCCCcHHHHHHHHHHHHhhhccccccccccccchhhhHHhcCCCCeEECCEEECCCCCCCCeeECHHHH
Confidence 99999999999998766666666666655543321 2221111 112345667788999999999999999999999976
|
| >d1jdfa1 c.1.11.2 (A:138-446) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-43 Score=340.95 Aligned_cols=217 Identities=16% Similarity=0.195 Sum_probs=190.7
Q ss_pred CCHHHHHHHHHHHHHc-CCCeEEEecC-CChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCcee
Q 015289 185 VSPAEAAELASKYRKQ-GFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 262 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~-Gf~~~KiKvG-~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i 262 (409)
.+|+++++++++++++ ||+++|||+| .+++.|+++++++|++.|+..||||+|++||+++|+++++.|+ +++ .||
T Consensus 46 ~~p~~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v~avr~~~pd~~l~vDaN~~~s~~~Ai~~~~~le-~~l--~w~ 122 (309)
T d1jdfa1 46 MTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLK-GSL--AYA 122 (309)
T ss_dssp CSHHHHHHHHHHHHHHHCCSCEEEECSSSCHHHHHHHHHHHHHHCTTSCEEEECTTBBCHHHHHHHHHHTT-TTC--SCE
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHHHHHHCCCCeEEeeccCCCCHHHHHHHHHHHh-hcc--hhh
Confidence 3788999999988887 9999999999 5789999999999999888999999999999999999999996 565 599
Q ss_pred ecCCCCCCH----HHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCC
Q 015289 263 EQPVHRDDW----EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGL 337 (409)
Q Consensus 263 EeP~~~~d~----~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi 337 (409)
|||++++|. +.+++|+ +++++||++||++++..++.++++.+++|++|+|+ ++| ++++++++++|+++|+
T Consensus 123 EEPv~~~d~~~~~~~l~~lr----~~~~ipIa~gE~~~~~~~~~~~i~~~a~di~~~d~-~~GGit~~~kia~lA~~~gi 197 (309)
T d1jdfa1 123 EDPCGAEQGFSGREVMAEFR----RATGLPTATNMIATDWRQMGHTLSLQSVDIPLADP-HFWTMQGSVRVAQMCHEFGL 197 (309)
T ss_dssp ESCBCCBTTBCHHHHHHHHH----HHHCCCEEESSSSSSHHHHHHHHHHTCCSEEBCCH-HHHCHHHHHHHHHHHHHHTC
T ss_pred hhhcccCcchhhHHHHHHhh----cccccceecCcccchhhhhhhhhhhccceeeeccc-ccccchHHHHHHHHHHhcCC
Confidence 999998874 4455554 47899999999999999999999999999999997 666 9999999999999999
Q ss_pred cEEEccCCchHHHHHHHHHHHccCCCCceec-cccc-cccccCCCCCCeeeeCcEEecCCCCCcccccCCCCcC
Q 015289 338 NLMIGGMVETRLAMGFAGHLSAGLGCFKFID-LDTP-LLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 409 (409)
Q Consensus 338 ~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e-~~~p-~~~~~d~~~~~~~~~~G~i~~p~~PGlG~~~d~d~~~ 409 (409)
++++|++.++++++++++|+++++||..+.+ ...+ ....++++.++++++||++.+||+||||+++|+|+|+
T Consensus 198 ~v~~H~~~~~~i~~aa~~hlaaa~p~~~~~~~~~~~~~~~~~~l~~~~~~i~dG~i~vPd~PGLGvelD~d~L~ 271 (309)
T d1jdfa1 198 TWGSHSDNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVEIDMDQVM 271 (309)
T ss_dssp CCBCCCCSCCHHHHHHHHHHHTTCCSCCCCBCCCHHHHTTTCCSBSSCCCCBTTEEECCCSSBTCCCBCHHHHH
T ss_pred CccccCCCCcHHHHHHHHHHHHhCCCCccccccccccchhhHhhcCCCceEECCEEECCCCCCCCeEECHHHHH
Confidence 9999999899999999999999999865432 2222 2245677788899999999999999999999999763
|
| >d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=100.00 E-value=7.3e-43 Score=327.09 Aligned_cols=227 Identities=15% Similarity=0.132 Sum_probs=192.6
Q ss_pred CCeeeeeeeecCC----CHHHHHHHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHH
Q 015289 173 SNTITTDITIPIV----SPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAV 246 (409)
Q Consensus 173 ~~~i~~~~~i~~~----~~~~~~~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~-~~~~~l~vDaN~~w~~~~A~ 246 (409)
+++|++|++.+.+ +++++.+++++++++||++||+|+| .++++|+++|+++|+. ++++.||+|+|++|++++|+
T Consensus 3 ~~kv~vYas~g~~~~~~~~~~~~~~~~~~~~~Gf~~~Kikvg~~~~~~di~~v~~vr~~~g~~~~l~vDan~~~~~~~Ai 82 (247)
T d1tzza1 3 NPRVFVYAAGGYYYPGKGLSMLRGEMRGYLDRGYNVVKMKIGGAPIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGI 82 (247)
T ss_dssp CCEEEEEEECCCC----CHHHHHHHHHHHHTTTCSEEEEECSSSCHHHHHHHHHHHHHHHTTTCEEEEECTTCCCHHHHH
T ss_pred CCceEEEEeCCcCCCCcCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHhccCCceEEecccccccchhHH
Confidence 5789999987753 7888999999999999999999999 5899999999999997 89999999999999999999
Q ss_pred HHHHHHHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCC----CCEEEeCCCCCc-
Q 015289 247 EVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL----ADVINIKLAKVG- 321 (409)
Q Consensus 247 ~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a----~div~~k~~~~G- 321 (409)
++++.|+++++ .|||||++++|++++++|+ +++++||++||++++..+++++++.++ +|++|+|++++|
T Consensus 83 ~~~~~l~~~~i--~wiEeP~~~~d~~~~~~l~----~~~~ipia~gE~~~~~~~~~~~i~~~a~~~~~Di~~~d~~~~GG 156 (247)
T d1tzza1 83 AYAKMLRDYPL--FWYEEVGDPLDYALQAALA----EFYPGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFDCALSYG 156 (247)
T ss_dssp HHHHHHTTSCC--SEEECCSCTTCHHHHHHHT----TTCCSCEEECTTCCSHHHHHHHHHHSCCCTTTCEECCCTTTTTC
T ss_pred HHHhhcchhhh--hhhccccccccchhhhhhh----hccccccccchhhhhhHHHHHHHHccCCcCcceeEeeccccccc
Confidence 99999999987 5999999999999999986 478999999999999999999999876 599999999997
Q ss_pred HHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceeccccccccccCCCCCCeeeeCcEEecCCCCCccc
Q 015289 322 VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGG 401 (409)
Q Consensus 322 i~~~~~i~~~A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~p~~PGlG~ 401 (409)
++++++++++|+++|+++.+|+..+ +...+++.+.++++.+. .++.. +....+.+.++++++||++.+|++||||+
T Consensus 157 it~~~~i~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~i~~G~i~~p~~pGlGi 232 (247)
T d1tzza1 157 LCEYQRTLEVLKTHGWSPSRCIPHG-GHQMSLNIAAGLGLGGN--ESYPD-LFQPYGGFPDGVRVENGHITMPDLPGIGF 232 (247)
T ss_dssp HHHHHHHHHHHHHTTCCGGGBCCSC-CBHHHHHHHHHHTCSCE--EECTT-CSTTTBSCSTTCCCBTTEEECCCCSBTSG
T ss_pred hhHHHHHHHHHHHcCCCeeccCCCc-HHHHHHHHHHHhcCCCc--eeecc-hhhhhhcCCCCcEEECCEEECCCCCCcce
Confidence 9999999999999999988776543 33344444444444332 22211 12223567788899999999999999999
Q ss_pred ccCCCCcC
Q 015289 402 FLHWDNIA 409 (409)
Q Consensus 402 ~~d~d~~~ 409 (409)
++|+|.++
T Consensus 233 e~d~d~l~ 240 (247)
T d1tzza1 233 EGKSDLYK 240 (247)
T ss_dssp GGCHHHHH
T ss_pred eECHHHHH
Confidence 99998763
|
| >d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-40 Score=303.09 Aligned_cols=205 Identities=31% Similarity=0.437 Sum_probs=187.9
Q ss_pred CCeeeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHH
Q 015289 173 SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKL 252 (409)
Q Consensus 173 ~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L 252 (409)
.++|+++.++++.+|+++.+++++++++||++||+|+|. +.|+++++++|+..|++.|++|+|++|++++|+++++.|
T Consensus 3 p~~~~~~~tv~~~tpe~~~~~a~~~~~~G~~~~KiKvg~--~~d~~~i~~ir~~~~d~~l~vDaN~~~s~~~A~~~~~~l 80 (208)
T d1jpdx1 3 PETVITAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDN--HLISERMVAIRTAVPDATLIVDANESWRAEGLAARCQLL 80 (208)
T ss_dssp CSEEEBCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCS--SCHHHHHHHHHHHCTTSEEEEECTTCCCSTTHHHHHHHH
T ss_pred CCceeeeeEcCCCCHHHHHHHHHHHHHCCCCEEEEECCC--CcHHHHHHHHHHhccccEEEEecccccchhHHHHHHHHH
Confidence 357899999999999999999999999999999999997 469999999999988999999999999999999999999
Q ss_pred HhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHH
Q 015289 253 YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEV 331 (409)
Q Consensus 253 ~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~ 331 (409)
+++++ .|||||++++|.+++++++ ..+||+.||++.+..+++++ .+++|++|+|++++| ++++++++++
T Consensus 81 ~~~~l--~~iEeP~~~~d~~~~~~l~------~~~pi~~~E~~~~~~~~~~l--~~~~d~~~~d~~~~GGi~~~~~~a~~ 150 (208)
T d1jpdx1 81 ADLGV--AMLEQPLPAQDDAALENFI------HPLPICADESCHTRSNLKAL--KGRYEMVNIKLDKTGGLTEALALATE 150 (208)
T ss_dssp HHTTC--CEEECCSCTTSCGGGGSSC------CSSCEEESTTCSSGGGHHHH--BTTBSEEEECHHHHTSHHHHHHHHHH
T ss_pred Hhccc--cccCccCCccCHHHHHhhh------cccceecCCCcCCHHHHHHH--hhccCEEEeCCcccCCHHHHHHHHHH
Confidence 99987 4999999999999888763 46899999999999999887 478999999999997 9999999999
Q ss_pred HHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceeccccccccccCCCCCCeeeeCcEEec
Q 015289 332 VRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKF 393 (409)
Q Consensus 332 A~~~gi~~~~~~~~es~i~~~~~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~i~~ 393 (409)
|+++|+++++||++++++++++++|+++ +++|.|+++++++.+|+ .++++++||++++
T Consensus 151 a~~~g~~~~~~~~~~~~i~~~a~~~~a~---~~~~~dld~~~~~~~di-~~~l~i~dG~i~l 208 (208)
T d1jpdx1 151 ARAQGFSLMLGCMLCTSRAISAALPLVP---QVSFADLDGPTWLAVDV-EPALQFTTGELHL 208 (208)
T ss_dssp HHHTTCEEEECCCSCCHHHHHHHGGGGG---GCSEECCCGGGGBSSCC-SSCCEEETTEEEC
T ss_pred HHHcCCeeeecCCchhHHHHHHHHHHhc---cCCCccccchhhhhhcC-CCCCeEeCCEEeC
Confidence 9999999999999999999999999875 56788999998777775 6789999999975
|
| >d1r6wa1 c.1.11.2 (A:100-320) O-succinylbenzoate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: O-succinylbenzoate synthase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.3e-35 Score=270.15 Aligned_cols=187 Identities=22% Similarity=0.235 Sum_probs=163.4
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEecC-CChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCC-CCcee
Q 015289 185 VSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGV-TPVLF 262 (409)
Q Consensus 185 ~~~~~~~~~~~~~~~~Gf~~~KiKvG-~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l-~~~~i 262 (409)
.+|+++.++++++ +||+++|+||| .++++|++++++||+..|++.||+|+|++|++++|+++++.|++++. .+.|+
T Consensus 13 gdpde~~~~~~~~--~G~~~~KiKvG~~~~~~D~~~i~~vr~~~pd~~L~vDaN~~w~~~~A~~~~~~l~~~~~~~ie~~ 90 (221)
T d1r6wa1 13 GDPDDLILKLADM--PGEKVAKVRVGLYEAVRDGMVVNLLLEAIPDLHLRLDANRAWTPLKGQQFAKYVNPDYRDRIAFL 90 (221)
T ss_dssp SCHHHHHHHHHTC--CSSEEEEEECSSSCHHHHHHHHHHHHHHCTTEEEEEECTTCBCHHHHHHHHHTSCTTTGGGEEEE
T ss_pred CCHHHHHHHHHHc--CCCCeEEEeeCCCCHHHHHHHHHHHHHHCCCCeEEEeCCCCCCHHHHHHHHHHHHHhhcCCeeee
Confidence 4899998887754 79999999999 57899999999999998899999999999999999999999998632 23599
Q ss_pred ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEE
Q 015289 263 EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMI 341 (409)
Q Consensus 263 EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~ 341 (409)
|||++ +.++++++++ .+++||++||++.+..+ ..+..+++|++|+|++++| ++++++++++|+++|+++++
T Consensus 91 E~P~~--~~~~~~~l~~----~~~ipIa~dEs~~~~~~--~~~~~~~~d~v~ik~~~~GGit~~~kia~~A~~~gl~~~~ 162 (221)
T d1r6wa1 91 EEPCK--TRDDSRAFAR----ETGIAIAWDESLREPDF--AFVAEEGVRAVVIKPTLTGSLEKVREQVQAAHALGLTAVI 162 (221)
T ss_dssp ECCBS--SHHHHHHHHH----HHCCCEEESGGGGSTTC--CCCCCTTEEEEEECHHHHCCHHHHHHHHHHHHHTTCEEEE
T ss_pred cchhh--hhhHHHHHhh----cccchhhhccccchhHH--HHHHHhcCcEEEecccccccHHHHHHHHHHHHHcCCcEEE
Confidence 99996 4567888764 68899999999988654 3456678999999999997 99999999999999999999
Q ss_pred ccCCchHHHHHHHHHHHccCCCCceeccccccccccCCCC
Q 015289 342 GGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVL 381 (409)
Q Consensus 342 ~~~~es~i~~~~~~hlaaa~~~~~~~e~~~p~~~~~d~~~ 381 (409)
||++||++++++++|+|+++++..++++++..++.+|++.
T Consensus 163 ~~~~es~ig~~a~~hlaa~~~~~~~~gldt~~~~~~d~~~ 202 (221)
T d1r6wa1 163 SSSIESSLGLTQLARIAAWLTPDTIPGLDTLDLMQAQQVR 202 (221)
T ss_dssp BCSSCCHHHHHHHHHHHHHHCTTSCCBCTTGGGBSCEESS
T ss_pred cCCcchHHHHHHHHHHHHhCCCCCCCCCCchhHHhhcccc
Confidence 9999999999999999999988788889987777666654
|
| >d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Probab=99.97 E-value=1e-30 Score=243.47 Aligned_cols=194 Identities=18% Similarity=0.218 Sum_probs=158.0
Q ss_pred CCCCCeeeeeeeecCCCHHHHHHHHHHHH----HcCCCeEEEecCCChhHHHH-------HHHHHHhh-CCCcEEEEe--
Q 015289 170 GGVSNTITTDITIPIVSPAEAAELASKYR----KQGFTTLKLKVGKNLKEDIE-------VLRAIRAV-HPDSSFILD-- 235 (409)
Q Consensus 170 Gg~~~~i~~~~~i~~~~~~~~~~~~~~~~----~~Gf~~~KiKvG~~~~~d~~-------~l~avr~~-~~~~~l~vD-- 235 (409)
|++.+.||+|.+.+.....+..+.+.+.+ ..||+.+|+|+|++.+.|.+ +++++|+. +++..|++|
T Consensus 1 G~~~~~VPiy~~~G~~~~~~~d~~i~k~~~~~~~~~~~~vK~K~G~~~~~~~e~~~~i~~rI~~~r~~~g~~~~l~iD~~ 80 (253)
T d1kcza1 1 GAEINAVPVFAQSGDDRYDNVDKMIIKEADVLPHALINNVEEKLGLKGEKLLEYVKWLRDRIIKLRVREDYAPIFHIDVY 80 (253)
T ss_dssp TCCCCCCCEECCCTTCTTHHHHHHHHTTCSEEEECCCCCCCCCCCTTSHHHHHHHHHHHHHHHHHCSSTTCCCEEEEECT
T ss_pred CCCcCCCCeeeccCCcccccHHHHHHHHhhhhhhhhhhhhchhcCCCccccHHHHHHHHHHHHHHhcccccCceeeehhh
Confidence 45667888888877665544333333222 35899999999987666554 77777776 789999999
Q ss_pred ----CCCCCCHHHHHHHHHHHHhCCCC-CceeecCCCCCC----HHHHHHhHHHh-hccCCCeEEeCCCCCCHHHHHHHH
Q 015289 236 ----ANEGYKPQEAVEVLEKLYEMGVT-PVLFEQPVHRDD----WEGLGHVSHIA-KDKFGVSVAADESCRSLDDVKKIV 305 (409)
Q Consensus 236 ----aN~~w~~~~A~~~~~~L~~~~l~-~~~iEeP~~~~d----~~~~~~l~~~~-~~~~~ipIa~dEs~~~~~~~~~~i 305 (409)
+|++|++++|+++++.|++.... +.|||||++.+| ++++++|++.+ .+.+++||++||+++++.++.+++
T Consensus 81 ~~~~~n~~~~~~eai~~~~~L~~~~~~y~i~iEqP~~~~d~~~~~e~~a~lr~~~~~~g~~vpI~~DE~~~~~~d~~~~i 160 (253)
T d1kcza1 81 GTIGAAFDVDIKAMADYIQTLAEAAKPFHLRIEGPMDVEDRQKQMEAMRDLRAELDGRGVDAELVADEWCNTVEDVKFFT 160 (253)
T ss_dssp THHHHHTTTCHHHHHHHHHHHHHHHTTSCEEEECSBCCSSHHHHHHHHHHHHHHHHHHTCCEEEEECTTCCSHHHHHHHH
T ss_pred hccCccCCCCHHHHHHHHHHHHHhcCCCCceEecCCCCccHhhHHHHHHHHHHHHhccCCccceeccccccCHHHHHHHH
Confidence 57799999999999999875321 349999999998 45677776532 124679999999999999999999
Q ss_pred HcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEc-cCCchHHHHHHHHHHHccCCC
Q 015289 306 KGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIG-GMVETRLAMGFAGHLSAGLGC 363 (409)
Q Consensus 306 ~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~-~~~es~i~~~~~~hlaaa~~~ 363 (409)
+.+++|++|+|++++| ++++++++++|+++|+++++| +|.||.++.++.+|+|.|.+.
T Consensus 161 ~~~a~d~v~iK~~k~GGi~~al~~~~~a~~~Gi~~~vg~~~~Et~~s~~a~~hla~A~~~ 220 (253)
T d1kcza1 161 DNKAGHMVQIKTPDLGGVNNIADAIMYCKANGMGAYCGGTCNETNRSAEVTTNIGMACGA 220 (253)
T ss_dssp HTTCSSEEEECTGGGSSTHHHHHHHHHHHHTTCEEEECCCTTSCHHHHHHHHHHHHHHTC
T ss_pred HhCCcCeeeccccccCCHHHHHHHHHHHHHcCCcEEEcCccCCcchHHHHHHHHHHhcCc
Confidence 9999999999999998 999999999999999999986 589999999999999998753
|
| >d1jpma2 d.54.1.1 (A:1-125) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=99.96 E-value=8.1e-29 Score=206.98 Aligned_cols=124 Identities=31% Similarity=0.523 Sum_probs=115.8
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHcCCCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPAM 124 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~~ 124 (409)
|||++|+++++++|+++||.++.++.+.++.++|+|+|++|++||||+.+.+.+++|+.+.+...+++ +.|.++|+++.
T Consensus 1 MkI~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~iv~i~t~~G~~G~GE~~~~~~~~~e~~~~~~~~i~~~~~p~l~g~~~~ 80 (125)
T d1jpma2 1 MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSIESAIHHVLKPALLGKSLA 80 (125)
T ss_dssp CBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEECCBTTTTCBCHHHHHHHHHHTHHHHHTTCBGG
T ss_pred CEEEEEEEEEEEeeccCCeEccCeEEEEEEEEEEEEEECCCCEEEEEecccccccccccchhHHHHHHHHHhhhcccCcc
Confidence 89999999999999999999999999999999999999999999999999888999998887777766 68999999999
Q ss_pred CHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCC
Q 015289 125 ALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171 (409)
Q Consensus 125 ~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg 171 (409)
+++.+++.+.+.++++. .|++||||||||++||..|+|||+||||
T Consensus 81 ~~~~~~~~l~~~~~~~~--~a~aaid~AlwDl~~K~~g~pl~~llGG 125 (125)
T d1jpma2 81 GYEAILHDIQHLLTGNM--SAKAAVEMALYDGWAQMCGLPLYQMLGG 125 (125)
T ss_dssp GHHHHHHHHHHSSSSCH--HHHHHHHHHHHHHHHHHTTSBHHHHTTC
T ss_pred cHHHHHHHhhhhccCcc--HHHHHHHHHHHHHHHHHcCCCHHHHcCc
Confidence 99999999988777764 5799999999999999999999999998
|
| >d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Probab=99.96 E-value=1.2e-28 Score=228.84 Aligned_cols=190 Identities=15% Similarity=0.204 Sum_probs=154.9
Q ss_pred CeeeeeeeecCCCHHHHHHHH----HHHHHcCCCeEEEecCCC-------hhHHHHHHHHHHhh-CCCcEEEEeCCC---
Q 015289 174 NTITTDITIPIVSPAEAAELA----SKYRKQGFTTLKLKVGKN-------LKEDIEVLRAIRAV-HPDSSFILDANE--- 238 (409)
Q Consensus 174 ~~i~~~~~i~~~~~~~~~~~~----~~~~~~Gf~~~KiKvG~~-------~~~d~~~l~avr~~-~~~~~l~vDaN~--- 238 (409)
.+||+|.+.+....+.....+ ..+...+|+.+|.|+|.+ +++++++++++|.. +++..|++|+|+
T Consensus 5 ~~VP~~g~~g~~~~~~~e~mI~~~a~~~~~~~~~~lk~kvG~~g~~~~e~~~~~~~rI~~~r~~~G~~~~i~iD~~~~~~ 84 (251)
T d1kkoa1 5 EAIPLFGQSGDDRYIAVDKMILKGVDVLPHALINNVEEKLGFKGEKLREYVRWLSDRILSLRSSPRYHPTLHIDVYGTIG 84 (251)
T ss_dssp CCCCEECCCTTCTTHHHHHHHHTTCSEEEETTCCCCCCCCCTTSHHHHHHHHHHHHHHHHHCSSTTCCCEEEEECTTHHH
T ss_pred CCcccccccCCCcccchHHHHHhhhHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhCcCCCcceeeccccccc
Confidence 467777666665544322222 122235799999999953 45677889999886 899999999766
Q ss_pred ---CCCHHHHHHHHHHHHhCCC-CCceeecCCCC----CCHHHHHHhHHHh-hccCCCeEEeCCCCCCHHHHHHHHHcCC
Q 015289 239 ---GYKPQEAVEVLEKLYEMGV-TPVLFEQPVHR----DDWEGLGHVSHIA-KDKFGVSVAADESCRSLDDVKKIVKGNL 309 (409)
Q Consensus 239 ---~w~~~~A~~~~~~L~~~~l-~~~~iEeP~~~----~d~~~~~~l~~~~-~~~~~ipIa~dEs~~~~~~~~~~i~~~a 309 (409)
+|++++|++++++|.+... .+.|||||++. +|+++++++++.+ ++.+++||++||++.+.++++++++.++
T Consensus 85 ~~~~~~~~~ai~~l~~L~~~~~~~~l~IEqP~~~~~~~~d~~gl~~l~~~l~~~g~~vpI~~DE~~~t~~d~~~~i~~~a 164 (251)
T d1kkoa1 85 LIFDMDPVRCAEYIASLEKEAQGLPLYIEGPVDAGNKPDQIRMLTAITKELTRLGSGVKIVADEWCNTYQDIVDFTDAGS 164 (251)
T ss_dssp HHTTTCHHHHHHHHHHTGGGGTTSCEEEECCCCCSSHHHHHHHHHHHHHHHHHHTCCCEEEECTTCCSHHHHHHHHHTTC
T ss_pred cccCCCHHHHHHHHHHHHHhcCCCceeecCCcccccchHHHHHHHHHHHHHhccCCCceEeccceeCCHHHHHHHHHhCC
Confidence 8999999999999987532 13499999974 5788899987643 2246799999999999999999999999
Q ss_pred CCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEc-cCCchHHHHHHHHHHHccCCC
Q 015289 310 ADVINIKLAKVG-VLGALEIIEVVRASGLNLMIG-GMVETRLAMGFAGHLSAGLGC 363 (409)
Q Consensus 310 ~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~-~~~es~i~~~~~~hlaaa~~~ 363 (409)
+|++|+|++++| ++++++++++|+++|+++++| ++.||+++.++++|+|++.+.
T Consensus 165 ~d~v~iK~~k~GGi~~a~~~~~~A~~~Gi~~~~g~~~~ET~~~~~a~~hla~a~~~ 220 (251)
T d1kkoa1 165 CHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQGGTCNETEISARTCVHVALAARP 220 (251)
T ss_dssp CSEEEECGGGGSSTHHHHHHHHHHHHHTCEEEECCCTTSCHHHHHHHHHHHHHHCC
T ss_pred ccceeccccccCCHHHHHHHHHHHHHCCCeEEEeCcccCcchHHHHHHHHHHhcCC
Confidence 999999999998 999999999999999999988 589999999999999987654
|
| >d1nu5a2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Probab=99.95 E-value=4.2e-27 Score=196.82 Aligned_cols=123 Identities=21% Similarity=0.346 Sum_probs=112.0
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCC--ccCcccHHHHHHHHHH-HHHHHcCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP--HVTAEDQQTAMVKASE-ACEVLKESP 122 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~--~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (409)
|||++|+++.+++||++||++|.++...++.++|||+| ||++||||+.+.+ .+++|+.+.+...+++ +.|.++|++
T Consensus 1 MKI~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~~V~i~~-dG~~G~GE~~~~~~~~~~~~~~~~~~~~i~~~~~p~l~g~~ 79 (126)
T d1nu5a2 1 MKIEAISTTIVDVPTRRPLQMSFTTVHKQSYVIVQVKA-GGLVGIGEGGSVGGPTWGSESAETIKVIIDNYLAPLLVGKD 79 (126)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEE-TTEEEEEEECCSTTTTTSSCCHHHHHHHHHHTHHHHHTTSB
T ss_pred CEEEEEEEEEEecccCCCeEecceEEEeeeEEEEEEEc-CCeEEEeeccccCCCccccccHHHHHHHHHHHhhhhhhhcC
Confidence 89999999999999999999999999999999999997 5999999998754 5678888877776776 689999999
Q ss_pred CCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCC
Q 015289 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg 171 (409)
+.+++.+++.+...++|+. .|++||||||||++||..|+|||+||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~--~A~aaid~AlwDl~~K~~~~pl~~llGG 126 (126)
T d1nu5a2 80 ASNLSQARVLMDRAVTGNL--SAKAAIDIALHDLKARALNLSIADLIGG 126 (126)
T ss_dssp TTCHHHHHHHHHHHCSSCH--HHHHHHHHHHHHHHHHHTTCBHHHHHTC
T ss_pred cccHHHHHHHhhhhhhccc--hHHHHHHHHHHHHHHHHcCCCHHHHcCC
Confidence 9999999999988788774 5799999999999999999999999998
|
| >d2chra2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Probab=99.95 E-value=2.3e-27 Score=198.39 Aligned_cols=123 Identities=27% Similarity=0.410 Sum_probs=111.6
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccC--CccCcccHHHHHHHHHH-HHHHHcCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKESP 122 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (409)
|||++|+++++++||++||++|.++.+.++.++|+|+| ||.+||||+.+. +.+++|+.+.+...+++ +.|.++|++
T Consensus 1 MkI~~ie~~~~~~Pl~~p~~~s~~~~~~~~~v~v~i~~-dG~~G~GE~~~~~~~~~~~~~~~~~~~~l~~~l~p~lig~~ 79 (126)
T d2chra2 1 MKIDAIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVYS-EGLVGVGEGGSVGGPVWSAECAETIKIIVERYLAPHLLGTD 79 (126)
T ss_dssp CCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEB-TTBCCEEECCCSTTTTTSSCCHHHHHHHHHHHTHHHHTTSC
T ss_pred CEEEEEEEEEEeccccCceEeccceEeeeeEEEEEEEc-CCceEeEeecccCCCccccchHHHHHHHHHHHhcccccccc
Confidence 89999999999999999999999999999999999998 599999999874 45778888777766665 589999999
Q ss_pred CCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCC
Q 015289 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg 171 (409)
+.+++.+++.+...++++. .|++||||||||++||..|+|||+||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~--~A~aaid~AlwDl~~K~~~~pl~~llGG 126 (126)
T d2chra2 80 AFNVSGALQTMARAVTGNA--SAKAAVEMALLDLKARALGVSIAELLGG 126 (126)
T ss_dssp TTCHHHHHHHHHTTCSSCH--HHHHHHHHHHHHHHHHHTTCCHHHHTTC
T ss_pred cccHHHHHHHhhhccccch--HHHHHHHHHHHHHHHHHcCCCHHHHcCc
Confidence 9999999999988777774 4799999999999999999999999998
|
| >d1wufa2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Probab=99.93 E-value=3.4e-26 Score=191.27 Aligned_cols=123 Identities=26% Similarity=0.369 Sum_probs=109.8
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEecc--CCccCcccHHHHHHHHHH-HHHHHcCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPV--LPHVTAEDQQTAMVKASE-ACEVLKESP 122 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~--~~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (409)
|||++|+++++++||++||++|.++.+.++.++|+|+|++|++||||+.+ .+.|++|+...+...+++ +.|.++|++
T Consensus 1 Mki~~i~~~~~~lPl~~p~~~s~~~~~~~~~~iv~i~t~~G~~G~GE~~~~~~~~~~~e~~~~~~~~l~~~l~p~l~g~~ 80 (126)
T d1wufa2 1 MYFQKARLIHAELPLLAPFKTSYGELKSKDFYIIELINEEGIHGYGELEAFPLPDYTEETLSSAILIIKEQLLPLLAQRK 80 (126)
T ss_dssp EECCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSSCEEEEEECCCSSTTSSSCCHHHHHHHHHHTTHHHHHHCE
T ss_pred CEEEEEEEEEEeccccCCEECcCEEEEEEEEEEEEEEECCCcEEEEEEeecCccCCChhhhhhhhheeeecccchhcCCC
Confidence 89999999999999999999999999999999999999999999999864 567889998888777765 689999999
Q ss_pred CCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCC
Q 015289 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg 171 (409)
+.+.+.+++.+. .+.++. .|++||||||||++||..|+|||+|||.
T Consensus 81 ~~~~~~i~~~~~-~~~~~~--~A~aaid~AlwDl~~K~~~~pl~~lLGa 126 (126)
T d1wufa2 81 IRKPEEIQELFS-WIQGNE--MAKAAVELAVWDAFAKMEKRSLAKMIGA 126 (126)
T ss_dssp ESSTTHHHHHHT-TSCSCH--HHHHHHHHHHHHHHHHHTTSBHHHHTTC
T ss_pred chhHHHHHHHhh-hccCch--HHHHHHHHHHHHHHHHHcCCcHHHHhCc
Confidence 999998887664 356664 4799999999999999999999999984
|
| >d2gdqa2 d.54.1.1 (A:4-118) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Probab=99.93 E-value=3.7e-25 Score=181.91 Aligned_cols=115 Identities=26% Similarity=0.283 Sum_probs=99.5
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (409)
|||++|+++++++|+++||.+|.++.+.++.++|+|+||+|++||||+.+.. ...... ..+.+.|.++|+++.+
T Consensus 1 mKI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~v~i~~d~G~~G~Ge~~~~~----~~~~~~--i~~~l~~~l~g~~~~~ 74 (115)
T d2gdqa2 1 VKIVRIETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGIDGWGECVDWL----PALHVG--FTKRIIPFLLGKQAGS 74 (115)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECSCH----HHHHHH--HHHTHHHHHTTSBTTC
T ss_pred CEEEEEEEEEEeeecCCceEecCeEEEeeeEEEEEEEECCcceEEEecCCch----hhhHHH--HHHHHhhhhcccChhh
Confidence 8999999999999999999999999999999999999999999999997632 111111 1244789999999999
Q ss_pred HHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCC
Q 015289 126 LGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171 (409)
Q Consensus 126 ~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg 171 (409)
.+.+++.+... + ..|++||||||||+.||..|+|||+||||
T Consensus 75 ~~~~~~~~~~~---~--~~a~aaid~AlwDl~~K~~~~Pl~~lLGG 115 (115)
T d2gdqa2 75 RLSLVRTIQKW---H--QRAASAVSMALTEIAAKAADCSVCELWGG 115 (115)
T ss_dssp HHHHHHHHHHH---C--HHHHHHHHHHHHHHHHHHTTSBHHHHTTC
T ss_pred HHHHHHHHHHh---h--hHHHHHHHHHHHHHHHHHhCCCHHHHcCC
Confidence 99999888653 2 35899999999999999999999999998
|
| >d1muca2 d.54.1.1 (A:4-130) Muconate-lactonizing enzyme (cis muconate cycloisomerase) {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Muconate-lactonizing enzyme (cis muconate cycloisomerase) species: Pseudomonas putida [TaxId: 303]
Probab=99.92 E-value=1e-24 Score=181.68 Aligned_cols=123 Identities=24% Similarity=0.364 Sum_probs=97.4
Q ss_pred eEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCC--ccCcccHHHHHHHHHH-HHHHHcCCCC
Q 015289 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP--HVTAEDQQTAMVKASE-ACEVLKESPA 123 (409)
Q Consensus 47 kI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~--~~~~e~~~~~~~~~~~-~~~~l~g~~~ 123 (409)
.|++|+++++++|+++||++|.++.+.++.++|||+|++|++||||+.+.+ .+..+........+.. +.|.+.+.++
T Consensus 2 ~I~~ie~~~~~~Pl~~p~~~s~~~~~~~~~~iV~i~td~G~~G~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (127)
T d1muca2 2 LIERIDAIIVDLPTIRPHKLAMHTMQQQTLVVLRVRCSDGVEGIGEATTIGGLAYGYESPEGIKANIDAHLAPALIGLAA 81 (127)
T ss_dssp BEEEEEEEEEEEEBCC---------CEEEEEEEEEEETTSCEEEEEEECSTTTTTSSCCHHHHHHHHHHTHHHHHTTSBT
T ss_pred EEeEEEEEEEeccccCceEccceeEeeeeEEEEEEEeCCCcEEEEEeeccccccccccchHHHHHHHHhhhcccccccch
Confidence 489999999999999999999999999999999999999999999998743 3455665555544444 5788999999
Q ss_pred CCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCC
Q 015289 124 MALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171 (409)
Q Consensus 124 ~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg 171 (409)
.+...++..+.....++ ..|++||||||||++||..|+|||+||||
T Consensus 82 ~~~~~~~~~~~~~~~~~--~~a~aaid~AlwDl~~K~~g~Pl~~lLGG 127 (127)
T d1muca2 82 DNINAAMLKLDKLAKGN--TFAKSGIESALLDAQGKRLGLPVSELLGG 127 (127)
T ss_dssp TCHHHHHHHHHHHCSSC--HHHHHHHHHHHHHHHHHHHTCBHHHHTTC
T ss_pred hhHHHHHHHhhhhcccc--hHHHHHHHHHHHHHHHHHcCCCHHHHcCC
Confidence 99999998887776665 35799999999999999999999999998
|
| >d1wuea2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.91 E-value=2.7e-24 Score=179.05 Aligned_cols=122 Identities=25% Similarity=0.311 Sum_probs=105.2
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccC--CccCcccHHHHHHHHHH-HHHHHcCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKESP 122 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (409)
|||++|+++++++|+++||.+|.++.+.++.++|+|+|++|++||||+.+. +.+++|+.......+.. +.+.+.+++
T Consensus 1 MKI~~ie~~~~~~pl~~p~~~s~~~~~~~~~~~v~i~t~~G~~G~GE~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 80 (126)
T d1wuea2 1 MNIQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQGFGELVAFEQPDYVQETLVTERFIIQQHLIPLLLTEA 80 (126)
T ss_dssp CCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCCSSTTSSSCCHHHHHHHHHHTHHHHHTTSC
T ss_pred CEEeEEEEEEEeccccCCEEccCeEEEeeeEEEEEEEECCCcEEEEEEeccCccccchhhhhhhhhhhhccccccccccc
Confidence 899999999999999999999999999999999999999999999999864 44667777666655554 568899999
Q ss_pred CCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhC
Q 015289 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG 170 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLG 170 (409)
..+.+.+++.+.. ..++. .|++||||||||++||..|+|||+|||
T Consensus 81 ~~~~~~~~~~~~~-~~~~~--~a~aaid~AlwDl~ak~~~~pl~~lLG 125 (126)
T d1wuea2 81 IEQPQEVSTIFEE-VKGHW--MGKAALETAIWDLYAKRQQKSLTEFFG 125 (126)
T ss_dssp CCSTHHHHHHGGG-SCSCH--HHHHHHHHHHHHHHHHHTTSBGGGGSS
T ss_pred cccHHHHHHHHhh-ccCcc--HHHHHHHHHHHHHHHHHhCCCHHHHhC
Confidence 9988887766543 44553 479999999999999999999999998
|
| >d2mnra2 d.54.1.1 (A:3-132) Mandelate racemase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Probab=99.91 E-value=5.9e-24 Score=177.89 Aligned_cols=125 Identities=24% Similarity=0.307 Sum_probs=99.3
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (409)
|+|++|+++++++|+++||.+|.++.+.++.++|+|+|++|++||||+.+.+..+.+... ..++.+.+.+.+.+ .+
T Consensus 2 ~~I~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~~V~i~t~~G~~G~Ge~~~~~~~~~~~~~---~~~~~~~~~l~~~~-~~ 77 (130)
T d2mnra2 2 VLITGLRTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYTPVALKSLK---QLLDDMAAMIVNEP-LA 77 (130)
T ss_dssp CBEEEEEEEEEEECCSSCEEETTEEECSEEEEEEEEEETTSCEEEEEEECSSGGGHHHHH---HHHHHHHHHHTTSB-SC
T ss_pred CEEEEEEEEEEEecccCCeeccceEEeeceEEEEEEEECCccceeeeeeecCcccchhHH---HHHHHHHHHhccCC-CC
Confidence 899999999999999999999999999999999999999999999999876544433322 22344667777654 45
Q ss_pred HHHHHHHHHhhc--CCC--hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCCCC
Q 015289 126 LGSVFGVVAGLL--PGH--QFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSN 174 (409)
Q Consensus 126 ~~~~~~~~~~~~--~g~--~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~~~ 174 (409)
....++.+.... .++ ....|++|||+||||++||..|+|||+||||+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~a~aaid~AlwDl~~K~~~~Pl~~lLGG~~r 130 (130)
T d2mnra2 78 PVSLEAMLAKRFCLAGYTGLIRMAAAGIDMAAWDALGKVHETPLVKLLGANAR 130 (130)
T ss_dssp HHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHHHHHTTSBHHHHTTCCCC
T ss_pred HHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHHHHhCCCHHHHhCCCCC
Confidence 566666665432 122 2346899999999999999999999999999753
|
| >d1sjda2 d.54.1.1 (A:1-125) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Probab=99.91 E-value=5.4e-24 Score=176.83 Aligned_cols=122 Identities=24% Similarity=0.364 Sum_probs=106.4
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccC--CccCcccHHHHHHHHHH-HHHHHcCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKESP 122 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (409)
|||++|+++++++|+++||.+|.++.+.++.++|+++|++| +||||+.+. +.+++|+.......++. +.+.+.+.+
T Consensus 1 MKI~~i~~~~i~~Pl~~p~~~s~~~~~~~~~~iv~l~~~~g-~G~Ge~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 79 (125)
T d1sjda2 1 MKLSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAG-EGWGECVTMAGPLYSSEYNDGAEHVLRHYLIPALLAAE 79 (125)
T ss_dssp CCCCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSC-EEEEECCCBSSSSSSSCBHHHHHHHHHHTHHHHHHHSS
T ss_pred CEEEEEEEEEEeccccCCEEccCceEeeeeEEEEEEEecCc-eEEEEEEecCccccchhhhhhhhhhhhhccchhhcCCC
Confidence 89999999999999999999999999999999999999888 799999864 55788888777666554 578888999
Q ss_pred CCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCC
Q 015289 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171 (409)
Q Consensus 123 ~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg 171 (409)
+.+.+.+++.+.. .+++ ..|++||||||||+.||..|+|||+|||.
T Consensus 80 ~~~~~~~~~~~~~-~~~~--~~a~aaid~AlwDl~ak~~~~Pl~~lLGa 125 (125)
T d1sjda2 80 DITAAKVTPLLAK-FKGH--RMAKGALEMAVLDAELRAHERSFAAELGS 125 (125)
T ss_dssp SCCHHHHHHHHTT-SCSC--HHHHHHHHHHHHHHHHHHTTCBHHHHHTC
T ss_pred ccCHHHHHHHHHH-ccCC--cHHHHHHHHHHHHHHHHHcCCcHHHHhCc
Confidence 9999998877654 4555 35799999999999999999999999984
|
| >d2gl5a2 d.54.1.1 (A:1-122) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Probab=99.91 E-value=2.2e-24 Score=179.09 Aligned_cols=117 Identities=17% Similarity=0.264 Sum_probs=94.8
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (409)
|||++|+++.+++|++.++..+ ++.++|+|+||+|++||||+.+.+..+. .......+.+.|.++|+++.+
T Consensus 1 MKI~~Ie~~~~~~p~~~~~~~~------~~~iiV~i~td~Gi~G~Ge~~~~~~~~~---~~~~~~~~~~~~~lig~~~~~ 71 (122)
T d2gl5a2 1 LKITSIEVFDCELKKRDQTMSS------YNPVLIRVNTDSGLSGIGEVGLAYGAGA---KAGVGIIRDLAPLIVGEDPLN 71 (122)
T ss_dssp CCEEEEEEEECCGGGTCGGGTT------CCCEEEEEEETTSCEEEEEESCSSSTTH---HHHHHHHHHHGGGTTTSCTTC
T ss_pred CEEeEEEEEEEcCCCCCCcccc------ceeEEEEEEECCCCEEEEeeccccccch---HHHHHHHHHHHhhhcccccch
Confidence 8999999999999998875443 4679999999999999999976543222 222333466899999999999
Q ss_pred HHHHHHHHHhhc-----CCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCC
Q 015289 126 LGSVFGVVAGLL-----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171 (409)
Q Consensus 126 ~~~~~~~~~~~~-----~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg 171 (409)
++++|+.+++.. .+..+..|+||||+||||++||..|+|||+||||
T Consensus 72 ~e~~~~~l~~~~~~~~~~~~~~~~a~aaid~AlwDl~~K~~~~PL~~lLGG 122 (122)
T d2gl5a2 72 IEKIWEFFFRKTFWGMGGGNVFYAGMSAIDIALWDIKGKYLGVPVYQLLGG 122 (122)
T ss_dssp HHHHHHHHHHSSSGGGSCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTS
T ss_pred hhHHHHHHhhhcccccccCCcccchHHHHHHHHHHHHHHHhCCCHHHHcCC
Confidence 999999986632 1222346899999999999999999999999997
|
| >d1rvka2 d.54.1.1 (A:1-126) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.91 E-value=5.1e-24 Score=177.89 Aligned_cols=119 Identities=18% Similarity=0.182 Sum_probs=97.7
Q ss_pred eeEeEEEEEEEEecCccceeecc----ceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIAT----SRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKES 121 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~----~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~ 121 (409)
|||++|+++.+++|+++|+..+. +..+..+.++|+|+|++|++||||+.+.. ++.+ .+. +.+.|+++|+
T Consensus 1 MkIt~v~~~~~~~pl~~~~~~a~~~~~g~~~~~~~v~V~v~td~G~~G~Ge~~~~~-~~~~----~i~--~~l~~~lig~ 73 (126)
T d1rvka2 1 MIITDVEVRVFRTTTRRHSDSAGHAHPGPAHQVEQAMLTVRTEDGQEGHSFTAPEI-VRPH----VIE--KFVKKVLIGE 73 (126)
T ss_dssp CBEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEETTSCEEEEEECGGG-GCHH----HHH--HTHHHHHTTS
T ss_pred CEEEEEEEEEEEeeCCCccccccccCCCCcceeEEEEEEEEECCCCEEEEEeCCHH-HHHH----HHH--HHHHHHHhhc
Confidence 89999999999999999998874 34677899999999999999999997532 2221 111 3367999999
Q ss_pred CCCCHHHHHHHHHhhc---CCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCC
Q 015289 122 PAMALGSVFGVVAGLL---PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171 (409)
Q Consensus 122 ~~~~~~~~~~~~~~~~---~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg 171 (409)
++.+.+.+|+.+.... .+.....|+|||||||||++||.+|+|||+||||
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~aavdiAlwDl~~K~~g~Pl~~LLGG 126 (126)
T d1rvka2 74 DHRDRERLWQDLAHWQRGSAAQLTDRTLAVVDCALWDLAGRSLGQPVYKLIGG 126 (126)
T ss_dssp BTTCHHHHHHHHHHHHTTTTTCSCHHHHHHHHHHHHHHHHHHHTCBHHHHHCC
T ss_pred CcchhhhhhhhhccccccCCcchhhHHHHHHHHHHHHHHHHHcCCCHHHHcCc
Confidence 9999999998886532 1222357899999999999999999999999998
|
| >d1r0ma2 d.54.1.1 (A:6-132) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Probab=99.90 E-value=1.1e-23 Score=175.65 Aligned_cols=123 Identities=20% Similarity=0.187 Sum_probs=95.8
Q ss_pred eeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCC--ccCcccHHHHHHHHHH-HHHHHcCC
Q 015289 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP--HVTAEDQQTAMVKASE-ACEVLKES 121 (409)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~--~~~~e~~~~~~~~~~~-~~~~l~g~ 121 (409)
.|||++|+++.+++||+.||.+|.++.+.++.++|++++ +|.+||||+.+.+ .+++|........+.. +.|.+.|+
T Consensus 2 m~kI~~ie~~~~~~Pl~~p~~~s~~~~~~~~~vvv~~~~-~G~~G~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (127)
T d1r0ma2 2 MFKIEAAEIVVARLPLKFRFETSFGVQTHKVVPLLILHG-EGVQGVAEGTMEARPMYREETIAGALDLLRGTFLPAILGQ 80 (127)
T ss_dssp CEECCEEEEEEEEEEBC----------CEEEEEEEEEEE-TTEEEEEECCCBSSSSSSSCBHHHHHHHHHHTHHHHHTTC
T ss_pred CceEEEEEEEEEeecccCCEECcCcEEEeeeEEEEEEEc-CCcEEEEEEEcCCCcccchhhhhhhhhhhhhhcccccccC
Confidence 699999999999999999999999999999999999996 5999999998754 3677777666655554 57899999
Q ss_pred CCCCHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCC
Q 015289 122 PAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171 (409)
Q Consensus 122 ~~~~~~~~~~~~~~~~~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg 171 (409)
++.+++.++..+.. +.++ +.|++||||||||++||..|+|||++|||
T Consensus 81 ~~~~~~~~~~~~~~-~~~~--~~a~aaid~AlwDl~aK~~~~pl~~llGG 127 (127)
T d1r0ma2 81 TFANPEAVSDALGS-YRGN--RMARAMVEMAAWDLWARTLGVPLGTLLGG 127 (127)
T ss_dssp EESSHHHHHHTTTT-SCSC--HHHHHHHHHHHHHHHHHHHTCBHHHHHTC
T ss_pred ChhhHHHHhhhhcc-cCCc--hHHHHHHHHHHHHHHHHHhCCcHHHHcCC
Confidence 99999988876544 4445 35799999999999999999999999998
|
| >d1bqga2 d.54.1.1 (A:12-143) D-glucarate dehydratase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: D-glucarate dehydratase species: Pseudomonas putida [TaxId: 303]
Probab=99.87 E-value=2.6e-22 Score=168.76 Aligned_cols=118 Identities=18% Similarity=0.169 Sum_probs=98.2
Q ss_pred eeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCC
Q 015289 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAM 124 (409)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~ 124 (409)
+.||++||++++..|++.++..+.+....+..++|||+||+|++||||+.+.. .. ...++.+.+.++|+++.
T Consensus 2 ~p~It~ve~~~v~~~~~~~~~~~g~~~~~~~~~lV~i~td~G~~G~Ge~~~~~-----~~---~~~~~~~~~~~ig~~~~ 73 (132)
T d1bqga2 2 APVITDLKVVPVAGHDSMLLNLSGAHGPLFTRNILILTDSSGHVGVGEVPGGE-----GI---RKTLEDARHLLINQSIG 73 (132)
T ss_dssp CCBEEEEEEEEEEEECCCEEETTEECCSEEEEEEEEEEETTSCEEEEEEECCH-----HH---HHHHHTTHHHHBTCBGG
T ss_pred CCEEEEEEEEEEeccCcccccCCCCCCCcceEEEEEEEECCCcEEEEEeCCcH-----hH---HHHHHHhhhhhcCcChH
Confidence 45999999999999999999998877777889999999999999999997532 11 12235578999999999
Q ss_pred CHHHHHHHHHhhcCCC-------------hhhHHHHHHHHHHHHHHHhhcCCchHHHhC
Q 015289 125 ALGSVFGVVAGLLPGH-------------QFASVRAAVEMALIDAVAKSVSMPLWRLFG 170 (409)
Q Consensus 125 ~~~~~~~~~~~~~~g~-------------~~~~a~said~AlwDl~gk~~g~Pl~~LLG 170 (409)
+++.+++.+.+..... ....|+|||||||||++||.+|+|||+|||
T Consensus 74 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pl~~LLG 132 (132)
T d1bqga2 74 NYQSLLNKVRNAFADRDVGGRGLQTFDLRIAVHAVTAVESALLDLLGQHLQVPVAALLG 132 (132)
T ss_dssp GHHHHHHHHHHHTCC------------CHHHHHHHHHHHHHHHHHHHHHHTCBGGGGST
T ss_pred HHHHHHHHHHHHhcccCcccccccccccchHHHHHHHHHHHHHHHHHHHcCCcHHHHcC
Confidence 9999999887643211 134689999999999999999999999998
|
| >d1jdfa2 d.54.1.1 (A:5-137) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=7.5e-22 Score=166.07 Aligned_cols=118 Identities=15% Similarity=0.151 Sum_probs=96.5
Q ss_pred eeeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCC
Q 015289 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAM 124 (409)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~ 124 (409)
.++|++|+++++..|.+.++..+.+.......++|||+|++|++||||+.+.+ ... ..++.+.|.++|+++.
T Consensus 3 ~p~It~i~~~~v~~~~~~~~~~~~~~~~~~~~~iV~l~t~~Gi~G~Ge~~~~~-----~~~---~~~~~~~~~l~g~~~~ 74 (133)
T d1jdfa2 3 TPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGE-----KIR---KTLEDAIPLVVGKTLG 74 (133)
T ss_dssp CCBEEEEEEEEEEEECCCBEETTEECCSEEEEEEEEEEETTSCEEEEEEECCH-----HHH---HHHHHHHHHHTTCBGG
T ss_pred CCeEEEEEEEEecccCcccccCCCCcCCccceEEEEEEECCCCEEEEEecCcH-----HHH---HHHHhhhhhhcCCChh
Confidence 47999999999999999999888666666778999999999999999997531 111 2235678999999999
Q ss_pred CHHHHHHHHHhhcC-------------CChhhHHHHHHHHHHHHHHHhhcCCchHHHhC
Q 015289 125 ALGSVFGVVAGLLP-------------GHQFASVRAAVEMALIDAVAKSVSMPLWRLFG 170 (409)
Q Consensus 125 ~~~~~~~~~~~~~~-------------g~~~~~a~said~AlwDl~gk~~g~Pl~~LLG 170 (409)
+++.+++.+..... ......|+|||||||||++||.+|+|||+|||
T Consensus 75 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pl~~LLG 133 (133)
T d1jdfa2 75 EYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLG 133 (133)
T ss_dssp GHHHHHHHHHHHTGGGGTTCSCSSSSCCCCHHHHHHHHHHHHHHHHHHHHTSBGGGGST
T ss_pred hHHHHHHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHcC
Confidence 99999988865321 01235689999999999999999999999998
|
| >d1tzza2 d.54.1.1 (A:1006-1145) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.85 E-value=1.1e-21 Score=166.59 Aligned_cols=119 Identities=18% Similarity=0.222 Sum_probs=82.1
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECC-----CceEEEEeccCCccCcccHHHHHHHHHHHHHHHcC
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSN-----GCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKE 120 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~-----G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g 120 (409)
|||++|+ .+++|++.|++++.++++++++++|+|+||+ |++||||+.+.+....+. ....+.|.++|
T Consensus 1 mkIvdi~--~~~vPl~~p~~~s~~~~~~~~~~lV~i~Td~G~~G~G~~G~g~~~~~~~~~~~~------~~~~~~~~lig 72 (140)
T d1tzza2 1 VRIVDVR--EITKPISSPIRNAYIDFTKMTTSLVAVVTDVVREGKRVVGYGFNSNGRYGQGGL------IRERFASRILE 72 (140)
T ss_dssp CCEEEEE--EEEEECCC---------CCCEEEEEEEEEEEECSSSEEEEEEECCTTSCCCHHH------HHHTHHHHHHT
T ss_pred CeEEEEE--EEEecCCCCcccccceeeceEEEEEEEEEeecccCcceEeeEecCCchhHHHHH------HHHHHHHHHhc
Confidence 7897665 6778999999999999999999999999994 467899987644332221 11336788888
Q ss_pred CCC----------CCHHHHHHHHHhhc--CCC-hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC
Q 015289 121 SPA----------MALGSVFGVVAGLL--PGH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV 172 (409)
Q Consensus 121 ~~~----------~~~~~~~~~~~~~~--~g~-~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~ 172 (409)
+++ .+.+.+++.+++.. .++ ....|+|||||||||+.||.+|+|||+||||+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~aaiDiAlWDl~gK~~g~Pl~~LLgg~ 137 (140)
T d1tzza2 73 ADPKKLLNEAGDNLDPDKVWAAMMINEKPGGHGERSVAVGTIDMAVWDAVAKIAGKPLFRLLAER 137 (140)
T ss_dssp SCGGGSBCTTSSSBCHHHHHHHHTTTCCSCCCSHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHH
T ss_pred ccHhhHhhhcccccChHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHHcCCcHHHHhccc
Confidence 765 35677888876532 222 22468999999999999999999999999984
|
| >d1yeya2 d.54.1.1 (A:2-140) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Probab=99.80 E-value=2.8e-20 Score=157.55 Aligned_cols=124 Identities=14% Similarity=0.101 Sum_probs=91.8
Q ss_pred eEeEEEEEEEEecCccceeec--cceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHcCCCCC
Q 015289 47 DVQRAENRPLNVPLIAPFTIA--TSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAM 124 (409)
Q Consensus 47 kI~~i~~~~~~~pl~~p~~~a--~~~~~~~~~~iVrl~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~ 124 (409)
.|++|+++.+++|+.++...+ ....+....++|+|+||+|..|+||+...+...+ ........+.+.|.++|+++.
T Consensus 2 tI~~v~~~~~r~P~~~~~~~s~a~~~~~~~~~~~V~i~td~g~~g~G~~~~~~~~~~--~~~~~~~~~~l~p~liG~~~~ 79 (139)
T d1yeya2 2 TIIALETHDVRFPTSRELDGSDAMNPDPDYSAAYVVLRTDGAEDLAGYGLVFTIGRG--NDVQTAAVAALAEHVVGLSVD 79 (139)
T ss_dssp BEEEEEEEEEECCGGGCC------CCSCCCEEEEEEEEESSCTTCEEEEEEEECSTT--HHHHHHHHHTTHHHHTTCBHH
T ss_pred eEEEEEEEEEEccCccCCCCcCCcccCCCcceeEEEEEECCCCcEEEEEEEecCCCh--HHHHHHHHHHHHHHhhCCCcc
Confidence 589999999999999988544 3344556789999999998888888765332112 122222235588999999999
Q ss_pred CHHHHHHHHHhhcC---------CC--hhhHHHHHHHHHHHHHHHhhcCCchHHHhCCC
Q 015289 125 ALGSVFGVVAGLLP---------GH--QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV 172 (409)
Q Consensus 125 ~~~~~~~~~~~~~~---------g~--~~~~a~said~AlwDl~gk~~g~Pl~~LLGg~ 172 (409)
+++.+|+.+++.+. +. ....|+||||+||||++||.+|+|||+|||+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~saIDiALWDl~gK~~~~Pl~~LL~~~ 138 (139)
T d1yeya2 80 KVIADLGAFARRLTNDSQLRWLGPEKGVMHMAIGAVINAAWDLAARAANKPLWRFIAEL 138 (139)
T ss_dssp HHHHCHHHHHHHHHTCHHHHTTCSSSHHHHHHHHHHHHHHHHHHHHHTTSBHHHHHHTS
T ss_pred cHHHHHHHHHHHhcccccccccCCcchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhhhc
Confidence 99988888765321 11 12358999999999999999999999999974
|
| >d2akza1 c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Human (Homo sapiens), gamma isoform [TaxId: 9606]
Probab=99.11 E-value=1.9e-10 Score=107.00 Aligned_cols=135 Identities=19% Similarity=0.359 Sum_probs=108.3
Q ss_pred HHHHhhC--CCcEEEEeCCC---------------------CCCHHHHHHHHHH-HHhCCCCCceeecCCCCCCHHHHHH
Q 015289 221 RAIRAVH--PDSSFILDANE---------------------GYKPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGH 276 (409)
Q Consensus 221 ~avr~~~--~~~~l~vDaN~---------------------~w~~~~A~~~~~~-L~~~~l~~~~iEeP~~~~d~~~~~~ 276 (409)
+++.+++ +++.|.+|+.. ..+.+|.+.+... +++|++ .+||+|+..+||+++++
T Consensus 89 ~Ai~~ag~~~~i~ialD~AASefy~~~kY~~~~~~~~~~~~~~t~delid~y~~l~~kYPI--isIEDP~~E~D~~gw~~ 166 (294)
T d2akza1 89 EAIDKAGYTEKIVIGMDVAASEFYRDGKYDLDFKSPTDPSRYITGDQLGALYQDFVRDYPV--VSIEDPFDQDDWAAWSK 166 (294)
T ss_dssp HHHHHHTCTTTCEEEEECCGGGGEETTEECTTTTSSCCGGGCBCHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHH
T ss_pred HHHhccCCCceEEEEechhhhhhhhcCcceeeecccCCccceecHHHHHHHHHHHhcccCe--EEEeCCCcccchhhHHH
Confidence 3444443 57888888741 2467888887664 578885 69999999999999999
Q ss_pred hHHHhhccCCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEeCCCCCc-HHHHHHHHHHHHHcCCcEEEccCC-chHHHHHH
Q 015289 277 VSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGF 353 (409)
Q Consensus 277 l~~~~~~~~~ipIa~dE-s~~~~~~~~~~i~~~a~div~~k~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~-es~i~~~~ 353 (409)
+++ +.++.|..|. .++++..+++.++.++++.+.+|+.++| ++++++.+.+|+++|+.+++++.. ||. -..
T Consensus 167 lt~----~lg~~ivGDDl~vTn~~rl~kgi~~~aanailIK~NQiGTltEt~ea~~la~~~g~~~ivShRsGETe--D~~ 240 (294)
T d2akza1 167 FTA----NVGIQIVGDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTEAIQACKLAQENGWGVMVSHRSGETE--DTF 240 (294)
T ss_dssp HHH----TCSSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCS--CCH
T ss_pred HHH----hcCcEEEccccccccHHHHHHHHhcCcCccceeccccchhHHHHHHHHHHHHHcCCcEEeeCCCCCcC--cch
Confidence 986 5677888876 6888899999999999999999999999 999999999999999999987653 443 235
Q ss_pred HHHHHccCCC
Q 015289 354 AGHLSAGLGC 363 (409)
Q Consensus 354 ~~hlaaa~~~ 363 (409)
.+|||.|+++
T Consensus 241 iaDLAVg~~a 250 (294)
T d2akza1 241 IADLVVGLCT 250 (294)
T ss_dssp HHHHHHHHTC
T ss_pred HhHHHHhcCC
Confidence 6788887764
|
| >d2al1a1 c.1.11.1 (A:142-436) Enolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.08 E-value=3e-10 Score=105.62 Aligned_cols=116 Identities=21% Similarity=0.395 Sum_probs=96.9
Q ss_pred CCHHHHHHHHHH-HHhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEeCC
Q 015289 240 YKPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKL 317 (409)
Q Consensus 240 w~~~~A~~~~~~-L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dE-s~~~~~~~~~~i~~~a~div~~k~ 317 (409)
.|.+|.+++... +++|++ .+||+|++.+||+++.++++ +.++-|..|. .++++..+++.++.++++.+.+|+
T Consensus 132 ~s~~elid~y~~li~~YPI--isIEDp~~e~D~~gw~~lt~----~~g~~iVGDDl~~Tn~~rl~~~i~~~~~nailiK~ 205 (295)
T d2al1a1 132 LTGPQLADLYHSLMKRYPI--VSIEDPFAEDDWEAWSHFFK----TAGIQIVADDLTVTNPKRIATAIEKKAADALLLKV 205 (295)
T ss_dssp BCHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHHHT----TCCSEEEESTTTTTCHHHHHHHHHTTCCSEEEECH
T ss_pred cchHHHHHHHHHHHHhCCE--EEecCCcCccchHHHHHHhh----ccCceeecchhhcccchhhhcchhhhcccceeecc
Confidence 467787777555 578885 59999999999999999985 4677888877 578888999999999999999999
Q ss_pred CCCc-HHHHHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHHccCCC
Q 015289 318 AKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGC 363 (409)
Q Consensus 318 ~~~G-i~~~~~i~~~A~~~gi~~~~~~~~-es~i~~~~~~hlaaa~~~ 363 (409)
.++| ++++++++.+|+++|+.+++++.. ||. -...+|||.++++
T Consensus 206 NQiGTvtEt~ea~~la~~~g~~~ivShRSGETe--D~~iaDLAVg~~a 251 (295)
T d2al1a1 206 NQIGTLSESIKAAQDSFAAGWGVMVSHRSGETE--DTFIADLVVGLRT 251 (295)
T ss_dssp HHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCS--CCHHHHHHHHTTC
T ss_pred cchhhHHHHHHHHHHHHhcCCeeecccCCCCcC--cchhhhhhHhcCC
Confidence 9999 999999999999999999987753 443 3356788888764
|
| >d2fyma1 c.1.11.1 (A:140-431) Enolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=1.7e-09 Score=100.21 Aligned_cols=119 Identities=20% Similarity=0.366 Sum_probs=98.5
Q ss_pred CCCHHHHHHHHHHH-HhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEeC
Q 015289 239 GYKPQEAVEVLEKL-YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 239 ~w~~~~A~~~~~~L-~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dE-s~~~~~~~~~~i~~~a~div~~k 316 (409)
..|.+|.+++...| ++|++ .+||+|+..+||+++.+|++.+. ..+-|..|. .++++.-+++.++.++++.+.+|
T Consensus 127 ~~t~~eli~~y~~l~~~yPI--isIEDP~~edD~~gw~~lt~~~g--~~~~ivGDDL~~Tn~~rl~~gi~~~~~nailiK 202 (292)
T d2fyma1 127 AFTSEEFTHFLEELTKQYPI--VSIEDGLDESDWDGFAYQTKVLG--DKIQLVGDDLFVTNTKILKEGIEKGIANSILIK 202 (292)
T ss_dssp EECHHHHHHHHHHHHHHSCE--EEEESCSCTTCHHHHHHHHHHHT--TTSEEEESTTTTTCHHHHHHHHHTTCCSEEEEC
T ss_pred cccHHHHHHHHHHHHhcCce--EEEeCCcccccHHHHHHHHHhcC--CcEEEeCCchhccChHHHHhhhhcCCccceeec
Confidence 35889988887665 67875 69999999999999999987442 247777776 57788889999999999999999
Q ss_pred CCCCc-HHHHHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHHccCCC
Q 015289 317 LAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGC 363 (409)
Q Consensus 317 ~~~~G-i~~~~~i~~~A~~~gi~~~~~~~~-es~i~~~~~~hlaaa~~~ 363 (409)
+.++| ++++++.+.+|+++|+.+++++.. ||. -.+.+|||.++++
T Consensus 203 ~NQiGTvTet~ea~~la~~~g~~~ivShRSGETe--D~~iaDLAVg~ga 249 (292)
T d2fyma1 203 FNQIGSLTETLAAIKMAKDAGYTAVISHRSGETE--DATIADLAVGTAA 249 (292)
T ss_dssp GGGTCSHHHHHHHHHHHHHTTCEEEEECCSSCCS--CCHHHHHHHHTTC
T ss_pred hhhhhHHHHHHHHHHHHHHcCCeEeecCCCCCcc--cchHHHHHHHhCC
Confidence 99999 999999999999999999987753 443 3356788888864
|
| >d1w6ta1 c.1.11.1 (A:138-433) Enolase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.00 E-value=1.1e-09 Score=101.77 Aligned_cols=117 Identities=19% Similarity=0.351 Sum_probs=97.1
Q ss_pred CHHHHHHHHHHH-HhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEeCCC
Q 015289 241 KPQEAVEVLEKL-YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLA 318 (409)
Q Consensus 241 ~~~~A~~~~~~L-~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dE-s~~~~~~~~~~i~~~a~div~~k~~ 318 (409)
|.+|.+++...| ++|++ .+||+|+..+||+++.+|++.+. ..+-|..|. .++++.-+++.++.++++.+.+|+.
T Consensus 133 s~~elid~y~~l~~~YPI--isIEDP~~e~D~~gw~~lt~~lg--~~~~iVGDDL~vTn~~~l~~gI~~~~~nailiK~N 208 (296)
T d1w6ta1 133 TSAEQIDYLEELVNKYPI--ITIEDGMDENDWDGWKALTERLG--KKVQLVGDDFFVTNTDYLARGIQEGAANSILIKVN 208 (296)
T ss_dssp CHHHHHHHHHHHHHHSCE--EEEESCSCTTCHHHHHHHHHHHT--TTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECHH
T ss_pred CHHHHHHHHHHHHhcCCe--EEEecCcccccHHHHHHHHHHhC--CceEEEcCcccccChhHHHhhhhhcccccceeccc
Confidence 677878876664 78875 69999999999999999987543 357777776 5888888999999999999999999
Q ss_pred CCc-HHHHHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHHccCCC
Q 015289 319 KVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGC 363 (409)
Q Consensus 319 ~~G-i~~~~~i~~~A~~~gi~~~~~~~~-es~i~~~~~~hlaaa~~~ 363 (409)
++| ++++++++.+|+++|+.+++++.. ||. -...+|||.++++
T Consensus 209 QiGTvtet~e~~~~a~~~g~~~ivShRSGETe--D~~iadLAVg~~a 253 (296)
T d1w6ta1 209 QIGTLTETFEAIEMAKEAGYTAVVSHRSGETE--DSTIADIAVATNA 253 (296)
T ss_dssp HHCSHHHHHHHHHHHHHTTCEEEEECCSSCCS--CCHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHHHCCceEEeecCCCCCc--cchhHHHHHHcCC
Confidence 999 999999999999999999987753 443 3356788888864
|
| >d2ptza1 c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Trypanosoma brucei [TaxId: 5691]
Probab=98.97 E-value=1.3e-09 Score=101.38 Aligned_cols=119 Identities=18% Similarity=0.323 Sum_probs=98.1
Q ss_pred CCCHHHHHHHHHHH-HhCCCCCceeecCCCCCCHHHHHHhHHHhhccCCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEeC
Q 015289 239 GYKPQEAVEVLEKL-YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIK 316 (409)
Q Consensus 239 ~w~~~~A~~~~~~L-~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dE-s~~~~~~~~~~i~~~a~div~~k 316 (409)
..|.+|.+++...| ++|++ .+||+|+..+||++++++++.+. -.+-|..|. .++++..+++.++.++++.+.+|
T Consensus 130 ~ls~~elid~y~~l~~~YPI--isIEDp~~e~D~~gw~~lt~~~g--~k~~iVGDDL~vTn~~rl~~gi~~~a~NaiLIK 205 (291)
T d2ptza1 130 WVTAEQLRETYCKWAHDYPI--VSIEDPYDQDDFAGFAGITEALK--GKTQIVGDDLTVTNTERIKMAIEKKACNSLLLK 205 (291)
T ss_dssp EECHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHHHHHTT--TTSEEEESTTTTTCHHHHHHHHHTTCCSEEEEC
T ss_pred hhhHHHHHHHHHHHhhccce--eEecCCccccchhHHHHhhhccC--ceEEEecCcccccchHHHhhccccCCccceEec
Confidence 35889988876665 78885 69999999999999999987432 237777776 58888899999999999999999
Q ss_pred CCCCc-HHHHHHHHHHHHHcCCcEEEccC-CchHHHHHHHHHHHccCCC
Q 015289 317 LAKVG-VLGALEIIEVVRASGLNLMIGGM-VETRLAMGFAGHLSAGLGC 363 (409)
Q Consensus 317 ~~~~G-i~~~~~i~~~A~~~gi~~~~~~~-~es~i~~~~~~hlaaa~~~ 363 (409)
+.++| ++++++.+.+|+++|..+++++. -||. -...+|||.++++
T Consensus 206 ~NQiGTvtEt~ea~~la~~~g~~~iiShRSGETe--D~~iaDLAVg~~a 252 (291)
T d2ptza1 206 INQIGTISEAIASSKLCMENGWSVMVSHRSGETE--DTYIADLVVALGS 252 (291)
T ss_dssp HHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCS--CCHHHHHHHHHTC
T ss_pred chhhhhHHHHHHHHHHHHHcCeeEEeeCCCCCcC--cchHHHHHHHhCC
Confidence 99999 99999999999999999998774 3443 2356788888764
|
| >d1w6ta2 d.54.1.1 (A:1-137) Enolase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.65 E-value=2.9e-07 Score=75.36 Aligned_cols=113 Identities=17% Similarity=0.203 Sum_probs=85.1
Q ss_pred eEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCC----------------ccCcccHHHHHHH
Q 015289 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP----------------HVTAEDQQTAMVK 110 (409)
Q Consensus 47 kI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~----------------~~~~e~~~~~~~~ 110 (409)
+|++|..+.+ -.|+| .+++-|+|.+++|..|.+-++... .|.+-.+..++..
T Consensus 3 ~I~~v~~r~I--------lDSRG----~PTvevev~~~~g~~gra~~PSGAStG~~Ea~elrD~~~~~~~Gkgv~~Av~~ 70 (137)
T d1w6ta2 3 IITDVYAREV--------LDSRG----NPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRYGGLGTQKAVDN 70 (137)
T ss_dssp BEEEEEEEEE--------ECTTS----CEEEEEEEEETTCCEEEEECCCC---CCSSCCCCCCCCTTSGGGTCCHHHHHH
T ss_pred ceeEEEEEEE--------EcCCC----CEEEEEEEEECCCccceeecCcCCCcccccceeccCCccccccCCcHHHHHHH
Confidence 6888888775 24444 489999999999999988876411 1222234566666
Q ss_pred HHH-HHHHHcCCCCCCHHHHHHHHHhhc----CCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCC
Q 015289 111 ASE-ACEVLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171 (409)
Q Consensus 111 ~~~-~~~~l~g~~~~~~~~~~~~~~~~~----~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg 171 (409)
+++ +.|.|+|+++.+.+.+.+.|.+.- ..+..+.++-|+.+|++.+.|+..++|||++|||
T Consensus 71 in~~i~~~L~G~d~~dq~~iD~~lielDgT~nks~lGaNailAvSlA~akAaA~~~~~pLy~yigg 136 (137)
T d1w6ta2 71 VNNIIAEAIIGYDVRDQQAIDRAMIALDGTPNKGKLGANAILGVSIAVARAAADYLEIPLYSYLGG 136 (137)
T ss_dssp HHHTHHHHHTTSBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHHHC
T ss_pred HHHHhHHHHcCCccccHHHHHHHHHHhcCcccccccchhHHHHHHHHHHHHHHHHcCCcHHHhhcC
Confidence 655 689999999999998887775532 1222356789999999999999999999999998
|
| >d2ptza2 d.54.1.1 (A:0-138) Enolase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Trypanosoma brucei [TaxId: 5691]
Probab=98.46 E-value=8.7e-07 Score=72.83 Aligned_cols=112 Identities=15% Similarity=0.173 Sum_probs=82.1
Q ss_pred eeEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCC-----------------ccCcccHHHHH
Q 015289 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP-----------------HVTAEDQQTAM 108 (409)
Q Consensus 46 mkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~-----------------~~~~e~~~~~~ 108 (409)
|+|++|..+.+ -.|+| .+++-|+|.+++|..+ +-+ |.. .|.+..+..++
T Consensus 2 M~I~~i~~r~I--------lDSRG----~PTvevev~~~~g~~r-a~~-PsGaStG~~Ea~elrd~~~~~~~Gkgv~~Av 67 (139)
T d2ptza2 2 MTIQKVHGREV--------LDSRG----NPTVEVEVTTEKGVFR-SAV-PSGASTGVYEACELRDGDKKRYVGKGCLQAV 67 (139)
T ss_dssp TSCCEEEEEEE--------ECTTS----CEEEEEEEEETTEEEE-EEC-CBCSSCCTTSCCCCCCCCTTTGGGTCCHHHH
T ss_pred CeEEEEEEEEE--------EcCCC----CeEEEEEEEECCCcee-Eec-cccccccchhhhhcCCCcccccccchHHHHH
Confidence 89999998875 24544 4899999999998543 433 321 12233445566
Q ss_pred HHHHH-HHHHHcCCCCCCHHHHHHHHHhhcC----CChhhHHHHHHHHHHHHHHHhhcCCchHHHhCC
Q 015289 109 VKASE-ACEVLKESPAMALGSVFGVVAGLLP----GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171 (409)
Q Consensus 109 ~~~~~-~~~~l~g~~~~~~~~~~~~~~~~~~----g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg 171 (409)
..+++ +.|.|+|+++.+.+.+.+.|.+.-. ....+.++-|+.+|++.+.|+..++|||++|++
T Consensus 68 ~nin~~I~~~L~g~~~~dQ~~iD~~li~lDgt~nks~lGaNailAvS~A~akA~A~~~~~pLy~yi~~ 135 (139)
T d2ptza2 68 KNVNEVIGPALIGRDELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISKAAAAAKGVPLYRYLAS 135 (139)
T ss_dssp HHHHHTHHHHHTTCCTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHhhhccchhhcccchhhHHHHHHHHHHHhCCcchhhhhhHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 66654 7899999999999999888765321 122356899999999999999999999999974
|
| >d2fyma2 d.54.1.1 (A:1-139) Enolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Escherichia coli [TaxId: 562]
Probab=98.45 E-value=1.5e-06 Score=71.38 Aligned_cols=113 Identities=19% Similarity=0.196 Sum_probs=85.3
Q ss_pred eEeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccCC----------------ccCcccHHHHHHH
Q 015289 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP----------------HVTAEDQQTAMVK 110 (409)
Q Consensus 47 kI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~~----------------~~~~e~~~~~~~~ 110 (409)
||++|..+.+ -.|.| ++++-|+|.+++|..|.+-++... .|.+..+..++..
T Consensus 2 kI~~v~~r~I--------lDSRG----~PTvevev~~~~g~~g~a~~PsGaStG~~Ea~elrD~~~~~~~Gkgv~~av~~ 69 (139)
T d2fyma2 2 KIVKIIGREI--------IDSRG----NPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAA 69 (139)
T ss_dssp BEEEEEEEEE--------ECTTS----CEEEEEEEEETTSCEEEEECCCCCSSCSSSCCCCCCCCTTSGGGTCCHHHHHH
T ss_pred eeEEEEEEEE--------EcCCC----CeEEEEEEEECCCCEeEEECCcccCccccccccccCCChhhhcccccchhhHH
Confidence 7888888775 24444 489999999999999999887411 1233345566666
Q ss_pred HHH-HHHHHcCCCCCCHHHHHHHHHhhc----CCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCC
Q 015289 111 ASE-ACEVLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171 (409)
Q Consensus 111 ~~~-~~~~l~g~~~~~~~~~~~~~~~~~----~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg 171 (409)
++. +.|.|+|+++.+.+.+.+.|.+.- .....+.++-|+.+|++.+.|+..++|||++|++
T Consensus 70 in~~i~~~Lig~~~~dq~~iD~~li~lDgT~nks~lGaNailAvS~A~akAaA~~~~~pLy~yi~~ 135 (139)
T d2fyma2 70 VNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAE 135 (139)
T ss_dssp HHTHHHHHHTTSBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHhCCchhhhHHHHHHHHhccCCccccccchHHHHHHHHHHHHHHHHHcCCCHHHHhHh
Confidence 664 689999999999998888775431 1122256889999999999999999999999975
|
| >d2al1a2 d.54.1.1 (A:1-141) Enolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.10 E-value=2.2e-05 Score=64.35 Aligned_cols=111 Identities=14% Similarity=0.117 Sum_probs=77.8
Q ss_pred EeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccC--C--------------ccCcccHHHHHHHH
Q 015289 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--P--------------HVTAEDQQTAMVKA 111 (409)
Q Consensus 48 I~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~--~--------------~~~~e~~~~~~~~~ 111 (409)
|++|..+.+ -.|+| .+++-|+|.|++| .|.+-++.. + .|.+..+..++..+
T Consensus 2 I~~v~ar~I--------lDSRG----~PTvev~v~~~~g-~~ra~~PSGaStG~~EA~elrD~~~~~~~gkgV~~av~ni 68 (141)
T d2al1a2 2 VSKVYARSV--------YDSRG----NPTVEVELTTEKG-VFRSIVPSGASTGVHEALEMRDGDKSKWMGKGVLHAVKNV 68 (141)
T ss_dssp CCEEEEEEE--------ECTTS----CEEEEEEEEETTE-EEEEECCBCSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHH
T ss_pred cCEEEEEEE--------ECCCC----CcEEEEEEEECCC-eEEEeeccCCCCCcceeeeecCCCccccccccchhHHHHH
Confidence 566776664 24444 4899999999998 576655421 0 12233345566666
Q ss_pred HH-HHHHHc--CCCCCCHHHHHHHHHhhc----CCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCC
Q 015289 112 SE-ACEVLK--ESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171 (409)
Q Consensus 112 ~~-~~~~l~--g~~~~~~~~~~~~~~~~~----~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg 171 (409)
+. +.|.|+ |.++.+.+.+.+.|.+.- .....+.+.-|+.+|++.+.++..|+|||++|++
T Consensus 69 n~~i~~~Li~~g~~~~dq~~iD~~li~lDgT~nks~lGaNailAvS~A~akAaA~~~~~pLy~yl~~ 135 (141)
T d2al1a2 69 NDVIAPAFVKANIDVKDQKAVDDFLISLDGTANKSKLGANAILGVSLAASRAAAAEKNVPLYKHLAD 135 (141)
T ss_dssp HHTHHHHHHHHTCCTTCHHHHHHHHHHHHCSTTSTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHhHHHHhhcCCchhhHHHHHHHHHHccCCcchhhhhhHHHHHHHHHHHHHHHHHcCCCHHHHHHh
Confidence 64 678887 788889888887775531 1112256889999999999999999999999975
|
| >d1pdza2 d.54.1.1 (A:1-139) Enolase {European lobster (Homarus vulgaris) [TaxId: 6707]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: European lobster (Homarus vulgaris) [TaxId: 6707]
Probab=97.89 E-value=9.2e-05 Score=60.19 Aligned_cols=111 Identities=14% Similarity=0.112 Sum_probs=75.1
Q ss_pred EeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccC--C--------------ccCcccHHHHHHHH
Q 015289 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--P--------------HVTAEDQQTAMVKA 111 (409)
Q Consensus 48 I~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~--~--------------~~~~e~~~~~~~~~ 111 (409)
|++|..+.+ -.|+| .+++-|+|.+++| +|.+-++.. + .|.+-.+..++..+
T Consensus 2 I~~i~ar~I--------lDSRG----~PTVev~v~~~~~-~~ra~~PSGAStG~~EA~elrD~~~~~~~Gkgv~~Av~ni 68 (139)
T d1pdza2 2 ITKVFARTI--------FDSRG----NPTVEVDLYTSKG-LFRAAVPSGASTGVHEALEMRDGDKSKYHGKSVFNAVKNV 68 (139)
T ss_dssp CCEEEEEEE--------ECTTS----CEEEEEEEEETTE-EEEEECCCCBSSCSSSCBCCCCCCTTSGGGTCCHHHHHHH
T ss_pred ccEEEEEEE--------EcCCC----CcEEEEEEEECCC-eEEEecccCcCCcchhheecccCCccccccccccceeecc
Confidence 566666554 24444 4789999999865 465554321 0 12233344566666
Q ss_pred HH-HHHHHc--CCCCCCHHHHHHHHHhhc----CCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCC
Q 015289 112 SE-ACEVLK--ESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171 (409)
Q Consensus 112 ~~-~~~~l~--g~~~~~~~~~~~~~~~~~----~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg 171 (409)
++ +.|.|+ |.++.+.+.+.+.|.+.- .....+.++-|++||++.+.++..|+|||++|++
T Consensus 69 n~~i~~~Li~~g~~~~dq~~iD~~Li~lDgT~nks~lGaNailAvS~A~akAaA~~~~~pLy~yi~~ 135 (139)
T d1pdza2 69 NDVIVPEIIKSGLKVTQQKECDEFMCKLDGTENKSSLGANAILGVSLAICKAGAAELGIPLYRHIAN 135 (139)
T ss_dssp HHTHHHHHHHHTCCTTCHHHHHHHHHHHHCSSSSTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hhhhhHHHHhcCccccchhhhHHHHHhhcCccchhhhhhHHHHHHHHHHHHHHHHHcCCcHHHHhhc
Confidence 54 678887 678888888877765431 1122256889999999999999999999999975
|
| >d2akza2 d.54.1.1 (A:1-139) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Human (Homo sapiens), gamma isoform [TaxId: 9606]
Probab=97.81 E-value=0.00014 Score=59.26 Aligned_cols=111 Identities=14% Similarity=0.107 Sum_probs=76.3
Q ss_pred EeEEEEEEEEecCccceeeccceeeeeeEEEEEEEECCCceEEEEeccC--C--------------ccCcccHHHHHHHH
Q 015289 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--P--------------HVTAEDQQTAMVKA 111 (409)
Q Consensus 48 I~~i~~~~~~~pl~~p~~~a~~~~~~~~~~iVrl~td~G~~G~GE~~~~--~--------------~~~~e~~~~~~~~~ 111 (409)
|++|..+.+ -.|+| .+++-|+|.+++| .|.+-++.. . .|.+..+..++..+
T Consensus 2 I~~i~~r~I--------lDSRG----~PTvevev~~~~g-~~~a~~PsGaStG~~Ea~elrd~~~~~~~gkgV~~Av~~i 68 (139)
T d2akza2 2 IEKIWAREI--------LDSRG----NPTVEVDLYTAKG-LFRAAVPSGASTGIYEALELRDGDKQRYLGKGVLKAVDHI 68 (139)
T ss_dssp CCEEEEEEE--------ECTTS----CEEEEEEEEETTE-EEEEECCBCSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHH
T ss_pred cCEEEEEEE--------EcCCC----CeEEEEEEEECCC-eEEEecccccccchhhhhhccccccccccCCchhhHHHhh
Confidence 566666554 24444 4789999999876 455544321 0 12222345666666
Q ss_pred HH-HHHHHc--CCCCCCHHHHHHHHHhhc----CCChhhHHHHHHHHHHHHHHHhhcCCchHHHhCC
Q 015289 112 SE-ACEVLK--ESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG 171 (409)
Q Consensus 112 ~~-~~~~l~--g~~~~~~~~~~~~~~~~~----~g~~~~~a~said~AlwDl~gk~~g~Pl~~LLGg 171 (409)
+. +.|.|+ |.++.+.+.+.+.|.+.- .....+.++-|+.+|++.+.|+..++|||++|++
T Consensus 69 ~~~i~~~Li~~g~~~~dQ~~iD~~L~~lDgt~nks~lGaNailAvSlA~akA~A~~~~~pLy~yi~~ 135 (139)
T d2akza2 69 NSTIAPALISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAGAAERELPLYRHIAQ 135 (139)
T ss_dssp HHTHHHHHHHHCCCTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHccCccchhhcChHHHHHHHHHHHHHHHHHcCCcHHHHhHh
Confidence 64 788886 899999988888775531 1122256899999999999999999999999864
|
| >d1kcza2 d.54.1.1 (A:1-160) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Probab=97.35 E-value=0.0009 Score=54.25 Aligned_cols=94 Identities=17% Similarity=0.277 Sum_probs=69.8
Q ss_pred eeeEEEEEEEECCCceEEEEeccCC---------ccCcccHHHHHHHHH-HHHHHHcCCCCCCHHHHHHHHHhh-cCCCh
Q 015289 73 QVENVAIRIELSNGCVGWGEAPVLP---------HVTAEDQQTAMVKAS-EACEVLKESPAMALGSVFGVVAGL-LPGHQ 141 (409)
Q Consensus 73 ~~~~~iVrl~td~G~~G~GE~~~~~---------~~~~e~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~-~~g~~ 141 (409)
..+++.|.+..+||.+.||.|...- .+..+ ..+..++ .+.|+|+|++......+...+... ..|..
T Consensus 49 ~gesisV~l~L~dG~va~GDCaaVqySGagGRDPLF~A~---~~i~~~e~~v~p~L~g~d~~~Fr~~a~~~d~~~~~g~~ 125 (160)
T d1kcza2 49 KGESISVLLVLEDGQVAHGDCAAVQYSGAGGRDPLFLAK---DFIPVIEKEIAPKLIGREITNFKPMAEEFDKMTVNGNR 125 (160)
T ss_dssp ECCEEEEEEEETTSCEEEEEECCCTTTTSTTSCSCCCHH---HHHHHHHHHTHHHHTTCBCCCHHHHHHHHHHCEETTEE
T ss_pred cCcEEEEEEEeCCCCEEEeeehheeecCCCCCCccccHH---HHHHHHHHhhhHHHhCCcHHHHHHHHHHHhhcccCCcc
Confidence 4678999999999999999998632 22222 2233333 478999999999998888887653 22322
Q ss_pred -hhHHHHHHHHHHHHHHHhhcCCchHHHh
Q 015289 142 -FASVRAAVEMALIDAVAKSVSMPLWRLF 169 (409)
Q Consensus 142 -~~~a~said~AlwDl~gk~~g~Pl~~LL 169 (409)
..+.+.+|..||+|+.++..+.-..+.+
T Consensus 126 LHtAiRYGvSQALL~A~A~a~r~tmaeVi 154 (160)
T d1kcza2 126 LHTAIRYGITQAILDAVAKTRKVTMAEVI 154 (160)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hhHHHHHhHHHHHHHHHHHHcCCcHHHHh
Confidence 2468999999999999999887766654
|
| >d1kkoa2 d.54.1.1 (A:1-160) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Probab=97.29 E-value=0.0011 Score=53.65 Aligned_cols=94 Identities=21% Similarity=0.203 Sum_probs=69.0
Q ss_pred eeeEEEEEEEECCCceEEEEeccCC---------ccCcccHHHHHHHHH-HHHHHHcCCCCCCHHHHHHHHHhh-cCCCh
Q 015289 73 QVENVAIRIELSNGCVGWGEAPVLP---------HVTAEDQQTAMVKAS-EACEVLKESPAMALGSVFGVVAGL-LPGHQ 141 (409)
Q Consensus 73 ~~~~~iVrl~td~G~~G~GE~~~~~---------~~~~e~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~-~~g~~ 141 (409)
..+++.|.+..+||.+.||.|...- .+..+ ..+..++ .+.|+|+|++..........+... +.|..
T Consensus 49 ~gesisV~l~L~dG~va~GDCaaVqySGagGRDPLF~A~---~~i~~~e~~v~p~L~g~d~~~Fr~~A~~~d~~~~~g~~ 125 (160)
T d1kkoa2 49 AGECVSVQLILENGAVAVGDCAAVQYSGAGGRDPLFLAE---HFIPFLNDHIKPLLEGRDVDAFLPNARFFDKLRIDGNL 125 (160)
T ss_dssp EEEEEEEEEEETTSCEEEEEECCCTTTTSTTCCCCCCHH---HHHHHHHHHTHHHHTTCBCSCSHHHHHHHHHCEETTEE
T ss_pred cCcEEEEEEEeCCCCEEEeeehheeecCCCCCCccccHH---HHHHHHHHhhhHHHhCCcHHHHHHHHHHHhhcccCCCc
Confidence 4678999999999999999998632 22222 2233333 478999999999988877777643 22222
Q ss_pred -hhHHHHHHHHHHHHHHHhhcCCchHHHh
Q 015289 142 -FASVRAAVEMALIDAVAKSVSMPLWRLF 169 (409)
Q Consensus 142 -~~~a~said~AlwDl~gk~~g~Pl~~LL 169 (409)
..+.+.+|..||+|+.++..+.-..+.+
T Consensus 126 LHtAiRYGvSQALL~A~A~a~r~tmaeVi 154 (160)
T d1kkoa2 126 LHTAVRYGLSQALLDATALASGRLKTEVV 154 (160)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred hhHHHHHhHHHHHHHHHHHHcCccHHHHH
Confidence 2468999999999999999887766654
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=0.0089 Score=55.39 Aligned_cols=124 Identities=21% Similarity=0.302 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHcCCCeEEEecCC---------------------Ch----hHHHHHHHHHHhh-CCCcEE--EEeC----
Q 015289 189 EAAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDSSF--ILDA---- 236 (409)
Q Consensus 189 ~~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~d~~~l~avr~~-~~~~~l--~vDa---- 236 (409)
+.++.|+.+.+.||..|-|+.+. ++ +--++.+++||++ ++++.+ ++-+
T Consensus 142 ~f~~aA~ra~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eii~air~~vg~d~~v~~R~s~~d~~ 221 (330)
T d1ps9a1 142 NFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLV 221 (330)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCS
T ss_pred HHHHHHHHHHHhCcCeeeeccchHHHHHHHHHhhcccccccCCccHhhhhHHHHHHHHHHHHHcCCCceeEecccccccc
Confidence 34566777888999999999751 12 2346788899997 777543 3322
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCc-----eeec-------CCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHH
Q 015289 237 NEGYKPQEAVEVLEKLYEMGVTPV-----LFEQ-------PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 304 (409)
Q Consensus 237 N~~w~~~~A~~~~~~L~~~~l~~~-----~iEe-------P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~ 304 (409)
..+++.++++++++.|++.++... |.|. |.+...+ ..+++.+++.+++||...=.+++++...++
T Consensus 222 ~~g~~~~~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~ 298 (330)
T d1ps9a1 222 EDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAF---SWVTRKLKGHVSLPLVTTNRINDPQVADDI 298 (330)
T ss_dssp TTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTT---HHHHHHHTTSCSSCEEECSSCCSHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHhhhhhhhcccccccccccccCCCCcchhH---HHHHHHHHhhCCceEEEeCCCCCHHHHHHH
Confidence 467899999999999998765310 2222 2222222 233333456788999998889999999999
Q ss_pred HHcCCCCEEEe
Q 015289 305 VKGNLADVINI 315 (409)
Q Consensus 305 i~~~a~div~~ 315 (409)
++.|.+|.|.+
T Consensus 299 l~~g~~D~V~~ 309 (330)
T d1ps9a1 299 LSRGDADMVSM 309 (330)
T ss_dssp HHTTSCSEEEE
T ss_pred HHCCCcchhHh
Confidence 99999999854
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=96.65 E-value=0.026 Score=52.30 Aligned_cols=122 Identities=16% Similarity=0.202 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHcCCCeEEEecCC---------------------Ch----hHHHHHHHHHHhh-CCCcEEEEeCC----C
Q 015289 189 EAAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDSSFILDAN----E 238 (409)
Q Consensus 189 ~~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~d~~~l~avr~~-~~~~~l~vDaN----~ 238 (409)
+.++.|+.+++.||..+.|+.+. ++ +--.+.+++||++ ...+.+++-++ +
T Consensus 144 ~f~~AA~ra~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv~air~~~~~~~~vr~~~~~~~~~ 223 (337)
T d1z41a1 144 EFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDK 223 (337)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTT
T ss_pred HHHHHHHHHHHcCCCeEEeeccCcceeeeecCCccccccccccchhhhhhhHHHHHHHHHhhhhcccceEEecccccccC
Confidence 34556677788999999999751 12 2346778999997 45666666654 4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCcee-------ecC---CCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcC
Q 015289 239 GYKPQEAVEVLEKLYEMGVTPVLF-------EQP---VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 308 (409)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~i-------EeP---~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~ 308 (409)
+++.++.+++++.|++.++. ++ ++| ..+.-. ..+.+..|+.+++||..-=.+.+++...++++.|
T Consensus 224 g~~~~~~~~~~~~l~~~g~d--~~~~s~g~~~~~~~~~~~~~~---~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g 298 (337)
T d1z41a1 224 GLDIADHIGFAKWMKEQGVD--LIDCSSGALVHADINVFPGYQ---VSFAEKIREQADMATGAVGMITDGSMAEEILQNG 298 (337)
T ss_dssp SCCHHHHHHHHHHHHHTTCC--EEEEECCCSSCCCCCCCTTTT---HHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTT
T ss_pred ccchhhhHHHHHHHHHcCCc--ccccccccccccccccCCccc---HHHHHHHHHhcCceEEEeCCcCCHHHHHHHHHCC
Confidence 67899999999999998764 32 222 111111 1222223456789999888889999999999999
Q ss_pred CCCEEEe
Q 015289 309 LADVINI 315 (409)
Q Consensus 309 a~div~~ 315 (409)
.+|.|.+
T Consensus 299 ~~D~V~~ 305 (337)
T d1z41a1 299 RADLIFI 305 (337)
T ss_dssp SCSEEEE
T ss_pred Ccceehh
Confidence 9998744
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=96.39 E-value=0.016 Score=52.89 Aligned_cols=138 Identities=20% Similarity=0.324 Sum_probs=99.8
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHHcCCCeEEEecC----------------CChhHHHHHHHHHHhhCCCcEEEEeCCCC
Q 015289 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG----------------KNLKEDIEVLRAIRAVHPDSSFILDANEG 239 (409)
Q Consensus 176 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG----------------~~~~~d~~~l~avr~~~~~~~l~vDaN~~ 239 (409)
-|+...+...+|+++.+.+ +.++.||..|-+.+| .+++.-.+.++++++.. ++.+.+=..-+
T Consensus 55 ~p~~~Ql~g~~p~~~~~aa-~~~~~~~~~IdlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~-~~pvsvK~RlG 132 (305)
T d1vhna_ 55 RNVAVQIFGSEPNELSEAA-RILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSV-SGKFSVKTRLG 132 (305)
T ss_dssp TTEEEEEECSCHHHHHHHH-HHHTTTCSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHC-SSEEEEEEESC
T ss_pred CCeEEEEeccchhhhhhhh-hhhhhheeeeeEEEEecchhhcccccceeeccCHHHHHHHhhhhhhhc-ccccccccccC
Confidence 3566677778999887755 567789999999988 24566667788888764 34555555566
Q ss_pred CCHHHHHHHHHHHHhCCCCCcee-----ecCC-CCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEE
Q 015289 240 YKPQEAVEVLEKLYEMGVTPVLF-----EQPV-HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 313 (409)
Q Consensus 240 w~~~~A~~~~~~L~~~~l~~~~i-----EeP~-~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div 313 (409)
|+.++..++++.+++.|+....| .|.. .+-||+..+++. ..+||...=.+.+..|+.++++.-.+|.|
T Consensus 133 ~d~~~~~~~~~~l~~~G~~~itvH~Rt~~q~~~~~a~~~~i~~~~------~~ipvi~NGdI~s~~d~~~~l~~tg~dgV 206 (305)
T d1vhna_ 133 WEKNEVEEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLE------KRIPTFVSGDIFTPEDAKRALEESGCDGL 206 (305)
T ss_dssp SSSCCHHHHHHHHHHTTCCEEEEESSCTTTTTSSCCCGGGGGGSC------CSSCEEEESSCCSHHHHHHHHHHHCCSEE
T ss_pred cccchhhHHHHHHHHhCCcEEEechhhhhhccccchhhhHHHhhh------hhhhhhcccccccHHHHHHHHHhcCCCeE
Confidence 77666778999999998752222 3333 244677666653 36999999999999999999987568999
Q ss_pred EeCCCCCc
Q 015289 314 NIKLAKVG 321 (409)
Q Consensus 314 ~~k~~~~G 321 (409)
++=-+-.|
T Consensus 207 MiGRgal~ 214 (305)
T d1vhna_ 207 LVARGAIG 214 (305)
T ss_dssp EESGGGTT
T ss_pred ehhHHHHH
Confidence 88655444
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=94.89 E-value=0.14 Score=47.50 Aligned_cols=119 Identities=14% Similarity=0.275 Sum_probs=81.5
Q ss_pred HHHHHHHHHHcCCCeEEEecCC---------------------Ch----hHHHHHHHHHHhh-CCC-cEEEEeC------
Q 015289 190 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPD-SSFILDA------ 236 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~d~~~l~avr~~-~~~-~~l~vDa------ 236 (409)
.++.|+++++.||..|-|+.+. ++ +--.|.+++||+. +++ +.+++-.
T Consensus 162 f~~AA~rA~~aGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~~g~d~i~~r~s~~~~~~~ 241 (363)
T d1vyra_ 162 FRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQN 241 (363)
T ss_dssp HHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTT
T ss_pred HHHHHHHHHHhccceeeecccCceeeeeeecCcccccccccccchhhhhHhHHHHHhhhhhhcCCCCcceeecccccccc
Confidence 4566778888999999999751 12 2456788999997 555 3345532
Q ss_pred --CCCCCHHHHHHHHHHHHhCCCCCceeecCCC------CCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcC
Q 015289 237 --NEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 308 (409)
Q Consensus 237 --N~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~------~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~ 308 (409)
.++++.++++++++.|++.++. |++=-.. +.. ..+++. .+..+++||+.+= ..+++...++++.|
T Consensus 242 ~~~gg~~~~e~~~~~~~l~~~gvd--~i~vs~~~~~~~~~~~-~~~~~~---~~~~~~~~vi~~G-~~t~~~ae~~l~~G 314 (363)
T d1vyra_ 242 VDNGPNEEADALYLIEELAKRGIA--YLHMSETDLAGGKPYS-EAFRQK---VRERFHGVIIGAG-AYTAEKAEDLIGKG 314 (363)
T ss_dssp BCCCTTHHHHHHHHHHHHHHTTCS--EEEEECCBTTBCCCCC-HHHHHH---HHHHCCSEEEEES-SCCHHHHHHHHHTT
T ss_pred hhhcccchHHHHHHHHHHHhcCCe--eeecccCCccCCcccc-HHHHHH---HHHhcCceEEecC-CCCHHHHHHHHHCC
Confidence 2467789999999999999874 6542111 112 223332 2346778888765 45899999999999
Q ss_pred CCCEEEe
Q 015289 309 LADVINI 315 (409)
Q Consensus 309 a~div~~ 315 (409)
.+|.|-+
T Consensus 315 ~~DlV~~ 321 (363)
T d1vyra_ 315 LIDAVAF 321 (363)
T ss_dssp SCSEEEE
T ss_pred Ccceehh
Confidence 9999843
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.88 E-value=0.46 Score=43.39 Aligned_cols=126 Identities=13% Similarity=0.086 Sum_probs=74.0
Q ss_pred HHHHHHHHHHcCCCeEEEecCC---------------------Ch----hHHHHHHHHHHhh-CCCc--EEEEeCC---C
Q 015289 190 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDS--SFILDAN---E 238 (409)
Q Consensus 190 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~d~~~l~avr~~-~~~~--~l~vDaN---~ 238 (409)
.++.++.+++.||..|-|+.+. ++ +--++.+++||++ ++++ .+++=++ +
T Consensus 151 f~~aA~~a~~aGfDgVEih~ahGyLl~qFls~~~N~R~D~yGGs~enR~Rf~~EIi~aIr~~vg~~~~i~~R~s~~~~~~ 230 (340)
T d1djqa1 151 YVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYG 230 (340)
T ss_dssp HHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSSC
T ss_pred HHHHHHHHHHhccceeeeeccccchhhhhhhhccccccccccccHHhhhHHHHHHHHHHHHHHhhhhhceeecccccccc
Confidence 4556677788999999999751 12 2345778999997 7774 3343222 2
Q ss_pred --CCCHHHHHHHHHHHHhCCCCC---------ceeecCCCCCCH--HHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHH
Q 015289 239 --GYKPQEAVEVLEKLYEMGVTP---------VLFEQPVHRDDW--EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIV 305 (409)
Q Consensus 239 --~w~~~~A~~~~~~L~~~~l~~---------~~iEeP~~~~d~--~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i 305 (409)
..+.+.....+..+.+.++.. .|.+++-+.... .....+++..|...++||..-=.+.++++..+++
T Consensus 231 ~~~~~~e~~~~~~~~l~~~~vd~~~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~G~i~~~~~a~~~l 310 (340)
T d1djqa1 231 PGQIEAEVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIV 310 (340)
T ss_dssp TTSCCTTTHHHHHHHHHTTTCSEEEEEESCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTCSSCEEECSCCCCHHHHHHHH
T ss_pred CCCCchhhhHHHHHHHHhhccceeeeeecccccccccccccccCCccccHHHHHHHHHHcCCeEEEECCCCCHHHHHHHH
Confidence 122332233444555544321 122333222110 0011222233457889999877899999999999
Q ss_pred HcCCCCEEEe
Q 015289 306 KGNLADVINI 315 (409)
Q Consensus 306 ~~~a~div~~ 315 (409)
+.|.+|.|-+
T Consensus 311 ~~G~aDlV~~ 320 (340)
T d1djqa1 311 TKGYADIIGC 320 (340)
T ss_dssp HTTSCSBEEE
T ss_pred HCCCccchhh
Confidence 9999999743
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=93.45 E-value=0.29 Score=41.76 Aligned_cols=97 Identities=9% Similarity=0.137 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHhCCCCCceeecCCCCCC-HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC
Q 015289 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 319 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~ 319 (409)
+.+++.++++.|-+.|+. .||=.+...+ ++.++++++ +..++-|.+| ++.+.++++++++.|+ +++.- |..
T Consensus 24 ~~~~~~~~~~al~~~Gi~--~iEitl~~~~a~~~I~~l~~---~~p~~~vGaG-TV~~~~~~~~a~~aGa-~FivS-P~~ 95 (212)
T d1vhca_ 24 NADDILPLADTLAKNGLS--VAEITFRSEAAADAIRLLRA---NRPDFLIAAG-TVLTAEQVVLAKSSGA-DFVVT-PGL 95 (212)
T ss_dssp SGGGHHHHHHHHHHTTCC--EEEEETTSTTHHHHHHHHHH---HCTTCEEEEE-SCCSHHHHHHHHHHTC-SEEEC-SSC
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCChhHHHHHHHHHh---cCCCceEeee-ecccHHHHHHHHhhCC-cEEEC-CCC
Confidence 578899999999999986 9999998654 333444433 2345666665 7889999999999985 77632 222
Q ss_pred CcHHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 015289 320 VGVLGALEIIEVVRASGLNLMIGGMVETRLA 350 (409)
Q Consensus 320 ~Gi~~~~~i~~~A~~~gi~~~~~~~~es~i~ 350 (409)
. ..+++.|++++++++||++.-|.+-
T Consensus 96 ~-----~~v~~~a~~~~i~~iPGv~TpsEi~ 121 (212)
T d1vhca_ 96 N-----PKIVKLCQDLNFPITPGVNNPMAIE 121 (212)
T ss_dssp C-----HHHHHHHHHTTCCEECEECSHHHHH
T ss_pred C-----HHHHHHHHhcCCCccCCcCCHHHHH
Confidence 1 5788999999999999998655543
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=92.69 E-value=0.43 Score=40.68 Aligned_cols=97 Identities=11% Similarity=0.138 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHhCCCCCceeecCCCCCC-HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC
Q 015289 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 319 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~ 319 (409)
+.+++...++.|-+.|+. .||=++...+ ++.++++++ +.-++-|.+| ++.+.++++++++.|+ +++.---..
T Consensus 25 ~~~~a~~~~~al~~~Gi~--~iEitl~tp~a~~~I~~l~~---~~p~~~vGaG-TV~~~~~~~~a~~aGa-~FivSP~~~ 97 (213)
T d1wbha1 25 KLEHAVPMAKALVAGGVR--VLNVTLRTECAVDAIRAIAK---EVPEAIVGAG-TVLNPQQLAEVTEAGA-QFAISPGLT 97 (213)
T ss_dssp SGGGHHHHHHHHHHTTCC--EEEEESCSTTHHHHHHHHHH---HCTTSEEEEE-SCCSHHHHHHHHHHTC-SCEEESSCC
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCChhHHHHHHHHHH---HCCCCeeecc-ccccHHHHHHHHHCCC-cEEECCCCC
Confidence 788999999999999986 9999997554 344445543 2345655554 7899999999999995 665321111
Q ss_pred CcHHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 015289 320 VGVLGALEIIEVVRASGLNLMIGGMVETRLA 350 (409)
Q Consensus 320 ~Gi~~~~~i~~~A~~~gi~~~~~~~~es~i~ 350 (409)
..+++.|+++|++++||++.-|.+-
T Consensus 98 ------~~v~~~a~~~~i~~iPGv~TpsEi~ 122 (213)
T d1wbha1 98 ------EPLLKAATEGTIPLIPGISTVSELM 122 (213)
T ss_dssp ------HHHHHHHHHSSSCEEEEESSHHHHH
T ss_pred ------HHHHHHHHhcCCCccCCcCCHHHHH
Confidence 5778999999999999998765543
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=90.87 E-value=0.59 Score=39.82 Aligned_cols=97 Identities=10% Similarity=0.150 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHhCCCCCceeecCCCCCC-HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC
Q 015289 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 319 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~ 319 (409)
+.+++++.++.|-+.|+. .||=++...+ ++.++.+++ +.-++-|.+| ++.+.++++++++.|+ +++.- |+.
T Consensus 27 ~~~~a~~~~~al~~~Gi~--~iEitl~~p~a~~~i~~l~~---~~p~~~vGaG-TV~~~~~~~~a~~aGa-~Fivs-P~~ 98 (216)
T d1mxsa_ 27 REEDILPLADALAAGGIR--TLEVTLRSQHGLKAIQVLRE---QRPELCVGAG-TVLDRSMFAAVEAAGA-QFVVT-PGI 98 (216)
T ss_dssp CGGGHHHHHHHHHHTTCC--EEEEESSSTHHHHHHHHHHH---HCTTSEEEEE-CCCSHHHHHHHHHHTC-SSEEC-SSC
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCChhHHHHHHHHHH---hCCCcceeee-eeecHHHHHHHHhCCC-CEEEC-CCC
Confidence 578999999999999987 9999987543 333343433 2335666665 7889999999999996 66532 221
Q ss_pred CcHHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 015289 320 VGVLGALEIIEVVRASGLNLMIGGMVETRLA 350 (409)
Q Consensus 320 ~Gi~~~~~i~~~A~~~gi~~~~~~~~es~i~ 350 (409)
. ..+++.|+++|++++||++.-|.+-
T Consensus 99 ~-----~~v~~~a~~~~i~~iPGv~TpsEi~ 124 (216)
T d1mxsa_ 99 T-----EDILEAGVDSEIPLLPGISTPSEIM 124 (216)
T ss_dssp C-----HHHHHHHHHCSSCEECEECSHHHHH
T ss_pred c-----HHHHHHHHhcCCCccCCcCCHHHHH
Confidence 1 5778999999999999998755543
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=89.95 E-value=1.1 Score=41.17 Aligned_cols=123 Identities=16% Similarity=0.240 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHcCCCeEEEecCC---------------------Ch----hHHHHHHHHHHhh-CCCc-EEEEeC----C
Q 015289 189 EAAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDS-SFILDA----N 237 (409)
Q Consensus 189 ~~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~d~~~l~avr~~-~~~~-~l~vDa----N 237 (409)
+.++.|+++++.||..|-|+.+. ++ +--++.+++||++ +++. .+++-. +
T Consensus 164 ~f~~AA~rA~~AGfDgVEIH~ahGYLl~qFLSp~~N~RtDeYGGSlENR~Rf~~EIi~aIR~~vg~~~v~~r~~~~~~~~ 243 (374)
T d1gwja_ 164 DYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELF 243 (374)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCCT
T ss_pred HHHHHHHHHHHhCCCEEEeccchhhhHHHHHHhhcCccccccccchhhhhhhHHHHHHHHHHHcCCcceeeeeeeecccc
Confidence 34666778888999999999751 11 2346789999997 6664 333322 1
Q ss_pred C-CC--CHHHHHHHHHHHHhCCCCCceeecCCCC----CCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCC
Q 015289 238 E-GY--KPQEAVEVLEKLYEMGVTPVLFEQPVHR----DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA 310 (409)
Q Consensus 238 ~-~w--~~~~A~~~~~~L~~~~l~~~~iEeP~~~----~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~ 310 (409)
+ .. ....+......|+..++....+.+|-.. ....++.+ .+++.+++||..--.+ ++....++++.|.+
T Consensus 244 g~~~~~~~~~~~~~~~~ld~~~i~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~pvi~~G~i-~~~~ae~~l~~g~a 319 (374)
T d1gwja_ 244 GLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDITYPEGFRE---QMRQRFKGGLIYCGNY-DAGRAQARLDDNTA 319 (374)
T ss_dssp TCCCSCHHHHHHHHHHHHHHHTCSEEEEECSCBTTBCCCCCTTHHH---HHHHHCCSEEEEESSC-CHHHHHHHHHTTSC
T ss_pred CCcccchHHHHHHhhccccccCceEEEeccCcccCCCcchhHHHHH---HHHHHcCCCEEEECCc-CHHHHHHHHHcCCC
Confidence 1 11 2334556677788777653345555321 11122322 1234678999877666 78889999999999
Q ss_pred CEEEe
Q 015289 311 DVINI 315 (409)
Q Consensus 311 div~~ 315 (409)
|.|-+
T Consensus 320 DlV~~ 324 (374)
T d1gwja_ 320 DAVAF 324 (374)
T ss_dssp SEEEE
T ss_pred cEehh
Confidence 99843
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=88.84 E-value=3.9 Score=34.37 Aligned_cols=142 Identities=18% Similarity=0.214 Sum_probs=100.8
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCce
Q 015289 182 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261 (409)
Q Consensus 182 i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~ 261 (409)
+...++++..+.++.+.+.|++.+.+-... ..-.+.++.+++.+|++ .+=+..-.|.+|+.+. .+.|.+ |
T Consensus 21 lr~~~~~~a~~~~~al~~~Gi~~iEitl~t--p~a~~~I~~l~~~~p~~--~vGaGTV~~~~~~~~a----~~aGa~--F 90 (213)
T d1wbha1 21 IVVKKLEHAVPMAKALVAGGVRVLNVTLRT--ECAVDAIRAIAKEVPEA--IVGAGTVLNPQQLAEV----TEAGAQ--F 90 (213)
T ss_dssp ECCSSGGGHHHHHHHHHHTTCCEEEEESCS--TTHHHHHHHHHHHCTTS--EEEEESCCSHHHHHHH----HHHTCS--C
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEeCCC--hhHHHHHHHHHHHCCCC--eeeccccccHHHHHHH----HHCCCc--E
Confidence 345678888899999999999999999853 34578888899988884 5678888999887444 445654 7
Q ss_pred eecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-CcHHHHH-HHHHHHHHcCCcE
Q 015289 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGAL-EIIEVVRASGLNL 339 (409)
Q Consensus 262 iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~-~Gi~~~~-~i~~~A~~~gi~~ 339 (409)
+=-|.-..++ ++. ++ +.++|..-| +.++.++..+++.| ++++.+=|.. .|....+ .+.... -++++
T Consensus 91 ivSP~~~~~v--~~~-a~----~~~i~~iPG--v~TpsEi~~A~~~G-~~~vKlFPA~~~Gg~~~lkal~~p~--p~~~~ 158 (213)
T d1wbha1 91 AISPGLTEPL--LKA-AT----EGTIPLIPG--ISTVSELMLGMDYG-LKEFKFFPAEANGGVKALQAIAGPF--SQVRF 158 (213)
T ss_dssp EEESSCCHHH--HHH-HH----HSSSCEEEE--ESSHHHHHHHHHTT-CCEEEETTTTTTTHHHHHHHHHTTC--TTCEE
T ss_pred EECCCCCHHH--HHH-HH----hcCCCccCC--cCCHHHHHHHHHCC-CCEEEeccchhcChHHHHHHhcCcc--cCCce
Confidence 7778754332 332 22 457888873 78999999999988 6999888875 5743333 333332 36788
Q ss_pred EEccCC
Q 015289 340 MIGGMV 345 (409)
Q Consensus 340 ~~~~~~ 345 (409)
++.+-+
T Consensus 159 ~ptGGV 164 (213)
T d1wbha1 159 CPTGGI 164 (213)
T ss_dssp EEBSSC
T ss_pred eeeCCC
Confidence 885543
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=87.92 E-value=2.6 Score=35.63 Aligned_cols=141 Identities=13% Similarity=0.173 Sum_probs=99.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCcee
Q 015289 183 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 262 (409)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i 262 (409)
...++++..+.++.+.+.|++.+.+-... ..-.+.++.+|+.+|+ +.+=+..-.|.+|+.+. .+.|.. |+
T Consensus 24 ~~~~~~~a~~~~~al~~~Gi~~iEitl~~--p~a~~~i~~l~~~~p~--~~vGaGTV~~~~~~~~a----~~aGa~--Fi 93 (216)
T d1mxsa_ 24 TIAREEDILPLADALAAGGIRTLEVTLRS--QHGLKAIQVLREQRPE--LCVGAGTVLDRSMFAAV----EAAGAQ--FV 93 (216)
T ss_dssp CCSCGGGHHHHHHHHHHTTCCEEEEESSS--THHHHHHHHHHHHCTT--SEEEEECCCSHHHHHHH----HHHTCS--SE
T ss_pred ECCCHHHHHHHHHHHHHCCCCEEEEeCCC--hhHHHHHHHHHHhCCC--cceeeeeeecHHHHHHH----HhCCCC--EE
Confidence 34578888888999999999999998853 3557889999998887 56778888999886544 345654 77
Q ss_pred ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-CcHHHHHH-HHHHHHHcCCcEE
Q 015289 263 EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALE-IIEVVRASGLNLM 340 (409)
Q Consensus 263 EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~-~Gi~~~~~-i~~~A~~~gi~~~ 340 (409)
=-|.-..++ + +.++ +.++|..- -+.++.++..+++.| ++++.+=|.- .|....++ +...- -+++++
T Consensus 94 vsP~~~~~v--~-~~a~----~~~i~~iP--Gv~TpsEi~~A~~~G-~~~vKlFPA~~~~g~~~ikal~~p~--p~~~fi 161 (216)
T d1mxsa_ 94 VTPGITEDI--L-EAGV----DSEIPLLP--GISTPSEIMMGYALG-YRRFKLFPAEISGGVAAIKAFGGPF--GDIRFC 161 (216)
T ss_dssp ECSSCCHHH--H-HHHH----HCSSCEEC--EECSHHHHHHHHTTT-CCEEEETTHHHHTHHHHHHHHHTTT--TTCEEE
T ss_pred ECCCCcHHH--H-HHHH----hcCCCccC--CcCCHHHHHHHHHCC-CCEEEeccccccccHHHHHHHhccc--ccCcee
Confidence 778754333 2 2222 46788887 378999999999988 6999888874 45333333 33322 368888
Q ss_pred EccCC
Q 015289 341 IGGMV 345 (409)
Q Consensus 341 ~~~~~ 345 (409)
+.+-+
T Consensus 162 ptGGV 166 (216)
T d1mxsa_ 162 PTGGV 166 (216)
T ss_dssp EBSSC
T ss_pred ccCCC
Confidence 85543
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=87.31 E-value=6.3 Score=32.94 Aligned_cols=141 Identities=14% Similarity=0.246 Sum_probs=99.2
Q ss_pred cCCCHHHHHHHHHHHHHcCCCeEEEecCCChhHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCCcee
Q 015289 183 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 262 (409)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~d~~~l~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i 262 (409)
...+.++..+.++.+.+.|++.+.+-+.. ..-.+.++++++.+|+ +.+=+..-.|.+++.+. .+.|.+ |+
T Consensus 21 r~~~~~~~~~~~~al~~~Gi~~iEitl~~--~~a~~~I~~l~~~~p~--~~vGaGTV~~~~~~~~a----~~aGa~--Fi 90 (212)
T d1vhca_ 21 ALDNADDILPLADTLAKNGLSVAEITFRS--EAAADAIRLLRANRPD--FLIAAGTVLTAEQVVLA----KSSGAD--FV 90 (212)
T ss_dssp CCSSGGGHHHHHHHHHHTTCCEEEEETTS--TTHHHHHHHHHHHCTT--CEEEEESCCSHHHHHHH----HHHTCS--EE
T ss_pred eCCCHHHHHHHHHHHHHCCCCEEEEeCCC--hhHHHHHHHHHhcCCC--ceEeeeecccHHHHHHH----HhhCCc--EE
Confidence 34567788888888899999999999853 3456778888888887 66778888999887554 346654 88
Q ss_pred ecCCCCCCHHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-Cc-HHHHHHHHHHHHHcCCcEE
Q 015289 263 EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VG-VLGALEIIEVVRASGLNLM 340 (409)
Q Consensus 263 EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~-~G-i~~~~~i~~~A~~~gi~~~ 340 (409)
=-|.-..+ +-+.++ +.++|..- -+.++.++..+.+.| ++++.+=|.. +| +.-...+...- -+++++
T Consensus 91 vSP~~~~~---v~~~a~----~~~i~~iP--Gv~TpsEi~~A~~~G-~~~vK~FPA~~~gG~~~lkal~~p~--p~~~~~ 158 (212)
T d1vhca_ 91 VTPGLNPK---IVKLCQ----DLNFPITP--GVNNPMAIEIALEMG-ISAVKFFPAEASGGVKMIKALLGPY--AQLQIM 158 (212)
T ss_dssp ECSSCCHH---HHHHHH----HTTCCEEC--EECSHHHHHHHHHTT-CCEEEETTTTTTTHHHHHHHHHTTT--TTCEEE
T ss_pred ECCCCCHH---HHHHHH----hcCCCccC--CcCCHHHHHHHHHCC-CCEEEEccccccchHHHHHHHhccc--cCCeEE
Confidence 77875333 333332 45888886 478999999999988 6999988874 65 33333333221 268899
Q ss_pred EccCC
Q 015289 341 IGGMV 345 (409)
Q Consensus 341 ~~~~~ 345 (409)
+.+-+
T Consensus 159 ptGGV 163 (212)
T d1vhca_ 159 PTGGI 163 (212)
T ss_dssp EBSSC
T ss_pred ecCCC
Confidence 86543
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=85.72 E-value=2 Score=35.87 Aligned_cols=98 Identities=24% Similarity=0.282 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHhCCCCCceeecCCCCCC-HHHHHHhHHHhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC
Q 015289 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 319 (409)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~div~~k~~~ 319 (409)
+.+++...++.|-+.|+. ++|=++...+ ++.++++++. ...++-|.+| ++.+.++++++++.|+ +++. -|
T Consensus 19 ~~~~a~~~~~al~~~Gi~--~iEitlr~p~a~~~i~~l~~~--~~~~~~vGaG-TV~~~~~~~~a~~aGa-~fiv-sP-- 89 (202)
T d1wa3a1 19 SVEEAKEKALAVFEGGVH--LIEITFTVPDADTVIKELSFL--KEKGAIIGAG-TVTSVEQCRKAVESGA-EFIV-SP-- 89 (202)
T ss_dssp SHHHHHHHHHHHHHTTCC--EEEEETTSTTHHHHHHHTHHH--HHTTCEEEEE-SCCSHHHHHHHHHHTC-SEEE-CS--
T ss_pred CHHHHHHHHHHHHHcCCC--EEEEecCCccHHHHHHHHHHh--cCCCcEEEec-ccccHHHHHHHHhhcc-cEEe-CC--
Confidence 689999999999999986 9998888554 3444555431 1234555444 7889999999999985 7653 22
Q ss_pred CcHHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 015289 320 VGVLGALEIIEVVRASGLNLMIGGMVETRLA 350 (409)
Q Consensus 320 ~Gi~~~~~i~~~A~~~gi~~~~~~~~es~i~ 350 (409)
|+. ..+++.|.++|+++.+|.+.-|.+-
T Consensus 90 -~~~--~~v~~~~~~~~i~~iPGv~TpsEi~ 117 (202)
T d1wa3a1 90 -HLD--EEISQFCKEKGVFYMPGVMTPTELV 117 (202)
T ss_dssp -SCC--HHHHHHHHHHTCEEECEECSHHHHH
T ss_pred -CCc--HHHHHHHHhcCCceeCCcCcHHHHH
Confidence 222 5788999999999999998655543
|
| >d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]
Probab=85.01 E-value=4.8 Score=36.68 Aligned_cols=125 Identities=10% Similarity=0.055 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHcCCCeEEEecCC---------------------Ch----hHHHHHHHHHHhh-CCCcEEEEeCC-----
Q 015289 189 EAAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDSSFILDAN----- 237 (409)
Q Consensus 189 ~~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~d~~~l~avr~~-~~~~~l~vDaN----- 237 (409)
+.++.|+.+++.||..|-|+.+. ++ +--++.+++||++ +++..+..-.+
T Consensus 160 ~f~~aA~~A~~aGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~lEii~aIr~~vg~~~~~~~~~~~~d~~ 239 (380)
T d1q45a_ 160 DYCLSALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDQYGGSIANRCRFLKQVVEGVVSAIGASKVGVRVSPAIDHL 239 (380)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGG
T ss_pred HHHHHHHHHHHhCcceeeeccchhhhHhhhhccccccCccccCccccchhhhHHHHHHHHHHHccccCceEEEeeccccc
Confidence 34666778888999999999751 12 2346788999997 77765443222
Q ss_pred ---CCCCHHHHHHHHHHH------HhCCCCCceeecCCCCC----------CHHHHHHhHHHhhccCCCeEEeCCCCCCH
Q 015289 238 ---EGYKPQEAVEVLEKL------YEMGVTPVLFEQPVHRD----------DWEGLGHVSHIAKDKFGVSVAADESCRSL 298 (409)
Q Consensus 238 ---~~w~~~~A~~~~~~L------~~~~l~~~~iEeP~~~~----------d~~~~~~l~~~~~~~~~ipIa~dEs~~~~ 298 (409)
..+..+..+.....+ ...++....+++|.... -......+.+..|...++||..-=.+ ++
T Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~Gg~-~~ 318 (380)
T d1q45a_ 240 DATDSDPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQTESGRQGSDEEEAKLMKSLRMAYNGTFMSSGGF-NK 318 (380)
T ss_dssp GCCCSCHHHHHHHHHHHHHHHHHTTSSCCSEEEEECCC---------------CHHHHHHHHHHHHSCSCEEEESSC-CH
T ss_pred ccccccchhhhhhhhhhhhHhhhhccccceeEEeccCcccccccccccccCchhhhHHHHHHHhhccCCcEEeCCCC-CH
Confidence 233344444433333 23333222445543210 00111223332344567888765454 68
Q ss_pred HHHHHHHHcCCCCEEE
Q 015289 299 DDVKKIVKGNLADVIN 314 (409)
Q Consensus 299 ~~~~~~i~~~a~div~ 314 (409)
+...++++.|.+|.|.
T Consensus 319 ~~ae~~l~~G~~DlV~ 334 (380)
T d1q45a_ 319 ELGMQAVQQGDADLVS 334 (380)
T ss_dssp HHHHHHHHTTSCSEEE
T ss_pred HHHHHHHHcCCccchh
Confidence 8889999999999874
|