Citrus Sinensis ID: 015488

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400------
Protein Sequence
MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDGVSNSKQVLVVA
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHEHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHccHcccccHcccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHEEEEEcHHHHccccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccEEEEEcccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccHHccccccHHHHHHHHccccEEEEc
Coil and Loop (DISEMBL)
MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLagaglgsghVFFSWFmefvppsnrgkwMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVfmpesprylctkgritdAHNILDKIAQfnqtslpsgnltsdgtndldeefstseetpllssarKRTTVRKSGFSSFLmlfsprffKTTILLWVLYFGNSFVYYGIVLLASelsgsqskcsssillsenvqdASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIanifapeiyptsmrstgAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNtidgvsnskqvlvva
Flexible Loop (DISEMBL)
MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQfnqtslpsgnLTSDGTNDLDEefstseetpllssarkrttvrKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFetkgkelvntidgvsnskqvlvva
Low Complexity Region (SEG)
MEEGSILGGALVTFVAGLLSAFSPNYisllilrglagaglgsgHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLAselsgsqskcsssillsENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTaailllealivlsvvvilliPFETKGKELVNTIDGVSNSKQVLVVA
Disordered region (IsUnstruct)
*****ILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQF*******************************************GFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELS*****CSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDGV**********
Disordered Region (DISOPRED)
MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSD********************************SSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDGVSNSK******
Disordered Region (DISEMBL)
MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTND***********************RKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASEL*********SILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDGVSNSKQVLVVA
Disordered Region (DISPRO)
*EEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLD***********************SGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDGVSNSKQVLVVA
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDGVSNSKQVLVVA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	406	2.2.26 [Sep-21-2011]
Q940M4	500	Organic cation/carnitine	yes	no	0.953	0.774	0.503	1e-96
Q2XWK0	548	Synaptic vesicle 2-relate	N/A	no	0.864	0.640	0.353	2e-53
Q8N4V2	548	Synaptic vesicle 2-relate	yes	no	0.857	0.635	0.342	3e-51
Q5R5T8	548	Synaptic vesicle 2-relate	yes	no	0.857	0.635	0.342	3e-51
Q1JP63	548	Synaptic vesicle 2-relate	yes	no	0.866	0.642	0.338	4e-51
Q9Z2I7	548	Synaptic vesicle 2-relate	yes	no	0.862	0.638	0.342	1e-47
Q8BFT9	548	Synaptic vesicle 2-relate	yes	no	0.866	0.642	0.343	3e-47
P30638	520	Putative transporter ZK63	yes	no	0.859	0.671	0.318	2e-46
Q6PDF3	494	Putative transporter SVOP	no	no	0.839	0.690	0.290	4e-37
Q8N434	492	Putative transporter SVOP	no	no	0.864	0.713	0.278	3e-36

>sp|Q940M4|OCT7_ARATH Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana GN=OCT7 PE=2 SV=1

 Score =  353 bits (906), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 203/403 (50%), Positives = 269/403 (66%), Gaps = 16/403 (3%)

Query: 10  ALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTF 69
           A+VTFVAG LSAFSPNY+ L+ILR L G GLG G V  SW++EF+P  +RG WMVVFS F
Sbjct: 97  AVVTFVAGFLSAFSPNYMWLIILRCLVGLGLGGGPVLASWYLEFIPAPSRGTWMVVFSAF 156

Query: 70  WTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHN 129
           WT G++ EA+LAW+VMP L WRWLLA S++P+ +LL+F  +  ESPRYL  +GR  +A  
Sbjct: 157 WTVGTIFEASLAWLVMPRLGWRWLLAFSSVPSSLLLLFYRWTSESPRYLILQGRKAEALA 216

Query: 130 ILDKIAQFNQTSLPSG-NLTSDGTNDLDEEFSTSEETPLLSSARKRTTV----------R 178
           IL+KIA+ N+T LP G   +   T   + +   +E T LL +      V          +
Sbjct: 217 ILEKIARMNKTQLPPGVLSSELETELEENKNIPTENTHLLKAGESGEAVAVSKIVLKADK 276

Query: 179 KSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENV 238
           + GF S L L SP   K T+LLWV++FGN+F YYG+VLL +EL+ S ++C  +     N 
Sbjct: 277 EPGF-SLLALLSPTLMKRTLLLWVVFFGNAFAYYGVVLLTTELNNSHNRCYPTEKQLRNS 335

Query: 239 QDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLT 298
            D + Y +VFI SFAE PGLL +A +VDR+GRK SM  M    CIFLLPL++ QS  + T
Sbjct: 336 NDVN-YRDVFIASFAEFPGLLISAAMVDRLGRKASMASMLFTCCIFLLPLLSHQSPFITT 394

Query: 299 ALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH 358
            LL G R+     F +  I+APEIYPT++R+TG GV  +VGRIGG++CPLVAVGLV  CH
Sbjct: 395 VLLFGGRICISAAFTVVYIYAPEIYPTAVRTTGVGVGSSVGRIGGILCPLVAVGLVHGCH 454

Query: 359 QTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDGVSNSKQ 401
           QT A+LL E +I++S + + L PFET G++L    D +S SK+
Sbjct: 455 QTIAVLLFEVVILVSGICVCLFPFETSGRDLT---DSISASKE 494

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.
Arabidopsis thaliana (taxid: 3702)

>sp|Q2XWK0|SVOP_XENLA Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1

 Score =  209 bits (533), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 138/390 (35%), Positives = 195/390 (50%), Gaps = 39/390 (10%)

Query: 13  TFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTF 72
           T   G+LSAF+P Y  +L+LRGL G G+G      + + EF+P  +R K +++   FW  
Sbjct: 160 TLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKSRAKCILLIEIFWAL 219

Query: 73  GSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILD 132
           G+V E  LA  VMP L WRWLL LSA+P  +  I   ++PES RY    G    A   L 
Sbjct: 220 GTVFEVLLAIFVMPTLGWRWLLILSALPLMLFAILCFWLPESARYEVLSGNQEKALATLK 279

Query: 133 KIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPR 192
           +IA  N   +P G L                   ++S    R  +R         LFSP+
Sbjct: 280 RIATENGAPMPLGKL-------------------IVSRQEDRGKIRD--------LFSPQ 312

Query: 193 FFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSS---------ILLSENVQDASV 243
           F  TT+LLW ++F N+F YYG+VLL +EL  +   CS S           L+        
Sbjct: 313 FRCTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISNQRKAVKPKCSLACEYLTVED 372

Query: 244 YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSG 303
           Y ++  T+ +E PGLL    ++DRVGRK +M I FI      L L       +LT  L  
Sbjct: 373 YTDLLWTTLSEFPGLLVTLWIIDRVGRKKTMAICFIIFSFSALLLFLCVGRNVLTVFLFI 432

Query: 304 ARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTSCHQTAA 362
           AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S + T  
Sbjct: 433 ARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSIYLT-- 490

Query: 363 ILLLEALIVLSVVVILLIPFETKGKELVNT 392
           +L+     VL+ V    +P ETKG+ L  +
Sbjct: 491 VLVYSGCCVLAAVASCFLPIETKGRGLQES 520

Xenopus laevis (taxid: 8355)

>sp|Q8N4V2|SVOP_HUMAN Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1

 Score =  202 bits (515), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 136/397 (34%), Positives = 202/397 (50%), Gaps = 49/397 (12%)

Query: 11  LVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFW 70
           L T   G+LSAF+P Y  +L+LRGL G G+G      + + EF+P   R K +++   FW
Sbjct: 158 LWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFW 217

Query: 71  TFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNI 130
             G+V E  LA  VMP L WRWLL LSA+P  +  +   ++PES RY    G    A   
Sbjct: 218 AIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIAT 277

Query: 131 LDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS 190
           L +IA  N   +P G L                   ++S    R  +R         LF+
Sbjct: 278 LKRIATENGAPMPLGKL-------------------IISRQEDRGKMRD--------LFT 310

Query: 191 PRFFKTTILLWVLYFGNSFVYYGIVLLASEL-------------SGSQSKCSSSILLSEN 237
           P F  TT+LLW ++F N+F YYG+VLL +EL                ++KCS   L  E 
Sbjct: 311 PHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCS---LACEY 367

Query: 238 VQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNIL 296
           + +   Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N+ 
Sbjct: 368 LSEED-YMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNV- 425

Query: 297 LTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVT 355
           LT LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +
Sbjct: 426 LTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 485

Query: 356 SCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNT 392
           S + T A+       +L+ +    +P ETKG+ L  +
Sbjct: 486 SVYLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 520

Homo sapiens (taxid: 9606)

>sp|Q5R5T8|SVOP_PONAB Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1

 Score =  202 bits (515), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 136/397 (34%), Positives = 202/397 (50%), Gaps = 49/397 (12%)

Query: 11  LVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFW 70
           L T   G+LSAF+P Y  +L+LRGL G G+G      + + EF+P   R K +++   FW
Sbjct: 158 LWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFW 217

Query: 71  TFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNI 130
             G+V E  LA  VMP L WRWLL LSA+P  +  +   ++PES RY    G    A   
Sbjct: 218 AIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIAT 277

Query: 131 LDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS 190
           L +IA  N   +P G L                   ++S    R  +R         LF+
Sbjct: 278 LKRIATENGAPMPLGKL-------------------IISRQEDRGKMRD--------LFT 310

Query: 191 PRFFKTTILLWVLYFGNSFVYYGIVLLASEL-------------SGSQSKCSSSILLSEN 237
           P F  TT+LLW ++F N+F YYG+VLL +EL                ++KCS   L  E 
Sbjct: 311 PHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCS---LACEY 367

Query: 238 VQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNIL 296
           + +   Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N+ 
Sbjct: 368 LSEED-YMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNV- 425

Query: 297 LTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVT 355
           LT LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +
Sbjct: 426 LTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 485

Query: 356 SCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNT 392
           S + T A+       +L+ +    +P ETKG+ L  +
Sbjct: 486 SVYLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 520

Pongo abelii (taxid: 9601)

>sp|Q1JP63|SVOP_BOVIN Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1

 Score =  202 bits (514), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 133/393 (33%), Positives = 197/393 (50%), Gaps = 41/393 (10%)

Query: 11  LVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFW 70
           L T   G+LSAF+P Y  +L+LRGL G G+G      + + EF+P   R K +++   FW
Sbjct: 158 LWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFW 217

Query: 71  TFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNI 130
             G+V E  LA  VMP L WRWLL LSA+P  +  +   ++PES RY    G    A   
Sbjct: 218 AIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIAT 277

Query: 131 LDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS 190
           L +IA  N   +P G L                   ++S    R  +R         LF+
Sbjct: 278 LKRIATENGAPMPLGKL-------------------IISRQEDRGKMRD--------LFT 310

Query: 191 PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSS----------ILLSENVQD 240
           P F  TT+LLW ++F N+F YYG+VLL +EL  +   CS S           L  E + +
Sbjct: 311 PHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSE 370

Query: 241 ASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTAL 300
              Y+++  T+ +E PG+L    ++DR+GRK +M + F+      L L       +LT L
Sbjct: 371 ED-YMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRNMLTLL 429

Query: 301 LSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTSCHQ 359
           L  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S + 
Sbjct: 430 LFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYL 489

Query: 360 TAAILLLEALIVLSVVVILLIPFETKGKELVNT 392
           T A+       +L+ +    +P ETKG+ L  +
Sbjct: 490 TLAV--YSGCCLLAALASCFLPIETKGRGLQES 520

Bos taurus (taxid: 9913)

>sp|Q9Z2I7|SVOP_RAT Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1

 Score =  191 bits (485), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 134/391 (34%), Positives = 197/391 (50%), Gaps = 41/391 (10%)

Query: 13  TFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTF 72
           T   G+LSAF+P Y  +L+LRGL G G+G      + + EF+P   R K +++   FW  
Sbjct: 160 TLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAI 219

Query: 73  GSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILD 132
           G+V E  LA  VMP L WRWLL LSA P  V  +   ++PES RY    G    A   L 
Sbjct: 220 GTVFEVLLAVFVMPSLGWRWLLLLSAAPLLVFAVLCFWLPESARYDVLSGNQEKAIATLK 279

Query: 133 KIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPR 192
           +IA  N   +P G L                   ++S    R  +R         LF+P 
Sbjct: 280 RIATENGAPMPLGKL-------------------IISRQEDRGKMRD--------LFTPH 312

Query: 193 FFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCS---------SSILLSENVQDASV 243
           F  TT+LLW ++F N+F YYG+VLL +EL  +   CS         +   L+        
Sbjct: 313 FRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSKED 372

Query: 244 YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNILLTALLS 302
           Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N+ LT LL 
Sbjct: 373 YMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNV-LTLLLF 431

Query: 303 GARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTSCHQTA 361
            AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S + T 
Sbjct: 432 IARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTL 491

Query: 362 AILLLEALIVLSVVVILLIPFETKGKELVNT 392
           A+       +L+ +    +P ETKG+ L  +
Sbjct: 492 AV--YSGCCLLAALASCFLPIETKGRALQES 520

Rattus norvegicus (taxid: 10116)

>sp|Q8BFT9|SVOP_MOUSE Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1

 Score =  189 bits (480), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 135/393 (34%), Positives = 198/393 (50%), Gaps = 41/393 (10%)

Query: 11  LVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFW 70
           L T   G+LSAF+P Y  +L+LRGL G G+G      + + EF+P   R K +++   FW
Sbjct: 158 LWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFW 217

Query: 71  TFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNI 130
             G+V E  LA  VMP L WRWLL LSA P  +  +   ++PES RY    G    A   
Sbjct: 218 AIGTVFEVLLAVFVMPSLGWRWLLLLSAAPLLLFAVLCFWLPESARYDVLSGNQEKAIAT 277

Query: 131 LDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS 190
           L +IA  N   +P G L                   ++S    R  +R         LF+
Sbjct: 278 LKRIATENGAPMPLGKL-------------------IISRQEDRGKMRD--------LFT 310

Query: 191 PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCS---------SSILLSENVQDA 241
           P F  TT+LLW ++F N+F YYG+VLL +EL  +   CS         +   L+      
Sbjct: 311 PHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSK 370

Query: 242 SVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNILLTAL 300
             Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N+ LT L
Sbjct: 371 EDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFIIFSLCSLLLFICIGRNV-LTLL 429

Query: 301 LSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTSCHQ 359
           L  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S + 
Sbjct: 430 LFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYL 489

Query: 360 TAAILLLEALIVLSVVVILLIPFETKGKELVNT 392
           T A+       +L+ V    +P ETKG+ L  +
Sbjct: 490 TLAV--YSGCCLLAGVASCFLPIETKGRALQES 520

Mus musculus (taxid: 10090)

>sp|P30638|YOU1_CAEEL Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5

 Score =  186 bits (473), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 126/396 (31%), Positives = 191/396 (48%), Gaps = 47/396 (11%)

Query: 11  LVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFW 70
           LV  + G++S  SP++  LL  RGL G G+G      + + EF+P + R K +V+  +FW
Sbjct: 157 LVACIMGVISGMSPHFYVLLFFRGLTGFGIGGVPQSVTLYAEFLPTAQRAKCVVLIESFW 216

Query: 71  TFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNI 130
             G+V EA LA+ VM    WR L+ LS++P  +  +   ++PES R+    G    A   
Sbjct: 217 AIGAVFEALLAYFVMESFGWRALMFLSSLPLGIFAVASFWLPESARFDMASGHPERALET 276

Query: 131 LDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS 190
           L   A+ N+  LP+G L S               T   S +R               L S
Sbjct: 277 LQAAARMNRVQLPTGRLVSS--------------TKAGSESR----------GDIANLLS 312

Query: 191 PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQ-------DASV 243
           P   KTTILLW ++   +F YYG+VL  + L  S  +C    L S   Q         S 
Sbjct: 313 PDLRKTTILLWCIWAITAFSYYGMVLFTTVLFQSHDECHGG-LFSNGTQMEVCQPLTRSD 371

Query: 244 YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSG 303
           Y ++  T+ AE PGL+   L+++  GRK +M + +    IF   L        +T L+  
Sbjct: 372 YFDLLSTTLAEFPGLIITVLIIEWFGRKKTMALEYAVFAIFTFLLYFCLDRFTVTVLIFV 431

Query: 304 ARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-------VGLVTS 356
           AR F  G F  A ++ PE+YPT++R+ G G   A+ RIG +V P +A       + L   
Sbjct: 432 ARAFISGAFQCAYVYTPEVYPTTLRAVGLGTCSAMARIGAIVTPFIAQVASEKSLSLPIG 491

Query: 357 CHQTAAILLLEALIVLSVVVILLIPFETKGKELVNT 392
            + TAAI        L ++  L +P ETKG++++++
Sbjct: 492 IYGTAAI--------LGLIASLSLPIETKGRQMMDS 519

Caenorhabditis elegans (taxid: 6239)

>sp|Q6PDF3|SVOPL_MOUSE Putative transporter SVOPL OS=Mus musculus GN=Svopl PE=2 SV=1

 Score =  155 bits (393), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 114/393 (29%), Positives = 192/393 (48%), Gaps = 52/393 (13%)

Query: 18  LLSAFSPNYISLLILRGLAGAGLGSGHVF-FSWFMEFVPPSNRGKWMVVFSTFWTFGSVS 76
           LL++FSP+YI  + LR + G G+ SGH        EF+P   RG  + +   FW  GS+ 
Sbjct: 129 LLTSFSPSYIWFVFLRTMVGCGV-SGHAQGLIIKTEFLPTKYRGYMLPLSQVFWLAGSLL 187

Query: 77  EAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQ 136
             ++A +V+P + WRWL+ +++IP  +L++   F+PES R+  + G    A N L+ IA+
Sbjct: 188 IISMASVVIPTIGWRWLIRIASIPGIILIMAFKFIPESARFNVSTGNTQAALNTLESIAK 247

Query: 137 FNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKT 196
            N++ +P G L                  P+L   R R          F  L   ++ +T
Sbjct: 248 MNRSVMPEGQLVE----------------PILEK-RGR----------FADLLDSKYLRT 280

Query: 197 TILLWVLYFGNSFVYYGIVLLASEL------SGSQSKCSSSILLSENVQDA--------- 241
           T+ +W+++ G SF YYG++L ++EL       GS+S+    ++  E   D+         
Sbjct: 281 TLQIWIIWLGISFAYYGVILASAELLERDLVCGSKSESEPEVV--ETTGDSGEGLSPCYC 338

Query: 242 -----SVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNIL 296
                S Y  + I++  E+       L ++ +GR+LS++I      +F L L    S+  
Sbjct: 339 HIFAPSDYRTMIISTLGEIALNPLNILGINFLGRRLSLSITMGCTALFFLLLNICTSSAG 398

Query: 297 LTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS 356
           L   L   R      F    I+  E+YPT MR+ G G + ++ RIG MV P ++  L+++
Sbjct: 399 LIGFLFMLRALVAANFNTIYIYTAEVYPTPMRAIGMGTSGSLCRIGAMVAPFISQVLMSA 458

Query: 357 CHQTAAILLLEALIVLSVVVILLIPFETKGKEL 389
                A+ L  ++ V+  +    +P ETKG+ L
Sbjct: 459 SF-LGALCLFSSVCVVCAISAFTLPIETKGRAL 490

Mus musculus (taxid: 10090)

>sp|Q8N434|SVOPL_HUMAN Putative transporter SVOPL OS=Homo sapiens GN=SVOPL PE=2 SV=2

 Score =  152 bits (385), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 111/399 (27%), Positives = 195/399 (48%), Gaps = 48/399 (12%)

Query: 11  LVTFVAG----LLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVF 66
           L++F+ G    LL++F+P+YI  + LR + G G+           EF+P   RG  + + 
Sbjct: 118 LISFLWGAYFSLLTSFAPSYIWFVFLRTMVGCGVSGHSQGLIIKTEFLPTKYRGYMLPLS 177

Query: 67  STFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITD 126
             FW  GS+    LA +++P + WRWL+ +++IP  +L++   F+PES R+  + G    
Sbjct: 178 QVFWLAGSLLIIGLASVIIPTIGWRWLIRVASIPGIILIVAFKFIPESARFNVSTGNTRA 237

Query: 127 AHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFL 186
           A   L+++A+ N++ +P G L                  P+L   R R          F 
Sbjct: 238 ALATLERVAKMNRSVMPEGKLVE----------------PVLEK-RGR----------FA 270

Query: 187 MLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASEL------SGSQSKCSSSILLSENVQD 240
            L   ++ +TT+ +WV++ G SF YYG++L ++EL       GS+S  +  +   ++ + 
Sbjct: 271 DLLDAKYLRTTLQIWVIWLGISFAYYGVILASAELLERDLVCGSKSDSAVVVTGGDSGES 330

Query: 241 AS-VYINVF---------ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT 290
            S  Y ++F         I++  E+       L ++ +GR+LS++I      +F L L  
Sbjct: 331 QSPCYCHMFAPSDYRTMIISTIGEIALNPLNILGINFLGRRLSLSITMGCTALFFLLLNI 390

Query: 291 LQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA 350
             S+  L   L   R      F    I+  E+YPT+MR+ G G + ++ RIG MV P ++
Sbjct: 391 CTSSAGLIGFLFMLRALVAANFNTVYIYTAEVYPTTMRALGMGTSGSLCRIGAMVAPFIS 450

Query: 351 VGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKEL 389
             ++ S     A+ L  ++ V+  +    +P ETKG+ L
Sbjct: 451 -QVLMSASILGALCLFSSVCVVCAISAFTLPIETKGRAL 488

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	406
224118680	492	predicted protein [Populus trichocarpa]	0.977	0.806	0.643	1e-132
255573803	498	sugar transporter, putative [Ricinus com	0.982	0.801	0.609	1e-129
255574249	497	sugar transporter, putative [Ricinus com	0.980	0.800	0.615	1e-128
383932368	482	MFS [Gossypium hirsutum]	0.943	0.794	0.635	1e-127
224118546	493	predicted protein [Populus trichocarpa]	0.958	0.789	0.614	1e-126
218195538	529	hypothetical protein OsI_17329 [Oryza sa	0.940	0.722	0.554	1e-115
38567900	588	OSJNBa0060N03.20 [Oryza sativa Japonica	0.940	0.649	0.554	1e-115
90265074	489	H0702G05.6 [Oryza sativa Indica Group]	0.940	0.781	0.554	1e-115
222629519	424	hypothetical protein OsJ_16102 [Oryza sa	0.940	0.900	0.554	1e-115
224118676	492	predicted protein [Populus trichocarpa]	0.950	0.784	0.587	1e-112

>gi|224118680|ref|XP_002331421.1| predicted protein [Populus trichocarpa] gi|222873635|gb|EEF10766.1| predicted protein [Populus trichocarpa]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 256/398 (64%), Positives = 310/398 (77%), Gaps = 1/398 (0%)

Query: 7   LGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVF 66
           LG  ++T  AG LS FSPNY+SLLILR L G GLG G VF SWF+EFVP S+RG WMVVF
Sbjct: 95  LGITIITSAAGFLSTFSPNYVSLLILRCLVGVGLGGGPVFSSWFLEFVPASHRGTWMVVF 154

Query: 67  STFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITD 126
           STFWTFG++ EAALAWIV+P L WRWLLA S++P+   L F   +PESPRYL  KGRIT+
Sbjct: 155 STFWTFGTIFEAALAWIVLPRLNWRWLLAFSSLPSIAQLFFYWIVPESPRYLSMKGRITE 214

Query: 127 AHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFL 186
           AHNIL+KIAQ NQ+ LP G L SD T  LDEE + S+ TPLLSS R   +  KSGFSSF+
Sbjct: 215 AHNILEKIAQLNQSKLPPGMLVSDSTIGLDEESAPSKYTPLLSSTRNLVSDFKSGFSSFV 274

Query: 187 MLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYIN 246
           MLFS +  +TT+LLW+L+FGN+F YYGI+LL SELS  + KC+S++L SEN+QD S+YIN
Sbjct: 275 MLFSSKLIRTTLLLWLLFFGNAFSYYGIILLTSELSSEEGKCASTVLRSENLQDDSLYIN 334

Query: 247 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARM 306
           VFITS AELPG+L +A++VDR GRKLSM  MF+  CIFLLPLV  Q   L TALL GARM
Sbjct: 335 VFITSLAELPGILLSAIIVDRFGRKLSMAFMFVLACIFLLPLVFHQHATLTTALLFGARM 394

Query: 307 FSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLL 366
            ++GTF +A I+APE+YPT +R+TGAGVA AVGRIGGMVCPLVAVGLV  CH   AI+L 
Sbjct: 395 CAIGTFTVAAIYAPEVYPTVIRATGAGVANAVGRIGGMVCPLVAVGLVAGCHLKEAIILF 454

Query: 367 EALIVLSVVVILLIPFETKGKELVNTIDGVSNSKQVLV 404
           E +IV+SVV +LL PFET G+EL +++   S+ KQV+V
Sbjct: 455 EVVIVISVVCVLLFPFETSGRELSDSL-AASDPKQVVV 491

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573803|ref|XP_002527821.1| sugar transporter, putative [Ricinus communis] gi|223532795|gb|EEF34573.1| sugar transporter, putative [Ricinus communis]

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 243/399 (60%), Positives = 293/399 (73%)

Query: 6   ILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVV 65
           ILG  L+T  AG LS F PNYISL+ LR L G GLG G VF SWF+EFVP S+RG WMVV
Sbjct: 99  ILGSTLLTCGAGSLSTFCPNYISLITLRCLVGIGLGGGPVFSSWFLEFVPASHRGTWMVV 158

Query: 66  FSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRIT 125
           +ST WTFG++ EA LAWIVMP L+WRWLLA S++P+ VLL+F    PESPRYLCTKGR T
Sbjct: 159 YSTSWTFGTIFEATLAWIVMPRLSWRWLLAFSSLPSIVLLLFYRLAPESPRYLCTKGRFT 218

Query: 126 DAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSF 185
           DAH IL+KIA  NQ  LP G L SD T  LDEE S+    PLLS ARKR +  KS FSSF
Sbjct: 219 DAHRILEKIALLNQAKLPGGILVSDSTTGLDEESSSLSHQPLLSLARKRVSSFKSAFSSF 278

Query: 186 LMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYI 245
            MLFS R  KTT+LLWVLYFGNSF+YYGI+LL SELSG Q +C S+    EN QD ++YI
Sbjct: 279 FMLFSSRLIKTTLLLWVLYFGNSFLYYGIILLTSELSGRQDECRSATSSLENHQDENLYI 338

Query: 246 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGAR 305
           ++FITS AELPG++ +A+ VDR GRK SM  MF+  CIFLLPLV+ QS +L T+ L GAR
Sbjct: 339 DIFITSLAELPGIILSAITVDRFGRKRSMIFMFVAACIFLLPLVSHQSAVLRTSFLFGAR 398

Query: 306 MFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILL 365
           M ++GTF IA I+ PE+YPT +R+TG+GVA A GRIGGM+CPLVAVGLVT CH  A I++
Sbjct: 399 MCAIGTFTIACIYCPELYPTPVRTTGSGVASAAGRIGGMICPLVAVGLVTGCHVEAGIIV 458

Query: 366 LEALIVLSVVVILLIPFETKGKELVNTIDGVSNSKQVLV 404
            E +  +S + +L  P+ETKG EL +++         LV
Sbjct: 459 FEVVAAISAICLLFFPYETKGCELSDSVGPFDPKHNNLV 497

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574249|ref|XP_002528039.1| sugar transporter, putative [Ricinus communis] gi|223532569|gb|EEF34357.1| sugar transporter, putative [Ricinus communis]

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 246/400 (61%), Positives = 304/400 (76%), Gaps = 2/400 (0%)

Query: 6   ILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVV 65
           +L   ++T  AG +SAFSPNY++L++LR L G GLG  HVF SWF+EF+P S+RGKWMV+
Sbjct: 97  VLSITVITSGAGFISAFSPNYLTLVVLRCLVGFGLGGTHVFLSWFLEFIPTSHRGKWMVI 156

Query: 66  FSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRIT 125
           FSTFWT G + EA+LAWIVM  L WRWLLALS +P+F LL+F   +PESPRYLC KGR  
Sbjct: 157 FSTFWTLGIIFEASLAWIVMLRLNWRWLLALSTVPSFSLLLFYGLVPESPRYLCLKGRTA 216

Query: 126 DAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEET-PLLSSARKRTTVRKSGFSS 184
            AH +L+KIA  NQ  LP G L S G    DEE S  E+   LL   R++ +  KSGFSS
Sbjct: 217 QAHQVLEKIALVNQKELPPGMLVSYGKIKEDEEISALEQKRSLLFMDREKISTLKSGFSS 276

Query: 185 FLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVY 244
           F +LFS    +TT+LLWVL+FGN F YYGI+LL S+LS S+SKCS +IL S+N QD S++
Sbjct: 277 FSLLFSSNLIQTTLLLWVLFFGNVFSYYGIILLTSQLSSSESKCSLTILHSQNPQDESLF 336

Query: 245 INVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGA 304
           ++V ITSFAELPG+L +A++VDR GRKLSM IMFIF  IFLLPLV+ QS+IL T LL GA
Sbjct: 337 MDVLITSFAELPGILLSAMMVDRFGRKLSMAIMFIFAWIFLLPLVSRQSDILTTGLLFGA 396

Query: 305 RMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAIL 364
           RMFS+GTF +A+I+APE+YPTS+RSTGAG A AVGRIGGMVCPLVAV LV++CH  AAI+
Sbjct: 397 RMFSLGTFTVASIYAPELYPTSIRSTGAGTASAVGRIGGMVCPLVAVALVSNCHFKAAII 456

Query: 365 LLEALIVLSVVVILLIPFETKGKELVNTIDGVSNSKQVLV 404
           L E +I ++VV ILL PFET G+EL + +     SKQ LV
Sbjct: 457 LFEVVIAITVVCILLFPFETSGRELSDRL-AAPESKQDLV 495

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|383932368|gb|AFH57281.1| MFS [Gossypium hirsutum]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 244/384 (63%), Positives = 290/384 (75%), Gaps = 1/384 (0%)

Query: 10  ALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTF 69
           ++VTF AGLLS FSPNY++L +LRGL G GLG   VF SWF+EF+P SNRG WMVVFSTF
Sbjct: 98  SMVTFGAGLLSTFSPNYLTLALLRGLVGFGLGGSSVFLSWFLEFIPASNRGMWMVVFSTF 157

Query: 70  WTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHN 129
           WTFGS+ EA LAWIVMP L WRW+LA SA+P+F LLI     PESPRYLC KG  +DA  
Sbjct: 158 WTFGSIFEATLAWIVMPRLNWRWVLAFSAVPSFALLILYGVAPESPRYLCMKGNTSDALR 217

Query: 130 ILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEET-PLLSSARKRTTVRKSGFSSFLML 188
           IL+KIA  NQT LP G L S  +ND DEE + SE T PLL S  K TT  KSGFSSF ML
Sbjct: 218 ILEKIASVNQTKLPPGVLVSGRSNDKDEESAPSENTAPLLPSLSKSTTQSKSGFSSFFML 277

Query: 189 FSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVF 248
           FS +  +TT+LLWVL+FG+SF YYGI+LL S+LS  QS C  S+  + N QD  +Y+N F
Sbjct: 278 FSSKLIRTTLLLWVLFFGDSFSYYGIILLTSKLSSGQSTCFPSLQSNINPQDDGLYLNAF 337

Query: 249 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFS 308
           ITS AELPGLL +A+LVDRVGRK SM IMF    IFL PL+  Q  +L T LL GARM +
Sbjct: 338 ITSMAELPGLLLSAILVDRVGRKHSMAIMFGLAFIFLTPLLIQQPAVLTTCLLFGARMNA 397

Query: 309 MGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEA 368
           MGTF +A+I++PE+YPTS+R+TGAGVA A+GRIGGMVCPLVAVGLV  CHQTAA+ L   
Sbjct: 398 MGTFTVASIYSPELYPTSVRTTGAGVASAIGRIGGMVCPLVAVGLVNECHQTAAVALFLV 457

Query: 369 LIVLSVVVILLIPFETKGKELVNT 392
            IV+S+V I L P++TKG+EL +T
Sbjct: 458 AIVVSIVCIQLFPYDTKGRELSDT 481

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118546|ref|XP_002331389.1| predicted protein [Populus trichocarpa] gi|222873603|gb|EEF10734.1| predicted protein [Populus trichocarpa]

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/389 (61%), Positives = 294/389 (75%)

Query: 14  FVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFG 73
           F +GLLSAFSPNY SL+I+R L G GLG   V  SWF+EFVP  +RGKWMVVFSTFWT G
Sbjct: 101 FQSGLLSAFSPNYESLVIIRCLVGLGLGGSTVLCSWFLEFVPAPHRGKWMVVFSTFWTLG 160

Query: 74  SVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDK 133
           ++ EA+LAW+VM  L+WRWLLA S++P+  LL+F   +PESPRYLC KGRI DAH IL K
Sbjct: 161 AIFEASLAWLVMQRLSWRWLLAFSSLPSIALLLFYGIVPESPRYLCMKGRINDAHKILQK 220

Query: 134 IAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRF 193
           IA  NQ+ LP G L  D T   +E+ + S+ TPLLSS RK     KS FSSF MLFS   
Sbjct: 221 IALLNQSELPPGMLVPDSTVGQEEKSAPSKYTPLLSSTRKVIVDFKSVFSSFFMLFSSTL 280

Query: 194 FKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFA 253
            +TT+LLWVL FGN F YYGI+LL SELS  Q KC S+IL SEN+Q+ S+YINVF+TS A
Sbjct: 281 IQTTLLLWVLLFGNVFSYYGIILLTSELSSQQGKCGSTILSSENLQNDSLYINVFVTSLA 340

Query: 254 ELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFI 313
           ELPGLL +A++VDR+GRKLSM +M +  CIFL PL+   S  L TA+L GARM  MG+F 
Sbjct: 341 ELPGLLLSAIIVDRLGRKLSMALMLVLGCIFLFPLLFNVSANLTTAMLFGARMCVMGSFT 400

Query: 314 IANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLS 373
           IA ++APE+YPT++R+TGAGVA +VGRIGGM+CPLVAVGLVT C+ T AI+L E ++ +S
Sbjct: 401 IATLYAPELYPTAVRATGAGVASSVGRIGGMICPLVAVGLVTGCYLTEAIILFEVVMAIS 460

Query: 374 VVVILLIPFETKGKELVNTIDGVSNSKQV 402
               LL PFETKG+EL +++D VS+S QV
Sbjct: 461 AFSSLLFPFETKGQELSDSVDHVSDSIQV 489

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218195538|gb|EEC77965.1| hypothetical protein OsI_17329 [Oryza sativa Indica Group]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/388 (55%), Positives = 272/388 (70%), Gaps = 6/388 (1%)

Query: 10  ALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTF 69
           A+VT  AG LSAF+PNY+SL+ LR L G GLG G V  SWF+EFVP   RG WMVVFS F
Sbjct: 138 AIVTSGAGFLSAFAPNYVSLISLRFLVGIGLGGGPVLASWFLEFVPAPTRGTWMVVFSAF 197

Query: 70  WTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHN 129
           WT G++ EA+LAW VMP   WRWLLALSA+P+FVLL+F V  PESPR+LC KGR+T+A +
Sbjct: 198 WTVGTIFEASLAWTVMPKFGWRWLLALSAVPSFVLLLFYVITPESPRFLCMKGRVTEAMD 257

Query: 130 ILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSF---- 185
           +L+K+A+ N   LPSG L SD   +LDE  STSE T LL+ A +  T+ +   SSF    
Sbjct: 258 VLEKMARLNNVQLPSGRLVSDKNIELDE-LSTSESTTLLADAEEDDTIIEDKVSSFGGLS 316

Query: 186 -LMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVY 244
              L SP+  + T+LLW+ +FGN+F YYGIVLL SELS     C+   + S +  DAS+Y
Sbjct: 317 VAKLLSPKLIRATLLLWMTFFGNAFSYYGIVLLTSELSNGNRICAKEEVESIHSNDASLY 376

Query: 245 INVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGA 304
            NVFI+SFAE+PG   +A++VDR+GRKLSM  M    C+FL PL+  +++IL    L GA
Sbjct: 377 KNVFISSFAEIPGSFLSAMIVDRIGRKLSMASMLFTSCVFLFPLIFSRTDILTRVSLFGA 436

Query: 305 RMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAIL 364
           R+    +F I  I+APEIYPTS+R+TG GVA +VGRIGG++CPLVAV LV SC QT AIL
Sbjct: 437 RLCISASFTIVYIYAPEIYPTSVRTTGIGVASSVGRIGGILCPLVAVALVHSCQQTTAIL 496

Query: 365 LLEALIVLSVVVILLIPFETKGKELVNT 392
           L E +I LS + +   PFETKG  L +T
Sbjct: 497 LFELVIFLSGLAVSFFPFETKGCRLNDT 524

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38567900|emb|CAE03655.2| OSJNBa0060N03.20 [Oryza sativa Japonica Group]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/388 (55%), Positives = 272/388 (70%), Gaps = 6/388 (1%)

Query: 10  ALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTF 69
           A+VT  AG LSAF+PNY+SL+ LR L G GLG G V  SWF+EFVP   RG WMVVFS F
Sbjct: 197 AIVTSGAGFLSAFAPNYVSLISLRFLVGIGLGGGPVLASWFLEFVPAPTRGTWMVVFSAF 256

Query: 70  WTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHN 129
           WT G++ EA+LAW VMP   WRWLLALSA+P+FVLL+F V  PESPR+LC KGR+T+A +
Sbjct: 257 WTVGTIFEASLAWTVMPKFGWRWLLALSAVPSFVLLLFYVITPESPRFLCMKGRVTEAMD 316

Query: 130 ILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSF---- 185
           +L+K+A+ N   LPSG L SD   +LDE  STSE T LL+ A +  T+ +   SSF    
Sbjct: 317 VLEKMARLNNVQLPSGRLVSDKNIELDE-LSTSESTTLLADAEEDDTIIEDKVSSFGGLS 375

Query: 186 -LMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVY 244
              L SP+  + T+LLW+ +FGN+F YYGIVLL SELS     C+   + S +  DAS+Y
Sbjct: 376 VAKLLSPKLIRATLLLWMTFFGNAFSYYGIVLLTSELSNGNRICAKEEVESIHSNDASLY 435

Query: 245 INVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGA 304
            NVFI+SFAE+PG   +A++VDR+GRKLSM  M    C+FL PL+  +++IL    L GA
Sbjct: 436 KNVFISSFAEIPGSFLSAMIVDRIGRKLSMASMLFTSCVFLFPLIFSRTDILTRVSLFGA 495

Query: 305 RMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAIL 364
           R+    +F I  I+APEIYPTS+R+TG GVA +VGRIGG++CPLVAV LV SC QT AIL
Sbjct: 496 RLCISASFTIVYIYAPEIYPTSVRTTGIGVASSVGRIGGILCPLVAVALVHSCQQTTAIL 555

Query: 365 LLEALIVLSVVVILLIPFETKGKELVNT 392
           L E +I LS + +   PFETKG  L +T
Sbjct: 556 LFELVIFLSGLAVSFFPFETKGCRLNDT 583

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|90265074|emb|CAH67747.1| H0702G05.6 [Oryza sativa Indica Group]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/388 (55%), Positives = 272/388 (70%), Gaps = 6/388 (1%)

Query: 10  ALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTF 69
           A+VT  AG LSAF+PNY+SL+ LR L G GLG G V  SWF+EFVP   RG WMVVFS F
Sbjct: 98  AIVTSGAGFLSAFAPNYVSLISLRFLVGIGLGGGPVLASWFLEFVPAPTRGTWMVVFSAF 157

Query: 70  WTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHN 129
           WT G++ EA+LAW VMP   WRWLLALSA+P+FVLL+F V  PESPR+LC KGR+T+A +
Sbjct: 158 WTVGTIFEASLAWTVMPKFGWRWLLALSAVPSFVLLLFYVITPESPRFLCMKGRVTEAMD 217

Query: 130 ILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSF---- 185
           +L+K+A+ N   LPSG L SD   +LDE  STSE T LL+ A +  T+ +   SSF    
Sbjct: 218 VLEKMARLNNVQLPSGRLVSDKNIELDE-LSTSESTTLLADAEEDDTIIEDKVSSFGGLS 276

Query: 186 -LMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVY 244
              L SP+  + T+LLW+ +FGN+F YYGIVLL SELS     C+   + S +  DAS+Y
Sbjct: 277 VAKLLSPKLIRATLLLWMTFFGNAFSYYGIVLLTSELSNGNRICAKEEVESIHSNDASLY 336

Query: 245 INVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGA 304
            NVFI+SFAE+PG   +A++VDR+GRKLSM  M    C+FL PL+  +++IL    L GA
Sbjct: 337 KNVFISSFAEIPGSFLSAMIVDRIGRKLSMASMLFTSCVFLFPLIFSRTDILTRVSLFGA 396

Query: 305 RMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAIL 364
           R+    +F I  I+APEIYPTS+R+TG GVA +VGRIGG++CPLVAV LV SC QT AIL
Sbjct: 397 RLCISASFTIVYIYAPEIYPTSVRTTGIGVASSVGRIGGILCPLVAVALVHSCQQTTAIL 456

Query: 365 LLEALIVLSVVVILLIPFETKGKELVNT 392
           L E +I LS + +   PFETKG  L +T
Sbjct: 457 LFELVIFLSGLAVSFFPFETKGCRLNDT 484

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222629519|gb|EEE61651.1| hypothetical protein OsJ_16102 [Oryza sativa Japonica Group]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/388 (55%), Positives = 272/388 (70%), Gaps = 6/388 (1%)

Query: 10  ALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTF 69
           A+VT  AG LSAF+PNY+SL+ LR L G GLG G V  SWF+EFVP   RG WMVVFS F
Sbjct: 33  AIVTSGAGFLSAFAPNYVSLISLRFLVGIGLGGGPVLASWFLEFVPAPTRGTWMVVFSAF 92

Query: 70  WTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHN 129
           WT G++ EA+LAW VMP   WRWLLALSA+P+FVLL+F V  PESPR+LC KGR+T+A +
Sbjct: 93  WTVGTIFEASLAWTVMPKFGWRWLLALSAVPSFVLLLFYVITPESPRFLCMKGRVTEAMD 152

Query: 130 ILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSF---- 185
           +L+K+A+ N   LPSG L SD   +LDE  STSE T LL+ A +  T+ +   SSF    
Sbjct: 153 VLEKMARLNNVQLPSGRLVSDKNIELDE-LSTSESTTLLADAEEDDTIIEDKVSSFGGLS 211

Query: 186 -LMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVY 244
              L SP+  + T+LLW+ +FGN+F YYGIVLL SELS     C+   + S +  DAS+Y
Sbjct: 212 VAKLLSPKLIRATLLLWMTFFGNAFSYYGIVLLTSELSNGNRICAKEEVESIHSNDASLY 271

Query: 245 INVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGA 304
            NVFI+SFAE+PG   +A++VDR+GRKLSM  M    C+FL PL+  +++IL    L GA
Sbjct: 272 KNVFISSFAEIPGSFLSAMIVDRIGRKLSMASMLFTSCVFLFPLIFSRTDILTRVSLFGA 331

Query: 305 RMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAIL 364
           R+    +F I  I+APEIYPTS+R+TG GVA +VGRIGG++CPLVAV LV SC QT AIL
Sbjct: 332 RLCISASFTIVYIYAPEIYPTSVRTTGIGVASSVGRIGGILCPLVAVALVHSCQQTTAIL 391

Query: 365 LLEALIVLSVVVILLIPFETKGKELVNT 392
           L E +I LS + +   PFETKG  L +T
Sbjct: 392 LFELVIFLSGLAVSFFPFETKGCRLNDT 419

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118676|ref|XP_002331420.1| predicted protein [Populus trichocarpa] gi|222873634|gb|EEF10765.1| predicted protein [Populus trichocarpa]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/388 (58%), Positives = 287/388 (73%), Gaps = 2/388 (0%)

Query: 7   LGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVF 66
           LG  L+T  AGLLSAFSPNY SL+ILR L G+GLG G VF SWF+EFVP S+RGK M++ 
Sbjct: 105 LGATLLTCGAGLLSAFSPNYASLVILRCLVGSGLGGGSVFSSWFLEFVPASHRGKRMLLL 164

Query: 67  STFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITD 126
           S FW FG++ EA LAW+VMP L+WRWLLA+S +PAF LL+F   +PESPRYLC KGRI D
Sbjct: 165 SWFWAFGTIFEALLAWMVMPRLSWRWLLAVSCLPAFALLLFYSHVPESPRYLCMKGRIND 224

Query: 127 AHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFL 186
           A+NIL+KIA  NQ+ LP G L  D T  LDEE +TSE TPLLS+  K     +SGF SFL
Sbjct: 225 AYNILEKIALLNQSKLPPGELVPDSTIGLDEESATSEYTPLLSTTEKMDLDFRSGFQSFL 284

Query: 187 MLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYIN 246
           MLFS +  +TT+LLW L FGN F YY I+LL SELS  QS+C S++L SEN    S+YIN
Sbjct: 285 MLFSSKLIRTTLLLWELLFGNVFSYYAIILLTSELSSWQSRCGSNLLKSENPD--SLYIN 342

Query: 247 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARM 306
           VFI++ AELPG+L +A +VDR+GRKL++   F+   IFLLPLV  QS  L  + L GARM
Sbjct: 343 VFISNLAELPGILLSATIVDRIGRKLTVAFTFVLAGIFLLPLVYHQSATLTMSFLFGARM 402

Query: 307 FSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLL 366
            +   + +A I+  E+YPTS+R+TGAG A A G++GGM+CPLVAVGLVTSC  T AI+L 
Sbjct: 403 STKAAYSVATIYVQELYPTSVRATGAGAANAAGKVGGMICPLVAVGLVTSCQITEAIILF 462

Query: 367 EALIVLSVVVILLIPFETKGKELVNTID 394
           E L+ +S V ++ IP +TKG++L ++ID
Sbjct: 463 EVLMAISAVCVMFIPVDTKGQKLCDSID 490

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	406
TAIR|locus:2089270	500	NiaP "nicotinate transporter"	0.953	0.774	0.459	1.4e-85
ZFIN|ZDB-GENE-070705-359	411	svopb "SV2 related protein hom	0.492	0.486	0.309	3.6e-45
UNIPROTKB|F1NIB3	554	SVOP "Uncharacterized protein"	0.490	0.359	0.323	1.6e-41
UNIPROTKB|F6XK47	483	SVOP "Uncharacterized protein"	0.490	0.412	0.323	1.9e-41
RGD|620277	548	Svop "SV2 related protein" [Ra	0.490	0.363	0.323	4.2e-41
UNIPROTKB|F1LPX1	548	Svop "Synaptic vesicle 2-relat	0.490	0.363	0.323	4.2e-41
UNIPROTKB|Q9Z2I7	548	Svop "Synaptic vesicle 2-relat	0.490	0.363	0.323	4.2e-41
UNIPROTKB|E2QZ16	548	SVOP "Uncharacterized protein"	0.490	0.363	0.323	4.3e-41
UNIPROTKB|Q8N4V2	548	SVOP "Synaptic vesicle 2-relat	0.490	0.363	0.323	4.4e-41
UNIPROTKB|G3MZU5	547	SVOP "Synaptic vesicle 2-relat	0.490	0.363	0.319	5.6e-41

TAIR|locus:2089270 NiaP "nicotinate transporter" [Arabidopsis thaliana (taxid:3702)]

 Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
 Identities = 185/403 (45%), Positives = 240/403 (59%)

Query:    10 ALVTFVAGLLSAFSPNYXXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTF 69
             A+VTFVAG LSAFSPNY                  V  SW++EF+P  +RG WMVVFS F
Sbjct:    97 AVVTFVAGFLSAFSPNYMWLIILRCLVGLGLGGGPVLASWYLEFIPAPSRGTWMVVFSAF 156

Query:    70 WTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHN 129
             WT G++ EA+LAW+VMP L WRWLLA S++P+ +LL+F  +  ESPRYL  +GR  +A  
Sbjct:   157 WTVGTIFEASLAWLVMPRLGWRWLLAFSSVPSSLLLLFYRWTSESPRYLILQGRKAEALA 216

Query:   130 ILDKIAQFNQTSLPSGNLTSDGTNDLDEEFST-SEETPLLSSARKRTTV----------R 178
             IL+KIA+ N+T LP G L+S+   +L+E  +  +E T LL +      V          +
Sbjct:   217 ILEKIARMNKTQLPPGVLSSELETELEENKNIPTENTHLLKAGESGEAVAVSKIVLKADK 276

Query:   179 KSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENV 238
             + GFS  L L SP   K T+LLWV++FGN+F YYG+VLL                   N 
Sbjct:   277 EPGFS-LLALLSPTLMKRTLLLWVVFFGNAFAYYGVVLLTTELNNSHNRCYPTEKQLRNS 335

Query:   239 QDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLT 298
              D + Y +VFI SFAE PGLL +A +VDR+GRK SM  M    CIFLLPL++ QS  + T
Sbjct:   336 NDVN-YRDVFIASFAEFPGLLISAAMVDRLGRKASMASMLFTCCIFLLPLLSHQSPFITT 394

Query:   299 ALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH 358
              LL G R+     F +  I+APEIYPT++R+TG GV  +VGRIGG++CPLVAVGLV  CH
Sbjct:   395 VLLFGGRICISAAFTVVYIYAPEIYPTAVRTTGVGVGSSVGRIGGILCPLVAVGLVHGCH 454

Query:   359 QTXXXXXXXXXXXXXXXXXXXXPFETKGKELVNTIDGVSNSKQ 401
             QT                    PFET G++L    D +S SK+
Sbjct:   455 QTIAVLLFEVVILVSGICVCLFPFETSGRDLT---DSISASKE 494

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0090416 "nicotinate transporter activity" evidence=IDA

GO:0090417 "N-methylnicotinate transporter activity" evidence=IDA

GO:2001142 "nicotinate transport" evidence=IDA

GO:2001143 "N-methylnicotinate transport" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

ZFIN|ZDB-GENE-070705-359 svopb "SV2 related protein homolog b (rat)" [Danio rerio (taxid:7955)]

 Score = 270 (100.1 bits), Expect = 3.6e-45, Sum P(2) = 3.6e-45
 Identities = 65/210 (30%), Positives = 106/210 (50%)

Query:   188 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXEN-----VQDAS 242
             LF P + +TT+L+W ++F ++F+YYG+VLL                  E+      Q  +
Sbjct:   193 LFIPEYRRTTLLVWCIWFFSAFLYYGLVLLTTELFQAGSACVTENSNIEHQCSLMCQHLT 252

Query:   243 V--YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTAL 300
             +  Y+++  T+FAE PGLL A  +V+R+ R+ SM I F    + +LPL      I+LT  
Sbjct:   253 IDDYLDLLWTTFAEFPGLLVALWMVNRISRRKSMVICFSLFTVCILPLYACTHRIVLTVF 312

Query:   301 LSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTSCHQ 359
             +  AR      + IA ++ PE++PT+ R+ G G +  + R+G +V P +A V L +S + 
Sbjct:   313 IFIARTSINAGWQIAYVYTPEVFPTATRAIGIGTSSGMSRVGALVTPFIAQVLLKSSVYL 372

Query:   360 TXXXXXXXXXXXXXXXXXXXXPFETKGKEL 389
             T                    P ET+G+ L
Sbjct:   373 TLSVYLIFGLLGTAACWAL--PMETEGRSL 400

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NIB3 SVOP "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 270 (100.1 bits), Expect = 1.6e-41, Sum P(2) = 1.6e-41
 Identities = 69/213 (32%), Positives = 103/213 (48%)

Query:   188 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---- 243
             LF+P F  TT+LLW ++F N+F YYG+VLL                  E     S+    
Sbjct:   314 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTEFFQAGDVCSISSRRKEVKAKCSLTCEY 373

Query:   244 -----YINVFITSFAELPGLLTAALLVDRVGRKLSMTI-MFIFVCIFLLPLVTLQSNILL 297
                  Y ++  T+ +E PG+L    ++DR+GRK +M +  F+F    LL  + +  N+L 
Sbjct:   374 LTEEDYTDLLWTTLSEFPGVLVTLWIIDRIGRKKTMALSFFVFSFCSLLLFLCVGRNVL- 432

Query:   298 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTS 356
             T LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S
Sbjct:   433 TVLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS 492

Query:   357 CHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 389
              + T                    P ETKG+ L
Sbjct:   493 VYLTLAVYSGCCLLAAVASFFL--PIETKGRGL 523

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F6XK47 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 264 (98.0 bits), Expect = 1.9e-41, Sum P(2) = 1.9e-41
 Identities = 69/213 (32%), Positives = 103/213 (48%)

Query:   188 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---- 243
             LF+P F  TT+LLW ++F N+F YYG+VLL                        S+    
Sbjct:   243 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSQKKAVEAKCSLACEY 302

Query:   244 -----YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNILL 297
                  Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N +L
Sbjct:   303 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSLCSLLLFICVGRN-ML 361

Query:   298 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTS 356
             T LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S
Sbjct:   362 TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS 421

Query:   357 CHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 389
              + T                    P ETKG+ L
Sbjct:   422 VYLTLAVYSGCCLLAALASCFL--PIETKGRGL 452

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

RGD|620277 Svop "SV2 related protein" [Rattus norvegicus (taxid:10116)]

 Score = 266 (98.7 bits), Expect = 4.2e-41, Sum P(2) = 4.2e-41
 Identities = 69/213 (32%), Positives = 103/213 (48%)

Query:   188 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---- 243
             LF+P F  TT+LLW ++F N+F YYG+VLL                        S+    
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query:   244 -----YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNILL 297
                  Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N+L 
Sbjct:   368 LSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNVL- 426

Query:   298 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTS 356
             T LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S
Sbjct:   427 TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS 486

Query:   357 CHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 389
              + T                    P ETKG+ L
Sbjct:   487 VYLTLAVYSGCCLLAALASCFL--PIETKGRAL 517

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

UNIPROTKB|F1LPX1 Svop "Synaptic vesicle 2-related protein" [Rattus norvegicus (taxid:10116)]

 Score = 266 (98.7 bits), Expect = 4.2e-41, Sum P(2) = 4.2e-41
 Identities = 69/213 (32%), Positives = 103/213 (48%)

Query:   188 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---- 243
             LF+P F  TT+LLW ++F N+F YYG+VLL                        S+    
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query:   244 -----YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNILL 297
                  Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N+L 
Sbjct:   368 LSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNVL- 426

Query:   298 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTS 356
             T LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S
Sbjct:   427 TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS 486

Query:   357 CHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 389
              + T                    P ETKG+ L
Sbjct:   487 VYLTLAVYSGCCLLAALASCFL--PIETKGRAL 517

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9Z2I7 Svop "Synaptic vesicle 2-related protein" [Rattus norvegicus (taxid:10116)]

 Score = 266 (98.7 bits), Expect = 4.2e-41, Sum P(2) = 4.2e-41
 Identities = 69/213 (32%), Positives = 103/213 (48%)

Query:   188 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---- 243
             LF+P F  TT+LLW ++F N+F YYG+VLL                        S+    
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query:   244 -----YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNILL 297
                  Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N+L 
Sbjct:   368 LSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNVL- 426

Query:   298 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTS 356
             T LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S
Sbjct:   427 TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS 486

Query:   357 CHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 389
              + T                    P ETKG+ L
Sbjct:   487 VYLTLAVYSGCCLLAALASCFL--PIETKGRAL 517

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2QZ16 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 264 (98.0 bits), Expect = 4.3e-41, Sum P(2) = 4.3e-41
 Identities = 69/213 (32%), Positives = 103/213 (48%)

Query:   188 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---- 243
             LF+P F  TT+LLW ++F N+F YYG+VLL                        S+    
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSQKKAVEAKCSLACEY 367

Query:   244 -----YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNILL 297
                  Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N +L
Sbjct:   368 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSLCSLLLFICVGRN-ML 426

Query:   298 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTS 356
             T LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S
Sbjct:   427 TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS 486

Query:   357 CHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 389
              + T                    P ETKG+ L
Sbjct:   487 VYLTLAVYSGCCLLAALASCFL--PIETKGRGL 517

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|Q8N4V2 SVOP "Synaptic vesicle 2-related protein" [Homo sapiens (taxid:9606)]

 Score = 263 (97.6 bits), Expect = 4.4e-41, Sum P(2) = 4.4e-41
 Identities = 69/213 (32%), Positives = 103/213 (48%)

Query:   188 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---- 243
             LF+P F  TT+LLW ++F N+F YYG+VLL                        S+    
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEY 367

Query:   244 -----YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNILL 297
                  Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N+L 
Sbjct:   368 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVL- 426

Query:   298 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTS 356
             T LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S
Sbjct:   427 TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS 486

Query:   357 CHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 389
              + T                    P ETKG+ L
Sbjct:   487 VYLTLAVYSGCCLLAALASCFL--PIETKGRGL 517

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=ISS

UNIPROTKB|G3MZU5 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)]

 Score = 262 (97.3 bits), Expect = 5.6e-41, Sum P(2) = 5.6e-41
 Identities = 68/213 (31%), Positives = 103/213 (48%)

Query:   188 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---- 243
             LF+P F  TT+LLW ++F N+F YYG+VLL                        S+    
Sbjct:   307 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 366

Query:   244 -----YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFI-FVCIFLLPLVTLQSNILL 297
                  Y+++  T+ +E PG+L    ++DR+GRK +M + F+ F    LL  + +  N +L
Sbjct:   367 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRN-ML 425

Query:   298 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTS 356
             T LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S
Sbjct:   426 TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS 485

Query:   357 CHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 389
              + T                    P ETKG+ L
Sbjct:   486 VYLTLAVYSGCCLLAALASCFL--PIETKGRGL 516

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q940M4	OCT7_ARATH	No assigned EC number	0.5037	0.9532	0.774	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	406
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	6e-63
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	7e-27
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	5e-26
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	2e-19
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	4e-17
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	1e-11
PRK03893	496	PRK03893, PRK03893, putative sialic acid transport	7e-11
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	4e-10
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	6e-10
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	4e-09
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	4e-08
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	6e-08
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	1e-07
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-07
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	4e-06
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	1e-05
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	2e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	4e-04
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	4e-04
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	5e-04
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	6e-04
PRK10406	432	PRK10406, PRK10406, alpha-ketoglutarate transporte	0.001
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	0.001

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score =  209 bits (535), Expect = 6e-63
 Identities = 119/391 (30%), Positives = 181/391 (46%), Gaps = 59/391 (15%)

Query: 11  LVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVF-FSWFMEFVPPSNRGKWMVVFSTF 69
           LVT V+G+L+AFSPNY   L+ R L G G+G   V       EF+P   R     +   F
Sbjct: 165 LVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVF 224

Query: 70  WTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHN 129
           ++ G V    +A+ +     WRWL    ++P F+  +   F+PESPR+L ++GRI +A  
Sbjct: 225 FSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALK 281

Query: 130 ILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF 189
           IL +IA+ N   LP+             E  +      LSS++K          SFL LF
Sbjct: 282 ILQRIAKINGKKLPA-------------EVLSLSLEKDLSSSKK--------QYSFLDLF 320

Query: 190 -SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVF 248
            +P   KTT+ L +L+F  +F YYG+VL    L G                  ++Y+++F
Sbjct: 321 RTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGG------------------NIYLDLF 362

Query: 249 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIF--VCIFLLPLVTLQSNILLTALLSGARM 306
           I+   ELP  L   LL+DR+GR+ +M    +   V + LL  V +    L TAL    + 
Sbjct: 363 ISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKF 422

Query: 307 FSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLL 366
                F +  ++  E+YPT +R+ G GV   + R+G ++ P +               L 
Sbjct: 423 GITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLV--------YLGEKWLF 474

Query: 367 EALIVLSVVVILLIPF-----ETKGKELVNT 392
             L++   + +L         ETKG  L  T
Sbjct: 475 LPLVLFGGLALLAGILTLFLPETKGVPLPET 505

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score =  110 bits (277), Expect = 7e-27
 Identities = 88/353 (24%), Positives = 142/353 (40%), Gaps = 50/353 (14%)

Query: 6   ILGGALVTFVAG-LLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWM 63
           +L  +++ F    LL A + N   LLILR LAG GLG       +   E+ P   RG  +
Sbjct: 84  VLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAV 143

Query: 64  VVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAI-PAFVLLIFIVFMPESPRYLCTKG 122
            +    +  G+     LA  ++P+  WR L  +  I P  +LL+ + F+PES  +L +K 
Sbjct: 144 GLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKR 203

Query: 123 RITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGF 182
             T    I++ IA   Q    S                       L   +     ++S  
Sbjct: 204 PET-VRRIVNAIAPQMQAEAQSA----------------------LPEQKATQGTKRS-- 238

Query: 183 SSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIV----LLASELSGSQSKCSSSILLSENV 238
             F  LF  +  + T+LLW+LYF      Y +      L  EL  S S   ++       
Sbjct: 239 -VFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSL--AATGG---- 291

Query: 239 QDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTI-MFIFVCIFLLPLVTLQSNILL 297
                     + +F  + G +    L DR+G +++  + +   V   L+        +LL
Sbjct: 292 ---------ALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLL 342

Query: 298 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA 350
                 A  F  G            YPT++R+TG G A  +GR+G ++ P++A
Sbjct: 343 LLGAI-AGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILA 394

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  108 bits (272), Expect = 5e-26
 Identities = 87/407 (21%), Positives = 165/407 (40%), Gaps = 64/407 (15%)

Query: 5   SILGGALVTFVAGLLSAFSP--NYISLLILRGLAGAGLGSGHVFFSWFM-EFVPPSNRGK 61
           S+L G ++  +  LL  F+   ++  L++ R + G G+G   V    ++ E  P   RG 
Sbjct: 78  SLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVPMYISEIAPKKLRGA 137

Query: 62  WMVVFSTFWTFGSVSEAALAWIV---MPILTWRWLLALSAIPAFVLLIFIVFMPESPRYL 118
              ++    TFG +  A +   +        WR  L L  +PA +LLI ++F+PESPR+L
Sbjct: 138 LGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFLPESPRWL 197

Query: 119 CTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVR 178
             KG++ +A  +L K+              SD   ++ EE  + E +             
Sbjct: 198 VLKGKLEEARAVLAKL-----------RGVSDVDQEIQEEKDSLERS------------V 234

Query: 179 KSGFSSFLMLFSPRFFKTTILLWVLYFG-------NSFVYYGIVLLASELSGSQSKCSSS 231
           ++  +S+L LF  +  +  +L+ V+          N+  YY   +             + 
Sbjct: 235 EAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFE-----------TL 283

Query: 232 ILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRK-------LSMTIMFIFVCIF 284
            L    +    V +  F+ +F        A  LVDR GR+         M I F+ + + 
Sbjct: 284 GLSDSLLVTIIVGVVNFVFTFI-------AIFLVDRFGRRPLLLLGAAGMAICFLVLGVA 336

Query: 285 LLPLVTLQ--SNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIG 342
           LL +   +    + +  +L     F++G   +  +   E++P  +R     +A A   + 
Sbjct: 337 LLGVAKSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLA 396

Query: 343 GMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKEL 389
             +   +   +  +      ++    L++  + V   +P ETKG+ L
Sbjct: 397 NFLIGFLFPIITGAIGGYVFLVFAGLLVLFILFVFFFVP-ETKGRTL 442

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 89.3 bits (222), Expect = 2e-19
 Identities = 95/416 (22%), Positives = 160/416 (38%), Gaps = 69/416 (16%)

Query: 4   GSILGGALVTFVAGLLS---AFSPNYISLLILRGLAGAGLGSGHVFFSWFM-EFVPPSNR 59
            S+L  AL+  +  +L    AF+ +   L++ R L G G+G        ++ E  P + R
Sbjct: 102 KSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALR 161

Query: 60  GKWMVVFSTFWTFGSVSEAALAWIVMPI-------LTWRWLLALSAIPAFVLLIFIVFMP 112
           G    ++    TFG +    +A+            L WR  L L  IPA +L + + F+P
Sbjct: 162 GALTSLYQLAITFGIL----VAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLP 217

Query: 113 ESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSAR 172
           ESPR+L  KGR+ +A   L ++                      E+    +E  L+   R
Sbjct: 218 ESPRWLVGKGRVEEARKSLARL-----------------RGTSGEDKELLDELELIDIKR 260

Query: 173 KRTTVRKSGFSSFLMLFS------PRFFKTTILLWVLYF--GNSFVYYGIVLLASELSGS 224
                 +S   S+  LFS       R F   +L W   F   N+ +YY   +   E +G 
Sbjct: 261 SIEK--RSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIF--ENAGV 316

Query: 225 QSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRK-----------LS 273
            +  +        +    V    F  +F        A  LVDR GR+           + 
Sbjct: 317 STDHAF-------LVSIIVGAVNFAFTF-------VAIFLVDRFGRRPLLLIGAAGMAIC 362

Query: 274 MTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAG 333
           + ++ I    F+        N+ +  +L     F+MG   +  +   EI+P S+R  G  
Sbjct: 363 LFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGIS 422

Query: 334 VAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKEL 389
           +A A   +   +   +   ++ S       +    L VL ++ +     ETKG+ L
Sbjct: 423 IAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTL 478

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 83.1 bits (205), Expect = 4e-17
 Identities = 61/224 (27%), Positives = 95/224 (42%), Gaps = 21/224 (9%)

Query: 12  VTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFW 70
           V       S+F   Y   L  R L+G G+G    + FS+F EF+    RG+ +     FW
Sbjct: 241 VNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFW 300

Query: 71  TFGSVSEAALAWIVMP-------------ILTWRWLLALSAIPAFVLLIFIVFMPESPRY 117
             G +  AA+AW ++P               +WR  + + A P    +  + FMPESPR+
Sbjct: 301 MIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRF 360

Query: 118 LCTKGRITDAHNILDKIAQFNQTSL--PSGNLTSDGTNDLDEEFSTSEETPLLSSARKRT 175
               G+  +A  IL  I   N  +   P    + +    + +E    E      +  +R 
Sbjct: 361 FLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRC 420

Query: 176 TVRKSG-----FSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGI 214
            VR        + +FL  F+P   + TI L  ++F  SF YYG+
Sbjct: 421 FVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGL 464

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 48/212 (22%), Positives = 89/212 (41%), Gaps = 16/212 (7%)

Query: 171 ARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSS 230
                  +++       LF       T+LLW+ YF    V Y    L + L         
Sbjct: 198 QAAGAGKQRAPVLR--ALFGEGRATATLLLWISYFFTLIVLY---FLLNWLP-------- 244

Query: 231 SILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT 290
           S+L+ + +  +   +     +     G L    L+DR+  +  + +++  +   L  L  
Sbjct: 245 SLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAA 304

Query: 291 LQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA 350
             S   +      A +F +G   +    AP  YPT +R TG G A AVGR+G M  PL+A
Sbjct: 305 APSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLA 364

Query: 351 VGLVTSCHQTAAILLLEA--LIVLSVVVILLI 380
            G + +  ++   ++  +  +I+++ +  LL+
Sbjct: 365 -GQLLALGRSTVGVIGASIPVILVAALAALLL 395

Length = 406

>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional

 Score = 63.6 bits (155), Expect = 7e-11
 Identities = 83/383 (21%), Positives = 149/383 (38%), Gaps = 31/383 (8%)

Query: 10  ALVTFVAG-LLSAFSPNYISLLILR-----GLAGA-GLGSGHVFFSWFMEFVPPSNRGKW 62
           ++V F  G L   F+P Y +L I R     G+AG  G  + +V  SW     P   R K 
Sbjct: 91  SIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESW-----PKHLRNKA 145

Query: 63  MVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKG 122
                + ++ G+V  A +  +V+P+  WR L  +  +P    L     +PE+  +     
Sbjct: 146 SGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHA 205

Query: 123 RITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGF 182
                  ++D + +  +  + +  LT      L   F+ + +   + +      +  + F
Sbjct: 206 GKAPVRTMVDILYR-GEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVL--GLLCAAIF 262

Query: 183 SSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDAS 242
            SF++  S + + T ++L V           +VL A   S        + L ++   D  
Sbjct: 263 ISFMVQSSGKRWPTGVMLMV-----------VVLFAFLYSWPIQALLPTYLKTDLGYDPH 311

Query: 243 VYINV-FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNI--LLTA 299
              NV F + F    G      L D +G + +     +   + ++P+  +      +L  
Sbjct: 312 TVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGL 371

Query: 300 LLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQ 359
           LL   +M   G   +        + T  R+ G G  Y VG +GG + P++   +      
Sbjct: 372 LLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDL 431

Query: 360 TAAILLLEALIVLSVVVILLIPF 382
             A+  L     L+ VVILLI  
Sbjct: 432 GTALASLS--FSLTFVVILLIGL 452

Length = 496

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 61.3 bits (149), Expect = 4e-10
 Identities = 79/327 (24%), Positives = 128/327 (39%), Gaps = 60/327 (18%)

Query: 90  WRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTS 149
           WR L+   A+PA + L F + +PE+PRY       T       + A  + +++    +  
Sbjct: 203 WRILIGFGAVPALLALYFRLTIPETPRY-------TADVAKDVEQAASDMSAVLQVKI-- 253

Query: 150 DGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSF 209
           +   D  E+ ST+ E P  S          S F  F   F  R  K  +     +F    
Sbjct: 254 EAEPDEVEKASTAVEVPKASW---------SDF--FTHFFKWRHGKHLLGTAGSWFLLDI 302

Query: 210 VYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAEL--------PGLLTA 261
            +YG+ L       +Q    S+I  S      + Y  ++ T+   L        PG    
Sbjct: 303 AFYGVNL-------NQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVT 355

Query: 262 ALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAP- 320
             LVD +GRK    + F  + +    L    +++     L+   ++ +     AN F P 
Sbjct: 356 VFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLA---IYVL-AQFFAN-FGPN 410

Query: 321 --------EIYPTSMRSTGAGVAYAVGRIGGMV-----CPLVAVGLVTSCHQTAA----- 362
                   E++PT  RST  G++ A G+ G ++       L   G  T  + T       
Sbjct: 411 ATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHV 470

Query: 363 ILLLEALIVLSVVVILLIPFETKGKEL 389
           + +    + L ++  LLIP ETKGK L
Sbjct: 471 LEIFALFMFLGILFTLLIP-ETKGKSL 496

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 60.0 bits (146), Expect = 6e-10
 Identities = 50/203 (24%), Positives = 82/203 (40%), Gaps = 11/203 (5%)

Query: 180 SGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQ 239
           +     L L      +  +LL + +F  SF YYG++             S+         
Sbjct: 160 AILGLLLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSA--------- 210

Query: 240 DASVYINVFITSFAELPGLLTAALLVDRVGRKLS-MTIMFIFVCIFLLPLVTLQSNILLT 298
            A   + + +     + G L   LL DR+GR+   + I  +   + LL L    S  LL 
Sbjct: 211 -AEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLL 269

Query: 299 ALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH 358
             L          F      A E+ P   R T +G+    G +GG + PL+A  L+ +  
Sbjct: 270 VALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG 329

Query: 359 QTAAILLLEALIVLSVVVILLIP 381
                L+L AL +L+ +++LL+P
Sbjct: 330 YGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 40/139 (28%), Positives = 58/139 (41%), Gaps = 39/139 (28%)

Query: 6   ILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGK---- 61
           I+GG  V    GL S  SP YI+                       E  P   RGK    
Sbjct: 128 IIGGIGV----GLASMLSPMYIA-----------------------EIAPAHIRGKLVSF 160

Query: 62  --WMVVFST----FWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESP 115
             + ++F      F  +        +W+      WR++ A  AIPA + L+ + F+PE+P
Sbjct: 161 NQFAIIFGQLVVYFVNYFIARSGDASWLNT--DGWRYMFASEAIPALLFLMLLYFVPETP 218

Query: 116 RYLCTKGRITDAHNILDKI 134
           RYL ++G+   A  IL KI
Sbjct: 219 RYLMSRGKQEQAEGILRKI 237

Length = 479

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 8/119 (6%)

Query: 262 ALLVDRVGRKLSMTIMFIFVCIFLLPLVTL---QSNILL-TALLSGARMFSMGTFIIANI 317
             L DR+GR+  + I  +   +  +PL+       +  L   L+ G  +           
Sbjct: 276 GALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPMGS 335

Query: 318 FAPEIYPTSMRSTGAGVAYAVGR-IGGMVCPLVAVGLVTSCHQTAAI---LLLEALIVL 372
           F PE++PT +R TGA +AY +   I G   P +A  LV       AI   L   ALI L
Sbjct: 336 FLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALALIGL 394

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 54.1 bits (130), Expect = 6e-08
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 3/103 (2%)

Query: 15  VAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWF-MEFVPPSNRGKWMVVFSTFWTFG 73
              L   F+P YI++ I R + G G+G  +   + + +E  P   R K   +  + +  G
Sbjct: 89  AGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVG 148

Query: 74  SVSEAALAWIVMPI--LTWRWLLALSAIPAFVLLIFIVFMPES 114
           +V  A +  +V+P+    WR L  +S +P    L     +PE+
Sbjct: 149 AVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEA 191

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 53.4 bits (128), Expect = 1e-07
 Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 2/147 (1%)

Query: 243 VYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLS 302
           +Y   F+ + A LPG + +ALL+D++GR   +    +  CI    L    S   + ALL 
Sbjct: 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLC 656

Query: 303 GARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAA 362
                S+  +   ++   E+YP+  R+T  G   A+ +   ++  L+    V    + A 
Sbjct: 657 LFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFV-GITKAAP 715

Query: 363 ILLLEALIVLSVVVILLIPFETKGKEL 389
           IL   A +    ++ L +P +T+G+ L
Sbjct: 716 ILFASAALACGGLLALKLP-DTRGQVL 741

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 1/108 (0%)

Query: 6   ILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHV-FFSWFMEFVPPSNRGKWMV 64
           +L G L+  +  LL AF+ +   LL+ R L G G G+ +    +   E+ PP  RG+ + 
Sbjct: 67  LLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALG 126

Query: 65  VFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMP 112
           +FS  +  G++    L  ++   L WRWL  + AI   +L + ++F+ 
Sbjct: 127 LFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 54/344 (15%), Positives = 103/344 (29%), Gaps = 68/344 (19%)

Query: 6   ILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMV 64
           +L G L+  +  LL  F+ +   LL+LR L G G G+      +   ++ PP  RG+ + 
Sbjct: 65  LLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALG 124

Query: 65  VFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRI 124
           + S  +  G+     L  ++  +  WR    + AI A +  +    +             
Sbjct: 125 LLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALL------------- 171

Query: 125 TDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSS 184
                                                    P     +           +
Sbjct: 172 ------------------------------------LPRPPPESKRPKPAEEAPAPLVPA 195

Query: 185 FLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVY 244
           + +L         + L +  F    +   + L    L                +      
Sbjct: 196 WKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVL---------------GLSALLAG 240

Query: 245 INVFITSFAELPGLLTAALLVDRVGRKLSMTIMF---IFVCIFLLPLVTLQSNILLTALL 301
           + + +       G L    L DR+GR+  + +     I   + L  L   +S++ L   L
Sbjct: 241 LLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVAL 300

Query: 302 SGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMV 345
                 +   F   N    ++ P   R T +G+    G +GG +
Sbjct: 301 LLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGAL 344

Length = 346

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 50/230 (21%), Positives = 91/230 (39%), Gaps = 21/230 (9%)

Query: 163 EETPLLSSARKRTTVRKSGFSSFLMLFS-PRFFKTTILLWVLY--FGNSFVYYGIVLLAS 219
           EE  L    +   +       S   LF+  +F  T  +  VL+  FG ++  +G  LL +
Sbjct: 199 EEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFG--LLPT 256

Query: 220 ELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFI 279
            L+G            E      V   +   +F  + G +   L  DR+G K + +I  +
Sbjct: 257 YLAG------------EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLL 304

Query: 280 FVCIFLLPL--VTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYA 337
              +F+ PL  +   + +LL A L G    ++G   +   F  + +P  +R  G G+ Y 
Sbjct: 305 MSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYN 364

Query: 338 VGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGK 387
           +    G    + A  L  +    AA+  + A    +  ++L+I      +
Sbjct: 365 LAATSGTFNSMAATWLGITMGLGAALTFIVAF--WTATILLIIGLSIPDR 412

Length = 426

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 70/355 (19%), Positives = 123/355 (34%), Gaps = 69/355 (19%)

Query: 9   GALVTFVAGLLSAFSPNYISLLILRGLAG--AGLG---SGHVFFSWFMEFVPPSNRGKWM 63
           G ++  +  L   FS +   +  L  L G   G+G    G     WF      S RG W+
Sbjct: 66  GLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWF----SRSERGTWV 121

Query: 64  VVFSTFWTFGSVSEAALAWIVMPIL-TWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTK 121
             ++     G      L    +  L +W W+  +  I A ++ LI  + + +SP+     
Sbjct: 122 SFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQ----- 176

Query: 122 GRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSG 181
                                      S G    +E    +EE    +  ++    +K  
Sbjct: 177 ---------------------------SCGLPPAEEMP--NEEPDGDAEKKEEELTKKQI 207

Query: 182 FSSFLMLFSPRFFKTTILLWVLYFGNSFVYY--GIVLLASELSGSQSKCSSSILLSENVQ 239
           F  +++L          +LW +  G  FVY     +L  S L  +Q K  S         
Sbjct: 208 FLQYVLL--------NKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKE------- 252

Query: 240 DASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTA 299
            AS    ++      L G L A  L D++       +   F+ + ++ L+    N     
Sbjct: 253 KASWAFTLY--ELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANP 310

Query: 300 LLSGARMFSMGTFI-----IANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLV 349
           L+    +F++G  +     +  + A E+ P     T AG       +GG++  L 
Sbjct: 311 LMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLP 365

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 36/182 (19%), Positives = 62/182 (34%), Gaps = 8/182 (4%)

Query: 200 LWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLL 259
           L +L+ G         LL+             +     +  +   + V   S     G L
Sbjct: 1   LLLLFLGFFLSGLDRGLLSP--------ALPLLAEDLGLSASQAGLIVSAFSLGYALGSL 52

Query: 260 TAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFA 319
            A  L DR GR+  + +  +   +  L L    S  LL        +     +  A    
Sbjct: 53  LAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALI 112

Query: 320 PEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILL 379
            E +P   R    G+  A   +G ++ PL+   L  S       L+L  L +L  +++L 
Sbjct: 113 AEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLF 172

Query: 380 IP 381
           + 
Sbjct: 173 LL 174

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 33/142 (23%), Positives = 53/142 (37%)

Query: 247 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARM 306
           +   S         A  L DR GR+  + I  +   + LL L+   S  LL  L     +
Sbjct: 38  LTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGL 97

Query: 307 FSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLL 366
                F  A     + +P   R    G+  A   +G  + PL+   L +     AA L+L
Sbjct: 98  GGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLIL 157

Query: 367 EALIVLSVVVILLIPFETKGKE 388
             L +L+ V+  L+      + 
Sbjct: 158 AILALLAAVLAALLLPRPPPES 179

Length = 346

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 41.8 bits (99), Expect = 5e-04
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 8/114 (7%)

Query: 6   ILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFS----WFMEFVPPSNRGK 61
           +LG   +  V+ LLSA +P++  LL+ R LAG   G   VF+S         VPP  RG+
Sbjct: 81  LLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHG---VFWSIAAALAARLVPPGKRGR 137

Query: 62  WMVVFSTFWTFGSVSEAALAWIVMPILTWRWL-LALSAIPAFVLLIFIVFMPES 114
            + +  T  T  +V    L   +  +  WR   LA++ +    LL+    +P S
Sbjct: 138 ALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLPPS 191

Length = 394

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 1/104 (0%)

Query: 247 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNI-LLTALLSGAR 305
           V  ++   + G      L D +GR+ +     +   + ++P+  + +N+ +L   L   +
Sbjct: 280 VVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQ 339

Query: 306 MFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLV 349
           M   G + I      E +PT  R+ G G  Y +G +GG + P++
Sbjct: 340 MLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPII 383

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 21/152 (13%)

Query: 257 GLLTAALLV------------DRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGA 304
           G++TAAL V            D++GR+ SM        +F +P+++   N+       G 
Sbjct: 283 GIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGL 342

Query: 305 RMFSMGTFI------IANIFAPEIYPTSMRSTGAGVAYAVGR-IGGMVCPLVAVGLVTSC 357
            M ++   I      I+ I   E++P  +R+ G G++YAV   + G     VA+ L +  
Sbjct: 343 VMCAL--LIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIG 400

Query: 358 HQTAAILLLEALIVLSVVVILLIPFETKGKEL 389
            +TA    +  + V++ +V L++  + KG  L
Sbjct: 401 METAFFWYVTLMAVVAFLVSLMLHRKGKGMRL 432

Length = 432

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 6/113 (5%)

Query: 6   ILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLG-SGHVFFSWFMEFVPPSNRGKWMV 64
           +L G  +  ++  + A S N   L+I R L G G   +     +   +  PP  RG  + 
Sbjct: 31  LLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALG 90

Query: 65  VFSTFWTFGSVSEAALAWIVMPILTWRWL---LALSAIPAFVLLIFIVFMPES 114
           + S     G +    L  ++   L WR     LA+ A+ AF+LL F   +PE+
Sbjct: 91  LMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAF--LLPET 141

Length = 141

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	406
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	100.0
KOG0569	485	consensus Permease of the major facilitator superf	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
TIGR00898	505	2A0119 cation transport protein.	100.0
KOG0254	513	consensus Predicted transporter (major facilitator	100.0
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	100.0
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	100.0
PRK09952	438	shikimate transporter; Provisional	99.97
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.97
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.97
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.96
PRK15075	434	citrate-proton symporter; Provisional	99.95
PRK12307	426	putative sialic acid transporter; Provisional	99.95
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.94
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.94
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.94
TIGR00891	405	2A0112 putative sialic acid transporter.	99.93
TIGR00895	398	2A0115 benzoate transport.	99.93
PRK11663	434	regulatory protein UhpC; Provisional	99.93
TIGR00893	399	2A0114 d-galactonate transporter.	99.93
PRK10489	417	enterobactin exporter EntS; Provisional	99.92
PRK03893	496	putative sialic acid transporter; Provisional	99.92
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.91
PRK03545	390	putative arabinose transporter; Provisional	99.91
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.91
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.91
PRK09705	393	cynX putative cyanate transporter; Provisional	99.91
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.9
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.9
PRK05122	399	major facilitator superfamily transporter; Provisi	99.9
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.9
PLN00028	476	nitrate transmembrane transporter; Provisional	99.9
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.89
PRK03699	394	putative transporter; Provisional	99.89
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.88
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.88
PRK11010	491	ampG muropeptide transporter; Validated	99.88
TIGR00900	365	2A0121 H+ Antiporter protein.	99.87
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.87
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.87
PRK12382	392	putative transporter; Provisional	99.87
PRK09874	408	drug efflux system protein MdtG; Provisional	99.86
PRK10091	382	MFS transport protein AraJ; Provisional	99.86
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.85
PRK10504	471	putative transporter; Provisional	99.85
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.85
PRK15011	393	sugar efflux transporter B; Provisional	99.85
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.85
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.84
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.84
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.84
PRK11043	401	putative transporter; Provisional	99.84
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.84
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.84
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.84
KOG2533	495	consensus Permease of the major facilitator superf	99.83
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.83
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.82
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.81
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.8
KOG2532	466	consensus Permease of the major facilitator superf	99.8
PRK03633	381	putative MFS family transporter protein; Provision	99.8
TIGR00901	356	2A0125 AmpG-related permease.	99.8
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.79
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.79
PRK11902	402	ampG muropeptide transporter; Reviewed	99.79
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.79
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.77
PRK10133	438	L-fucose transporter; Provisional	99.76
PRK10054	395	putative transporter; Provisional	99.75
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.75
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.75
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.75
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.74
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.73
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.71
PRK09528	420	lacY galactoside permease; Reviewed	99.71
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.71
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.68
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.68
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.65
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.63
PTZ00207	591	hypothetical protein; Provisional	99.62
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.62
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.62
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.62
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.6
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.6
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.59
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.58
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.53
KOG2615	451	consensus Permease of the major facilitator superf	99.53
TIGR00805	633	oat sodium-independent organic anion transporter.	99.49
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.44
PRK09669	444	putative symporter YagG; Provisional	99.43
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.43
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.42
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.41
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.4
PRK11462	460	putative transporter; Provisional	99.39
PF13347	428	MFS_2: MFS/sugar transport protein	99.37
PRK10429	473	melibiose:sodium symporter; Provisional	99.36
PRK10642	490	proline/glycine betaine transporter; Provisional	99.35
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.33
PLN00028	476	nitrate transmembrane transporter; Provisional	99.26
COG2211	467	MelB Na+/melibiose symporter and related transport	99.25
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.24
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.24
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.2
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.19
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.19
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.18
TIGR00895	398	2A0115 benzoate transport.	99.18
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.18
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.17
PRK11663	434	regulatory protein UhpC; Provisional	99.15
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.15
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.15
TIGR00891	405	2A0112 putative sialic acid transporter.	99.14
TIGR00893	399	2A0114 d-galactonate transporter.	99.14
PRK10054	395	putative transporter; Provisional	99.13
PRK10504	471	putative transporter; Provisional	99.12
PRK03699	394	putative transporter; Provisional	99.12
PRK12307	426	putative sialic acid transporter; Provisional	99.12
PRK03893	496	putative sialic acid transporter; Provisional	99.11
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.11
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.11
TIGR00900	365	2A0121 H+ Antiporter protein.	99.09
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.08
PRK03545	390	putative arabinose transporter; Provisional	99.08
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.08
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.07
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.07
PRK09848	448	glucuronide transporter; Provisional	99.06
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.05
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.03
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.03
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.02
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.01
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.99
PRK10091	382	MFS transport protein AraJ; Provisional	98.98
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.98
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.98
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.96
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.96
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.95
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.95
PRK09874	408	drug efflux system protein MdtG; Provisional	98.95
KOG2563	480	consensus Permease of the major facilitator superf	98.94
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.94
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.93
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.92
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.92
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.9
PRK11043	401	putative transporter; Provisional	98.89
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.86
PRK10489	417	enterobactin exporter EntS; Provisional	98.84
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.84
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.83
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.82
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.82
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.8
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.79
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.79
PRK15075	434	citrate-proton symporter; Provisional	98.78
TIGR00898	505	2A0119 cation transport protein.	98.77
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.77
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.75
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.75
PRK03633	381	putative MFS family transporter protein; Provision	98.74
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.73
PRK05122	399	major facilitator superfamily transporter; Provisi	98.71
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.71
PRK09952	438	shikimate transporter; Provisional	98.7
PRK09705	393	cynX putative cyanate transporter; Provisional	98.68
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.67
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.65
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.64
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.63
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.62
PRK10133	438	L-fucose transporter; Provisional	98.62
PRK12382	392	putative transporter; Provisional	98.62
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.6
KOG2615	451	consensus Permease of the major facilitator superf	98.59
PRK09528	420	lacY galactoside permease; Reviewed	98.58
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.58
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.57
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.56
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.56
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.54
PRK11010	491	ampG muropeptide transporter; Validated	98.53
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.51
PTZ00207	591	hypothetical protein; Provisional	98.5
PRK15011	393	sugar efflux transporter B; Provisional	98.49
TIGR00901	356	2A0125 AmpG-related permease.	98.48
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.47
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.44
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.42
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.41
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.39
KOG0254	513	consensus Predicted transporter (major facilitator	98.36
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.35
KOG0569	485	consensus Permease of the major facilitator superf	98.33
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.31
PRK11902	402	ampG muropeptide transporter; Reviewed	98.26
TIGR00805	633	oat sodium-independent organic anion transporter.	98.19
KOG2532	466	consensus Permease of the major facilitator superf	98.12
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.07
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.01
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.98
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	97.96
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.93
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.92
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.92
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.88
KOG2533	495	consensus Permease of the major facilitator superf	97.84
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	97.84
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.82
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.81
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.78
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.74
PRK09669	444	putative symporter YagG; Provisional	97.71
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.7
KOG3626	735	consensus Organic anion transporter [Secondary met	97.65
KOG3810	433	consensus Micronutrient transporters (folate trans	97.52
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.52
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.52
PF13347	428	MFS_2: MFS/sugar transport protein	97.49
PRK11462	460	putative transporter; Provisional	97.49
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	97.44
PRK10429	473	melibiose:sodium symporter; Provisional	97.43
KOG3762	618	consensus Predicted transporter [General function	97.38
COG0477	338	ProP Permeases of the major facilitator superfamil	97.26
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.15
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	97.11
COG2211	467	MelB Na+/melibiose symporter and related transport	97.1
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	96.96
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	96.94
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.87
PRK09848	448	glucuronide transporter; Provisional	96.86
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.79
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.66
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	96.62
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.58
KOG2563	480	consensus Permease of the major facilitator superf	96.49
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	96.36
KOG3762	618	consensus Predicted transporter [General function	95.98
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	95.73
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	95.58
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	95.47
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	95.42
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	94.88
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	94.64
COG0477	338	ProP Permeases of the major facilitator superfamil	94.45
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	94.39
COG2270	438	Permeases of the major facilitator superfamily [Ge	94.15
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	93.91
PF12832	77	MFS_1_like: MFS_1 like family	91.26
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	89.67
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	87.76
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	87.59
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	86.56
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	85.94
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	84.15
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	83.75
KOG0637	498	consensus Sucrose transporter and related proteins	83.05
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	82.1

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=1.9e-51  Score=363.72  Aligned_cols=378  Identities=38%  Similarity=0.612  Sum_probs=315.6

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcchhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHh
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAAL   80 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l   80 (406)
                      |||+.+..+.+...+...+.+.++|+..+.++|.+.|+|.|+.++..++..|+.|..+|+..+-.. .+|.+|.+....+
T Consensus       141 grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~l  219 (528)
T KOG0253|consen  141 GRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALL  219 (528)
T ss_pred             hcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHH
Confidence            699999999999999999999999999999999999999999888888899999999999988777 9999999999999


Q ss_pred             hHHhcccchhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCcccccc
Q 015488           81 AWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFS  160 (406)
Q Consensus        81 ~~~~~~~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (406)
                      ++..+...||||.......|..++..+.+++||||||++.||+.+||.+.++|++++|+...|...+....+++.+++..
T Consensus       220 aw~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~  299 (528)
T KOG0253|consen  220 AWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEES  299 (528)
T ss_pred             HHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhh
Confidence            99999999999998888899999888999999999999999999999999999999999888766554433333322211


Q ss_pred             cCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccc------cc
Q 015488          161 TSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSI------LL  234 (406)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~  234 (406)
                      +.++        .+.+..|+......++++|+++|+++++|.+|++|.+.|||..+++..+......|....      ..
T Consensus       300 ~~~~--------~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e  371 (528)
T KOG0253|consen  300 DLDD--------SKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELE  371 (528)
T ss_pred             chhh--------hhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHH
Confidence            1111        011112223335668899999999999999999999999999998887765433222111      11


Q ss_pred             c---cCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhh
Q 015488          235 S---ENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGT  311 (406)
Q Consensus       235 ~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (406)
                      .   -......-|.+.++.++.++||.++.++++||+|||+.+..+++++++++++.....+.....++++...+|+.+.
T Consensus       372 ~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~  451 (528)
T KOG0253|consen  372 TRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGA  451 (528)
T ss_pred             hhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhch
Confidence            1   0112234588999999999999999999999999999999999999999887776555555666777888889999


Q ss_pred             hhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccCCccc
Q 015488          312 FIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKEL  389 (406)
Q Consensus       312 ~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~  389 (406)
                      +...|+|++|.|||.+|++|+|.+++.+|+|++++|++.  +........+..+++.++++++++..++|-|||||.+
T Consensus       452 fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  452 FQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             heEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            999999999999999999999999999999999999997  4444455678899999999999999999999999975

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=9.6e-42  Score=323.38  Aligned_cols=359  Identities=22%  Similarity=0.340  Sum_probs=267.9

Q ss_pred             CcchhhHHHHHHHHHHHHHHh---hcccHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSA---FSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVS   76 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~---~a~~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l   76 (406)
                      |||+++.++.++..+++.++.   .++++++++++|++.|+..|... ....|+.|++|++.||....+.+.+..+|.++
T Consensus        88 GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll  167 (485)
T KOG0569|consen   88 GRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILL  167 (485)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHH
Confidence            799999999999988887665   55789999999999999998875 45668999999999999999999999999999


Q ss_pred             HHHhhH--HhcccchhHHHHHHhhHHHHHHHHHHHhccCCcchhhc-cCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCC
Q 015488           77 EAALAW--IVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCT-KGRITDAHNILDKIAQFNQTSLPSGNLTSDGTN  153 (406)
Q Consensus        77 ~~~l~~--~~~~~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  153 (406)
                      +..++.  .+++...|++++....+|+++.++...++|||||||.. |||.+||++.+++++..++++.           
T Consensus       168 ~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~-----------  236 (485)
T KOG0569|consen  168 GQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEA-----------  236 (485)
T ss_pred             HHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchh-----------
Confidence            977664  35677789999999999999999999999999999998 8999999999999986443211           


Q ss_pred             CcccccccCCccccchhhhccccccccccchhhhcc-ChhhHHHHHHHHHHHHH------HHHHHHHHHHHHHhhhccCC
Q 015488          154 DLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFG------NSFVYYGIVLLASELSGSQS  226 (406)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~  226 (406)
                      +.+++.++.+++        +.  .+.+..++.+++ ++++|+...+...+.+.      +...+|+..++...     +
T Consensus       237 ~~e~~~~e~~~~--------~~--~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~a-----G  301 (485)
T KOG0569|consen  237 EIEEMLREIEEE--------EL--EKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTA-----G  301 (485)
T ss_pred             HHHHHHHHHHHh--------cc--ccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHc-----C
Confidence            000000000000        00  001112344555 45666665554444443      33456666655421     0


Q ss_pred             CCCcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh---hhh---hHHH---
Q 015488          227 KCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT---LQS---NILL---  297 (406)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~---~~~---~~~~---  297 (406)
                                -..+...+ .....+.+.++.++++.++.||.|||++++.+...+.++.+.+..   ..+   .+..   
T Consensus       302 ----------~~~~~a~~-an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~  370 (485)
T KOG0569|consen  302 ----------FTPEEAQY-ANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLC  370 (485)
T ss_pred             ----------CCHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence                      01112233 344556788999999999999999999999988877766554432   111   1111   


Q ss_pred             -HHHHHHHHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHH
Q 015488          298 -TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVV  376 (406)
Q Consensus       298 -~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~  376 (406)
                       ...+.....+..|+.++.|.+.+|++|++.|+.+.++...+.|+.+++..+.++++.+..+. ..|+++.+.+++..++
T Consensus       371 i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~  449 (485)
T KOG0569|consen  371 IAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIY  449 (485)
T ss_pred             HHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHH
Confidence             12222333456788899999999999999999999999999999999999999988877765 5688999999999999


Q ss_pred             HHhcccccCCccccccccccc
Q 015488          377 ILLIPFETKGKELVNTIDGVS  397 (406)
Q Consensus       377 ~~~~~~et~~~~~~~~~~~~~  397 (406)
                      .+++.||||||+.+|+.++.+
T Consensus       450 ~~~~lPETkgr~~~eI~~~~~  470 (485)
T KOG0569|consen  450 LYRYLPETKGRTPYEIIEELE  470 (485)
T ss_pred             HHHhCcccCCCCHHHHHHHHH
Confidence            999999999999999988744

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=1.8e-41  Score=341.12  Aligned_cols=387  Identities=25%  Similarity=0.412  Sum_probs=276.9

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      |||+.+++++++..++++++++++++..++++|++.|++.|+. ++...++.|++|+++||+..++++.++.+|.++++.
T Consensus       230 GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~  309 (742)
T TIGR01299       230 GRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAA  309 (742)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999999999999999999999999875 456778999999999999999999999999999998


Q ss_pred             hhHHhcc-------------cchhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCC--
Q 015488           80 LAWIVMP-------------ILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPS--  144 (406)
Q Consensus        80 l~~~~~~-------------~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~--  144 (406)
                      +++.+.+             ..+||+++++.++|.++.++.++++||||+|+..++|.+||.+.++++++.|.+....  
T Consensus       310 la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~  389 (742)
T TIGR01299       310 MAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPE  389 (742)
T ss_pred             HHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchh
Confidence            8766543             2479999999999998888888899999999999999999999999998876542110  


Q ss_pred             CCCcCC-CCCC-cccccccCCccc---cchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015488          145 GNLTSD-GTND-LDEEFSTSEETP---LLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLAS  219 (406)
Q Consensus       145 ~~~~~~-~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (406)
                      .....+ .+.. ..++..+.++..   ..+...+........+.++..+++++++++++++|+.|++..+.||++..|.|
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P  469 (742)
T TIGR01299       390 KVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFP  469 (742)
T ss_pred             HHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000000 0000 000000000000   00000000000011122456788999999999999999999999999999998


Q ss_pred             hhhccCC--------------------------------------------------------CCCccccccc-------
Q 015488          220 ELSGSQS--------------------------------------------------------KCSSSILLSE-------  236 (406)
Q Consensus       220 ~l~~~~~--------------------------------------------------------~~~~~~~~~~-------  236 (406)
                      .+....+                                                        .|........       
T Consensus       470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  549 (742)
T TIGR01299       470 DMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNC  549 (742)
T ss_pred             HHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhcc
Confidence            6621100                                                        0000000000       


Q ss_pred             ----------------------------C-------------ccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHH
Q 015488          237 ----------------------------N-------------VQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMT  275 (406)
Q Consensus       237 ----------------------------~-------------~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~  275 (406)
                                                  .             ......+...++.+++.++|.+++++++||+|||++++
T Consensus       550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~  629 (742)
T TIGR01299       550 TFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLA  629 (742)
T ss_pred             chhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence                                        0             00012455667777899999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhh
Q 015488          276 IMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT  355 (406)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~  355 (406)
                      .+.++.+++.+.+....+.....++..+..++..+.++..+.+++|++|++.|++++|+.++.+++|++++|++.+.+.+
T Consensus       630 ~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~  709 (742)
T TIGR01299       630 GSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVG  709 (742)
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88887777665544433222222222233344455677888999999999999999999999999999999999887765


Q ss_pred             hchhhHHHHHHHHHHHHHHHHHHhcccccCCccc
Q 015488          356 SCHQTAAILLLEALIVLSVVVILLIPFETKGKEL  389 (406)
Q Consensus       356 ~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~  389 (406)
                      . +...++++++++.++++++.+++ |||+++.+
T Consensus       710 ~-~~~~pf~i~a~~lll~~ll~~~L-PET~~~~l  741 (742)
T TIGR01299       710 I-TKAAPILFASAALACGGLLALKL-PDTRGQVL  741 (742)
T ss_pred             h-hhHHHHHHHHHHHHHHHHHHHhC-CCCccccc
Confidence            4 34567778888888877777665 79999865

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=2.9e-39  Score=319.26  Aligned_cols=368  Identities=22%  Similarity=0.300  Sum_probs=247.0

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhccc------HHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPN------YISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFG   73 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~------~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G   73 (406)
                      |||+.+..+.++..+++++++++++      +..++++|+++|++.|.. +....+++|++|+++||+.+++.+.+..+|
T Consensus        84 Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g  163 (502)
T TIGR00887        84 GRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFG  163 (502)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHH
Confidence            6999999999999999999998876      789999999999999986 456778999999999999999999999999


Q ss_pred             HHHHHHhhHHhcc-----------------------cchhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChh-hHHH
Q 015488           74 SVSEAALAWIVMP-----------------------ILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRIT-DAHN  129 (406)
Q Consensus        74 ~~l~~~l~~~~~~-----------------------~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~-~a~~  129 (406)
                      .++++.++..+..                       .++||++|.++++|+++.++.++++||||||+..|+|.| ++++
T Consensus       164 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~  243 (502)
T TIGR00887       164 ILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAAS  243 (502)
T ss_pred             HHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHH
Confidence            9999888765421                       247999999999999988888889999999999998875 4666


Q ss_pred             HHHHHHHHcCCCCCCCCCcCCCCCCcccccccCCccccchhhhccccccccccchhhhccC----hhhHHHHHHHHHHHH
Q 015488          130 ILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS----PRFFKTTILLWVLYF  205 (406)
Q Consensus       130 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~  205 (406)
                      .++++.+.+..+   +      .++.++.++ +++          .  .+.   +++++++    +++++.++.++..++
T Consensus       244 ~~~~~~~~~~~~---~------~~~~~~~~~-~~~----------~--~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~  298 (502)
T TIGR00887       244 DMSAVLQVKIEA---E------PDEVEKAST-AVE----------V--PKA---SWSDFFTHFFKWRHGKHLLGTAGSWF  298 (502)
T ss_pred             HHHHHhcccccc---C------cccccchhc-ccc----------c--hhh---hHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            666654321110   0      000000000 000          0  000   1223332    233344444555566


Q ss_pred             HHHHHHHHHHHHHHhhhccCCCCCcccccc-cCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 015488          206 GNSFVYYGIVLLASELSGSQSKCSSSILLS-ENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIF  284 (406)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~  284 (406)
                      .+.+.+|+...+.|.+....+......... ....-.....+..+..++.+++.+++++++||+|||+.++.+..+.+++
T Consensus       299 ~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~  378 (502)
T TIGR00887       299 LLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVL  378 (502)
T ss_pred             HHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHH
Confidence            667778887666655432211110000000 0000001111233444567789999999999999999988776665554


Q ss_pred             HHHHHhhh---h-hHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhc---
Q 015488          285 LLPLVTLQ---S-NILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC---  357 (406)
Q Consensus       285 ~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~---  357 (406)
                      +..+....   + ............++..+..+..+.+++|++|++.|+++.|+.+++++++++++|++.+++.+..   
T Consensus       379 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~  458 (502)
T TIGR00887       379 FFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPT  458 (502)
T ss_pred             HHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccc
Confidence            43332211   1 1111111112222234556678889999999999999999999999999999999998887642   


Q ss_pred             -------hhhHHHHHHHHHHHHHHHHHHhcccccCCcccccccc
Q 015488          358 -------HQTAAILLLEALIVLSVVVILLIPFETKGKELVNTID  394 (406)
Q Consensus       358 -------~~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~~~~~~  394 (406)
                             +....+++++++++++++.. ++.||||+++++|+.+
T Consensus       459 ~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~lpEt~~~~leei~~  501 (502)
T TIGR00887       459 KGYPTGIWMGHVLEIFALFMFLGILFT-LLIPETKGKSLEELSG  501 (502)
T ss_pred             ccccccccchHHHHHHHHHHHHHHHHh-eEeccCCCCCHHhhhC
Confidence                   22346788888888876654 5668999999998754

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=1.4e-36  Score=300.80  Aligned_cols=347  Identities=33%  Similarity=0.589  Sum_probs=262.4

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      |||+.++++.++..++++++++++|++.+++.|++.|++.|.. +....++.|+.|+++|++..++.+.++.+|.++++.
T Consensus       155 Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~  234 (505)
T TIGR00898       155 GRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPL  234 (505)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHH
Confidence            6999999999999999999999999999999999999999885 456778899999999999999999999999999999


Q ss_pred             hhHHhcccchhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 015488           80 LAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEF  159 (406)
Q Consensus        80 l~~~~~~~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (406)
                      +++.+.   +||+.+++.++|.++..+..+++||||+|+..++|.+++.+.+++..+.|+.+.+++.         .+. 
T Consensus       235 ~~~~~~---~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~---------~~~-  301 (505)
T TIGR00898       235 VAYFIP---DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEV---------LSL-  301 (505)
T ss_pred             HHHHhh---HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHH---------Hhh-
Confidence            887764   4999999999998887777788999999999999999999999999887754321100         000 


Q ss_pred             ccCCccccchhhhccccccccccchhhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCc
Q 015488          160 STSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENV  238 (406)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  238 (406)
                       +.+++.      ++   .++ .....+++ +++.++.++..+..++...+.+|+...+.+.+.                
T Consensus       302 -~~~~~~------~~---~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------  354 (505)
T TIGR00898       302 -SLEKDL------SS---SKK-QYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLG----------------  354 (505)
T ss_pred             -hhhhhh------hh---ccC-CCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccC----------------
Confidence             000000      00   000 01233444 566777777777777777788887766544321                


Q ss_pred             cchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHhhhhhhhhh
Q 015488          239 QDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSN--ILLTALLSGARMFSMGTFIIAN  316 (406)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  316 (406)
                        .+.+...++.++..+++.++++++.||+|||+.+..+.++.+++.+.+....+.  ...........++..+.++..+
T Consensus       355 --~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (505)
T TIGR00898       355 --GNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVY  432 (505)
T ss_pred             --CChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence              123555666778889999999999999999999988877766655544432221  2222233333344455667788


Q ss_pred             hhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccCCcccccc
Q 015488          317 IFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNT  392 (406)
Q Consensus       317 ~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~~~~  392 (406)
                      .+.+|++|++.|+++.|+.++++++|++++|++.+ +.+ .+...++.+++++++++++..+++ |||++++++|+
T Consensus       433 ~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~l-pet~~~~l~~t  505 (505)
T TIGR00898       433 LYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE-KWLFLPLVLFGGLALLAGILTLFL-PETKGVPLPET  505 (505)
T ss_pred             HHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-HHHhhHHHHHHHHHHHHHHHHHcC-cCCCCCCCCCC
Confidence            99999999999999999999999999999999887 433 345567888888888887776554 69999999874

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=6.1e-35  Score=288.67  Aligned_cols=359  Identities=24%  Similarity=0.368  Sum_probs=254.9

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      |||++++++.+++.++++++++++|+.+++++|+++|+|.|... +...|.+|++|++.||...+..+..+.+|.+++..
T Consensus       117 GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~  196 (513)
T KOG0254|consen  117 GRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYC  196 (513)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999875 55678999999999999999999999999999977


Q ss_pred             hhHHhccc-chhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 015488           80 LAWIVMPI-LTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEE  158 (406)
Q Consensus        80 l~~~~~~~-~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (406)
                      +.+...+. ++||+++++..+|+++..+..+++||||+||.++||.+++++.+++++..++.+         .+.+.++.
T Consensus       197 ~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~---------~~~~~~~~  267 (513)
T KOG0254|consen  197 INYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPED---------VEVELELL  267 (513)
T ss_pred             HhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcc---------hHHHHHHH
Confidence            77665433 589999999999999987778899999999999999999999999997632111         00011110


Q ss_pred             cccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhccCCCCCccc
Q 015488          159 FSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNS------FVYYGIVLLASELSGSQSKCSSSI  232 (406)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~  232 (406)
                      .    . .......    ..+.+ ..+.+++.|+.+++..+...+...+.      ..||+..++..     .       
T Consensus       268 ~----~-~~~~~~~----~~~~~-~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~-----~-------  325 (513)
T KOG0254|consen  268 K----I-KLLVEAE----VAEGK-ASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKS-----A-------  325 (513)
T ss_pred             H----H-HHHHhhh----ccccc-ccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHh-----c-------
Confidence            0    0 0000000    00000 02334555666776665444433322      23344433221     1       


Q ss_pred             ccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh---hh-h--------hHHHH-H
Q 015488          233 LLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT---LQ-S--------NILLT-A  299 (406)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~---~~-~--------~~~~~-~  299 (406)
                          ...+ +.....++.++..+++++++.++.||+|||+.++.+.....++++.+..   .. .        .+... .
T Consensus       326 ----g~~~-~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (513)
T KOG0254|consen  326 ----GLKS-DTFLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVF  400 (513)
T ss_pred             ----CCCC-chHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHH
Confidence                1111 1144556667778889999999999999999999877766655443321   11 0        11111 1


Q ss_pred             HHHHHHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHH-HHH
Q 015488          300 LLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVV-VIL  378 (406)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~-~~~  378 (406)
                      .+.....+..+..+++|.+.+|+||.+.|+++.+++..++|..+++....++.+....+....|.+++..+.+... .++
T Consensus       401 ~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~  480 (513)
T KOG0254|consen  401 LCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVF  480 (513)
T ss_pred             HHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhe
Confidence            1222333455667889999999999999999999999999998887777766555543224567777777777777 788


Q ss_pred             hcccccCCccccccccc
Q 015488          379 LIPFETKGKELVNTIDG  395 (406)
Q Consensus       379 ~~~~et~~~~~~~~~~~  395 (406)
                      ++.|||||++++|+.+.
T Consensus       481 ~~~pETkg~sleei~~~  497 (513)
T KOG0254|consen  481 FFVPETKGLTLEEINEL  497 (513)
T ss_pred             EEcccCCCCcHHHHHHH
Confidence            88999999999998774

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=1.7e-34  Score=286.84  Aligned_cols=359  Identities=32%  Similarity=0.467  Sum_probs=269.3

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      |||++++.+.++.+++++++++++|++.+++.|+++|++.++. .+...+++|+.++++|+..+++...++..|.+..+.
T Consensus       146 GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~  225 (521)
T KOG0255|consen  146 GRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAG  225 (521)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999999999999999999999998775 466778899999999999999966666666666666


Q ss_pred             hhHHhcccchhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 015488           80 LAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEF  159 (406)
Q Consensus        80 l~~~~~~~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (406)
                      .+++.   .+||+.+++..+|+++.++.+++.||||||+..+||.|+|.+.+++..+.|+.+....+.       .++..
T Consensus       226 ~a~~~---~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~-------~~~~~  295 (521)
T KOG0255|consen  226 AAYIT---RDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKEL-------LRLEL  295 (521)
T ss_pred             HHHHH---hhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHH-------HHHHH
Confidence            66665   389999999999998887777777799999999999999999999999887432211100       00000


Q ss_pred             ccCCccccchhhhccccccccccchhhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCc
Q 015488          160 STSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENV  238 (406)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  238 (406)
                         +.       +........+...+.+++ .|++++.++.+++.++.....||++.+....+                 
T Consensus       296 ---~~-------~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~l-----------------  348 (521)
T KOG0255|consen  296 ---LL-------RPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGL-----------------  348 (521)
T ss_pred             ---Hh-------hHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhc-----------------
Confidence               00       000000001111244444 46688888888889988889999987755432                 


Q ss_pred             cchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh-hhH--HHHHHHHHHHHHhhhhhhhh
Q 015488          239 QDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ-SNI--LLTALLSGARMFSMGTFIIA  315 (406)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~  315 (406)
                       ..+.+.+.........++....+...|+.|||..+..+.+...++++...+.. ...  ..........++....+...
T Consensus       349 -g~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (521)
T KOG0255|consen  349 -GGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLI  427 (521)
T ss_pred             -CchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence             23556666677778899999999999999999999988888777665544322 221  33344444555555566677


Q ss_pred             hhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccCCccccccccc
Q 015488          316 NIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDG  395 (406)
Q Consensus       316 ~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~~~~~~~  395 (406)
                      +.+++|++|+.+|+++.+.++..++++++++|++... ........++++++..+.+.+.+..++.|||++++++|+.++
T Consensus       428 ~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~  506 (521)
T KOG0255|consen  428 FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLL-LRQMFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLD  506 (521)
T ss_pred             HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHH
Confidence            9999999999999999999999999999999988642 222333344445788888888888778899999999999888


Q ss_pred             ccc
Q 015488          396 VSN  398 (406)
Q Consensus       396 ~~~  398 (406)
                      .++
T Consensus       507 ~~~  509 (521)
T KOG0255|consen  507 AEN  509 (521)
T ss_pred             HHh
Confidence            774

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=100.00  E-value=1.2e-41  Score=332.41  Aligned_cols=358  Identities=30%  Similarity=0.503  Sum_probs=250.4

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcc---cHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSP---NYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVS   76 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~---~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l   76 (406)
                      |||++++++.++..++++++++++   |++.+.++|++.|++.|+.. +...|+.|.+|+++||+..++.+.++.+|.++
T Consensus        74 GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~  153 (451)
T PF00083_consen   74 GRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILL  153 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            799999999999999999999999   99999999999999999864 56678899999999999999999999999999


Q ss_pred             HHHhhHHhccc---chhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCC
Q 015488           77 EAALAWIVMPI---LTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTN  153 (406)
Q Consensus        77 ~~~l~~~~~~~---~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  153 (406)
                      +..++......   ++||+.+.+.++|+++..+..+++||||+||.+|+|+|||++.++++++.+..+.           
T Consensus       154 ~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~-----------  222 (451)
T PF00083_consen  154 ASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDE-----------  222 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccceecccccccccccccccccccccccc-----------
Confidence            98887765433   4599999999999988888888999999999999999999999988654321110           


Q ss_pred             CcccccccCCccccchhhhccccccccccchhhhccCh-hhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhccCCCCCcc
Q 015488          154 DLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSP-RFFKTTILLWVLYFGNSF-VYYGIVLLASELSGSQSKCSSS  231 (406)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~  231 (406)
                      +.+++.++.++...          .+   ..+.+++++ +++++....+.......+ .++....+.+.+.....     
T Consensus       223 ~~~~~~~~~~~~~~----------~~---~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~-----  284 (451)
T PF00083_consen  223 EIEEIKAEKKESQE----------SK---ASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAG-----  284 (451)
T ss_pred             cccccccccccccc----------cc---eeeeeccccccccccccccccccccccccccccccccccccccccc-----
Confidence            11111100000000          00   122334432 334444433333222221 11222222222221110     


Q ss_pred             cccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH---h--hhh----hHHHHHHHH
Q 015488          232 ILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV---T--LQS----NILLTALLS  302 (406)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~---~--~~~----~~~~~~~~~  302 (406)
                            . +.+ +....+..+..+++.+++.++.||+|||+.++.+...++++...+.   .  ..+    .........
T Consensus       285 ------~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  356 (451)
T PF00083_consen  285 ------I-SNS-FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLA  356 (451)
T ss_pred             ------c-ccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeee
Confidence                  0 001 2233344466677888888999999999998887776665544332   1  111    111111111


Q ss_pred             H-HHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcc
Q 015488          303 G-ARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIP  381 (406)
Q Consensus       303 ~-~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  381 (406)
                      . ...+..+..+..+.+++|+||++.|+++.|+++++++++++++|++.+++.+..+....+.+++++++++.++.+++.
T Consensus       357 l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~l  436 (451)
T PF00083_consen  357 LFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFL  436 (451)
T ss_pred             eccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEE
Confidence            1 112233556778899999999999999999999999999999999888776655545678888999999999999999


Q ss_pred             cccCCccccccccc
Q 015488          382 FETKGKELVNTIDG  395 (406)
Q Consensus       382 ~et~~~~~~~~~~~  395 (406)
                      |||||++++|++++
T Consensus       437 pET~g~~l~ei~~~  450 (451)
T PF00083_consen  437 PETKGKTLEEIQEM  450 (451)
T ss_pred             eeCCCCCHHHHHhh
Confidence            99999999998764

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=6.8e-32  Score=265.81  Aligned_cols=334  Identities=15%  Similarity=0.174  Sum_probs=216.0

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHH--------HHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYIS--------LLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWT   71 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~--------l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~   71 (406)
                      |||+.+..+.+++.++++++++++|+++        +.++|+++|+|.|+.. +...++.|++|+++||+..++...+..
T Consensus        85 Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~  164 (490)
T PRK10642         85 GRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSI  164 (490)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Confidence            7999999999999999999999999975        8999999999998874 566789999999999999999998888


Q ss_pred             HHHHHHHHhhHHhc--------ccchhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCC
Q 015488           72 FGSVSEAALAWIVM--------PILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLP  143 (406)
Q Consensus        72 ~G~~l~~~l~~~~~--------~~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~  143 (406)
                      +|.++++.+...+.        +.+|||++|++.+++.++.++++..+||||+|+..+++.++..          +    
T Consensus       165 ~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~----------~----  230 (490)
T PRK10642        165 AGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGD----------R----  230 (490)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhc----------c----
Confidence            88888876654332        3579999999988777766777788999999864332211100          0    


Q ss_pred             CCCCcCCCCCCcccccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 015488          144 SGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSG  223 (406)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  223 (406)
                                  ++ ..+.+               +.   .+.+++++ +++.....+...+.....+|+...+.|.+..
T Consensus       231 ------------~~-~~~~~---------------~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~  278 (490)
T PRK10642        231 ------------EG-LQDGP---------------KV---SFKEIATK-HWRSLLTCIGLVIATNVTYYMLLTYMPSYLS  278 (490)
T ss_pred             ------------cc-ccccc---------------cC---CHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        00 00000               00   11122222 2333443334444455667777666665432


Q ss_pred             cCCCCCcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH-HHh-h-hhhHHHHHH
Q 015488          224 SQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLP-LVT-L-QSNILLTAL  300 (406)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~-~~~-~-~~~~~~~~~  300 (406)
                      ...          +..............++.+++.+++++++||+|||+.+..+.+...+.... ... . .+.......
T Consensus       279 ~~~----------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (490)
T PRK10642        279 HNL----------HYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAG  348 (490)
T ss_pred             Hhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            110          011111122233344667788889999999999999887665433322221 111 1 111111111


Q ss_pred             HHHHHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchh-hHHHHHHHHHHHHHHHHHHh
Q 015488          301 LSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQ-TAAILLLEALIVLSVVVILL  379 (406)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~-~~~~~~~~~~~~i~~~~~~~  379 (406)
                      .....++..+..+....+.+|++|++.|+++.|+.++++++++.++|++.+++.+..+. ..++++..+.++++.+..++
T Consensus       349 ~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~  428 (490)
T PRK10642        349 LLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT  428 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence            11111222223345566778999999999999999999999899999998887765432 34445555666666665554


Q ss_pred             cccccCCccccc
Q 015488          380 IPFETKGKELVN  391 (406)
Q Consensus       380 ~~~et~~~~~~~  391 (406)
                       .|||+++.+++
T Consensus       429 -~pes~~~~~~~  439 (490)
T PRK10642        429 -MKETANRPLKG  439 (490)
T ss_pred             -hccccCCCCCC
Confidence             47998877654

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=3e-31  Score=261.00  Aligned_cols=355  Identities=22%  Similarity=0.285  Sum_probs=229.2

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhc------------ccHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFS------------PNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFS   67 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a------------~~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~   67 (406)
                      |||+.++++.+++.++.++++++            +++..++++|+++|++.|... ....++.|++|+++||+.+++.+
T Consensus        83 Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~  162 (479)
T PRK10077         83 GRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQ  162 (479)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHH
Confidence            69999999999999988887763            235778999999999998864 56678999999999999999999


Q ss_pred             HHHHHHHHHHHHhhHHhc--------ccchhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcC
Q 015488           68 TFWTFGSVSEAALAWIVM--------PILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQ  139 (406)
Q Consensus        68 ~~~~~G~~l~~~l~~~~~--------~~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~  139 (406)
                      .+..+|.++++.++..+.        +..+||+.|++.+++.++..+..+++||||+|+..+++.|++++..++..+.++
T Consensus       163 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~  242 (479)
T PRK10077        163 FAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTL  242 (479)
T ss_pred             HHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChh
Confidence            999999999887765442        356999999999888887777778899999999888998888776665432110


Q ss_pred             CCCCCCCCcCCCCCCcccccccCCccccchhhhccccccccccchhhhccChhhHHHHHHH--HHHHHHHHHHHHHHHHH
Q 015488          140 TSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILL--WVLYFGNSFVYYGIVLL  217 (406)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  217 (406)
                      .               ++..++      .....++.  .+.    ....+.  +.......  ....+.+...++...++
T Consensus       243 ~---------------~~~~~~------~~~~~~~~--~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (479)
T PRK10077        243 A---------------TQALQE------IKHSLDHG--RKT----GGKLLM--FGVGVIVIGVMLSVFQQFVGINVVLYY  293 (479)
T ss_pred             H---------------HHHHHH------HHHHHHHh--hhh----hhhhcc--hhHHHHHHHHHHHHHHHHhChhHHHHH
Confidence            0               000000      00000000  000    000000  00011111  11111122222333333


Q ss_pred             HHhhhccCCCCCcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh--hh-h
Q 015488          218 ASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL--QS-N  294 (406)
Q Consensus       218 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~--~~-~  294 (406)
                      .|.+....+           ..............+..+++.+++++++||+|||+.++.+.+...+....+...  .+ .
T Consensus       294 ~p~i~~~~g-----------~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~  362 (479)
T PRK10077        294 APEIFKTLG-----------ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP  362 (479)
T ss_pred             HHHHHHHcC-----------CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcc
Confidence            343321110           001111223344556778899999999999999999988777665544433221  11 1


Q ss_pred             H-HHH-HHHHHHHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHh------hhchhhHHHHHH
Q 015488          295 I-LLT-ALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV------TSCHQTAAILLL  366 (406)
Q Consensus       295 ~-~~~-~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~------~~~~~~~~~~~~  366 (406)
                      . ... .+......+..+..+..+.+.+|++|++.|+++.|+.++++++++++++.+.+.+.      +..+....+.++
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  442 (479)
T PRK10077        363 GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIY  442 (479)
T ss_pred             cHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHH
Confidence            1 111 11111111112223567889999999999999999999999999999988776543      233344567778


Q ss_pred             HHHHHHHHHHHHhcccccCCccccccccc
Q 015488          367 EALIVLSVVVILLIPFETKGKELVNTIDG  395 (406)
Q Consensus       367 ~~~~~i~~~~~~~~~~et~~~~~~~~~~~  395 (406)
                      ++.+++++++.+++.||||+++++|..+.
T Consensus       443 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  471 (479)
T PRK10077        443 GCMGVLAALFMWKFVPETKGKTLEEMEAL  471 (479)
T ss_pred             HHHHHHHHHHHHhccccCCCCCHHHHHHH
Confidence            88888888888888899999999887654

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.8e-34  Score=260.92  Aligned_cols=366  Identities=23%  Similarity=0.328  Sum_probs=256.0

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhccc-------HHHHHHHHHHhhccCCcchh-hHHHHHhhcCCCcchhHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPN-------YISLLILRGLAGAGLGSGHV-FFSWFMEFVPPSNRGKWMVVFSTFWTF   72 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~-------~~~l~~~R~l~G~g~g~~~~-~~~~~~E~~p~~~Rg~~~~~~~~~~~~   72 (406)
                      |||+++-..+++++++++++++...       ..++...|+++|+|+|+.+. ..+..+|.+..++||...+.......+
T Consensus       112 GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~  191 (538)
T KOG0252|consen  112 GRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGF  191 (538)
T ss_pred             cchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecch
Confidence            7999999999999999998887643       46799999999999999864 456789999999999999888888888


Q ss_pred             HHHHHHHhhHHhcc-------c--------chhHHHHHHhhHHHHHHHHHHHhccCCcchhhcc-CChhhHHHHHHHHHH
Q 015488           73 GSVSEAALAWIVMP-------I--------LTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTK-GRITDAHNILDKIAQ  136 (406)
Q Consensus        73 G~~l~~~l~~~~~~-------~--------~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~-~~~~~a~~~l~~~~~  136 (406)
                      |.+.+..++..+..       .        .-||..|.++.+|+++.++.++.||||++|..-+ +|.++|.+   ++  
T Consensus       192 GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~---d~--  266 (538)
T KOG0252|consen  192 GILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAG---DM--  266 (538)
T ss_pred             hHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhh---cc--
Confidence            88888877766421       1        1399999999999999999999999999998433 33333331   11  


Q ss_pred             HcCCCCCCCCCcCCCCCCcccccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015488          137 FNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVL  216 (406)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (406)
                        .++...         +++++++..+..        +  ..++.+..+...+...+-++.+.....||...+.+|+..+
T Consensus       267 --~k~~~~---------~~~~~~~~~~~~--------~--~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL  325 (538)
T KOG0252|consen  267 --KKVLSV---------DIEAESTAESDV--------P--PPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNL  325 (538)
T ss_pred             --cccccc---------ccchhhccccCC--------C--CcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Confidence              111000         111111110000        0  0011111222222222445555667778888888998887


Q ss_pred             HHHhhhccCCCCCcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhh--
Q 015488          217 LASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSN--  294 (406)
Q Consensus       217 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~--  294 (406)
                      +...+....+........  ...-.....+.++..+..+||++++.+++|++|||.+.+.++++..++...+...+++  
T Consensus       326 ~~s~I~~~ig~~~~~~~~--~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~  403 (538)
T KOG0252|consen  326 FQSVIFSAIGVIPSANTY--HELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLE  403 (538)
T ss_pred             HHHHHHHhhccCCCcchH--HHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccccc
Confidence            776665422221111000  0000122345566667788999999999999999999999988888877666543331  


Q ss_pred             --H-HHHHHHHHHHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhh-----hchhhHHHHHH
Q 015488          295 --I-LLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT-----SCHQTAAILLL  366 (406)
Q Consensus       295 --~-~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~-----~~~~~~~~~~~  366 (406)
                        . ..+...+..++...|+....+++.+|.||+++|++..|++.+.|++|++++.+.+.++.+     ..+....++++
T Consensus       404 ~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~  483 (538)
T KOG0252|consen  404 NTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIIL  483 (538)
T ss_pred             ccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHH
Confidence              1 112223334455678888999999999999999999999999999999999999888877     55556678888


Q ss_pred             HHHHHHHHHHHHhcccccCCccccccccc
Q 015488          367 EALIVLSVVVILLIPFETKGKELVNTIDG  395 (406)
Q Consensus       367 ~~~~~i~~~~~~~~~~et~~~~~~~~~~~  395 (406)
                      +.+++++.+..++++ |||+|+++|+.++
T Consensus       484 ~~~~~~gi~~T~l~p-Etk~~~leei~~e  511 (538)
T KOG0252|consen  484 AGCMLLGILFTLLIP-ETKGKSLEEISNE  511 (538)
T ss_pred             HHHHHHhHheeEEee-cccccCHHHhcCh
Confidence            999888877776665 9999999998554

>PRK09952 shikimate transporter; Provisional

Probab=99.97  E-value=2.2e-28  Score=237.51  Aligned_cols=319  Identities=18%  Similarity=0.201  Sum_probs=204.7

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHH--------HHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYI--------SLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWT   71 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~--------~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~   71 (406)
                      |||+.+..+.+++.++++++++++|++        .++++|+++|++.|+.. ....+..|+.|+++||+..+..+.++.
T Consensus        92 Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~  171 (438)
T PRK09952         92 GRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYG  171 (438)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Confidence            799999999999999999999999987        59999999999999874 456788999999999999999999999


Q ss_pred             HHHHHHHHhhHHhc--------ccchhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCC
Q 015488           72 FGSVSEAALAWIVM--------PILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLP  143 (406)
Q Consensus        72 ~G~~l~~~l~~~~~--------~~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~  143 (406)
                      +|.++++.+...+.        ..++||++|++.+++.++..+.+..+||||+|+.++++.++.                
T Consensus       172 ~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~----------------  235 (438)
T PRK09952        172 VGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAA----------------  235 (438)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccc----------------
Confidence            99998877655443        257999999999988877777777899999875332111000                


Q ss_pred             CCCCcCCCCCCcccccccCCccccchhhhccccccccccchhhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015488          144 SGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELS  222 (406)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  222 (406)
                                  ++     + .+                 ....++ +++.   ........+...+.+|....+.+.+.
T Consensus       236 ------------~~-----~-~~-----------------~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~y~  277 (438)
T PRK09952        236 ------------KK-----R-IP-----------------VIEALLRHPGA---FLKIIALRLCELLTMYIVTAFALNYS  277 (438)
T ss_pred             ------------cc-----c-CC-----------------HHHHHHHchHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        00     0 00                 000011 1111   12222233333444555444444332


Q ss_pred             ccCCCCCcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh---hhhhHHHHH
Q 015488          223 GSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT---LQSNILLTA  299 (406)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  299 (406)
                      .+..          +...........+.....+++..+.++++||+|||+.+..+.++..+.......   ..+......
T Consensus       278 ~~~~----------g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (438)
T PRK09952        278 TQNL----------GLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVF  347 (438)
T ss_pred             HHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            1100          001111111222334556778889999999999999887765544433222211   111111111


Q ss_pred             -HHHHHHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHh-HHHHHHHHHHHHHhhhc-h-hhHHHHHHHHHHHHHHH
Q 015488          300 -LLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGR-IGGMVCPLVAVGLVTSC-H-QTAAILLLEALIVLSVV  375 (406)
Q Consensus       300 -~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~-~g~~~~p~~~~~l~~~~-~-~~~~~~~~~~~~~i~~~  375 (406)
                       ......+......+..+.+.+|.+|+++|+++.|+.+.+++ +++.++|.+.+.+.+.. + ...++.+.+++++++.+
T Consensus       348 ~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v  427 (438)
T PRK09952        348 FSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAM  427 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence             11111122223345678889999999999999999998877 78899999999887743 2 23445566666777766


Q ss_pred             HHHhccccc
Q 015488          376 VILLIPFET  384 (406)
Q Consensus       376 ~~~~~~~et  384 (406)
                      ..+.. +||
T Consensus       428 ~~~~~-~~~  435 (438)
T PRK09952        428 TALLM-KDN  435 (438)
T ss_pred             HHHHc-ccc
Confidence            65544 454

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.97  E-value=7.8e-29  Score=243.08  Aligned_cols=364  Identities=21%  Similarity=0.307  Sum_probs=230.5

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcc---cHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSP---NYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVS   76 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~---~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l   76 (406)
                      +||+.++.+.++..++.+++++..   +++.+++.|+++|+|.|... ....++.|++|+++|++.+++.+.+..+|.++
T Consensus        99 grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~  178 (481)
T TIGR00879        99 GRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILV  178 (481)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHH
Confidence            699999999999999998885543   45589999999999988764 45668899999999999999999999999999


Q ss_pred             HHHhh---HHhcccchhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCC
Q 015488           77 EAALA---WIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTN  153 (406)
Q Consensus        77 ~~~l~---~~~~~~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  153 (406)
                      ++.++   ....+..+||+.|++.+++.++..+..+++||+|+++..+++.+++.+..++..+.+..+           .
T Consensus       179 ~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~  247 (481)
T TIGR00879       179 AYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGED-----------K  247 (481)
T ss_pred             HHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCc-----------H
Confidence            99988   555567799999999877777777777889999999888877777665554432211000           0


Q ss_pred             CcccccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccc
Q 015488          154 DLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSIL  233 (406)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  233 (406)
                      +..+.....+     ..........+.....+...+++..++......+.++...........+.+.+....+       
T Consensus       248 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------  315 (481)
T TIGR00879       248 ELLDELELID-----IKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAG-------  315 (481)
T ss_pred             HHHHHHHHHH-----HHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcC-------
Confidence            0000000000     0000000000011111111111111122222222222222222222223332221110       


Q ss_pred             cccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH---hh-hh------hHHH-HHHHH
Q 015488          234 LSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV---TL-QS------NILL-TALLS  302 (406)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~---~~-~~------~~~~-~~~~~  302 (406)
                          ..............++.+++.+++++++||+|||+.+..+..+..++...+.   .. ..      .... .....
T Consensus       316 ----~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (481)
T TIGR00879       316 ----VSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILL  391 (481)
T ss_pred             ----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHH
Confidence                0111122334445567788999999999999999988877665555443332   11 11      1111 11111


Q ss_pred             HHHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhccc
Q 015488          303 GARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPF  382 (406)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  382 (406)
                      ....+..+..+..+.+.+|.+|++.|+++.|+.+.+.+++++++|.+.+.+.+..+....|.++++++++++++.+++.|
T Consensus       392 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~  471 (481)
T TIGR00879       392 FIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLP  471 (481)
T ss_pred             HHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecc
Confidence            22222233345567788999999999999999999999999999999888777655556678888888888888888889


Q ss_pred             ccCCccccc
Q 015488          383 ETKGKELVN  391 (406)
Q Consensus       383 et~~~~~~~  391 (406)
                      |+|+++.+|
T Consensus       472 ~~~~~~~~~  480 (481)
T TIGR00879       472 ETKGRTLEE  480 (481)
T ss_pred             cCCCCChhh
Confidence            999887654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.97  E-value=2e-27  Score=230.61  Aligned_cols=317  Identities=19%  Similarity=0.227  Sum_probs=198.5

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHH--------HHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYI--------SLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWT   71 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~--------~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~   71 (406)
                      |||+.+..+.+++.++++++++++|+.        .++++|+++|++.|+. +....++.|+.|+++||+..++.+.+..
T Consensus        91 Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~  170 (432)
T PRK10406         91 GRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLI  170 (432)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHH
Confidence            799999999999999999999999875        5999999999999986 4567789999999999999999888888


Q ss_pred             HHHHHHHHhhHHhc--------ccchhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCC
Q 015488           72 FGSVSEAALAWIVM--------PILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLP  143 (406)
Q Consensus        72 ~G~~l~~~l~~~~~--------~~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~  143 (406)
                      .|.++++.+...+.        +.+|||++|++.+++.++.++.+..+||+|++..++                 ..   
T Consensus       171 ~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~-----------------~~---  230 (432)
T PRK10406        171 GGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRA-----------------LK---  230 (432)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhh-----------------hc---
Confidence            88888776654432        257999999999999888777777889988642100                 00   


Q ss_pred             CCCCcCCCCCCcccccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 015488          144 SGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSG  223 (406)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  223 (406)
                                         +               +.   ++.++++  .++...............+|+...|.|.+..
T Consensus       231 -------------------~---------------~~---~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~  271 (432)
T PRK10406        231 -------------------E---------------AG---SLKGLWR--NRRAFIMVLGFTAAGSLCFYTFTTYMQKYLV  271 (432)
T ss_pred             -------------------c---------------cc---cHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                               0               00   0111121  1111222222223334556666666665432


Q ss_pred             cCCCCCcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH--hh-h-hhHHHHH
Q 015488          224 SQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV--TL-Q-SNILLTA  299 (406)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~--~~-~-~~~~~~~  299 (406)
                      +..          +...........+......++..+.|+++||+|||+.+..+..+..+...++.  .. . +......
T Consensus       272 ~~~----------g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (432)
T PRK10406        272 NTA----------GMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFG  341 (432)
T ss_pred             Hhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            110          01111111122233345566777889999999999887765544333322221  11 1 1111111


Q ss_pred             HHHHHHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhH-HHHHHHHHHHHHhhhchhhH-HHHHHHHHHHHHHHHH
Q 015488          300 LLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRI-GGMVCPLVAVGLVTSCHQTA-AILLLEALIVLSVVVI  377 (406)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~-g~~~~p~~~~~l~~~~~~~~-~~~~~~~~~~i~~~~~  377 (406)
                      +.....+......+..+.+.+|.+|++.|+++.|+++++++. .+...|.+.+ +++..+.+. .+++.+++.+++.+..
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~-~l~~~g~~~~~~~~~~~~~~i~~~~~  420 (432)
T PRK10406        342 LVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVAL-SLKSIGMETAFFWYVTLMAVVAFLVS  420 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHH-HHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence            111111111122345677889999999999999999999886 3445787766 445444333 3444556666666555


Q ss_pred             HhcccccCCccc
Q 015488          378 LLIPFETKGKEL  389 (406)
Q Consensus       378 ~~~~~et~~~~~  389 (406)
                      +++  ++++|+.
T Consensus       421 ~~l--~~~~~~~  430 (432)
T PRK10406        421 LML--HRKGKGM  430 (432)
T ss_pred             HHh--hhccccc
Confidence            543  6667664

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.96  E-value=1.8e-26  Score=218.38  Aligned_cols=307  Identities=16%  Similarity=0.138  Sum_probs=196.6

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcchhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHh
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAAL   80 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l   80 (406)
                      +||+.++........+......++|+..+++.|+++|+|.|........++|+.|+++|++.+++.+.+.++|.++++.+
T Consensus        54 grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~  133 (368)
T TIGR00903        54 FKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAA  133 (368)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57887665554444443333444799999999999999988644445556899999999999999999999999999999


Q ss_pred             hHHhcccchhHHHHHHhhHHHHH-HHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 015488           81 AWIVMPILTWRWLLALSAIPAFV-LLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEF  159 (406)
Q Consensus        81 ~~~~~~~~~Wr~~f~i~~ip~~~-~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (406)
                      +..+.+..|||+.|.+.++++++ ..+.++.+||+|++..   +..+..+                              
T Consensus       134 ~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~---~~~~~~~------------------------------  180 (368)
T TIGR00903       134 GLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAA---EGFGFKD------------------------------  180 (368)
T ss_pred             HHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCcchHH------------------------------
Confidence            99888889999999997766555 4556778999997521   0000000                              


Q ss_pred             ccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCcc
Q 015488          160 STSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQ  239 (406)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  239 (406)
                             ..              +++++++++   +..+.++..++.....+|++..|.|.+..+..           . 
T Consensus       181 -------~~--------------~~~~~ll~~---~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g-----------~-  224 (368)
T TIGR00903       181 -------AV--------------KEFGALAGR---KDLWIIGAILGFGVALFDNLAIWLEAALRPAG-----------L-  224 (368)
T ss_pred             -------HH--------------HHHHHHHcC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------C-
Confidence                   00              011122221   12234455566667778888888887653211           0 


Q ss_pred             chhhHHHHHHHHhhhhHHHHHHHHHHhhhchH---HHHHH-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhh
Q 015488          240 DASVYINVFITSFAELPGLLTAALLVDRVGRK---LSMTI-MFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIA  315 (406)
Q Consensus       240 ~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (406)
                      +..   ......+..+.|.+..++++||..||   +.... ..+..++.........+............++....++..
T Consensus       225 s~~---~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  301 (368)
T TIGR00903       225 EDI---AGDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAII  301 (368)
T ss_pred             ChH---HHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHH
Confidence            001   11122233344555668888887543   33332 222222222222222222222222222333444555667


Q ss_pred             hhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcc
Q 015488          316 NIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIP  381 (406)
Q Consensus       316 ~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  381 (406)
                      +.+.+|++|++.|+++.|+.++.++++++++|.+.+.++.  +....|.++++..+++++...+++
T Consensus       302 ~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~~~~  365 (368)
T TIGR00903       302 MDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIALLLP  365 (368)
T ss_pred             HHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHhCC
Confidence            8899999999999999999999999999999998876663  444567778888888877765433

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.95  E-value=1.1e-24  Score=211.59  Aligned_cols=322  Identities=17%  Similarity=0.230  Sum_probs=190.8

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHH--------HHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYI--------SLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWT   71 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~--------~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~   71 (406)
                      |||+.++.+..++.++++++++++|++        .++++|+++|++.|... ....++.|++|+++||+.+++.+.+.+
T Consensus        84 Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~  163 (434)
T PRK15075         84 GRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQ  163 (434)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHH
Confidence            699999999999999999999999987        47999999999998764 456688999999999999999988888


Q ss_pred             HHHHHHHHhhHHh--------cccchhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCC
Q 015488           72 FGSVSEAALAWIV--------MPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLP  143 (406)
Q Consensus        72 ~G~~l~~~l~~~~--------~~~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~  143 (406)
                      +|..+++.++..+        .+..|||++|++..++..+.++.+...||++++..++++                    
T Consensus       164 ~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~--------------------  223 (434)
T PRK15075        164 VAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKHR--------------------  223 (434)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhc--------------------
Confidence            8877777666554        246799999998765544434444445554332100000                    


Q ss_pred             CCCCcCCCCCCcccccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 015488          144 SGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSG  223 (406)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  223 (406)
                                        .+.+.                 .++..  .+.++.........+.....++....+.|.+..
T Consensus       224 ------------------~~~~~-----------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~  266 (434)
T PRK15075        224 ------------------PSMRE-----------------IFRSL--AANWRIVLAGMLMVAMTTVSFYLITVYTPTFGK  266 (434)
T ss_pred             ------------------ccccc-----------------HHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                              00000                 00000  011111222222223334445555555554432


Q ss_pred             cCCCCCcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH-HH-h-hhhhH-HHHH
Q 015488          224 SQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLP-LV-T-LQSNI-LLTA  299 (406)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~-~~-~-~~~~~-~~~~  299 (406)
                      +.-          +..............++.+++.+++|+++||+|||+.+..+.....+.... .. . ..... ....
T Consensus       267 ~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (434)
T PRK15075        267 TVL----------HLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLA  336 (434)
T ss_pred             Hhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence            110          011111222334455677889999999999999999877654433222211 11 1 11111 1111


Q ss_pred             HHHHHHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhH-HHHHHHHHHHHHhhhchhhH---HHHHHHHHHHHHHH
Q 015488          300 LLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRI-GGMVCPLVAVGLVTSCHQTA---AILLLEALIVLSVV  375 (406)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~-g~~~~p~~~~~l~~~~~~~~---~~~~~~~~~~i~~~  375 (406)
                      ......++.....+..+.+.+|.+|++.|+++.|+.+++++. ++.++|.+.+.+.+..+...   .+++++.++   .+
T Consensus       337 ~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~~~~~~~~~~~~~---~~  413 (434)
T PRK15075        337 VELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKAAPGYWLSFAAVC---GL  413 (434)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHH---HH
Confidence            111111222222344567789999999999999999888886 58889999888877655321   122232222   22


Q ss_pred             HHHhcccccCCcccccc
Q 015488          376 VILLIPFETKGKELVNT  392 (406)
Q Consensus       376 ~~~~~~~et~~~~~~~~  392 (406)
                      +..+...+.++..++..
T Consensus       414 ~~~~~~~~~~~~~~~~~  430 (434)
T PRK15075        414 IATLVLYRRRGARLQAA  430 (434)
T ss_pred             HHHHHhccccchhhhhh
Confidence            23334446666665543

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.95  E-value=7.5e-25  Score=212.36  Aligned_cols=328  Identities=19%  Similarity=0.224  Sum_probs=203.0

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      +||+.+..+.++..++..+++++++++.++++|+++|++.|... ....++.|++|+++|++..++...+..+|.++++.
T Consensus        81 g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~  160 (426)
T PRK12307         81 GRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAY  160 (426)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHH
Confidence            69999999999999999999999999999999999999988754 45667899999999999999999999999999998


Q ss_pred             hhHHhcccchhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 015488           80 LAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEF  159 (406)
Q Consensus        80 l~~~~~~~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (406)
                      +...+.+..+||+.|++..++.++.++.....||+++|...+.+            +   .   .           ++. 
T Consensus       161 l~~~l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~------------~---~---~-----------~~~-  210 (426)
T PRK12307        161 FMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLS------------G---K---G-----------KHS-  210 (426)
T ss_pred             HHHHHcccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhh------------c---c---c-----------ccc-
Confidence            88777777899999998777766655555567888765321100            0   0   0           000 


Q ss_pred             ccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCcc
Q 015488          160 STSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQ  239 (406)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  239 (406)
                       +...+.           .+   ...++.++++..+.........+......+....+.|.+..+.+           ..
T Consensus       211 -~~~~~~-----------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------~~  264 (426)
T PRK12307        211 -QSAWSV-----------FS---LSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEG-----------FD  264 (426)
T ss_pred             -ccchhh-----------hh---HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CC
Confidence             000000           00   01222332222222222222222211122222223333221110           11


Q ss_pred             chhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh-hhhHHHH-HHHHHHHHHhhhhhhhhhh
Q 015488          240 DASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL-QSNILLT-ALLSGARMFSMGTFIIANI  317 (406)
Q Consensus       240 ~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~  317 (406)
                      ............++.+++.++.+++.||+|||+.+..+.+++.+........ .+..... ...+...+...+..+....
T Consensus       265 ~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (426)
T PRK12307        265 TGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPK  344 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHH
Confidence            1111222334456788899999999999999998887766555443332221 1111111 1111211222233445567


Q ss_pred             hcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhH-HHHHHHHHHHHHHHHHHhccccc
Q 015488          318 FAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTA-AILLLEALIVLSVVVILLIPFET  384 (406)
Q Consensus       318 ~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~et  384 (406)
                      +..|.+|++.|+++.|+.++++++++.++|.+.+.+.+..+... .+++.++.++.+.....+..||+
T Consensus       345 ~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (426)
T PRK12307        345 FLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVAFWTATILLIIGLSIPDR  412 (426)
T ss_pred             HHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhccccCChh
Confidence            77899999999999999999999999999999988877655322 23344444444444443444554

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.94  E-value=2.9e-24  Score=206.95  Aligned_cols=315  Identities=23%  Similarity=0.327  Sum_probs=203.6

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      +||+.+..+..+..++.++.++++|++.+++.|++.|++.|... ....++.|+.|+++|++.+++.+.+..+|..+++.
T Consensus        78 g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  157 (406)
T PRK11551         78 GRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASV  157 (406)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999987653 45667899999999999999999999999999999


Q ss_pred             hhHHhcccchhHHHHHHhhHHHHHH-HHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 015488           80 LAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEE  158 (406)
Q Consensus        80 l~~~~~~~~~Wr~~f~i~~ip~~~~-~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (406)
                      ++..+.+..+||+.|++.++..++. .+...++||+|++...+++.++.+                              
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------------------------------  207 (406)
T PRK11551        158 IGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRA------------------------------  207 (406)
T ss_pred             HHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhh------------------------------
Confidence            8877777789999999887655544 445567899987532211000000                              


Q ss_pred             cccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCc
Q 015488          159 FSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENV  238 (406)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  238 (406)
                             ..                 ....++++..+.....+..++.....++....+.|.+..+.+           .
T Consensus       208 -------~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g-----------~  252 (406)
T PRK11551        208 -------PV-----------------LRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQG-----------L  252 (406)
T ss_pred             -------hh-----------------HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------C
Confidence                   00                 000000111111222233333333344444444444432211           1


Q ss_pred             cchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 015488          239 QDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIF  318 (406)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (406)
                      .............++.+++.++.+++.||.|||+.+..+.+...+....+....+............++..+..+..+.+
T Consensus       253 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  332 (406)
T PRK11551        253 SRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYAL  332 (406)
T ss_pred             ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            11111223334456788999999999999999998877554444433332222222222122222222333455667788


Q ss_pred             cccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHH-HHHHHHHHHHHHHHHHhc
Q 015488          319 APEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAA-ILLLEALIVLSVVVILLI  380 (406)
Q Consensus       319 ~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~-~~~~~~~~~i~~~~~~~~  380 (406)
                      .+|.+|++.|+++.|+.+.++++|+.++|.+.+.+.+..+.... +.....+.+++.+..++.
T Consensus       333 ~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        333 APLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             HHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999988775443322 334444445554444444

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.94  E-value=2.5e-24  Score=207.52  Aligned_cols=315  Identities=17%  Similarity=0.227  Sum_probs=193.1

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      |||+.+..+.+++.+++.++++++|++.+++.|+++|++.|... ....++.|++|+++||+.+++++.+..+|.++++.
T Consensus        71 G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~  150 (412)
T TIGR02332        71 GARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLI  150 (412)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999998764 45567899999999999999999999999999999


Q ss_pred             hhHHhcc------cchhHHHHHHhhHHHHHH-HHHHHhccCCcc---hhhccCChhhHHHHHHHHHHHcCCCCCCCCCcC
Q 015488           80 LAWIVMP------ILTWRWLLALSAIPAFVL-LIFIVFMPESPR---YLCTKGRITDAHNILDKIAQFNQTSLPSGNLTS  149 (406)
Q Consensus        80 l~~~~~~------~~~Wr~~f~i~~ip~~~~-~~~~~~~pESp~---~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~  149 (406)
                      ++..+.+      ..|||+.|.+.+++.++. .+.++++||+|+   |+.     +++++..++..+.+..+.       
T Consensus       151 ~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~-----~~~~~~~~~~~~~~~~~~-------  218 (412)
T TIGR02332       151 LSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLD-----EEDKKALKEMIDNDQLTL-------  218 (412)
T ss_pred             HHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCC-----HHHHHHHHHHHHhccccc-------
Confidence            8876642      469999999998887665 455677899995   332     122222211111110000       


Q ss_pred             CCCCCcccccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 015488          150 DGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCS  229 (406)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  229 (406)
                            ++.+++.++.+.            .....++.++++..    +.....++.....++++..|.|.+..+...  
T Consensus       219 ------~~~~~~~~~~~~------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~--  274 (412)
T TIGR02332       219 ------EQPEGAFAHAAM------------PQRSMLREIFTPAI----MLYTLAYFCLTNTLSAINIWTPQILQSFNQ--  274 (412)
T ss_pred             ------cccccccccccc------------cHHHHHHHhcChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--
Confidence                  000000000000            00001222333332    223333444445566666666655432100  


Q ss_pred             cccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 015488          230 SSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSM-TIMFIFVCIFLLPLVTLQSNILLTALLSGARMFS  308 (406)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (406)
                             ...............++.++|.+++++++||++||+.. ........+.+.......+............+..
T Consensus       275 -------~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  347 (412)
T TIGR02332       275 -------GSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGS  347 (412)
T ss_pred             -------CCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence                   00011112233455577888999999999999977643 3322222222221111111111111111111111


Q ss_pred             hhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhch
Q 015488          309 MGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH  358 (406)
Q Consensus       309 ~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~  358 (406)
                      ....+..+....|.+|++.|+++.|+.++.+++|++++|.+.+.+.+..+
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g  397 (412)
T TIGR02332       348 FSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATG  397 (412)
T ss_pred             hhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCC
Confidence            12223445666789999999999999999999999999999887777654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.94  E-value=6.1e-25  Score=200.52  Aligned_cols=327  Identities=20%  Similarity=0.323  Sum_probs=219.5

Q ss_pred             chhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhh
Q 015488            3 EGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALA   81 (406)
Q Consensus         3 r~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~   81 (406)
                      |.-+-++++++.+.+++.+++++...+.++-+++|...|.+ +.....+.-|+|+++||++.++++++.++|..+.++++
T Consensus        94 r~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~  173 (448)
T COG2271          94 RYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVA  173 (448)
T ss_pred             ceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHH
Confidence            44566789999999999999999999999999999988876 45666788999999999999999999999999999988


Q ss_pred             --HHhcccchhHHHHHHhhHHHHHH-HHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 015488           82 --WIVMPILTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEE  158 (406)
Q Consensus        82 --~~~~~~~~Wr~~f~i~~ip~~~~-~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (406)
                        ..+.++.+||..|++.++.+++. ++.++.++|+|+   +.|-.+-     ++.+   +             +..+++
T Consensus       174 ~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq---s~GLP~i-----e~~~---~-------------d~~e~~  229 (448)
T COG2271         174 LLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ---SEGLPPI-----EEYR---G-------------DPLEIY  229 (448)
T ss_pred             HHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcc---ccCCCCH-----HHhh---c-------------Cchhhh
Confidence              66777779999999999887765 667778899997   2222110     0000   0             000000


Q ss_pred             cccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhccCCCCCcccccc
Q 015488          159 FSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVY---YGIVLLASELSGSQSKCSSSILLS  235 (406)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~  235 (406)
                       +++++.+              +. +.++.+.+...+.. .+|.+.+.+.+.|   |++..|.|.+..+.-         
T Consensus       230 -~~~~~~~--------------~l-s~~~i~~~YVL~Nk-~iW~la~a~vfvYivR~gi~dW~p~YL~e~k---------  283 (448)
T COG2271         230 -EEEKENE--------------GL-TAWQIFVKYVLKNK-LIWLLALANVFVYVVRYGINDWGPLYLSEVK---------  283 (448)
T ss_pred             -hhhccCC--------------Cc-cHHHHHHHHHHcCh-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc---------
Confidence             0000000              00 00011101011111 2455555555555   777777776543211         


Q ss_pred             cCccchhhHHHHHHHHhhhhHHHHHHHHHHhhh--chHHHHHHHHHHHH-HHHHHHHhhhh--hHHHHHHHHHHHHHhhh
Q 015488          236 ENVQDASVYINVFITSFAELPGLLTAALLVDRV--GRKLSMTIMFIFVC-IFLLPLVTLQS--NILLTALLSGARMFSMG  310 (406)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~--grR~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  310 (406)
                       +....+......+.-.++++|+++.|+++||+  |||......+.+.. +++..+....+  .....+.++...++..|
T Consensus       284 -~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyG  362 (448)
T COG2271         284 -GFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYG  362 (448)
T ss_pred             -CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhh
Confidence             11112223334455588999999999999997  88877755433333 33333332222  24444555666677788


Q ss_pred             hhhhhhhhcccccCcchhhHHHhHHHHhHhH-HHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhc
Q 015488          311 TFIIANIFAPEIYPTSMRSTGAGVAYAVGRI-GGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI  380 (406)
Q Consensus       311 ~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~-g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  380 (406)
                      +.-+......|..|.+.-++|.|+...++++ |+..+....+++.|..+....|+++.+.++++.+..+..
T Consensus       363 PqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~  433 (448)
T COG2271         363 PQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPV  433 (448)
T ss_pred             HHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence            8878888999999999999999999999999 888888887777676566667777777776666555443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.93  E-value=1e-23  Score=202.59  Aligned_cols=314  Identities=19%  Similarity=0.268  Sum_probs=195.2

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      +||+.++.+.++..++.++++++++++.+++.|++.|++.+... ....++.|+.|+++|++..++.+.+..+|..+++.
T Consensus        75 g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  154 (405)
T TIGR00891        75 GRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQ  154 (405)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999988764 45667899999999999999999999999999999


Q ss_pred             hhHHhcccch--hHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCccc
Q 015488           80 LAWIVMPILT--WRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDE  157 (406)
Q Consensus        80 l~~~~~~~~~--Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (406)
                      ++..+.+..+  ||+.|.+.+++.++.++....+||+|++...+++.++..+..++..+   .+           ...++
T Consensus       155 l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----------~~~~~  220 (405)
T TIGR00891       155 VYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYG---GE-----------HRIAN  220 (405)
T ss_pred             HHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhc---cc-----------hhhhh
Confidence            8887766555  99999998888777766777889998765432222111111111100   00           00000


Q ss_pred             ccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccC
Q 015488          158 EFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSEN  237 (406)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  237 (406)
                         ..+                +....... ..++.+.................++...+.|.+....          .+
T Consensus       221 ---~~~----------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g  270 (405)
T TIGR00891       221 ---IVM----------------TLAAAMVQ-SAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKAD----------LG  270 (405)
T ss_pred             ---hhh----------------hhhHHhhh-hhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH----------hC
Confidence               000                00000000 0011111111122222222222222222222111100          00


Q ss_pred             ccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHhhhhhhhhh
Q 015488          238 VQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV-TLQSNILLTALLSGARMFSMGTFIIAN  316 (406)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (406)
                      ..............++.+++.++.+++.||+|||+.+..+...+.+...... ...+............++..+.++...
T Consensus       271 ~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (405)
T TIGR00891       271 LSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILP  350 (405)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHH
Confidence            1111122233445577889999999999999999988776655433322222 212222111111222233334455667


Q ss_pred             hhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhch
Q 015488          317 IFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH  358 (406)
Q Consensus       317 ~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~  358 (406)
                      .+.+|.+|++.|+++.|+.+.++++++.++|.+.+.+.+..+
T Consensus       351 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g  392 (405)
T TIGR00891       351 KHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD  392 (405)
T ss_pred             HHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            788999999999999999999999999999999998888665

>TIGR00895 2A0115 benzoate transport

Probab=99.93  E-value=2.2e-23  Score=199.75  Aligned_cols=315  Identities=28%  Similarity=0.396  Sum_probs=204.6

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      +||+.++.+.++..++.++.+++++++.+++.|++.|++.|.. +....++.|+.|+++|++..++.+.+..+|..+++.
T Consensus        80 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  159 (398)
T TIGR00895        80 GRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGF  159 (398)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999998875 456678899999999999999999999999999999


Q ss_pred             hhHHhcccchhHHHHHHhhHH-HHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 015488           80 LAWIVMPILTWRWLLALSAIP-AFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEE  158 (406)
Q Consensus        80 l~~~~~~~~~Wr~~f~i~~ip-~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (406)
                      +...+.+..+||+.+++.++. .+...+...++||+|++...+ +.+++.+..++....+..+.+         .+.+++
T Consensus       160 ~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~~~~~  229 (398)
T TIGR00895       160 LAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQ---------SALPEQ  229 (398)
T ss_pred             HHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhcccccc---------cccccc
Confidence            998888888999999988644 444456677899999887655 445555554444332211100         000000


Q ss_pred             cccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCc
Q 015488          159 FSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENV  238 (406)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  238 (406)
                          +++.         ...+   .....+++++..+.....+...+.....++....+.|.+....+           .
T Consensus       230 ----~~~~---------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------~  282 (398)
T TIGR00895       230 ----KATQ---------GTKR---SVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELG-----------F  282 (398)
T ss_pred             ----cccc---------chhh---HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------C
Confidence                0000         0000   01122333444444554555554445555555555553322110           1


Q ss_pred             cchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHhhhhhhhhhh
Q 015488          239 QDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT-LQSNILLTALLSGARMFSMGTFIIANI  317 (406)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (406)
                      .............++.+++.++.+++.||+|||+...... ..++....+.. ..+............++..+..+..+.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  361 (398)
T TIGR00895       283 SLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLL-LGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYA  361 (398)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH-HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111222334445778899999999999999995444333 33332222222 222222222222333333445667788


Q ss_pred             hcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHH
Q 015488          318 FAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGL  353 (406)
Q Consensus       318 ~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l  353 (406)
                      +.+|.+|++.|+++.|+.+.++++|+.++|.+.+++
T Consensus       362 ~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       362 LMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            999999999999999999999999999999987754

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.93  E-value=1.7e-23  Score=203.25  Aligned_cols=339  Identities=16%  Similarity=0.167  Sum_probs=204.6

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      +||+.+.++.++..++.++.++++|++.+.+.|++.|++.|.. +....++.|++|+++||+.+++++.+..+|..+++.
T Consensus        86 g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~  165 (434)
T PRK11663         86 NARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPL  165 (434)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999988765 345667899999999999999999999999999999


Q ss_pred             hhHHhcccchhHHHHHHhhHHHHHH-HHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 015488           80 LAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEE  158 (406)
Q Consensus        80 l~~~~~~~~~Wr~~f~i~~ip~~~~-~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (406)
                      +...+.+..+||+.|.+.+++.++. ++..+++||+|++.......++.                        ++..+. 
T Consensus       166 ~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~------------------------~~~~~~-  220 (434)
T PRK11663        166 VVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWR------------------------HDALEL-  220 (434)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccc------------------------cccccc-
Confidence            8888878889999999988776554 44556789988643111000000                        000000 


Q ss_pred             cccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCc
Q 015488          159 FSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENV  238 (406)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  238 (406)
                        .++.+.      .+. ..++..+. ..+.++.    ...+...++.....+++...|.|.+..+..          +.
T Consensus       221 --~~~~~~------~~~-~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~----------g~  276 (434)
T PRK11663        221 --AQQQEG------AGL-SRKEILTK-YVLLNPY----IWLLSFSYVLVYVVRAAINDWGNLYMSETL----------GV  276 (434)
T ss_pred             --chhccc------cCC-ChhhhHHH-HHhcChH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------CC
Confidence              000000      000 00000000 0111121    112222223333344444445444331110          00


Q ss_pred             cchhhHHHHHHHHhhhhHHHHHHHHHHhhh--chH-HHHHHHHHHHH--HHHHHHHhhhhhHHHHHHHHHHHHHhhhhhh
Q 015488          239 QDASVYINVFITSFAELPGLLTAALLVDRV--GRK-LSMTIMFIFVC--IFLLPLVTLQSNILLTALLSGARMFSMGTFI  313 (406)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~--grR-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (406)
                      .............+++++|.+++++++||+  ++| ...........  .+........+........+...++..++..
T Consensus       277 s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  356 (434)
T PRK11663        277 DLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQM  356 (434)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHH
Confidence            001111223344567889999999999998  333 32222111111  1111111111111111122222222223333


Q ss_pred             hhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccCCcc
Q 015488          314 IANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKE  388 (406)
Q Consensus       314 ~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~~  388 (406)
                      ....+.+|.+|++.|+++.|+.++.+++|+.++|.+.+++.+..+....+.+.+++++++++..++..+++++++
T Consensus       357 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  431 (434)
T PRK11663        357 LIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPRE  431 (434)
T ss_pred             HHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchhc
Confidence            445567899999999999999999999999999999998888766556677778888887777766665655554

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.93  E-value=3.4e-23  Score=197.84  Aligned_cols=330  Identities=16%  Similarity=0.219  Sum_probs=198.4

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      +||+.+..+.++..++..+.++++|++.+++.|++.|++.|.. +....++.|+.|+++|++..++.+....+|.++++.
T Consensus        57 g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  136 (399)
T TIGR00893        57 GARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGP  136 (399)
T ss_pred             CcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHH
Confidence            6899999999999999999999999999999999999998765 455678899999999999999999999999999999


Q ss_pred             hhHHhcccchhHHHHHHhhHHHHHHHH-HHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 015488           80 LAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEE  158 (406)
Q Consensus        80 l~~~~~~~~~Wr~~f~i~~ip~~~~~~-~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (406)
                      ++..+.+..+||+.|.+.+++.++..+ ..+..||+|+..   .+.++.++...      ..+     .    .  .+.+
T Consensus       137 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~------~~~-----~----~--~~~~  196 (399)
T TIGR00893       137 LVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKA---KWLTEEEKYIV------VGG-----L----L--AEQQ  196 (399)
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCcc---ccCCHHHHhhc------chh-----h----c--cccc
Confidence            998887888999999998877666543 445567776521   11111110000      000     0    0  0000


Q ss_pred             cccCCccccchhhhccccccccccchhhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccC
Q 015488          159 FSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSEN  237 (406)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  237 (406)
                        +.+++             +......+..+ +++.+    ......+.....++....+.|.+..+..          +
T Consensus       197 --~~~~~-------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~  247 (399)
T TIGR00893       197 --GKGPS-------------TPKKYQIKELLKDRRVW----GLALGQFLVNIGLGFFLTWFPTYLVQER----------G  247 (399)
T ss_pred             --ccccc-------------CCCccchHHHhcCHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHh----------c
Confidence              00000             00000111222 22222    2222222222333333333332211100          0


Q ss_pred             ccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHH--HHHHHH-H-HHHHHH-HHH-Hhh-hhhHHHHHHHHHHHHHhhh
Q 015488          238 VQDASVYINVFITSFAELPGLLTAALLVDRVGRKL--SMTIMF-I-FVCIFL-LPL-VTL-QSNILLTALLSGARMFSMG  310 (406)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~--~~~~~~-~-~~~~~~-~~~-~~~-~~~~~~~~~~~~~~~~~~~  310 (406)
                      ..............+.++++.++++++.||+|||+  ...... . ...+.. ... ... .+.............+..+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (399)
T TIGR00893       248 LSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG  327 (399)
T ss_pred             ccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh
Confidence            11111122333445677889999999999999996  111111 1 111111 111 111 1111111111122222233


Q ss_pred             hhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhch-hhHHHHHHHHHHHHHHHHHHh
Q 015488          311 TFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-QTAAILLLEALIVLSVVVILL  379 (406)
Q Consensus       311 ~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~i~~~~~~~  379 (406)
                      ..+..+.+.+|.+|++.|+++.|+.+.+.++|+.++|.+.+.+.+..+ ....+.+.+++++++.+..++
T Consensus       328 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  397 (399)
T TIGR00893       328 AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYLL  397 (399)
T ss_pred             hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHHH
Confidence            567788899999999999999999999999999999999998887665 445566666666666555443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.92  E-value=1.8e-22  Score=195.11  Aligned_cols=331  Identities=16%  Similarity=0.073  Sum_probs=208.0

Q ss_pred             CcchhhHHHHHHHHHHHHHHh-----hcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSA-----FSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGS   74 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~-----~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~   74 (406)
                      +||+.+..+..+..++....+     ..++++.+++.|+++|++.|.. +....++.|+.|+++|++..++......+|.
T Consensus        80 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  159 (417)
T PRK10489         80 DRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGS  159 (417)
T ss_pred             CCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHH
Confidence            578888877777666655433     2578899999999999987654 3445677899999999999999999999999


Q ss_pred             HHHHHhhHHhcccchhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCC
Q 015488           75 VSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTND  154 (406)
Q Consensus        75 ~l~~~l~~~~~~~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~  154 (406)
                      .+++.++..+.+..+||+.+.+.++..++..+..+.+||+|+...  ++.+                             
T Consensus       160 ~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~-----------------------------  208 (417)
T PRK10489        160 VISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALPPPPQ--PREH-----------------------------  208 (417)
T ss_pred             HhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCc--cccc-----------------------------
Confidence            999999988877789999999888777766666677787654110  0000                             


Q ss_pred             cccccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccccc
Q 015488          155 LDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILL  234 (406)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  234 (406)
                              +.++.           +   +.++..++++..+...+.....   . ...+...+.|.+..+.         
T Consensus       209 --------~~~~~-----------~---~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~p~~~~~~---------  253 (417)
T PRK10489        209 --------PLRSL-----------L---AGFRFLLASPVVGGIALLGGLL---T-MASAVRVLYPALADEV---------  253 (417)
T ss_pred             --------chHHH-----------H---HHHHHHHcChHHHHHHHHHHHH---H-HHHhHHHhhHHHHHhc---------
Confidence                    00000           0   0111112211111111111111   1 1122222333222110         


Q ss_pred             ccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhh
Q 015488          235 SENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFII  314 (406)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (406)
                       .+..............++.+++.++.+++.||.++|+.+..+..+..+..+.+....+............+......+.
T Consensus       254 -~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  332 (417)
T PRK10489        254 -WQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLL  332 (417)
T ss_pred             -cCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence             0011111112223345677888899999999977777666655444443333322222221111111111211222344


Q ss_pred             hhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccCCcccccccc
Q 015488          315 ANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTID  394 (406)
Q Consensus       315 ~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~~~~~~  394 (406)
                      .+.+..|..|++.|+++.|+.+....+|+.++|.+.+.+.+..+....+...+++.++.+++.....+|+|+++++|+++
T Consensus       333 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (417)
T PRK10489        333 QYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEV  412 (417)
T ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence            56788899999999999999999999999999999998888766666677777777776677777778999999999999


Q ss_pred             cccc
Q 015488          395 GVSN  398 (406)
Q Consensus       395 ~~~~  398 (406)
                      |.+.
T Consensus       413 ~~~~  416 (417)
T PRK10489        413 DASD  416 (417)
T ss_pred             CCCC
Confidence            8765

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.92  E-value=1.7e-22  Score=199.83  Aligned_cols=356  Identities=18%  Similarity=0.244  Sum_probs=202.5

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      +||+.+.++.++..++.++.++++|+..+++.|++.|++.+.. .....++.|..|+++|++..++...+..+|..+++.
T Consensus        83 g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  162 (496)
T PRK03893         83 GRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQ  162 (496)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999988765 445667899999999999999999999999999999


Q ss_pred             hhHHhcccchhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 015488           80 LAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEF  159 (406)
Q Consensus        80 l~~~~~~~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (406)
                      ++..+.+..+||+.|++..++.++.++....+||++++...+++.++.++..+...+.++.             ......
T Consensus       163 ~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~  229 (496)
T PRK03893        163 VYSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHR-------------IINILL  229 (496)
T ss_pred             HHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhH-------------HHHHHH
Confidence            9988888899999999877776666666677899887643322211111111110000000             000000


Q ss_pred             ccCCccccchhhhccccccccccc-------------hhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 015488          160 STSEETPLLSSARKRTTVRKSGFS-------------SFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQS  226 (406)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  226 (406)
                      .   ...............+....             .+.....++.+.....+....+......++...+.|.+.... 
T Consensus       230 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-  305 (496)
T PRK03893        230 T---LAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTD-  305 (496)
T ss_pred             H---HHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhh-
Confidence            0   00000000000000000000             000000000000011111111111111112222333332100 


Q ss_pred             CCCcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh-hhh-HHHHHHHHHH
Q 015488          227 KCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL-QSN-ILLTALLSGA  304 (406)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~  304 (406)
                               .+..............++.+++.+++++++||+|||+.+..+..+..+..+..... ... .......+..
T Consensus       306 ---------~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (496)
T PRK03893        306 ---------LGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQ  376 (496)
T ss_pred             ---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence                     01111222233444557788899999999999999998877655544433322221 111 1111111221


Q ss_pred             HHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHH-HHHHHHHHhccc
Q 015488          305 RMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALI-VLSVVVILLIPF  382 (406)
Q Consensus       305 ~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~  382 (406)
                      .....+.......+.+|.+|.+.|+++.|+.++.+.+|+.++|.+.+.+.+..+....+...+.++ +++.+...+..|
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  455 (496)
T PRK03893        377 QMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTFVVILLIGLDMP  455 (496)
T ss_pred             HHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            122233345556778899999999999999999999999999999988877665444444444333 333333333333

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.91  E-value=8.9e-23  Score=200.05  Aligned_cols=330  Identities=15%  Similarity=0.154  Sum_probs=192.8

Q ss_pred             CcchhhHHHHHHHHHHHHHHhh-----cccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAF-----SPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGS   74 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~-----a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~   74 (406)
                      +||+.+..+.++..++..+.++     ++|++.+++.|+++|++.|.. +....++.|++|+++||+++++++.+.++|.
T Consensus        92 g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~  171 (467)
T PRK09556         92 NTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGG  171 (467)
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhh
Confidence            5888888877777766655544     689999999999999988765 4556688999999999999999999999999


Q ss_pred             HHHHHhhHHhccc---chhHHHHHHhhHHHHHH-HHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCC
Q 015488           75 VSEAALAWIVMPI---LTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSD  150 (406)
Q Consensus        75 ~l~~~l~~~~~~~---~~Wr~~f~i~~ip~~~~-~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~  150 (406)
                      ++++.++..+...   .+||..|.+.+++.++. ++.+++.+|+|+..   +..+ +++..      ++           
T Consensus       172 ~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~---~~~~-~~~~~------~~-----------  230 (467)
T PRK09556        172 AGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEEL---GWGK-AEEIF------GE-----------  230 (467)
T ss_pred             hHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhc---CCCC-hhhcc------cC-----------
Confidence            9998887654432   26999998887776655 34445567776521   1000 00000      00           


Q ss_pred             CCCCcccccccCCccccchhhhccccccccccchhh--hccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 015488          151 GTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFL--MLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKC  228 (406)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  228 (406)
                         ...++.++.++++.        . .+   ..+.  .+.++..    +...+..+.....+++...|.|.+..+.-  
T Consensus       231 ---~~~~~~~~~~~~~~--------~-~~---~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~p~yl~~~~--  289 (467)
T PRK09556        231 ---PISEEDKETESTDM--------T-KW---QIFVEYVLKNPVI----WLLCFANIFLYIVRIGIDNWSPVYAFQEL--  289 (467)
T ss_pred             ---ccchhhhccccccC--------c-HH---HHHHHHHHcChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence               00000000000000        0 00   0000  1122222    22233333344445555555554321110  


Q ss_pred             CcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH-HHhh-hhhHHHHHHHHHHHH
Q 015488          229 SSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLP-LVTL-QSNILLTALLSGARM  306 (406)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~  306 (406)
                              +..............++.++|.+++|+++||+|||+.+........+.... .... .+........+...+
T Consensus       290 --------g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  361 (467)
T PRK09556        290 --------GFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGF  361 (467)
T ss_pred             --------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence                    011111122233445678899999999999999988765543322222111 1111 122122122222222


Q ss_pred             HhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhH-HHHHHHHHHHHHhh------------hchhhHHHHHHHHHHHHH
Q 015488          307 FSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRI-GGMVCPLVAVGLVT------------SCHQTAAILLLEALIVLS  373 (406)
Q Consensus       307 ~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~-g~~~~p~~~~~l~~------------~~~~~~~~~~~~~~~~i~  373 (406)
                      +..+.....+....|.+|++.|+++.|+.+.++++ |++++|.+.+.+.+            ..+....|.+++++++++
T Consensus       362 ~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~  441 (467)
T PRK09556        362 LVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGC  441 (467)
T ss_pred             HHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHH
Confidence            22233333345667999999999999999999997 67899999999888            344445566777777777


Q ss_pred             HHHHHhc
Q 015488          374 VVVILLI  380 (406)
Q Consensus       374 ~~~~~~~  380 (406)
                      .+..+++
T Consensus       442 ~~~~~~~  448 (467)
T PRK09556        442 ICLMAIV  448 (467)
T ss_pred             HHHHHHH
Confidence            6665554

>PRK03545 putative arabinose transporter; Provisional

Probab=99.91  E-value=2.2e-21  Score=185.93  Aligned_cols=305  Identities=15%  Similarity=0.122  Sum_probs=191.5

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      +||+.+..+.++..++++++++++|++.++++|+++|++.+.. +....++.|++|+++|++..++...+..+|..+++.
T Consensus        72 g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~  151 (390)
T PRK03545         72 ERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLP  151 (390)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhh
Confidence            6999999999999999999999999999999999999988765 345667899999999999999999999999999999


Q ss_pred             hhHHhcccchhHHHHHHhhHHHHHHH-HHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 015488           80 LAWIVMPILTWRWLLALSAIPAFVLL-IFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEE  158 (406)
Q Consensus        80 l~~~~~~~~~Wr~~f~i~~ip~~~~~-~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (406)
                      ++..+.+..+||+.|++.++..++.. +.+..+||.|+.    +  ++..+                             
T Consensus       152 l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~----~--~~~~~-----------------------------  196 (390)
T PRK03545        152 LGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE----H--SGSLK-----------------------------  196 (390)
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC----C--cchHH-----------------------------
Confidence            99888888899999999887766653 344456765430    0  00000                             


Q ss_pred             cccCCccccchhhhccccccccccchhhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhccCCCCCccccccc
Q 015488          159 FSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLL-ASELSGSQSKCSSSILLSE  236 (406)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~  236 (406)
                                               +..+.+ +++.+.....    .+.....+++...+ .+.+....           
T Consensus       197 -------------------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~-----------  236 (390)
T PRK03545        197 -------------------------SLPLLFRRPALVSLYLL----TVVVVTAHFTAYSYIEPFVQQVA-----------  236 (390)
T ss_pred             -------------------------HHHHHHhCcHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhc-----------
Confidence                                     000111 1222211111    11111112211111 12221100           


Q ss_pred             CccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhh
Q 015488          237 NVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIAN  316 (406)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (406)
                      +..............++++++.++.+++.||.+||.......+.............+............+...+......
T Consensus       237 g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  316 (390)
T PRK03545        237 GLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQ  316 (390)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHH
Confidence            00011112223344567889999999999999988754443322222222111222222221112121122222223344


Q ss_pred             hhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcc
Q 015488          317 IFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIP  381 (406)
Q Consensus       317 ~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  381 (406)
                      ....|..| +.|+++.|+.+...++|..++|.+.+.+.+..+....+...+.+.+++.++..+..
T Consensus       317 ~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        317 VKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            55667777 57899999999999999999999999888877666667777777777766665554

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.91  E-value=8.4e-22  Score=188.36  Aligned_cols=293  Identities=20%  Similarity=0.263  Sum_probs=183.3

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHH--------HHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYI--------SLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWT   71 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~--------~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~   71 (406)
                      +||+.+..+.++..++..+.++++++.        .+++.|+++|++.|.. +....++.|+.|+++|++..+..+.+..
T Consensus        63 g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  142 (394)
T TIGR00883        63 GRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAP  142 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHH
Confidence            699999999999999999999999976        5899999999998875 4456788999999999999999999999


Q ss_pred             HHHHHHHHhhHHhc--------ccchhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCC
Q 015488           72 FGSVSEAALAWIVM--------PILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLP  143 (406)
Q Consensus        72 ~G~~l~~~l~~~~~--------~~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~  143 (406)
                      +|.++++.++..+.        +.++||+.|++.++..++..+....+||+|++...+++.                +  
T Consensus       143 ~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~--  204 (394)
T TIGR00883       143 VGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKH----------------K--  204 (394)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhcc----------------c--
Confidence            99999888765542        356899999998877766666667788887642110000                0  


Q ss_pred             CCCCcCCCCCCcccccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 015488          144 SGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSG  223 (406)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  223 (406)
                                   +     +++                  +..+.++++ ++.........+.....++....+.|.+..
T Consensus       205 -------------~-----~~~------------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (394)
T TIGR00883       205 -------------K-----KRG------------------PIRETLTKH-RKPFLLGLGLVIATTTTFYLITTYLPTYLT  247 (394)
T ss_pred             -------------c-----ccC------------------CHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         0     000                  000111111 111222222233333334433333333321


Q ss_pred             cCCCCCcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHH-H-HHHhh-hhh-HHHHH
Q 015488          224 SQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFL-L-PLVTL-QSN-ILLTA  299 (406)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~-~-~~~~~-~~~-~~~~~  299 (406)
                      +.          .+..............+...++..+.+++.||+|||+.+.....+..+.. . ..... .+. .....
T Consensus       248 ~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (394)
T TIGR00883       248 QT----------LGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFF  317 (394)
T ss_pred             Hh----------cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            10          00111112223334456678888999999999999997765443333222 1 11111 111 22211


Q ss_pred             HHHHHHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHh-HHHHHHHHHHHHHhhhch
Q 015488          300 LLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGR-IGGMVCPLVAVGLVTSCH  358 (406)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~-~g~~~~p~~~~~l~~~~~  358 (406)
                      ......+......+....+.+|.+|++.|+++.|+.+.++. +|+.++|.+.+.+.+..+
T Consensus       318 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g  377 (394)
T TIGR00883       318 LVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG  377 (394)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence            12222222233456678888999999999999999776654 678899999988877655

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.91  E-value=3.4e-21  Score=178.25  Aligned_cols=307  Identities=20%  Similarity=0.234  Sum_probs=199.5

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      .||+.++....++.++++++++++||++++++|++.|++-|... ....+..+..|+++|+++++....+..++.+++.+
T Consensus        76 ~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvP  155 (394)
T COG2814          76 ERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVP  155 (394)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhcc
Confidence            39999999999999999999999999999999999999998864 45667789999999999999999999999999999


Q ss_pred             hhHHhcccchhHHHHHHhhHHHHHH-HHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 015488           80 LAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEE  158 (406)
Q Consensus        80 l~~~~~~~~~Wr~~f~i~~ip~~~~-~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (406)
                      ++.++.+.+|||..|++.+..+++. +..+..+|  |+-..                     +               ..
T Consensus       156 LGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~---------------------~---------------~~  197 (394)
T COG2814         156 LGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEIS---------------------G---------------SL  197 (394)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCC---------------------C---------------CC
Confidence            9999999999999999988887776 45677888  33000                     0               00


Q ss_pred             cccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCc
Q 015488          159 FSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENV  238 (406)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  238 (406)
                        +.+                 ..+....+.+|+.+.......+.+. ..+..|  .+..|.+.+..           ..
T Consensus       198 --~~~-----------------~~~~~~~l~~p~v~~~l~~t~l~~~-g~F~~f--tYi~P~L~~v~-----------g~  244 (394)
T COG2814         198 --PGP-----------------LRTLLRLLRRPGVLLGLLATFLFMT-GHFALY--TYIRPFLESVA-----------GF  244 (394)
T ss_pred             --Ccc-----------------hhHHHHHhcCchHHHHHHHHHHHHc-chhhhH--HhHHHHHHHcc-----------CC
Confidence              000                 0001222333444433333222222 222222  23344443211           11


Q ss_pred             cchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHhhhhhhhhhh
Q 015488          239 QDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT-LQSNILLTALLSGARMFSMGTFIIANI  317 (406)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (406)
                      ............++++++|.+++|.+.|| +.|+.+........+.+..+.. ..+............+..........+
T Consensus       245 s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~  323 (394)
T COG2814         245 SVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQT  323 (394)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHH
Confidence            12234455666778899999999999999 7777776654444444443333 233322222222221111111122334


Q ss_pred             hcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhc
Q 015488          318 FAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI  380 (406)
Q Consensus       318 ~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  380 (406)
                      ..++ .-++.+..+.++....-++|..++..+.+.+++..+......+-+...+++.+.....
T Consensus       324 ~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~  385 (394)
T COG2814         324 RLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLS  385 (394)
T ss_pred             Hhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence            4455 3357789999999999999999999998888887554444444445555555444433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.91  E-value=3.3e-21  Score=184.72  Aligned_cols=313  Identities=16%  Similarity=0.098  Sum_probs=200.8

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      |||+.+..+.++..++.+.+++++|++.+++.|+++|+|.|... ....++.|+.| ++|+++++.+..+...|..+++.
T Consensus        72 G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~  150 (393)
T PRK09705         72 SERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAA  150 (393)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999988754 34556788887 78999999999999999999988


Q ss_pred             hhHHhcccc-hhHHHHHHhhHHHHHHHHHHHhccC-CcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCccc
Q 015488           80 LAWIVMPIL-TWRWLLALSAIPAFVLLIFIVFMPE-SPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDE  157 (406)
Q Consensus        80 l~~~~~~~~-~Wr~~f~i~~ip~~~~~~~~~~~pE-Sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (406)
                      +...+.+.. +||+.+.+.+++.++..+.++...+ .|+                            ++        .++
T Consensus       151 ~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~--------~~~  194 (393)
T PRK09705        151 ITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREVA----------------------------SS--------HKT  194 (393)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc----------------------------cc--------cCC
Confidence            887766654 8999887766665544433322211 110                            00        000


Q ss_pred             ccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccC
Q 015488          158 EFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSEN  237 (406)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  237 (406)
                           + ..                 ....+++++.+    .+.+.++.....+++...+.|.+..+.+           
T Consensus       195 -----~-~~-----------------~~~~l~~~~~~----~l~~~~~~~~~~~~~~~~~lp~~l~~~g-----------  236 (393)
T PRK09705        195 -----T-TT-----------------PVRVVFTPRAW----TLGVYFGLINGGYASLIAWLPAFYIEIG-----------  236 (393)
T ss_pred             -----C-cC-----------------CcccccCHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------
Confidence                 0 00                 00011122222    1222223334455555555544432211           


Q ss_pred             ccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHhhhhhhhhh
Q 015488          238 VQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT-LQSNILLTALLSGARMFSMGTFIIAN  316 (406)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (406)
                      ..............++.++|.++.+++.||.|||+....+..+..+....+.. ..+......  ....+...+.++...
T Consensus       237 ~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~l~g~g~g~~~~~~~  314 (393)
T PRK09705        237 ASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLWA--MVCGLGLGGAFPLCL  314 (393)
T ss_pred             CChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHHH--HHHHHhccchHHHHH
Confidence            01111122334455778899999999999999998887765554443332222 221111111  111122223334444


Q ss_pred             hhccccc-CcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchh-hHHHHHHHHHHHHHHHHHHhcccccCCcccc
Q 015488          317 IFAPEIY-PTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQ-TAAILLLEALIVLSVVVILLIPFETKGKELV  390 (406)
Q Consensus       317 ~~~~El~-p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~et~~~~~~  390 (406)
                      ....+.+ |++.|+++.|+.+.++++++.++|.+.+++.+..+. ...+.+.++++++..++.+.++|||+++...
T Consensus       315 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK09705        315 LLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLWV  390 (393)
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchhc
Confidence            4445666 468899999999999999999999999998887653 3456666777777777878899999988654

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.90  E-value=2.4e-21  Score=184.10  Aligned_cols=304  Identities=17%  Similarity=0.226  Sum_probs=188.2

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      |||+.++.+.++..++.+++++++|++.+++.|++.|++.|... .......|+.| ++|++..++...+..+|.++++.
T Consensus        66 G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~  144 (377)
T TIGR00890        66 GPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSP  144 (377)
T ss_pred             CccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHH
Confidence            69999999999999999999999999999999999999988653 34456678887 57999999999999999887776


Q ss_pred             hhHHhcccchhHHHHHHhhHHHHHHHH-HHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 015488           80 LAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEE  158 (406)
Q Consensus        80 l~~~~~~~~~Wr~~f~i~~ip~~~~~~-~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (406)
                      +...+.+..+||+.|++.+++.++..+ ..++++|.|+-. .+                  ++           .+.++ 
T Consensus       145 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~------------------~~-----------~~~~~-  193 (377)
T TIGR00890       145 LITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQL-IK------------------TN-----------IEVSV-  193 (377)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhc-cc------------------cC-----------cccch-
Confidence            666666677999999998887766544 344555543200 00                  00           00000 


Q ss_pred             cccCCccccchhhhccccccccccchhhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccC
Q 015488          159 FSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSEN  237 (406)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  237 (406)
                          + +                 .+..+.+ +++.+.    .....+...+.......+.+....+.           .
T Consensus       194 ----~-~-----------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~  236 (377)
T TIGR00890       194 ----K-D-----------------YTVWEMLRTPQFWV----LYLSFFLNAVSGLLLIGLYKPYGQSL-----------G  236 (377)
T ss_pred             ----h-h-----------------hhHHHHHcCccHHH----HHHHHHHHhHHHHHHHHHHHHHHHHc-----------C
Confidence                0 0                 0001111 122221    11111111111111111111111100           0


Q ss_pred             ccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHhhhhhhhh
Q 015488          238 VQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQS--NILLTALLSGARMFSMGTFIIA  315 (406)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  315 (406)
                      ..............+..+++.++.+++.||+|||+.+..+.....+....+....+  ............+......+..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  316 (377)
T TIGR00890       237 LSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLF  316 (377)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhcc
Confidence            11111222334455677889999999999999999887776665554443332221  1111111111122222233445


Q ss_pred             hhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHH
Q 015488          316 NIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLS  373 (406)
Q Consensus       316 ~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~  373 (406)
                      ..+.+|.+|++.|+++.|+.+....+|+.++|.+.+.+.+..+....+.+.+++++++
T Consensus       317 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       317 PSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            6678899999999999999999999999999999988877666555666666665554

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.90  E-value=4.1e-21  Score=187.53  Aligned_cols=336  Identities=16%  Similarity=0.203  Sum_probs=189.8

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhc----ccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFS----PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSV   75 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a----~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~   75 (406)
                      +||+.++.+.++.+++.++.+++    .++..+++.|++.|++.|.. +.....+.|++|+++||+.+++++.+..+|..
T Consensus        91 g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  170 (452)
T PRK11273         91 NPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG  170 (452)
T ss_pred             CCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhh
Confidence            68999999999999998888775    37889999999999988765 33455678999999999999999999998864


Q ss_pred             H-HHHhhHHhcccchhHHHHHHhhHHHHHH-HHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCC
Q 015488           76 S-EAALAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTN  153 (406)
Q Consensus        76 l-~~~l~~~~~~~~~Wr~~f~i~~ip~~~~-~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  153 (406)
                      + ++.+...+....+||+.|++.+++.++. ++..+++||+|+....+   ++++.     .+  +.  ++         
T Consensus       171 ~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~-----~~--~~--~~---------  229 (452)
T PRK11273        171 LPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLP---PIEEY-----KN--DY--PD---------  229 (452)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCC---Chhhh-----hh--cc--cc---------
Confidence            4 4443333333459999999988776664 55667789988742111   11000     00  00  00         


Q ss_pred             CcccccccCCccccchhhhccccccccccchhhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccc
Q 015488          154 DLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSI  232 (406)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  232 (406)
                      +.++  ++.++.+           .++.+  ....+ ++..    +...+..+.....+++...+.|.+..+..      
T Consensus       230 ~~~~--~~~~~~~-----------~~~~~--~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~P~~l~~~~------  284 (452)
T PRK11273        230 DYNE--KHEQELT-----------AKQIF--MQYVLPNKLL----WYIAIANVFVYLLRYGILDWSPTYLKEVK------  284 (452)
T ss_pred             cccc--ccCCCcc-----------HHHHH--HHHHHcChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence            0000  0000000           00000  00111 1211    12222222233344555555554432110      


Q ss_pred             ccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhh--chHHHHHH-HHHHHHHHHHHHHhh-h-hhHHHHHHHHHHHHH
Q 015488          233 LLSENVQDASVYINVFITSFAELPGLLTAALLVDRV--GRKLSMTI-MFIFVCIFLLPLVTL-Q-SNILLTALLSGARMF  307 (406)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~--grR~~~~~-~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~  307 (406)
                          +..............++.+++.+++|+++||+  |||..... ...+..+........ . +..............
T Consensus       285 ----g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  360 (452)
T PRK11273        285 ----HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFL  360 (452)
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHH
Confidence                00001112223344566788999999999999  55543322 111111111111111 1 111111111222122


Q ss_pred             hhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHH-HHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhc-ccccC
Q 015488          308 SMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMV-CPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI-PFETK  385 (406)
Q Consensus       308 ~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~-~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~et~  385 (406)
                      ..+.......+..|.+|++.|+++.|+.+..+++|+.+ +|.+.+.+.+..+....|.+++++++++++....+ .+|+|
T Consensus       361 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  440 (452)
T PRK11273        361 IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR  440 (452)
T ss_pred             HHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            22222333456679999999999999999999998765 68888888887666666777777777776666544 34444


Q ss_pred             C
Q 015488          386 G  386 (406)
Q Consensus       386 ~  386 (406)
                      +
T Consensus       441 ~  441 (452)
T PRK11273        441 H  441 (452)
T ss_pred             h
Confidence            3

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.90  E-value=1.5e-20  Score=180.74  Aligned_cols=311  Identities=15%  Similarity=0.066  Sum_probs=189.4

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhc--------ccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFS--------PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWT   71 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a--------~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~   71 (406)
                      +||+.++.+.++..++++..+++        .++..+++.|+++|++.+.. +....+..|+.|+++|++..++.+.+..
T Consensus        79 g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  158 (399)
T PRK05122         79 GPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATY  158 (399)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhh
Confidence            69999999998888777655443        25778999999999998765 3455678899999999999999999999


Q ss_pred             HHHHHHHHhhHHhcccchhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCC
Q 015488           72 FGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDG  151 (406)
Q Consensus        72 ~G~~l~~~l~~~~~~~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~  151 (406)
                      +|.++++.++..+.+..+||+.+++..+..++..+.....||++.   .++                             
T Consensus       159 ~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----------------------------  206 (399)
T PRK05122        159 GALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLARPRPAVPP---VKG-----------------------------  206 (399)
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCCCC---CCc-----------------------------
Confidence            999999999988888889999988766554443333222233211   000                             


Q ss_pred             CCCcccccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcc
Q 015488          152 TNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSS  231 (406)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  231 (406)
                                 ++.                  +....+ ++.++..... .   ...+.+.....+.+....+.+     
T Consensus       207 -----------~~~------------------~~~~~~-~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~-----  247 (399)
T PRK05122        207 -----------ERL------------------PFRRVL-GRVWPYGMGL-A---LASIGFGTIATFITLYYAARG-----  247 (399)
T ss_pred             -----------cch------------------hHHHHH-HHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHcc-----
Confidence                       000                  000000 0111111111 1   111122222222221111100     


Q ss_pred             cccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhh
Q 015488          232 ILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGT  311 (406)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (406)
                            .....  .......++.+++.+..+++.||+|||+.+..+..+..+....+....+............+.....
T Consensus       248 ------~~~~~--~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~  319 (399)
T PRK05122        248 ------WDGAA--LALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLV  319 (399)
T ss_pred             ------cccch--HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHH
Confidence                  00111  1122334566788899999999999999887766555554443333232222222112222222233


Q ss_pred             hhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccCCccccc
Q 015488          312 FIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVN  391 (406)
Q Consensus       312 ~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~~~  391 (406)
                      ++.......|.+|++.|+++.|+.+....+|+.++|.+.+.+.+..+....+.+.+++++++.+...++. ++++++.+|
T Consensus       320 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  398 (399)
T PRK05122        320 FPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLY-RRAPRAVPE  398 (399)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhc-ccccccCCC
Confidence            4444456678999999999999999999999888888888887766666667777777777776666554 444444443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.90  E-value=3.1e-21  Score=189.19  Aligned_cols=326  Identities=15%  Similarity=0.162  Sum_probs=192.3

Q ss_pred             CcchhhHHHHHHHHHHHHHHhh--cccHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAF--SPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   77 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~--a~~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   77 (406)
                      +||+.+..+.++.+++.+++.+  ..++..+++.|+++|++.|... ....++.|+.|+++|++..++...+..+|.+++
T Consensus       104 g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~  183 (465)
T TIGR00894       104 VFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIF  183 (465)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999888887644  3568899999999999998764 566789999999999999999999999999999


Q ss_pred             HHhhHHhccc-chhHHHHHHhhHHHHHHHH-HHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCc
Q 015488           78 AALAWIVMPI-LTWRWLLALSAIPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDL  155 (406)
Q Consensus        78 ~~l~~~~~~~-~~Wr~~f~i~~ip~~~~~~-~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~  155 (406)
                      +.+...+.+. .+||+.|++.+++.++..+ .+.+.||+|+...   +.++.++  +.+.+..                 
T Consensus       184 ~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~--~~i~~~~-----------------  241 (465)
T TIGR00894       184 LPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHP---CISKFEK--KYINSSL-----------------  241 (465)
T ss_pred             HHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCC---CCCHHHH--HHHHhhc-----------------
Confidence            9998888777 4999999999888777644 4445678886321   1111111  1111000                 


Q ss_pred             ccccccCCccccchhhhccccccccccchhhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccccc
Q 015488          156 DEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILL  234 (406)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  234 (406)
                      +++.++.+              .+.   .+++.+ +++.    ...++..++....++....|.|.+..+..        
T Consensus       242 ~~~~~~~~--------------~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~lp~~l~~~~--------  292 (465)
T TIGR00894       242 QGQKGSTR--------------QSL---PIKAIPKSLPV----WAIWFAIFGHFWLYTILPTYLPTFISWVL--------  292 (465)
T ss_pred             ccccCCCC--------------CCC---CHHHHhcCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence            00000000              000   111222 2222    22333334444445555555554432110        


Q ss_pred             ccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHH--------HHHHHHH--HHHHHHHHh-hhhhHHHHHHHHH
Q 015488          235 SENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSM--------TIMFIFV--CIFLLPLVT-LQSNILLTALLSG  303 (406)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~--------~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~  303 (406)
                        +...........+..++..++.+++|+++||.++|+..        ..+....  .++.+.... ..+.......+..
T Consensus       293 --g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  370 (465)
T TIGR00894       293 --RVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTL  370 (465)
T ss_pred             --CcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence              01111112233344567788999999999998654211        1111111  111111111 1111222222222


Q ss_pred             HHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhc--h-hhHHHHHHHHHHHHHHHHHHhc
Q 015488          304 ARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC--H-QTAAILLLEALIVLSVVVILLI  380 (406)
Q Consensus       304 ~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~--~-~~~~~~~~~~~~~i~~~~~~~~  380 (406)
                      ...+..+.....+....|..|. .++++.|+.+..+.++++++|.+.+.+.+..  + ....+.+.++.++++.++..++
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~  449 (465)
T TIGR00894       371 ANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIF  449 (465)
T ss_pred             HHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence            2222222233344556677776 8999999999999999999999988776542  2 2345666777777776655443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.90  E-value=3.9e-21  Score=188.55  Aligned_cols=317  Identities=13%  Similarity=0.085  Sum_probs=179.3

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcchhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHh
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAAL   80 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l   80 (406)
                      +||+.+..+.++..++.+++++++|+..+++.|++.|++.+.......++.|++|+++||+.+++.+....+|..+++.+
T Consensus        99 G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~  178 (476)
T PLN00028         99 GPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLL  178 (476)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999887543344568899999999999999877666676666554


Q ss_pred             hHHh----cc-----cchhHHHHHHhhHHHHHHHHHHHhccC-CcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCC
Q 015488           81 AWIV----MP-----ILTWRWLLALSAIPAFVLLIFIVFMPE-SPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSD  150 (406)
Q Consensus        81 ~~~~----~~-----~~~Wr~~f~i~~ip~~~~~~~~~~~pE-Sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~  150 (406)
                      ...+    .+     ..+||+.|++.+++.++..+..++++| .|+     ++.++.+       + +            
T Consensus       179 ~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~~-------~-~------------  233 (476)
T PLN00028        179 MPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD-----GNYRELK-------K-S------------  233 (476)
T ss_pred             HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC-----CchhhHH-------h-c------------
Confidence            4322    11     258999999988887766554444443 342     1100000       0 0            


Q ss_pred             CCCCcccccccCCccccchhhhccccccccccchhhh-ccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 015488          151 GTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLM-LFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCS  229 (406)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  229 (406)
                               .+.++...              .+.+.. +.+++    ++.+++.++......++...+.|.+..+.    
T Consensus       234 ---------~~~~~~~~--------------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----  282 (476)
T PLN00028        234 ---------GTMPKDSF--------------SKVLRYGVTNYR----TWILALTYGYSFGVELTMDNIIAEYFYDR----  282 (476)
T ss_pred             ---------CccccccH--------------HHHHHHHHcCch----hHHHHHHHHHHHHHHHHHHhHHHHHHHHh----
Confidence                     00000000              001111 11122    22222222222222233333333222110    


Q ss_pred             cccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHH-------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 015488          230 SSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKL-------SMTIMFIFVCIFLLPLVTLQSNILLTALLS  302 (406)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (406)
                            .+...........+..++.+++.+++|+++||++||.       .......+.++..+.+....+.......+.
T Consensus       283 ------~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~  356 (476)
T PLN00028        283 ------FGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMI  356 (476)
T ss_pred             ------cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence                  0011112223334455778899999999999998762       222222222222222222222222222222


Q ss_pred             HHHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcc
Q 015488          303 GARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIP  381 (406)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  381 (406)
                      ...++..+..+..+.+.+|+.| +.|+++.|+.+..+.+|++++|.+.+ ..+..+....+++.+++.++++++.++.+
T Consensus       357 l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        357 LFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             HHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            2222222334556677778765 68999999999999898888887654 11222234567777777788777766654

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.89  E-value=1.5e-20  Score=182.77  Aligned_cols=336  Identities=16%  Similarity=0.209  Sum_probs=192.9

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhc----ccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFS----PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSV   75 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a----~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~   75 (406)
                      +||+.+..+.++..++..+.++.    .++..+.+.|++.|++.|.. +....++.|++|+++||+.+++++.+..+|..
T Consensus        89 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~  168 (438)
T TIGR00712        89 NPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGG  168 (438)
T ss_pred             CCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhH
Confidence            58888898888888888877654    56788899999999988765 34556778999999999999999999999999


Q ss_pred             HHHHhhHH-hcccchhHHHHHHhhHHHHHH-HHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCC
Q 015488           76 SEAALAWI-VMPILTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTN  153 (406)
Q Consensus        76 l~~~l~~~-~~~~~~Wr~~f~i~~ip~~~~-~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  153 (406)
                      +++.+... +....+||+.|++.++..++. ++..+++||+|+....+. .+          +.++ +.+          
T Consensus       169 ~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~----------~~~~-~~~----------  226 (438)
T TIGR00712       169 IPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPP-IE----------EYRN-DYP----------  226 (438)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCC-ch----------hccc-ccc----------
Confidence            88876654 333468999999988877664 455667899886421000 00          0000 000          


Q ss_pred             CcccccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccc
Q 015488          154 DLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSIL  233 (406)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  233 (406)
                        ++..++ ++++.         ..++.... ..+.++..+..    ....+.....+++...+.|.+..+..       
T Consensus       227 --~~~~~~-~~~~~---------~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~~l~~~~-------  282 (438)
T TIGR00712       227 --DDYNEK-AEQEL---------TAKEIFMQ-YVLPNKLLWYI----AIANVFVYLLRYGVLDWSPTYLKEVK-------  282 (438)
T ss_pred             --cccccc-ccccc---------chHHHHHH-HHccCchHHHH----HHHHHHHHHHHHHHHHhHHHHHHHcc-------
Confidence              000000 00000         00000000 01112222221    11112222333444444444332100       


Q ss_pred             cccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHH--HHHHHH-Hhh--hhhHHHHHHHHHHHHHh
Q 015488          234 LSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVC--IFLLPL-VTL--QSNILLTALLSGARMFS  308 (406)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~--~~~~~~-~~~--~~~~~~~~~~~~~~~~~  308 (406)
                         +..............+.++++.+++++++||+++++....+.....  +..... ...  .+........+...+..
T Consensus       283 ---g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  359 (438)
T TIGR00712       283 ---HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLI  359 (438)
T ss_pred             ---CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence               0011111223344556788899999999999954322222211111  111111 111  11111111111111111


Q ss_pred             hhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHH-HHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccC
Q 015488          309 MGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGG-MVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  385 (406)
Q Consensus       309 ~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~-~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  385 (406)
                      .+..........|.+|++.|+++.|+.+.++++++ .++|.+.+.+.+..+....+.++.+.++++.+..+++.||+|
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       360 YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             ccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            22222223456799999999999999999999875 578999988888666556677777778888888888888876

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK03699 putative transporter; Provisional

Probab=99.89  E-value=3e-20  Score=178.22  Aligned_cols=309  Identities=15%  Similarity=0.166  Sum_probs=191.2

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      +||+.++.+.++..++..+.++++|++.+++.|+++|++.|... ....++.|+.|+++||+..+..+....+|..+++.
T Consensus        70 g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  149 (394)
T PRK03699         70 PLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPI  149 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999887653 45567889999999999999988888899888888


Q ss_pred             hhHHhc-ccchhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 015488           80 LAWIVM-PILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEE  158 (406)
Q Consensus        80 l~~~~~-~~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (406)
                      +...+. +..+||+.|.+.+++.++..+..+. .+.|+..  ++  +                            + ++ 
T Consensus       150 ~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~~--~~--~----------------------------~-~~-  194 (394)
T PRK03699        150 IAAYLLARSIEWYWVYACIGLVYVAIFILTLF-SEFPALG--KH--A----------------------------P-KA-  194 (394)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHHHHHHHh-cCCcccc--cc--C----------------------------c-cc-
Confidence            776554 4579999999888776655443332 2333200  00  0                            0 00 


Q ss_pred             cccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCc
Q 015488          159 FSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENV  238 (406)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  238 (406)
                        +.++             .+.       .+++    ..+...+..+.....+++...|.|.+..+...        .+.
T Consensus       195 --~~~~-------------~~~-------~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g--------~s~  240 (394)
T PRK03699        195 --DKPV-------------AKE-------KWGI----GVLFLAIAALLYILAQLTFISWVPEYAQKKFG--------MSL  240 (394)
T ss_pred             --cCcc-------------ccc-------cCCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CCh
Confidence              0000             000       0011    12222222233333444444555544321100        001


Q ss_pred             cchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 015488          239 QDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIF  318 (406)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (406)
                      .+..  .......++..+|.+++++++||++||+.+.....+..+....+....+............++..+.++....+
T Consensus       241 ~~~~--~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~  318 (394)
T PRK03699        241 EDAG--NLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITL  318 (394)
T ss_pred             HHhh--HHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111  11223345678899999999999999998877655544433333222222222222222223333445555666


Q ss_pred             cccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcc
Q 015488          319 APEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIP  381 (406)
Q Consensus       319 ~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  381 (406)
                      ..|..|.+ ++...|.....+.+|+.++|.+.+++.+..+....+...+++++++.+...+..
T Consensus       319 ~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (394)
T PRK03699        319 GSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLG  380 (394)
T ss_pred             HHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHH
Confidence            77777754 677889999999999999999999888766655666666666666655544443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.88  E-value=1.1e-19  Score=172.99  Aligned_cols=306  Identities=18%  Similarity=0.175  Sum_probs=180.3

Q ss_pred             CcchhhHH-HHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhH--HHHHHHHHHHHHHH
Q 015488            1 MEEGSILG-GALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKW--MVVFSTFWTFGSVS   76 (406)
Q Consensus         1 ~rr~~~~~-~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~--~~~~~~~~~~G~~l   76 (406)
                      +||+.++. +.+...++..+.++++|++.+++.|++.|.+.+.. +....+..|+.|+++|++.  .+....+.++|.++
T Consensus        61 g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i  140 (375)
T TIGR00899        61 GDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVI  140 (375)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHH
Confidence            57776554 55556667788899999999999999998766543 3445567788888877654  57777788899999


Q ss_pred             HHHhhHHhcccchhHHHHHHhhHHHHHHHH-HHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCc
Q 015488           77 EAALAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDL  155 (406)
Q Consensus        77 ~~~l~~~~~~~~~Wr~~f~i~~ip~~~~~~-~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~  155 (406)
                      ++.++..+.+..+||+.|++.+++.++..+ ..+.+||+|++...+.                                 
T Consensus       141 g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------  187 (375)
T TIGR00899       141 GPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGAL---------------------------------  187 (375)
T ss_pred             hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCccccc---------------------------------
Confidence            999988888788999999999887666544 4456899875310000                                 


Q ss_pred             ccccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhccCCCCCccccc
Q 015488          156 DEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLL-ASELSGSQSKCSSSILL  234 (406)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~  234 (406)
                      ++    .+.              +    .  ...+++.+.........+............+ .....            
T Consensus       188 ~~----~~~--------------~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------------  231 (375)
T TIGR00899       188 TR----LEV--------------R----G--LLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELG------------  231 (375)
T ss_pred             Cc----chh--------------h----h--hhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcC------------
Confidence            00    000              0    0  0001111111111112221111111111111 11110            


Q ss_pred             ccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhh
Q 015488          235 SENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFII  314 (406)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (406)
                         .................+++..+++++.||+|||+.+..+.+...+....+....+.+..........++.....+.
T Consensus       232 ---~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  308 (375)
T TIGR00899       232 ---LPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGI  308 (375)
T ss_pred             ---CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               00111111222233455677889999999999999887765544443332222222222222212222222223455


Q ss_pred             hhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHh
Q 015488          315 ANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILL  379 (406)
Q Consensus       315 ~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  379 (406)
                      ...+..|..|.+ |+++.|+.+...++|+.++|.+.+.+.+..+....+.+.+++++++.+...+
T Consensus       309 ~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       309 GMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             HHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence            567778999875 5699999999999999999999988777665555666666776666655433

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.88  E-value=1.3e-19  Score=170.39  Aligned_cols=287  Identities=27%  Similarity=0.379  Sum_probs=203.8

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      +||+.+..+..+..++..+..+++++..+++.|++.|++.+.. +....++.|+.|+++|++..++.+....+|..+++.
T Consensus        62 g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  141 (352)
T cd06174          62 GRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPL  141 (352)
T ss_pred             CCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999998875 456678899999999999999999999999999999


Q ss_pred             hhHHhcccchhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 015488           80 LAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEF  159 (406)
Q Consensus        80 l~~~~~~~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (406)
                      ++..+.+..+||+.+.+.+++.++..+...++|  |+                                           
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------------------------------------------  176 (352)
T cd06174         142 LGGLLAESLGWRWLFLILAILGLLLALLLLFLL--RL-------------------------------------------  176 (352)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--HH-------------------------------------------
Confidence            999888888899999998888776655554443  00                                           


Q ss_pred             ccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCcc
Q 015488          160 STSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQ  239 (406)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  239 (406)
                                                           ........+.....+.....+.+....+.          .+..
T Consensus       177 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~  209 (352)
T cd06174         177 -------------------------------------LLLLALAFFLLSFGYYGLLTYLPLYLQEV----------LGLS  209 (352)
T ss_pred             -------------------------------------HHHHHHHHHHHHhHHHHHHHHHHHHHHHh----------cCCC
Confidence                                                 00111111112222222222222221110          0111


Q ss_pred             chhhHHHHHHHHhhhhHHHHHHHHHHhhhchHH-HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 015488          240 DASVYINVFITSFAELPGLLTAALLVDRVGRKL-SMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIF  318 (406)
Q Consensus       240 ~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (406)
                      ............++..++..+.+++.||.|||+ .+..+..+..+.........+............+......+....+
T Consensus       210 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  289 (352)
T cd06174         210 AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTL  289 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHH
Confidence            122333445556778889999999999999999 8877766666555444333322222222222333334456778889


Q ss_pred             cccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHh
Q 015488          319 APEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILL  379 (406)
Q Consensus       319 ~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  379 (406)
                      ..|..|++.|+++.|+.+...++++.++|.+.+.+.+..+....+.+.+++.+++.+..++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~  350 (352)
T cd06174         290 ASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL  350 (352)
T ss_pred             HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence            9999999999999999999999999999999988877655556777778887777666543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.88  E-value=4.3e-19  Score=174.59  Aligned_cols=314  Identities=17%  Similarity=0.134  Sum_probs=190.5

Q ss_pred             Ccchh-hHHHHHHHHHHHHHHhhc---ccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHH
Q 015488            1 MEEGS-ILGGALVTFVAGLLSAFS---PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSV   75 (406)
Q Consensus         1 ~rr~~-~~~~~~~~~i~~~~~~~a---~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~   75 (406)
                      |||+. +..+.+...++..+.++.   +++..+.+.|++.|++.+.. .....+..|+.|+++||+..++...++.+|.+
T Consensus        78 Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~l  157 (491)
T PRK11010         78 GRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAML  157 (491)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHH
Confidence            57775 657777777777777665   47888999999999877654 34566789999999999999999999999999


Q ss_pred             HHHHhhHHhcc-cchhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCC
Q 015488           76 SEAALAWIVMP-ILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTND  154 (406)
Q Consensus        76 l~~~l~~~~~~-~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~  154 (406)
                      +++.+...+.+ ..|||..|++.++..++..+..+++||+|+..   .+ ++.                           
T Consensus       158 lg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~-~~~---------------------------  206 (491)
T PRK11010        158 VSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTI---PV-PKT---------------------------  206 (491)
T ss_pred             HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---cc-ccc---------------------------
Confidence            99998888777 57999999998887777666666688876421   00 000                           


Q ss_pred             cccccccCCccccchhhhccccccccccchhhhccC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccc
Q 015488          155 LDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS-PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSIL  233 (406)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  233 (406)
                        .     ++ ..              ...+.++++ ++.+. .....+.+.......+  ....+.+....        
T Consensus       207 --~-----~~-~~--------------~~~l~~~~~~~~~~~-~ll~~~l~~~~~~~~~--~~~~~~l~~~~--------  253 (491)
T PRK11010        207 --L-----EQ-AV--------------VAPLRDFFGRNNAWL-ILLLIVLYKLGDAFAM--SLTTTFLIRGV--------  253 (491)
T ss_pred             --h-----hh-hH--------------HHHHHHHHcCcCHHH-HHHHHHHHHHHHHHHH--HHHHHHHHHhc--------
Confidence              0     00 00              001112222 22222 1111111111111111  11112211100        


Q ss_pred             cccCccchhhHHHH-HHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH---HhhhhhHHH-HHHHHHHHHHh
Q 015488          234 LSENVQDASVYINV-FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPL---VTLQSNILL-TALLSGARMFS  308 (406)
Q Consensus       234 ~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~  308 (406)
                         +.......... ....++.++|.+++++++||+|||+.+..+.+...+....+   .....+... ........++.
T Consensus       254 ---G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~  330 (491)
T PRK11010        254 ---GFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCG  330 (491)
T ss_pred             ---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence               01111111221 23345778999999999999999887766544333322211   111111111 11111111111


Q ss_pred             hhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcc
Q 015488          309 MGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIP  381 (406)
Q Consensus       309 ~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  381 (406)
                      ....+..+.+..++.|.+.+++..|+.++...+|+.+.+.+.+.+.+..+....|.+.+++++++.+..++++
T Consensus       331 g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        331 GMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            1123445777889999999999999999999999888877888888877665667777788888877766654

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.87  E-value=1.3e-19  Score=171.55  Aligned_cols=292  Identities=13%  Similarity=0.126  Sum_probs=182.3

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcc-----cHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSP-----NYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGS   74 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~-----~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~   74 (406)
                      +||+.++.+.++..++..+..+++     |++.+++.|++.|++.+.. +....++.|+.|+++|++..++.+.+..+|.
T Consensus        62 g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  141 (365)
T TIGR00900        62 DRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFY  141 (365)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHH
Confidence            699999999999988888888877     9999999999999988765 3456788999999999999999999999999


Q ss_pred             HHHHHhhHHhcccchhHHHHHHhhHHHHHHHHHHHhc--cCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCC
Q 015488           75 VSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFM--PESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGT  152 (406)
Q Consensus        75 ~l~~~l~~~~~~~~~Wr~~f~i~~ip~~~~~~~~~~~--pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~  152 (406)
                      ++++.++..+.+..+||+.|++.+++.++..+..+.+  ||+++.    ++.+                           
T Consensus       142 ~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---------------------------  190 (365)
T TIGR00900       142 IVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAAS----EIQA---------------------------  190 (365)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCc----cccc---------------------------
Confidence            9999999888888899999998887766554433332  332210    0000                           


Q ss_pred             CCcccccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhccCCCCCcc
Q 015488          153 NDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIV-LLASELSGSQSKCSSS  231 (406)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~  231 (406)
                        .+    + +   ..+ +.      +   +..+.+++++..+........   ....+++.. .+.|.+..+.      
T Consensus       191 --~~----~-~---~~~-~~------~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~------  241 (365)
T TIGR00900       191 --LS----N-A---VLR-DT------R---EGIKFVLKNPLLRTLLLLALL---FNLVFAPAIVALFPYVQSKY------  241 (365)
T ss_pred             --cc----h-h---HHH-HH------H---hHHHHHHcCcHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHH------
Confidence              00    0 0   000 00      0   011122222222222211111   111111111 1222221100      


Q ss_pred             cccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHhhh
Q 015488          232 ILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQS-NILLTALLSGARMFSMG  310 (406)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  310 (406)
                          .+..............++.+++.++.+++.||.|||+.+..+....++....+....+ ............+....
T Consensus       242 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  317 (365)
T TIGR00900       242 ----LGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGP  317 (365)
T ss_pred             ----hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Confidence                0011112222333445677888999999999999999887765555544443333222 22221222222222233


Q ss_pred             hhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhh
Q 015488          311 TFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS  356 (406)
Q Consensus       311 ~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~  356 (406)
                      ..+....+..|.+|++.|+++.|+.+.+.++++.++|.+.+.+.+.
T Consensus       318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~  363 (365)
T TIGR00900       318 INVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH  363 (365)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456678889999999999999999999999999999998877664

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.87  E-value=3.5e-20  Score=176.24  Aligned_cols=308  Identities=17%  Similarity=0.229  Sum_probs=178.9

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHH-
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEA-   78 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~-   78 (406)
                      +||+.++.+.++..++.++.+++++++.+++.|++.|++.|.. +....++.|+.|+++|++..++.+.+..+|..+++ 
T Consensus        58 g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  137 (379)
T TIGR00881        58 NPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPP  137 (379)
T ss_pred             CCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHH
Confidence            6899999999999999999999999999999999999998875 45667889999999999999999999999999999 


Q ss_pred             HhhHHhcccchhHHHHHHhhHHHHHH-HHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCccc
Q 015488           79 ALAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDE  157 (406)
Q Consensus        79 ~l~~~~~~~~~Wr~~f~i~~ip~~~~-~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (406)
                      .+...+.+..+||+.|++.++..++. .+..+..||+|+...   +.++.                + +.    .++.++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----------------~-~~----~~~~~~  193 (379)
T TIGR00881       138 LVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCG---LPPAE----------------E-MP----NEEPDG  193 (379)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCccccc---cCccc----------------c-Cc----cccccc
Confidence            46666666789999999887765554 455567788775211   00000                0 00    000000


Q ss_pred             ccccCCccccchhhhccccccccccchhhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccccccc
Q 015488          158 EFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSE  236 (406)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  236 (406)
                      . ++.+++        +....+   .....++ ++..+.    +.+..+......++...+.|....+.          .
T Consensus       194 ~-~~~~~~--------~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~----------~  247 (379)
T TIGR00881       194 D-AEKKEE--------ELTKKQ---IFLQYVLLNKVLWY----ISLGYVFVYVVRTGILDWSPLYLTQE----------K  247 (379)
T ss_pred             c-cccccc--------cccchH---HHHHHHHhcchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH----------h
Confidence            0 000000        000000   0111111 222221    11122222222222222222221100          0


Q ss_pred             CccchhhHHHHHHHHhhhhHHHHHHHHHHhhhc-hHHHHH-HHHHHHHHH-HHHHHh--hhhhHHHHHHHHHHHHHhhhh
Q 015488          237 NVQDASVYINVFITSFAELPGLLTAALLVDRVG-RKLSMT-IMFIFVCIF-LLPLVT--LQSNILLTALLSGARMFSMGT  311 (406)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~g-rR~~~~-~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~  311 (406)
                      +..............+.++++.++.+++.||.+ ||+... ......... ......  ..+.............+..+.
T Consensus       248 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  327 (379)
T TIGR00881       248 GFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGP  327 (379)
T ss_pred             CCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhh
Confidence            011111222334445677889999999999863 333222 211111111 111111  111111111112222223344


Q ss_pred             hhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhch
Q 015488          312 FIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH  358 (406)
Q Consensus       312 ~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~  358 (406)
                      ....+.+..|.+|++.|+++.|+.+.++.+|+.++|.+.+.+.+..+
T Consensus       328 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  374 (379)
T TIGR00881       328 QMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG  374 (379)
T ss_pred             hHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc
Confidence            45556788999999999999999999999999999999988877544

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.87  E-value=5.4e-20  Score=181.36  Aligned_cols=333  Identities=13%  Similarity=0.152  Sum_probs=191.7

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      +||+.++.+.++..++..++++++|++.++++|+++|++.|.. +....++.|++|+++|++..+++..+..+|..+++.
T Consensus        65 g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  144 (485)
T TIGR00711        65 GTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPT  144 (485)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            6999999999999999999999999999999999999998865 456678899999999999999999999999999999


Q ss_pred             hhHHhcccchhHHHHHHhhHHHHHH-HHHHHhccCCcchhhccCChhhHHHHHHHH------HHHcCCCCCCCCCcCCCC
Q 015488           80 LAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKI------AQFNQTSLPSGNLTSDGT  152 (406)
Q Consensus        80 l~~~~~~~~~Wr~~f~i~~ip~~~~-~~~~~~~pESp~~l~~~~~~~~a~~~l~~~------~~~~~~~~~~~~~~~~~~  152 (406)
                      ++..+.+..+||+.|++.+.+.++. .+..+.+||+++-  .+++.|.....+...      ...++.+. .+      .
T Consensus       145 ~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~-~~------~  215 (485)
T TIGR00711       145 LGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPE-RG------W  215 (485)
T ss_pred             cHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCC-CC------C
Confidence            9998888899999999988776655 3445567876541  222223221111100      00000000 00      0


Q ss_pred             CCcccccccCCccc-cchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcc
Q 015488          153 NDLDEEFSTSEETP-LLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSS  231 (406)
Q Consensus       153 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  231 (406)
                      .+........-... .......+....+++......+.+++.+...+..    +...+.+++...+.|.+..+.      
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~------  285 (485)
T TIGR00711       216 FDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYM----SLLGLGLYGSFYLLPLYLQQV------  285 (485)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHH----HHHHHHHHHHHHHHHHHHHHh------
Confidence            00000000000000 0000000000001111112222333333322222    222233333333333322110      


Q ss_pred             cccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh-h--hhh-HHHHHHHHHHHHH
Q 015488          232 ILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT-L--QSN-ILLTALLSGARMF  307 (406)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~-~--~~~-~~~~~~~~~~~~~  307 (406)
                          .+..............++.+++.++++++.||+|||+.+..+..+..+....+.. .  ... ...........+.
T Consensus       286 ----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g  361 (485)
T TIGR00711       286 ----LGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFG  361 (485)
T ss_pred             ----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHH
Confidence                0011112223334455677889999999999999999887776655544443331 1  111 1111111111122


Q ss_pred             hhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhh
Q 015488          308 SMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS  356 (406)
Q Consensus       308 ~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~  356 (406)
                      ....+........|.+|++.|+++.|+.+....+|+.+++.+.+.+.+.
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       362 MGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222333445556788999999999999999999999999888877653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK12382 putative transporter; Provisional

Probab=99.87  E-value=3.5e-19  Score=170.82  Aligned_cols=301  Identities=19%  Similarity=0.088  Sum_probs=181.2

Q ss_pred             CcchhhHHHHHHHHHHHHH---Hhh-----cccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLL---SAF-----SPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWT   71 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~---~~~-----a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~   71 (406)
                      +||+.++.+.+...++.+.   .+.     .+|++.+++.|+++|++.+.. +....+..|+.|+++|++.+++.+.+..
T Consensus        79 g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~  158 (392)
T PRK12382         79 GAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMY  158 (392)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHH
Confidence            6899999888777665542   222     358899999999999998765 3445678899999999999999999999


Q ss_pred             HHHHHHHHhhHHhcccchhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCC
Q 015488           72 FGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDG  151 (406)
Q Consensus        72 ~G~~l~~~l~~~~~~~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~  151 (406)
                      +|.++++.++..+.+..+||+.+.+..+..++.+......||.|..   +                              
T Consensus       159 ~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------------------------------  205 (392)
T PRK12382        159 GALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAFNGTVRKVPAH---A------------------------------  205 (392)
T ss_pred             HHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhccCCCCC---c------------------------------
Confidence            9999999998888778899998877655443333222223332210   0                              


Q ss_pred             CCCcccccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcc
Q 015488          152 TNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSS  231 (406)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  231 (406)
                          ++     + .+ .          ++   ..     +..++......+.    .+.+.....+.+....+.+     
T Consensus       206 ----~~-----~-~~-~----------~~---~~-----~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~-----  247 (392)
T PRK12382        206 ----GE-----R-PS-L----------WS---VV-----GLIWKPGLGLALQ----GVGFAVIGTFVSLYFASKG-----  247 (392)
T ss_pred             ----cc-----C-ch-H----------HH---HH-----HHHHHhHHHHHHH----HHHHhHHHHHHHHHHHhcC-----
Confidence                00     0 00 0          00   00     0011111111111    1111111111111111100     


Q ss_pred             cccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhh
Q 015488          232 ILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGT  311 (406)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (406)
                            ....  ........++.+++.+..+++.||+|||+.+..+..+..+....+....+............+.....
T Consensus       248 ------~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  319 (392)
T PRK12382        248 ------WAMA--GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLI  319 (392)
T ss_pred             ------Cchh--HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhH
Confidence                  0011  11222334556788899999999999998887765555444333332222222111111111222223


Q ss_pred             hhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhc
Q 015488          312 FIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI  380 (406)
Q Consensus       312 ~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  380 (406)
                      .+.......|.+|++.|+++.|+.+....+|+.++|.+.+.+.+..+....+.+.+++.+++.+...++
T Consensus       320 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        320 FPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence            344556678899999999999999999999999999999988877666566777777777776665544

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.86  E-value=4.9e-19  Score=170.59  Aligned_cols=313  Identities=16%  Similarity=0.113  Sum_probs=191.9

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcchhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHh
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAAL   80 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l   80 (406)
                      +||+.++.+.++..++..+.++++|++.+++.|++.|++.+..+....++.|..|+++|++..+.......+|.++++.+
T Consensus        82 g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  161 (408)
T PRK09874         82 GRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLA  161 (408)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999988888899999999999999999755444445567899999999999999999999999999999


Q ss_pred             hHHhcccchhHHHHHHhhHHHHHHH-HHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 015488           81 AWIVMPILTWRWLLALSAIPAFVLL-IFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEF  159 (406)
Q Consensus        81 ~~~~~~~~~Wr~~f~i~~ip~~~~~-~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (406)
                      +..+.+..+||+.|++.++..++.. ...+++||.++-.   .+.++ .                               
T Consensus       162 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~-------------------------------  206 (408)
T PRK09874        162 GGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPV---SKKEM-L-------------------------------  206 (408)
T ss_pred             HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccc---cchhh-h-------------------------------
Confidence            9888777899999998887766543 3445566654210   00000 0                               


Q ss_pred             ccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHH-HHH-HHHHHHHHHHHHhhhccCCCCCcccccccC
Q 015488          160 STSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLY-FGN-SFVYYGIVLLASELSGSQSKCSSSILLSEN  237 (406)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  237 (406)
                         +.++                 ....+.+++.+.......... ... ....+. ..+.......           ..
T Consensus       207 ---~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----------~~  254 (408)
T PRK09874        207 ---HMRE-----------------VVTSLKNPKLVLSLFVTTLIIQVATGSIAPIL-TLYVRELAGN-----------VS  254 (408)
T ss_pred             ---HHHH-----------------HHHhCcCCchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcc-----------ch
Confidence               0000                 000111122222111111111 110 000000 0111111100           00


Q ss_pred             ccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhh
Q 015488          238 VQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANI  317 (406)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (406)
                      ..............+..+++....+++.||+|||+.+..+.....+.........+............++.....+....
T Consensus       255 ~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  334 (408)
T PRK09874        255 NIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQT  334 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHH
Confidence            00000011112233555677778899999999999888776655544433332222222212212222222223344555


Q ss_pred             hcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhc
Q 015488          318 FAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI  380 (406)
Q Consensus       318 ~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  380 (406)
                      ...+..|.+.|++..|+.+.+..+|..++|.+.+.+.+..+....|.+.+++.+++.+..++.
T Consensus       335 ~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  397 (408)
T PRK09874        335 LLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNS  397 (408)
T ss_pred             HHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            667888999999999999999999999999998888776666667777777777777666554

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.86  E-value=1.6e-18  Score=165.52  Aligned_cols=305  Identities=12%  Similarity=0.071  Sum_probs=181.1

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      +||+.+..+.++..++.+++++++|++.+++.|++.|++.|... ....++.|+.|+++|++.++....+..+|..+++.
T Consensus        66 g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  145 (382)
T PRK10091         66 SLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIP  145 (382)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhcc
Confidence            68999999999999999999999999999999999999988753 34456789999999999999999999999999999


Q ss_pred             hhHHhcccchhHHHHHHhhHHHHHHH-HHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 015488           80 LAWIVMPILTWRWLLALSAIPAFVLL-IFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEE  158 (406)
Q Consensus        80 l~~~~~~~~~Wr~~f~i~~ip~~~~~-~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (406)
                      ++..+.+..+||+.|.+.++..++.. ...+.+||.++    +.+.+ .+                              
T Consensus       146 l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~----~~~~~-~~------------------------------  190 (382)
T PRK10091        146 LGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRD----EAKGG-LR------------------------------  190 (382)
T ss_pred             HHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCc----ccccC-HH------------------------------
Confidence            98888777899999999887665543 34556787542    00000 00                              


Q ss_pred             cccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhccCCCCCcccccccC
Q 015488          159 FSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIV-LLASELSGSQSKCSSSILLSEN  237 (406)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~  237 (406)
                             +                 ..+.+.+++.+.    .....+......+... +..+.+....           +
T Consensus       191 -------~-----------------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g  231 (382)
T PRK10091        191 -------E-----------------QFHFLRSPAPWL----IFAATMFGNAGVFAWFSYIKPYMMFIS-----------G  231 (382)
T ss_pred             -------H-----------------HHHHhcChHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhc-----------C
Confidence                   0                 000111121111    1111111111111111 1111111100           0


Q ss_pred             ccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHhhhhhh-hh
Q 015488          238 VQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT-LQSNILLTALLSGARMFSMGTFI-IA  315 (406)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~  315 (406)
                      ..............++.+++.++.+++.||+|+|+.+..+..+..+....+.. ..+................+..+ ..
T Consensus       232 ~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  311 (382)
T PRK10091        232 FSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQ  311 (382)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHH
Confidence            11112222334455678899999999999999999887765554443332222 12222211111111111111122 12


Q ss_pred             hhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHHHHHHHHhcc
Q 015488          316 NIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC-HQTAAILLLEALIVLSVVVILLIP  381 (406)
Q Consensus       316 ~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~-~~~~~~~~~~~~~~i~~~~~~~~~  381 (406)
                      .....+..|.+.++.+  ..+....+|+.++|.+.+.+.+.. +....+.+.++.+++......++.
T Consensus       312 ~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (382)
T PRK10091        312 ILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYG  376 (382)
T ss_pred             HHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHh
Confidence            2334455566555554  346667889999999999888753 344455555555555554544444

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.85  E-value=3.6e-18  Score=163.80  Aligned_cols=115  Identities=20%  Similarity=0.273  Sum_probs=98.4

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      +||+.++.+.++..++..+..+++++..+++.|+++|++.+... ....++.|..|+++|++..++.+....+|..+++.
T Consensus        66 g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~  145 (392)
T PRK10473         66 GRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPV  145 (392)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999988654 45667899999999999999999999999999999


Q ss_pred             hhHHhcccchhHHHHHHhhHHHHHH-HHHHHhccCCc
Q 015488           80 LAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMPESP  115 (406)
Q Consensus        80 l~~~~~~~~~Wr~~f~i~~ip~~~~-~~~~~~~pESp  115 (406)
                      ++..+.+..+||+.|++.++..++. .+..+.+||++
T Consensus       146 i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~  182 (392)
T PRK10473        146 LGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETR  182 (392)
T ss_pred             HHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            9888777789999999887766554 34455677764

>PRK10504 putative transporter; Provisional

Probab=99.85  E-value=4.1e-18  Score=167.45  Aligned_cols=330  Identities=13%  Similarity=0.099  Sum_probs=183.6

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      +||+.++.+.++..++.++++++++++.+++.|+++|++.|.. +....++.|+.|+++|++..++.+....+|..+++.
T Consensus        73 g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  152 (471)
T PRK10504         73 GVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPA  152 (471)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            6899999999999999998999999999999999999998875 455667889999999999999999999999999999


Q ss_pred             hhHHhcccchhHHHHHHhhHHHHHHH-HHHHhccCCcchhhccCChhhHHHHHHHHH------HHcCCCCCCCCCcCCCC
Q 015488           80 LAWIVMPILTWRWLLALSAIPAFVLL-IFIVFMPESPRYLCTKGRITDAHNILDKIA------QFNQTSLPSGNLTSDGT  152 (406)
Q Consensus        80 l~~~~~~~~~Wr~~f~i~~ip~~~~~-~~~~~~pESp~~l~~~~~~~~a~~~l~~~~------~~~~~~~~~~~~~~~~~  152 (406)
                      ++..+.+..+||+.|.+......+.. +.....||++.   ++.|.|.+.....-..      ..++.+. ..      .
T Consensus       153 ~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~  222 (471)
T PRK10504        153 LGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKG-LG------L  222 (471)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCc-CC------c
Confidence            99888888899999998765544443 33444565442   2223333322111100      0000000 00      0


Q ss_pred             CCcccccccC---CccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 015488          153 NDLDEEFSTS---EETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCS  229 (406)
Q Consensus       153 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  229 (406)
                      ........-.   -.-.....+++..   +++..+.+.+.+++++.......+.+.......+...++.....       
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------  292 (471)
T PRK10504        223 SPLAIAGLVAVGVVALLLYLLHARNN---NRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGL-------  292 (471)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhcC---CCCccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------
Confidence            0000000000   0000000000000   00001122222333322222122222222111111122211111       


Q ss_pred             cccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh--hhhHH-HHHHHHHHHH
Q 015488          230 SSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL--QSNIL-LTALLSGARM  306 (406)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~  306 (406)
                             +..............+..+++..+.+.+.||+|||+.+..+..+..+....+...  ..... ..........
T Consensus       293 -------g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  365 (471)
T PRK10504        293 -------GFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGM  365 (471)
T ss_pred             -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence                   0111112222333345556677889999999999999887766555443333221  11111 1111111112


Q ss_pred             HhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhc
Q 015488          307 FSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC  357 (406)
Q Consensus       307 ~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~  357 (406)
                      .....++.......+.+|.+.|+++.|+.+...++|+.++|.+.+.+++..
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~  416 (471)
T PRK10504        366 VNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLF  416 (471)
T ss_pred             HHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            222234455677778999999999999999999999999988887766543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.85  E-value=3.4e-18  Score=163.85  Aligned_cols=115  Identities=23%  Similarity=0.279  Sum_probs=99.4

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      +||+.++.+.++..++.+++++++|++.+++.|+++|++.|.. +....++.|++|+++|++..+....+.++|.++++.
T Consensus        83 grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~  162 (394)
T PRK10213         83 DRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAP  162 (394)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            6999999999999999999999999999999999999998875 445667889999999999999999999999999999


Q ss_pred             hhHHhcccchhHHHHHHhhHHHHHHH-HHHHhccCCc
Q 015488           80 LAWIVMPILTWRWLLALSAIPAFVLL-IFIVFMPESP  115 (406)
Q Consensus        80 l~~~~~~~~~Wr~~f~i~~ip~~~~~-~~~~~~pESp  115 (406)
                      ++..+.+..+||+.|++.++..++.. ......||+|
T Consensus       163 l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~  199 (394)
T PRK10213        163 LGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP  199 (394)
T ss_pred             HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            99998888899999998876655543 3334567754

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.85  E-value=2.9e-18  Score=164.46  Aligned_cols=310  Identities=14%  Similarity=0.155  Sum_probs=171.7

Q ss_pred             Ccchhh-HHHHHHHHHHHHHHhhcccHHHHHHHHHHhh-ccCCcchhhHHHHHhhcCCCcc--hhHHHHHHHHHHHHHHH
Q 015488            1 MEEGSI-LGGALVTFVAGLLSAFSPNYISLLILRGLAG-AGLGSGHVFFSWFMEFVPPSNR--GKWMVVFSTFWTFGSVS   76 (406)
Q Consensus         1 ~rr~~~-~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G-~g~g~~~~~~~~~~E~~p~~~R--g~~~~~~~~~~~~G~~l   76 (406)
                      +||+.+ +.+.++..++..+.+++++++.+++.+.+.| .+....+....+..|+.|+++|  +...+..+.+.++|.++
T Consensus        79 g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~  158 (393)
T PRK15011         79 GDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVI  158 (393)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Confidence            467664 4556666677777889999998876655544 4433333444566777777666  34557888899999999


Q ss_pred             HHHhhHHhcccchhHHHHHHhhHHHHHH-HHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCc
Q 015488           77 EAALAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDL  155 (406)
Q Consensus        77 ~~~l~~~~~~~~~Wr~~f~i~~ip~~~~-~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~  155 (406)
                      +++++..+.+..|||..|++.++..++. .+..+.+||+|+-   +.+ +                          +   
T Consensus       159 g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~--------------------------~---  205 (393)
T PRK15011        159 GPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKE---LPL-A--------------------------T---  205 (393)
T ss_pred             hhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCC---Ccc-c--------------------------c---
Confidence            9999998888889999999888766554 4445567887530   000 0                          0   


Q ss_pred             ccccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccc
Q 015488          156 DEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLS  235 (406)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  235 (406)
                      ++    .+  ..          .+++         ++.+.........+.    .++....+.|.+..+.          
T Consensus       206 ~~----~~--~~----------~~~~---------~~~~~~~~~~~~~~~----~~~~~~~~~p~~l~~~----------  246 (393)
T PRK15011        206 GT----LE--AP----------RRNR---------RDTLLLFVICTLMWG----TNSLYIINMPLFIINE----------  246 (393)
T ss_pred             cc----cc--cc----------cccc---------ccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH----------
Confidence            00    00  00          0000         001111111111111    1111112222211100          


Q ss_pred             cCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhh
Q 015488          236 ENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIA  315 (406)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (406)
                      .+.................+++.+++|+++||+|||+.+..+.....+....+....+............+......+..
T Consensus       247 ~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~  326 (393)
T PRK15011        247 LHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIG  326 (393)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            00111111112223345567788999999999999987766544433332222222222211111111111111122334


Q ss_pred             hhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhccccc
Q 015488          316 NIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  384 (406)
Q Consensus       316 ~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et  384 (406)
                      ..+..|.+|.+ |+++.++.+...++|+.++|.+.+.+.+..+....+.+.+++++++.+..++. ||+
T Consensus       327 ~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~  393 (393)
T PRK15011        327 MLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI-KDV  393 (393)
T ss_pred             HHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh-cCC
Confidence            55678999975 99999999999999999999999887776555455555566666665554443 443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.85  E-value=9.7e-18  Score=160.13  Aligned_cols=303  Identities=15%  Similarity=0.183  Sum_probs=179.3

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      +||+.+..+.++..++.++.+++++++.+++.|++.|++.+.. +....++.|+.|+++|++..+..+....+|..+++.
T Consensus        68 g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  147 (385)
T TIGR00710        68 GRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPL  147 (385)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999998875 445677899999999999999999999999999999


Q ss_pred             hhHHhcccchhHHHHHHhhHHHHHH-HHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 015488           80 LAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEE  158 (406)
Q Consensus        80 l~~~~~~~~~Wr~~f~i~~ip~~~~-~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (406)
                      ++..+.+..+||+.+++.++..++. ....+..||+++...   + ++..+                             
T Consensus       148 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~-----------------------------  194 (385)
T TIGR00710       148 LGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYEA---R-IQIST-----------------------------  194 (385)
T ss_pred             HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcc---c-CCHHH-----------------------------
Confidence            9988877789999999887766554 334456677653100   0 00000                             


Q ss_pred             cccCCccccchhhhccccccccccchhhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccC
Q 015488          159 FSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSEN  237 (406)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  237 (406)
                              .              .+.+...+ +++.+.......    .....++....+.|....+.          .+
T Consensus       195 --------~--------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~----------~g  238 (385)
T TIGR00710       195 --------Y--------------FETFLLLLKSKMFWGYALIYG----ASFGGFFAFFSGAPFVYIDI----------MG  238 (385)
T ss_pred             --------H--------------HHHHHHHHcCchhHHHHHHHH----HHHHHHHHHHHcChHHHHHH----------cC
Confidence                    0              00011111 222222111111    11112222222222111100          00


Q ss_pred             ccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh---h-hhHHH-HHHHHHHHHHhhhhh
Q 015488          238 VQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL---Q-SNILL-TALLSGARMFSMGTF  312 (406)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~---~-~~~~~-~~~~~~~~~~~~~~~  312 (406)
                      ..............+..+++.++.+++.||+|||+.+..+.....+....+...   . ..... ........+......
T Consensus       239 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  318 (385)
T TIGR00710       239 VSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMIS  318 (385)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            111112223334456778899999999999999998776654444332222211   1 11111 111111112222334


Q ss_pred             hhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHH
Q 015488          313 IIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVV  375 (406)
Q Consensus       313 ~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~  375 (406)
                      +....+..|.+| +.|+++.++.+.....++.+.+.+.+.+.+  +....+.++...+.+..+
T Consensus       319 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  378 (385)
T TIGR00710       319 SIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHG--NTAWPMSLSCLVLAVVSV  378 (385)
T ss_pred             HHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccc--cChHHHHHHHHHHHHHHH
Confidence            555667778888 568999999999888755554444443222  223344444444444333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.84  E-value=1.6e-17  Score=159.98  Aligned_cols=116  Identities=18%  Similarity=0.199  Sum_probs=97.6

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      +||+.++.+..+..++..+.+++++++.+++.|+++|++.+.. +....++.|..|+++|++..+.......+|..+++.
T Consensus        76 g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  155 (406)
T PRK15402         76 GRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPL  155 (406)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999988764 445667889999999999999888888889999999


Q ss_pred             hhHHhcccchhHHHHHHhhHHHHHHHH-HHHhccCCcc
Q 015488           80 LAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPESPR  116 (406)
Q Consensus        80 l~~~~~~~~~Wr~~f~i~~ip~~~~~~-~~~~~pESp~  116 (406)
                      ++..+.+..+||+.|++.++..++..+ ..+.+||+++
T Consensus       156 i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (406)
T PRK15402        156 VGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG  193 (406)
T ss_pred             HHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            888877778999999988877666544 4456777654

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.84  E-value=4.8e-18  Score=167.69  Aligned_cols=332  Identities=12%  Similarity=0.067  Sum_probs=184.1

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcch-hhHHHHHhh-cCCCcchhHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEF-VPPSNRGKWMVVFSTFWTFGSVSEA   78 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~-~p~~~Rg~~~~~~~~~~~~G~~l~~   78 (406)
                      |||+.++.+.+++.++++++++++|++.++++|+++|+|.|... .....+.+. .|+++|++..+++.....+|..++|
T Consensus        69 Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp  148 (495)
T PRK14995         69 GFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGP  148 (495)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999887643 334445454 5789999999999999999999999


Q ss_pred             HhhHHhcccchhHHHHHHhhHHHHHH-HHHHHhccCCcchhhccCChhhHHHHHH------HHHHHcCCCCCCCCCcCCC
Q 015488           79 ALAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILD------KIAQFNQTSLPSGNLTSDG  151 (406)
Q Consensus        79 ~l~~~~~~~~~Wr~~f~i~~ip~~~~-~~~~~~~pESp~~l~~~~~~~~a~~~l~------~~~~~~~~~~~~~~~~~~~  151 (406)
                      .++..+.+..+|||.|++.....++. .+..+.+||+|+-.  +++.|.....+.      .........  ...     
T Consensus       149 ~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~--~~~-----  219 (495)
T PRK14995        149 LVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTAL--KGF-----  219 (495)
T ss_pred             HHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhcc--ccC-----
Confidence            99999988899999999876555544 44556788876421  112221111100      000000000  000     


Q ss_pred             CCCcccccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcc
Q 015488          152 TNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSS  231 (406)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  231 (406)
                      ...........--..........+...+.+...+..+.++......    ...+.....+++...+.|......      
T Consensus       220 ~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~lq~v------  289 (495)
T PRK14995        220 LSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGV----VMAMTAMITLVGFELLMAQELQFV------  289 (495)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHH----HHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            0000000000000000000000000011121122222222222111    111222223333333333221100      


Q ss_pred             cccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh--h-hhHHHHHHHHHHHHHh
Q 015488          232 ILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL--Q-SNILLTALLSGARMFS  308 (406)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~  308 (406)
                          .+..............+...++..+.|++.||+|||+.+..+..+..+....+...  . +............+..
T Consensus       290 ----~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~  365 (495)
T PRK14995        290 ----HGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSA  365 (495)
T ss_pred             ----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhH
Confidence                00111112223334456677888999999999999998877665554433322221  1 1111111122222222


Q ss_pred             hhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhh
Q 015488          309 MGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT  355 (406)
Q Consensus       309 ~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~  355 (406)
                      ....+.......+..|.+.++.+.++.+....+|+.+++.+.+.+++
T Consensus       366 g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        366 ASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22334455666788999999999999999999999888877776654

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.84  E-value=3.8e-18  Score=163.36  Aligned_cols=303  Identities=15%  Similarity=0.160  Sum_probs=181.1

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhc-----ccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFS-----PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGS   74 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a-----~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~   74 (406)
                      |.|+.+.++.++.++.+.+.+++     +|++.+++.|++.|++ |.. .+....+++++|+++||++.++.....++|.
T Consensus        98 G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~  176 (462)
T PRK15034         98 GGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGV  176 (462)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHH
Confidence            56888999999999999999987     8999999999999998 444 4556678999999999999999965555666


Q ss_pred             HHHHHhhHHhc------------------ccchhHHHHHHhhHHHHHHHHH-HHhccCCcchhhccCChhhHHHHHHHHH
Q 015488           75 VSEAALAWIVM------------------PILTWRWLLALSAIPAFVLLIF-IVFMPESPRYLCTKGRITDAHNILDKIA  135 (406)
Q Consensus        75 ~l~~~l~~~~~------------------~~~~Wr~~f~i~~ip~~~~~~~-~~~~pESp~~l~~~~~~~~a~~~l~~~~  135 (406)
                      .+++.+...+.                  +..+||...++-.++.++..+. ++.+++.|.   .|.+.       +   
T Consensus       177 ~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~~~~-------~---  243 (462)
T PRK15034        177 SVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---SRASI-------A---  243 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---cccCH-------H---
Confidence            54444332211                  1345888887776666555433 333443221   00000       0   


Q ss_pred             HHcCCCCCCCCCcCCCCCCcccccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHH
Q 015488          136 QFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIV  215 (406)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (406)
                                                                     .....+++|+.|    ++...+++....|.++.
T Consensus       244 -----------------------------------------------~~~~vlk~~~~W----llslly~~tFG~fvg~s  272 (462)
T PRK15034        244 -----------------------------------------------DQLPVLQRLHLW----LLSLLYLATFGSFIGFS  272 (462)
T ss_pred             -----------------------------------------------HHHHHhCCCchh----HHHHHHHHHHHHHHHHH
Confidence                                                           001112223322    33333443333444444


Q ss_pred             HHHHhhhccCCCCCcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh--hh-
Q 015488          216 LLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT--LQ-  292 (406)
Q Consensus       216 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~--~~-  292 (406)
                      .+.|.+..+.            ....+......+..+.+.++..++|+++||+|+|+++..+.+...++......  .. 
T Consensus       273 ~~lp~~~~~~------------~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~  340 (462)
T PRK15034        273 AGFAMLAKTQ------------FPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGT  340 (462)
T ss_pred             HHHHHHHHHH------------cChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccc
Confidence            4444332110            00111122233344667778889999999999999988876655554432221  11 


Q ss_pred             ---hhHHHHHHHHHHHHHhhhhhhhhhhhcccccCc---------------------chhhHHHhHHHHhHhHHHHHHHH
Q 015488          293 ---SNILLTALLSGARMFSMGTFIIANIFAPEIYPT---------------------SMRSTGAGVAYAVGRIGGMVCPL  348 (406)
Q Consensus       293 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~---------------------~~R~~a~g~~~~~~~~g~~~~p~  348 (406)
                         +-.......+...++........+-..+..||.                     +.-+...|+..+.|.+|+++.|.
T Consensus       341 ~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~  420 (462)
T PRK15034        341 GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQ  420 (462)
T ss_pred             cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhH
Confidence               111122222222222222345567677888885                     14578889999999999999998


Q ss_pred             HHHHHhhhchhh-HHHHHHHHHHHHHHHHHHhc
Q 015488          349 VAVGLVTSCHQT-AAILLLEALIVLSVVVILLI  380 (406)
Q Consensus       349 ~~~~l~~~~~~~-~~~~~~~~~~~i~~~~~~~~  380 (406)
                      +++...+..+.+ ..+..+.+..++|.++....
T Consensus       421 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~  453 (462)
T PRK15034        421 AFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV  453 (462)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            888777665543 34666666666666655543

>PRK11043 putative transporter; Provisional

Probab=99.84  E-value=1.3e-17  Score=160.42  Aligned_cols=282  Identities=11%  Similarity=0.159  Sum_probs=170.4

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      +||+.+..+..+..++..+.+++++++.+++.|+++|++.+... ....++.|+.|+++|++..+.......+|..+++.
T Consensus        69 g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  148 (401)
T PRK11043         69 GRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPL  148 (401)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999877643 33456789999999999888888888899999999


Q ss_pred             hhHHhcccchhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 015488           80 LAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEF  159 (406)
Q Consensus        80 l~~~~~~~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (406)
                      ++..+.+..+||+.|++.++..++..+..++++|+++.    .+.++.+                               
T Consensus       149 i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-------------------------------  193 (401)
T PRK11043        149 LGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSKKA----RKQSQDA-------------------------------  193 (401)
T ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCCCc----cccchHH-------------------------------
Confidence            88888788899999998888777665555566665430    0000000                               


Q ss_pred             ccCCccccchhhhccccccccccchhhh-ccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCc
Q 015488          160 STSEETPLLSSARKRTTVRKSGFSSFLM-LFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENV  238 (406)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  238 (406)
                                             .+++. +.+++++.....    .......++....+.|.+....           +.
T Consensus       194 -----------------------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~p~~~~~~-----------g~  235 (401)
T PRK11043        194 -----------------------LTFKQLLKSKTYLGNVLI----FAACSAAFFAWLTGSPFILEQM-----------GY  235 (401)
T ss_pred             -----------------------HHHHHHHcChhHHHHHHH----HHHHHHHHHHHHHHhHHHHHHc-----------CC
Confidence                                   00111 112222221111    1111122222222233222110           01


Q ss_pred             cchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH---Hh-hhhhHHHHHH-HHHHHHHhhhhhh
Q 015488          239 QDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPL---VT-LQSNILLTAL-LSGARMFSMGTFI  313 (406)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~-~~~~~~~~~~~~~  313 (406)
                      .............++.++|.++++++.||+|+|+..........++...+   .. .......... .....+.....++
T Consensus       236 s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (401)
T PRK11043        236 SPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYP  315 (401)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHH
Confidence            11111112223345667788888999999999886644433333322211   11 1111111111 1111122223344


Q ss_pred             hhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhh
Q 015488          314 IANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS  356 (406)
Q Consensus       314 ~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~  356 (406)
                      .......|..|. .|+++.|+.+.++..++..++.+.+.+.+.
T Consensus       316 ~~~~~~~~~~~~-~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~  357 (401)
T PRK11043        316 IVVAQALRPFPQ-ATGKAAALQNTLQLGLCFLASLLVSALIST  357 (401)
T ss_pred             HHHHHHhhhCcc-cChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            455555677774 699999999999888888888888877654

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.84  E-value=6.5e-19  Score=165.89  Aligned_cols=285  Identities=25%  Similarity=0.380  Sum_probs=177.3

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      +||+.++.+.++..++..+..+++|++.+++.|++.|++.+.. +....++.|+.|+++|++..+..+.+..+|.++++.
T Consensus        60 g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  139 (352)
T PF07690_consen   60 GRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPL  139 (352)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccc
Confidence            5889999999999999766667788889999999999998765 456678899999999999999999999999999999


Q ss_pred             hhHHhcccchhHHHHHHhhHHHHHHHH-HHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 015488           80 LAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEE  158 (406)
Q Consensus        80 l~~~~~~~~~Wr~~f~i~~ip~~~~~~-~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (406)
                      ++..+.+..+||+.|++.++..++..+ ...+++|+|+....+.+.                               +++
T Consensus       140 l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~-------------------------------~~~  188 (352)
T PF07690_consen  140 LGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPK-------------------------------ESE  188 (352)
T ss_dssp             HHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SST-------------------------------TTT
T ss_pred             hhhhhhhccccccccccccchhhhhhhhHhhhhhhccccccccccc-------------------------------ccc
Confidence            999988888999999999888777654 345566655421100000                               000


Q ss_pred             cccCCccccchhhhccccccccccch-hhhccCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccccccc
Q 015488          159 FSTSEETPLLSSARKRTTVRKSGFSS-FLMLFSP-RFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSE  236 (406)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  236 (406)
                         .++              +++..+ ++.++++ ..+    ..+...+...+.++....+.|.+..+.          .
T Consensus       189 ---~~~--------------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~  237 (352)
T PF07690_consen  189 ---SKK--------------PKPLKPGFKSLFKNPVLW----ILLIAFFLFFFVFSGFSFFLPLYLQEV----------L  237 (352)
T ss_dssp             -----H--------------HHCCCH-CTHHHHHHCCH----HHHHHHHHHHHHHHHHHHHHHHHCCHH----------H
T ss_pred             ---ccc--------------ccccccccccccccchhh----hhhhhhhHHHHHHHHhhcccchhhhhc----------c
Confidence               000              000001 1122211 122    112222222233333444444321100          0


Q ss_pred             Ccc-chhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHhhhhh
Q 015488          237 NVQ-DASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT---LQSNILLTALLSGARMFSMGTF  312 (406)
Q Consensus       237 ~~~-~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  312 (406)
                      +.. ............+.++++.++.+++.||+++|+..........+....+..   ..+............+......
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  317 (352)
T PF07690_consen  238 GFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVF  317 (352)
T ss_dssp             HCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            011 122222334445667777899999999999877666554444443333222   1122222222222223333446


Q ss_pred             hhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHH
Q 015488          313 IIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCP  347 (406)
Q Consensus       313 ~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p  347 (406)
                      +....+..|.+|++.|+++.|+.+....+++.++|
T Consensus       318 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  318 PILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            77788999999999999999999999999998887

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00897 2A0118 polyol permease family

Probab=99.84  E-value=1.9e-17  Score=159.32  Aligned_cols=311  Identities=15%  Similarity=0.143  Sum_probs=178.2

Q ss_pred             CcchhhHHHHHHHHHHHHHH---hh-cccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHH-
Q 015488            1 MEEGSILGGALVTFVAGLLS---AF-SPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGS-   74 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~---~~-a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~-   74 (406)
                      +||+.+..+..+..+++++.   ++ .+++..+++.|++.|+|.+.. +....++.|..|+++||+.+++.+.+.++|. 
T Consensus        76 g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~  155 (402)
T TIGR00897        76 GPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIG  155 (402)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999988887654   23 358899999999999987654 3345567899999999999999999999997 


Q ss_pred             HHHHHhhHHhcccchhHHHHHHhhHHHHHH-HHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCC
Q 015488           75 VSEAALAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTN  153 (406)
Q Consensus        75 ~l~~~l~~~~~~~~~Wr~~f~i~~ip~~~~-~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  153 (406)
                      ++++.++..+.+..||+..++......++. .+..+..+|.|+   .+.+                              
T Consensus       156 ~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~------------------------------  202 (402)
T TIGR00897       156 VFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFT---PQHM------------------------------  202 (402)
T ss_pred             HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCC---cccc------------------------------
Confidence            578888777666678655544332222222 222233333211   0000                              


Q ss_pred             CcccccccCCccccchhhhccccccccccchhhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccc
Q 015488          154 DLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSI  232 (406)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  232 (406)
                        ++   + ++....          +   +..+..+ +|+.+    ...+..+.+...+++...+.|.+..+.+      
T Consensus       203 --~~---~-~~~~~~----------~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~p~~~~~~g------  253 (402)
T TIGR00897       203 --QT---R-EKFSEL----------G---KAATILFTNPNVL----LGGMVRIINTIGLFGFAVFLPMFVAELG------  253 (402)
T ss_pred             --cC---C-cchhhH----------H---HHHHHHHcChhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHcC------
Confidence              00   0 000000          0   0011111 22222    2222333344445555555554432111      


Q ss_pred             ccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHH-HHHHHHHHHHHHHHh-----hhhhHHHHHHHHHHHH
Q 015488          233 LLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMT-IMFIFVCIFLLPLVT-----LQSNILLTALLSGARM  306 (406)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  306 (406)
                           ..............++++++.+..++++||+|||+... .+.+...+....+..     ..+............+
T Consensus       254 -----~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~  328 (402)
T TIGR00897       254 -----FSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGI  328 (402)
T ss_pred             -----CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHH
Confidence                 01111112223345678899999999999999887653 222222222111111     1111111111222222


Q ss_pred             HhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhc
Q 015488          307 FSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI  380 (406)
Q Consensus       307 ~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  380 (406)
                      +..+. ........|..| +.|+++.|+.+....+++.++|.+.+.+.+..+....+.+.+++.+++++...|.
T Consensus       329 ~~~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       329 FLAGY-VPLAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHH-HHHHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            22222 222344567766 5799999999999999999999999988887766666777777777777766665

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.84  E-value=1e-18  Score=170.63  Aligned_cols=326  Identities=12%  Similarity=0.082  Sum_probs=180.5

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHH-HHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLI-LRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEA   78 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~-~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~   78 (406)
                      +||+.++.+.++..++.++++++++++.+++ .|+++|++.|.. .....++.|+.| ++|++..++.+.+..+|..+++
T Consensus        82 g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~  160 (455)
T TIGR00892        82 GCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLA  160 (455)
T ss_pred             CchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHH
Confidence            6899999999999999999999999998875 579999998864 344456678886 7899999999999999999999


Q ss_pred             HhhHHhcccchhHHHHHHhhHHHHHHHHHHHhc-cCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCccc
Q 015488           79 ALAWIVMPILTWRWLLALSAIPAFVLLIFIVFM-PESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDE  157 (406)
Q Consensus        79 ~l~~~~~~~~~Wr~~f~i~~ip~~~~~~~~~~~-pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (406)
                      .+...+.+..|||+.|++.++..++..+..+++ |+.+...  +.+.++ .         ++.  ++     +    .+.
T Consensus       161 ~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~-~---------~~~--~~-----~----~~~  217 (455)
T TIGR00892       161 PLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQR--VSKSKS-K---------EGL--PP-----D----GST  217 (455)
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCcccc--cccccc-c---------ccC--CC-----C----Ccc
Confidence            988888778899999999988766554433333 3322100  000000 0         000  00     0    000


Q ss_pred             ccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccC
Q 015488          158 EFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSEN  237 (406)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  237 (406)
                      +  +.+.+.    ..++    ..+...+..+.+++++.    .....+...+.++....+.+.+..+.           +
T Consensus       218 ~--~~~~~~----~~~~----~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~l~~~~~~~-----------g  272 (455)
T TIGR00892       218 K--KLSKKS----TAEK----INRFLDFSLFTHRGFLV----YLSGNVIMFLGFFAPIIFLVPYAKDK-----------G  272 (455)
T ss_pred             c--cccccc----hhhh----hhhhcchHHhcCchHHH----HHHHHHHHHHHccchHHHHHHHHHHc-----------C
Confidence            0  000000    0000    00000111222233321    11112222223333332322222111           0


Q ss_pred             ccchhhHHHHHHHHhhhhHHHHHHHHHHhhh--chHHHHHH--HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhh
Q 015488          238 VQDASVYINVFITSFAELPGLLTAALLVDRV--GRKLSMTI--MFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFI  313 (406)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~--grR~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (406)
                      ..............++.+++..+++++.||.  ++|+....  +.+..++..+......+............+......+
T Consensus       273 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~  352 (455)
T TIGR00892       273 VDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGA  352 (455)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHH
Confidence            1111112223344566677888899999973  33433322  2222222222222222222222222222222233345


Q ss_pred             hhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhch-hhHHHHHHHHHHHHHHH
Q 015488          314 IANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-QTAAILLLEALIVLSVV  375 (406)
Q Consensus       314 ~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~i~~~  375 (406)
                      ..+.+..|.+|.+.|+++.|+.+....+|++++|.+.+.+.+..+ ....+.+.++..+++++
T Consensus       353 ~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       353 LLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            567788899999999999999999999999999999887776553 33445555555555444

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.83  E-value=3.7e-19  Score=171.81  Aligned_cols=301  Identities=18%  Similarity=0.250  Sum_probs=173.9

Q ss_pred             hhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhH
Q 015488            4 GSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAW   82 (406)
Q Consensus         4 ~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~   82 (406)
                      +.+....+.+.+.+++++..+|++.+++.|+++|+..++. +....++.-|+.+++||+.++++..+.++|.++++++++
T Consensus       112 ~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~  191 (495)
T KOG2533|consen  112 KGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAY  191 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHH
Confidence            3456666777777778888999999999999999999887 456667899999999999999999999999999999999


Q ss_pred             Hh------cccchhHHHHHHhhHHHHHH-HHHHHhccCCcc--hhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCC
Q 015488           83 IV------MPILTWRWLLALSAIPAFVL-LIFIVFMPESPR--YLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTN  153 (406)
Q Consensus        83 ~~------~~~~~Wr~~f~i~~ip~~~~-~~~~~~~pESp~--~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  153 (406)
                      .+      ....||||+|++.++..++. ++.++++|+.|.  |..++++.+-   +.+++++.+..+            
T Consensus       192 g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~---~~~~~~~~~~~~------------  256 (495)
T KOG2533|consen  192 GVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKEL---VVERLRESPSGG------------  256 (495)
T ss_pred             HhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHH---HHHHHHhccCCC------------
Confidence            85      34569999999999887776 567778999998  3332211111   111111111000            


Q ss_pred             CcccccccCCccccchhhhccccccccccchhh-hccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccc
Q 015488          154 DLDEEFSTSEETPLLSSARKRTTVRKSGFSSFL-MLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSI  232 (406)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  232 (406)
                       .++                     +.+.+++. .+..|+.|.    ..+.+++.....|+...|.|.+..+..      
T Consensus       257 -~~~---------------------~~~~~~~~~a~~dp~vw~----~~l~~~~~~lv~~~~~~~lpl~l~~~~------  304 (495)
T KOG2533|consen  257 -IEN---------------------KFKWKGFKEALKDPGVWP----FSLCYFFLKLVNYGFSYWLPLYLKSNG------  304 (495)
T ss_pred             -ccc---------------------ccCHHHHHHHHhchhHHH----HHHHHHHHhhccccHHHHHHHHHHcCC------
Confidence             000                     00011222 223343332    333334444444555555554432200      


Q ss_pred             ccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhh----hchHHHHHHHHHHHHHHH-HHHHhhhhhHHHHHHHHHHHHH
Q 015488          233 LLSENVQDASVYINVFITSFAELPGLLTAALLVDR----VGRKLSMTIMFIFVCIFL-LPLVTLQSNILLTALLSGARMF  307 (406)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr----~grR~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  307 (406)
                          +..............++++++.+++++++||    ..+|........+..... ..+...................
T Consensus       305 ----~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~  380 (495)
T KOG2533|consen  305 ----GYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYG  380 (495)
T ss_pred             ----CcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchh
Confidence                0001111123344567789999999999999    566665555443333322 2222222111111111111111


Q ss_pred             hhhhhhhhhhhcccccCcchhhHHHhHHHHhH-hHHHHHHHHHHHHHhh
Q 015488          308 SMGTFIIANIFAPEIYPTSMRSTGAGVAYAVG-RIGGMVCPLVAVGLVT  355 (406)
Q Consensus       308 ~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~-~~g~~~~p~~~~~l~~  355 (406)
                      .............+....+.|..+....+..+ ..++.++|.+......
T Consensus       381 ~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~a  429 (495)
T KOG2533|consen  381 LIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDA  429 (495)
T ss_pred             hHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccC
Confidence            22223445555666666666655555555544 4567777776543333

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.83  E-value=2e-17  Score=158.50  Aligned_cols=317  Identities=11%  Similarity=0.036  Sum_probs=187.0

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      +||+.++++.++..+++++++++++.   ++.|+++|++.+.. +....++.|+.|+++|+++.++.+....+|.+++|.
T Consensus        66 grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~  142 (393)
T PRK11195         66 PKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTV  142 (393)
T ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999988887777664   78999999998775 556778999999999999999999999999999999


Q ss_pred             hhHHhcccchhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 015488           80 LAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEF  159 (406)
Q Consensus        80 l~~~~~~~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (406)
                      +++.+.+. .|+..+.+.+...++..+..+.+||+|+....  +.++..+.++...                        
T Consensus       143 lgG~l~~~-~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~------------------------  195 (393)
T PRK11195        143 LGGALADP-HAEAALAVCALIYLLAALFNLFIPRLGARRPG--QSWNPIALLRDFF------------------------  195 (393)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCcccccc--cCCCHHHHHHHHH------------------------
Confidence            99887664 48888777665555555556778988753110  0000000000000                        


Q ss_pred             ccCCccccchhhhccccccccccchhhhccChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCc
Q 015488          160 STSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTI-LLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENV  238 (406)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  238 (406)
                                             ...+.+++++..+... ...+.+.......+....+.+...+              .
T Consensus       196 -----------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg--------------~  238 (393)
T PRK11195        196 -----------------------HACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALG--------------I  238 (393)
T ss_pred             -----------------------HHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------------C
Confidence                                   0011112222222222 1122222222223333333332211              1


Q ss_pred             cchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 015488          239 QDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIF  318 (406)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (406)
                      .............++.++|++..+.+.||.++|+.+..+... ++....+....+.+..........+............
T Consensus       239 s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~  317 (393)
T PRK11195        239 TLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILM-GLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNAL  317 (393)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence            111222233444567788888899999998888777665433 2222222222222212122212222211122334455


Q ss_pred             cccccCcch-hhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccCC
Q 015488          319 APEIYPTSM-RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  386 (406)
Q Consensus       319 ~~El~p~~~-R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~  386 (406)
                      ..|.-|.+. ++.+.++.+....++..++..+... .+..+-...+++.+...+++..+.+.++...++
T Consensus       318 ~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (393)
T PRK11195        318 LQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSL-LVKLGVPVVAVIVGFGLLVALAMALLWRWHRRN  385 (393)
T ss_pred             HHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            567766655 7999999999999998888877664 344555555666666666777777776544333

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.82  E-value=9.7e-17  Score=152.95  Aligned_cols=115  Identities=19%  Similarity=0.318  Sum_probs=99.3

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      +||+.+..+.++..++..+..+++++..+++.|++.|++.+.. +....++.|+.|+++|++..++.+.+..+|..+++.
T Consensus        54 g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  133 (377)
T PRK11102         54 GRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPI  133 (377)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999988765 345667899999999999999999999999999999


Q ss_pred             hhHHhcccchhHHHHHHhhHHHHHH-HHHHHhccCCc
Q 015488           80 LAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMPESP  115 (406)
Q Consensus        80 l~~~~~~~~~Wr~~f~i~~ip~~~~-~~~~~~~pESp  115 (406)
                      ++..+.+..+||+.|++.++..++. .+..+.+||++
T Consensus       134 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (377)
T PRK11102        134 IGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL  170 (377)
T ss_pred             HHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence            9888877789999999887776654 44556677764

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.81  E-value=3.8e-17  Score=177.44  Aligned_cols=320  Identities=14%  Similarity=0.020  Sum_probs=180.6

Q ss_pred             CcchhhHHHHHHHHHHHHHH---hhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLS---AFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVS   76 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~---~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l   76 (406)
                      +||+.++++.++..+..++.   ..+++++.+++.|+++|++.|.. ++...++.|++|+++|++.+++.+.+..+|.++
T Consensus        75 grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~l  154 (1146)
T PRK08633         75 SKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILA  154 (1146)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHH
Confidence            68999988887666555443   45578999999999999998875 455678999999999999999999999999999


Q ss_pred             HHHhhHHhccc---------chhHHHHHHhhHH-HHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCC
Q 015488           77 EAALAWIVMPI---------LTWRWLLALSAIP-AFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGN  146 (406)
Q Consensus        77 ~~~l~~~~~~~---------~~Wr~~f~i~~ip-~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~  146 (406)
                      ++.++..+...         .+|++.+.+..+. .++.++..+.+||+|++...+++.                      
T Consensus       155 g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------  212 (1146)
T PRK08633        155 GTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDK----------------------  212 (1146)
T ss_pred             HHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccc----------------------
Confidence            99998877654         2455555544433 333445566789887642110000                      


Q ss_pred             CcCCCCCCcccccccCCccccchhhhccccccccccchhhhccChh-hHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcc
Q 015488          147 LTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPR-FFKTTILLWVLYFGNSF-VYYGIVLLASELSGS  224 (406)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~  224 (406)
                               .   ....   .           +.....+..+++++ .+...+...+.++.... ..+...++...+.  
T Consensus       213 ---------~---~~~~---~-----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--  264 (1146)
T PRK08633        213 ---------K---KYLF---P-----------KLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLG--  264 (1146)
T ss_pred             ---------c---cccc---H-----------HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC--
Confidence                     0   0000   0           00000122233322 22222111222221111 1111111111110  


Q ss_pred             CCCCCcccccccCccch-hhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 015488          225 QSKCSSSILLSENVQDA-SVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSG  303 (406)
Q Consensus       225 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (406)
                                   .... ..........++.++|.++.+++.||.++|+.+.++.++.++..+.+....+.....+..+.
T Consensus       265 -------------~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (1146)
T PRK08633        265 -------------LDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFL  331 (1146)
T ss_pred             -------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence                         0111 12223344456678899999999999999887776655554444433332222222222222


Q ss_pred             HHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHHHHHHHHhccc
Q 015488          304 ARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC-HQTAAILLLEALIVLSVVVILLIPF  382 (406)
Q Consensus       304 ~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~  382 (406)
                      ..++..........+..|..|.+.|+++.|+.+.+..+++++++.+.+.+.... +....+.+.+.++++..++.+...|
T Consensus       332 ~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (1146)
T PRK08633        332 FGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLYTLLLLP  411 (1146)
T ss_pred             HHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            222222334456778889999999999999999999988877776654333211 1222344444444444444333333


Q ss_pred             c
Q 015488          383 E  383 (406)
Q Consensus       383 e  383 (406)
                      +
T Consensus       412 ~  412 (1146)
T PRK08633        412 D  412 (1146)
T ss_pred             H
Confidence            3

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.80  E-value=1.6e-16  Score=153.16  Aligned_cols=116  Identities=18%  Similarity=0.281  Sum_probs=100.3

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      +||+.++.+.+++.++++++++++|++.++++|+++|++.+... ....+..|+.|+++|++.++.......+|..+++.
T Consensus        79 Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  158 (413)
T PRK15403         79 GRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPL  158 (413)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999887543 34556789999999999999999999999999999


Q ss_pred             hhHHhcccchhHHHHHHhhHHHHHHHH-HHHhccCCcc
Q 015488           80 LAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPESPR  116 (406)
Q Consensus        80 l~~~~~~~~~Wr~~f~i~~ip~~~~~~-~~~~~pESp~  116 (406)
                      ++..+.+..+||+.|++.++..++..+ ..+.+||+++
T Consensus       159 lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        159 SGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            998887778999999999888776644 3556888754

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.80  E-value=8.3e-18  Score=162.02  Aligned_cols=324  Identities=19%  Similarity=0.281  Sum_probs=197.5

Q ss_pred             cchhhHHHHHHHHHHHHHHhhc--ccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHH
Q 015488            2 EEGSILGGALVTFVAGLLSAFS--PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEA   78 (406)
Q Consensus         2 rr~~~~~~~~~~~i~~~~~~~a--~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~   78 (406)
                      =|+.+..+.++.+++++++=.+  .+++.+++.|+++|++.|.. ++.......|+|++||++..++...+.++|.+++-
T Consensus       102 ~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~m  181 (466)
T KOG2532|consen  102 ARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITM  181 (466)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4788889999999999887444  45668899999999999986 45556778999999999999999999999999999


Q ss_pred             HhhHHhccc-chhHHHHHHhhHHHHHHHHH-HHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCcc
Q 015488           79 ALAWIVMPI-LTWRWLLALSAIPAFVLLIF-IVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLD  156 (406)
Q Consensus        79 ~l~~~~~~~-~~Wr~~f~i~~ip~~~~~~~-~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  156 (406)
                      ++++.+-+. .||+..|++.++.+++..++ +++..|+|+-.   .+..+.  .++++.+....+               
T Consensus       182 p~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h---~~is~~--El~~I~~~k~~~---------------  241 (466)
T KOG2532|consen  182 PVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKH---PNISEK--ELKYIEKGKSEA---------------  241 (466)
T ss_pred             HhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccC---CCCCHH--HHHHHHhccccc---------------
Confidence            999888776 89999999999998887554 45667888731   111111  112221110000               


Q ss_pred             cccccCCccccchhhhccccccccccchhhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccc
Q 015488          157 EEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLS  235 (406)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  235 (406)
                          +.++            ..+-   .++.++ ++.    .+.+|+..++....++.+..+.|.+..+-          
T Consensus       242 ----~~~~------------~~~v---P~~~i~ts~~----vwai~~~~f~~~~~~~~l~~y~PtY~~~V----------  288 (466)
T KOG2532|consen  242 ----HVKK------------KPPV---PYKAILTSPP----VWAIWISAFGGNWGFYLLLTYLPTYLKEV----------  288 (466)
T ss_pred             ----ccCC------------CCCC---CHHHHHcCHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHH----------
Confidence                0000            0011   122222 232    23345555555555555555555443210          


Q ss_pred             cCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhch--------HHHH-HHHHHHHHHHHHHHHhhh-hhH-HHHHHHHHH
Q 015488          236 ENVQDASVYINVFITSFAELPGLLTAALLVDRVGR--------KLSM-TIMFIFVCIFLLPLVTLQ-SNI-LLTALLSGA  304 (406)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gr--------R~~~-~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~  304 (406)
                      ++.+..+......+..+...+..+++|.++||.-+        |+.+ .++....+++++.+.+.. .+. .++.++...
T Consensus       289 L~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~  368 (466)
T KOG2532|consen  289 LGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIA  368 (466)
T ss_pred             hCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHH
Confidence            01111222334456667788888999999998855        2333 344444455555444322 122 232222222


Q ss_pred             HHHhhhhhhhhhhhccccc-CcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhc---hhhHHHHHHHHHHHHHHHHHHhc
Q 015488          305 RMFSMGTFIIANIFAPEIY-PTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC---HQTAAILLLEALIVLSVVVILLI  380 (406)
Q Consensus       305 ~~~~~~~~~~~~~~~~El~-p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~---~~~~~~~~~~~~~~i~~~~~~~~  380 (406)
                       ....+.... ..+..-.- .+++-+...|+++.++.+.++++|.+.+.+....   .....|++.+++.+++.++..++
T Consensus       369 -~~~~g~~~~-Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  369 -IGLSGFNIS-GFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             -HHHcccchh-hhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence             222222222 22223333 6777899999999999999999999988776321   22345667777777776555444

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.80  E-value=2.2e-16  Score=150.85  Aligned_cols=300  Identities=16%  Similarity=0.132  Sum_probs=173.1

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      +||+.+..+.++..++..+.++++|++.+++.|+++|++.|... .....+.|..|+++|++.++.+..+..+|..+++.
T Consensus        69 g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  148 (381)
T PRK03633         69 GFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQL  148 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999987653 44456678899999999999999999999999999


Q ss_pred             hhHHhcccchhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCccccc
Q 015488           80 LAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEF  159 (406)
Q Consensus        80 l~~~~~~~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (406)
                      +...+.+...|...+....+...+..+.....+|++.                                     + ++  
T Consensus       149 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~-~~--  188 (381)
T PRK03633        149 LVSKVSTELMSVLPWVTGLVLAAILPLLFTRILNQQA-------------------------------------E-NH--  188 (381)
T ss_pred             HHhcccccccchHHHHHHHHHHHHHHHHHhcccCCCC-------------------------------------C-CC--
Confidence            8887655432322222111111111111111111100                                     0 00  


Q ss_pred             ccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCcc
Q 015488          160 STSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQ  239 (406)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  239 (406)
                         +.++               .  ...+.++..+. .....+..   .+.+.....+.|.+..+.           +..
T Consensus       189 ---~~~~---------------~--~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~lp~~~~~~-----------g~s  233 (381)
T PRK03633        189 ---DSTS---------------I--WPMLKLRQARL-GVNGCIIS---GIVLGSLYGLMPLYLNHQ-----------GMS  233 (381)
T ss_pred             ---CCCC---------------H--HHHHHhcchHH-HHHHHHHH---HHHHHHHHHHHHHHHHHc-----------CCC
Confidence               0000               0  00011122221 11111111   111111111223222111           011


Q ss_pred             chhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhc
Q 015488          240 DASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFA  319 (406)
Q Consensus       240 ~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (406)
                      ............+..+++.+..+++.||+|||+.+..+.....+...... .. ........ ..........+......
T Consensus       234 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~~-~~~~~~~~-l~g~~~~~~~p~~~~~~  310 (381)
T PRK03633        234 DASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-SQ-AAMAPALF-ILGAAGFTLYPVAMAWA  310 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-hh-HHHHHHHH-HHHHHHHhHHHHHHHHH
Confidence            11112223344567788999999999999999988766555444333222 11 11111111 11111223345566677


Q ss_pred             ccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHH
Q 015488          320 PEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVIL  378 (406)
Q Consensus       320 ~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~  378 (406)
                      .|..|.+.++.+.+..+....+|+.++|.+.+.+.+..+....|.+.+.+.++..+..+
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~  369 (381)
T PRK03633        311 CEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL  369 (381)
T ss_pred             HccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence            89999888777778877777899999999999888876655667777777666654443

>TIGR00901 2A0125 AmpG-related permease

Probab=99.80  E-value=4.2e-17  Score=154.30  Aligned_cols=276  Identities=11%  Similarity=0.093  Sum_probs=160.0

Q ss_pred             Ccchh-hHHHHHHHHHHHHHHhhc---ccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHH
Q 015488            1 MEEGS-ILGGALVTFVAGLLSAFS---PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSV   75 (406)
Q Consensus         1 ~rr~~-~~~~~~~~~i~~~~~~~a---~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~   75 (406)
                      ||||. ++.+.+...++..+.++.   .+...+....++.|++.+.. +....++.|++|+++|++..++...+..+|.+
T Consensus        54 Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~  133 (356)
T TIGR00901        54 GRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGML  133 (356)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHH
Confidence            57887 456777777777777777   35555677777777655543 34556789999999999999999999999999


Q ss_pred             HHHHhhHHhcccch--------hHHHHHHhhHHHHHHHHHHH-hccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCC
Q 015488           76 SEAALAWIVMPILT--------WRWLLALSAIPAFVLLIFIV-FMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGN  146 (406)
Q Consensus        76 l~~~l~~~~~~~~~--------Wr~~f~i~~ip~~~~~~~~~-~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~  146 (406)
                      +++.++..+.+..+        ||..|++.++..++..+..+ ..||+++..  +.+ ++..+                 
T Consensus       134 ~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~--~~~-~~~~~-----------------  193 (356)
T TIGR00901       134 LSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQEDA--SVP-KPLTQ-----------------  193 (356)
T ss_pred             HHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCccc--ccc-hhHHH-----------------
Confidence            99999887766666        99999999887777655544 457753210  000 00000                 


Q ss_pred             CcCCCCCCcccccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 015488          147 LTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQS  226 (406)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  226 (406)
                                         +.           +   ..+..+++++..+......+..+.....++....+.+.+..+. 
T Consensus       194 -------------------~~-----------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-  239 (356)
T TIGR00901       194 -------------------AV-----------L---KPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDM-  239 (356)
T ss_pred             -------------------HH-----------H---HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-
Confidence                               00           0   0111122111111122222222223333443333333221110 


Q ss_pred             CCCcccccccCccchhhH-HHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh--h--------hh-
Q 015488          227 KCSSSILLSENVQDASVY-INVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL--Q--------SN-  294 (406)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~--~--------~~-  294 (406)
                                +....... .......+..++|.++++++.||+|||+.+..+.++..+........  .        .. 
T Consensus       240 ----------g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (356)
T TIGR00901       240 ----------GFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHL  309 (356)
T ss_pred             ----------CCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchH
Confidence                      01111111 11222224567899999999999999988877666555443322221  1        11 


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHh
Q 015488          295 ILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGR  340 (406)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~  340 (406)
                      +..........+......+....+..|.+|++.|++..|+.++..+
T Consensus       310 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       310 LMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            1111111122223334566778899999999999999999887653

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.79  E-value=1.5e-16  Score=152.74  Aligned_cols=112  Identities=17%  Similarity=0.142  Sum_probs=95.0

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      +||+.+..+.++..++.++.+++++++.+++.|+++|++.+.. +....++.|+.|+++|++..++.+....+|..+++.
T Consensus        74 g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~  153 (400)
T PRK11646         74 GAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGAL  153 (400)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999987654 345567889999999999999999999999999999


Q ss_pred             hhHHhcccchhHHHHHHhhHHHHHHH-HHHHhccC
Q 015488           80 LAWIVMPILTWRWLLALSAIPAFVLL-IFIVFMPE  113 (406)
Q Consensus        80 l~~~~~~~~~Wr~~f~i~~ip~~~~~-~~~~~~pE  113 (406)
                      ++..+. .++||+.|++.++..++.. +..++.||
T Consensus       154 l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~  187 (400)
T PRK11646        154 LGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPA  187 (400)
T ss_pred             HHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            988877 6799999998877655543 33445555

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.79  E-value=1.8e-17  Score=157.33  Aligned_cols=116  Identities=18%  Similarity=0.260  Sum_probs=89.5

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcc-cHHHHHHHHHHhhccCCcchhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSP-NYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~-~~~~l~~~R~l~G~g~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      +||+.++.+.++..++.++.++++ +++.+++.|+++|++.+.......++.|+.|+++|++..++...+.++|..+++.
T Consensus        65 g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  144 (366)
T TIGR00886        65 GPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQF  144 (366)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHH
Confidence            689999999999999999999999 9999999999999986544445667899999999999999998777777777766


Q ss_pred             hhHHhcc----------cchhHHHH-HHhhHHH-HHHHHHHHhccCCcc
Q 015488           80 LAWIVMP----------ILTWRWLL-ALSAIPA-FVLLIFIVFMPESPR  116 (406)
Q Consensus        80 l~~~~~~----------~~~Wr~~f-~i~~ip~-~~~~~~~~~~pESp~  116 (406)
                      ++..+..          ..+||+.| +..++.. ++..+.....+|+|+
T Consensus       145 i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (366)
T TIGR00886       145 VMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPP  193 (366)
T ss_pred             HHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCc
Confidence            6544322          34899998 4434433 333445556788764

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.79  E-value=8e-16  Score=148.02  Aligned_cols=116  Identities=18%  Similarity=0.086  Sum_probs=90.1

Q ss_pred             Ccch-hhHHHHHHHHHHHHHHhhc---ccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHH
Q 015488            1 MEEG-SILGGALVTFVAGLLSAFS---PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSV   75 (406)
Q Consensus         1 ~rr~-~~~~~~~~~~i~~~~~~~a---~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~   75 (406)
                      +||| .++.+.++..++..+.++.   .+++.+.+..++.|+..+.. +....+..|+.|+++|++..++...+..+|.+
T Consensus        65 g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i  144 (402)
T PRK11902         65 GRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAML  144 (402)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHH
Confidence            3554 6777888887777777776   35677888887777655443 44566789999999999999999999999999


Q ss_pred             HHHHhhHHhccc-chhHHHHHHhhHHHHHHHHHHHhccCCcc
Q 015488           76 SEAALAWIVMPI-LTWRWLLALSAIPAFVLLIFIVFMPESPR  116 (406)
Q Consensus        76 l~~~l~~~~~~~-~~Wr~~f~i~~ip~~~~~~~~~~~pESp~  116 (406)
                      +++.+...+.+. .|||..|++.++..++..+..+++||+++
T Consensus       145 ~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~  186 (402)
T PRK11902        145 VSGGLALWLADRVLGWGNTYLLMAGLMLAGALTTLWAPEPEV  186 (402)
T ss_pred             HHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            999988877764 59999999988776665555667788754

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.79  E-value=5.4e-17  Score=148.93  Aligned_cols=309  Identities=19%  Similarity=0.189  Sum_probs=197.4

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHH---HHHHHHHHhhccCCcchhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYI---SLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   77 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~---~l~~~R~l~G~g~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   77 (406)
                      |-|+..+.+.++..+-.+..+++.+++   .+++.+.+.|++-|...+..++.++++||+++|.+++++. .-++|..+.
T Consensus        77 GgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~  155 (417)
T COG2223          77 GGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVA  155 (417)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHH
Confidence            347888888999999999998887666   9999999999997766677778999999999999999998 778888777


Q ss_pred             HHhhHHhcccch---hHHHHHHhhHHHHHH-HHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCC
Q 015488           78 AALAWIVMPILT---WRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTN  153 (406)
Q Consensus        78 ~~l~~~~~~~~~---Wr~~f~i~~ip~~~~-~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  153 (406)
                      ..++-.+....+   ||....+-.++.++. .+.++.+.|.|+...+++...                            
T Consensus       156 q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~----------------------------  207 (417)
T COG2223         156 QLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQL----------------------------  207 (417)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccc----------------------------
Confidence            777666655566   999988888777775 445566666655210000000                            


Q ss_pred             CcccccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccc
Q 015488          154 DLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSIL  233 (406)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  233 (406)
                        .                          .+++..++   .++++.+...|+...-.+-++..+.|.+..+..       
T Consensus       208 --~--------------------------~~~~~v~~---~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~f-------  249 (417)
T COG2223         208 --P--------------------------AQLKAVFS---NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQF-------  249 (417)
T ss_pred             --h--------------------------hHHHHHhc---CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence              0                          01111111   123344555555444444455555554432211       


Q ss_pred             cccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHHH
Q 015488          234 LSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ-------SNILLTALLSGARM  306 (406)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~  306 (406)
                       ..+..+..  .......+.+...-.++|+++||+|.|+.+...+....++........       +........+....
T Consensus       250 -g~~~~~Ag--~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~  326 (417)
T COG2223         250 -GLSPVTAG--LIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFV  326 (417)
T ss_pred             -CCChhhHH--HHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHH
Confidence             01111111  122333344555667899999999888877766665555544433221       12222222333333


Q ss_pred             HhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchh-hHHHHHHHHHHHHHHHHHHhc
Q 015488          307 FSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQ-TAAILLLEALIVLSVVVILLI  380 (406)
Q Consensus       307 ~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~-~~~~~~~~~~~~i~~~~~~~~  380 (406)
                      +........+-..+..||. .-+...|+..++|.+|++.-|..++...+.++. ...+.++..+++++.+.....
T Consensus       327 ~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~  400 (417)
T COG2223         327 FAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL  400 (417)
T ss_pred             HhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333456677788888877 457888999999999999999999888777763 455677777777776654443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.77  E-value=8.6e-16  Score=147.79  Aligned_cols=283  Identities=15%  Similarity=0.128  Sum_probs=175.2

Q ss_pred             CcchhhHHHHHHHHHHHHHHhh---cccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAF---SPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVS   76 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~---a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l   76 (406)
                      +||+.++.+.++.+++..+...   .+|++.+.+.|++.|+|.|.. ....++..|..|+++|++..++.+.+.++|..+
T Consensus        66 G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~  145 (410)
T TIGR00885        66 SYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSII  145 (410)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999877543   468999999999999999875 455678889999999999999999999999999


Q ss_pred             HHHhhHHhcc--------------------------cchhHHHHHHhhHHHHHHHHHHHh--ccCCcchhhccCChhhHH
Q 015488           77 EAALAWIVMP--------------------------ILTWRWLLALSAIPAFVLLIFIVF--MPESPRYLCTKGRITDAH  128 (406)
Q Consensus        77 ~~~l~~~~~~--------------------------~~~Wr~~f~i~~ip~~~~~~~~~~--~pESp~~l~~~~~~~~a~  128 (406)
                      ++.+...+..                          ..+||++|.+.++..++..+...+  +||.++        ++  
T Consensus       146 g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~--------~~--  215 (410)
T TIGR00885       146 GMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH--------SD--  215 (410)
T ss_pred             HHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--------cc--
Confidence            9988765521                          136999999887766554433322  333211        00  


Q ss_pred             HHHHHHHHHcCCCCCCCCCcCCCCCCcccccccCCccccchhhhccccccccccchhhhcc-ChhhHHHHHHHHHHHHHH
Q 015488          129 NILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGN  207 (406)
Q Consensus       129 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  207 (406)
                                                 +++ .+.++                   .....+ +|+.+. ..+..+.+.+.
T Consensus       216 ---------------------------~~~-~~~~~-------------------~~~~~~~~~~~~~-~~l~~f~yvg~  247 (410)
T TIGR00885       216 ---------------------------AKQ-ISFSA-------------------SLSRLARIRHYRE-GVIAQFFYVGV  247 (410)
T ss_pred             ---------------------------ccc-ccchh-------------------hHHHHHhChhHHH-HHHHHHHHHHH
Confidence                                       000 00000                   000111 122222 12222222222


Q ss_pred             HHHHHHHHHHHHhhhccCCCCCcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 015488          208 SFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLP  287 (406)
Q Consensus       208 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~  287 (406)
                      ....+   .+.+....+...       .........+....  -....+|.++++++.||+++|+.+..+.+.+.++...
T Consensus       248 e~~~~---s~l~~y~~~~~~-------~~~~~~a~~~~~~~--~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll  315 (410)
T TIGR00885       248 QIMCW---TFIIQYAVRLIP-------GMTAGFAANYNIGA--MVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLG  315 (410)
T ss_pred             HHHHH---HHHHHHHhhccC-------CCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            22222   112211111000       00001111122121  2456789999999999999999887776666655444


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhh
Q 015488          288 LVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS  356 (406)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~  356 (406)
                      .....+... ...+....++....++..+....+.++++.+..+.++..++  +|+.+.|.+.+.+.|.
T Consensus       316 ~~~~~~~~~-~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~  381 (410)
T TIGR00885       316 SIFAGGHVG-LYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDM  381 (410)
T ss_pred             HHHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHH
Confidence            433222222 22333344556677899999999999998887777777766  8999999999988874

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10133 L-fucose transporter; Provisional

Probab=99.76  E-value=2.1e-15  Score=146.33  Aligned_cols=298  Identities=14%  Similarity=0.080  Sum_probs=168.2

Q ss_pred             CcchhhHHHHHHHHHHHHHH---hhcccHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLS---AFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVS   76 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~---~~a~~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l   76 (406)
                      |||+.+..+.+++.++.+++   ++++|++.++++|+++|+|.|... ....++.|+.|+++|++.++..+.++.+|..+
T Consensus        89 G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~  168 (438)
T PRK10133         89 SYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAII  168 (438)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999775   578999999999999999998764 45667788887887777889999999999999


Q ss_pred             HHHhhHHhc--c----------------c--------chhHHHHHHh-hHHHHHHHH-HHHhccCCcchhhccCChhhHH
Q 015488           77 EAALAWIVM--P----------------I--------LTWRWLLALS-AIPAFVLLI-FIVFMPESPRYLCTKGRITDAH  128 (406)
Q Consensus        77 ~~~l~~~~~--~----------------~--------~~Wr~~f~i~-~ip~~~~~~-~~~~~pESp~~l~~~~~~~~a~  128 (406)
                      ++.++..+.  .                .        .+||++|+.. .+..++..+ ....+||.|.     ++.    
T Consensus       169 g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~-----~~~----  239 (438)
T PRK10133        169 AVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS-----DNH----  239 (438)
T ss_pred             HHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----ccc----
Confidence            988765332  0                0        2567677543 333333222 2333454211     000    


Q ss_pred             HHHHHHHHHcCCCCCCCCCcCCCCCCcccccccCCccccchhhhccccccccccchhhhcc-ChhhHHHHHHHHHHHHHH
Q 015488          129 NILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGN  207 (406)
Q Consensus       129 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  207 (406)
                                                 ++   + ++.+.              .+..+.++ +|+.+...+.. +.+.  
T Consensus       240 ---------------------------~~---~-~~~~~--------------~~~~~~ll~~~~~~~~~l~~-~~~~--  271 (438)
T PRK10133        240 ---------------------------SD---A-KQGSF--------------SASLSRLARIRHWRWAVLAQ-FCYV--  271 (438)
T ss_pred             ---------------------------cc---c-cccch--------------hhhHHHHHhCchHHHHHHHH-HHHH--
Confidence                                       00   0 00000              00111122 23333222111 1111  


Q ss_pred             HHHHHHHHHHHHhh-hccCCCCCcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q 015488          208 SFVYYGIVLLASEL-SGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLL  286 (406)
Q Consensus       208 ~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~  286 (406)
                       ...++...|.+.. ..+.          .+..............++.++|..+++++.||+|||+.+..+.++..+.+.
T Consensus       272 -~~~~~~~~~~~~~l~~~~----------~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~  340 (438)
T PRK10133        272 -GAQTACWSYLIRYAVEEI----------PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCL  340 (438)
T ss_pred             -HHHHHHHHHHHHHHhhhc----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence             1111111122211 1100          011111122233444567789999999999999999988776555544333


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhch-hhHHHHH
Q 015488          287 PLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-QTAAILL  365 (406)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~-~~~~~~~  365 (406)
                      ........ .....+....++....++..+....|.+|.+ .+++.++.. ...+|+.+.|.+.+.+.+..+ ....+++
T Consensus       341 ~~~~~~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v  417 (438)
T PRK10133        341 ISAFAGGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELI  417 (438)
T ss_pred             HHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHH
Confidence            22222221 1222223334445566788888888988875 566777775 344677788888887766554 3344544


Q ss_pred             HHHH
Q 015488          366 LEAL  369 (406)
Q Consensus       366 ~~~~  369 (406)
                      ...+
T Consensus       418 ~~~~  421 (438)
T PRK10133        418 PALC  421 (438)
T ss_pred             HHHH
Confidence            3333

>PRK10054 putative transporter; Provisional

Probab=99.75  E-value=1e-15  Score=146.89  Aligned_cols=299  Identities=12%  Similarity=0.083  Sum_probs=171.8

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      +||+.++.+.+...++.++.++++|++.++++|++.|.+.+.. +....++.|..|+++|++..++.....++|..+++.
T Consensus        71 g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~  150 (395)
T PRK10054         71 DKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPP  150 (395)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999888888888899999999999999888765543 345678899999999999999999999999999999


Q ss_pred             hhHHhcccchhHHHHHHhhHHHHHHH-HHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 015488           80 LAWIVMPILTWRWLLALSAIPAFVLL-IFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEE  158 (406)
Q Consensus        80 l~~~~~~~~~Wr~~f~i~~ip~~~~~-~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (406)
                      ++..+.. .+||..|.+.++..++.. +..+.+||+++    +++.++ .                            + 
T Consensus       151 l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~----~~~~~~-~----------------------------~-  195 (395)
T PRK10054        151 LGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEK----AIATET-G----------------------------S-  195 (395)
T ss_pred             HHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhcccc----ccccch-h----------------------------h-
Confidence            9887654 689999998877666543 33444665432    000000 0                            0 


Q ss_pred             cccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCc
Q 015488          159 FSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENV  238 (406)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  238 (406)
                          +    .     +         ....+.+|+.+.-.....+..+...........+.+....            ...
T Consensus       196 ----~----~-----~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------------~~~  241 (395)
T PRK10054        196 ----V----W-----S---------PSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVAD------------SDF  241 (395)
T ss_pred             ----h----h-----h---------hhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcc------------cch
Confidence                0    0     0         0000111222211111111111111000011111111100            000


Q ss_pred             cchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHhhhhhhhhhh
Q 015488          239 QDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLT-ALLSGARMFSMGTFIIANI  317 (406)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  317 (406)
                      .................+.....+.+.||.++|+.+..+..+..+....+....++.... ..............+....
T Consensus       242 ~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~  321 (395)
T PRK10054        242 AEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYM  321 (395)
T ss_pred             HHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            011111122222233445556778899999999988776554444333332221221111 1111111112222345566


Q ss_pred             hcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 015488          318 FAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEAL  369 (406)
Q Consensus       318 ~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~  369 (406)
                      ...|..|++.|+++.+.. +.+++|..++|.+.+.+.+..+....+.+++.+
T Consensus       322 ~~~~~~p~~~~~~~~~~~-~~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~  372 (395)
T PRK10054        322 LIDHIAPPGMKASYFSAQ-SLGWLGAAINPLVSGVILTTLPPWSLFVILALA  372 (395)
T ss_pred             HHHHhCCcccceehHhHH-HHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHH
Confidence            778899999999998864 467789999999999888866543334444333

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.75  E-value=8.1e-15  Score=140.68  Aligned_cols=116  Identities=13%  Similarity=0.180  Sum_probs=97.6

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      +||+.++.+..+..++.....+++|++.+++.|++.|++.+... ....+..|..|+++|++..+..+.+..+|.++++.
T Consensus        71 grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  150 (394)
T PRK11652         71 GRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPL  150 (394)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999887653 33445679999999999999999999999999999


Q ss_pred             hhHHhcccchhHHHHHHhhHHHHHH-HHHHHhccCCcc
Q 015488           80 LAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMPESPR  116 (406)
Q Consensus        80 l~~~~~~~~~Wr~~f~i~~ip~~~~-~~~~~~~pESp~  116 (406)
                      ++..+.+..+||+.|++.++..++. .+..++.||+|+
T Consensus       151 i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  188 (394)
T PRK11652        151 IGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP  188 (394)
T ss_pred             HHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence            9888877789999999987766554 344566788754

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.75  E-value=7.9e-16  Score=166.91  Aligned_cols=291  Identities=9%  Similarity=-0.047  Sum_probs=167.0

Q ss_pred             CcchhhHH---HHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILG---GALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVS   76 (406)
Q Consensus         1 ~rr~~~~~---~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l   76 (406)
                      +||+.+..   ..+............+|++.++++|+++|++.+.. ++...++.|+.|+++|++++++.+.+.++|.++
T Consensus        80 ~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~i  159 (1140)
T PRK06814         80 DKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILL  159 (1140)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHH
Confidence            46665432   22222333333344589999999999999988765 566778899999999999999999999999999


Q ss_pred             HHHhhHHhcccchhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCcc
Q 015488           77 EAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLD  156 (406)
Q Consensus        77 ~~~l~~~~~~~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  156 (406)
                      ++.+++++....+||+.|+...+..++.++..+++||++.-  .+++.                                
T Consensus       160 gp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--------------------------------  205 (1140)
T PRK06814        160 GTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNA--APDLK--------------------------------  205 (1140)
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCC--CCCCe--------------------------------
Confidence            99999999888899999966555555555666677776430  00000                                


Q ss_pred             cccccCCccccchhhhccccccccccchhhhccC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccc
Q 015488          157 EEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS-PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLS  235 (406)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  235 (406)
                      .     +.. ..+.          ....+...++ +..+...+..+..++    .++....+.|.+....          
T Consensus       206 ~-----~~~-~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~----------  255 (1140)
T PRK06814        206 I-----DRN-IIRS----------TITLLKYAKADKRIWLAILGISWFWL----VGAVVLSQLPLLAKET----------  255 (1140)
T ss_pred             e-----ccc-hHHH----------HHHHHHHHhcCchHHHHHHHHHHHHH----HHHHHHHHhHHHHHHH----------
Confidence            0     000 0000          0001112222 222222221111111    1122222222221100          


Q ss_pred             cCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh--------------------hhhH
Q 015488          236 ENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL--------------------QSNI  295 (406)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~--------------------~~~~  295 (406)
                      .+..............++.++|.++.++++|+.++++.+..+.++.+++.+.+...                    .+.+
T Consensus       256 ~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (1140)
T PRK06814        256 LGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGW  335 (1140)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccH
Confidence            00111112223345557788899999999988776665544433333322211111                    1111


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhh
Q 015488          296 LLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT  355 (406)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~  355 (406)
                      ......+...++.........++..+..|.+.|+++.|+.+.+..++..+++.+.+.+.+
T Consensus       336 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~  395 (1140)
T PRK06814        336 RILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA  395 (1140)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111111222222223334567888999999999999999999999999898888776654

>TIGR00889 2A0110 nucleoside transporter

Probab=99.75  E-value=5.4e-15  Score=142.78  Aligned_cols=326  Identities=12%  Similarity=0.055  Sum_probs=174.5

Q ss_pred             cchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc-hhhH----HHHH----hhcCCCcchhHHHHHHHHHHH
Q 015488            2 EEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFF----SWFM----EFVPPSNRGKWMVVFSTFWTF   72 (406)
Q Consensus         2 rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~----~~~~----E~~p~~~Rg~~~~~~~~~~~~   72 (406)
                      ||+.+.++.+...++..+..+.+++..+.+.|++.|++.+.. +...    .+..    |......|.+..+.      +
T Consensus        68 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~------l  141 (418)
T TIGR00889        68 AQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGT------I  141 (418)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehh------H
Confidence            477888888888888888889999999999999999876543 2222    2222    33333345555542      4


Q ss_pred             HHHHHHHhhHHhcccchhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCC
Q 015488           73 GSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGT  152 (406)
Q Consensus        73 G~~l~~~l~~~~~~~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~  152 (406)
                      |.++++.++..+.....|+..+ +.++..++..+..+.+||+|+-   +++.++                          
T Consensus       142 G~~ig~~l~g~l~~~~~~~~f~-~~~~~~~~~~~~~~~~~e~~~~---~~~~~~--------------------------  191 (418)
T TIGR00889       142 GFIAAMWAVSLLDIELSNIQLY-ITAGSSALLGVFALTLPDIPVA---KSTAKM--------------------------  191 (418)
T ss_pred             HHHHHHHHHHHhcccchhHHHH-HHHHHHHHHHHHHhcCCCCCCC---cccccc--------------------------
Confidence            5666666665554344576544 4444444444456678988641   000000                          


Q ss_pred             CCcccccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccc
Q 015488          153 NDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSI  232 (406)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  232 (406)
                         +.     ++  .     .     +..  ....+++|+++.-.+..++...... .++  .+..+.+.. .+..  ..
T Consensus       192 ---~~-----~~--~-----~-----~~~--~~~~~k~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~-~g~~--~~  243 (418)
T TIGR00889       192 ---SI-----KV--M-----L-----GLD--AFILFKNKRMAIFFFFSMLLGAPLQ-ITN--IFGNGFLHE-FGRN--PE  243 (418)
T ss_pred             ---CH-----HH--H-----h-----hhh--HHHHhcCCCeeeHHHHHHHHHhHHH-HHH--HhHHHHHHH-hccc--cc
Confidence               00     00  0     0     000  0001112222211111111111111 111  111111110 0000  00


Q ss_pred             ccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhh-h---HHHHHHHHHHHHHh
Q 015488          233 LLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQS-N---ILLTALLSGARMFS  308 (406)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~  308 (406)
                      . ..............+..+.++++.+..++++||+|||+.+..+.+..++....+..... .   ..............
T Consensus       244 ~-~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~  322 (418)
T TIGR00889       244 F-ADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAF  322 (418)
T ss_pred             c-cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHH
Confidence            0 00000011122334445677888899999999999999998887766655433332111 1   11111111111111


Q ss_pred             hhhhhhhhhhcccccCcchhhHHHhHHHH-hHhHHHHHHHHHHHHHhhhch------hhHHHHHHHHHHHHHHHHHHhcc
Q 015488          309 MGTFIIANIFAPEIYPTSMRSTGAGVAYA-VGRIGGMVCPLVAVGLVTSCH------QTAAILLLEALIVLSVVVILLIP  381 (406)
Q Consensus       309 ~~~~~~~~~~~~El~p~~~R~~a~g~~~~-~~~~g~~~~p~~~~~l~~~~~------~~~~~~~~~~~~~i~~~~~~~~~  381 (406)
                      ....+....+.+|.+|++.|+++.|+.+. ...+|+.++|.+.+.+.+..+      ....|.+.+++++++++..+++.
T Consensus       323 ~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~  402 (418)
T TIGR00889       323 DFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFF  402 (418)
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            22234556778999999999999999974 567899999999998887643      23456777778788888888887


Q ss_pred             cccCCcccccc
Q 015488          382 FETKGKELVNT  392 (406)
Q Consensus       382 ~et~~~~~~~~  392 (406)
                      +|+++.--.|.
T Consensus       403 ~~~~~~~~~~~  413 (418)
T TIGR00889       403 KYSHNAIKVDD  413 (418)
T ss_pred             CCcccCCCCcc
Confidence            88876644433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00896 CynX cyanate transporter

Probab=99.74  E-value=3.6e-15  Score=141.00  Aligned_cols=283  Identities=18%  Similarity=0.175  Sum_probs=164.6

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      +||+.+.++.+...++.++. .+++...+++.|++.|++.|... ....+..|+.| ++|++..+.++.+..+|..+++.
T Consensus        63 g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~  140 (355)
T TIGR00896        63 GEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAA  140 (355)
T ss_pred             CchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHH
Confidence            58999999888888877777 78899999999999999987643 33445678886 68999999999999999999988


Q ss_pred             hhHHhcccc--hhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCccc
Q 015488           80 LAWIVMPIL--TWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDE  157 (406)
Q Consensus        80 l~~~~~~~~--~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (406)
                      +...+.+..  +||+.|.+.++..++..  ..++||+++-      .+                 +++          +.
T Consensus       141 ~~~~l~~~~~~~w~~~f~~~~~~~~~~~--~~~~~~~~~~------~~-----------------~~~----------~~  185 (355)
T TIGR00896       141 ATVPLAQHSGGHWQQALAWWALPALLAL--LAWIPQVRRR------VA-----------------ANQ----------TT  185 (355)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHH--HHHhhhhccc------cC-----------------CCC----------CC
Confidence            877665543  49999887665544332  2334554320      00                 000          00


Q ss_pred             ccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccC
Q 015488          158 EFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSEN  237 (406)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  237 (406)
                         . +               + .  ....+.+++.+.    ...........+++...+.|.+..+.+           
T Consensus       186 ---~-~---------------~-~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~lp~~~~~~g-----------  228 (355)
T TIGR00896       186 ---T-R---------------L-T--PVRIWRSPLAWQ----VTVFFGLQSGLYYSLIGWLPAILISHG-----------  228 (355)
T ss_pred             ---C-C---------------C-C--CchhhcCHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHcC-----------
Confidence               0 0               0 0  000111222221    111222223344444444443322110           


Q ss_pred             ccchhhHHHHHHHHhhhhHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhh
Q 015488          238 VQDASVYINVFITSFAELPGLLTAALLVDRV-GRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIAN  316 (406)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~-grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (406)
                      ..............++.+++.+..+++.||+ +||..+..+..+..+....+....+..... ......+.....++...
T Consensus       229 ~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~  307 (355)
T TIGR00896       229 ASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLAL  307 (355)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHHH
Confidence            1111112233344577889999999999999 556555555444444333332222211111 11111222222334434


Q ss_pred             hhcc-cccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhch
Q 015488          317 IFAP-EIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH  358 (406)
Q Consensus       317 ~~~~-El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~  358 (406)
                      .... +..+++.++...++.+.++.+++.++|.+.+.+.+..+
T Consensus       308 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       308 TLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4443 44456778999999999999999999999998877554

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.73  E-value=4.3e-15  Score=144.51  Aligned_cols=290  Identities=16%  Similarity=0.068  Sum_probs=163.3

Q ss_pred             Cc-chhhHHHHHHHHHHHHHHhhccc------HHHHHHHHHHhhccCCcch-hhHHHHHhhc-CCCcchhHHHHHHHHHH
Q 015488            1 ME-EGSILGGALVTFVAGLLSAFSPN------YISLLILRGLAGAGLGSGH-VFFSWFMEFV-PPSNRGKWMVVFSTFWT   71 (406)
Q Consensus         1 ~r-r~~~~~~~~~~~i~~~~~~~a~~------~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~-p~~~Rg~~~~~~~~~~~   71 (406)
                      || |+.++.+.....++.++..+.++      ...+.+.+++.+++.+... ...++..|.. ++++|++..++.+.+..
T Consensus        67 Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~  146 (437)
T TIGR00792        67 GKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGAT  146 (437)
T ss_pred             CCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHH
Confidence            45 45666787888888877776664      4567778888887766543 2344567877 57899999999888888


Q ss_pred             HHHHHHHHhhHHhc-------ccchhHHHHHHhhHHHHHHHH-HHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCC
Q 015488           72 FGSVSEAALAWIVM-------PILTWRWLLALSAIPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLP  143 (406)
Q Consensus        72 ~G~~l~~~l~~~~~-------~~~~Wr~~f~i~~ip~~~~~~-~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~  143 (406)
                      +|.++++.+...+.       +..+||+.+.+.++..++..+ ..+..||.++..     .                   
T Consensus       147 ~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~-----~-------------------  202 (437)
T TIGR00792       147 LGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEI-----P-------------------  202 (437)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCC-----C-------------------
Confidence            88877766544332       246899999988887766543 445566654200     0                   


Q ss_pred             CCCCcCCCCCCcccccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 015488          144 SGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSG  223 (406)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  223 (406)
                      +           ++   + ++.+.           +   +.++.+++++.......   ..+...+.++....+.+.+..
T Consensus       203 ~-----------~~---~-~~~~~-----------~---~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  250 (437)
T TIGR00792       203 K-----------NI---E-KKLSL-----------K---QIFKALFKNDQLLILCL---AYLFYNLAFNIKNGVQVYYFT  250 (437)
T ss_pred             c-----------cc---c-cCCCH-----------H---HHHHHHhCCHHHHHHHH---HHHHHHHHHHHHcchhheeEe
Confidence            0           00   0 00000           0   01222222222211111   111112222221111111110


Q ss_pred             cCCCCCcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHH
Q 015488          224 SQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSN-ILLTALLS  302 (406)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  302 (406)
                      .        .  .+.. ........+..+..+++.++.++++||+|||+.+..+..+..+....+....++ ........
T Consensus       251 ~--------~--~~~~-~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (437)
T TIGR00792       251 Y--------V--LGDP-ELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLII  319 (437)
T ss_pred             e--------e--cCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHH
Confidence            0        0  0001 111122233457778899999999999999998887766555443333322222 22222222


Q ss_pred             HHHHHhhhhhhhhhhhcccccC-------cchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhc
Q 015488          303 GARMFSMGTFIIANIFAPEIYP-------TSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC  357 (406)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~El~p-------~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~  357 (406)
                      ...+......+..+.+.+|..|       .+.++++.|+.+.+.++|+.+++.+.+.+.+..
T Consensus       320 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~  381 (437)
T TIGR00792       320 LAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII  381 (437)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            2222223345566777777754       566799999999999999999999988877543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.71  E-value=4e-14  Score=135.29  Aligned_cols=285  Identities=13%  Similarity=0.026  Sum_probs=163.1

Q ss_pred             HHhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhHHhcccchhHHHHHHh
Q 015488           19 LSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALS   97 (406)
Q Consensus        19 ~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~~~~~~Wr~~f~i~   97 (406)
                      ....+++++.+++.|.++|.+.+.. +....+..|+  +++|++..+......++|.++++.++..+.+..|||..|.+.
T Consensus        87 ~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~  164 (382)
T TIGR00902        87 FSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAIL  164 (382)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence            4456789999999999999877654 3444444554  477899999999999999999999999888888999999887


Q ss_pred             hHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCcccccccCCccccchhhhccccc
Q 015488           98 AIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTV  177 (406)
Q Consensus        98 ~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (406)
                      .+...+... .+.++|+++    +++.+                            + ++   +.++             
T Consensus       165 ~~~~~~~~~-~~~~~~~~~----~~~~~----------------------------~-~~---~~~~-------------  194 (382)
T TIGR00902       165 TAGLAFMLI-GFLIKPTIP----PKDAI----------------------------P-ED---ESQG-------------  194 (382)
T ss_pred             HHHHHHHHH-HHHcCCCCC----CCccc----------------------------c-cc---cccc-------------
Confidence            654333322 333444321    00000                            0 00   0000             


Q ss_pred             cccccchhhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCccchhhHHHHHHHHhhhhH
Q 015488          178 RKSGFSSFLML-FSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELP  256 (406)
Q Consensus       178 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (406)
                          .++.... .+|+.+.-.....+.. .....+++   +.+.+..+.           +..............+.+++
T Consensus       195 ----~~~~~~~l~~~~~~~~l~~~~l~~-~~~~~~~~---~~~~~l~~~-----------g~s~~~~g~l~~~~~~~~i~  255 (382)
T TIGR00902       195 ----DSAFIALLKNPMNLRFLAAVCLIQ-GAHAAYYG---FSAIYWQAA-----------GISASATGLLWGIGVLAEII  255 (382)
T ss_pred             ----chhHHHHHcChHHHHHHHHHHHHH-HHHHHHHH---HHHHHHHHC-----------CCCHhHHHHHHHHHHHHHHH
Confidence                0011112 2233322222111111 11112222   222121111           01111112223345577788


Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchhhHHHhHHH
Q 015488          257 GLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAY  336 (406)
Q Consensus       257 g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~  336 (406)
                      +....+.+.||+|+|+.+..+.+...+....+....+.+........-.+......+....+..+. |.+.|+++.++.+
T Consensus       256 ~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~  334 (382)
T TIGR00902       256 IFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYN  334 (382)
T ss_pred             HHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHH
Confidence            888999999999999998887777766555444333322222221111122222334445566677 9999999999976


Q ss_pred             HhH-hHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHH
Q 015488          337 AVG-RIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVV  376 (406)
Q Consensus       337 ~~~-~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~  376 (406)
                      ... .+|..++|.+.+.+.+..+. ..|.+.+++.+++.++
T Consensus       335 ~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       335 ALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            544 47888899999988877653 4566777777665444

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.71  E-value=5.8e-15  Score=142.93  Aligned_cols=134  Identities=12%  Similarity=0.083  Sum_probs=87.8

Q ss_pred             HHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchhh
Q 015488          250 TSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRS  329 (406)
Q Consensus       250 ~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~  329 (406)
                      ..+...++.++++++.||+|||+.+..+.++.++.........+.+......................+.+|.+|++.|+
T Consensus       271 ~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a  350 (420)
T PRK09528        271 QVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSA  350 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccee
Confidence            34566788999999999999999887766655554443333333322221111111111112233456778999999999


Q ss_pred             HHHhH-HHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccc
Q 015488          330 TGAGV-AYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFE  383 (406)
Q Consensus       330 ~a~g~-~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e  383 (406)
                      ++.+. .++.+.+|++++|.+.+.+.+..+....+.+.+++.++..++.++..++
T Consensus       351 ~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        351 TIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             eeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            98776 4556778999999999988887666667777777777766666655433

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.71  E-value=4e-17  Score=151.01  Aligned_cols=115  Identities=24%  Similarity=0.388  Sum_probs=100.2

Q ss_pred             cchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHh
Q 015488            2 EEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAAL   80 (406)
Q Consensus         2 rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l   80 (406)
                      |+..+..+..++.+++++++++..|+++.++|.+.|+|++.. +...+.+++.+|..+|+++.++++...++|..+|.+.
T Consensus        97 R~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vv  176 (493)
T KOG1330|consen   97 RKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVV  176 (493)
T ss_pred             cceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEe
Confidence            888999999999999999999999999999999999999875 5678899999999999999999999999999988877


Q ss_pred             hHHhcccch-hHHHHHHhhHHHHHH-HHHHHhccCCcc
Q 015488           81 AWIVMPILT-WRWLLALSAIPAFVL-LIFIVFMPESPR  116 (406)
Q Consensus        81 ~~~~~~~~~-Wr~~f~i~~ip~~~~-~~~~~~~pESp~  116 (406)
                      +..+.+..+ |||.|...++.+++. ++.+++.+|.+|
T Consensus       177 gs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r  214 (493)
T KOG1330|consen  177 GSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPER  214 (493)
T ss_pred             eeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence            776665444 999999999888776 445666777654

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.68  E-value=5e-14  Score=135.27  Aligned_cols=315  Identities=13%  Similarity=0.079  Sum_probs=165.8

Q ss_pred             CcchhhHHHHHHHHHHHHHH---hhc-----ccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLS---AFS-----PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWT   71 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~---~~a-----~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~   71 (406)
                      +||+.++.+.....++....   .+.     +....+.+.|++.|++.+.. +....+..|..+  ++++..+......+
T Consensus        66 grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~  143 (396)
T TIGR00882        66 GLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGC  143 (396)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcc
Confidence            68998887766665443321   112     22345677788888887764 334445555433  33445566666678


Q ss_pred             HHHHHHHHhhHHhcccchhHHHHHHhhHHHHHHHHHHHh-ccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCC
Q 015488           72 FGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVF-MPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSD  150 (406)
Q Consensus        72 ~G~~l~~~l~~~~~~~~~Wr~~f~i~~ip~~~~~~~~~~-~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~  150 (406)
                      +|..+++.++..+.+ .+||++|++.++..++..+..+. .||+|+.       ++..+           +         
T Consensus       144 ~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-----------~---------  195 (396)
T TIGR00882       144 VGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKAPSS-------ATVAN-----------A---------  195 (396)
T ss_pred             cHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCCchh-------hhhhc-----------c---------
Confidence            888888888776644 59999999988776665443333 4544321       00000           0         


Q ss_pred             CCCCcccccccCCccccchhhhccccccccccchhhhcc-ChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhccCCCC
Q 015488          151 GTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNS-FVYYGIVLLASELSGSQSKC  228 (406)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~  228 (406)
                          .++  +++++                ..++..+++ +|+.+.-............ ...+...+..+....     
T Consensus       196 ----~~~--~~~~~----------------~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~-----  248 (396)
T TIGR00882       196 ----LGA--NASAF----------------SLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFAT-----  248 (396)
T ss_pred             ----ccc--ccCCC----------------CHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----
Confidence                000  00000                000111222 2322221111111111111 111111111111100     


Q ss_pred             CcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 015488          229 SSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFS  308 (406)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (406)
                             .............+..+...++....+.+.||+|||+.+..+..+.++.........+...............
T Consensus       249 -------~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~  321 (396)
T TIGR00882       249 -------PQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEV  321 (396)
T ss_pred             -------cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence                   0000011112223344566778889999999999999888776655554333232233222221111111111


Q ss_pred             hhhhhhhhhhcccccCcchhhHHHhH-HHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHh
Q 015488          309 MGTFIIANIFAPEIYPTSMRSTGAGV-AYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILL  379 (406)
Q Consensus       309 ~~~~~~~~~~~~El~p~~~R~~a~g~-~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  379 (406)
                      .........+..|..|++.|+++.+. .+....+|+.++|.+.+++.+..+....|.+.+++.++.+++..+
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       322 PFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             HHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            11122344566788999999998877 456778899999999999888777667788888887777766554

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.68  E-value=1.7e-13  Score=130.89  Aligned_cols=282  Identities=9%  Similarity=-0.044  Sum_probs=151.5

Q ss_pred             HhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhHHhcccchhHHHHHHhh
Q 015488           20 SAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSA   98 (406)
Q Consensus        20 ~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~~~~~~Wr~~f~i~~   98 (406)
                      ...+++++.+++.|++.|++.+.. +....+..++  +++|++..+.......+|..++|.++..+.+..|||..|++.+
T Consensus        88 ~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~  165 (382)
T PRK11128         88 WFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILT  165 (382)
T ss_pred             HHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Confidence            345688999999999999876654 3333344455  3567777788888889999999999999888889999998877


Q ss_pred             HHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCcccccccCCccccchhhhcccccc
Q 015488           99 IPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVR  178 (406)
Q Consensus        99 ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (406)
                      +..++..+..+..||.++    +++.+                              ++   ..+.              
T Consensus       166 ~~~~~~~~~~~~~~~~~~----~~~~~------------------------------~~---~~~~--------------  194 (382)
T PRK11128        166 AGVASMLLGQLLRPTIMP----QGESR------------------------------QQ---ESAG--------------  194 (382)
T ss_pred             HHHHHHHHHHHccCCCCC----ccccc------------------------------cc---cccc--------------
Confidence            654444333334454321    00000                              00   0000              


Q ss_pred             ccccchhhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCccchhhHHHHHHHHhhhhHH
Q 015488          179 KSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPG  257 (406)
Q Consensus       179 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  257 (406)
                      +   ++++..+ +|+.+.-.....+....    +.+...+.+.+..+.+           ..............+..+++
T Consensus       195 ~---~~~~~i~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~g-----------~s~~~~g~~~~~~~~~~~~~  256 (382)
T PRK11128        195 W---PAWKALLKEPTVWRFLLCVSLLQGS----HAAYYGFSAIYWQAAG-----------YSASTIGYLWSLGVVAEVLI  256 (382)
T ss_pred             c---chHHHHHcChhHHHHHHHHHHHHHH----hHhHHHHHHHHHHHCC-----------CCHhHHHHHHHHHHHHHHHH
Confidence            0   0111222 23333222212222111    1111111111111100           01111112222444667778


Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchhhHHHhHHHH
Q 015488          258 LLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYA  337 (406)
Q Consensus       258 ~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~  337 (406)
                      ....+++.||+|+|+.+..+.+...+....+....+.+..........+......+....+..+. |.+.+++..++.+.
T Consensus       257 ~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  335 (382)
T PRK11128        257 FAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSA  335 (382)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHH
Confidence            88899999999999998877666555444333333222222211111111111223334455565 45556888888775


Q ss_pred             hHh-HHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHH
Q 015488          338 VGR-IGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSV  374 (406)
Q Consensus       338 ~~~-~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~  374 (406)
                      .+. .|..++|.+.+.+.+..+. ..++..+++.+++.
T Consensus       336 ~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~  372 (382)
T PRK11128        336 LAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPAL  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence            543 5667889999988887654 34555555555443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.65  E-value=1.8e-14  Score=140.72  Aligned_cols=359  Identities=16%  Similarity=0.127  Sum_probs=198.5

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHH-HHhhccCCcchhh-HHHHHhhcCCCcchhHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILR-GLAGAGLGSGHVF-FSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEA   78 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R-~l~G~g~g~~~~~-~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~   78 (406)
                      |.|.+.+.+.++..++.+++.|+++++.+++.- ++.|+|.|..+.. .+.+..+ -+|+|+.+.++...+.++|.++-|
T Consensus       109 g~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~Y-F~kkR~lA~Gia~~GsG~G~~~~~  187 (509)
T KOG2504|consen  109 GCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTY-FEKKRALATGIAVSGTGVGTVVFP  187 (509)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhH-hHHHHHHHHhhhhccCCcceeeHH
Confidence            568999999999999999999999998776654 5677888876433 3334444 467899999999999999999999


Q ss_pred             HhhHHhcccchhHHHHHHhhHHHHHHHHH-HHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCccc
Q 015488           79 ALAWIVMPILTWRWLLALSAIPAFVLLIF-IVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDE  157 (406)
Q Consensus        79 ~l~~~~~~~~~Wr~~f~i~~ip~~~~~~~-~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (406)
                      .+.-.+.+..|||+.+++.+...+-.++. ...-|.+|+-.   .+.++..+.       ...+.+..+...+.+....+
T Consensus       188 ~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~---~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~  257 (509)
T KOG2504|consen  188 PLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKK---PNEEKDLRN-------SAASVESTPKPVELRISERD  257 (509)
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCC---chhhhhhcc-------ccccccccccccccccccCC
Confidence            98888888899999999887776554443 33344444321   111111110       00000000000000000000


Q ss_pred             ccccCCccccchhhhcccc-ccccccchhhhccChhhHH-HH-HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccccc
Q 015488          158 EFSTSEETPLLSSARKRTT-VRKSGFSSFLMLFSPRFFK-TT-ILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILL  234 (406)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  234 (406)
                      ..............++.++ .+..+.+....+++.+..+ +. +...+......+.++...++.+....+.         
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~---------  328 (509)
T KOG2504|consen  258 SGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSL---------  328 (509)
T ss_pred             CCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------
Confidence            0000000000000000000 0000000111111122221 11 2222222334445555555555443211         


Q ss_pred             ccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhch--HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhh
Q 015488          235 SENVQDASVYINVFITSFAELPGLLTAALLVDRVGR--KLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTF  312 (406)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gr--R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (406)
                        ...+.......-+.+...++|-++.|++.|+...  +.....+.+++++..+......+.......+....++.....
T Consensus       329 --g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~  406 (509)
T KOG2504|consen  329 --GLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFS  406 (509)
T ss_pred             --CCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence              1122222333445567788999999999999874  344455555555544332222222222222222222222233


Q ss_pred             hhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhh-HHHHHHHHHHHHHHHHHHhcc
Q 015488          313 IIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQT-AAILLLEALIVLSVVVILLIP  381 (406)
Q Consensus       313 ~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~-~~~~~~~~~~~i~~~~~~~~~  381 (406)
                      +....+..|+.+.+.-+.+.|+...+..++..++|.+.+.+.+..+.+ ..|+..+++.++++++.++.+
T Consensus       407 ~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  407 SLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            445578899999999999999999999999999998988777776643 456666777777776665554

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.63  E-value=6.4e-13  Score=130.29  Aligned_cols=108  Identities=16%  Similarity=0.103  Sum_probs=91.7

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCc---chhHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSN---RGKWMVVFSTFWTFGSVS   76 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~---Rg~~~~~~~~~~~~G~~l   76 (406)
                      |||+.+.++.++..++.++.++++++..+.+.|++.|+|.|.. +...++.+|++|+++   |++..++++.+.++|.++
T Consensus        77 G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~i  156 (475)
T TIGR00924        77 GTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFI  156 (475)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999999875 455667889998765   888899999999999999


Q ss_pred             HHHhhHHhcccchhHHHHHHhhHHHHHHHHHH
Q 015488           77 EAALAWIVMPILTWRWLLALSAIPAFVLLIFI  108 (406)
Q Consensus        77 ~~~l~~~~~~~~~Wr~~f~i~~ip~~~~~~~~  108 (406)
                      ++.+...+.+..+||+.|.+.++..++..+.+
T Consensus       157 g~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~  188 (475)
T TIGR00924       157 SPLLAGVIAENYGYHVGFNLAAVGMVIGLLTF  188 (475)
T ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence            99999888887899999998775444443333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PTZ00207 hypothetical protein; Provisional

Probab=99.62  E-value=3.4e-13  Score=133.03  Aligned_cols=131  Identities=15%  Similarity=0.118  Sum_probs=98.2

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhc------ccHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFS------PNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFG   73 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a------~~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G   73 (406)
                      |||+.+.++.+++.++.++++++      ++++.+++.|++.|+|.+... .....+.+++| ++||++.++...+..+|
T Consensus        89 G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLG  167 (591)
T PTZ00207         89 GPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLG  167 (591)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHH
Confidence            68999999999999999999987      689999999999999977643 34455788986 78999999999999999


Q ss_pred             HHHHHHhhHHhcccchhHHHHHHhhHHHHHH-HH--HHHhccCCcchhhccCChhhHHHHHHH
Q 015488           74 SVSEAALAWIVMPILTWRWLLALSAIPAFVL-LI--FIVFMPESPRYLCTKGRITDAHNILDK  133 (406)
Q Consensus        74 ~~l~~~l~~~~~~~~~Wr~~f~i~~ip~~~~-~~--~~~~~pESp~~l~~~~~~~~a~~~l~~  133 (406)
                      ..+.+.+...+.. .+|+..|++.++..++. ++  .....||+|+|...+++.+++++..++
T Consensus       168 saI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~  229 (591)
T PTZ00207        168 SAILGSIQLAFFS-DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRL  229 (591)
T ss_pred             HHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHh
Confidence            9865544443322 46888777666554443 32  233468888887677666666666444

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.62  E-value=1.3e-12  Score=128.40  Aligned_cols=315  Identities=15%  Similarity=0.076  Sum_probs=189.4

Q ss_pred             CcchhhHHHHHHHHHHHHHHhh-----cccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAF-----SPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGS   74 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~-----a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~   74 (406)
                      .||+.++.+.++..+..+..++     ..+.+.+++.-++.|++.+.. +.-.+.+-|..|+++...+.++.+...++..
T Consensus        73 drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar  152 (524)
T PF05977_consen   73 DRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIAR  152 (524)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHH
Confidence            3899999988887665543332     247888999999999987765 4556678899999999999999999999999


Q ss_pred             HHHHHhhHHhcccchhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCC
Q 015488           75 VSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTND  154 (406)
Q Consensus        75 ~l~~~l~~~~~~~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~  154 (406)
                      ++||.+++.+....|=.+.|.+.++..++.......++..++    +++. +.++..+.                     
T Consensus       153 ~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~----~~~~-~~e~~~~~---------------------  206 (524)
T PF05977_consen  153 IIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP----PSSL-PRERFFSA---------------------  206 (524)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc----cccc-chhhhhhh---------------------
Confidence            999999998877778888999888765554443333332111    0000 00000000                     


Q ss_pred             cccccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccccc
Q 015488          155 LDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILL  234 (406)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  234 (406)
                                             -++   .++..+..+..+..+.....+......++.+   .|.+..+          
T Consensus       207 -----------------------l~~---G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aL---lPl~a~~----------  247 (524)
T PF05977_consen  207 -----------------------LRE---GLRYVRSSPPLRSVLLRSFLFNLFASAVWAL---LPLFARD----------  247 (524)
T ss_pred             -----------------------HHH---HHHHHhcchHHHHHHHHHHHHHHhhhHHHHh---hhHHHHH----------
Confidence                                   000   1111222222222222111111111112221   2222110          


Q ss_pred             ccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhh
Q 015488          235 SENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFII  314 (406)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (406)
                      ..+.............++++++|.++.+.+.+|.++++++..+.+..++.++.+....+.+.....++...++.....+.
T Consensus       248 ~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~  327 (524)
T PF05977_consen  248 VLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSS  327 (524)
T ss_pred             HhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            00111122222334455777888888888888888888777776666665555554444443333333333333344455


Q ss_pred             hhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhc
Q 015488          315 ANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI  380 (406)
Q Consensus       315 ~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  380 (406)
                      ..+...+..|.++|++..++..++...+..++..+.+.+.+..+....+.+.++..+++.++....
T Consensus       328 ~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~  393 (524)
T PF05977_consen  328 LNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRF  393 (524)
T ss_pred             HHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh
Confidence            677788999999999999999998888778888888877776665555555555555555555443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.62  E-value=4.8e-13  Score=131.94  Aligned_cols=103  Identities=16%  Similarity=0.072  Sum_probs=84.3

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcc-cHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCc--chhHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSP-NYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSN--RGKWMVVFSTFWTFGSVS   76 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~-~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~--Rg~~~~~~~~~~~~G~~l   76 (406)
                      |||+.++.+.++..++..++++++ +...+.+.|++.|+|.|.. +....++.|++|+++  |+...++++.+.++|..+
T Consensus        86 G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~  165 (500)
T PRK09584         86 GTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFF  165 (500)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHH
Confidence            689999999999999988888874 5667888999999998865 344567889998754  445678888999999999


Q ss_pred             HHHhhHHhcccchhHHHHHHhhHHHHH
Q 015488           77 EAALAWIVMPILTWRWLLALSAIPAFV  103 (406)
Q Consensus        77 ~~~l~~~~~~~~~Wr~~f~i~~ip~~~  103 (406)
                      ++.+...+.+..|||+.|.+.++..++
T Consensus       166 gp~i~g~l~~~~g~~~~F~i~~i~~~i  192 (500)
T PRK09584        166 SMLATPWLAAKYGWSVAFALSVVGMLI  192 (500)
T ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence            999999888888999999998764444

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.62  E-value=1e-12  Score=129.01  Aligned_cols=100  Identities=18%  Similarity=0.165  Sum_probs=86.2

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHH-HHHHHHHhhccCCcc-hhhHHHHHhhcCCCc--chhHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYIS-LLILRGLAGAGLGSG-HVFFSWFMEFVPPSN--RGKWMVVFSTFWTFGSVS   76 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~-l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~--Rg~~~~~~~~~~~~G~~l   76 (406)
                      |||+.++++.+++.++.++++++++... ++++|.++|+|.|.. +...+.+.|.+|+++  |++..+++..++++|..+
T Consensus        79 G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~  158 (489)
T PRK10207         79 GTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLI  158 (489)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHH
Confidence            6999999999999999999999887554 558999999999876 455677899999874  577889999999999999


Q ss_pred             HHHhhHHhcccchhHHHHHHhhHH
Q 015488           77 EAALAWIVMPILTWRWLLALSAIP  100 (406)
Q Consensus        77 ~~~l~~~~~~~~~Wr~~f~i~~ip  100 (406)
                      ++.++..+.+..|||+.|++..+.
T Consensus       159 g~~l~g~l~~~~gw~~~F~i~~i~  182 (489)
T PRK10207        159 SLSLAPVIADKFGYSVTYNLCGAG  182 (489)
T ss_pred             HHHHHHHHHHhhChHHHHHHHHHH
Confidence            999999988888999999987543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.60  E-value=2.4e-12  Score=123.34  Aligned_cols=259  Identities=13%  Similarity=0.030  Sum_probs=140.1

Q ss_pred             hHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhHHhcccchhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChh
Q 015488           46 FFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRIT  125 (406)
Q Consensus        46 ~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~~~~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~  125 (406)
                      ...+..|..++++++...+....+..+|.++++.....+.+..+||..|++.++..++..+..++++|+++-   +.+.+
T Consensus       118 ~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~~  194 (390)
T TIGR02718       118 TDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVA---SPEAP  194 (390)
T ss_pred             HHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcC---ccccc
Confidence            344567888888888888888888899999999877777778899999999887766655444555443210   00000


Q ss_pred             hHHHHHHHHHHHcCCCCCCCCCcCCCCCCcccccccCCccccchhhhccccccccccchhhhccC-hhhHHHHHHHHHHH
Q 015488          126 DAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS-PRFFKTTILLWVLY  204 (406)
Q Consensus       126 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  204 (406)
                                                         +.+               +   +.+.++++ |+.+. .....+.+
T Consensus       195 -----------------------------------~~~---------------~---~~~~~~l~~~~~~~-~~~~~~l~  220 (390)
T TIGR02718       195 -----------------------------------LAR---------------R---ASLFRFFRRPLAWS-LLALALLS  220 (390)
T ss_pred             -----------------------------------hhh---------------H---HHHHHHHcCcCHHH-HHHHHHHH
Confidence                                               000               0   01111222 22222 22222222


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCCCCcccccccCccchhhHHHHHHH-HhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 015488          205 FGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFIT-SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCI  283 (406)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~  283 (406)
                      .......++..  .+.+.+ .           +............. ....+++.++++++.||+|+|+.+..+....++
T Consensus       221 ~~~~~~~~~~~--~~~l~~-~-----------G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~  286 (390)
T TIGR02718       221 AMTAVSGFGLS--KLYLVD-A-----------GWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGS  286 (390)
T ss_pred             HHHHHHHHHHh--hHHHHh-c-----------CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            22122222211  111111 0           01111111111111 234567788999999999999988776554422


Q ss_pred             HHHHHHh-h-----hhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCc-chhhHHHhHHHHhHhHHHHHHHHHHHHHhhh
Q 015488          284 FLLPLVT-L-----QSNILLTALLSGARMFSMGTFIIANIFAPEIYPT-SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS  356 (406)
Q Consensus       284 ~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~-~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~  356 (406)
                      ....... .     ..............+.....++..+....+..++ +.++++.++.++...+|+.++|.+.+.+.+.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~  366 (390)
T TIGR02718       287 LALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR  366 (390)
T ss_pred             HHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2221111 1     0111111111111111122234444555555655 8999999999999999999999999988876


Q ss_pred             chhhHHHHHHHHHHHHHHH
Q 015488          357 CHQTAAILLLEALIVLSVV  375 (406)
Q Consensus       357 ~~~~~~~~~~~~~~~i~~~  375 (406)
                      .+....|.+.+++.+++.+
T Consensus       367 ~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       367 FGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HccHHHHHHHHHHHHHHHH
Confidence            6554556665555555543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.60  E-value=7.9e-12  Score=121.51  Aligned_cols=323  Identities=17%  Similarity=0.223  Sum_probs=185.9

Q ss_pred             cchhhHHHHHHHHHHHHHHhhc-cc-HHHHHHHHHHhhccCCcchhh-HHHHHhhcCCCcc-------------------
Q 015488            2 EEGSILGGALVTFVAGLLSAFS-PN-YISLLILRGLAGAGLGSGHVF-FSWFMEFVPPSNR-------------------   59 (406)
Q Consensus         2 rr~~~~~~~~~~~i~~~~~~~a-~~-~~~l~~~R~l~G~g~g~~~~~-~~~~~E~~p~~~R-------------------   59 (406)
                      ||+.+.+..++..+++.+..+. ++ +....+.-++.-++.+...+. .+++-|+++++++                   
T Consensus       100 Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~  179 (477)
T PF11700_consen  100 RKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYE  179 (477)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhh
Confidence            6666666777777777766663 33 333333333333555554443 4578899999988                   


Q ss_pred             -------hhHHHHHHHHHHHHHHHHHHhhHHhc-c-------cchhHHHHHHhhHHHHH-HHHHHHhccCCcchhhccCC
Q 015488           60 -------GKWMVVFSTFWTFGSVSEAALAWIVM-P-------ILTWRWLLALSAIPAFV-LLIFIVFMPESPRYLCTKGR  123 (406)
Q Consensus        60 -------g~~~~~~~~~~~~G~~l~~~l~~~~~-~-------~~~Wr~~f~i~~ip~~~-~~~~~~~~pESp~~l~~~~~  123 (406)
                             ++..+.-.....+|.++.-.+...+. .       ..+-|..+.+.++.-++ .++..+++||.|+--..+..
T Consensus       180 ~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~  259 (477)
T PF11700_consen  180 AVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSG  259 (477)
T ss_pred             hHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence                   88887766666677766655554431 1       22358888888876544 46677788888762000000


Q ss_pred             hhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCcccccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHH
Q 015488          124 ITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVL  203 (406)
Q Consensus       124 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (406)
                      .+-.....+++.+                                               .++...+-+.....++.+++
T Consensus       260 ~~~~~~g~~~l~~-----------------------------------------------t~k~~~~~~~~~~fLia~~l  292 (477)
T PF11700_consen  260 SSYLRFGFKRLWR-----------------------------------------------TFKEIRKLRQLFLFLIAYFL  292 (477)
T ss_pred             hhHHHHHHHHHHH-----------------------------------------------HHHHHHhChHHHHHHHHHHH
Confidence            0001111111111                                               01111100111112222232


Q ss_pred             HH--HHHHHHHHHHHHHHhhhccCCCCCcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchH--HHHHHHHH
Q 015488          204 YF--GNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRK--LSMTIMFI  279 (406)
Q Consensus       204 ~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR--~~~~~~~~  279 (406)
                      +.  .+.+...+..+....+.               ....+.....++..+.+++|+++.+++.||+|.|  +++..+.+
T Consensus       293 ~~dg~~ti~~~~~i~a~~~lg---------------~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~  357 (477)
T PF11700_consen  293 YSDGVNTIISFAGIYATEVLG---------------MSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLI  357 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHhcC---------------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence            21  12222222222221221               1223344556677788999999999999999999  67666554


Q ss_pred             HHHHH-HHHHH-h------hhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHH
Q 015488          280 FVCIF-LLPLV-T------LQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAV  351 (406)
Q Consensus       280 ~~~~~-~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~  351 (406)
                      ...++ ...+. .      ..+.+....+......+..+..+..-++.+|+.|+...+.-+|+-...++..++++|++++
T Consensus       358 ~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g  437 (477)
T PF11700_consen  358 LWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFG  437 (477)
T ss_pred             HHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44332 22222 0      1223333333333334445567778889999999999999999999999999999999999


Q ss_pred             HHhhhch-hhHHHHHHHHHHHHHHHHHHhcccccCCc
Q 015488          352 GLVTSCH-QTAAILLLEALIVLSVVVILLIPFETKGK  387 (406)
Q Consensus       352 ~l~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~et~~~  387 (406)
                      .+.+.++ ....+....++.+++.++. ...+++|++
T Consensus       438 ~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g~  473 (477)
T PF11700_consen  438 LITDATGSQRYGFLFLLVLFLIGLILL-FFVDVEKGR  473 (477)
T ss_pred             HHHHHhCCchhHHHHHHHHHHHHHHHH-hhccchhhh
Confidence            8887766 3455666667777776665 444566665

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.59  E-value=1.7e-12  Score=127.39  Aligned_cols=106  Identities=20%  Similarity=0.240  Sum_probs=85.2

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcchhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHh
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAAL   80 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l   80 (406)
                      |||..++++.++..++.+.++.++|...++++-.+.|+|.|........++|..|.|.|+....+.....-.....++.+
T Consensus       106 GRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~i  185 (599)
T PF06609_consen  106 GRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLI  185 (599)
T ss_pred             cchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHH
Confidence            79999999999999999999999999999999999999977665444457899999999877766655554444456666


Q ss_pred             hHHhcccchhHHHHHHhhHHHHHHHH
Q 015488           81 AWIVMPILTWRWLLALSAIPAFVLLI  106 (406)
Q Consensus        81 ~~~~~~~~~Wr~~f~i~~ip~~~~~~  106 (406)
                      +..+....+|||.|++..+...+.++
T Consensus       186 a~~~~~~~~WRw~~~~~~i~~~i~~v  211 (599)
T PF06609_consen  186 AQLFAAHSGWRWIFYIFIIWSGIALV  211 (599)
T ss_pred             HHHhccCCCcchHHHHHHHHHHHHHH
Confidence            66666567999999998876555433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR01272 gluP glucose/galactose transporter

Probab=99.58  E-value=3e-12  Score=118.38  Aligned_cols=274  Identities=13%  Similarity=0.102  Sum_probs=155.5

Q ss_pred             hcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhHHhcc--------------
Q 015488           22 FSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMP--------------   86 (406)
Q Consensus        22 ~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~~~--------------   86 (406)
                      ...+|..+.+.=|+.|.|.+.. ....+|+.+..|++++.+.+++.+.++.+|.+++|.++..+..              
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~   85 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN   85 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence            4578999999999999999875 5677899999999999999999999999999999999886542              


Q ss_pred             --cchhHHHHHHhhHHHHHHHHHHH--hccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCcccccccC
Q 015488           87 --ILTWRWLLALSAIPAFVLLIFIV--FMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTS  162 (406)
Q Consensus        87 --~~~Wr~~f~i~~ip~~~~~~~~~--~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (406)
                        ..+||+++++.+...++..+.+.  .+||.+.      +.++                           +..++ +..
T Consensus        86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~---------------------------~~~~~-~~~  131 (310)
T TIGR01272        86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVA---------------------------RVSSG-DTT  131 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------cccc---------------------------ccccc-ccc
Confidence              14799999966554444333333  3455311      0000                           00000 000


Q ss_pred             CccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCccchh
Q 015488          163 EETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDAS  242 (406)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  242 (406)
                      +              .+    .  .+..|+.+. -.+..+.+.+.-..   ...|.+.+..+...      ...+.....
T Consensus       132 ~--------------~~----~--~~~~~~~~l-~~~~~f~yvg~e~~---~~~w~~~yl~~~~~------~g~s~~~a~  181 (310)
T TIGR01272       132 Q--------------KT----S--AFQFTHLVL-GALGIFVYVGAEVS---AGSFLVNFLSDPHA------LGLPEDQAA  181 (310)
T ss_pred             c--------------hh----h--HHhhHHHHH-HHHHHHHHHHHHHH---HHHHHHHHHHhccc------CCCCHHHHH
Confidence            0              00    0  001111111 11112222221111   11222222110000      000111111


Q ss_pred             hHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccc
Q 015488          243 VYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEI  322 (406)
Q Consensus       243 ~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El  322 (406)
                      .  .........++|.++++++.||+|+|+.+..+..++.+............... ......++....++.......+.
T Consensus       182 ~--~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~~-~~~l~g~~~s~i~P~~~s~a~~~  258 (310)
T TIGR01272       182 H--FTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAMW-FVLALGLFNSIMFPTIFSLALNA  258 (310)
T ss_pred             H--HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence            1  22333456778999999999999999887776555554443322222221122 22233344556677777788888


Q ss_pred             cCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHH
Q 015488          323 YPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAIL  364 (406)
Q Consensus       323 ~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~  364 (406)
                      +|.+ .+++.++. ..+.+|+.+.|.+.+.+.|..+...++.
T Consensus       259 ~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~  298 (310)
T TIGR01272       259 LGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFA  298 (310)
T ss_pred             hhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence            8865 34566664 6788999999999998877666544544

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.53  E-value=5.7e-13  Score=126.00  Aligned_cols=114  Identities=14%  Similarity=0.190  Sum_probs=96.5

Q ss_pred             cchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcchhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhh
Q 015488            2 EEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALA   81 (406)
Q Consensus         2 rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~   81 (406)
                      =|+.+..+.+.+++.+++.++++++..|.+.|++.|++.|+..+...++..|+|+++|+++.++...+..+|.+++++++
T Consensus        91 ~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~  170 (511)
T TIGR00806        91 YKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLG  170 (511)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            37889999999999999999999999999999999999998876667899999999999999999999999999999998


Q ss_pred             HHhcccchhHHHHHHh---hHHHHHHHHHHHhccCCcc
Q 015488           82 WIVMPILTWRWLLALS---AIPAFVLLIFIVFMPESPR  116 (406)
Q Consensus        82 ~~~~~~~~Wr~~f~i~---~ip~~~~~~~~~~~pESp~  116 (406)
                      .. ....|||+.+-+.   .....+.++.-+++|-.++
T Consensus       171 ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~  207 (511)
T TIGR00806       171 QL-LVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKR  207 (511)
T ss_pred             HH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence            88 4467899865554   3334445667788884333

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.53  E-value=1.2e-12  Score=118.45  Aligned_cols=86  Identities=19%  Similarity=0.162  Sum_probs=79.2

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcchhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHh
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAAL   80 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l   80 (406)
                      |||.++.++++..++.-.+-+++.|+..+.+.|++.|+.-|-..+..++++|+.++++|++.++..++++++|.++||.+
T Consensus        96 GRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmI  175 (451)
T KOG2615|consen   96 GRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMI  175 (451)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchh
Confidence            79999999999999999999999999777788999999999877888899999999999999999999999999999999


Q ss_pred             hHHhcc
Q 015488           81 AWIVMP   86 (406)
Q Consensus        81 ~~~~~~   86 (406)
                      ++.+..
T Consensus       176 Ggyla~  181 (451)
T KOG2615|consen  176 GGYLAQ  181 (451)
T ss_pred             hhHHHh
Confidence            877643

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.49  E-value=1e-12  Score=132.66  Aligned_cols=114  Identities=17%  Similarity=0.232  Sum_probs=94.1

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcc---------------------------------------------------cHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSP---------------------------------------------------NYISL   29 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~---------------------------------------------------~~~~l   29 (406)
                      +||+.+.++.+++.+++++.++.+                                                   .+..+
T Consensus        96 ~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (633)
T TIGR00805        96 HRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLF  175 (633)
T ss_pred             CcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhh
Confidence            589999999999999999887763                                                   25678


Q ss_pred             HHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhHHhcccc--------------------
Q 015488           30 LILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPIL--------------------   88 (406)
Q Consensus        30 ~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~~~~~--------------------   88 (406)
                      +++|+++|+|.+... ...+++.|++|+++|++..++++....+|.+++++++..+.+.+                    
T Consensus       176 ~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprW  255 (633)
T TIGR00805       176 LVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRW  255 (633)
T ss_pred             HHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccH
Confidence            899999999998864 56778999999999999999999999999999998887654321                    


Q ss_pred             --hhHHHHHHhhHHHHHHHHHHHhccCC
Q 015488           89 --TWRWLLALSAIPAFVLLIFIVFMPES  114 (406)
Q Consensus        89 --~Wr~~f~i~~ip~~~~~~~~~~~pES  114 (406)
                        +||..|++.++..++..+..+++||.
T Consensus       256 iGaWwl~Fli~g~l~~l~~v~l~~~p~~  283 (633)
T TIGR00805       256 IGAWWIGFLICGGVALLTSIPFFFFPKA  283 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence              38888988888877766666677765

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.44  E-value=1.7e-10  Score=105.93  Aligned_cols=302  Identities=16%  Similarity=0.184  Sum_probs=180.5

Q ss_pred             CcchhhHHHHHHHHHHHHHHh---hcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSA---FSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVS   76 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~---~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l   76 (406)
                      ++|+.++.+..+++++..+-.   -..+|..++++=|+.|.|.|.- ....+|++-..|++.-.+.+.+.+.+.++|.++
T Consensus        76 gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~  155 (422)
T COG0738          76 GYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAIL  155 (422)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHH
Confidence            578999999999999998774   5678999999999999999975 456778888888888888899999999999999


Q ss_pred             HHHhhHHhcc-------------------cchhHHHHHHhhHHHHHHHHHHHh--ccCCcchhhccCChhhHHHHHHHHH
Q 015488           77 EAALAWIVMP-------------------ILTWRWLLALSAIPAFVLLIFIVF--MPESPRYLCTKGRITDAHNILDKIA  135 (406)
Q Consensus        77 ~~~l~~~~~~-------------------~~~Wr~~f~i~~ip~~~~~~~~~~--~pESp~~l~~~~~~~~a~~~l~~~~  135 (406)
                      +|.+...+..                   ...||+++...+...+++.+....  +||-+.                   
T Consensus       156 gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~-------------------  216 (422)
T COG0738         156 GPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV-------------------  216 (422)
T ss_pred             HHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc-------------------
Confidence            9998765432                   124777777665554444333322  122110                   


Q ss_pred             HHcCCCCCCCCCcCCCCCCcccccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHH
Q 015488          136 QFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIV  215 (406)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (406)
                               .         .+++   .+          +    + . ....++++.++++...+..+.+.+.-...+...
T Consensus       217 ---------~---------~~~~---~~----------~----~-~-~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl  259 (422)
T COG0738         217 ---------A---------APSL---GA----------S----G-S-AGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFL  259 (422)
T ss_pred             ---------c---------cccc---cc----------c----c-c-chHHHHHhChHHHHHHHHHHHHHhHHHHHHHHH
Confidence                     0         0000   00          0    0 0 012234444444444444555555544443332


Q ss_pred             HHHHhhhccCCCCCcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhH
Q 015488          216 LLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNI  295 (406)
Q Consensus       216 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~  295 (406)
                      ..   +..+.        ...+.++...+...+.  .+.++|-.++.++..|+...+.+....+...+.+.......+ .
T Consensus       260 ~~---y~~~~--------~g~~~~~aa~~~s~~~--~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g-~  325 (422)
T COG0738         260 VS---YLEEL--------LGLNEQQAAYYLSFFW--VGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGG-V  325 (422)
T ss_pred             HH---HHHhc--------CCccHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcC-h
Confidence            21   11110        0011222222222222  455778888889999998888887765554444443333333 3


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHH
Q 015488          296 LLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSV  374 (406)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~  374 (406)
                      .....+....++....++..+....+-.|.+. ..+ |.....+-+||.+.|.+.+.+.|..+....+......|.+..
T Consensus       326 v~~~~l~~ig~F~simfPTIfslal~~l~~~t-s~~-s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV  402 (422)
T COG0738         326 VALYALFLIGLFNSIMFPTIFSLALKNLGEHT-SVG-SGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV  402 (422)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHhccCccc-ccc-ceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            33334445556667788999999999999433 333 333333447888899999988777665444443444444443

>PRK09669 putative symporter YagG; Provisional

Probab=99.43  E-value=1.2e-10  Score=113.69  Aligned_cols=106  Identities=12%  Similarity=0.013  Sum_probs=66.8

Q ss_pred             HhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh-h-hhhHHHHHHHHHHHHHhhhhhhhhhhhcccccC----
Q 015488          251 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT-L-QSNILLTALLSGARMFSMGTFIIANIFAPEIYP----  324 (406)
Q Consensus       251 ~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p----  324 (406)
                      .+..+++..+.+++.||+|+|+.+..+.....+....+.. . .+............+......+..+...+|..+    
T Consensus       274 ~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~  353 (444)
T PRK09669        274 MIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEK  353 (444)
T ss_pred             HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            3556678888899999999999887765544432222222 1 222222222222223333445667888888875    


Q ss_pred             ---cchhhHHHhHHHHhHhHHHHHHHHHHHHHhhh
Q 015488          325 ---TSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS  356 (406)
Q Consensus       325 ---~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~  356 (406)
                         .+..+...|+.+.+.++|..++|.+.+.+++.
T Consensus       354 ~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~  388 (444)
T PRK09669        354 RSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAW  388 (444)
T ss_pred             hcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               23346677888888899999999888876654

>TIGR00788 fbt folate/biopterin transporter

Probab=99.43  E-value=9.9e-12  Score=121.63  Aligned_cols=305  Identities=12%  Similarity=0.009  Sum_probs=155.6

Q ss_pred             cchhhHHHHHHHH-HHHHHHhhcccHHHHH-HHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHH---HHHHHHH
Q 015488            2 EEGSILGGALVTF-VAGLLSAFSPNYISLL-ILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFST---FWTFGSV   75 (406)
Q Consensus         2 rr~~~~~~~~~~~-i~~~~~~~a~~~~~l~-~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~---~~~~G~~   75 (406)
                      ||.-++++.++.. ++....+..++...+. +.+++.+++.+.. .+.-.++.|..+ ++++...+....   ...+|.+
T Consensus        94 Rr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~  172 (468)
T TIGR00788        94 KRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGL  172 (468)
T ss_pred             chHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHH
Confidence            3444455554442 3323333445544444 4888888887664 345567889988 555443333333   3458999


Q ss_pred             HHHHhhHHhcccchhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCc
Q 015488           76 SEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDL  155 (406)
Q Consensus        76 l~~~l~~~~~~~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~  155 (406)
                      +++.+++.+.+..+||..|++.+...++..+..+++||++.....+.+.++..                          .
T Consensus       173 vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~--------------------------~  226 (468)
T TIGR00788       173 ISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEM--------------------------N  226 (468)
T ss_pred             HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchh--------------------------h
Confidence            99999988888789999999887766666566677888642110000000000                          0


Q ss_pred             ccccccCCccccchhhhccccccccccchhhh-ccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccccc
Q 015488          156 DEEFSTSEETPLLSSARKRTTVRKSGFSSFLM-LFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILL  234 (406)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  234 (406)
                      ... .+..   ..+       ..++..++... +.+|..++.....++.       |.    ..+............   
T Consensus       227 ~~~-~~~~---~~~-------~~~~~~~~l~~~l~~~~i~~~l~fifl~-------~~----~~~~~~~~~f~~~~~---  281 (468)
T TIGR00788       227 MAL-LTLG---VLA-------NVKVQILGLRGAIQLLEIAKPLIFIFLS-------YA----NLPGASGSVFCATTQ---  281 (468)
T ss_pred             hhh-hhhh---HHH-------HHHHHHHHHHHHHhcHHHHHHHHHHHHH-------Hh----hcCCCCceeEEEEcc---
Confidence            000 0000   000       00000111111 1122222211111110       00    001000000000000   


Q ss_pred             ccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh----hh-----hhH-HHHHHHHHH
Q 015488          235 SENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT----LQ-----SNI-LLTALLSGA  304 (406)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~----~~-----~~~-~~~~~~~~~  304 (406)
                      ..+.............+++.++|....+...+|++.|+++..+.++..+.......    ..     ++. .........
T Consensus       282 ~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~  361 (468)
T TIGR00788       282 CLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIA  361 (468)
T ss_pred             cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHH
Confidence            01111122233334455778888888888889999999988877666654432110    00     111 111111111


Q ss_pred             HHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhch
Q 015488          305 RMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH  358 (406)
Q Consensus       305 ~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~  358 (406)
                      .+.....+.....+..++.|.+.+++.+++.+++..+|+.+++.+.+.+.+..+
T Consensus       362 ~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       362 EVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            111112234457788999999999999999999999999999987776665544

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.42  E-value=4.5e-10  Score=108.81  Aligned_cols=336  Identities=15%  Similarity=0.092  Sum_probs=176.6

Q ss_pred             CcchhhHHH-HHHHHHHHHHHhhcccHHHHH------------HHHHHhhc-----cCCcc-hhhHHHHHhhcCCCcc--
Q 015488            1 MEEGSILGG-ALVTFVAGLLSAFSPNYISLL------------ILRGLAGA-----GLGSG-HVFFSWFMEFVPPSNR--   59 (406)
Q Consensus         1 ~rr~~~~~~-~~~~~i~~~~~~~a~~~~~l~------------~~R~l~G~-----g~g~~-~~~~~~~~E~~p~~~R--   59 (406)
                      |||+.++.. .....++..+.++++++..+.            +.+++.|+     +.... ....+++.|.+|+++|  
T Consensus        71 GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~  150 (477)
T TIGR01301        71 GRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRT  150 (477)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHH
Confidence            688888774 555566667777777654322            24445554     33322 2334578999999865  


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhHHhc--cc-------------chhHHHHHHhhHHHHHH-HHHHHhccCCcchhhccCC
Q 015488           60 GKWMVVFSTFWTFGSVSEAALAWIVM--PI-------------LTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGR  123 (406)
Q Consensus        60 g~~~~~~~~~~~~G~~l~~~l~~~~~--~~-------------~~Wr~~f~i~~ip~~~~-~~~~~~~pESp~~l~~~~~  123 (406)
                      +...++.+.+..+|.++++.++....  +.             .+-|+.|.+.++..++. .+..+..+|.|... .+++
T Consensus       151 ~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~-~~~~  229 (477)
T TIGR01301       151 RIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIG-SDDF  229 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc-cccc
Confidence            57888899999999999998876531  10             16789999988776664 44556788876311 0000


Q ss_pred             hhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCcccccccCCccccchhhhccccccccccch-hhhcc-ChhhHHHHHH-H
Q 015488          124 ITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSS-FLMLF-SPRFFKTTIL-L  200 (406)
Q Consensus       124 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~-~  200 (406)
                      .++                           +.++ .++.++              ++.+++ +..+. -|+..++..+ .
T Consensus       230 ~~~---------------------------~~~~-~~~~~~--------------~~~~~~i~~~~~~mP~~m~~l~~vq  267 (477)
T TIGR01301       230 INS---------------------------EAAP-PSKHGE--------------EAFFGELFGAFKYLPRPVWILLLVT  267 (477)
T ss_pred             hhh---------------------------hccc-ccccch--------------hhhHHHHHHHHHHCCHHHHHHHHHH
Confidence            000                           0000 000000              000011 11111 1333333322 2


Q ss_pred             HHHHHHH-HHHHHHHHHHHHhhhccCCCCCcccccccCccch---hhHHHHHHHHhhhhHHHHHHHHHHhhhch-HHHHH
Q 015488          201 WVLYFGN-SFVYYGIVLLASELSGSQSKCSSSILLSENVQDA---SVYINVFITSFAELPGLLTAALLVDRVGR-KLSMT  275 (406)
Q Consensus       201 ~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~l~dr~gr-R~~~~  275 (406)
                      ++.|++. .+.+|...+...++...... ..     ...+++   .. ......++...+.+++-..+.+|+|+ |....
T Consensus       268 ffsW~a~f~~~~y~T~~vg~~v~~~~~~-~~-----~~y~~gvr~G~-~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~  340 (477)
T TIGR01301       268 CLNWIAWFPFILFDTDWMGREVYGGSVN-QG-----AKYDDGVRAGA-FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWG  340 (477)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHcCCCCc-ch-----hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence            3333322 11222222222222211100 00     000111   11 11223333444555666778889984 67767


Q ss_pred             HHHHHHHHHHHHHHhhhh---------------------hHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchh--hHHH
Q 015488          276 IMFIFVCIFLLPLVTLQS---------------------NILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR--STGA  332 (406)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R--~~a~  332 (406)
                      .+.++.++++....+..+                     ......+.....+.....++++|.+.+|..|.+.|  +.-.
T Consensus       341 ~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~m  420 (477)
T TIGR01301       341 IVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSM  420 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchh
Confidence            776666665554432111                     01122222222233344567889999999996545  8888


Q ss_pred             hHHHHhHhHHHHHHHHHHHHHhhhch-hh-HHHHHHHHHHHHHHHHHHhcccccCC
Q 015488          333 GVAYAVGRIGGMVCPLVAVGLVTSCH-QT-AAILLLEALIVLSVVVILLIPFETKG  386 (406)
Q Consensus       333 g~~~~~~~~g~~~~p~~~~~l~~~~~-~~-~~~~~~~~~~~i~~~~~~~~~~et~~  386 (406)
                      |+.|.+--+..++.....+.+.+..+ .. ..+.+=++..+++++...++.|.++.
T Consensus       421 gilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       421 GVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            99999888888887776665544443 22 33445557778888888888887764

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.41  E-value=3.7e-10  Score=102.19  Aligned_cols=302  Identities=20%  Similarity=0.159  Sum_probs=189.0

Q ss_pred             chhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcchh-hHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhh
Q 015488            3 EGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHV-FFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALA   81 (406)
Q Consensus         3 r~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~~-~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~   81 (406)
                      ++++.++.++..++.++-... +...++.+-.+.|.|++...+ ...++-|.+|+| -+.+++.|....++|..+++.++
T Consensus        77 er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~la  154 (395)
T COG2807          77 ERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALA  154 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhh
Confidence            345666667777777665555 788899999999999988765 456788888775 67899999999999999999988


Q ss_pred             HHhcccc-hhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCcccccc
Q 015488           82 WIVMPIL-TWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFS  160 (406)
Q Consensus        82 ~~~~~~~-~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (406)
                      ..+..+. +||....+=++|+++.++.++  |...|..     .                  ++.           + .+
T Consensus       155 vpla~~~~gW~~aL~~WAl~allAl~~Wl--Pq~~r~~-----~------------------~~~-----------~-~~  197 (395)
T COG2807         155 VPLAQHSGGWRGALGFWALLALLALLIWL--PQALREQ-----A------------------ASI-----------A-TK  197 (395)
T ss_pred             hHHHHhhccHHHHHHHHHHHHHHHHHHHh--hhccccc-----c------------------ccc-----------c-cc
Confidence            8876655 799999998999888876654  3322210     0                  000           0 00


Q ss_pred             cCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCccc
Q 015488          161 TSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQD  240 (406)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  240 (406)
                      .                 +    +-..+++++   ..+-+.+.+..++..||...-|.|.+..+.+..           .
T Consensus       198 ~-----------------~----~~~~vw~~~---~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~s-----------a  242 (395)
T COG2807         198 L-----------------V----SVRKVWRSP---LAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLS-----------A  242 (395)
T ss_pred             c-----------------c----cccccccCc---hhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCC-----------H
Confidence            0                 0    000111111   122234445567889999999998876543211           1


Q ss_pred             hhhHHHHHHHHhhhhHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 015488          241 ASVYINVFITSFAELPGLLTAALLVDRV-GRKLSMTIMFIFVCIFLLPLVT-LQSNILLTALLSGARMFSMGTFIIANIF  318 (406)
Q Consensus       241 ~~~~~~~~~~~~~~~~g~~~~~~l~dr~-grR~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (406)
                      .......-+..+..++.++....+.+|. ++|+..+.......+-...+.+ ..+......  +...+...++++..-..
T Consensus       243 ~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw~--~llG~G~G~~F~laL~l  320 (395)
T COG2807         243 AEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILWA--LLLGLGQGGAFPLALTL  320 (395)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHHH--HHHhCccchHHHHHHHH
Confidence            1222344455678889999999999975 6666655543333332332222 222222222  22222234455555444


Q ss_pred             cccccCc-chhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhH-HHHHHHHHHHHHHHHHHhc
Q 015488          319 APEIYPT-SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTA-AILLLEALIVLSVVVILLI  380 (406)
Q Consensus       319 ~~El~p~-~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~-~~~~~~~~~~i~~~~~~~~  380 (406)
                      ...-.+. +.-+.-.|+...+|++-+.++|.+++++.|..+++. +...+..+.+...+..+..
T Consensus       321 i~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a  384 (395)
T COG2807         321 ILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRA  384 (395)
T ss_pred             HHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhc
Confidence            4444444 555677788899999999999999999999887653 3445555555555555544

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.40  E-value=1e-11  Score=113.21  Aligned_cols=111  Identities=20%  Similarity=0.270  Sum_probs=98.2

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCc-chhHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSN-RGKWMVVFSTFWTFGSVSEA   78 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~-Rg~~~~~~~~~~~~G~~l~~   78 (406)
                      |+|.-++.+..++..++++-++..+|+++++.|.+||+|.+... +....+++.+|.+. ||+.+|..-.+..+|.+++|
T Consensus       134 Gy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgP  213 (464)
T KOG3764|consen  134 GYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGP  213 (464)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecC
Confidence            57888999999999999999999999999999999999988763 55667888888865 79999999999999999999


Q ss_pred             HhhHHhcccchhHHHHHHhhHHHHHHHHHHHhc
Q 015488           79 ALAWIVMPILTWRWLLALSAIPAFVLLIFIVFM  111 (406)
Q Consensus        79 ~l~~~~~~~~~Wr~~f~i~~ip~~~~~~~~~~~  111 (406)
                      +.++++-+..|.+.+|++.++..++-..+.+++
T Consensus       214 pfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~v  246 (464)
T KOG3764|consen  214 PFGGILYEFAGKSAPFLVLAIVLLLDGALQLLV  246 (464)
T ss_pred             CcccchHhhcCCcCcHHHHHHHHHHHHHHHHhe
Confidence            999998888899999999999888876666554

>PRK11462 putative transporter; Provisional

Probab=99.39  E-value=5.3e-10  Score=109.38  Aligned_cols=105  Identities=18%  Similarity=0.093  Sum_probs=66.0

Q ss_pred             cchhhHHHHHHHHHHHHHHhhccc------HHHHHHHHHHhhccCCcchh-hHHHHHhhcC-CCcchhHHHHHHHHHHHH
Q 015488            2 EEGSILGGALVTFVAGLLSAFSPN------YISLLILRGLAGAGLGSGHV-FFSWFMEFVP-PSNRGKWMVVFSTFWTFG   73 (406)
Q Consensus         2 rr~~~~~~~~~~~i~~~~~~~a~~------~~~l~~~R~l~G~g~g~~~~-~~~~~~E~~p-~~~Rg~~~~~~~~~~~~G   73 (406)
                      ||+-++++.+...++..+....|+      ...+.+.-++..++.....+ ..++..|.++ +++|.+..++-..+..+|
T Consensus        79 ~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG  158 (460)
T PRK11462         79 FRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAG  158 (460)
T ss_pred             cchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            455666677777777766654543      23344444444444433322 2345679888 788999999999888888


Q ss_pred             HHHHHHhhHHhcc-------cchhHHHHHHhhHHHHHHHH
Q 015488           74 SVSEAALAWIVMP-------ILTWRWLLALSAIPAFVLLI  106 (406)
Q Consensus        74 ~~l~~~l~~~~~~-------~~~Wr~~f~i~~ip~~~~~~  106 (406)
                      .++++.+...+..       ..+|+....+.+++.++..+
T Consensus       159 ~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~  198 (460)
T PRK11462        159 GMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLA  198 (460)
T ss_pred             HHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence            8777666543321       13688887777776655543

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.37  E-value=3.3e-10  Score=109.99  Aligned_cols=286  Identities=20%  Similarity=0.205  Sum_probs=163.3

Q ss_pred             cchhhHHHHHHHHHHHHHHhhc-c-------cHHHHHHHHHHhhccCCcchh-hHHHHHhhcC-CCcchhHHHHHHHHHH
Q 015488            2 EEGSILGGALVTFVAGLLSAFS-P-------NYISLLILRGLAGAGLGSGHV-FFSWFMEFVP-PSNRGKWMVVFSTFWT   71 (406)
Q Consensus         2 rr~~~~~~~~~~~i~~~~~~~a-~-------~~~~l~~~R~l~G~g~g~~~~-~~~~~~E~~p-~~~Rg~~~~~~~~~~~   71 (406)
                      ||+-++++.....++..+.... |       ....+.+.-++..++.....+ ..++..|.++ +++|.+..+.-..+..
T Consensus        71 rrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~  150 (428)
T PF13347_consen   71 RRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSM  150 (428)
T ss_pred             cceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHH
Confidence            5666667888888888877766 4       122345556555665554433 3456789988 4789999999888888


Q ss_pred             HHHHHHHHhhHHhc----c--c-chhHHHHHHhhHHHHHHH-HHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCC
Q 015488           72 FGSVSEAALAWIVM----P--I-LTWRWLLALSAIPAFVLL-IFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLP  143 (406)
Q Consensus        72 ~G~~l~~~l~~~~~----~--~-~~Wr~~f~i~~ip~~~~~-~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~  143 (406)
                      +|.++.+.+...+.    +  . .+|++...+.++..++.. +..+..+|.++      +.+                  
T Consensus       151 ~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~------~~~------------------  206 (428)
T PF13347_consen  151 IGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSV------EVT------------------  206 (428)
T ss_pred             HHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccc------ccc------------------
Confidence            88876665554432    1  1 279999998888776654 34455666110      000                  


Q ss_pred             CCCCcCCCCCCcccccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHH-HHHHHHHHHHHHHHHHHHhhh
Q 015488          144 SGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLW-VLYFGNSFVYYGIVLLASELS  222 (406)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~  222 (406)
                                  ++    .++.+              -.+.++..++++.+....... +.++...+..-...++.....
T Consensus       207 ------------~~----~~~~~--------------~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl  256 (428)
T PF13347_consen  207 ------------EQ----EKKIS--------------LRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVL  256 (428)
T ss_pred             ------------cc----ccccc--------------cccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHh
Confidence                        00    00000              001222333333333222222 222222211111111222111


Q ss_pred             ccCCCCCcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHH
Q 015488          223 GSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ--SNILLTAL  300 (406)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  300 (406)
                      .              ..+. ......+..+..+++..+.++++||+|+|+.+..+..+.++....+....  +.+.....
T Consensus       257 ~--------------~~~~-~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  321 (428)
T PF13347_consen  257 G--------------NEGL-ISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLIL  321 (428)
T ss_pred             c--------------Cchh-hHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            1              0111 11122344566788889999999999999999888777776555444332  33333333


Q ss_pred             HHHHHHHhhhhhhhhhhhcccccCc-------chhhHHHhHHHHhHhHHHHHHHHHHHHHhhh
Q 015488          301 LSGARMFSMGTFIIANIFAPEIYPT-------SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS  356 (406)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~El~p~-------~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~  356 (406)
                      ...........+...+.+.+|+.+.       +..+.-.|+.+...+++..+++.+.+.+++.
T Consensus       322 ~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~  384 (428)
T PF13347_consen  322 FILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL  384 (428)
T ss_pred             HHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            3333344445567778888888873       3347778888888899988888877766543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.36  E-value=6.1e-10  Score=109.48  Aligned_cols=108  Identities=15%  Similarity=0.083  Sum_probs=66.3

Q ss_pred             HHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh----hhh-hHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 015488          249 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT----LQS-NILLTALLSGARMFSMGTFIIANIFAPEIY  323 (406)
Q Consensus       249 ~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~El~  323 (406)
                      ...+..+++.++.+++.||+|+|+.+..+..+..+....+..    ..+ ............+.....+...+.+.+|..
T Consensus       274 ~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~i  353 (473)
T PRK10429        274 YAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTV  353 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            334667888889999999999999987766544433222211    111 121111111222222334456677888884


Q ss_pred             C-----cchh--hHHHhHHHHhHhHHHHHHHHHHHHHhhh
Q 015488          324 P-----TSMR--STGAGVAYAVGRIGGMVCPLVAVGLVTS  356 (406)
Q Consensus       324 p-----~~~R--~~a~g~~~~~~~~g~~~~p~~~~~l~~~  356 (406)
                      +     +..|  +...|....+.+++..+++.+.+.+++.
T Consensus       354 d~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~  393 (473)
T PRK10429        354 DYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGL  393 (473)
T ss_pred             hhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4     5554  5566788888899999999888877653

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.35  E-value=5.3e-12  Score=124.64  Aligned_cols=134  Identities=16%  Similarity=0.011  Sum_probs=97.4

Q ss_pred             CcchhhHHHHHHHHHHHHH---HhhcccHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHH-HHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLL---SAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVV-FSTFWTFGSV   75 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~---~~~a~~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~-~~~~~~~G~~   75 (406)
                      +||+.++.+.++..++...   ...+++...++++|++.|++.+... ....+..|.+|++.||...++ ++.+...| .
T Consensus       314 grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g-~  392 (490)
T PRK10642        314 GRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVA-G  392 (490)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHH-H
Confidence            6888887776554433322   2335567888999999998765542 344567899999999998886 56655444 5


Q ss_pred             HHHHhhHHhcc-cchhHHHHHHhhHHHHHHHHHHHhccCCcchhhcc-----CChhhHHHHHHHHH
Q 015488           76 SEAALAWIVMP-ILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTK-----GRITDAHNILDKIA  135 (406)
Q Consensus        76 l~~~l~~~~~~-~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~-----~~~~~a~~~l~~~~  135 (406)
                      ++|.+...+.+ ..+|+.++++..++.++..+..+++||||+|+.++     ||.|||++.++|++
T Consensus       393 ~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~  458 (490)
T PRK10642        393 LTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHY  458 (490)
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCccccccchhhHHHHhhccc
Confidence            56665554443 34688888877778777777777889999999865     99999999999886

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.33  E-value=1.9e-09  Score=99.72  Aligned_cols=322  Identities=17%  Similarity=0.172  Sum_probs=183.5

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhccc--H-HHHHHHHHHhhccCCcchhh-HHHHHhhcCCCcchhHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPN--Y-ISLLILRGLAGAGLGSGHVF-FSWFMEFVPPSNRGKWMVVFSTFWTFGSVS   76 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~--~-~~l~~~R~l~G~g~g~~~~~-~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l   76 (406)
                      .||+.+-....+.+++.++..++++  + ....+.-.+..++.....+. .+++..+.++++-|+..+.-...-.+|.++
T Consensus        87 ~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i  166 (438)
T COG2270          87 PRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVI  166 (438)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccccccccccccchH
Confidence            3788888888888888888877766  3 33444555666776655454 456778899988888765533333344433


Q ss_pred             HHHhhH--Hh-c---------------ccchhHHHHHHhhHHHHHH-HHHHHhccCCcchhhccCCh-hhHHHHHHHHHH
Q 015488           77 EAALAW--IV-M---------------PILTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRI-TDAHNILDKIAQ  136 (406)
Q Consensus        77 ~~~l~~--~~-~---------------~~~~Wr~~f~i~~ip~~~~-~~~~~~~pESp~~l~~~~~~-~~a~~~l~~~~~  136 (406)
                      .-....  ++ .               +...=|..+.+.++.-++. +..++..||-++   .+... +-.++..+++.+
T Consensus       167 ~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~---~~~~~~~~l~~g~k~L~~  243 (438)
T COG2270         167 LLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEK---ISSPPPTALRNGFKELKS  243 (438)
T ss_pred             HHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhccccccc---ccccchHHHHHHHHHHHH
Confidence            222211  11 1               2234688888887765554 455556655543   00000 000011111110


Q ss_pred             HcCCCCCCCCCcCCCCCCcccccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHH--HHHHHHHHH
Q 015488          137 FNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYF--GNSFVYYGI  214 (406)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  214 (406)
                                                                     ++++.+..+.....++.++.+.  .+.+.-.+.
T Consensus       244 -----------------------------------------------t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~  276 (438)
T COG2270         244 -----------------------------------------------TFKEIRGRKNLVLFLIARFFYIDGVNTILAMGG  276 (438)
T ss_pred             -----------------------------------------------HHHHHhcccchHHHHHHHHHHHhhHHHHHHHHH
Confidence                                                           1111111111122222222221  122222222


Q ss_pred             HHHHHhhhccCCCCCcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhh
Q 015488          215 VLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSN  294 (406)
Q Consensus       215 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~  294 (406)
                      .+-...+               +..+.+.....+..++++++|+++.|++.||+|.|+++.++.++..+..+........
T Consensus       277 ~fg~~~~---------------gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~  341 (438)
T COG2270         277 VFGAADL---------------GLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGE  341 (438)
T ss_pred             HHHHHHc---------------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcccc
Confidence            2211111               1233456667777889999999999999999999998888766655544433332322


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhh-HHHHHHHHHHHHH
Q 015488          295 ILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQT-AAILLLEALIVLS  373 (406)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~-~~~~~~~~~~~i~  373 (406)
                      .....+.+....+..+..+..-.|.+++.|++.-+...|+-+..+|..++++|+....+.+.+++. ..+..+.++..++
T Consensus       342 ~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iG  421 (438)
T COG2270         342 LDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIG  421 (438)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence            222223223333445667788889999999999999999999999999999999988776666543 3445555555555


Q ss_pred             HHHHHhcccccCCcc
Q 015488          374 VVVILLIPFETKGKE  388 (406)
Q Consensus       374 ~~~~~~~~~et~~~~  388 (406)
                      .+. +...|+.+.++
T Consensus       422 l~~-L~~v~~~~~~~  435 (438)
T COG2270         422 LLL-LLRVKVPGRRE  435 (438)
T ss_pred             Hhh-EEeecCCCCcc
Confidence            544 34444444433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.26  E-value=1.6e-09  Score=106.60  Aligned_cols=181  Identities=12%  Similarity=0.179  Sum_probs=106.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchH
Q 015488          192 RFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRK  271 (406)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR  271 (406)
                      +.++.....|..++......++.....|.+..+.+           ..............++..++.++.|+++||+|||
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-----------ls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r  101 (476)
T PLN00028         33 PHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLN-----------LTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPR  101 (476)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence            34455555566555555555555444444432211           1111112223334456778999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHH
Q 015488          272 LSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAV  351 (406)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~  351 (406)
                      +.+..+.+..++..+......+........+...+.. +.......+.+|.+|++.|+.+.|+.+..+.+|+.+++.+.+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~-~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~  180 (476)
T PLN00028        102 YGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSL-ATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMP  180 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHH
Confidence            9888876666655444333332222211111111211 222233446789999999999999999888888877776665


Q ss_pred             HHhh----h-----chhhHHHHHHHHHHHHHHHHHHhccccc
Q 015488          352 GLVT----S-----CHQTAAILLLEALIVLSVVVILLIPFET  384 (406)
Q Consensus       352 ~l~~----~-----~~~~~~~~~~~~~~~i~~~~~~~~~~et  384 (406)
                      .+..    .     .+....|.+.++++++.++..++++++.
T Consensus       181 ~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~  222 (476)
T PLN00028        181 LVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDL  222 (476)
T ss_pred             HHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcC
Confidence            4322    1     2344667778887777777766665443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.25  E-value=1e-08  Score=97.72  Aligned_cols=289  Identities=17%  Similarity=0.142  Sum_probs=162.3

Q ss_pred             cchhhHHHHHHHHHHHHHHhhccc------HHHHHHHHHHhhccCCcchhh-HHHHHhhcC-CCcchhHHHHHHHHHHHH
Q 015488            2 EEGSILGGALVTFVAGLLSAFSPN------YISLLILRGLAGAGLGSGHVF-FSWFMEFVP-PSNRGKWMVVFSTFWTFG   73 (406)
Q Consensus         2 rr~~~~~~~~~~~i~~~~~~~a~~------~~~l~~~R~l~G~g~g~~~~~-~~~~~E~~p-~~~Rg~~~~~~~~~~~~G   73 (406)
                      ||+-++++.+...+...++-.+++      ....++.-.+.|++.....+. .++..|..+ ++||.+..++-+.+..+|
T Consensus        82 fRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g  161 (467)
T COG2211          82 FRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLG  161 (467)
T ss_pred             ccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHH
Confidence            677788888999999988888874      334555555666655443222 234567755 478999999999999999


Q ss_pred             HHHHHHhhHHh----cc---cchhHHHHHHhhHHHHHHHHHH-HhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCC
Q 015488           74 SVSEAALAWIV----MP---ILTWRWLLALSAIPAFVLLIFI-VFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSG  145 (406)
Q Consensus        74 ~~l~~~l~~~~----~~---~~~Wr~~f~i~~ip~~~~~~~~-~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~  145 (406)
                      .++...+...+    .+   ..|||..-++.++.+.+..+.. +...|-+.         ++.                 
T Consensus       162 ~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~---------~~~-----------------  215 (467)
T COG2211         162 GLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVV---------ETQ-----------------  215 (467)
T ss_pred             HHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccC---------ccc-----------------
Confidence            87766655443    22   4589998888877776664443 33333221         000                 


Q ss_pred             CCcCCCCCCcccccccCCccccchhhhcccccccccc-chhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 015488          146 NLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGF-SSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGS  224 (406)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  224 (406)
                       .        .   ++ ++              +.+. .++..+++++.++..+...+..+......-+...+....   
T Consensus       216 -~--------~---~~-~~--------------~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y---  265 (467)
T COG2211         216 -P--------T---KT-GV--------------KLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTY---  265 (467)
T ss_pred             -c--------C---cc-cc--------------cccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEE---
Confidence             0        0   00 00              0000 122334444444333332222221111111111111000   


Q ss_pred             CCCCCcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHH
Q 015488          225 QSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSN--ILLTALLS  302 (406)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  302 (406)
                                ..+..+...+..........+.+.++...+.+|+|+|+++.++.++..+....+++...+  ....+...
T Consensus       266 ----------~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~  335 (467)
T COG2211         266 ----------VLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALI  335 (467)
T ss_pred             ----------EcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHH
Confidence                      011222333444455556666778999999999999999999877766655544443322  22222222


Q ss_pred             HHHHHhhhhhhhhhhhccccc-----Ccchh--hHHHhHHHHhHhHHHHHHHHHHHHHhhh
Q 015488          303 GARMFSMGTFIIANIFAPEIY-----PTSMR--STGAGVAYAVGRIGGMVCPLVAVGLVTS  356 (406)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~El~-----p~~~R--~~a~g~~~~~~~~g~~~~p~~~~~l~~~  356 (406)
                      ..........+..|...+|..     -|..|  +...|...++.++|..++.++.+.++..
T Consensus       336 i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~  396 (467)
T COG2211         336 IAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGA  396 (467)
T ss_pred             HHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334455677888888664     34445  5566777888889988888877766543

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.24  E-value=3.1e-10  Score=91.49  Aligned_cols=133  Identities=18%  Similarity=0.186  Sum_probs=93.7

Q ss_pred             hhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchhhHH
Q 015488          252 FAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTG  331 (406)
Q Consensus       252 ~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a  331 (406)
                      ++.+++....+++.||+|||+.+..+.....+.........+............+......+..+.+..|.+|++.|+++
T Consensus         9 ~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (141)
T TIGR00880         9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVA   88 (141)
T ss_pred             hHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHH
Confidence            44566778899999999999998877666555544433322222222222222222333456677888999999999999


Q ss_pred             HhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhccccc
Q 015488          332 AGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  384 (406)
Q Consensus       332 ~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et  384 (406)
                      .++.+....++..++|.+.+.+.+..+....+.+.+..++++.+..+++.||+
T Consensus        89 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880        89 LGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             HHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            99999999999999999988777655554567777777777777777777664

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.24  E-value=3.3e-08  Score=94.43  Aligned_cols=110  Identities=17%  Similarity=0.198  Sum_probs=74.1

Q ss_pred             HHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHH----HHHHhhhhhhhhhhhccccc
Q 015488          249 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL-QSNILLTALLSG----ARMFSMGTFIIANIFAPEIY  323 (406)
Q Consensus       249 ~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~El~  323 (406)
                      +..+.+++-....+++..|+|-|++++.+.+...+=...+... .+..........    -.......+.....+..|..
T Consensus       251 l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~  330 (400)
T PF03825_consen  251 LGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIA  330 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhC
Confidence            4456788898999999999999999888766655423222222 222222221111    11111223455667889999


Q ss_pred             CcchhhHHHhHHHHhH-hHHHHHHHHHHHHHhhhch
Q 015488          324 PTSMRSTGAGVAYAVG-RIGGMVCPLVAVGLVTSCH  358 (406)
Q Consensus       324 p~~~R~~a~g~~~~~~-~~g~~~~p~~~~~l~~~~~  358 (406)
                      |++.|++++|+.++.. .+|+.++.++.+++.+..+
T Consensus       331 p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g  366 (400)
T PF03825_consen  331 PPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG  366 (400)
T ss_pred             CccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence            9999999999998875 4788899999998887654

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.20  E-value=1.9e-09  Score=104.12  Aligned_cols=138  Identities=9%  Similarity=-0.026  Sum_probs=94.3

Q ss_pred             HHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchh
Q 015488          249 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  328 (406)
Q Consensus       249 ~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R  328 (406)
                      ...++..++.+..|++.||+|||+.+..+.++.++.........+.......-+...+...+..+....+.+|.+|++.|
T Consensus        51 ~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r  130 (412)
T TIGR02332        51 LFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFR  130 (412)
T ss_pred             HHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHH
Confidence            33456678888999999999999999887776666555443333322222211222222233345556778999999999


Q ss_pred             hHHHhHHHHhHhHHHHHHHHHHHHHhhh------chhhHHHHHHHHHHHHHHHHHHhcccccCC
Q 015488          329 STGAGVAYAVGRIGGMVCPLVAVGLVTS------CHQTAAILLLEALIVLSVVVILLIPFETKG  386 (406)
Q Consensus       329 ~~a~g~~~~~~~~g~~~~p~~~~~l~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~et~~  386 (406)
                      +++.|+.+....+|..++|.+.+++.+.      .+....|.+.++..++.+++..++.||++.
T Consensus       131 g~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       131 ARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            9999999999899999999888766532      345566777777776666666666677653

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.19  E-value=1.9e-09  Score=103.87  Aligned_cols=140  Identities=17%  Similarity=0.134  Sum_probs=92.7

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCc
Q 015488          246 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPT  325 (406)
Q Consensus       246 ~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~  325 (406)
                      ......++..++.++.|+++||+|||+.+..+.++..+..+......+............+......+....+.+|.+|+
T Consensus        55 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~  134 (406)
T PRK11551         55 AFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGP  134 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCH
Confidence            33444567788999999999999999999887766555444333322222222222222222233345667788999999


Q ss_pred             chhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccC
Q 015488          326 SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  385 (406)
Q Consensus       326 ~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  385 (406)
                      +.|+++.++.+....+|+.++|.+...+.+..+....+.+.+++.++..+...++.||++
T Consensus       135 ~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  194 (406)
T PRK11551        135 RLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESR  194 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            999999999999999999999887665555444445566666655555555555556654

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.19  E-value=1.7e-09  Score=103.23  Aligned_cols=143  Identities=19%  Similarity=0.138  Sum_probs=99.0

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccC
Q 015488          245 INVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYP  324 (406)
Q Consensus       245 ~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p  324 (406)
                      .......++..++.++.|.+.||+|||+.+..+..+..+.........+............+......+....+..|.+|
T Consensus        44 ~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~  123 (385)
T TIGR00710        44 MTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYP  123 (385)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcC
Confidence            33444456678889999999999999999988766665554443333322222222222222223334566778899999


Q ss_pred             cchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccCCc
Q 015488          325 TSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGK  387 (406)
Q Consensus       325 ~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~  387 (406)
                      ++.|+++.|+.+....+|..++|.+.+.+.+..+....+.+.++.+++..+...+..||++.+
T Consensus       124 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (385)
T TIGR00710       124 GEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPY  186 (385)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            999999999999999999999999888776655555667777777777766666666776544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.18  E-value=1.7e-09  Score=103.76  Aligned_cols=141  Identities=15%  Similarity=0.080  Sum_probs=95.4

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcc
Q 015488          247 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  326 (406)
Q Consensus       247 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  326 (406)
                      .....+...++.++.|+++||+|||+.+..+.+...+.........+......................+.+..|.+|.+
T Consensus        44 ~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~  123 (392)
T PRK10473         44 FSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDR  123 (392)
T ss_pred             HHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHH
Confidence            33344566778899999999999999998877666555444333222222111111122222223455677889999999


Q ss_pred             hhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccCCc
Q 015488          327 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGK  387 (406)
Q Consensus       327 ~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~  387 (406)
                      .|+++.++.+....++..++|.+.+.+.+..+....+.+.++++++..++.++..||++.+
T Consensus       124 ~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  184 (392)
T PRK10473        124 RRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPA  184 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence            9999999999999999989998877665555555667777777777766666666776544

>TIGR00895 2A0115 benzoate transport

Probab=99.18  E-value=1e-09  Score=104.98  Aligned_cols=138  Identities=20%  Similarity=0.143  Sum_probs=94.6

Q ss_pred             HHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcch
Q 015488          248 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  327 (406)
Q Consensus       248 ~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~  327 (406)
                      ....++..++.++.++++||+|||+.+..+.++..+.........+............+......+....+.+|.+|.+.
T Consensus        59 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (398)
T TIGR00895        59 SAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF  138 (398)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh
Confidence            34446678899999999999999999988776666554443333322222222222222223345667888999999999


Q ss_pred             hhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccC
Q 015488          328 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  385 (406)
Q Consensus       328 R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  385 (406)
                      |+++.|+......+|+.++|.+.+.+.+..+....+.+.+..+++..++...+.||+.
T Consensus       139 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (398)
T TIGR00895       139 RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESI  196 (398)
T ss_pred             hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence            9999999999999999999998887776655555566665555555555555556653

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.18  E-value=4.2e-09  Score=107.40  Aligned_cols=108  Identities=17%  Similarity=0.116  Sum_probs=77.3

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcc
Q 015488          247 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  326 (406)
Q Consensus       247 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  326 (406)
                      .....++.++|.+++|+++||+|||+.++++.++.++..+......+.....+.-+...++..+..+..+.+.+|.+|.+
T Consensus       208 ~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~  287 (742)
T TIGR01299       208 GLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQE  287 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Confidence            34445778899999999999999999998877666655444333332222222222333334455678899999999999


Q ss_pred             hhhHHHhHHHHhHhHHHHHHHHHHHHHh
Q 015488          327 MRSTGAGVAYAVGRIGGMVCPLVAVGLV  354 (406)
Q Consensus       327 ~R~~a~g~~~~~~~~g~~~~p~~~~~l~  354 (406)
                      .|+...++...+..+|+++++.+...+.
T Consensus       288 ~Rg~~~g~~~~~~~iG~ila~~la~~il  315 (742)
T TIGR01299       288 KRGEHLSWLCMFWMIGGIYAAAMAWAII  315 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998898888887655443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.17  E-value=2.2e-09  Score=104.51  Aligned_cols=168  Identities=16%  Similarity=0.199  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhh-chHHHHHHH
Q 015488          199 LLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRV-GRKLSMTIM  277 (406)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~-grR~~~~~~  277 (406)
                      .++...+...+.+|++..+.+....+.          .+..................++.+++|+++||+ |||+.+..+
T Consensus        13 ~l~~~~~~e~fs~Yg~~~~L~~yL~~~----------lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG   82 (493)
T PRK15462         13 YVVALQIWEYFSFYGMRALLILYLTNQ----------LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLG   82 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHH
Confidence            334444556677887766655443211          011111222223333455677889999999999 999998887


Q ss_pred             HHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhhhh-hhhhhhhcccccCcc--hhhHHHhHHHHhHhHHHHHHHHHHHHH
Q 015488          278 FIFVCIFLLPLVTLQ-SNILLTALLSGARMFSMGT-FIIANIFAPEIYPTS--MRSTGAGVAYAVGRIGGMVCPLVAVGL  353 (406)
Q Consensus       278 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~El~p~~--~R~~a~g~~~~~~~~g~~~~p~~~~~l  353 (406)
                      .++..+....+.... ........ ........+. .+....+.+|+||++  .|.++.++.++.+++|++++|.+.+++
T Consensus        83 ~il~~lg~lll~~~~~~~~~~~l~-l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L  161 (493)
T PRK15462         83 ALLMAIGHVVLGASEIHPSFLYLS-LAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYA  161 (493)
T ss_pred             HHHHHHHHHHHHHhhcchhHHHHH-HHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHH
Confidence            766555433322211 11111111 1111112222 244567889999986  799999999999999999999999988


Q ss_pred             hhhchhhHHHHHHHHHHHHHHHHH
Q 015488          354 VTSCHQTAAILLLEALIVLSVVVI  377 (406)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~i~~~~~  377 (406)
                      .+..+.+..|.+.++..+++.+..
T Consensus       162 ~~~~Gw~~~F~iaaigm~l~li~~  185 (493)
T PRK15462        162 QEEYSWAMGFGLAAVGMIAGLVIF  185 (493)
T ss_pred             HhhhChHHHHHHHHHHHHHHHHHH
Confidence            776666666666555555544443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.15  E-value=3.8e-09  Score=102.77  Aligned_cols=138  Identities=12%  Similarity=0.080  Sum_probs=94.3

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcc
Q 015488          247 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  326 (406)
Q Consensus       247 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  326 (406)
                      .....++..++.+..|++.||+|||+.+..+.++.++.........+............+.....++....+.+|.+|.+
T Consensus        64 ~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~  143 (434)
T PRK11663         64 ATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRT  143 (434)
T ss_pred             HHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHH
Confidence            34445677889999999999999999998887777766554433332222211111122222223455677889999999


Q ss_pred             hhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhccccc
Q 015488          327 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  384 (406)
Q Consensus       327 ~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et  384 (406)
                      .|+++.|+.+....+|+.++|.+.+.+.+..+....+.+.++.+++.++...++.+|+
T Consensus       144 ~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~  201 (434)
T PRK11663        144 ERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK  201 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999998888777666655667776766655544444444443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.15  E-value=7.1e-09  Score=99.51  Aligned_cols=137  Identities=12%  Similarity=0.066  Sum_probs=93.7

Q ss_pred             HHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchh
Q 015488          249 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  328 (406)
Q Consensus       249 ~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R  328 (406)
                      ...+...++.+..+.+.||+|||+.+..+.++.++.........+.+.....-....+......+....+.+|.+|++.|
T Consensus        63 ~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~  142 (394)
T PRK10213         63 VTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTV  142 (394)
T ss_pred             HHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHH
Confidence            34566777889999999999999999888777766544433332222222221222222233445667788999999999


Q ss_pred             hHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccC
Q 015488          329 STGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  385 (406)
Q Consensus       329 ~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  385 (406)
                      +.+.++......++..++|.+.+.+.+..+....|.+.+++++++.+......||++
T Consensus       143 ~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~  199 (394)
T PRK10213        143 PKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP  199 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            999999999999999999999887776655556666666666665555444456654

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.15  E-value=5e-09  Score=98.49  Aligned_cols=140  Identities=19%  Similarity=0.107  Sum_probs=96.5

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCc
Q 015488          246 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPT  325 (406)
Q Consensus       246 ~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~  325 (406)
                      ......+...++.+..|.++||+|||+.+..+.++.++......+..+.+......+...+......+....+..|.+|.
T Consensus        37 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~  116 (352)
T PF07690_consen   37 LFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPP  116 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchh
Confidence            34445567788999999999999999988888777766633322222222222222222233334556778889999999


Q ss_pred             chhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccC
Q 015488          326 SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  385 (406)
Q Consensus       326 ~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  385 (406)
                      +.|+.+.|+.+....+|..++|.+.+.+.+..+....+.+.++.+++..++..++.++++
T Consensus       117 ~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~  176 (352)
T PF07690_consen  117 EERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPP  176 (352)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---S
T ss_pred             hhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcc
Confidence            999999999999999999999999887665555556788888888888775444444433

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.14  E-value=4.9e-09  Score=100.60  Aligned_cols=181  Identities=15%  Similarity=0.170  Sum_probs=105.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHH
Q 015488          193 FFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKL  272 (406)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~  272 (406)
                      .++.....++.++...+..+......+.+..+.+           ..............+...++.++.|.++||+|||+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~   78 (405)
T TIGR00891        10 QWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFG-----------LTTVDAASLISAALISRWFGALMFGLWGDRYGRRL   78 (405)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            3444445556565555555555554454432211           11112222333445677889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHH
Q 015488          273 SMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVG  352 (406)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~  352 (406)
                      .+..+.++..+..+......+........+..........+....+..|.+|++.|+.+.|+......+|..++|.+.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~  158 (405)
T TIGR00891        79 PMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSL  158 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99887666655544433322222221111222222233445567788999999999999999999999999999988776


Q ss_pred             Hhhhch--hhHHHHHHHHHHHHHHHHHHhcccccC
Q 015488          353 LVTSCH--QTAAILLLEALIVLSVVVILLIPFETK  385 (406)
Q Consensus       353 l~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~et~  385 (406)
                      +.+..+  ....+.+.+...++. ++.....||++
T Consensus       159 l~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~~~~  192 (405)
T TIGR00891       159 VVPVWGDGWRALFFISILPIIFA-LWLRKNIPEAE  192 (405)
T ss_pred             HHHhcCccHHHHHHHHHHHHHHH-HHHHHhCCCCh
Confidence            655443  333444433333333 33334445653

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.14  E-value=1.5e-09  Score=103.51  Aligned_cols=141  Identities=14%  Similarity=0.127  Sum_probs=98.5

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCc
Q 015488          246 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPT  325 (406)
Q Consensus       246 ~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~  325 (406)
                      ......+...++.++.|.++||+|||+.+..+.++.++.........+............+......+....+.+|.+|+
T Consensus        34 ~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~  113 (399)
T TIGR00893        34 VFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPA  113 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCH
Confidence            33445567788899999999999999998887766655544433333222222222222222333456677889999999


Q ss_pred             chhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccCC
Q 015488          326 SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  386 (406)
Q Consensus       326 ~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~  386 (406)
                      +.|+++.|+......+|..++|.+.+.+.+..+....+.+.++.+++..+...++.||++.
T Consensus       114 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (399)
T TIGR00893       114 SERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ  174 (399)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence            9999999999999999999999988877666665666777777777776666666666543

>PRK10054 putative transporter; Provisional

Probab=99.13  E-value=4.5e-09  Score=100.89  Aligned_cols=135  Identities=13%  Similarity=0.079  Sum_probs=89.3

Q ss_pred             HHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchh
Q 015488          249 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  328 (406)
Q Consensus       249 ~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R  328 (406)
                      ...+.++++.+..|.++||+|||+.+..+.+...+....+....+...................+....+.+|.+|++.|
T Consensus        51 ~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  130 (395)
T PRK10054         51 IALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSK  130 (395)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHH
Confidence            33456778889999999999999988877665555444333333222221111111111122244567778899999999


Q ss_pred             hHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhccccc
Q 015488          329 STGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  384 (406)
Q Consensus       329 ~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et  384 (406)
                      +++.|+.+....+|..++|.+.+.+.+ .+....|.+.+++++++.+...++.||+
T Consensus       131 ~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~  185 (395)
T PRK10054        131 TKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRS  185 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999998886654 4445567777777666655555544444

>PRK10504 putative transporter; Provisional

Probab=99.12  E-value=8.4e-09  Score=101.47  Aligned_cols=179  Identities=11%  Similarity=0.021  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHH
Q 015488          196 TTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMT  275 (406)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~  275 (406)
                      ..+.++..++...+..+....+.|.+..+.+           ..............++..++.++.|+++||+|||+.+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g-----------~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~   79 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLG-----------ESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFF   79 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-----------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence            3444555555555555555545554432211           11111122223334566778899999999999999988


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhh
Q 015488          276 IMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT  355 (406)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~  355 (406)
                      .+..+.++.........+.......-....+......+....+..|.+|++.|+++.|+.+....+|..++|.+.+.+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~  159 (471)
T PRK10504         80 TAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVE  159 (471)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence            77665555443333322222222211222222223345667778899999999999999999999999999999887777


Q ss_pred             hchhhHHHHHHHHHHHHHHHHHHhcccccC
Q 015488          356 SCHQTAAILLLEALIVLSVVVILLIPFETK  385 (406)
Q Consensus       356 ~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  385 (406)
                      ..+..+.|.+...+++++.+......|+.+
T Consensus       160 ~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~  189 (471)
T PRK10504        160 YASWHWIFLINIPVGIIGAIATLMLMPNYT  189 (471)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            655556666666666666666665555544

>PRK03699 putative transporter; Provisional

Probab=99.12  E-value=1.4e-08  Score=97.59  Aligned_cols=130  Identities=15%  Similarity=0.153  Sum_probs=85.3

Q ss_pred             HHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchh
Q 015488          249 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  328 (406)
Q Consensus       249 ~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R  328 (406)
                      ...++..++.+++|++.||+|||+.+..+.++..+.........+............++.....+....+.+|.+|++.|
T Consensus        50 ~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r  129 (394)
T PRK03699         50 FLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQR  129 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchH
Confidence            34567788999999999999999998887666555444333333222222221222222222334556778899999999


Q ss_pred             hHHHhHHHHhHhHHHHHHHHHHHHHhhh-chhhHHHHHHHHHHHHHHHHHH
Q 015488          329 STGAGVAYAVGRIGGMVCPLVAVGLVTS-CHQTAAILLLEALIVLSVVVIL  378 (406)
Q Consensus       329 ~~a~g~~~~~~~~g~~~~p~~~~~l~~~-~~~~~~~~~~~~~~~i~~~~~~  378 (406)
                      +.+.++.+....+++.++|.+.+.+... .+....+.+.++.+++..+...
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~  180 (394)
T PRK03699        130 GSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTL  180 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            9999998888888888889887766543 3445566666666655544433

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.12  E-value=7.3e-09  Score=100.45  Aligned_cols=118  Identities=19%  Similarity=0.134  Sum_probs=81.2

Q ss_pred             HHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcch
Q 015488          248 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  327 (406)
Q Consensus       248 ~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~  327 (406)
                      ....++..++.++.|+++||+|||+.+..+.+..++.........+.......-....+...+.++....+..|.+|++.
T Consensus        60 ~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~  139 (426)
T PRK12307         60 TAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL  139 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH
Confidence            34456778899999999999999999988877766655443333322222222122222223345667778899999999


Q ss_pred             hhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHH
Q 015488          328 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILL  365 (406)
Q Consensus       328 R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~  365 (406)
                      |+++.|+......+|.+++|.+.+.+.+..+....+.+
T Consensus       140 r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i  177 (426)
T PRK12307        140 KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV  177 (426)
T ss_pred             hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH
Confidence            99999999988889999998887766655444444444

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.11  E-value=7.6e-09  Score=102.45  Aligned_cols=164  Identities=19%  Similarity=0.197  Sum_probs=101.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhch
Q 015488          191 PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGR  270 (406)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gr  270 (406)
                      ++.++....+++.++.+.+.........|.+..+.           +..............++..++.+..|+++||+||
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----------~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~   84 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEF-----------GLTTVQAASLISAAFISRWFGGLLLGAMGDRYGR   84 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            34445555556666665555555554445443211           1111122223334456778889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHH
Q 015488          271 KLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA  350 (406)
Q Consensus       271 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~  350 (406)
                      |+.+..+.++.++.........+............+...+.++....+..|.+|.+.|+.+.++.+....+|+.++|.+.
T Consensus        85 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  164 (496)
T PRK03893         85 RLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVY  164 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988877666555444333332222222222222223334556677889999999999999999999999999999988


Q ss_pred             HHHhhhchhhHHHHH
Q 015488          351 VGLVTSCHQTAAILL  365 (406)
Q Consensus       351 ~~l~~~~~~~~~~~~  365 (406)
                      +.+.+..+....+.+
T Consensus       165 ~~l~~~~~w~~~f~~  179 (496)
T PRK03893        165 SLVVPVWGWRALFFI  179 (496)
T ss_pred             HHHhccCCHHHHHHH
Confidence            877665544444443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.11  E-value=2.7e-07  Score=90.05  Aligned_cols=105  Identities=15%  Similarity=0.123  Sum_probs=77.3

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcc-cHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCC--cchhHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSP-NYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPS--NRGKWMVVFSTFWTFGSVS   76 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~-~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~--~Rg~~~~~~~~~~~~G~~l   76 (406)
                      |||+.++++.++..++..+.+... +...+.+.-.+.++|.|.. +...+++.|.+|++  +|....++.....++|..+
T Consensus        74 Grrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~i  153 (493)
T PRK15462         74 GNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSII  153 (493)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHH
Confidence            689999999999988887666543 2233343333344444543 33456789999986  6888899999999999999


Q ss_pred             HHHhhHHhcccchhHHHHHHhhHHHHHHH
Q 015488           77 EAALAWIVMPILTWRWLLALSAIPAFVLL  105 (406)
Q Consensus        77 ~~~l~~~~~~~~~Wr~~f~i~~ip~~~~~  105 (406)
                      +|.+...+.+..|||+.|.+.++..++..
T Consensus       154 ap~l~g~L~~~~Gw~~~F~iaaigm~l~l  182 (493)
T PRK15462        154 APIACGYAQEEYSWAMGFGLAAVGMIAGL  182 (493)
T ss_pred             HHHHHHHHHhhhChHHHHHHHHHHHHHHH
Confidence            99999998888899999998776444433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.11  E-value=6.7e-09  Score=100.08  Aligned_cols=139  Identities=19%  Similarity=0.078  Sum_probs=94.3

Q ss_pred             HHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcch
Q 015488          248 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  327 (406)
Q Consensus       248 ~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~  327 (406)
                      ....++..++.++.|.++||+|||+.+..+.....+.........+...................+..+.+..|.+|++.
T Consensus        55 ~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~  134 (406)
T PRK15402         55 TAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD  134 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH
Confidence            34446677888999999999999999888776666554444333322222111111111112223456677789999999


Q ss_pred             hhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccCC
Q 015488          328 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  386 (406)
Q Consensus       328 R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~  386 (406)
                      |..+.++......++..++|.+.+.+.+..+....+.+.+++++++.+..++..||++.
T Consensus       135 ~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (406)
T PRK15402        135 AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG  193 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            99999999888888888999887777665555566777777777777666666677654

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.09  E-value=1.6e-08  Score=95.42  Aligned_cols=135  Identities=14%  Similarity=0.047  Sum_probs=90.1

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 015488          246 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ-----SNILLTALLSGARMFSMGTFIIANIFAP  320 (406)
Q Consensus       246 ~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (406)
                      ......+...++.+..|.++||+|||+.+..+..+..+.........     +............+......+....+.+
T Consensus        39 ~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  118 (365)
T TIGR00900        39 AALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLP  118 (365)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444566778889999999999999999887666554433322211     2222222222222222333456678899


Q ss_pred             cccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhc
Q 015488          321 EIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI  380 (406)
Q Consensus       321 El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  380 (406)
                      |.+|++.|+.+.|+.+....+|..++|.+.+.+.+..+....+.+.++..+++.+....+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  178 (365)
T TIGR00900       119 DLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSV  178 (365)
T ss_pred             hcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999988877665555555666566555555544444

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.08  E-value=5e-09  Score=103.34  Aligned_cols=140  Identities=14%  Similarity=0.044  Sum_probs=97.5

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcc
Q 015488          247 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  326 (406)
Q Consensus       247 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  326 (406)
                      .....++..++.++.++++||+|||+.+..+.++..+.........+............+......+....+..|.+|++
T Consensus        43 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~  122 (485)
T TIGR00711        43 ITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPE  122 (485)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHH
Confidence            33445677888999999999999999998877766665544433333222222222222223334566778889999999


Q ss_pred             hhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccCC
Q 015488          327 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  386 (406)
Q Consensus       327 ~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~  386 (406)
                      .|+++.++......+|..++|.+.+.+.+..+..+.|.+.+..+++..++..++.||++.
T Consensus       123 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  182 (485)
T TIGR00711       123 KRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKP  182 (485)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccc
Confidence            999999999999999999999998877766555566666666666666666666666543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.08  E-value=1.7e-08  Score=96.73  Aligned_cols=136  Identities=10%  Similarity=0.027  Sum_probs=91.9

Q ss_pred             HHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchh
Q 015488          249 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  328 (406)
Q Consensus       249 ~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R  328 (406)
                      ...+...++....|.+.||+|||+.+..+.....+.........+.......-..........++....+.+|.+|.+.|
T Consensus        52 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r  131 (390)
T PRK03545         52 IYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKK  131 (390)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhh
Confidence            33455667778889999999999999888776665544443333222221111122122222335556778999999999


Q ss_pred             hHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhccccc
Q 015488          329 STGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  384 (406)
Q Consensus       329 ~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et  384 (406)
                      +.+.|+......+|..++|.+.+.+.+..+....|.+.++++++..+......||.
T Consensus       132 ~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~  187 (390)
T PRK03545        132 AQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLL  187 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999998887766655666677777777777666555555554

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.08  E-value=1.3e-09  Score=87.81  Aligned_cols=114  Identities=23%  Similarity=0.336  Sum_probs=96.5

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      +||+.++.+.....++.+...++++++.+.+.+++.|++.+... ....+..|..|+++|++..+..+....+|..+++.
T Consensus        26 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  105 (141)
T TIGR00880        26 GRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPP  105 (141)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHH
Confidence            58899998988888888888888999999999999999887653 45567889999999999999999999999999999


Q ss_pred             hhHHhcccchhHHHHHHhhHHHHHHH-HHHHhccCC
Q 015488           80 LAWIVMPILTWRWLLALSAIPAFVLL-IFIVFMPES  114 (406)
Q Consensus        80 l~~~~~~~~~Wr~~f~i~~ip~~~~~-~~~~~~pES  114 (406)
                      +...+.+..+||+.+.+.++..++.. ...+..||+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880       106 LGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             hHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            99988888899999998877766654 344455654

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.07  E-value=3.9e-07  Score=86.11  Aligned_cols=142  Identities=11%  Similarity=0.085  Sum_probs=91.4

Q ss_pred             HHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchhh
Q 015488          250 TSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRS  329 (406)
Q Consensus       250 ~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~  329 (406)
                      ..+.+.+...+..++.+|+|.|+.++++..+..+=........+.+.....=..-..-.-.......-|.++.+|++..+
T Consensus       268 ~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsA  347 (412)
T PF01306_consen  268 QVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSA  347 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHH
T ss_pred             HHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHH
Confidence            34668888999999999999999988876555543333333333332221111111101112234566889999999999


Q ss_pred             HHHhHHHHhH-hHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccCCccccc
Q 015488          330 TGAGVAYAVG-RIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVN  391 (406)
Q Consensus       330 ~a~g~~~~~~-~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~~~  391 (406)
                      +...+..++. .++.++.+.+.+.+.|..|....|.+++.+.+...++..+..++.|....++
T Consensus       348 t~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~~~~~  410 (412)
T PF01306_consen  348 TLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQIVHP  410 (412)
T ss_dssp             HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSSTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCcccccC
Confidence            9999987664 5777777888898989887667788899888887777777765555544443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.07  E-value=1.2e-08  Score=98.62  Aligned_cols=136  Identities=12%  Similarity=0.049  Sum_probs=93.6

Q ss_pred             HhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchhhH
Q 015488          251 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRST  330 (406)
Q Consensus       251 ~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~  330 (406)
                      .++..++.+..|.++||+|||+.+..+.++..+..+......+.....+.-+..........+..+.+..|.+|.+.|++
T Consensus        61 ~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~  140 (413)
T PRK15403         61 LAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIK  140 (413)
T ss_pred             HHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            46667888999999999999999988776666554444333332222111111111111223445677889999999999


Q ss_pred             HHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccCC
Q 015488          331 GAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  386 (406)
Q Consensus       331 a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~  386 (406)
                      +.++.+....++..++|.+.+.+.+..+....|++.++..+++.+...+..||++.
T Consensus       141 ~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        141 LMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            99999999999999999888766665555567777777777776665555678754

>PRK09848 glucuronide transporter; Provisional

Probab=99.06  E-value=2.5e-07  Score=90.41  Aligned_cols=105  Identities=10%  Similarity=0.003  Sum_probs=65.8

Q ss_pred             hhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh-hh-HHHHHHHHHHHHHhhhhhhhhhhhcccccCc----
Q 015488          252 FAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ-SN-ILLTALLSGARMFSMGTFIIANIFAPEIYPT----  325 (406)
Q Consensus       252 ~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~----  325 (406)
                      +..+++..+.+++.||+|+|+.+..+.++..+....+.... .+ +..........+......+..+...+|..|.    
T Consensus       275 ~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~  354 (448)
T PRK09848        275 VGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYL  354 (448)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence            45667888899999999999998887665554333332221 11 1111111112222233345566676777654    


Q ss_pred             ---chhhHHHhHHHHhHhHHHHHHHHHHHHHhhh
Q 015488          326 ---SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS  356 (406)
Q Consensus       326 ---~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~  356 (406)
                         +.++...|+.+...++|..+++.+.+.+++.
T Consensus       355 ~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~  388 (448)
T PRK09848        355 TGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL  388 (448)
T ss_pred             hCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               3568889999999999999988887766543

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.05  E-value=2e-09  Score=102.10  Aligned_cols=139  Identities=15%  Similarity=0.119  Sum_probs=92.5

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcc
Q 015488          247 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  326 (406)
Q Consensus       247 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  326 (406)
                      .....++..++.++.|+++||+|||+.+..+.++..+..+......+.....+......+......+....+.+|.+|.+
T Consensus        36 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  115 (379)
T TIGR00881        36 LSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRS  115 (379)
T ss_pred             HHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHh
Confidence            34445677788999999999999999998887766665544443333222222222222222334566778889999999


Q ss_pred             hhhHHHhHHHHhHhHHHHHHHH-HHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccC
Q 015488          327 MRSTGAGVAYAVGRIGGMVCPL-VAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  385 (406)
Q Consensus       327 ~R~~a~g~~~~~~~~g~~~~p~-~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  385 (406)
                      .|+.+.|+.+....+|+.++|. +...+.+..+....+.+.++++++..+...++.||++
T Consensus       116 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (379)
T TIGR00881       116 ERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSP  175 (379)
T ss_pred             hheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCc
Confidence            9999999999999999999984 4444444444445666667666666555555555543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.03  E-value=1.7e-08  Score=99.21  Aligned_cols=173  Identities=17%  Similarity=0.098  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhh-hchHHHHHHH
Q 015488          199 LLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDR-VGRKLSMTIM  277 (406)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr-~grR~~~~~~  277 (406)
                      .++...+...+.+|+..-+.+.+..+...        .+..............+...++.+.+|+++|| +|||+.+..+
T Consensus        14 ~l~~~~~~~~~~~~~~~~~L~~yl~~~~~--------lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~   85 (475)
T TIGR00924        14 TLFFVELWERFSYYGMQGILAVYLVQQAG--------LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG   85 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence            44555566777888776655544321100        01111122223334456678899999999999 8999999888


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcc---hhhHHHhHHHHhHhHHHHHHHHHHHHHh
Q 015488          278 FIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS---MRSTGAGVAYAVGRIGGMVCPLVAVGLV  354 (406)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~---~R~~a~g~~~~~~~~g~~~~p~~~~~l~  354 (406)
                      .++.++....+....+...................+......+|.+|++   .|+++.++.+...++|+.++|.+.+++.
T Consensus        86 ~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~  165 (475)
T TIGR00924        86 GIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIA  165 (475)
T ss_pred             HHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHH
Confidence            7766655444433222221111111111222223355567778999875   4899999999999999999999988877


Q ss_pred             hhchhhHHHHHHHHHHHHHHHHHHh
Q 015488          355 TSCHQTAAILLLEALIVLSVVVILL  379 (406)
Q Consensus       355 ~~~~~~~~~~~~~~~~~i~~~~~~~  379 (406)
                      +..+....|.+.++.++++.+...+
T Consensus       166 ~~~g~~~~f~~~~~~~~~~~l~~~~  190 (475)
T TIGR00924       166 ENYGYHVGFNLAAVGMVIGLLTFFA  190 (475)
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHH
Confidence            7655555666656555555444333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.03  E-value=9.7e-09  Score=97.84  Aligned_cols=139  Identities=14%  Similarity=0.101  Sum_probs=96.7

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcc
Q 015488          247 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  326 (406)
Q Consensus       247 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  326 (406)
                      .....++..++.+..|.++||+|||+.+..+.+...+.........+............++.....+....+.+|.+|.+
T Consensus        32 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~  111 (377)
T PRK11102         32 LSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKE  111 (377)
T ss_pred             HHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            33445667788999999999999999998877766665554433332222222222222222333455677889999999


Q ss_pred             hhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccC
Q 015488          327 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  385 (406)
Q Consensus       327 ~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  385 (406)
                      .|+++.++.+....+|..++|.+.+.+.+..+....+.+.+.++++..+...+..||++
T Consensus       112 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (377)
T PRK11102        112 EFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL  170 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence            99999999999999999999998877766555556677777777777666666666654

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.02  E-value=4.4e-08  Score=96.95  Aligned_cols=136  Identities=17%  Similarity=0.062  Sum_probs=90.8

Q ss_pred             HhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccc-Ccchhh
Q 015488          251 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIY-PTSMRS  329 (406)
Q Consensus       251 ~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~-p~~~R~  329 (406)
                      .++...+.+..|+++||+|||+.+..+.++..+..+......+.....+.-....+...+..+.......+.+ |++.|+
T Consensus        51 ~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~  130 (495)
T PRK14995         51 SLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRN  130 (495)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            4555667788999999999999998887776665544443333222222111122222222333444444554 789999


Q ss_pred             HHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccCC
Q 015488          330 TGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  386 (406)
Q Consensus       330 ~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~  386 (406)
                      ++.|+......+|..++|.+.+.+.+..+..+.|.+...++++..++..++.||.++
T Consensus       131 ~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~  187 (495)
T PRK14995        131 MALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAG  187 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            999999999999999999998888776666667777676777776666666666543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.01  E-value=2.8e-08  Score=97.20  Aligned_cols=138  Identities=14%  Similarity=0.042  Sum_probs=84.7

Q ss_pred             HHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 015488          248 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ----SNILLTALLSGARMFSMGTFIIANIFAPEIY  323 (406)
Q Consensus       248 ~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~  323 (406)
                      ....+...++.++.|+++||+|||+.+..+.++.++.........    +............++....++.......|.+
T Consensus        70 ~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~  149 (452)
T PRK11273         70 SGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW  149 (452)
T ss_pred             HHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhC
Confidence            344566788999999999999999999888776665544433211    1111112112222222223344455678999


Q ss_pred             CcchhhHHHhHHHHhHhHHHH-HHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccC
Q 015488          324 PTSMRSTGAGVAYAVGRIGGM-VCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  385 (406)
Q Consensus       324 p~~~R~~a~g~~~~~~~~g~~-~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  385 (406)
                      |++.|+++.|+.+....+|+. .+|.+...+....+....+++.++.+++..++..++.||+.
T Consensus       150 ~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~  212 (452)
T PRK11273        150 SQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTP  212 (452)
T ss_pred             ChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence            999999999998888888764 45544322222224445677777766666556556555653

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.99  E-value=4.3e-08  Score=92.88  Aligned_cols=108  Identities=21%  Similarity=0.254  Sum_probs=72.4

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhhhhhhhhhhhcccccCc
Q 015488          247 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ-SNILLTALLSGARMFSMGTFIIANIFAPEIYPT  325 (406)
Q Consensus       247 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~  325 (406)
                      .....++..++.++.|.++||+|||+.+..+.++..+......... +.............. .+.+.....+.+|.+|+
T Consensus        43 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~  121 (366)
T TIGR00886        43 VAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIA-GGSFASCMPWISFFFPK  121 (366)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-chhhHhHHHHHHHhcCH
Confidence            3444567788999999999999999999887776666544433323 222221111111111 23344456778899999


Q ss_pred             chhhHHHhHHHHhHhHHHHHHHHHHHHHhh
Q 015488          326 SMRSTGAGVAYAVGRIGGMVCPLVAVGLVT  355 (406)
Q Consensus       326 ~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~  355 (406)
                      +.|+.+.++......+|..+++.+.+.+..
T Consensus       122 ~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  151 (366)
T TIGR00886       122 KIQGTALGLAAGWGNMGGGVAQFVMPPIIG  151 (366)
T ss_pred             hhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            999999999998888887777777655443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.98  E-value=2.9e-08  Score=94.91  Aligned_cols=139  Identities=11%  Similarity=0.038  Sum_probs=93.7

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcc
Q 015488          247 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  326 (406)
Q Consensus       247 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  326 (406)
                      .....++..++.++.|++.||+|||+.+..+..+.++.........+.+.....-....+......+....+..|.+|++
T Consensus        44 ~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~  123 (382)
T PRK10091         44 ISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPG  123 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChH
Confidence            34445778889999999999999999998887777665554443333222222212222222222344556778999999


Q ss_pred             hhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccC
Q 015488          327 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  385 (406)
Q Consensus       327 ~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  385 (406)
                      .|+.+.++......++..++|.+.+.+.+..+....|.+.+..+++..+...+..||.+
T Consensus       124 ~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~  182 (382)
T PRK10091        124 KVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR  182 (382)
T ss_pred             HhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            99999999888888888888888776666555556677777766666655555566754

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.98  E-value=2.2e-08  Score=97.51  Aligned_cols=140  Identities=16%  Similarity=0.099  Sum_probs=89.7

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh---hhH-HHHHHHHHHHHHhhhhhhhhhhhccc
Q 015488          246 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ---SNI-LLTALLSGARMFSMGTFIIANIFAPE  321 (406)
Q Consensus       246 ~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~E  321 (406)
                      ......++..++.+..|+++||+|||+.+..+.++.++.........   +.. ..........++....++.......|
T Consensus        66 ~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~  145 (438)
T TIGR00712        66 ALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVH  145 (438)
T ss_pred             HHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence            33444567788999999999999999988877666655544332211   111 11111111122222233445566789


Q ss_pred             ccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhh-chhhHHHHHHHHHHHHHHHHHHhcccccC
Q 015488          322 IYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS-CHQTAAILLLEALIVLSVVVILLIPFETK  385 (406)
Q Consensus       322 l~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~et~  385 (406)
                      .+|++.|+++.|+.+....+++.++|.+.+.+.+. .+....|.+.++++++..+...++.||++
T Consensus       146 ~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~  210 (438)
T TIGR00712       146 WWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTP  210 (438)
T ss_pred             hcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence            99999999999999999889888887766544443 34445677777777776666666656643

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.98  E-value=6.3e-08  Score=92.90  Aligned_cols=140  Identities=16%  Similarity=0.035  Sum_probs=89.0

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcc
Q 015488          247 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  326 (406)
Q Consensus       247 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  326 (406)
                      .....+...++.++.|.++||+|||+.+..+.+...+.........+............+......+....+..|.+|.+
T Consensus        49 ~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  128 (394)
T PRK11652         49 MAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGT  128 (394)
T ss_pred             HHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHH
Confidence            33445667788999999999999999988876665554443333222221111111111111122344556778999999


Q ss_pred             hhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccCC
Q 015488          327 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  386 (406)
Q Consensus       327 ~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~  386 (406)
                      .|+.+.++.+....++..++|.+.+.+.+..+....+.+.++..++..+...++.||++.
T Consensus       129 ~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  188 (394)
T PRK11652        129 QLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP  188 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence            999999998888888888889888766665555556666666666555555555667543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.96  E-value=1.3e-08  Score=94.29  Aligned_cols=143  Identities=17%  Similarity=0.109  Sum_probs=111.4

Q ss_pred             hhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 015488          242 SVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPE  321 (406)
Q Consensus       242 ~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E  321 (406)
                      +.....-..++..-++-.+.|.++||.+.|..+..++++++++.+.+.+..+.....++......+....++...-..+.
T Consensus        65 ~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~  144 (448)
T COG2271          65 QLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITH  144 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            33344444556778899999999999999999999999999998888776655555555555555555556777888889


Q ss_pred             ccCcchhhHHHhHHHHhHhHHHHHHHHHH--HHHhhhchhhHHHHHHHHHHHHHHHHHHhccccc
Q 015488          322 IYPTSMRSTGAGVAYAVGRIGGMVCPLVA--VGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  384 (406)
Q Consensus       322 l~p~~~R~~a~g~~~~~~~~g~~~~p~~~--~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et  384 (406)
                      -||++.|++..++=+...++|+.+.|.+.  ..+....+....|++-++++++.+++.++..+||
T Consensus       145 Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~  209 (448)
T COG2271         145 WFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR  209 (448)
T ss_pred             HcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999998888777  6555544555678888888888888888776443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.96  E-value=4.6e-08  Score=92.86  Aligned_cols=136  Identities=13%  Similarity=-0.009  Sum_probs=88.0

Q ss_pred             HHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchh
Q 015488          249 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  328 (406)
Q Consensus       249 ~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R  328 (406)
                      ...++..++.+..|+++||+|||+.+..................+.......-+.... ..+.........+|.+|++.|
T Consensus        34 ~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~-g~~~~~~~~~~~~~~~~~~~r  112 (368)
T TIGR00903        34 TYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAAL-GQPFLLNAFAPAASQIREERR  112 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh-HhHHHHHHHHHHHHHcCHHHH
Confidence            3346677889999999999999987655433332222111111111111111111111 122233445555899999999


Q ss_pred             hHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccC
Q 015488          329 STGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  385 (406)
Q Consensus       329 ~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  385 (406)
                      +++.++......+|+.+++.+.+.+.+..+....|++.+++.++..+..+++.||.+
T Consensus       113 ~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p  169 (368)
T TIGR00903       113 DLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP  169 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999988887776666666777778887777777777777754

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.95  E-value=6e-08  Score=84.92  Aligned_cols=125  Identities=12%  Similarity=0.046  Sum_probs=77.1

Q ss_pred             hhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH-HHHh-hhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchhhH
Q 015488          253 AELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLL-PLVT-LQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRST  330 (406)
Q Consensus       253 ~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~  330 (406)
                      .+.+.+.+.|.++||.||+..++.+..+..+..= .+.+ ..+++....+  .+... ...-...|-..+.+.|.+.-++
T Consensus       312 Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy~~m~~--lGLsy-sllAcslWP~va~~vpE~qLGT  388 (459)
T KOG4686|consen  312 ISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLSPYTSMTF--LGLSY-SLLACSLWPCVASLVPEEQLGT  388 (459)
T ss_pred             hhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhccHHHHHHH--HhhhH-HHHHHHHhhhhhhhCCHHHhcc
Confidence            3455667889999999999988776544333211 1111 1223322222  11111 1111335667778889999999


Q ss_pred             HHhHHHHhHhHHHHHHHHHHHHHhhhchhh----HHHHHHHHHHHHHHHHHHhc
Q 015488          331 GAGVAYAVGRIGGMVCPLVAVGLVTSCHQT----AAILLLEALIVLSVVVILLI  380 (406)
Q Consensus       331 a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~----~~~~~~~~~~~i~~~~~~~~  380 (406)
                      |.|++.++-++|-.+.|.+.+.+.+..+++    ..|+.++..++++..+.+.+
T Consensus       389 aygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~  442 (459)
T KOG4686|consen  389 AYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL  442 (459)
T ss_pred             hHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence            999999999999888999988766643322    22445566666666555544

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.95  E-value=4.1e-08  Score=93.08  Aligned_cols=138  Identities=14%  Similarity=0.071  Sum_probs=86.6

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccC
Q 015488          245 INVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYP  324 (406)
Q Consensus       245 ~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p  324 (406)
                      .......++..++.+..|.++||+|||+.+..+.++..+..+......+............+.....+........|.+|
T Consensus        42 ~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  121 (377)
T TIGR00890        42 IWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP  121 (377)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC
Confidence            33444556778899999999999999999988777666655444333322222111112112222223344455677777


Q ss_pred             cchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccc
Q 015488          325 TSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFE  383 (406)
Q Consensus       325 ~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e  383 (406)
                       +.|+.+.++......+|..+++.+...+.+..+....+.+.++.+++..+..+++.+|
T Consensus       122 -~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  179 (377)
T TIGR00890       122 -DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGY  179 (377)
T ss_pred             -cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheec
Confidence             4699999999888888877665555555554455566777777777776666655443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.95  E-value=7.9e-08  Score=92.56  Aligned_cols=135  Identities=19%  Similarity=0.125  Sum_probs=90.3

Q ss_pred             HHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchh
Q 015488          249 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  328 (406)
Q Consensus       249 ~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R  328 (406)
                      +..+...++..+.|.++||+|||+.+..+.+...+..+......+............+ ..+..+....+..|.+|++.|
T Consensus        62 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~  140 (408)
T PRK09874         62 ITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGL-LGGFVPNANALIATQVPRNKS  140 (408)
T ss_pred             HHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hhhhHHhHHHHHHHhcCHhhh
Confidence            3345667788899999999999999888766655544433332222211111111111 123344455667889999999


Q ss_pred             hHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhccccc
Q 015488          329 STGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  384 (406)
Q Consensus       329 ~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et  384 (406)
                      +.+.|+.+....+|..++|.+.+.+.+..+....+.+.+++.+++.+...++.||.
T Consensus       141 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        141 GWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIREN  196 (408)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            99999999998999999999888776655555667777777777766666655554

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.94  E-value=1e-07  Score=88.98  Aligned_cols=324  Identities=15%  Similarity=0.166  Sum_probs=175.8

Q ss_pred             chhhHHHHHHHHHHHHHHhhccc------HH--HHHHHHHHhhccCCcchhhHHHH-HhhcCCCcchhHHHHHHHHHHHH
Q 015488            3 EGSILGGALVTFVAGLLSAFSPN------YI--SLLILRGLAGAGLGSGHVFFSWF-MEFVPPSNRGKWMVVFSTFWTFG   73 (406)
Q Consensus         3 r~~~~~~~~~~~i~~~~~~~a~~------~~--~l~~~R~l~G~g~g~~~~~~~~~-~E~~p~~~Rg~~~~~~~~~~~~G   73 (406)
                      |.+++++..+..+++.+-..+..      +.  ..+.+..+.+.+.-..-...+-+ .-|+|+++|..+...-..+.++|
T Consensus       109 R~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LG  188 (480)
T KOG2563|consen  109 RTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLG  188 (480)
T ss_pred             HHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHH
Confidence            55667777777777765554432      22  34455544444322111222223 35789999999998888888888


Q ss_pred             HHHHHHhhHHhcc------cchhHHH--HHHh-hHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCC
Q 015488           74 SVSEAALAWIVMP------ILTWRWL--LALS-AIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPS  144 (406)
Q Consensus        74 ~~l~~~l~~~~~~------~~~Wr~~--f~i~-~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~  144 (406)
                      ..++.++.-.+.+      ...|-..  |+.. .+-.+++.+..+..+|.|+.--+                        
T Consensus       189 vavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps------------------------  244 (480)
T KOG2563|consen  189 VAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPS------------------------  244 (480)
T ss_pred             HHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc------------------------
Confidence            8888877766543      3357663  4422 22222233333344444431100                        


Q ss_pred             CCCcCCCCCCcccccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhc
Q 015488          145 GNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLAS-ELSG  223 (406)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~  223 (406)
                           .     .+.  .+++.              +-.++.+.+++.   ++.+++.+.+..+...+|+++.... .+..
T Consensus       245 -----~-----s~~--~~~~~--------------~f~~si~~~~~n---~~F~il~~~ygi~~g~F~~l~~~l~~~l~~  295 (480)
T KOG2563|consen  245 -----A-----SQA--ALQDA--------------SFPKSIKSCFKN---RQFIILAICYGIGLGLFNSLSTLLNLALCP  295 (480)
T ss_pred             -----h-----hHh--hhhcC--------------cHHHHHHHHHcC---ccHHHHHHHHhhhHHHHHHHHHHhhhcccc
Confidence                 0     000  00000              011123333332   1344555566666666676655433 2211


Q ss_pred             cCCCCCcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhch-HHHHHHHHHHHHHHHHHHHh----hhhhHHHH
Q 015488          224 SQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGR-KLSMTIMFIFVCIFLLPLVT----LQSNILLT  298 (406)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gr-R~~~~~~~~~~~~~~~~~~~----~~~~~~~~  298 (406)
                                  .+...........+..+++++|+++.|.+.||.+. |....+......+..+.+..    ....+...
T Consensus       296 ------------sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~  363 (480)
T KOG2563|consen  296 ------------SGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVF  363 (480)
T ss_pred             ------------ccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehh
Confidence                        01111112233455567889999999999999844 44444443433333221111    11122222


Q ss_pred             HHHHHHHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhch----hhHHHHHHHHHHHHHH
Q 015488          299 ALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH----QTAAILLLEALIVLSV  374 (406)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~----~~~~~~~~~~~~~i~~  374 (406)
                      ..+....++..+..++..-...|.-=+..=++..|+.+..+.+-+++-.++.+.+.+..+    .+..-+.+...++...
T Consensus       364 ~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~  443 (480)
T KOG2563|consen  364 TTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGA  443 (480)
T ss_pred             hhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHH
Confidence            223333344556667777777887555566888999999999988887787776665544    3333456667777777


Q ss_pred             HHHHhcccccCCccccc
Q 015488          375 VVILLIPFETKGKELVN  391 (406)
Q Consensus       375 ~~~~~~~~et~~~~~~~  391 (406)
                      .+..+++|+-|.++.++
T Consensus       444 ~lva~~r~~y~R~~~e~  460 (480)
T KOG2563|consen  444 ILVAFFRPDYRRLRAEA  460 (480)
T ss_pred             HHHhhhhhhHHhHhhhh
Confidence            78888888877666554

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.94  E-value=9.6e-08  Score=94.75  Aligned_cols=108  Identities=19%  Similarity=0.139  Sum_probs=74.7

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHhhhhhhhhhhhc
Q 015488          246 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQS------NILLTALLSGARMFSMGTFIIANIFA  319 (406)
Q Consensus       246 ~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (406)
                      ......++.+++.++.+++.||+|||+.+..+.++..+..+......+      .....+.-+...+...+.++....+.
T Consensus        61 ~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~  140 (502)
T TIGR00887        61 VNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIIT  140 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            344455778899999999999999999988776665554443332211      11111222222233344457788999


Q ss_pred             ccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHH
Q 015488          320 PEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGL  353 (406)
Q Consensus       320 ~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l  353 (406)
                      +|.+|++.|+++.++.+....+|..+++.+...+
T Consensus       141 ~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~  174 (502)
T TIGR00887       141 SEFATKKWRGAMMAAVFAMQGFGILAGAIVALIV  174 (502)
T ss_pred             HHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888888887765433

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.93  E-value=1.2e-07  Score=91.25  Aligned_cols=133  Identities=11%  Similarity=-0.020  Sum_probs=89.0

Q ss_pred             HhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchhhH
Q 015488          251 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRST  330 (406)
Q Consensus       251 ~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~  330 (406)
                      .+......+++|.++||+|||+.+..+.....+.........+.+..........+......+....+..|.+|++.|++
T Consensus        56 ~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~  135 (400)
T PRK11646         56 QFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGR  135 (400)
T ss_pred             HHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            34455567889999999999999988877766655544433332222222122222222223445677889999999999


Q ss_pred             HHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhccccc
Q 015488          331 GAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  384 (406)
Q Consensus       331 a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et  384 (406)
                      +.|+.+....+|..++|.+.+.+. ..+....+.+.++.+++.+++..++.||.
T Consensus       136 a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~  188 (400)
T PRK11646        136 FFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAY  188 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            999999999999999999988776 44555666666666666655544555553

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.92  E-value=3.2e-07  Score=88.55  Aligned_cols=141  Identities=11%  Similarity=0.071  Sum_probs=88.2

Q ss_pred             hHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHhhhhhhhhhh
Q 015488          243 VYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL-----QSNILLTALLSGARMFSMGTFIIANI  317 (406)
Q Consensus       243 ~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (406)
                      ......+..+.+.++.+..|++.||+|.|+.+..+..+.++..+.....     .+.......-....+ ..+.++....
T Consensus        72 ~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gi-gg~~f~~~~~  150 (462)
T PRK15034         72 LFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGF-AGANFASSMG  150 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHH-HHHhHHHHHH
Confidence            3334444556667777888999999999999888777766555443332     111111111111111 2334556667


Q ss_pred             hcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHh-----hhc-------------hhhHHHHHHHHHHHHHHHHHHh
Q 015488          318 FAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV-----TSC-------------HQTAAILLLEALIVLSVVVILL  379 (406)
Q Consensus       318 ~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~-----~~~-------------~~~~~~~~~~~~~~i~~~~~~~  379 (406)
                      ..++.||++.|+++.|+....+++|..+.+++.+.+.     ...             +.....++++...++.+++.++
T Consensus       151 ~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~  230 (462)
T PRK15034        151 NISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWS  230 (462)
T ss_pred             HHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7889999999999999998888888877766665433     111             1223445677777777666666


Q ss_pred             ccccc
Q 015488          380 IPFET  384 (406)
Q Consensus       380 ~~~et  384 (406)
                      +.++.
T Consensus       231 ~~~~~  235 (462)
T PRK15034        231 GMNDI  235 (462)
T ss_pred             hCCCc
Confidence            65443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.92  E-value=6.1e-08  Score=95.42  Aligned_cols=174  Identities=12%  Similarity=0.072  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhh-hchHHHH
Q 015488          196 TTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDR-VGRKLSM  274 (406)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr-~grR~~~  274 (406)
                      ....++...+...+.||+..-+.+.+..+.          .+.....................+++|+++|| +|||+.+
T Consensus        15 ~~~~~~~~~~~er~~~y~~~~~l~~yl~~~----------lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~   84 (489)
T PRK10207         15 PFFMIFFVELWERFGYYGVQGILAVFFVKQ----------LGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTI   84 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------cCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHH
Confidence            334444555566778887765444332110          01111111111111222334445689999999 9999999


Q ss_pred             HHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHhhhhhhhhhhhcccccCcc--hhhHHHhHHHHhHhHHHHHHHHHHH
Q 015488          275 TIMFIFVCIFLLPLVTLQS-NILLTALLSGARMFSMGTFIIANIFAPEIYPTS--MRSTGAGVAYAVGRIGGMVCPLVAV  351 (406)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~--~R~~a~g~~~~~~~~g~~~~p~~~~  351 (406)
                      ..+.++..+.........+ ...................+......+|.||++  .|..+.++.+...++|+.++|.+.+
T Consensus        85 ~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g  164 (489)
T PRK10207         85 VLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAP  164 (489)
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHH
Confidence            9987777665544443222 111111111122222223345567889999987  4588899999999999999999988


Q ss_pred             HHhhhchhhHHHHHHHHHHHHHHHHHHhc
Q 015488          352 GLVTSCHQTAAILLLEALIVLSVVVILLI  380 (406)
Q Consensus       352 ~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  380 (406)
                      ++.+..+.+..|.+.++ +++..++.+.+
T Consensus       165 ~l~~~~gw~~~F~i~~i-~~~~~~~~~~~  192 (489)
T PRK10207        165 VIADKFGYSVTYNLCGA-GLIIALLVYFA  192 (489)
T ss_pred             HHHHhhChHHHHHHHHH-HHHHHHHHHHH
Confidence            88776665555555433 33333333333

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.90  E-value=8.6e-08  Score=89.79  Aligned_cols=133  Identities=23%  Similarity=0.195  Sum_probs=91.5

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcc
Q 015488          247 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  326 (406)
Q Consensus       247 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  326 (406)
                      .....+...++.+..|.++||+|||+.+..+.+...+.........+...................+....+..|.+|++
T Consensus        40 ~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~  119 (352)
T cd06174          40 VSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK  119 (352)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCcc
Confidence            34445677889999999999999999888877776665554443332222222222222222333466778899999999


Q ss_pred             hhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHh
Q 015488          327 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILL  379 (406)
Q Consensus       327 ~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  379 (406)
                      .|+++.++.+....+|+.++|.+.+.+.+..+....+.+.+...+++.+...+
T Consensus       120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (352)
T cd06174         120 ERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLF  172 (352)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999887776555455566666666555554443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11043 putative transporter; Provisional

Probab=98.89  E-value=2e-07  Score=89.61  Aligned_cols=138  Identities=17%  Similarity=0.104  Sum_probs=90.4

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcc
Q 015488          247 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  326 (406)
Q Consensus       247 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  326 (406)
                      ..+..+...++.++.|+++||+|||+.+..+..+..+.........+............+...........+..|.+|.+
T Consensus        47 ~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~  126 (401)
T PRK11043         47 LSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQ  126 (401)
T ss_pred             HHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcH
Confidence            33445667889999999999999999998876665554443333222221111111111111122233455678999999


Q ss_pred             hhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhccccc
Q 015488          327 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  384 (406)
Q Consensus       327 ~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et  384 (406)
                      .|....+..+....+++.++|.+.+.+.+..+....+.+.+.+.++..+...+++++.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (401)
T PRK11043        127 KANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSK  184 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            9999999988888889999999888777666655667777777776666665565443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.86  E-value=2.9e-07  Score=88.31  Aligned_cols=134  Identities=10%  Similarity=-0.045  Sum_probs=87.0

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcc
Q 015488          247 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  326 (406)
Q Consensus       247 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  326 (406)
                      .....+...+..+++|.++||+|||+++..+.++..+....+....+.  . ..-...........+....+.+|++|.+
T Consensus        44 ~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~--~-~~r~l~G~~~a~~~pa~~a~i~~~~~~~  120 (393)
T PRK11195         44 QMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP--L-LAYGLVGIGAAAYSPAKYGILTELLPGE  120 (393)
T ss_pred             HHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence            334446677888999999999999999988876665443332222221  1 1112222333344567788899999999


Q ss_pred             hhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccC
Q 015488          327 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  385 (406)
Q Consensus       327 ~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  385 (406)
                      .|+++.|+.......+..++|.+.+.+.+.. ...++.+.+.+.+++.+ ..+..||.+
T Consensus       121 ~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~~~-~~~~l~~~~  177 (393)
T PRK11195        121 KLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLAAL-FNLFIPRLG  177 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHhcCCCCc
Confidence            9999999999999899999999988776642 22333333333344433 334455644

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.84  E-value=1.7e-07  Score=90.74  Aligned_cols=138  Identities=15%  Similarity=0.109  Sum_probs=87.2

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH---h-hhhh-HHHHHHHHHHHHHhhhhhhhhhhhcc
Q 015488          246 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV---T-LQSN-ILLTALLSGARMFSMGTFIIANIFAP  320 (406)
Q Consensus       246 ~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~---~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (406)
                      ......+...++.+..|.++||+|||+.+..+..+.++....+.   . ..+. ...........++.....+....+.+
T Consensus        57 ~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~  136 (417)
T PRK10489         57 SVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATP  136 (417)
T ss_pred             HHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            33444567788899999999999999988776555444332221   1 1111 11111111111211222344566788


Q ss_pred             cccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhccccc
Q 015488          321 EIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  384 (406)
Q Consensus       321 El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et  384 (406)
                      |.+|++.|+++.++.+....+|..++|.+.+.+.+..+..+.+.+.+...+++.+....+ ||+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~  199 (417)
T PRK10489        137 ALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRL-PAL  199 (417)
T ss_pred             hccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC-CCC
Confidence            999999999999999999999999999988877665555555666556656555554444 454

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.84  E-value=7e-08  Score=94.54  Aligned_cols=139  Identities=19%  Similarity=0.079  Sum_probs=87.5

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhh--h-HHHHHHHHHHHHHhhhhhhhhhhhcccc
Q 015488          246 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQS--N-ILLTALLSGARMFSMGTFIIANIFAPEI  322 (406)
Q Consensus       246 ~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~El  322 (406)
                      ......++..++.++.|+++||+|||+.++.+.++..+..+.......  . ......-....+......+....+.+|.
T Consensus        76 ~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~  155 (481)
T TIGR00879        76 VVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEI  155 (481)
T ss_pred             HHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHcc
Confidence            344455777889999999999999999998876665554443322111  1 1111111122222233445677888999


Q ss_pred             cCcchhhHHHhHHHHhHhHHHHHHHHHH---HHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccC
Q 015488          323 YPTSMRSTGAGVAYAVGRIGGMVCPLVA---VGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  385 (406)
Q Consensus       323 ~p~~~R~~a~g~~~~~~~~g~~~~p~~~---~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  385 (406)
                      +|++.|+.+.++.+....+|..++|.+.   ..+.+..+....+.+.+...++..+ ..++.||+.
T Consensus       156 ~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~-~~~~l~~~~  220 (481)
T TIGR00879       156 APKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFL-GLFFLPESP  220 (481)
T ss_pred             CChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHH-HHhcCCCCh
Confidence            9999999999999999999999998876   3222333444555554444444443 344456653

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.83  E-value=1e-07  Score=93.61  Aligned_cols=136  Identities=10%  Similarity=0.021  Sum_probs=94.9

Q ss_pred             HHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcc
Q 015488          249 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ--SNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  326 (406)
Q Consensus       249 ~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  326 (406)
                      ...++..++.+.+|+++||+|||+.+..+.++.++.........  +.......-+...+.....++....+.+|.+|++
T Consensus        84 ~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~  163 (465)
T TIGR00894        84 SHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPK  163 (465)
T ss_pred             HHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHH
Confidence            33467788999999999999999999887776665544332211  1111111112222233344566778899999999


Q ss_pred             hhhHHHhHHHHhHhHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHHHHHHHHhccccc
Q 015488          327 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC-HQTAAILLLEALIVLSVVVILLIPFET  384 (406)
Q Consensus       327 ~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~et  384 (406)
                      .|+++.|+......+|..++|.+.+.+.+.. +....|.+.++..++..++.+++++|.
T Consensus       164 ~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~  222 (465)
T TIGR00894       164 ERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADD  222 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999888777653 555677777777777766666665553

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.82  E-value=2.9e-07  Score=91.04  Aligned_cols=117  Identities=13%  Similarity=0.031  Sum_probs=73.0

Q ss_pred             HHHHHHHHhh-hchHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHhhhhhhhhhhhcccccCcch--hhHHHh
Q 015488          258 LLTAALLVDR-VGRKLSMTIMFIFVCIFLLPLVTLQSN-ILLTALLSGARMFSMGTFIIANIFAPEIYPTSM--RSTGAG  333 (406)
Q Consensus       258 ~~~~~~l~dr-~grR~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~--R~~a~g  333 (406)
                      ..++|+++|| +|||+.+..+.++..+....+....+. ..................+....+.+|.||.+.  |..+.+
T Consensus        74 ~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~  153 (500)
T PRK09584         74 VAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFT  153 (500)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcch
Confidence            4578999999 599999988776665544333332211 111111111112112223445677899998643  456788


Q ss_pred             HHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHH
Q 015488          334 VAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSV  374 (406)
Q Consensus       334 ~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~  374 (406)
                      +.+...++|+.++|.+.+++.+..+....|.+.++..+++.
T Consensus       154 ~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~  194 (500)
T PRK09584        154 MYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITV  194 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            88999999999999999988776665556665554444443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.82  E-value=2.7e-07  Score=90.38  Aligned_cols=130  Identities=15%  Similarity=0.021  Sum_probs=84.1

Q ss_pred             hhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHhhhhhhhhhhhcccccCcchhhH
Q 015488          252 FAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALL-SGARMFSMGTFIIANIFAPEIYPTSMRST  330 (406)
Q Consensus       252 ~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~El~p~~~R~~  330 (406)
                      +...++..+.|+++||+|||+.++.+.++.++..+......+........ ....+.....+.....+..|.+| +.|++
T Consensus        65 ~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~  143 (455)
T TIGR00892        65 AVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPL  143 (455)
T ss_pred             HHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHH
Confidence            44566778899999999999998887666555444333322211111111 11111111112344556678886 78999


Q ss_pred             HHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhccc
Q 015488          331 GAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPF  382 (406)
Q Consensus       331 a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  382 (406)
                      +.|+.+....+|+.++|.+.+.+.+..+....|.+.+++++++.+...++.+
T Consensus       144 a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~  195 (455)
T TIGR00892       144 ANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRP  195 (455)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999888887777666667788888777766555555543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.80  E-value=1.7e-07  Score=92.38  Aligned_cols=138  Identities=15%  Similarity=0.052  Sum_probs=85.7

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh--------hhhHHHHHHH----HHHHHHhhhhhhh
Q 015488          247 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL--------QSNILLTALL----SGARMFSMGTFII  314 (406)
Q Consensus       247 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~----~~~~~~~~~~~~~  314 (406)
                      .....++..++.++.|+++||+|||+.+..+..+..+..+.....        ..+......+    ....+...+..+.
T Consensus        61 ~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~  140 (479)
T PRK10077         61 VASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASML  140 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhH
Confidence            344457778899999999999999999988766655443322210        0111111111    1122223344566


Q ss_pred             hhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHh--------hhchhhHHHHHHHHHHHHHHHHHHhcccccC
Q 015488          315 ANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV--------TSCHQTAAILLLEALIVLSVVVILLIPFETK  385 (406)
Q Consensus       315 ~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~--------~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  385 (406)
                      ...+.+|.+|++.|+.+.|+......+|..+++.+...+.        +..+....+++.++..++..+. .++.||+.
T Consensus       141 ~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~  218 (479)
T PRK10077        141 SPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVPETP  218 (479)
T ss_pred             HHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCCCCc
Confidence            7788999999999999999998888888888776544332        1223445566655665555444 44556764

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.79  E-value=7.6e-07  Score=86.58  Aligned_cols=134  Identities=20%  Similarity=0.121  Sum_probs=79.7

Q ss_pred             HhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhh----H----HHHHHHHHHHHHhhhhhhhhhhhcccc
Q 015488          251 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSN----I----LLTALLSGARMFSMGTFIIANIFAPEI  322 (406)
Q Consensus       251 ~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~El  322 (406)
                      .++..+|.+++|+++||+|||+.+..+.+..++.........+.    .    .....=+...+...+.++....+.+|.
T Consensus        73 ~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~  152 (432)
T PRK10406         73 FLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEV  152 (432)
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHh
Confidence            34556899999999999999999988877776655544322111    0    111111122222334456778899999


Q ss_pred             cCcchhhHHHhHHHHhHhHHHHHHHHHHHHHh--------hhchhhHHHHHHHHHHHHHHHHHHhcccccC
Q 015488          323 YPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV--------TSCHQTAAILLLEALIVLSVVVILLIPFETK  385 (406)
Q Consensus       323 ~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~--------~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  385 (406)
                      +|++.|+.+.++.......|..+++.+...+.        ...+....|.+-++..++.. +.....||++
T Consensus       153 ~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~-~~~~~~~e~~  222 (432)
T PRK10406        153 AVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVAL-WLRRQLDETS  222 (432)
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHH-HHHhcCCCCc
Confidence            99999999988876665566666655433221        12344455655444444432 2233345653

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.79  E-value=1.1e-07  Score=93.57  Aligned_cols=134  Identities=16%  Similarity=0.043  Sum_probs=85.8

Q ss_pred             HHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh-----hhhhHHHHHHHHHHHHHhhhhhhhhhhhcccc
Q 015488          248 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT-----LQSNILLTALLSGARMFSMGTFIIANIFAPEI  322 (406)
Q Consensus       248 ~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El  322 (406)
                      ....++..++.+.+|+++||+|||+.+..+.++.++.......     ..+.......-....++....++....+.+|.
T Consensus        71 s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~  150 (467)
T PRK09556         71 LGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRW  150 (467)
T ss_pred             HHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            3345667788999999999999999988877666654443322     11211121111122222233345667788999


Q ss_pred             cCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhc---hhhHHHHHHHHHHHHHHHHHHhcc
Q 015488          323 YPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC---HQTAAILLLEALIVLSVVVILLIP  381 (406)
Q Consensus       323 ~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~---~~~~~~~~~~~~~~i~~~~~~~~~  381 (406)
                      +|++.|+++.|+....+.+|+.+++.+...+....   +....+.+.++..++.++..+++.
T Consensus       151 ~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~  212 (467)
T PRK09556        151 TPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYG  212 (467)
T ss_pred             cCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999988887765544432   122345555666655555555543

>PRK15075 citrate-proton symporter; Provisional

Probab=98.78  E-value=6.5e-07  Score=87.11  Aligned_cols=99  Identities=11%  Similarity=0.047  Sum_probs=64.6

Q ss_pred             hhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHHHHhhhhhhhhhhhcccccCc
Q 015488          254 ELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNIL--------LTALLSGARMFSMGTFIIANIFAPEIYPT  325 (406)
Q Consensus       254 ~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~El~p~  325 (406)
                      ..+|.++.|++.||+|||+.++.+..+.++.........+...        ..+.-+...+......+....+.+|.+|+
T Consensus        69 ~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~  148 (434)
T PRK15075         69 RPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATP  148 (434)
T ss_pred             hhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCc
Confidence            3468889999999999999998887766655444433222111        01111111111122244556789999999


Q ss_pred             chhhHHHhHHHHhHhHHHHHHHHHHHH
Q 015488          326 SMRSTGAGVAYAVGRIGGMVCPLVAVG  352 (406)
Q Consensus       326 ~~R~~a~g~~~~~~~~g~~~~p~~~~~  352 (406)
                      +.|+.+.++.....++|..+++.+.+.
T Consensus       149 ~~rg~~~~~~~~~~~~g~~~g~~~g~~  175 (434)
T PRK15075        149 GRKGFYTSWQSASQQVAVVFAALLGYL  175 (434)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988887777666665443

>TIGR00898 2A0119 cation transport protein

Probab=98.77  E-value=1.3e-07  Score=93.93  Aligned_cols=134  Identities=16%  Similarity=0.098  Sum_probs=90.1

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcc
Q 015488          247 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  326 (406)
Q Consensus       247 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  326 (406)
                      ..+..++.++|.++.|.++||+|||+.+..+.++..+..+......+.....+.-+...+...+..+....+..|.+|.+
T Consensus       133 ~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~  212 (505)
T TIGR00898       133 QSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKK  212 (505)
T ss_pred             HHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChh
Confidence            33445677889999999999999999998887776665554443333222222222233333444677888999999999


Q ss_pred             hhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhccccc
Q 015488          327 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  384 (406)
Q Consensus       327 ~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et  384 (406)
                      .|+.+.++......+|.+++|.+... ...  ....+.+.++.+++..+.. ++.||+
T Consensus       213 ~r~~~~~~~~~~~~~g~~~~~~~~~~-~~~--wr~~~~~~~i~~~~~~~~~-~~~~es  266 (505)
T TIGR00898       213 QRAIVGTLIQVFFSLGLVLLPLVAYF-IPD--WRWLQLAVSLPTFLFFLLS-WFVPES  266 (505)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH-hhH--HHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence            99999999877777788888876543 322  3345666666666665555 445664

>TIGR00897 2A0118 polyol permease family

Probab=98.77  E-value=4.6e-07  Score=87.24  Aligned_cols=112  Identities=12%  Similarity=0.024  Sum_probs=70.7

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH---hhhhhHHH-HHHHHHHHHHhhhhhhhhhhhcccc
Q 015488          247 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV---TLQSNILL-TALLSGARMFSMGTFIIANIFAPEI  322 (406)
Q Consensus       247 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~El  322 (406)
                      .....++..++.++.|.+.||+|||+.+..+..+.++......   ....+... ....................+..|.
T Consensus        54 ~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~  133 (402)
T TIGR00897        54 FTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYN  133 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHh
Confidence            3444567788999999999999999999887766655433221   11111111 1111111111111223344556788


Q ss_pred             cCcchhhHHHhHHHHhHhHHH-HHHHHHHHHHhhhch
Q 015488          323 YPTSMRSTGAGVAYAVGRIGG-MVCPLVAVGLVTSCH  358 (406)
Q Consensus       323 ~p~~~R~~a~g~~~~~~~~g~-~~~p~~~~~l~~~~~  358 (406)
                      +|++.|+++.|+.++...+|. .++|.+.+.+.+..+
T Consensus       134 ~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g  170 (402)
T TIGR00897       134 TKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG  170 (402)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            999999999999999988885 577877766665444

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.75  E-value=1.2e-06  Score=86.56  Aligned_cols=137  Identities=19%  Similarity=0.109  Sum_probs=90.5

Q ss_pred             HHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH---hh--hhhHHHHHHHHHHHHHhhhhhhhhhhhcccc
Q 015488          248 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV---TL--QSNILLTALLSGARMFSMGTFIIANIFAPEI  322 (406)
Q Consensus       248 ~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El  322 (406)
                      ....+-.++-++.+|.+.||+.||++++.+-++..+....+.   ..  .+.+....+.+....+.....+....+.+|+
T Consensus        52 ~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~l  131 (524)
T PF05977_consen   52 AASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPEL  131 (524)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333445566778899999999999999887665544322221   11  1222222222222222223346678889999


Q ss_pred             cCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhccccc
Q 015488          323 YPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  384 (406)
Q Consensus       323 ~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et  384 (406)
                      .|.+....|.++.....++...++|.+.+.++...+....|.+-+++.++..+....+.++.
T Consensus       132 V~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~  193 (524)
T PF05977_consen  132 VPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPP  193 (524)
T ss_pred             ccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence            99999999999999999999999999988777766665666666666666555555554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.75  E-value=1e-06  Score=84.94  Aligned_cols=110  Identities=13%  Similarity=0.012  Sum_probs=73.8

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 015488          245 INVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL---QSNILLTALLSGARMFSMGTFIIANIFAPE  321 (406)
Q Consensus       245 ~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E  321 (406)
                      .......++..++++..+++.||+|||+.+..+..+.++........   .+........+..........+....+..|
T Consensus        42 ~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~  121 (410)
T TIGR00885        42 LVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILV  121 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHH
Confidence            34445557788899999999999999999988877766544432211   111111111112222222233445667778


Q ss_pred             ccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHh
Q 015488          322 IYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV  354 (406)
Q Consensus       322 l~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~  354 (406)
                      +.|.+.|++..++.+.+..+|+.++|.+.+.+.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885       122 MGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             HCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999998877664

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.74  E-value=1.1e-06  Score=83.84  Aligned_cols=111  Identities=14%  Similarity=-0.011  Sum_probs=73.0

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccC
Q 015488          245 INVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYP  324 (406)
Q Consensus       245 ~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p  324 (406)
                      .......++..++.++.|+++||+|||+.+..+.+...+.........+............+......+.......+..|
T Consensus        45 ~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~  124 (381)
T PRK03633         45 VVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGT  124 (381)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            33444456778899999999999999999988777666554443333322222111112222222223333444567788


Q ss_pred             cchhhHHHhHHHHhHhHHHHHHHHHHHHHhh
Q 015488          325 TSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT  355 (406)
Q Consensus       325 ~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~  355 (406)
                      .+.|+.+.|..+....+|..++|.+.+.+.+
T Consensus       125 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~  155 (381)
T PRK03633        125 SRNRGRLLAAYMMVYYLGTVLGQLLVSKVST  155 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            8999999999999999999999988876544

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.73  E-value=2.4e-07  Score=92.42  Aligned_cols=131  Identities=18%  Similarity=0.198  Sum_probs=95.5

Q ss_pred             HhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchhhH
Q 015488          251 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRST  330 (406)
Q Consensus       251 ~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~  330 (406)
                      .++..+|+++.|.++||+|||+++..+.++..++.+......+-.....+=+...++..+.....+.+.+|.++++.|+.
T Consensus       128 ~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~  207 (521)
T KOG0255|consen  128 FLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGL  207 (521)
T ss_pred             HHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhH
Confidence            46678899999999999999999999988887776655554443334334344445566777888999999999999999


Q ss_pred             HHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccC
Q 015488          331 GAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  385 (406)
Q Consensus       331 a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  385 (406)
                      +..+ ..+.+.++...|....++..  ++.+.+.+.....++..+. .+++||.+
T Consensus       208 ~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~  258 (521)
T KOG0255|consen  208 ALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESP  258 (521)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcCh
Confidence            9999 88888888888877776665  3334444445554544444 56666764

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.71  E-value=9.9e-07  Score=84.77  Aligned_cols=124  Identities=13%  Similarity=-0.084  Sum_probs=75.4

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh--hhhh---HHHHHHH---HHHHHHhhhhhhhhhh
Q 015488          246 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT--LQSN---ILLTALL---SGARMFSMGTFIIANI  317 (406)
Q Consensus       246 ~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~---~~~~~~~~~~~~~~~~  317 (406)
                      ......+...++....|.++||+|||+.+..+.++..+..+....  ..++   .....+.   +..........+....
T Consensus        56 ~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~  135 (399)
T PRK05122         56 VISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSIL  135 (399)
T ss_pred             HHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHH
Confidence            334445667788899999999999999998877665543222211  1111   0011111   1111112222344456


Q ss_pred             hcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 015488          318 FAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEAL  369 (406)
Q Consensus       318 ~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~  369 (406)
                      +..|.+|.+.|+++.++.......|..++|.+.+.+.+..+....+.+.+..
T Consensus       136 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~  187 (399)
T PRK05122        136 WGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLL  187 (399)
T ss_pred             HHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            6789999999999999988877788888888877666654443333333333

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.71  E-value=2.2e-06  Score=80.22  Aligned_cols=137  Identities=15%  Similarity=0.085  Sum_probs=99.1

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCc
Q 015488          246 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPT  325 (406)
Q Consensus       246 ~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~  325 (406)
                      ..-...++..++..+-..+.||+.||++++..+.+..+.........+-.....-=....+.....+++...+.+++.|+
T Consensus        53 lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp  132 (394)
T COG2814          53 LITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPP  132 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            34444567778888999999999999999887666655444333322211111111112223345567888999999999


Q ss_pred             chhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhccc
Q 015488          326 SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPF  382 (406)
Q Consensus       326 ~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  382 (406)
                      +.|++|.++....-.++..++.-+..++-+..|+..+|...+.+.+++.+......|
T Consensus       133 ~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         133 GKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             cchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999988888888666666667677778899999999999888888877

>PRK09952 shikimate transporter; Provisional

Probab=98.70  E-value=1.8e-06  Score=84.13  Aligned_cols=133  Identities=16%  Similarity=0.052  Sum_probs=80.3

Q ss_pred             hhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhH----H----HHHHHHHHHHHhhhhhhhhhhhccccc
Q 015488          252 FAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNI----L----LTALLSGARMFSMGTFIIANIFAPEIY  323 (406)
Q Consensus       252 ~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~El~  323 (406)
                      +...+|.++.|+++||+|||+.+..+..+.++.........+..    .    ....=+...+...+.++....+..|.+
T Consensus        75 ~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~  154 (438)
T PRK09952         75 LFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESA  154 (438)
T ss_pred             HHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhC
Confidence            45668889999999999999999988777776655444322211    1    111111122223334456678889999


Q ss_pred             CcchhhHHHhHHHHhHhHHHHHHHHHHHHHhh--------hchhhHHHHHHHHHHHHHHHHHHhcccccC
Q 015488          324 PTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT--------SCHQTAAILLLEALIVLSVVVILLIPFETK  385 (406)
Q Consensus       324 p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~--------~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  385 (406)
                      |.+.|+...+.......+|..+++.+...+..        ..+...+|++.++..++. ......+||++
T Consensus       155 p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~  223 (438)
T PRK09952        155 PKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA-LWVRNGMEESA  223 (438)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH-HHHHHhCCCCh
Confidence            99999998888877777777776655443321        223444555544443332 23333455654

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.68  E-value=1.1e-06  Score=84.36  Aligned_cols=127  Identities=12%  Similarity=-0.014  Sum_probs=81.7

Q ss_pred             HHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcch
Q 015488          248 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  327 (406)
Q Consensus       248 ~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~  327 (406)
                      ....++..++.+..+++.||+|||+++..+..+.++.........+.......-....+......+....+..|.+| +.
T Consensus        51 s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~  129 (393)
T PRK09705         51 ALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR  129 (393)
T ss_pred             HHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc
Confidence            33346677888999999999999999999888877766655543332222111112222222233444566788888 67


Q ss_pred             hhHHHhHHHHhHhHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHHHHH
Q 015488          328 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSC-HQTAAILLLEALIVLSVV  375 (406)
Q Consensus       328 R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~-~~~~~~~~~~~~~~i~~~  375 (406)
                      |+.+.|+.......|+.+++.+.+.+.+.. +....+.+++...++..+
T Consensus       130 ~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~  178 (393)
T PRK09705        130 TPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALF  178 (393)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            999999999888888888888877665543 333444455554444433

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.67  E-value=1.9e-06  Score=81.80  Aligned_cols=135  Identities=16%  Similarity=0.048  Sum_probs=81.5

Q ss_pred             HhhhhHHHHHHHHHHhhhchHHHHHH-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchhh
Q 015488          251 SFAELPGLLTAALLVDRVGRKLSMTI-MFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRS  329 (406)
Q Consensus       251 ~~~~~~g~~~~~~l~dr~grR~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~  329 (406)
                      .+...+.....|.++||+|||+.++. +.....+.........+.......-...........+....+..|..|.+.|+
T Consensus        43 ~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~  122 (375)
T TIGR00899        43 AIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGRE  122 (375)
T ss_pred             HHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchh
Confidence            35566777888999999999887654 33333333332222222221111111111112223344556677888887777


Q ss_pred             HH--HhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccC
Q 015488          330 TG--AGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  385 (406)
Q Consensus       330 ~a--~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  385 (406)
                      .+  .+.......+|..++|.+.+.+.+..+....+.+.+.++++..+...++.||.+
T Consensus       123 ~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~  180 (375)
T TIGR00899       123 AVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYP  180 (375)
T ss_pred             hHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            55  577777778888899988877766556566777878777777776666556644

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.65  E-value=1.4e-05  Score=75.40  Aligned_cols=114  Identities=16%  Similarity=0.215  Sum_probs=91.2

Q ss_pred             chhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcchhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhH
Q 015488            3 EGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAW   82 (406)
Q Consensus         3 r~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~   82 (406)
                      |+.++...+...+...+.-+.++...+-+.-++-|++.+...+.++|+--..|+++=.++.+....+...|..+++.++.
T Consensus        71 kpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQ  150 (412)
T PF01770_consen   71 KPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQ  150 (412)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56667777777777788889999999999999999999888777777766668888788899999999999999999888


Q ss_pred             Hhcc--cchhHHHHHHhhHHHHHHHHHHHhccCCcc
Q 015488           83 IVMP--ILTWRWLLALSAIPAFVLLIFIVFMPESPR  116 (406)
Q Consensus        83 ~~~~--~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~  116 (406)
                      .+..  ..+.+.+..+......+.++..+++|-.++
T Consensus       151 llvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~  186 (412)
T PF01770_consen  151 LLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKR  186 (412)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence            7654  446777777777666666677777887655

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.64  E-value=1.2e-05  Score=78.03  Aligned_cols=112  Identities=16%  Similarity=0.171  Sum_probs=71.9

Q ss_pred             cchhhHH-HHHHHHHHHHHHhhc----ccHHHHHHHHHHhhccCCcch-hhHHHHHhhcCC--CcchhHHHHHHHHHHHH
Q 015488            2 EEGSILG-GALVTFVAGLLSAFS----PNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPP--SNRGKWMVVFSTFWTFG   73 (406)
Q Consensus         2 rr~~~~~-~~~~~~i~~~~~~~a----~~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~--~~Rg~~~~~~~~~~~~G   73 (406)
                      |||.+++ +.++..++....+..    .+.....+.=++..+|....- +.-..+.|...+  +.||...+.......+|
T Consensus        57 rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G  136 (433)
T PF03092_consen   57 RRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVG  136 (433)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHH
Confidence            6666665 444443434433332    345555555556556554432 333456677633  33788888888889999


Q ss_pred             HHHHHHhhHHhcccchhHHHHHHhhHHHHHH-HHHHHhccC
Q 015488           74 SVSEAALAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMPE  113 (406)
Q Consensus        74 ~~l~~~l~~~~~~~~~Wr~~f~i~~ip~~~~-~~~~~~~pE  113 (406)
                      .+++..+++.+.+..++|+.|.+.++..++. +...+..+|
T Consensus       137 ~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  137 SLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             HHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence            9999999988888889999998887654444 444555555

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.63  E-value=2.8e-06  Score=92.92  Aligned_cols=108  Identities=18%  Similarity=0.010  Sum_probs=73.3

Q ss_pred             HHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCc
Q 015488          249 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT---LQSNILLTALLSGARMFSMGTFIIANIFAPEIYPT  325 (406)
Q Consensus       249 ~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~  325 (406)
                      +..+..+++.+++|.++||+|||++++.+.++..+..+....   ..+.....+..+...+......+....+.+|.+|.
T Consensus        55 ~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~  134 (1146)
T PRK08633         55 LFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGK  134 (1146)
T ss_pred             HHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCc
Confidence            334566788899999999999999998776554433222211   11212222222222222233345667889999999


Q ss_pred             chhhHHHhHHHHhHhHHHHHHHHHHHHHhhh
Q 015488          326 SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS  356 (406)
Q Consensus       326 ~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~  356 (406)
                      +.|+.+.|+......+|..++|.+.+.+...
T Consensus       135 ~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        135 ENLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             ccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999988776654

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.62  E-value=3.4e-06  Score=78.44  Aligned_cols=141  Identities=18%  Similarity=0.140  Sum_probs=96.3

Q ss_pred             hhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHH--Hhhhhhhhhhh
Q 015488          241 ASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT-LQSNILLTALLSGARM--FSMGTFIIANI  317 (406)
Q Consensus       241 ~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~  317 (406)
                      .+......+..+.+.+.-+.-+++.||+|.|+....+.++..+-.+...+ .+.... ..++....+  ...+.+++.-.
T Consensus        49 ~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~-~~ll~~gll~G~~GasFav~m~  127 (417)
T COG2223          49 GQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPST-WQLLVIGLLLGLAGASFAVGMP  127 (417)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCch-HHHHHHHHHHhcccceehcccc
Confidence            45566777777888888899999999999999888877665543333222 111111 111111111  12334566677


Q ss_pred             hcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhch---hhHHHHHHHHHHHHHHHHHHhcccc
Q 015488          318 FAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH---QTAAILLLEALIVLSVVVILLIPFE  383 (406)
Q Consensus       318 ~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~e  383 (406)
                      ..++-||++.+++|.|+.. .|++|..+..++.|.+....+   .+....++....++..+...+...|
T Consensus       128 ~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d  195 (417)
T COG2223         128 NASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND  195 (417)
T ss_pred             cccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            7899999999999999999 999999999988887776655   4455567777777766666666533

>PRK10133 L-fucose transporter; Provisional

Probab=98.62  E-value=6.2e-06  Score=80.29  Aligned_cols=147  Identities=13%  Similarity=0.040  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHH
Q 015488          196 TTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMT  275 (406)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~  275 (406)
                      ....+...++...+.........|.+....           +..............++..++.+..|.++||+|||+.+.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~-----------~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~   95 (438)
T PRK10133         27 PFALLCSLFFLWAVANNLNDILLPQFQQAF-----------TLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGII   95 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence            344444455555555555555556553221           112223334445556778889999999999999999998


Q ss_pred             HHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHH
Q 015488          276 IMFIFVCIFLLPLV---TLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVG  352 (406)
Q Consensus       276 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~  352 (406)
                      .+..+..+......   ...+........+...+...........+..|..|.+.|....++.+.+..+|..++|.+...
T Consensus        96 ~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~  175 (438)
T PRK10133         96 TGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS  175 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88777665544321   111111111111222222223344455666787777777778889888888899888887654


Q ss_pred             H
Q 015488          353 L  353 (406)
Q Consensus       353 l  353 (406)
                      +
T Consensus       176 l  176 (438)
T PRK10133        176 L  176 (438)
T ss_pred             H
Confidence            4

>PRK12382 putative transporter; Provisional

Probab=98.62  E-value=2.5e-06  Score=81.83  Aligned_cols=112  Identities=13%  Similarity=-0.123  Sum_probs=69.6

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH---hh-----hhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 015488          247 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV---TL-----QSNILLTALLSGARMFSMGTFIIANIF  318 (406)
Q Consensus       247 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (406)
                      .....+...++.+..|.++||+|||+.++.+.+.+.+..+...   ..     .+.....+.-...........+....+
T Consensus        57 ~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~  136 (392)
T PRK12382         57 VGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTW  136 (392)
T ss_pred             HHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344466778889999999999999999887665544322111   10     111111111111111111222344556


Q ss_pred             cccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhch
Q 015488          319 APEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH  358 (406)
Q Consensus       319 ~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~  358 (406)
                      ..|.+|++.|+++.|+.......+..++|.+.+.+.+..+
T Consensus       137 ~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g  176 (392)
T PRK12382        137 GLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFG  176 (392)
T ss_pred             HHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            7899999999999999888777888888888776655444

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.60  E-value=4.3e-06  Score=91.41  Aligned_cols=135  Identities=15%  Similarity=-0.106  Sum_probs=82.1

Q ss_pred             HHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHH--HHHHHHhh-hhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcc
Q 015488          250 TSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCI--FLLPLVTL-QSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  326 (406)
Q Consensus       250 ~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  326 (406)
                      ..+..++.+.++|.++||+|||+++........+  ........ .+.+......+..........+....+.+|++|.+
T Consensus        61 ~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~  140 (1140)
T PRK06814         61 FILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKD  140 (1140)
T ss_pred             HHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCcc
Confidence            3355677888999999999999976432221111  11111111 22222222222333333344567788999999999


Q ss_pred             hhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccC
Q 015488          327 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  385 (406)
Q Consensus       327 ~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  385 (406)
                      .|+.+.|+..+...+|..++|.+.+.+....+....+ +.++...+.+++..+..|+++
T Consensus       141 ~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  198 (1140)
T PRK06814        141 ELLGANALVEAGTFIAILLGTIIGGLATISGNFVILV-ALLMGIAVLGWLASLFIPKTG  198 (1140)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHHHHHHHHHhhCCCCC
Confidence            9999999999999999999999998877755444344 333333333333334444543

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.59  E-value=2.9e-07  Score=84.07  Aligned_cols=103  Identities=16%  Similarity=0.123  Sum_probs=75.1

Q ss_pred             hhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchhhHH
Q 015488          252 FAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTG  331 (406)
Q Consensus       252 ~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a  331 (406)
                      +...+.+...|.++||.|||+++..|.+...+.........+ ..+.+..=.......+-.++.-++.+|+++.+.|+.+
T Consensus        79 ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~-F~afv~aR~l~Gi~kgnl~v~rAiisdV~sek~r~l~  157 (451)
T KOG2615|consen   79 ILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRN-FAAFVLARFLGGIFKGNLSVIRAIISDVVSEKYRPLG  157 (451)
T ss_pred             HHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhccCchHHHHHHHHhhcChhhccce
Confidence            567788889999999999999999988777775444333222 1121111111122344556778899999999999999


Q ss_pred             HhHHHHhHhHHHHHHHHHHHHHhh
Q 015488          332 AGVAYAVGRIGGMVCPLVAVGLVT  355 (406)
Q Consensus       332 ~g~~~~~~~~g~~~~p~~~~~l~~  355 (406)
                      .+.......+|-+++|.+.+++-.
T Consensus       158 ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  158 MSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             eeeeehhhhcchhhcchhhhHHHh
Confidence            999999999999999999887654

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.58  E-value=6.2e-06  Score=79.86  Aligned_cols=139  Identities=14%  Similarity=0.119  Sum_probs=76.2

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh-hhhhHHH--HHH-HHHHHHHhhhhhhhhhhhcc
Q 015488          245 INVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT-LQSNILL--TAL-LSGARMFSMGTFIIANIFAP  320 (406)
Q Consensus       245 ~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~  320 (406)
                      .......+...++..+.|+++||+|||+.+..+.....+....... .......  ... .....+.....+........
T Consensus        50 ~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (420)
T PRK09528         50 IIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIE  129 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhh
Confidence            3444555778889999999999999999887654443332221111 1111000  000 11111111111111111111


Q ss_pred             cccC--cchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhccccc
Q 015488          321 EIYP--TSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  384 (406)
Q Consensus       321 El~p--~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et  384 (406)
                      +..+  .+.|+...|.....+.+|..++|.+.+.+.+. +....|++.++.++++.+..++..+|.
T Consensus       130 ~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~  194 (420)
T PRK09528        130 AYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNI-NPQINFWLGSGSALILLVLLFFAKPDA  194 (420)
T ss_pred             hHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhc-CchHhHHHHHHHHHHHHHHHhcccccc
Confidence            2212  23456677888888899999999998877653 445567777777777666666655443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.58  E-value=2.3e-06  Score=84.65  Aligned_cols=126  Identities=15%  Similarity=0.110  Sum_probs=73.0

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHhhhhhhhhhhhcccccC
Q 015488          246 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSN-ILLTALLSGARMFSMGTFIIANIFAPEIYP  324 (406)
Q Consensus       246 ~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~El~p  324 (406)
                      ......+...++..+.|.++|.+|||..++.+.++..+-.+.....++- .......+.. + ..+.........+|+.|
T Consensus        83 ~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~G-v-gaG~~~~~~~~isEl~p  160 (599)
T PF06609_consen   83 FSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYG-V-GAGVQELAALAISELVP  160 (599)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHH-H-hhHHHHHHHHHHHHhcc
Confidence            3334456667788899999999999999988776665544443332221 1111111111 1 12333345566899999


Q ss_pred             cchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHH
Q 015488          325 TSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLS  373 (406)
Q Consensus       325 ~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~  373 (406)
                      .+.|..+.++.....-.....+|.+...+....++.+.|+++.+...++
T Consensus       161 ~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~  209 (599)
T PF06609_consen  161 NKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIA  209 (599)
T ss_pred             cchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHH
Confidence            9999988877765443344456666544433333445555544444443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00889 2A0110 nucleoside transporter

Probab=98.57  E-value=3.5e-07  Score=88.50  Aligned_cols=114  Identities=18%  Similarity=0.166  Sum_probs=89.4

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhc-c---cHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHH-HHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFS-P---NYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFS-TFWTFGS   74 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a-~---~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~-~~~~~G~   74 (406)
                      +||+.+..+.++..++..+.... +   ++..+++.+++.|++.+... ....++.|..|+++||+..++.+ ..+.+|.
T Consensus       279 g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~  358 (418)
T TIGR00889       279 GIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGS  358 (418)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHH
Confidence            57888888888888776655553 2   34678889999999987653 44567899999999999999997 6788999


Q ss_pred             HHHHHhhHHhccc------chhHHHHHHhhHHHHHH-HHHHHhccCC
Q 015488           75 VSEAALAWIVMPI------LTWRWLLALSAIPAFVL-LIFIVFMPES  114 (406)
Q Consensus        75 ~l~~~l~~~~~~~------~~Wr~~f~i~~ip~~~~-~~~~~~~pES  114 (406)
                      .++|.+++.+.+.      .|||..|.+.++..++. .+..+++||+
T Consensus       359 ~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       359 LLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            9999999887654      57999999887776664 4556677877

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.56  E-value=2.7e-07  Score=84.82  Aligned_cols=141  Identities=18%  Similarity=0.142  Sum_probs=101.7

Q ss_pred             HHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcch
Q 015488          248 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  327 (406)
Q Consensus       248 ~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~  327 (406)
                      ..-.+..++...+.|.+.||+|+|..+++++++.....+.+.+..+-....+.=...........+....+.++.||.+.
T Consensus       113 askA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~  192 (464)
T KOG3764|consen  113 ASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN  192 (464)
T ss_pred             HHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch
Confidence            33346777888899999999999999999887776655554443322211100011111122233445677889999966


Q ss_pred             -hhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccCCcc
Q 015488          328 -RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKE  388 (406)
Q Consensus       328 -R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~~  388 (406)
                       |+++.|+.-.+..+|-.++|.+.+.+.+..|+..+|+++++++++.....++..+.+|..+
T Consensus       193 er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~  254 (464)
T KOG3764|consen  193 ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP  254 (464)
T ss_pred             hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence             7999999999999999999988887777778889999999999999999888875555544

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.56  E-value=1.7e-06  Score=82.49  Aligned_cols=101  Identities=22%  Similarity=0.201  Sum_probs=66.5

Q ss_pred             hhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhH----HHHHHHH----HHHHHhhhhhhhhhhhcccccC
Q 015488          253 AELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNI----LLTALLS----GARMFSMGTFIIANIFAPEIYP  324 (406)
Q Consensus       253 ~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~El~p  324 (406)
                      ...++.++.|+++||+|||+.+..+.++..+.........+..    .....+.    ...+......+....+.+|.+|
T Consensus        47 ~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~  126 (394)
T TIGR00883        47 ARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAP  126 (394)
T ss_pred             HhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCC
Confidence            3356888999999999999999888776665544433322110    0001111    1111112234456678899999


Q ss_pred             cchhhHHHhHHHHhHhHHHHHHHHHHHHH
Q 015488          325 TSMRSTGAGVAYAVGRIGGMVCPLVAVGL  353 (406)
Q Consensus       325 ~~~R~~a~g~~~~~~~~g~~~~p~~~~~l  353 (406)
                      .+.|+...++......+|..+++.+...+
T Consensus       127 ~~~r~~~~~~~~~~~~~G~~i~~~~~~~~  155 (394)
T TIGR00883       127 PGKRGFYGSFQQVGAPVGLLLAALTVLLL  155 (394)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888888888765433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00896 CynX cyanate transporter

Probab=98.54  E-value=4.2e-06  Score=79.04  Aligned_cols=124  Identities=13%  Similarity=0.014  Sum_probs=73.8

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcc
Q 015488          247 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  326 (406)
Q Consensus       247 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  326 (406)
                      .....+...++.+..++++||+|||+.+..+.+...+..... ...+............+......+....+..|.+| +
T Consensus        41 ~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~  118 (355)
T TIGR00896        41 TALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-Q  118 (355)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-c
Confidence            344456778889999999999999999888765544433322 21221111111111111111122334456678887 5


Q ss_pred             hhhHHHhHHHHhHhHHHHHHHHHHHHHhhhch--hhHHHHHHHHHHHH
Q 015488          327 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH--QTAAILLLEALIVL  372 (406)
Q Consensus       327 ~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~--~~~~~~~~~~~~~i  372 (406)
                      .|+++.|+.+....+|..++|.+.+.+.+..+  ....+...++..++
T Consensus       119 ~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~  166 (355)
T TIGR00896       119 RVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALL  166 (355)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            79999999999888888888888776655432  22334444444333

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.53  E-value=1e-05  Score=80.06  Aligned_cols=129  Identities=19%  Similarity=0.216  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHhhh-----chHHHHH-HHHHHHHHHHHHHHhhh--hh-HHHHHHHHHHHHHhhhhhhhhhhhcccccCcc
Q 015488          256 PGLLTAALLVDRV-----GRKLSMT-IMFIFVCIFLLPLVTLQ--SN-ILLTALLSGARMFSMGTFIIANIFAPEIYPTS  326 (406)
Q Consensus       256 ~g~~~~~~l~dr~-----grR~~~~-~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  326 (406)
                      .+.++.+.++||+     |||+.++ .+.+...++...+....  .+ ...........++..........+.+|.+|.+
T Consensus        60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~  139 (491)
T PRK11010         60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE  139 (491)
T ss_pred             HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence            5778899999999     9998644 55444444443332221  11 11211222222233333455678889999999


Q ss_pred             hhhHHHhHHHHhHhHHHHHHHHHHHHHhh-hchhhHHHHHHHHHHHHHHHHHHhcccccC
Q 015488          327 MRSTGAGVAYAVGRIGGMVCPLVAVGLVT-SCHQTAAILLLEALIVLSVVVILLIPFETK  385 (406)
Q Consensus       327 ~R~~a~g~~~~~~~~g~~~~p~~~~~l~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  385 (406)
                      .|+.+.++.....++|..+++.+...+.+ ..+....|.+.++..++..+...+ .||+.
T Consensus       140 ~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~-~~e~~  198 (491)
T PRK11010        140 ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL-APEPT  198 (491)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh-cCCCc
Confidence            99999999999999999999888777766 345566777777777776555544 46654

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.51  E-value=3.7e-06  Score=80.70  Aligned_cols=114  Identities=19%  Similarity=0.254  Sum_probs=82.2

Q ss_pred             chhhHHHHHHHHHHHHHH-h---hcc-cHHHHHHHHHHhhccCCcchhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015488            3 EGSILGGALVTFVAGLLS-A---FSP-NYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   77 (406)
Q Consensus         3 r~~~~~~~~~~~i~~~~~-~---~a~-~~~~l~~~R~l~G~g~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   77 (406)
                      |+-++.+.++.+++.++= +   ..+ .-+.++++|++.|+|.|...+.-.|++..+.+++|-++++....+..+|..+|
T Consensus       102 k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilG  181 (488)
T KOG2325|consen  102 KKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILG  181 (488)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHh
Confidence            566788888888888654 2   223 57889999999999999888888899999999999999999888888888888


Q ss_pred             HHhhHHhcc--cch-----------hHHHHHHhhHHHHHH-HHHHHhccCCcc
Q 015488           78 AALAWIVMP--ILT-----------WRWLLALSAIPAFVL-LIFIVFMPESPR  116 (406)
Q Consensus        78 ~~l~~~~~~--~~~-----------Wr~~f~i~~ip~~~~-~~~~~~~pESp~  116 (406)
                      |.+...+.+  ..|           +-.+-|+.++..++. .++.+++.|.++
T Consensus       182 p~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~  234 (488)
T KOG2325|consen  182 PTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR  234 (488)
T ss_pred             HHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence            888766532  112           223344555444443 334556777655

>PTZ00207 hypothetical protein; Provisional

Probab=98.50  E-value=1.8e-05  Score=78.77  Aligned_cols=123  Identities=13%  Similarity=0.177  Sum_probs=72.7

Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh------hhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchhhH
Q 015488          257 GLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ------SNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRST  330 (406)
Q Consensus       257 g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~  330 (406)
                      ..+.+|++.||+|||+++.++.++..+..+......      +.+...+............++.......+.|| +.|++
T Consensus        77 ~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~  155 (591)
T PTZ00207         77 FLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGA  155 (591)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHH
Confidence            455789999999999999988777766554433321      11111111111111112223344556678897 67999


Q ss_pred             HHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcc
Q 015488          331 GAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIP  381 (406)
Q Consensus       331 a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  381 (406)
                      +.|+......+|+.+.+.+...++.. +....+++.++..++.+++.+.+.
T Consensus       156 a~Gi~~~~~gLGsaI~~~l~~~l~~~-~~~~~fl~l~vl~~vv~ll~~~~v  205 (591)
T PTZ00207        156 VVAIMKTFTGLGSAILGSIQLAFFSD-NTSAYFFFLMSFALVVGILAIVFM  205 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhhe
Confidence            99999999999887544444333332 233445666666666555555544

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.49  E-value=3.8e-05  Score=73.73  Aligned_cols=132  Identities=14%  Similarity=0.033  Sum_probs=74.8

Q ss_pred             hhhHHHHHHHHHHhhhchHHHHH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchhh--
Q 015488          253 AELPGLLTAALLVDRVGRKLSMT-IMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRS--  329 (406)
Q Consensus       253 ~~~~g~~~~~~l~dr~grR~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~--  329 (406)
                      ..+.+.+.+++ .||+|||+.++ .+.+..++.........+...................+....+..|..|.+-|.  
T Consensus        64 ~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (393)
T PRK15011         64 GILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAV  142 (393)
T ss_pred             HHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHH
Confidence            44556666667 99999998754 443333332222222222111111111111111222344455556666665453  


Q ss_pred             HHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccC
Q 015488          330 TGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  385 (406)
Q Consensus       330 ~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  385 (406)
                      ...++.+....+|..++|.+.+.+.+..+....|.+.+..+++.++...++.||.+
T Consensus       143 ~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~  198 (393)
T PRK15011        143 MFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMR  198 (393)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence            33467777788899999999887766666666777777777777666666666654

>TIGR00901 2A0125 AmpG-related permease

Probab=98.48  E-value=6.7e-06  Score=77.69  Aligned_cols=128  Identities=23%  Similarity=0.215  Sum_probs=80.1

Q ss_pred             HHHHHHHHhhh-----chHHHHH-HHHHHHHHHHHHHHhhh--hh-HHHHHHHHHHHHHhhhhhhhhhhhcccccCcchh
Q 015488          258 LLTAALLVDRV-----GRKLSMT-IMFIFVCIFLLPLVTLQ--SN-ILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  328 (406)
Q Consensus       258 ~~~~~~l~dr~-----grR~~~~-~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R  328 (406)
                      ..+.|.++||+     |||+.++ .+.+..++....+.+..  .. +...........+..........+.+|.+|++.|
T Consensus        38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r  117 (356)
T TIGR00901        38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEEL  117 (356)
T ss_pred             HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhh
Confidence            67889999997     8988754 44444444433333221  11 1111111112222222334557788999999999


Q ss_pred             hHHHhHHHHhHhHHHHHHHHHHHHHhhhch--------hhHHHHHHHHHHHHHHHHHHhcccccC
Q 015488          329 STGAGVAYAVGRIGGMVCPLVAVGLVTSCH--------QTAAILLLEALIVLSVVVILLIPFETK  385 (406)
Q Consensus       329 ~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~et~  385 (406)
                      +.+.|+......+|..+++.+.+.+....+        ....|++.++..++..+...+..||.+
T Consensus       118 ~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~  182 (356)
T TIGR00901       118 GYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQ  182 (356)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            999999998888999988888776665544        445666666666666555555556643

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.47  E-value=2.1e-05  Score=76.56  Aligned_cols=139  Identities=12%  Similarity=-0.004  Sum_probs=83.7

Q ss_pred             HHHHHhhhhHHHHHHHHHHh----hhchHHHHHHHHH-HHHHHHHHHHhhhhh-------------HHH----HHHHHHH
Q 015488          247 VFITSFAELPGLLTAALLVD----RVGRKLSMTIMFI-FVCIFLLPLVTLQSN-------------ILL----TALLSGA  304 (406)
Q Consensus       247 ~~~~~~~~~~g~~~~~~l~d----r~grR~~~~~~~~-~~~~~~~~~~~~~~~-------------~~~----~~~~~~~  304 (406)
                      .....+.+++...+.|.++|    |+|||+.++.... ...+.+..+.+..+.             ...    .......
T Consensus        45 ~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~ll  124 (477)
T TIGR01301        45 WLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWIL  124 (477)
T ss_pred             HHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHH
Confidence            34445677888899999999    5999999876433 333333333221110             011    1111111


Q ss_pred             HHHhhhhhhhhhhhcccccCcchh--hHHHhHHHHhHhHHHHHHHHHHHHHh--hh--------c-----hhhHHHHHHH
Q 015488          305 RMFSMGTFIIANIFAPEIYPTSMR--STGAGVAYAVGRIGGMVCPLVAVGLV--TS--------C-----HQTAAILLLE  367 (406)
Q Consensus       305 ~~~~~~~~~~~~~~~~El~p~~~R--~~a~g~~~~~~~~g~~~~p~~~~~l~--~~--------~-----~~~~~~~~~~  367 (406)
                      -+.........-++.+|+.|.+.|  ..+.++.+....+|+.+++.+.+...  +.        .     +....|++-+
T Consensus       125 d~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a  204 (477)
T TIGR01301       125 DVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDI  204 (477)
T ss_pred             HHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHH
Confidence            122333445567789999999876  57888888888888888887654321  10        0     1223466666


Q ss_pred             HHHHHHHHHHHhcccccC
Q 015488          368 ALIVLSVVVILLIPFETK  385 (406)
Q Consensus       368 ~~~~i~~~~~~~~~~et~  385 (406)
                      ++.+++.++..+..+|+.
T Consensus       205 ~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       205 ILLAILTYIALSAVKENP  222 (477)
T ss_pred             HHHHHHHHHHeeeeeccC
Confidence            777777777777777754

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.44  E-value=3.2e-05  Score=74.14  Aligned_cols=129  Identities=15%  Similarity=0.137  Sum_probs=85.9

Q ss_pred             HhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchhhH
Q 015488          251 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRST  330 (406)
Q Consensus       251 ~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~  330 (406)
                      .....+..+.+|+++||+|.|+.+..+.+..+++.....+..+.....++=+..+++....+ ..+.+..+.+|.+.|++
T Consensus        72 ~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~r  150 (511)
T TIGR00806        72 PYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQR  150 (511)
T ss_pred             HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHH
Confidence            35667788999999999999999998888777766655543332222122112222222233 67788899999999999


Q ss_pred             HHhHHHHhHhHHHHHHHHHHHHHhhhchhhHH--HHHHH-HHHHHHHHHHHhcc
Q 015488          331 GAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAA--ILLLE-ALIVLSVVVILLIP  381 (406)
Q Consensus       331 a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~--~~~~~-~~~~i~~~~~~~~~  381 (406)
                      +.|+.++...+|.++++.+.+.+. ..+....  .-+++ +...++.++.+++|
T Consensus       151 atsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP  203 (511)
T TIGR00806       151 AAAYSRAAVLLGVFLSSVLGQLLV-TLGWISYSTLNIISLVFMTFSVFLALFLK  203 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999998887643 3332211  11223 44455556666665

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.42  E-value=2.7e-05  Score=74.77  Aligned_cols=138  Identities=12%  Similarity=0.112  Sum_probs=76.1

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh-h-hh---hHHHHHHHH---HHHHHhhhhhhhh
Q 015488          244 YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT-L-QS---NILLTALLS---GARMFSMGTFIIA  315 (406)
Q Consensus       244 ~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~-~-~~---~~~~~~~~~---~~~~~~~~~~~~~  315 (406)
                      ........+...++.+..|+++||+|||+.++.+.....+....... . ..   .........   ...+......+..
T Consensus        41 g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  120 (396)
T TIGR00882        41 GIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAI  120 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhH
Confidence            33445556778889999999999999999987655444332221111 0 00   000111111   1111111112223


Q ss_pred             hhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhccccc
Q 015488          316 NIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  384 (406)
Q Consensus       316 ~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et  384 (406)
                      ..+..|.-  +.++...|.....+.+|..++|.+.+.+.+ .+...+|.+.+...++..++.++..||.
T Consensus       121 ~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~  186 (396)
T TIGR00882       121 EAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKA  186 (396)
T ss_pred             HHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            33333432  223456677888888888899988775544 3555667777777776666655555554

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.41  E-value=3.7e-07  Score=85.57  Aligned_cols=137  Identities=15%  Similarity=0.059  Sum_probs=93.5

Q ss_pred             HhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHhhhhhhhhhhhcccccCcchhh
Q 015488          251 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALL-SGARMFSMGTFIIANIFAPEIYPTSMRS  329 (406)
Q Consensus       251 ~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~El~p~~~R~  329 (406)
                      .+...+.+.+.|++.||++|+.++.++..+-.+..+..... ++.+.++++ ......-..+.++...+.++.||...|+
T Consensus        78 ~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs-~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs  156 (493)
T KOG1330|consen   78 IVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS-NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRS  156 (493)
T ss_pred             HHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhh
Confidence            35567788999999999999999988877766665544433 222222211 1112223445677888999999999999


Q ss_pred             HHHhHHHHhHhHHHHHHHHHHHHHhhhch-hhHHHHHHHHHHHHHHHHHHhcccccCCcc
Q 015488          330 TGAGVAYAVGRIGGMVCPLVAVGLVTSCH-QTAAILLLEALIVLSVVVILLIPFETKGKE  388 (406)
Q Consensus       330 ~a~g~~~~~~~~g~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~et~~~~  388 (406)
                      ++.++-|.....|++++-.....+-+..+ +.+.|..-+++.+++++...++.+|...+.
T Consensus       157 ~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga  216 (493)
T KOG1330|consen  157 RVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGA  216 (493)
T ss_pred             HHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccccc
Confidence            99999999999888776444332222222 345677788888888888888777765433

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.39  E-value=5.6e-05  Score=72.15  Aligned_cols=111  Identities=20%  Similarity=0.198  Sum_probs=90.9

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhc--ccHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCc--chhHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFS--PNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSN--RGKWMVVFSTFWTFGSV   75 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a--~~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~--Rg~~~~~~~~~~~~G~~   75 (406)
                      |+|++++++.++..++-++.+.+  .+...+++.=.+.++|.|..- -..+.+.|..|+++  |-...+++..+.++|.+
T Consensus        90 G~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl  169 (498)
T COG3104          90 GTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSL  169 (498)
T ss_pred             chhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHH
Confidence            68999999999999999988887  478999999999999998863 45667889988865  33345677888899999


Q ss_pred             HHHHhhHHhcccchhHHHHHHhhHHHHHHHHHHHhc
Q 015488           76 SEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFM  111 (406)
Q Consensus        76 l~~~l~~~~~~~~~Wr~~f~i~~ip~~~~~~~~~~~  111 (406)
                      ++|.+...+.+..||...|.+.++-..+.++.++..
T Consensus       170 ~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~  205 (498)
T COG3104         170 IAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLG  205 (498)
T ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999889999999999887665555544443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.36  E-value=1.1e-05  Score=80.25  Aligned_cols=138  Identities=19%  Similarity=0.156  Sum_probs=88.4

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHhhhhhhhhhhhccccc
Q 015488          245 INVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNIL-LTALLSGARMFSMGTFIIANIFAPEIY  323 (406)
Q Consensus       245 ~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~El~  323 (406)
                      +......+++.+|.++.|.++|++|||+.+..+.+...+..+......+... ...-.+. .+...+...+...|.+|+-
T Consensus        93 ~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~-G~g~G~~~~~~piy~sEia  171 (513)
T KOG0254|consen   93 LLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILT-GLGVGGASVLAPVYISEIA  171 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh-ccchhhhhhcchhhHhhcC
Confidence            4455556788999999999999999999998877666655444443332211 1111111 1222233356788999999


Q ss_pred             CcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhc--hhhHHHHHHHHHHHHHHHHHHhcccccC
Q 015488          324 PTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC--HQTAAILLLEALIVLSVVVILLIPFETK  385 (406)
Q Consensus       324 p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~et~  385 (406)
                      |++.|+.-.+.......+|..++ ++.++.....  ++..++.+..+.+++..+. +++.||+.
T Consensus       172 p~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp  233 (513)
T KOG0254|consen  172 PAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESP  233 (513)
T ss_pred             ChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCCh
Confidence            99999999998888877666665 4545444332  3334555556666666666 55666653

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.35  E-value=1e-05  Score=77.08  Aligned_cols=142  Identities=23%  Similarity=0.249  Sum_probs=93.2

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHhhhhh-hhhhhhccc
Q 015488          247 VFITSFAELPGLLTAALLVDRV-GRKLSMTIMFIFVCIFLLPLVTLQ---SNILLTALLSGARMFSMGTF-IIANIFAPE  321 (406)
Q Consensus       247 ~~~~~~~~~~g~~~~~~l~dr~-grR~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~E  321 (406)
                      .+..+++.+ ..+++||++||+ |+|+.++.+.++..+--+.+....   .....+.+...  ....|.+ +.......|
T Consensus        68 ~~y~slVY~-t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I--~iG~Gl~K~NiS~llg~  144 (498)
T COG3104          68 SAYGSLVYL-TPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALI--IVGTGLFKPNISSLLGE  144 (498)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHH--HhccccccccHHHHHHH
Confidence            333344433 457899999997 999988887665444333322221   11122111111  1122222 445677889


Q ss_pred             ccCc--chhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccCCccccc
Q 015488          322 IYPT--SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVN  391 (406)
Q Consensus       322 l~p~--~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~~~  391 (406)
                      +||+  ..|-.+.++-++..++|++++|.+.+++.+..+.+..|...++-..++.+..+..++..++...++
T Consensus       145 ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~  216 (498)
T COG3104         145 LYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVP  216 (498)
T ss_pred             hcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCC
Confidence            9987  347889999999999999999999998888877777788888888888877777665555554443

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.33  E-value=2e-05  Score=76.23  Aligned_cols=132  Identities=15%  Similarity=0.144  Sum_probs=77.6

Q ss_pred             HhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh--hh-HHHH-HHHHHHHHHhhhhhhhhhhhcccccCcc
Q 015488          251 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ--SN-ILLT-ALLSGARMFSMGTFIIANIFAPEIYPTS  326 (406)
Q Consensus       251 ~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~--~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~El~p~~  326 (406)
                      .+++++|+..+++++||+|||..+.++.+...+..+.+....  +. -..+ .-++.+ ............|..|+-|++
T Consensus        70 ~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~G-l~~gl~~~~~pmyl~E~sP~~  148 (485)
T KOG0569|consen   70 FIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVG-LACGLSTGLVPMYLTEISPKN  148 (485)
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHhHHHHHHHHHHHhhcChhh
Confidence            467889999999999999999888776655544433333211  11 1111 111111 111122345667889999999


Q ss_pred             hhhHHHhHHHHhHhHHHHHHHHH-HHHHhhhchhhHHH--HHHHHHHHHHHHHHHhcccccC
Q 015488          327 MRSTGAGVAYAVGRIGGMVCPLV-AVGLVTSCHQTAAI--LLLEALIVLSVVVILLIPFETK  385 (406)
Q Consensus       327 ~R~~a~g~~~~~~~~g~~~~p~~-~~~l~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~et~  385 (406)
                      .||....+......+|-.++..+ .+.++.... .|++  .+..+.+++..+.. .+.||+.
T Consensus       149 ~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~-~W~~l~~~~~i~~~~~l~~l-~~~PESP  208 (485)
T KOG0569|consen  149 LRGALGTLLQIGVVIGILLGQVLGLPSLLGTED-LWPYLLAFPLIPALLQLALL-PFLPESP  208 (485)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHccHHhcCCCc-chHHHHHHHHHHHHHHHHHH-hcCCCCc
Confidence            99999888888888877777444 344443322 2333  23334445554444 4446764

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.31  E-value=0.00043  Score=67.25  Aligned_cols=111  Identities=21%  Similarity=0.271  Sum_probs=84.5

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc---hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG---HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   77 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~---~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   77 (406)
                      |||..+........+...+..+.. ++.+ +   +.|+.-|..   .....|+++.+..++|....++....+..|..++
T Consensus        90 grk~~L~~~~~~~~l~~~~~~~~~-~~~~-~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~  164 (463)
T KOG2816|consen   90 GRKVVLLLPLFGTILPALCLLFQG-YWFF-L---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIG  164 (463)
T ss_pred             hhhhhHHHHHHHHHHhHHHHHHHH-HHHh-h---hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHH
Confidence            688888888888887777766666 3322 2   566544332   3456678999999999999999999899999999


Q ss_pred             HHhhHHhcccchhHHHHHHhhHHHHHH-HHHHHhccCCcc
Q 015488           78 AALAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMPESPR  116 (406)
Q Consensus        78 ~~l~~~~~~~~~Wr~~f~i~~ip~~~~-~~~~~~~pESp~  116 (406)
                      |.++..+....|-=.+|.+..+..++. .+.+.++|||-+
T Consensus       165 p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~  204 (463)
T KOG2816|consen  165 PALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQ  204 (463)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccC
Confidence            998888777777888888888777665 567788999854

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.26  E-value=0.00013  Score=70.27  Aligned_cols=130  Identities=18%  Similarity=0.170  Sum_probs=81.6

Q ss_pred             hHHHHHHHHHHhhh-----chHH-HHHHHHHHHHHHHHHHHhhh--hhHH-HHHHHHHHHHHhhhhhhhhhhhcccccCc
Q 015488          255 LPGLLTAALLVDRV-----GRKL-SMTIMFIFVCIFLLPLVTLQ--SNIL-LTALLSGARMFSMGTFIIANIFAPEIYPT  325 (406)
Q Consensus       255 ~~g~~~~~~l~dr~-----grR~-~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~El~p~  325 (406)
                      .+...+.|.++||+     |||+ .+..+.+...++...+....  .+.. .........++.....+....+.+|.+|+
T Consensus        46 ~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~  125 (402)
T PRK11902         46 YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHP  125 (402)
T ss_pred             HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            45678899999999     8876 45555555554444333321  1111 11111111222223345667888999999


Q ss_pred             chhhHHHhHHHHhHhHHHHHHHHHHHHHhhh-chhhHHHHHHHHHHHHHHHHHHhcccccC
Q 015488          326 SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS-CHQTAAILLLEALIVLSVVVILLIPFETK  385 (406)
Q Consensus       326 ~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~et~  385 (406)
                      +.|+.+.++......+|..+++.+...+.+. .+....|.+.++..++..+.. +..||++
T Consensus       126 ~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~-~~~~e~~  185 (402)
T PRK11902        126 EERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTT-LWAPEPE  185 (402)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH-HhcCCCc
Confidence            9999999999988888888888877766653 245556777777666655543 4445653

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.19  E-value=2e-05  Score=80.20  Aligned_cols=131  Identities=10%  Similarity=0.101  Sum_probs=84.4

Q ss_pred             HhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh----------------------------h---------
Q 015488          251 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ----------------------------S---------  293 (406)
Q Consensus       251 ~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~----------------------------~---------  293 (406)
                      .++..++.+..+++.||.|||+.+.++.++.++..+.....+                            +         
T Consensus        78 ~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~  157 (633)
T TIGR00805        78 EIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQ  157 (633)
T ss_pred             hHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccc
Confidence            355667778899999999999988777666655433322110                            0         


Q ss_pred             --------h--HHHHHHHHHHHH----HhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhc--
Q 015488          294 --------N--ILLTALLSGARM----FSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC--  357 (406)
Q Consensus       294 --------~--~~~~~~~~~~~~----~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~--  357 (406)
                              .  .....+++...+    .....++....+..|.+|++.|+...|+.+....+|..+++.+.+.+.+..  
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d  237 (633)
T TIGR00805       158 CPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVD  237 (633)
T ss_pred             cccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccc
Confidence                    0  001111112222    122334566789999999999999999999999999999988877655321  


Q ss_pred             -------------------h-hhHHHHHHHHHHHHHHHHHHhcc
Q 015488          358 -------------------H-QTAAILLLEALIVLSVVVILLIP  381 (406)
Q Consensus       358 -------------------~-~~~~~~~~~~~~~i~~~~~~~~~  381 (406)
                                         + ++..|++.+++.++.++..++++
T Consensus       238 ~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p  281 (633)
T TIGR00805       238 TGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFP  281 (633)
T ss_pred             cccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence                               1 23346677777777666555554

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.12  E-value=4.2e-05  Score=74.41  Aligned_cols=131  Identities=15%  Similarity=0.098  Sum_probs=96.8

Q ss_pred             HhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchh
Q 015488          251 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPL--VTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  328 (406)
Q Consensus       251 ~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R  328 (406)
                      ..+.+++.+.++++.||+|-|+++..+.++.++..+..  ....+.....+.=+..++.....++....+.+.-.|+..|
T Consensus        83 ~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Er  162 (466)
T KOG2532|consen   83 FWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNER  162 (466)
T ss_pred             HHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHH
Confidence            36778899999999999999999988877777654433  2222212222222233333445678888999999999999


Q ss_pred             hHHHhHHHHhHhHHHHHHHHHHHHHhhh-chhhHHHHHHHHHHHHHHHHHHhcc
Q 015488          329 STGAGVAYAVGRIGGMVCPLVAVGLVTS-CHQTAAILLLEALIVLSVVVILLIP  381 (406)
Q Consensus       329 ~~a~g~~~~~~~~g~~~~p~~~~~l~~~-~~~~~~~~~~~~~~~i~~~~~~~~~  381 (406)
                      ++..++.++...+|.+++-.+.+.+-+. .|....|++++++.++-.++.+++.
T Consensus       163 s~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~  216 (466)
T KOG2532|consen  163 STFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFY  216 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999998887677877776 6666788889988887777766654

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.07  E-value=0.00017  Score=70.14  Aligned_cols=138  Identities=19%  Similarity=0.138  Sum_probs=78.1

Q ss_pred             HHHHhhhhHHHHHHHHHHhh----hchHHH-HHHHHHHHHHHHHHHHhhhh----hHHHHHH--HHHHHHHhhhhhhhhh
Q 015488          248 FITSFAELPGLLTAALLVDR----VGRKLS-MTIMFIFVCIFLLPLVTLQS----NILLTAL--LSGARMFSMGTFIIAN  316 (406)
Q Consensus       248 ~~~~~~~~~g~~~~~~l~dr----~grR~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~  316 (406)
                      .+..+...+...+.|.++||    +|||+. ++.+.....+....+....+    .......  ................
T Consensus        42 ~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (437)
T TIGR00792        42 LVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYW  121 (437)
T ss_pred             HHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHh
Confidence            33345667788899999997    677554 45555555544443332211    1111111  1111111111122345


Q ss_pred             hhccccc-CcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhh-------chhhHHHHHHHHHHHHHHHHHHhcccccC
Q 015488          317 IFAPEIY-PTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS-------CHQTAAILLLEALIVLSVVVILLIPFETK  385 (406)
Q Consensus       317 ~~~~El~-p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~et~  385 (406)
                      .+.+|+. +.+.|+...++....+.+|+.+++.+.+++...       .+....+.+.++++++..++..+..+|++
T Consensus       122 al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~  198 (437)
T TIGR00792       122 SLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY  198 (437)
T ss_pred             hCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence            6778887 468899999999988888887776665555432       12234456667776666666666666654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.01  E-value=0.00057  Score=65.30  Aligned_cols=119  Identities=15%  Similarity=0.131  Sum_probs=66.7

Q ss_pred             HHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHH-HHHHHHH-hhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcc
Q 015488          249 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVC-IFLLPLV-TLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  326 (406)
Q Consensus       249 ~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~  326 (406)
                      ...+...++..+.+.++||.|||........... ++...+. ...+.+...........+.....+....+..|  +.+
T Consensus        47 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~--~~~  124 (382)
T TIGR00902        47 AALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANT--WQK  124 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHH--HHH
Confidence            3346667788889999999998654322211111 1111111 11222222111111112222233444445444  256


Q ss_pred             hhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 015488          327 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEAL  369 (406)
Q Consensus       327 ~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~  369 (406)
                      .|+.+.|.....+.+|..++|.+.+.+.+..+....+.+.+..
T Consensus       125 ~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~  167 (382)
T TIGR00902       125 QFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG  167 (382)
T ss_pred             HcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence            7899999999999999999999888887766655555554443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.98  E-value=1.5e-06  Score=86.13  Aligned_cols=89  Identities=15%  Similarity=0.220  Sum_probs=2.9

Q ss_pred             HHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhHHhcc------------------
Q 015488           26 YISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMP------------------   86 (406)
Q Consensus        26 ~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~~~------------------   86 (406)
                      +..|+++.++.|+|..... ...+|+=|..++++-+...++......+|+++|.+++.....                  
T Consensus       141 ~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~  220 (539)
T PF03137_consen  141 FYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPS  220 (539)
T ss_dssp             -----------SSS------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCC
Confidence            4679999999999988764 567889999999999999999999999999888877765321                  


Q ss_pred             cch----hHHHHHHhhHHHHHHHHHHHhccCC
Q 015488           87 ILT----WRWLLALSAIPAFVLLIFIVFMPES  114 (406)
Q Consensus        87 ~~~----Wr~~f~i~~ip~~~~~~~~~~~pES  114 (406)
                      +..    |-.=|++.+...++..+..+.+|++
T Consensus       221 dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~  252 (539)
T PF03137_consen  221 DPRWVGAWWLGFLICGILLFLSAIPLFFFPKK  252 (539)
T ss_dssp             --------------------------------
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            112    4444555555555555556666655

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=97.96  E-value=0.00013  Score=71.86  Aligned_cols=130  Identities=18%  Similarity=0.091  Sum_probs=90.8

Q ss_pred             HhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH--HHhhhhhhhhhhhcccccCcchh
Q 015488          251 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGAR--MFSMGTFIIANIFAPEIYPTSMR  328 (406)
Q Consensus       251 ~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~El~p~~~R  328 (406)
                      ..+......+.+.+.||+|.|.+.+.+.+++.+.++...+..+.+.. .+.++..  +.....+...-++.. .+..+.|
T Consensus        91 ~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l-~lt~gvi~G~G~~~~~~paiviv~-~YF~kkR  168 (509)
T KOG2504|consen   91 LGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQL-YLTFGVIGGLGLGLIYLPAVVILG-TYFEKKR  168 (509)
T ss_pred             HHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHhhccchhhhcchhhhhh-hHhHHHH
Confidence            34455566788899999999999999887777665554443332222 1111111  111112223333444 4556779


Q ss_pred             hHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhccc
Q 015488          329 STGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPF  382 (406)
Q Consensus       329 ~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  382 (406)
                      +.|.|++.+...+|.++-|.+..++++..|+.+...+++.+++-+++....+.|
T Consensus       169 ~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  169 ALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             HHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999988888888888888888889999888888888888877

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.93  E-value=0.00015  Score=70.37  Aligned_cols=138  Identities=20%  Similarity=0.156  Sum_probs=97.8

Q ss_pred             HhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchhhH
Q 015488          251 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRST  330 (406)
Q Consensus       251 ~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~  330 (406)
                      ++..++.+..-|.++||+|||..+....+.+.+-...+.. .. ++... ...........++..+.+.++.-..+.|..
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~-~~-~~~~~-~~~l~g~~~~~~s~~~a~vadis~~~~R~~  148 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLF-QG-YWFFL-LLGLSGGFSAIFSVGFAYVADISSEEERSS  148 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHH-HH-HHHhh-hcccccchhhhhhhhhhheeeccchhHHHH
Confidence            3445667778889999999999988776555443322222 11 22211 111112223445667888999999999999


Q ss_pred             HHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccCCccccc
Q 015488          331 GAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVN  391 (406)
Q Consensus       331 a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~~~  391 (406)
                      +.|+.+..-+.+..++|...+++....+....+.+-.+..+++.+...++.||+..++.++
T Consensus       149 ~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~  209 (463)
T KOG2816|consen  149 SIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERS  209 (463)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccc
Confidence            9999999888888889988887777766666677777888888888888889987766554

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.92  E-value=0.0016  Score=60.70  Aligned_cols=140  Identities=19%  Similarity=0.133  Sum_probs=87.0

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 015488          247 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV---TLQSNILLTALLSGARMFSMGTFIIANIFAPEIY  323 (406)
Q Consensus       247 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~  323 (406)
                      .+....+...+++..+++.||+|+|+-++.++.+..+......   ...+-......++.........-+..+.+.+.+.
T Consensus        54 qfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg  133 (422)
T COG0738          54 QFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLG  133 (422)
T ss_pred             HHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhC
Confidence            3444466788889999999999999999988777766544332   1111111111111111111111245667778888


Q ss_pred             CcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhh-------------------chhhHHHHHHHHHHHHHHHHHHhcc-cc
Q 015488          324 PTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS-------------------CHQTAAILLLEALIVLSVVVILLIP-FE  383 (406)
Q Consensus       324 p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~-------------------~~~~~~~~~~~~~~~i~~~~~~~~~-~e  383 (406)
                      |.+..+.=.++...+..+|++++|.+...++..                   .....+|..++...++..+.....+ ||
T Consensus       134 ~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~  213 (422)
T COG0738         134 KPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPD  213 (422)
T ss_pred             CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCc
Confidence            888888888999999999999999998877662                   1123466666666655555544433 44


Q ss_pred             cCC
Q 015488          384 TKG  386 (406)
Q Consensus       384 t~~  386 (406)
                      .+.
T Consensus       214 ~~~  216 (422)
T COG0738         214 LQV  216 (422)
T ss_pred             CCc
Confidence            433

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.92  E-value=0.0096  Score=56.39  Aligned_cols=103  Identities=25%  Similarity=0.228  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcchhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhHHhcc
Q 015488            7 LGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMP   86 (406)
Q Consensus         7 ~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~~~   86 (406)
                      .+..+++.++.++.++++|...=+++-.+.+++.|.+-+...=++...|+.    ..+.+..+.+.+.++|+..-..+.+
T Consensus        93 ~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~~y~~~----~l~~wssGTG~aGl~Ga~~y~~lT~  168 (402)
T PF02487_consen   93 LICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTHFYGKS----SLSAWSSGTGGAGLVGALYYLGLTT  168 (402)
T ss_pred             HHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHHhcCcc----ccccccCCcChhhHHHHHHHHHHHH
Confidence            445667777778889999999888888889888876533221133455542    3556677777777777765544433


Q ss_pred             cchh--HHHHHHhh-HHHHHHHHHHHhccCC
Q 015488           87 ILTW--RWLLALSA-IPAFVLLIFIVFMPES  114 (406)
Q Consensus        87 ~~~W--r~~f~i~~-ip~~~~~~~~~~~pES  114 (406)
                       .++  |..+++.. +|.+.....++.+|.+
T Consensus       169 -~g~s~~~tll~~~~lp~~~~~~~f~~L~~~  198 (402)
T PF02487_consen  169 -LGLSPRTTLLIMLVLPAIFLLSYFFLLPSP  198 (402)
T ss_pred             -hCcCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence             444  66655544 4544444444455544

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.88  E-value=0.0013  Score=63.03  Aligned_cols=126  Identities=22%  Similarity=0.171  Sum_probs=72.6

Q ss_pred             HHHHHHHhhhchHHHHHHHHHH-HHHHHHHHH-h-hh-hhH-HHHHHHHHHHHHhhhhhhhhhhhcccccCcchhhHHHh
Q 015488          259 LTAALLVDRVGRKLSMTIMFIF-VCIFLLPLV-T-LQ-SNI-LLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAG  333 (406)
Q Consensus       259 ~~~~~l~dr~grR~~~~~~~~~-~~~~~~~~~-~-~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g  333 (406)
                      ++..+..||.|||+.++....+ ...+...+. . .. ... ..........++....-.....+..|..+.+.++.+.+
T Consensus        57 ~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~  136 (390)
T TIGR02718        57 LVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNA  136 (390)
T ss_pred             HHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHH
Confidence            3335567888999887554322 221222222 1 11 111 11111111111122222345556778888888888877


Q ss_pred             HHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhccccc
Q 015488          334 VAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  384 (406)
Q Consensus       334 ~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et  384 (406)
                      .......+|..+++...+.+.+..+...+|.+.++..++..+..++++||+
T Consensus       137 ~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~  187 (390)
T TIGR02718       137 VQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRA  187 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            777777788888887777777766666778888887777766666665553

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.84  E-value=0.00017  Score=70.54  Aligned_cols=139  Identities=17%  Similarity=0.174  Sum_probs=101.2

Q ss_pred             HHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcch
Q 015488          248 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  327 (406)
Q Consensus       248 ~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~  327 (406)
                      .+..++.+++...++.+.||+.-.+.+..+.+..+++.......++.....++-+...++..+.++..-.+.+.-|..+.
T Consensus        88 t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e  167 (495)
T KOG2533|consen   88 TVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE  167 (495)
T ss_pred             HHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh
Confidence            34457788999999999999997776666655555544333333333333333334445556677888889999999999


Q ss_pred             hhHHHhHHHHhHhHHHHHHHHHHHHHhh------hchhhHHHHHHHHHHHHHHHHHHhcccccCC
Q 015488          328 RSTGAGVAYAVGRIGGMVCPLVAVGLVT------SCHQTAAILLLEALIVLSVVVILLIPFETKG  386 (406)
Q Consensus       328 R~~a~g~~~~~~~~g~~~~p~~~~~l~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~  386 (406)
                      |++-.|+-++...+|+++++++...+..      ..++.+.|++-++++++.+++.+++.|+...
T Consensus       168 ~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  168 RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS  232 (495)
T ss_pred             hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence            9999999999999999999998876532      2234567899999999998888887766443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=97.84  E-value=0.0016  Score=62.28  Aligned_cols=136  Identities=15%  Similarity=0.069  Sum_probs=71.5

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHH-HHHHHHHHHHHhh-hhhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 015488          246 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTL-QSNILLTALLSGARMFSMGTFIIANIFAPEIY  323 (406)
Q Consensus       246 ~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~  323 (406)
                      ......+...++.++.+.++||.|||....-.. +...+........ .+.+.................+....+..+. 
T Consensus        44 ~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~-  122 (382)
T PRK11128         44 LLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW-  122 (382)
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH-
Confidence            334445667788888999999999853221111 1111111111111 1212211111111111222233344444443 


Q ss_pred             CcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhccccc
Q 015488          324 PTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  384 (406)
Q Consensus       324 p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et  384 (406)
                       .+.|+.+.|.....+.+|..++|.+.+.+.+..+....+.+.++..++..+. .++.||+
T Consensus       123 -~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~-~~~~~~~  181 (382)
T PRK11128        123 -QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLG-QLLRPTI  181 (382)
T ss_pred             -HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHH-HHccCCC
Confidence             3457888888899999999999999888777656555666555544444333 3344554

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.82  E-value=0.03  Score=52.72  Aligned_cols=72  Identities=13%  Similarity=0.216  Sum_probs=51.3

Q ss_pred             HHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhHHhcccc-hhHHHHHHhhHH
Q 015488           29 LLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPIL-TWRWLLALSAIP  100 (406)
Q Consensus        29 l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~~~~~-~Wr~~f~i~~ip  100 (406)
                      ..+.-.+.|+|.+... ....+..|.+|+++|++..++.....-.|.++++.+...+.+.+ .=|....++..+
T Consensus        92 a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a  165 (403)
T PF03209_consen   92 AALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVA  165 (403)
T ss_pred             HHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHH
Confidence            3444456666666543 44557889999999999999999999999999999887766544 344444444443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.81  E-value=0.00075  Score=59.82  Aligned_cols=107  Identities=13%  Similarity=0.040  Sum_probs=62.8

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHH-hhhh--hhhhhhhc
Q 015488          247 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSN----ILLTALLSGARMF-SMGT--FIIANIFA  319 (406)
Q Consensus       247 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~--~~~~~~~~  319 (406)
                      .....++...| +..|.+.|+.|.|..+.++.+...+-...+......    .....++...... ...+  .+....-.
T Consensus        43 ~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~  121 (250)
T PF06813_consen   43 STAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTC  121 (250)
T ss_pred             HHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHH
Confidence            33444555554 788999999999999888766655543333321111    1111222111111 1111  23334445


Q ss_pred             ccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhh
Q 015488          320 PEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT  355 (406)
Q Consensus       320 ~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~  355 (406)
                      .+-||. .|+++.|+.-....+++.+-..+...+..
T Consensus       122 ~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~  156 (250)
T PF06813_consen  122 VRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFG  156 (250)
T ss_pred             HHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence            588985 79999999999998877766666655544

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.78  E-value=7.4e-07  Score=87.14  Aligned_cols=104  Identities=18%  Similarity=0.186  Sum_probs=69.5

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 015488          247 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ---SNILLTALLSGARMFSMGTFIIANIFAPEIY  323 (406)
Q Consensus       247 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~  323 (406)
                      .....++..+|++++|+++||+|||+.+..+.++..+..+......   +.......-+..++...+.......+..|..
T Consensus        52 ~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~  131 (451)
T PF00083_consen   52 TSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIA  131 (451)
T ss_pred             HHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3444577889999999999999999998887666555444333322   2221111111222223344567788999999


Q ss_pred             CcchhhHHHhHHHHhHhHHHHHHHHHH
Q 015488          324 PTSMRSTGAGVAYAVGRIGGMVCPLVA  350 (406)
Q Consensus       324 p~~~R~~a~g~~~~~~~~g~~~~p~~~  350 (406)
                      |++.|+...++......+|..++..+.
T Consensus       132 ~~~~R~~~~~~~~~~~~~G~~~~~~~~  158 (451)
T PF00083_consen  132 PPKHRGFLSSLFQLFWALGILLASLIG  158 (451)
T ss_pred             ccccccccccccccccccccccccccc
Confidence            999999998888887777776666553

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.74  E-value=0.021  Score=55.06  Aligned_cols=61  Identities=13%  Similarity=0.063  Sum_probs=45.3

Q ss_pred             cccHHHHHHHHHHhhccCCcchhh-HHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhHH
Q 015488           23 SPNYISLLILRGLAGAGLGSGHVF-FSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWI   83 (406)
Q Consensus        23 a~~~~~l~~~R~l~G~g~g~~~~~-~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~   83 (406)
                      -+|-+.++..-.+.|+|.+..... ..|++|.++++.+.+..++.=.....+.+.|+.+-..
T Consensus        99 ~~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~  160 (461)
T KOG3098|consen   99 FPNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFI  160 (461)
T ss_pred             hcchHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhhee
Confidence            356677888999999998864433 3578999999999999888666666666766655443

>PRK09669 putative symporter YagG; Provisional

Probab=97.71  E-value=0.00056  Score=66.78  Aligned_cols=135  Identities=16%  Similarity=0.108  Sum_probs=71.8

Q ss_pred             HHHhhhhHHHHHHHHHHhh----hchHHHHH-HHHHHHHHHHHHHHhhh----hhHHHHHH--HHHHHHHhhhhhhhhhh
Q 015488          249 ITSFAELPGLLTAALLVDR----VGRKLSMT-IMFIFVCIFLLPLVTLQ----SNILLTAL--LSGARMFSMGTFIIANI  317 (406)
Q Consensus       249 ~~~~~~~~g~~~~~~l~dr----~grR~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~  317 (406)
                      +.-+...+...+.|+++||    +|||+.++ .+.+..++....+....    ........  .................
T Consensus        53 i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~a  132 (444)
T PRK09669         53 VVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCA  132 (444)
T ss_pred             HHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHH
Confidence            3334556677888999998    67765544 45454444443322211    11111111  11111111122233456


Q ss_pred             hcccccC-cchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhch-------hhHHHHHHHHHHHHHHHHHHhcccc
Q 015488          318 FAPEIYP-TSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-------QTAAILLLEALIVLSVVVILLIPFE  383 (406)
Q Consensus       318 ~~~El~p-~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~e  383 (406)
                      +.+|+.+ .+.|....++...++.+|+.+++.+..++....+       ....+.+++++++++.++.++..+|
T Consensus       133 l~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e  206 (444)
T PRK09669        133 MPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKE  206 (444)
T ss_pred             hHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEE
Confidence            7788874 4779999999998888888887765544443221       1123445555555555544444434

>TIGR00788 fbt folate/biopterin transporter

Probab=97.70  E-value=0.0027  Score=62.41  Aligned_cols=131  Identities=15%  Similarity=0.118  Sum_probs=72.2

Q ss_pred             hhhhHHHHHHHHHHhhhc-----hHHHHHHHHHHHH-HHHHHHHhhhhh-HHHHHHHHHHHHHhhhhhhhhhhhcccccC
Q 015488          252 FAELPGLLTAALLVDRVG-----RKLSMTIMFIFVC-IFLLPLVTLQSN-ILLTALLSGARMFSMGTFIIANIFAPEIYP  324 (406)
Q Consensus       252 ~~~~~g~~~~~~l~dr~g-----rR~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~El~p  324 (406)
                      +...+-. +.|.++||++     ||+.++.+.++.+ +....+....+. .......+...++....-...-.+..|..+
T Consensus        72 lpw~~K~-l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~  150 (468)
T TIGR00788        72 LGWALKP-FAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR  150 (468)
T ss_pred             HHHHHHH-HHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Confidence            3334444 4899999996     6666666655542 222222211121 122222223323323333456677788888


Q ss_pred             cchhhH---HHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccC
Q 015488          325 TSMRST---GAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  385 (406)
Q Consensus       325 ~~~R~~---a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  385 (406)
                       +.+..   ..+..+....+|..+++.+.+.+.+..+....+.+.++..++..+. .++.+|.+
T Consensus       151 -~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~-~~~~~E~~  212 (468)
T TIGR00788       151 -ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFV-SNLSKERR  212 (468)
T ss_pred             -cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH-HHhccccc
Confidence             44433   3344444445788888888887776655556677777777666444 34456764

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.65  E-value=0.002  Score=65.02  Aligned_cols=90  Identities=12%  Similarity=0.178  Sum_probs=67.6

Q ss_pred             HHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhHHhc----cc-----------c--
Q 015488           27 ISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVM----PI-----------L--   88 (406)
Q Consensus        27 ~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~~----~~-----------~--   88 (406)
                      .+++++-++.|+|.... +...+|+=|...+++-....++....-.+|+++|.+++.+..    +.           .  
T Consensus       238 llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrW  317 (735)
T KOG3626|consen  238 LLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRW  317 (735)
T ss_pred             HHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcch
Confidence            36888999999998765 356778889999999899999998888888888888776642    11           1  


Q ss_pred             --hhHHHHHHhhHHHHHHHHHHHhccCCcc
Q 015488           89 --TWRWLLALSAIPAFVLLIFIVFMPESPR  116 (406)
Q Consensus        89 --~Wr~~f~i~~ip~~~~~~~~~~~pESp~  116 (406)
                        -|..=|++.+...++..+.++++|....
T Consensus       318 IGAWWlGFLi~g~~~~~~a~p~f~fPk~lp  347 (735)
T KOG3626|consen  318 IGAWWLGFLICGALLLFSAVPLFFFPKELP  347 (735)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCcccCc
Confidence              3666677777777777777777776643

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=97.52  E-value=0.00063  Score=61.89  Aligned_cols=104  Identities=14%  Similarity=0.262  Sum_probs=75.1

Q ss_pred             HHHHHHHHhhcccHHHHHHHHHHhhccCCcchhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhHHhcccc--hh
Q 015488           13 TFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPIL--TW   90 (406)
Q Consensus        13 ~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~~~~~--~W   90 (406)
                      .......--+.++...+-+.-++-|...+.+..-++|+-+..+|+++.+..+......-.|...++.++..+.+..  +.
T Consensus        82 ~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy  161 (433)
T KOG3810|consen   82 GVPVWIMLVFGPSVKAMQVLEFFYGPATAAEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSY  161 (433)
T ss_pred             hhHHHHHHHhcCCchheeeehhhcChHHHHHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccch
Confidence            3444455567788888888888888877777666778889999999999999999999999999998888876533  44


Q ss_pred             HHHHHHhhHHHHHHHHHHHhccCCcc
Q 015488           91 RWLLALSAIPAFVLLIFIVFMPESPR  116 (406)
Q Consensus        91 r~~f~i~~ip~~~~~~~~~~~pESp~  116 (406)
                      +.+=.+...-..+......++|.-||
T Consensus       162 ~~LN~ISL~~~~ia~~~A~fLP~v~r  187 (433)
T KOG3810|consen  162 TTLNYISLAEVTIAVLLALFLPRVKR  187 (433)
T ss_pred             hhhchhhHHHHHHHHHHHhhCCCCch
Confidence            44444444444445556667776654

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=97.52  E-value=0.0052  Score=58.47  Aligned_cols=137  Identities=19%  Similarity=0.214  Sum_probs=63.7

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh-h-----hhhHHHHHHHHHHHHHhhhhhhhhhh
Q 015488          244 YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT-L-----QSNILLTALLSGARMFSMGTFIIANI  317 (406)
Q Consensus       244 ~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (406)
                      ....-...+..++...+.|.++||.|.|+-++....+..+...+... .     +.+..... ..+..+......+....
T Consensus        46 G~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~-iig~i~l~~~f~~~~~~  124 (412)
T PF01306_consen   46 GIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGA-IIGGIYLGLVFNAGVPL  124 (412)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHH-HHTTTTTTTTTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcccchH
Confidence            33334445667778888999999999776555433322222111111 1     11111111 11111111111111111


Q ss_pred             hcccccCc---chhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhccccc
Q 015488          318 FAPEIYPT---SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  384 (406)
Q Consensus       318 ~~~El~p~---~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et  384 (406)
                        .|.+-.   +..+.-.|=..+.|.+|-.++..+.+.+++. +....+.+..+..++..++..+..|+.
T Consensus       125 --~Ea~~er~sr~~~feYG~~R~wGSig~ai~s~~~G~L~~i-~p~~~fwi~s~~~~il~lll~~~~~~~  191 (412)
T PF01306_consen  125 --SEAYAERVSRRNGFEYGRARMWGSIGFAIASLLAGILFNI-NPNIIFWIASAAAIILLLLLLLLKPDV  191 (412)
T ss_dssp             --HHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHSS---S
T ss_pred             --HHHHHHHHHHHhcCCcchHHHHhhHHHHHHHHHhheeeee-CccHHHHHHHHHHHHHHHHHHHcCCcC
Confidence              133322   2234445666667788888888888887763 444444444444444445545555443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.52  E-value=0.0007  Score=64.02  Aligned_cols=95  Identities=15%  Similarity=0.056  Sum_probs=62.9

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh--hhH---HHHHHHH--HHHHHhhhhhhhhhhhc
Q 015488          247 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ--SNI---LLTALLS--GARMFSMGTFIIANIFA  319 (406)
Q Consensus       247 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~--~~~~~~~~~~~~~~~~~  319 (406)
                      .....++.+.|.+..|++.||+|||+++...+++..++.+......  ...   ...+.++  ...+.+.|=+++..+++
T Consensus        90 n~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~  169 (538)
T KOG0252|consen   90 NAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIM  169 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHh
Confidence            3444577889999999999999999999877776666655333321  111   1111111  11122334478889999


Q ss_pred             ccccCcchhhHHHhHHHHhHhH
Q 015488          320 PEIYPTSMRSTGAGVAYAVGRI  341 (406)
Q Consensus       320 ~El~p~~~R~~a~g~~~~~~~~  341 (406)
                      +|.-..+.|++-.+...++..+
T Consensus       170 SE~an~~~RGa~iaavFa~Qg~  191 (538)
T KOG0252|consen  170 SESANKKTRGAFIAAVFAMQGF  191 (538)
T ss_pred             hhhhhhccccceeEEEEEecch
Confidence            9999999999888777665443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=97.49  E-value=0.00081  Score=65.32  Aligned_cols=131  Identities=18%  Similarity=0.122  Sum_probs=76.8

Q ss_pred             hhhHHHHHHHHHHh----hhchHHHHH-HHHHHHHHHHHHHHhhhh----h-H-HHH--HHHHHHHHHhhhhhhhhhhhc
Q 015488          253 AELPGLLTAALLVD----RVGRKLSMT-IMFIFVCIFLLPLVTLQS----N-I-LLT--ALLSGARMFSMGTFIIANIFA  319 (406)
Q Consensus       253 ~~~~g~~~~~~l~d----r~grR~~~~-~~~~~~~~~~~~~~~~~~----~-~-~~~--~~~~~~~~~~~~~~~~~~~~~  319 (406)
                      ...+...+.|.++|    |+|||+.++ .+.+..++....+.....    . . ...  +.......+.........+..
T Consensus        49 ~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~  128 (428)
T PF13347_consen   49 WDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALI  128 (428)
T ss_pred             hhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcC
Confidence            33444457788899    789887765 455555555554443211    1 1 111  111111111122223456788


Q ss_pred             ccccCc-chhhHHHhHHHHhHhHHHHHHHHHHHHHhhhch-------hhHHHHHHHHHHHHHHHHHHhcccc
Q 015488          320 PEIYPT-SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-------QTAAILLLEALIVLSVVVILLIPFE  383 (406)
Q Consensus       320 ~El~p~-~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~e  383 (406)
                      +|+.+. +.|....+....++.+|+.+.+.+.+.+.+..+       ......+++++.+++.++..+..+|
T Consensus       129 ~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  129 PELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             ccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence            999985 689999999999999988766666665553322       2234456666767776676676666

>PRK11462 putative transporter; Provisional

Probab=97.49  E-value=0.0072  Score=59.30  Aligned_cols=132  Identities=14%  Similarity=0.103  Sum_probs=72.9

Q ss_pred             hhhhHHHHHHHHHHhh----hchHHHHH-HHHHHHHHHHHHHHhhh--h--hHHHHHHHH--HHHHHhhhhhhhhhhhcc
Q 015488          252 FAELPGLLTAALLVDR----VGRKLSMT-IMFIFVCIFLLPLVTLQ--S--NILLTALLS--GARMFSMGTFIIANIFAP  320 (406)
Q Consensus       252 ~~~~~g~~~~~~l~dr----~grR~~~~-~~~~~~~~~~~~~~~~~--~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~  320 (406)
                      +...+.-.+.|.++||    +|||+.++ .+.+..++....++...  +  .........  ....+........+.+.+
T Consensus        56 i~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~  135 (460)
T PRK11462         56 ALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGG  135 (460)
T ss_pred             HHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            3445667778899996    68876665 45455555444333211  1  111111111  111111222233466788


Q ss_pred             cccC-cchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhch-------hhHHHHHHHHHHHHHHHHHHhcccc
Q 015488          321 EIYP-TSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-------QTAAILLLEALIVLSVVVILLIPFE  383 (406)
Q Consensus       321 El~p-~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~e  383 (406)
                      |+-+ .+.|++..++-..++.+|+.+++.+..++....+       ......+++++.+++..+.++..+|
T Consensus       136 ~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE  206 (460)
T PRK11462        136 VITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKE  206 (460)
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhccee
Confidence            8888 5889999999999999988888777655554322       1122344555555555444444444

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=97.44  E-value=0.018  Score=53.21  Aligned_cols=133  Identities=19%  Similarity=0.094  Sum_probs=65.5

Q ss_pred             hhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhh--hhh---cccccCcchh
Q 015488          254 ELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIA--NIF---APEIYPTSMR  328 (406)
Q Consensus       254 ~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~El~p~~~R  328 (406)
                      +.+...+.|.+.||+|||+.-+..+++-++..+.........+...-..+ .......++..  |.+   -..=+|.+..
T Consensus        82 s~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~~~~~L~~GRvlg-GiaTSLLfS~FEsW~V~Eh~~~g~~~~~L  160 (354)
T PF05631_consen   82 SAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSSNYPVLLLGRVLG-GIATSLLFSAFESWMVHEHNKRGFPQEWL  160 (354)
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence            34444567789999999997766555544443322211111111111111 11111112221  221   1233666665


Q ss_pred             hHHHhHHHHh-HhHHHHHHHHHHHHHhhhch--hhHHHHHHHHHHHHHHHHHHhcccccCCc
Q 015488          329 STGAGVAYAV-GRIGGMVCPLVAVGLVTSCH--QTAAILLLEALIVLSVVVILLIPFETKGK  387 (406)
Q Consensus       329 ~~a~g~~~~~-~~~g~~~~p~~~~~l~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~et~~~  387 (406)
                      +...+..... +.+-++.+..+...+.+..+  ...||..-..+.+++.+++...-+|..|.
T Consensus       161 ~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~  222 (354)
T PF05631_consen  161 SDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD  222 (354)
T ss_pred             HHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence            6666655533 23445555555555544433  34677776666677766666555676554

>PRK10429 melibiose:sodium symporter; Provisional

Probab=97.43  E-value=0.0052  Score=60.55  Aligned_cols=104  Identities=12%  Similarity=0.017  Sum_probs=57.5

Q ss_pred             HHhhhhHHHHHHHHHHh----hhchHHH-HHHHHHHHHHHHHHHHhhh--hhH-HHHHHHHHH---HHHhhhhhhhhhhh
Q 015488          250 TSFAELPGLLTAALLVD----RVGRKLS-MTIMFIFVCIFLLPLVTLQ--SNI-LLTALLSGA---RMFSMGTFIIANIF  318 (406)
Q Consensus       250 ~~~~~~~g~~~~~~l~d----r~grR~~-~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~---~~~~~~~~~~~~~~  318 (406)
                      .-+...+...+.|.++|    |+|||+. ++.+...+++....++...  +.. .....+...   ..+...........
T Consensus        51 ~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al  130 (473)
T PRK10429         51 ARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSL  130 (473)
T ss_pred             HHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhh
Confidence            33455667777899999    5699554 4555555555444333211  111 111111111   11111222334567


Q ss_pred             ccccc-CcchhhHHHhHHHHhHhHHHHHHHHHHHHH
Q 015488          319 APEIY-PTSMRSTGAGVAYAVGRIGGMVCPLVAVGL  353 (406)
Q Consensus       319 ~~El~-p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l  353 (406)
                      .+|+- +.+.|....++...++.+|+.+.+.+..++
T Consensus       131 ~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~  166 (473)
T PRK10429        131 VPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPF  166 (473)
T ss_pred             hHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78988 478899999987777777766665554433

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.38  E-value=0.0026  Score=61.40  Aligned_cols=131  Identities=11%  Similarity=0.124  Sum_probs=86.0

Q ss_pred             HHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcch
Q 015488          248 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  327 (406)
Q Consensus       248 ~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~  327 (406)
                      ...-.+.++.....+.+.+|+|+-+++..++.....=++.+...++.|....+=+.........|.....|.+...|++.
T Consensus       413 a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l  492 (618)
T KOG3762|consen  413 ALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL  492 (618)
T ss_pred             hhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc
Confidence            34446788888999999999999998888765555545544445566554433333334445567777888899999999


Q ss_pred             hhHHHhHHHHhHh-HHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHH
Q 015488          328 RSTGAGVAYAVGR-IGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVIL  378 (406)
Q Consensus       328 R~~a~g~~~~~~~-~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~  378 (406)
                      |+++.|+....-. +|=.++.++.+.++...+....|-++++.|++.++...
T Consensus       493 ~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~  544 (618)
T KOG3762|consen  493 RATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFI  544 (618)
T ss_pred             hHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence            9999998877532 34344445544444444544556666666665554444

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.26  E-value=0.0026  Score=57.63  Aligned_cols=103  Identities=27%  Similarity=0.368  Sum_probs=75.8

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhccc--HHHHHHHHHHhhccCCcc-hhhHHHHHhhcCC-CcchhHHHHHHH-HHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPN--YISLLILRGLAGAGLGSG-HVFFSWFMEFVPP-SNRGKWMVVFST-FWTFGSV   75 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~--~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~-~~Rg~~~~~~~~-~~~~G~~   75 (406)
                      |||+.++.+.....++.++.++..+  ...+++.|+.+|++.|.. +....++.|+.|+ ++|+...+.... ...+|.+
T Consensus        67 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (338)
T COG0477          67 GRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLA  146 (338)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHH
Confidence            5677777777665666667777776  999999999999988865 4556778899998 778888888777 5778888


Q ss_pred             HHHHhhHHhcc--cchhHHHHHHhhHHHHH
Q 015488           76 SEAALAWIVMP--ILTWRWLLALSAIPAFV  103 (406)
Q Consensus        76 l~~~l~~~~~~--~~~Wr~~f~i~~ip~~~  103 (406)
                      +++.++..+..  ..+||+.|.+.......
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (338)
T COG0477         147 LGPLLAGLLLGALLWGWRAAFLLAALLGLL  176 (338)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            88766555432  35899977766555433

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.15  E-value=0.0044  Score=60.80  Aligned_cols=110  Identities=15%  Similarity=0.193  Sum_probs=85.4

Q ss_pred             hhhHHHHHHHHHHHHHHhh--------cccHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHHHHHHHHH
Q 015488            4 GSILGGALVTFVAGLLSAF--------SPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGS   74 (406)
Q Consensus         4 ~~~~~~~~~~~i~~~~~~~--------a~~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~   74 (406)
                      ++++.++++..+..+...+        .++-+.+.+.=++.|+..|+.. ..-++++|..|+++.+...+++...--...
T Consensus       350 ~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss  429 (477)
T PF11700_consen  350 RTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASS  429 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Confidence            6777777777666655555        6778889999999999999865 456789999999999999999999999999


Q ss_pred             HHHHHhhHHhcccch-hHHHHHHhhHHHHHHHHHHHhccC
Q 015488           75 VSEAALAWIVMPILT-WRWLLALSAIPAFVLLIFIVFMPE  113 (406)
Q Consensus        75 ~l~~~l~~~~~~~~~-Wr~~f~i~~ip~~~~~~~~~~~pE  113 (406)
                      .++|.+...+.+..| -|+-++...+..++.+++.+++++
T Consensus       430 ~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~  469 (477)
T PF11700_consen  430 WLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDV  469 (477)
T ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccc
Confidence            999998888765443 777776665555555555555544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=97.11  E-value=0.075  Score=49.24  Aligned_cols=114  Identities=18%  Similarity=0.190  Sum_probs=68.3

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcch-hhHHHH-HhhcCCCcchhHH-HHHHHHH----HHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWF-MEFVPPSNRGKWM-VVFSTFW----TFG   73 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~-~~~~~~-~E~~p~~~Rg~~~-~~~~~~~----~~G   73 (406)
                      |||+.-+..+++.+++++ +-..+++..|+++|++.|++...-. +.=+|+ .|.-..+.+..+. ..+....    .+-
T Consensus        97 Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~v  175 (354)
T PF05631_consen   97 GRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVV  175 (354)
T ss_pred             CchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHH
Confidence            799998888888888885 5667899999999999999987653 344564 5764433332322 2222111    122


Q ss_pred             HHHHHHhhHHhcccchh--HHHHHHhhHHHHHH-HHHHHhccCCc
Q 015488           74 SVSEAALAWIVMPILTW--RWLLALSAIPAFVL-LIFIVFMPESP  115 (406)
Q Consensus        74 ~~l~~~l~~~~~~~~~W--r~~f~i~~ip~~~~-~~~~~~~pESp  115 (406)
                      .+.+..++..+.+..+-  ..+|........+. .++....+|.+
T Consensus       176 AI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENy  220 (354)
T PF05631_consen  176 AIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENY  220 (354)
T ss_pred             HHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccC
Confidence            23444444444443333  66777766555554 33444556653

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.10  E-value=0.016  Score=55.86  Aligned_cols=139  Identities=17%  Similarity=0.095  Sum_probs=78.1

Q ss_pred             hhHHHHHHHHHHhh----hchHHHHH-HHHHHHHHHHHHHHhhhh----h-H-HHHHHHHHHHHHhhhhhhhhhhhcccc
Q 015488          254 ELPGLLTAALLVDR----VGRKLSMT-IMFIFVCIFLLPLVTLQS----N-I-LLTALLSGARMFSMGTFIIANIFAPEI  322 (406)
Q Consensus       254 ~~~g~~~~~~l~dr----~grR~~~~-~~~~~~~~~~~~~~~~~~----~-~-~~~~~~~~~~~~~~~~~~~~~~~~~El  322 (406)
                      -.+.-.+.|.++||    +|||+.++ .+.+..++.....+...+    . . .+.+..+....+.........++.+|+
T Consensus        61 DAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~i  140 (467)
T COG2211          61 DAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEI  140 (467)
T ss_pred             HHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhh
Confidence            34556677888895    67776654 454555554444433221    1 1 111112222222233334456677888


Q ss_pred             cCc-chhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchh---h-HHHHHHHHHHHHHHHHHHhcccccCCcccccc
Q 015488          323 YPT-SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQ---T-AAILLLEALIVLSVVVILLIPFETKGKELVNT  392 (406)
Q Consensus       323 ~p~-~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~---~-~~~~~~~~~~~i~~~~~~~~~~et~~~~~~~~  392 (406)
                      -+. +.|.+-.+.-..++.+|+++..++.+++++..+.   . .........++++.+..++.-..+|.|..+..
T Consensus       141 T~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~  215 (467)
T COG2211         141 TQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQ  215 (467)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccc
Confidence            766 7899999999999999999888888777654332   1 22333344445544444444445666665433

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=96.96  E-value=0.001  Score=61.20  Aligned_cols=109  Identities=13%  Similarity=0.112  Sum_probs=76.4

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhccc--H--HHHHHHHHHhhccCCcchhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPN--Y--ISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVS   76 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~--~--~~l~~~R~l~G~g~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l   76 (406)
                      |||+++..+.+++.++.++...+++  .  ..++.+|++.-.+.+   +.+.|.-|++|.+.|+...|.-....-+|.++
T Consensus       409 GRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fq---vaYvYtPEVyPTavRatgvGtcSsmaRIggI~  485 (528)
T KOG0253|consen  409 GRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQ---VAYVYTPEVYPTAVRATGVGTCSSMARIGGIF  485 (528)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchhe---EEEEecCcccchhhhhcchhhhhhHHhhhhhh
Confidence            7999999999999999977655543  2  346677776655544   44556679999999999999999999999999


Q ss_pred             HHHhhHHhcccchhHHHHHHhhHHHHHHHHHHHhccCC
Q 015488           77 EAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPES  114 (406)
Q Consensus        77 ~~~l~~~~~~~~~Wr~~f~i~~ip~~~~~~~~~~~pES  114 (406)
                      .|.++.- .+ .+=-.+..+.+...++..+..+++|--
T Consensus       486 ~p~iA~~-~e-~s~sl~i~vy~~~~ilagIavcffPiE  521 (528)
T KOG0253|consen  486 SPVIAMR-AE-LSTSLPIFVYGALFILAGIAVCFFPIE  521 (528)
T ss_pred             hhHHHHH-hc-cceeehHHHHHHHHHHHHHHheeeeec
Confidence            9999832 22 222223334444444555556666643

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=96.94  E-value=0.11  Score=49.92  Aligned_cols=46  Identities=20%  Similarity=0.261  Sum_probs=29.9

Q ss_pred             hHHHHHHHHhhhhHHHHHHHHHHhhhch-HHHHHHHHHHHHHHHHHH
Q 015488          243 VYINVFITSFAELPGLLTAALLVDRVGR-KLSMTIMFIFVCIFLLPL  288 (406)
Q Consensus       243 ~~~~~~~~~~~~~~g~~~~~~l~dr~gr-R~~~~~~~~~~~~~~~~~  288 (406)
                      +.....+..+..+++..+.|.++||.++ |+.+....+++++.+...
T Consensus        39 IG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~   85 (400)
T PF03825_consen   39 IGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL   85 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence            3444445557788899999999999854 555555555555544433

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.87  E-value=0.3  Score=47.76  Aligned_cols=41  Identities=7%  Similarity=-0.164  Sum_probs=37.4

Q ss_pred             hhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHh
Q 015488          314 IANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV  354 (406)
Q Consensus       314 ~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~  354 (406)
                      +.|.+.+|+++.+.-.+-.++....+++|.++++.+..++.
T Consensus       149 lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       149 LFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999998876654

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK09848 glucuronide transporter; Provisional

Probab=96.86  E-value=0.0062  Score=59.50  Aligned_cols=84  Identities=19%  Similarity=0.177  Sum_probs=61.0

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHhhccCCcch-hhHHHHHhhcCC-------CcchhHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSP--NYISLLILRGLAGAGLGSGH-VFFSWFMEFVPP-------SNRGKWMVVFSTFW   70 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~--~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~-------~~Rg~~~~~~~~~~   70 (406)
                      ++|+.+..+.++..++.++..+.+  +++.+++.-++.|+|.+... ...+...|..|.       +++|...+.++...
T Consensus       292 g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~  371 (448)
T PRK09848        292 GKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTR  371 (448)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHH
Confidence            467788888877777766665543  56777777888888887653 344455666654       35698999999999


Q ss_pred             HHHHHHHHHhhHHh
Q 015488           71 TFGSVSEAALAWIV   84 (406)
Q Consensus        71 ~~G~~l~~~l~~~~   84 (406)
                      .+|..+++.+...+
T Consensus       372 klg~aig~~i~g~~  385 (448)
T PRK09848        372 KCGQAIGGSIPAFI  385 (448)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999988877654

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=96.79  E-value=0.013  Score=56.87  Aligned_cols=132  Identities=25%  Similarity=0.233  Sum_probs=77.9

Q ss_pred             HHHHHHHHhhh-----chHHHHHHHHHHHHHHHHHHHhh-h---hhHHHHHHHHHHHHHhhhhhhhhhhhccccc---Cc
Q 015488          258 LLTAALLVDRV-----GRKLSMTIMFIFVCIFLLPLVTL-Q---SNILLTALLSGARMFSMGTFIIANIFAPEIY---PT  325 (406)
Q Consensus       258 ~~~~~~l~dr~-----grR~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~---p~  325 (406)
                      -.+.|.++|-+     .||+.++++.+++.+....+... .   +......+.+...+.....-...-....|..   |.
T Consensus        41 Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~  120 (433)
T PF03092_consen   41 KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE  120 (433)
T ss_pred             hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc
Confidence            35678999975     35555666666654443333321 1   1122222222222222222333444555654   44


Q ss_pred             chhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccCCcccc
Q 015488          326 SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELV  390 (406)
Q Consensus       326 ~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~~  390 (406)
                      + |+.-.+.+..+..+|++++..+.+++.+..+....+.+.+.+.++..+..+++.+|.+.++-+
T Consensus       121 ~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~~~~~~  184 (433)
T PF03092_consen  121 S-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEERKVRPAD  184 (433)
T ss_pred             h-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhccccccc
Confidence            4 778888888888889999888888777766555556677777777777777777774444433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.66  E-value=0.077  Score=51.54  Aligned_cols=139  Identities=17%  Similarity=0.174  Sum_probs=74.0

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhc--hHHHHHHHHHHHHHHHHHH-Hh-hhhhHHHHHHHHHHHHHhh--hhhhhhhhhc
Q 015488          246 NVFITSFAELPGLLTAALLVDRVG--RKLSMTIMFIFVCIFLLPL-VT-LQSNILLTALLSGARMFSM--GTFIIANIFA  319 (406)
Q Consensus       246 ~~~~~~~~~~~g~~~~~~l~dr~g--rR~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  319 (406)
                      .....+++-.+++++.++...|.+  ||++.. +.+++.+..+.. .. ...+.....++.+-.+...  +..+..-.|.
T Consensus        76 viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~-s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~  154 (488)
T KOG2325|consen   76 VIAASSLGHAIFSLIFGIWSNKTGSVKKPLIV-SFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYI  154 (488)
T ss_pred             HHHHHHHHHHhcchhhcccccccCCcccCHHH-HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHH
Confidence            344456778888899999999988  555444 444443322222 22 1111122223333222222  3334555666


Q ss_pred             ccccCcchhhHHHhHHHHhHhHHHHHHHHHHH---HHhhhc---------h-hhHHHHHHHHHHHHHHHHHHhcccccC
Q 015488          320 PEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAV---GLVTSC---------H-QTAAILLLEALIVLSVVVILLIPFETK  385 (406)
Q Consensus       320 ~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~---~l~~~~---------~-~~~~~~~~~~~~~i~~~~~~~~~~et~  385 (406)
                      +..--.+.|.+|.+...+.--+|.+++|.+..   .+.+..         + ...+-.++++..++..++..++..|..
T Consensus       155 a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~  233 (488)
T KOG2325|consen  155 ADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVY  233 (488)
T ss_pred             HhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecc
Confidence            76555666777766666644444455554332   232221         1 124567778888888888777665643

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=96.62  E-value=0.12  Score=52.90  Aligned_cols=123  Identities=17%  Similarity=0.144  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHhhh-chHHHHHHHHHHHHHHHHHHHhhh---h--hH-HHHHH--HHHHHHHhhhhhhhhhhhcccccCcc
Q 015488          256 PGLLTAALLVDRV-GRKLSMTIMFIFVCIFLLPLVTLQ---S--NI-LLTAL--LSGARMFSMGTFIIANIFAPEIYPTS  326 (406)
Q Consensus       256 ~g~~~~~~l~dr~-grR~~~~~~~~~~~~~~~~~~~~~---~--~~-~~~~~--~~~~~~~~~~~~~~~~~~~~El~p~~  326 (406)
                      +..++++++.|++ ||++.+.++.++..+....+....   .  .. ....+  +........++-+.......|.++.+
T Consensus        38 l~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~  117 (654)
T TIGR00926        38 LTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEER  117 (654)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCcc
Confidence            4456888999965 999988776555433222222110   0  00 11111  11111111222244555666777643


Q ss_pred             ---hhhHHHhHHHHhHhHHHHHHHHHHHHHhhhc-------hhhHHHHHHHHHHHHHHHHHH
Q 015488          327 ---MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC-------HQTAAILLLEALIVLSVVVIL  378 (406)
Q Consensus       327 ---~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~-------~~~~~~~~~~~~~~i~~~~~~  378 (406)
                         .|-....+.++.+++|+++++.+.+++.+..       +.+..|.+.+++++++.++..
T Consensus       118 ~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~  179 (654)
T TIGR00926       118 QLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFM  179 (654)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHH
Confidence               4788999999999999999998888765332       233455555566666555443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.58  E-value=0.79  Score=44.32  Aligned_cols=100  Identities=18%  Similarity=0.164  Sum_probs=62.4

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH----Hhhhhh--HHHHHHHHHHHHHh-hhhh---hhhh
Q 015488          247 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPL----VTLQSN--ILLTALLSGARMFS-MGTF---IIAN  316 (406)
Q Consensus       247 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~-~~~~---~~~~  316 (406)
                      -....+.++.|+++..++.+|+|..+.=+++...-..++...    ....++  ......++.+.... .|.+   -...
T Consensus       299 R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~  378 (432)
T PF06963_consen  299 RGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVT  378 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            345557788999999999999998877666554433333221    112211  22222222222211 2332   2345


Q ss_pred             hhcccccCcchhhHHHhHHHHhHhHHHHHH
Q 015488          317 IFAPEIYPTSMRSTGAGVAYAVGRIGGMVC  346 (406)
Q Consensus       317 ~~~~El~p~~~R~~a~g~~~~~~~~g~~~~  346 (406)
                      -+..|..|.+.|++-.|.-++..++...+.
T Consensus       379 qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~  408 (432)
T PF06963_consen  379 QIMQENVPESERGAVSGVQNSLQSLFELLS  408 (432)
T ss_pred             HhhcccCCHHHhhHHHHHHHHHHHHHHHHH
Confidence            677899999999999999999998866554

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.49  E-value=0.094  Score=49.95  Aligned_cols=105  Identities=16%  Similarity=0.168  Sum_probs=60.5

Q ss_pred             HhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH-HHhhh----hhHHHHHHHHHHHHHh-hhhhh--hhhhhcccc
Q 015488          251 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLP-LVTLQ----SNILLTALLSGARMFS-MGTFI--IANIFAPEI  322 (406)
Q Consensus       251 ~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~El  322 (406)
                      -+++++-.+.+.|+.||.|-|....++....++-... +....    +.....+...+..... ..++.  .+.-+..--
T Consensus        89 m~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~W  168 (480)
T KOG2563|consen   89 MVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVW  168 (480)
T ss_pred             HHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhh
Confidence            3556777788999999999999888776655442221 11111    1111111112221111 11111  122334456


Q ss_pred             cCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhh
Q 015488          323 YPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT  355 (406)
Q Consensus       323 ~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~  355 (406)
                      ||+..|++|..+..+.+.+|..++-.+-+.++.
T Consensus       169 F~~~qra~A~~~~v~~n~LGvavg~llppilV~  201 (480)
T KOG2563|consen  169 FPPDQRAIATVLGVMGNPLGVAVGFLLPPILVP  201 (480)
T ss_pred             CCcchhhhhhhHHHhcchHHHHHHhhccceecC
Confidence            999999999999999988887776555443443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=96.36  E-value=0.019  Score=54.70  Aligned_cols=106  Identities=20%  Similarity=0.219  Sum_probs=79.1

Q ss_pred             hhhHHHHHHHHHHHHHH---hhcccH------HHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCc---chhHHHHHHHHH
Q 015488            4 GSILGGALVTFVAGLLS---AFSPNY------ISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSN---RGKWMVVFSTFW   70 (406)
Q Consensus         4 ~~~~~~~~~~~i~~~~~---~~a~~~------~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~---Rg~~~~~~~~~~   70 (406)
                      |+++++.++..++.++.   +.-.+.      ..++++-++.++|.|+. +...+...|-+++++   |.....++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            57788888888888773   222233      57899999999999887 455667788877763   445567788899


Q ss_pred             HHHHHHHHHhhHHhcccchhHHHHHHhhHHHHHHHHHHH
Q 015488           71 TFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIV  109 (406)
Q Consensus        71 ~~G~~l~~~l~~~~~~~~~Wr~~f~i~~ip~~~~~~~~~  109 (406)
                      ++|.+++..+...+-+..+|.+.|++.++..++.+..++
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~  120 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFL  120 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHH
Confidence            999999988887777888999999998877766554443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=95.98  E-value=0.029  Score=54.46  Aligned_cols=106  Identities=16%  Similarity=0.142  Sum_probs=80.7

Q ss_pred             hhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHH-HHHHHHHHHHHHHhh
Q 015488            4 GSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVF-STFWTFGSVSEAALA   81 (406)
Q Consensus         4 ~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~-~~~~~~G~~l~~~l~   81 (406)
                      +++.+++..+.+=-+.-...+|.|+-.-.-+++|+..+... ...+|++..+||+.|..+.++. ..+..+|--+|++++
T Consensus       437 ~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIG  516 (618)
T KOG3762|consen  437 NVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIG  516 (618)
T ss_pred             ceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhh
Confidence            33444444444434455667899999999999999998875 4567899999999999998887 455688888999999


Q ss_pred             HHhcccchhHHHHHHhhHHHHHHHHHHH
Q 015488           82 WIVMPILTWRWLLALSAIPAFVLLIFIV  109 (406)
Q Consensus        82 ~~~~~~~~Wr~~f~i~~ip~~~~~~~~~  109 (406)
                      +.+....+=|..|.+.++-.++.+..+.
T Consensus       517 G~~v~~fg~~ttf~~~giAcl~~l~~~~  544 (618)
T KOG3762|consen  517 GFVVERFGARTTFRIFGIACLVTLALFI  544 (618)
T ss_pred             hhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence            9988888888888888777666544443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=95.73  E-value=0.19  Score=47.42  Aligned_cols=80  Identities=13%  Similarity=0.163  Sum_probs=52.0

Q ss_pred             hhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHH--HHHHHhcccccCCcc
Q 015488          311 TFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLS--VVVILLIPFETKGKE  388 (406)
Q Consensus       311 ~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~et~~~~  388 (406)
                      ..+......+|..|.+.|+.+.++....--+|-+++..+.+.+++........-++..+.++.  ..+...+..|.|..+
T Consensus       106 s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~  185 (403)
T PF03209_consen  106 SGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLNLIALWGQEPRRSR  185 (403)
T ss_pred             hHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcc
Confidence            345567788999999999999999999988888888888887777543222222222222222  122234556776665


Q ss_pred             cc
Q 015488          389 LV  390 (406)
Q Consensus       389 ~~  390 (406)
                      ..
T Consensus       186 ~~  187 (403)
T PF03209_consen  186 RA  187 (403)
T ss_pred             cc
Confidence            55

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=95.58  E-value=0.68  Score=41.02  Aligned_cols=55  Identities=15%  Similarity=0.302  Sum_probs=37.2

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHhhHHh-----cccchhHHHHHHhhHHHHHHHHHHHhc
Q 015488           57 SNRGKWMVVFSTFWTFGSVSEAALAWIV-----MPILTWRWLLALSAIPAFVLLIFIVFM  111 (406)
Q Consensus        57 ~~Rg~~~~~~~~~~~~G~~l~~~l~~~~-----~~~~~Wr~~f~i~~ip~~~~~~~~~~~  111 (406)
                      |+|+..+.+...++++|.++....-..-     ....+||+.+.+.++..++-++.+..+
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if   61 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF   61 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6778888888888999988765432111     113469999999887776655555544

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=95.47  E-value=3.6  Score=42.25  Aligned_cols=108  Identities=18%  Similarity=0.119  Sum_probs=70.8

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhccc--------HHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCc---chhHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPN--------YISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSN---RGKWMVVFST   68 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~--------~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~---Rg~~~~~~~~   68 (406)
                      ||++++.++.++..++-.+.+++..        ...++++=.+..+|.|+. +...+...|-.++++   |-.+..++..
T Consensus        52 G~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~  131 (654)
T TIGR00926        52 GKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYF  131 (654)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHH
Confidence            6888999999888888876665421        123445555555666664 334455666666543   4555667777


Q ss_pred             HHHHHHHHHHHhhHHhcc-------cchhHHHHHHhhHHHHHHHHHH
Q 015488           69 FWTFGSVSEAALAWIVMP-------ILTWRWLLALSAIPAFVLLIFI  108 (406)
Q Consensus        69 ~~~~G~~l~~~l~~~~~~-------~~~Wr~~f~i~~ip~~~~~~~~  108 (406)
                      +.++|.+++..+...+..       ..+|...|.+.++..++.++..
T Consensus       132 ~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf  178 (654)
T TIGR00926       132 AINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVF  178 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHH
Confidence            778888888777665542       3469999999887766654443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=95.42  E-value=0.27  Score=43.67  Aligned_cols=111  Identities=20%  Similarity=0.180  Sum_probs=71.8

Q ss_pred             hhhHHHHHHHHHHHHHHhh-------cccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHH
Q 015488            4 GSILGGALVTFVAGLLSAF-------SPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSV   75 (406)
Q Consensus         4 ~~~~~~~~~~~i~~~~~~~-------a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~   75 (406)
                      .++.++.+...++-.+...       .++++.+.+.-++.|.|.... .+......+.+| ++||...++.-.+..++..
T Consensus        67 ~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaa  145 (250)
T PF06813_consen   67 VVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAA  145 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHH
Confidence            3445555555554433322       246778888888777765432 222223346777 5799999999999999988


Q ss_pred             HHHHhhHHhcccchhHHHHHHhhHHHHHHHHHHHhccCCc
Q 015488           76 SEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESP  115 (406)
Q Consensus        76 l~~~l~~~~~~~~~Wr~~f~i~~ip~~~~~~~~~~~pESp  115 (406)
                      +-..+...+-+...-+.+..+...|.++.++..+++.+-|
T Consensus       146 i~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~  185 (250)
T PF06813_consen  146 IFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRPVP  185 (250)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence            8777766666556677777777778777665555554433

>TIGR01272 gluP glucose/galactose transporter

Probab=94.88  E-value=0.25  Score=45.70  Aligned_cols=75  Identities=19%  Similarity=0.294  Sum_probs=52.7

Q ss_pred             hhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhc----------------hhhHHHHHHHHHHHHHHH
Q 015488          312 FIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC----------------HQTAAILLLEALIVLSVV  375 (406)
Q Consensus       312 ~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~----------------~~~~~~~~~~~~~~i~~~  375 (406)
                      .+..+.+.+++.|.+.+++..++..++..+|.+++|.+...+....                +...+|.+++.+.++..+
T Consensus        28 q~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i  107 (310)
T TIGR01272        28 QVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLAI  107 (310)
T ss_pred             HhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566778888999999999999999999999999999998776321                223566656655444444


Q ss_pred             HHHhc-ccccCC
Q 015488          376 VILLI-PFETKG  386 (406)
Q Consensus       376 ~~~~~-~~et~~  386 (406)
                      ...+. .||.+.
T Consensus       108 ~~~~~~~p~~~~  119 (310)
T TIGR01272       108 IFAFLPLPELQE  119 (310)
T ss_pred             HHHHccCCCCCc
Confidence            43333 455443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=94.64  E-value=0.19  Score=41.10  Aligned_cols=82  Identities=15%  Similarity=0.139  Sum_probs=63.6

Q ss_pred             cchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcchh-hHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHh
Q 015488            2 EEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHV-FFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAAL   80 (406)
Q Consensus         2 rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~~-~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l   80 (406)
                      .|.+++++.+.+.+-... -+-++.+.++.+-.+.|+|.+.... -..++.|..++++|++..+++-.....+.+.|..+
T Consensus        66 ~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~  144 (156)
T PF05978_consen   66 PKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLF  144 (156)
T ss_pred             hHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            467777777777655543 3567788999999999999987644 34678899999999999988877777788888777


Q ss_pred             hHHh
Q 015488           81 AWIV   84 (406)
Q Consensus        81 ~~~~   84 (406)
                      .+++
T Consensus       145 ~~~~  148 (156)
T PF05978_consen  145 LFFI  148 (156)
T ss_pred             HHHH
Confidence            6654

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=94.45  E-value=1.4  Score=39.28  Aligned_cols=103  Identities=25%  Similarity=0.267  Sum_probs=58.4

Q ss_pred             hhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHhhhhhhhhhhhcccccCc-chh
Q 015488          252 FAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQS--NILLTALLSGARMFSMGTFIIANIFAPEIYPT-SMR  328 (406)
Q Consensus       252 ~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~-~~R  328 (406)
                      +....+....|.+.||.|||+.+..+...............+  ...................+....+.+|.+|. ..|
T Consensus        50 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  129 (338)
T COG0477          50 LGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATER  129 (338)
T ss_pred             HHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHH
Confidence            444556689999999999997776655432221111111111  11111111111222223445677888899998 678


Q ss_pred             hHHHhHHHH-hHhHHHHHHHHHHHHHh
Q 015488          329 STGAGVAYA-VGRIGGMVCPLVAVGLV  354 (406)
Q Consensus       329 ~~a~g~~~~-~~~~g~~~~p~~~~~l~  354 (406)
                      +...+.... ...++..++|.+.+.+.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (338)
T COG0477         130 GLAVGLVTLGAGALGLALGPLLAGLLL  156 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888887 45566777775554443

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=94.39  E-value=1.7  Score=35.65  Aligned_cols=98  Identities=12%  Similarity=0.052  Sum_probs=56.3

Q ss_pred             HhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchhhH
Q 015488          251 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRST  330 (406)
Q Consensus       251 ~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~  330 (406)
                      .....+++++++.+.+++|.|+.++++.+.-.+......... ............+.....+..-..+..|.-+.+.|++
T Consensus        47 Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~-~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~  125 (156)
T PF05978_consen   47 YGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPN-SYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGR  125 (156)
T ss_pred             HHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhh
Confidence            344566778889999999999999887665554443332222 1111111111112222234444556677777788887


Q ss_pred             HHhHHHHhHhHHHHHHHHH
Q 015488          331 GAGVAYAVGRIGGMVCPLV  349 (406)
Q Consensus       331 a~g~~~~~~~~g~~~~p~~  349 (406)
                      -.|+--.+...+.+++..+
T Consensus       126 ~~~ifw~i~~~s~i~G~~~  144 (156)
T PF05978_consen  126 NTGIFWAIFQSSLIFGNLF  144 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            7777666666555555443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=94.15  E-value=0.25  Score=46.76  Aligned_cols=112  Identities=17%  Similarity=0.225  Sum_probs=81.8

Q ss_pred             chhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhh
Q 015488            3 EGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALA   81 (406)
Q Consensus         3 r~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~   81 (406)
                      |+.+.++.++.++.++..-+...-..+.++=.+.|...|+.. ..-+|+.+..|+++-++..++++..--.+..++|.+.
T Consensus       318 k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv  397 (438)
T COG2270         318 KPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLV  397 (438)
T ss_pred             ceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHH
Confidence            567788888888888777677666777788889999998875 4567999999999999999999999999999999887


Q ss_pred             HHhccc-chhHHHHHHhhHHHHHHHHHHHhccCC
Q 015488           82 WIVMPI-LTWRWLLALSAIPAFVLLIFIVFMPES  114 (406)
Q Consensus        82 ~~~~~~-~~Wr~~f~i~~ip~~~~~~~~~~~pES  114 (406)
                      ..+.+. .+=|.-+....+...+-++....+|+.
T Consensus       398 ~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         398 AVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence            765432 234554443333333334445555543

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=93.91  E-value=4.8  Score=38.56  Aligned_cols=126  Identities=14%  Similarity=0.120  Sum_probs=64.1

Q ss_pred             HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHh
Q 015488          259 LTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAV  338 (406)
Q Consensus       259 ~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~  338 (406)
                      +....+.|.+|-|++++...+...+.-..+.+..+-.....+-+... ...++-...+.|.=-..|++.--++.+.+.+.
T Consensus        59 ~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg-~~~a~evay~sYiys~v~~~~yq~vts~~raa  137 (412)
T PF01770_consen   59 LPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYG-LATAAEVAYYSYIYSVVDKEHYQKVTSYTRAA  137 (412)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHH-HHHHHHHHHHHHheeecCHHHHHHHHHHHHHH
Confidence            45668899999999998876655544443333332211111111111 11122223344444556777767777777776


Q ss_pred             HhHHHHHHHHHHHHHhhhch-hhHHH-HHHHHHHHHHHHHHHhcccccC
Q 015488          339 GRIGGMVCPLVAVGLVTSCH-QTAAI-LLLEALIVLSVVVILLIPFETK  385 (406)
Q Consensus       339 ~~~g~~~~p~~~~~l~~~~~-~~~~~-~~~~~~~~i~~~~~~~~~~et~  385 (406)
                      .-+|.+++..+...+....+ ..... .+-.+...++.++.+++|+.+|
T Consensus       138 ~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~  186 (412)
T PF01770_consen  138 TLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKR  186 (412)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence            66666666555443333222 22122 2222444555566667665443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF12832 MFS_1_like: MFS_1 like family

Probab=91.26  E-value=3.3  Score=29.30  Aligned_cols=36  Identities=14%  Similarity=0.132  Sum_probs=27.0

Q ss_pred             hHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHH
Q 015488          243 VYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF  278 (406)
Q Consensus       243 ~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~  278 (406)
                      +.....+.-+..+++..+.|.++||.+|++......
T Consensus        37 iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~   72 (77)
T PF12832_consen   37 IGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGS   72 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHH
Confidence            334444455778889999999999999998776543

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=89.67  E-value=1.4  Score=41.95  Aligned_cols=64  Identities=23%  Similarity=0.211  Sum_probs=54.4

Q ss_pred             hhcccHHHHHHHHHHhhccCCcchhh-HHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhHHh
Q 015488           21 AFSPNYISLLILRGLAGAGLGSGHVF-FSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIV   84 (406)
Q Consensus        21 ~~a~~~~~l~~~R~l~G~g~g~~~~~-~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~   84 (406)
                      -+.+|.+..++.-+..|+..|..++. +..+.|-.|+++|-..++....+-++|.++++.++..+
T Consensus       330 ~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  330 RFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            45688999999999999988887764 44567888999999999999999999999999887654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=87.76  E-value=30  Score=34.20  Aligned_cols=37  Identities=11%  Similarity=0.072  Sum_probs=31.8

Q ss_pred             HHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhHHhcc
Q 015488           50 FMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMP   86 (406)
Q Consensus        50 ~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~~~   86 (406)
                      ..|.++.++=.|..++++.+-++|.++++.+...+.+
T Consensus       169 AN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  169 ANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999998887766544

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=87.59  E-value=3.3  Score=39.31  Aligned_cols=66  Identities=15%  Similarity=0.121  Sum_probs=48.8

Q ss_pred             hhhhhhcccccCcc---hhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHH
Q 015488          313 IIANIFAPEIYPTS---MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVIL  378 (406)
Q Consensus       313 ~~~~~~~~El~p~~---~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~  378 (406)
                      +......+|.|+.+   .|..+..+-+...++|+.+++...+++.+..+.+..|.+.++..+++.+..+
T Consensus        52 ~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~  120 (372)
T PF00854_consen   52 PNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFL  120 (372)
T ss_dssp             HHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHH
Confidence            45566777888775   5788888999999999999988888877766666667776666666655443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=86.56  E-value=29  Score=32.70  Aligned_cols=128  Identities=16%  Similarity=0.086  Sum_probs=68.0

Q ss_pred             HHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchh
Q 015488          249 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  328 (406)
Q Consensus       249 ~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R  328 (406)
                      +..++--..+.....+.+|+|-++.+..+++...+-... -...+......-.......+...+.......-|-||.++ 
T Consensus        55 LPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~i-R~~~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-  132 (395)
T COG2807          55 LPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILI-RSLGGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-  132 (395)
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-
Confidence            333444445667788889999888777665443332211 111111111111111111111223334455668888875 


Q ss_pred             hHHHhHHHHhHhHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHHHHHHHH
Q 015488          329 STGAGVAYAVGRIGGMVCPLVAVGLVTSC-HQTAAILLLEALIVLSVVVIL  378 (406)
Q Consensus       329 ~~a~g~~~~~~~~g~~~~p~~~~~l~~~~-~~~~~~~~~~~~~~i~~~~~~  378 (406)
                      +..+|+-...-.+++.+++-+..++-+.. +......+++..++++.++.+
T Consensus       133 ~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~Wl  183 (395)
T COG2807         133 GLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWL  183 (395)
T ss_pred             hhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHh
Confidence            45556666666666667766666655443 345667778888877766543

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=85.94  E-value=26  Score=31.60  Aligned_cols=53  Identities=21%  Similarity=0.300  Sum_probs=36.3

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcch-hhHHH-HHhhc
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSW-FMEFV   54 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~~-~~~~~-~~E~~   54 (406)
                      |||++=..-++.+++++ ++-.+|.|..++++|.+-|++...-. ..-+| +.|.-
T Consensus       100 GRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHn  154 (454)
T KOG4332|consen  100 GRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHN  154 (454)
T ss_pred             ccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhh
Confidence            57776555555555444 46778899999999999999876543 33355 45765

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=84.15  E-value=46  Score=32.95  Aligned_cols=42  Identities=14%  Similarity=-0.056  Sum_probs=37.0

Q ss_pred             hhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhh
Q 015488          314 IANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT  355 (406)
Q Consensus       314 ~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~  355 (406)
                      ..|.+.+|.++.+.-.+-.++....+++|.++++.+..++.+
T Consensus       164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999998887765544

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=83.75  E-value=53  Score=33.29  Aligned_cols=119  Identities=14%  Similarity=0.167  Sum_probs=71.7

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhccc-------------------------HHHHHHHHHHhhccCCcc-hhhHHHHHhhc
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPN-------------------------YISLLILRGLAGAGLGSG-HVFFSWFMEFV   54 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~-------------------------~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~   54 (406)
                      ||-.++.++.++..++..+..++..                         ...++...-+..+|.|+. +....+-+|-.
T Consensus       102 gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQf  181 (571)
T KOG1237|consen  102 GRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQF  181 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhccccc
Confidence            4666777777777777533221111                         124555555666677664 33334444544


Q ss_pred             C----CCcch--hHHHHHHHHHHHHHHHHHHhhHHhcccchhHHHHHHhhHHHHHHHHHHHhccCCcchhhcc
Q 015488           55 P----PSNRG--KWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTK  121 (406)
Q Consensus        55 p----~~~Rg--~~~~~~~~~~~~G~~l~~~l~~~~~~~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~  121 (406)
                      +    ++.++  ....++....+.|.+++..+-..+-+..+|.+-|.+..+.-.+.++  .+++-+|.|-..+
T Consensus       182 d~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~--iF~~g~~~y~~~~  252 (571)
T KOG1237|consen  182 DELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAIL--IFLPGFPFYRYKK  252 (571)
T ss_pred             CccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHH--HHHcCceeEEeeC
Confidence            4    33344  5567888888999888776555554678999999887666544433  3456666666554

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=83.05  E-value=21  Score=34.62  Aligned_cols=88  Identities=18%  Similarity=0.125  Sum_probs=52.7

Q ss_pred             CcchhhHH-HHHHHHHHHHHHhhcccHHH------------HHHHHHHhhccC---Cc---chhhHHHHHhhcCCCcchh
Q 015488            1 MEEGSILG-GALVTFVAGLLSAFSPNYIS------------LLILRGLAGAGL---GS---GHVFFSWFMEFVPPSNRGK   61 (406)
Q Consensus         1 ~rr~~~~~-~~~~~~i~~~~~~~a~~~~~------------l~~~R~l~G~g~---g~---~~~~~~~~~E~~p~~~Rg~   61 (406)
                      |||+.++. ......++.++.+++..+..            .-+.-++.|+..   ..   ....-.++.+...+++|.+
T Consensus        99 GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~  178 (498)
T KOG0637|consen   99 GRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKT  178 (498)
T ss_pred             ccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhh
Confidence            67777666 44555566678888776544            333444455432   11   1123346777766655555


Q ss_pred             -HHHHHHHHHHHHHHHHHHhhHHhcccchhHH
Q 015488           62 -WMVVFSTFWTFGSVSEAALAWIVMPILTWRW   92 (406)
Q Consensus        62 -~~~~~~~~~~~G~~l~~~l~~~~~~~~~Wr~   92 (406)
                       +.+++..+..+|..++..+.    .+.+|+-
T Consensus       179 ~Ans~f~~f~avGnvLGY~~g----~y~~~~~  206 (498)
T KOG0637|consen  179 RANSVFSFFMAVGNVLGYALG----SYLGLYK  206 (498)
T ss_pred             ccchhHHHHHHhcceeeeecc----cccCceE
Confidence             88899999998888766544    3445654

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=82.10  E-value=55  Score=32.27  Aligned_cols=37  Identities=3%  Similarity=-0.032  Sum_probs=32.2

Q ss_pred             HHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhHHhc
Q 015488           49 WFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVM   85 (406)
Q Consensus        49 ~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~~   85 (406)
                      +..|.++.++=.|..+++..+-++|.++++.+...+.
T Consensus       153 fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       153 FANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3679999999999999999999999999998776653

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	406
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		3e-05

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 90  WRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKI 134
           WR++ A   IPA + L+ +  +PESPR+L ++G+   A  IL KI
Sbjct: 199 WRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKI 243
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	406
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	7e-09

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 56.2 bits (136), Expect = 7e-09
 Identities = 61/397 (15%), Positives = 115/397 (28%), Gaps = 82/397 (20%)

Query: 5   SILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-----VFFSWFMEFVPPSNR 59
            ++  A V    G +   + +   + +L  L G   G G          W+        R
Sbjct: 98  GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW----SQKER 153

Query: 60  GKWMVVFSTFWTFGSVSEAALAWIVMPILT-WRWLLALSAIPAFVLLIFI-VFMPESPRY 117
           G  + V++     G      L  + M     W   L + A  A ++ +F    M ++P+ 
Sbjct: 154 GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ- 212

Query: 118 LCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTV 177
                                   LP      +   D   E +  E T            
Sbjct: 213 ---------------------SCGLPPIEEYKNDYPDDYNEKAEQELTA----------- 240

Query: 178 RKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYY--------GIVLLASELSGSQSKCS 229
                     +   +       LW +   N FVY             L      +  K S
Sbjct: 241 ---KQIFMQYVLPNKL------LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSS 291

Query: 230 SSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCI-----F 284
            +  L E               +A +PG L    + D+V R         F+ +      
Sbjct: 292 WAYFLYE---------------YAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATI 336

Query: 285 LLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGM 344
           +  +    +  +    +        G  ++  + A E+ P     T AG     G +GG 
Sbjct: 337 VYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS 396

Query: 345 VC-PLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI 380
           V    +    V         +++    +L+V++++++
Sbjct: 397 VAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	406
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.95
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.93
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.9
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.85
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.81
2xut_A	524	Proton/peptide symporter family protein; transport	99.8
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.36
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.27
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.26
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.13
2xut_A	524	Proton/peptide symporter family protein; transport	99.09
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.72
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.14

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=3e-41  Score=331.37  Aligned_cols=357  Identities=22%  Similarity=0.282  Sum_probs=250.7

Q ss_pred             CcchhhHHHHHHHHHHHHHHh------------------hcccHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchh
Q 015488            1 MEEGSILGGALVTFVAGLLSA------------------FSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGK   61 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~------------------~a~~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~   61 (406)
                      |||++++++.+++.+++++++                  +++|+++++++|+++|+|.|+.. +...|++|++|+++||+
T Consensus        83 GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~  162 (491)
T 4gc0_A           83 GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGK  162 (491)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhh
Confidence            799999999999999999998                  48899999999999999998864 56778999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHhc--------ccchhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHH
Q 015488           62 WMVVFSTFWTFGSVSEAALAWIVM--------PILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDK  133 (406)
Q Consensus        62 ~~~~~~~~~~~G~~l~~~l~~~~~--------~~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~  133 (406)
                      ..++.+.++.+|.++++.+++...        ..+.||+++.+..+|.++.++.++++||||+||..|+|.||+++.+++
T Consensus       163 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~  242 (491)
T 4gc0_A          163 LVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRK  242 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHH
Confidence            999999999999999988877653        235799999999999999888999999999999999999999999998


Q ss_pred             HHHHcCCCCCCCCCcCCCCCCcccccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHH
Q 015488          134 IAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYG  213 (406)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (406)
                      ..+.+..+               ++..  +.+.... ..      ++.. .....+..+  +.....+...+.+...++.
T Consensus       243 ~~~~~~~~---------------~~~~--~~~~~~~-~~------~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  295 (491)
T 4gc0_A          243 IMGNTLAT---------------QAVQ--EIKHSLD-HG------RKTG-GRLLMFGVG--VIVIGVMLSIFQQFVGINV  295 (491)
T ss_dssp             HHHHHHHH---------------HHHH--HHHHHHH-HH------HHHT-THHHHSCCT--HHHHHHHHHHHHHHTCHHH
T ss_pred             hcCCchhH---------------HHHH--HHHHHHH-hh------hhhh-hHHHHhccc--HHHHHHHHHHHHHHhhhhH
Confidence            87643211               0000  0000000 00      0000 011111111  1111122222222222223


Q ss_pred             HHHHHHhhhccCCCCCcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh---
Q 015488          214 IVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT---  290 (406)
Q Consensus       214 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~---  290 (406)
                      ...+.+.+....           ..............++..++++++++++.||+|||+.++.+.....++++.+..   
T Consensus       296 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~  364 (491)
T 4gc0_A          296 VLYYAPEVFKTL-----------GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY  364 (491)
T ss_dssp             HHHHHHHHHHHS-----------SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcchHHHHhc-----------CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh
Confidence            333333222110           111223344556667888999999999999999999998877666655443332   


Q ss_pred             hh-hhHHHH-HHHHHHHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhc------hhhHH
Q 015488          291 LQ-SNILLT-ALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC------HQTAA  362 (406)
Q Consensus       291 ~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~------~~~~~  362 (406)
                      .. ...... ........+..+..++.|.+.+|+||+++|+++.|++++++++++++++++.+.+.+..      +....
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~  444 (491)
T 4gc0_A          365 TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFS  444 (491)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHH
T ss_pred             cccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence            11 112221 22222233344556778999999999999999999999999999999998887664422      22346


Q ss_pred             HHHHHHHHHHHHHHHHhcccccCCccccccccc
Q 015488          363 ILLLEALIVLSVVVILLIPFETKGKELVNTIDG  395 (406)
Q Consensus       363 ~~~~~~~~~i~~~~~~~~~~et~~~~~~~~~~~  395 (406)
                      +++++++++++.++.+++.||||||++||+++.
T Consensus       445 ~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~  477 (491)
T 4gc0_A          445 YWIYGCMGVLAALFMWKFVPETKGKTLEELEAL  477 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHheecCCCCCCHHHHHHH
Confidence            788999999999999999999999999998764

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.95  E-value=5.4e-26  Score=220.04  Aligned_cols=329  Identities=15%  Similarity=0.191  Sum_probs=217.6

Q ss_pred             CcchhhHHHHHHHHHHHHHHhh----cccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAF----SPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSV   75 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~----a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~   75 (406)
                      +||+.++++.++..++.++.++    ++|++.++++|++.|++.|.. +....++.|++|+++|++..++.+.+..+|.+
T Consensus        90 g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~  169 (451)
T 1pw4_A           90 NPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG  169 (451)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHT
T ss_pred             CchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHH
Confidence            6899999999999999999999    999999999999999998865 45667899999999999999999999999999


Q ss_pred             HHHHhhHHhcccch-hHHHHHHhhHHHHHH-HHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCC
Q 015488           76 SEAALAWIVMPILT-WRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTN  153 (406)
Q Consensus        76 l~~~l~~~~~~~~~-Wr~~f~i~~ip~~~~-~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  153 (406)
                      +++.++..+.+..+ ||+.|++.+++.++. ++..+++||+|++...+.+.++                       +.+.
T Consensus       170 ~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~  226 (451)
T 1pw4_A          170 IPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-----------------------KNDY  226 (451)
T ss_dssp             SHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-----------------------CCC-
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh-----------------------cccc
Confidence            99999987767777 999999988877664 4556788999875322111000                       0000


Q ss_pred             CcccccccCCccccchhhhccccccccccch--hhhccC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCc
Q 015488          154 DLDEEFSTSEETPLLSSARKRTTVRKSGFSS--FLMLFS-PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSS  230 (406)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  230 (406)
                      +.++  ++.++         +    +...++  ....++ ++.+    ...+..+.....+++...+.|.+..+.     
T Consensus       227 ~~~~--~~~~~---------~----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  282 (451)
T 1pw4_A          227 PDDY--NEKAE---------Q----ELTAKQIFMQYVLPNKLLW----YIAIANVFVYLLRYGILDWSPTYLKEV-----  282 (451)
T ss_dssp             ---------------------------CCTHHHHHHTSSCHHHH----HHHHHHHHHHHHHHHHHHHHHHHBTTB-----
T ss_pred             cccc--hhhhh---------c----ccccccchHHHHHcCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence            0000  00000         0    000001  112222 2222    222333333444445544544443211     


Q ss_pred             ccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhh--chHHHHHHHHHHHH-HHHHHHHhhh--hhHHHHHHHHHHH
Q 015488          231 SILLSENVQDASVYINVFITSFAELPGLLTAALLVDRV--GRKLSMTIMFIFVC-IFLLPLVTLQ--SNILLTALLSGAR  305 (406)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~--grR~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~  305 (406)
                           .+..............++.+++.++.+++.||+  |||+.+..+..+.. +....+....  +............
T Consensus       283 -----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  357 (451)
T 1pw4_A          283 -----KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIG  357 (451)
T ss_dssp             -----SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHH
T ss_pred             -----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence                 011112222334455677889999999999999  99998877655544 3333222221  2222222222333


Q ss_pred             HHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhH-HHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcc
Q 015488          306 MFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRI-GGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIP  381 (406)
Q Consensus       306 ~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~-g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  381 (406)
                      ++..+..+..+.+..|.+|++.|+++.|+.+.+.++ |+.++|.+.+.+.+..+....+.+.+++++++.++..+..
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          358 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            333445566678899999999999999999999999 9999999999888876666677777888887777666654

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.93  E-value=2.7e-23  Score=200.33  Aligned_cols=304  Identities=13%  Similarity=0.068  Sum_probs=196.6

Q ss_pred             CcchhhHHHHHHHHHHHHHH---hhcccHHHHHHHHHHhhccCCcch-hhHHHHHhhcCCCcchhHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLS---AFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVS   76 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~---~~a~~~~~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l   76 (406)
                      |||+.++.+.++..++.++.   ++++|++.+++.|++.|++.|... ....++.|+.|+++|++..++.+.+..+|.++
T Consensus        89 g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  168 (438)
T 3o7q_A           89 SYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAII  168 (438)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999   899999999999999999998764 56778999999999999999999999999999


Q ss_pred             HHHhhHHhc-ccch-------------------------hHHHHHHhhHHHHHHHHHHHh--ccCCcchhhccCChhhHH
Q 015488           77 EAALAWIVM-PILT-------------------------WRWLLALSAIPAFVLLIFIVF--MPESPRYLCTKGRITDAH  128 (406)
Q Consensus        77 ~~~l~~~~~-~~~~-------------------------Wr~~f~i~~ip~~~~~~~~~~--~pESp~~l~~~~~~~~a~  128 (406)
                      ++.++..+. +..+                         ||+.|++.+++.++..+..++  .||+++...         
T Consensus       169 g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---------  239 (438)
T 3o7q_A          169 AVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNH---------  239 (438)
T ss_dssp             HHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCC---------
T ss_pred             HHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccc---------
Confidence            999988776 4433                         999998877666554433333  455543100         


Q ss_pred             HHHHHHHHHcCCCCCCCCCcCCCCCCcccccccCCccccchhhhccccccccccchhhhccC-hhhHHHHHHHHHHHHHH
Q 015488          129 NILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS-PRFFKTTILLWVLYFGN  207 (406)
Q Consensus       129 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  207 (406)
                                                 ++    ++++.              ....++++++ |+.+.... .   .+..
T Consensus       240 ---------------------------~~----~~~~~--------------~~~~~~~~~~~~~~~~~~~-~---~~~~  270 (438)
T 3o7q_A          240 ---------------------------SD----AKQGS--------------FSASLSRLARIRHWRWAVL-A---QFCY  270 (438)
T ss_dssp             ---------------------------CC----SSTTS--------------HHHHHHHHTTCSHHHHHHH-H---HHHH
T ss_pred             ---------------------------cc----ccccc--------------hhhhHHHHHhChHHHHHHH-H---HHHH
Confidence                                       00    00000              0001222332 33332222 2   1122


Q ss_pred             HHHHHHHHHHHHhh-hccCCCCCcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q 015488          208 SFVYYGIVLLASEL-SGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLL  286 (406)
Q Consensus       208 ~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~  286 (406)
                      ...+++...+.+.+ ..+.          .+..............++.+++.++++++.||+|||+.+..+.++..+...
T Consensus       271 ~~~~~~~~~~~~~~~~~~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~  340 (438)
T 3o7q_A          271 VGAQTACWSYLIRYAVEEI----------PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCL  340 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHS----------TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcc----------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            22222322222322 1110          001111222333444577888999999999999999999887766666554


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhch-hhHHHHH
Q 015488          287 PLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-QTAAILL  365 (406)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~-~~~~~~~  365 (406)
                      ......+...... .....++....++..+.+..|.+|++ |+++.++.. .+.+++.++|.+.+.+.+..+ ....+.+
T Consensus       341 ~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~  417 (438)
T 3o7q_A          341 ISAFAGGHVGLIA-LTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELI  417 (438)
T ss_dssp             HHHHCCHHHHHHH-HHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHH
T ss_pred             HHHHcCCcHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            4443333222222 22233334455677888889999987 899998877 778999999999998888766 4455555


Q ss_pred             HHHHHHHHHH
Q 015488          366 LEALIVLSVV  375 (406)
Q Consensus       366 ~~~~~~i~~~  375 (406)
                      .+++.++..+
T Consensus       418 ~~~~~~~~~~  427 (438)
T 3o7q_A          418 PALCFAVIFI  427 (438)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5544444433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.90  E-value=1.9e-22  Score=197.52  Aligned_cols=356  Identities=12%  Similarity=0.014  Sum_probs=190.8

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCc--chhHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSN--RGKWMVVFSTFWTFGSVSE   77 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~--Rg~~~~~~~~~~~~G~~l~   77 (406)
                      |||+.++.+.++..++.++.++++|++.++++|++.|++.|.. +....++.|++|+++  |+...+.++.+..+|..++
T Consensus        83 g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  162 (491)
T 4aps_A           83 GARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIA  162 (491)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHH
Confidence            6999999999999999999999999999999999999998875 456678899999999  6777888999999999999


Q ss_pred             HHhhHHhcccchhHHHHHHhhHHHHHHHHHHHh-ccCCcc----hhhccCChhhHHHHHHH--------------HHHHc
Q 015488           78 AALAWIVMPILTWRWLLALSAIPAFVLLIFIVF-MPESPR----YLCTKGRITDAHNILDK--------------IAQFN  138 (406)
Q Consensus        78 ~~l~~~~~~~~~Wr~~f~i~~ip~~~~~~~~~~-~pESp~----~l~~~~~~~~a~~~l~~--------------~~~~~  138 (406)
                      +.++..+.+..+||+.|++.++..++..+..+. .|+..+    -...+.+.++.++..++              ....+
T Consensus       163 ~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~  242 (491)
T 4aps_A          163 PLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVG  242 (491)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999998888889999999987766555443332 222111    00111122233332222              11111


Q ss_pred             CCCCCCCCCcCCCCCCcccccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHH----H
Q 015488          139 QTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYG----I  214 (406)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  214 (406)
                      +.+             .++.....................+.....  ....++.. ....++...+.....+..    .
T Consensus       243 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  306 (491)
T 4aps_A          243 WNS-------------LPAYINLLTIVAIAIPVFYFAWMISSVKVT--STEHLRVV-SYIPLFIAAVLFWAIEEQGSVVL  306 (491)
T ss_dssp             SCC-------------TTHHHHHHHHHHHHHHHHHHHHHC--------------CT-THHHHHHHHHHHHHHHGGGGTHH
T ss_pred             Ccc-------------cccchhhhhHHHHHHHHHHHHHHhhccccc--HHHHHHHH-HHHHHHHHHHHHHHHHhhccHHH
Confidence            100             000000000000000000000000000000  00000000 011111111111111111    1


Q ss_pred             HHHHHhhhccCCCCCcccccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHH-----HHHHHHHHHHHHHH
Q 015488          215 VLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMT-----IMFIFVCIFLLPLV  289 (406)
Q Consensus       215 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~-----~~~~~~~~~~~~~~  289 (406)
                      ..+.......            +.....  .......+..+++..+.+++.||+|||+...     .+..+..+....+.
T Consensus       307 ~~~~~~~~~~------------~~~~~~--~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~  372 (491)
T 4aps_A          307 ATFAAERVDS------------SWFPVS--WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMA  372 (491)
T ss_dssp             HHHHHHSCCC------------SSSCSG--GGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTH
T ss_pred             HHHHHHHhcc------------CccCHH--HHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHH
Confidence            1111111100            000001  1112233455667788899999999986543     33333333322222


Q ss_pred             hhh---------hhHHHHHHHHHHHHHhhhhhhhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhh
Q 015488          290 TLQ---------SNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQT  360 (406)
Q Consensus       290 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~  360 (406)
                      ...         +............+......+..+.+..|.+|++.|+++.|+.+...++|+.++|.+.+.+.+ .+..
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~  451 (491)
T 4aps_A          373 IPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEV  451 (491)
T ss_dssp             HHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTT
T ss_pred             HHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHH
Confidence            111         112222222222222233356678899999999999999999999999999999998775544 3444


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccccCCc
Q 015488          361 AAILLLEALIVLSVVVILLIPFETKGK  387 (406)
Q Consensus       361 ~~~~~~~~~~~i~~~~~~~~~~et~~~  387 (406)
                      ..+.++++++++++++.+++.++++++
T Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (491)
T 4aps_A          452 AYFSYFGLGSVVLGIVLVFLSKRIQGL  478 (491)
T ss_dssp             HHHHHTHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567788888888888888887777665

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.85  E-value=5.5e-21  Score=180.53  Aligned_cols=285  Identities=14%  Similarity=0.097  Sum_probs=177.3

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   79 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   79 (406)
                      +||+.++.+.++..++..+.++++|++.+++.|++.|++.+.. +....++.|+.|+++|++..+..+.+..+|.++++.
T Consensus        63 g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  142 (375)
T 2gfp_A           63 GRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPL  142 (375)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            6999999999999999999999999999999999999998865 455678899999999999999999999999999999


Q ss_pred             hhHHhcccchhHHHHHHhhHHHHHHHH-HHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCCCcccc
Q 015488           80 LAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEE  158 (406)
Q Consensus        80 l~~~~~~~~~Wr~~f~i~~ip~~~~~~-~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (406)
                      ++..+.+..+||+.|++.++..++..+ ..+.+||+|+...++                                  ++ 
T Consensus       143 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~-  187 (375)
T 2gfp_A          143 IGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPR----------------------------------TR-  187 (375)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCC----------------------------------CC-
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCccc----------------------------------cc-
Confidence            999988888999999998887766544 556678876521000                                  00 


Q ss_pred             cccCCccccchhhhccccccccccchhhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccC
Q 015488          159 FSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSEN  237 (406)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  237 (406)
                          +               ++   +++..+ +|+.+    ...+..+.....+++...+.|.+..+.          .+
T Consensus       188 ----~---------------~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g  231 (375)
T 2gfp_A          188 ----L---------------LT---SYKTLFGNSGFN----CYLLMLIGGLAGIAAFEACSGVLMGAV----------LG  231 (375)
T ss_dssp             ----T---------------TT---CSTHHHHHHHHH----HHHHHHHHHHHHHHHHHHHCSCSSHHH----------HH
T ss_pred             ----H---------------HH---HHHHHhcCcchH----HHHHHHHHHHHHHHHHHHHHHHHHHHH----------hC
Confidence                0               00   001111 12211    222222223333333333333221100          00


Q ss_pred             ccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHH-HHHHHHHHHHHh-hh-hhHHHHHHHHHHHHHhhhhhhh
Q 015488          238 VQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVT-LQ-SNILLTALLSGARMFSMGTFII  314 (406)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~  314 (406)
                      ..............++.+++..+.+++.||.|||....... ...+........ .. +.+..........+......+.
T Consensus       232 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~  311 (375)
T 2gfp_A          232 LSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPL  311 (375)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSST
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHH
Confidence            00111112223334556667777777778777733222211 111111111111 11 2222212222222233334566


Q ss_pred             hhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhc
Q 015488          315 ANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC  357 (406)
Q Consensus       315 ~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~  357 (406)
                      ...+..|.+| +.|+++.|+.+....+|+.++|.+.+.+.+..
T Consensus       312 ~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  353 (375)
T 2gfp_A          312 ATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTG  353 (375)
T ss_dssp             THHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH
T ss_pred             HHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            7788899999 89999999999999999999998887765543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.81  E-value=2.9e-19  Score=171.44  Aligned_cols=332  Identities=12%  Similarity=0.062  Sum_probs=178.4

Q ss_pred             CcchhhHHHHHHHHHHH---HHHhhcccHH-HHHHHHHHhhccCCcch-hhHHHHHhhcCC--CcchhHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAG---LLSAFSPNYI-SLLILRGLAGAGLGSGH-VFFSWFMEFVPP--SNRGKWMVVFSTFWTFG   73 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~---~~~~~a~~~~-~l~~~R~l~G~g~g~~~-~~~~~~~E~~p~--~~Rg~~~~~~~~~~~~G   73 (406)
                      |||+.++.+..+..++.   ...++++... .+...|++.|++.|... .......++.++  ++|+...+....+..+|
T Consensus        71 Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g  150 (417)
T 2cfq_A           71 GLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVG  150 (417)
T ss_dssp             TTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHH
Confidence            69999988877765432   1122333221 24566777777665432 122223333332  45676677777777888


Q ss_pred             HHHHHHhhHHhcccchhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCC
Q 015488           74 SVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTN  153 (406)
Q Consensus        74 ~~l~~~l~~~~~~~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  153 (406)
                      ..+++.++..+.+ .+||+.|++.+++.++..+..+..||+|+..   .+.+                            
T Consensus       151 ~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----------------------------  198 (417)
T 2cfq_A          151 WALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPSS---ATVA----------------------------  198 (417)
T ss_dssp             HHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCS---SCSS----------------------------
T ss_pred             HHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcccccc---cccc----------------------------
Confidence            8888888877654 5799999988877655544444444433210   0000                            


Q ss_pred             CcccccccCCccccchhhhccccccccccchhhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccc
Q 015488          154 DLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSI  232 (406)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  232 (406)
                      +.++  ++.+ +.              ..++....+ +++.+....    ..+.....++....+.|.+..+..      
T Consensus       199 ~~~~--~~~~-~~--------------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~------  251 (417)
T 2cfq_A          199 NAVG--ANHS-AF--------------SLKLALELFRQPKLWFLSL----YVIGVSCTYDVFDQQFANFFTSFF------  251 (417)
T ss_dssp             SSSS--SCCC-CC--------------CHHHHHHHTTCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHTS------
T ss_pred             cccc--cccc-cc--------------cHHHHHHHhcCCchhhHHH----HHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            0000  0000 00              000112222 233332211    111111122221111221110000      


Q ss_pred             ccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhh
Q 015488          233 LLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTF  312 (406)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (406)
                       ...............+..+..+++.++.++++||+|||+.+..+..+..+.........+............+......
T Consensus       252 -~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  330 (417)
T 2cfq_A          252 -ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLL  330 (417)
T ss_dssp             -SSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHH
T ss_pred             -hccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence             0000001111122333445677889999999999999998877666555543333322222222111111111112223


Q ss_pred             hhhhhhcccccCcchhhHHHhHH-HHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccCCccccc
Q 015488          313 IIANIFAPEIYPTSMRSTGAGVA-YAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVN  391 (406)
Q Consensus       313 ~~~~~~~~El~p~~~R~~a~g~~-~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~~~  391 (406)
                      +..+.+.+|.+|++.|+++.|+. +..+++|++++|.+.+.+.+..+....|.+.+++++++.++.+++.||+|..++-.
T Consensus       331 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~  410 (417)
T 2cfq_A          331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR  410 (417)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCSSS
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHH
Confidence            44577899999999999999996 66778999999999998877655555677788888888877777777777766554


Q ss_pred             c
Q 015488          392 T  392 (406)
Q Consensus       392 ~  392 (406)
                      +
T Consensus       411 ~  411 (417)
T 2cfq_A          411 R  411 (417)
T ss_dssp             S
T ss_pred             H
Confidence            3

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.80  E-value=4.9e-19  Score=174.73  Aligned_cols=109  Identities=17%  Similarity=0.084  Sum_probs=94.5

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcc-cHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHH---HHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSP-NYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVV---FSTFWTFGSV   75 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~-~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~---~~~~~~~G~~   75 (406)
                      +||+.+..+.++..++.++.++++ |++.+++.|++.|++.|.. +....++.|++|+++|++..+.   .+.+..+|.+
T Consensus        83 g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~  162 (524)
T 2xut_A           83 GKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSF  162 (524)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999 9999999999999998876 4566788999999999877666   8889999999


Q ss_pred             HHHHhhHHhcccchhHHHHHHhhHHHHHHHHHHH
Q 015488           76 SEAALAWIVMPILTWRWLLALSAIPAFVLLIFIV  109 (406)
Q Consensus        76 l~~~l~~~~~~~~~Wr~~f~i~~ip~~~~~~~~~  109 (406)
                      +++.++..+.+..+||+.|++.++..++..+..+
T Consensus       163 ~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          163 FASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             HHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            9999988887778999999998877666544443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.36  E-value=3.2e-11  Score=116.00  Aligned_cols=141  Identities=14%  Similarity=0.045  Sum_probs=101.8

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 015488          246 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT----LQSNILLTALLSGARMFSMGTFIIANIFAPE  321 (406)
Q Consensus       246 ~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E  321 (406)
                      ......++..++.+..|+++||+|||+.+..+.++.++..+....    ..+........+...++.....+....+.+|
T Consensus        67 ~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~  146 (451)
T 1pw4_A           67 ALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVH  146 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHH
Confidence            344455777889999999999999999998887777665554443    2222222222222223333445667888999


Q ss_pred             ccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhch-hhHHHHHHHHHHHHHHHHHHhcccccCC
Q 015488          322 IYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-QTAAILLLEALIVLSVVVILLIPFETKG  386 (406)
Q Consensus       322 l~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~et~~  386 (406)
                      .+|.+.|+.+.|+.+....+|..++|.+.+.+.+..+ ....+.+.++++++..++..++.||++.
T Consensus       147 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  212 (451)
T 1pw4_A          147 WWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ  212 (451)
T ss_dssp             TCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred             HCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence            9999999999999999999999999999887776655 5566777787777777666666666544

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.27  E-value=4.2e-10  Score=107.76  Aligned_cols=111  Identities=13%  Similarity=0.041  Sum_probs=80.6

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 015488          244 YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPL---VTLQSNILLTALLSGARMFSMGTFIIANIFAP  320 (406)
Q Consensus       244 ~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (406)
                      ........++..++.+..|.++||+|||+.+..+.++.++.....   ....+........+...+......+....+.+
T Consensus        64 g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~  143 (438)
T 3o7q_A           64 GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVT  143 (438)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHH
Confidence            334445556778899999999999999999988877776655544   22222222222222223333344567788999


Q ss_pred             cccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHh
Q 015488          321 EIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV  354 (406)
Q Consensus       321 El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~  354 (406)
                      |.+|.+.|+.+.|+.+....+|..++|.+.+.+.
T Consensus       144 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A          144 VLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             HSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999887776

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.26  E-value=2.6e-10  Score=111.15  Aligned_cols=139  Identities=11%  Similarity=0.017  Sum_probs=98.7

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhh-hchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 015488          245 INVFITSFAELPGLLTAALLVDR-VGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIY  323 (406)
Q Consensus       245 ~~~~~~~~~~~~g~~~~~~l~dr-~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~  323 (406)
                      .......++..++.+++|+++|| +|||+.+..+.++..+.........+............+......+....+.+|.+
T Consensus        58 ~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~  137 (491)
T 4aps_A           58 SIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLY  137 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHc
Confidence            34445567788899999999999 89999999887777666555444333332222222223333344567788899999


Q ss_pred             Ccch--hhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccc
Q 015488          324 PTSM--RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFE  383 (406)
Q Consensus       324 p~~~--R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e  383 (406)
                      |++.  |+.+.++.+....+|..++|.+.+.+.+..+....+.+.++.++++.+...+..|+
T Consensus       138 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  199 (491)
T 4aps_A          138 DEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKK  199 (491)
T ss_dssp             SSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            9988  77888888899999999999998887776666667777777677666665555444

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.13  E-value=5.6e-10  Score=104.75  Aligned_cols=143  Identities=17%  Similarity=0.052  Sum_probs=100.2

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccC
Q 015488          245 INVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYP  324 (406)
Q Consensus       245 ~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p  324 (406)
                      .......+...++.+..|+++||+|||+.+..+.....+.........+............+......+....+.+|.+|
T Consensus        39 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~  118 (375)
T 2gfp_A           39 SVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYE  118 (375)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCC
Confidence            33444556778899999999999999999988777666655544433332222222222223333345667788899999


Q ss_pred             cchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccCCc
Q 015488          325 TSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGK  387 (406)
Q Consensus       325 ~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~  387 (406)
                      ++.|+++.++.+....+|..++|.+.+.+.+..+....+.+.++..++..+...+..||++.+
T Consensus       119 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (375)
T 2gfp_A          119 RTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV  181 (375)
T ss_dssp             TSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence            999999999999999999999999988766654555567777777777666555666776544

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.09  E-value=3e-09  Score=104.48  Aligned_cols=137  Identities=15%  Similarity=0.079  Sum_probs=93.6

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhhhhhhhhhhhcccccC
Q 015488          247 VFITSFAELPGLLTAALLVDRV-GRKLSMTIMFIFVCIFLLPLVTLQ-SNILLTALLSGARMFSMGTFIIANIFAPEIYP  324 (406)
Q Consensus       247 ~~~~~~~~~~g~~~~~~l~dr~-grR~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~p  324 (406)
                      .....++..++.+.+|+++||+ |||+.+..+.++..+..+...... +............+......+....+.+|.+|
T Consensus        60 ~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~  139 (524)
T 2xut_A           60 FHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFD  139 (524)
T ss_dssp             HHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcC
Confidence            3444567788899999999999 999999887776666555444433 33322222222223333445677888999999


Q ss_pred             cchhhHHHhH---HHHhHhHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccc
Q 015488          325 TSMRSTGAGV---AYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFE  383 (406)
Q Consensus       325 ~~~R~~a~g~---~~~~~~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e  383 (406)
                      ++.|+++.+.   .+....+|+.++|.+.+.+.+..+....+.+.+++.+++.+...+..++
T Consensus       140 ~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  201 (524)
T 2xut_A          140 QSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKR  201 (524)
T ss_dssp             TTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999776666   8888889999999888777665555566777777766666555444433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.72  E-value=4.6e-07  Score=87.92  Aligned_cols=102  Identities=12%  Similarity=0.007  Sum_probs=70.5

Q ss_pred             HhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh------------------hhhhHHHHHHHHHHHHHhhhhh
Q 015488          251 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT------------------LQSNILLTALLSGARMFSMGTF  312 (406)
Q Consensus       251 ~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~  312 (406)
                      .++.++|++++|+++||+|||+.+..+.++..+..+....                  ..+.....+.=+...+...+..
T Consensus        65 ~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~  144 (491)
T 4gc0_A           65 LIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLAS  144 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            3667889999999999999999998887766655443331                  1111111111122223334456


Q ss_pred             hhhhhhcccccCcchhhHHHhHHHHhHhHHHHHHHHHHHH
Q 015488          313 IIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVG  352 (406)
Q Consensus       313 ~~~~~~~~El~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~  352 (406)
                      +....+.+|..|++.|+...++......+|..+++.+...
T Consensus       145 ~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~  184 (491)
T 4gc0_A          145 MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYF  184 (491)
T ss_dssp             HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchh
Confidence            7788999999999999999999888877777777665443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.14  E-value=2.3e-06  Score=81.44  Aligned_cols=116  Identities=12%  Similarity=0.089  Sum_probs=88.9

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHH-HHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVV-FSTFWTFGSVSEA   78 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~-~~~~~~~G~~l~~   78 (406)
                      +||+.+..+.++..++..+.++.++...+++..++.|++.+.. .....+..|..|++.||...++ ++....+|..++|
T Consensus       287 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp  366 (417)
T 2cfq_A          287 GGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMS  366 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhh
Confidence            5788888888887777777778888888888888888775443 3345678899999999998888 5778889999999


Q ss_pred             HhhHHhcccchhHHHHHHhhHHHHHHHHH-HHhccCCcc
Q 015488           79 ALAWIVMPILTWRWLLALSAIPAFVLLIF-IVFMPESPR  116 (406)
Q Consensus        79 ~l~~~~~~~~~Wr~~f~i~~ip~~~~~~~-~~~~pESp~  116 (406)
                      .+.+.+.+..+|+..|.+.++..++..+. ....||.++
T Consensus       367 ~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~  405 (417)
T 2cfq_A          367 VLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred             hhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence            99888777778999998887776665444 334565433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	406
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	4e-07

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 49.7 bits (117), Expect = 4e-07
 Identities = 40/387 (10%), Positives = 99/387 (25%), Gaps = 48/387 (12%)

Query: 5   SILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGL-GSGHVFFSWFMEFVPPSNRGKWM 63
            ++  A V    G +   + +   + +L  L G              + +     RG  +
Sbjct: 95  GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIV 154

Query: 64  VVFSTFWTFGSVSEAAL--AWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTK 121
            V++     G      L    +         L   +     V L     M ++P+     
Sbjct: 155 SVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ----- 209

Query: 122 GRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSG 181
                                         +  L        + P   + +    +    
Sbjct: 210 ------------------------------SCGLPPIEEYKNDYPDDYNEKAEQELTAKQ 239

Query: 182 FSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDA 241
                +L +   +   I    +Y     +         E+         S       + A
Sbjct: 240 IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFA--LDKSSWAYFLYEYA 297

Query: 242 SVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALL 301
            +   +     ++              G      +  + +   +  +    +  +    +
Sbjct: 298 GIPGTLLCGWMSDKVFRG-------NRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICM 350

Query: 302 SGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVC-PLVAVGLVTSCHQT 360
                   G  ++  + A E+ P     T AG     G +GG V    +    V      
Sbjct: 351 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWD 410

Query: 361 AAILLLEALIVLSVVVILLIPFETKGK 387
              +++    +L+V++++++    K +
Sbjct: 411 GGFMVMIGGSILAVILLIVVMIGEKRR 437

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	406
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.93
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.81
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.25
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.61

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.4e-24  Score=207.05  Aligned_cols=337  Identities=15%  Similarity=0.172  Sum_probs=204.6

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhc----ccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFS----PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSV   75 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a----~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~   75 (406)
                      |||+.+..+.++..++.++++++    +++..+++.|++.|++.|.. +....++.|++|+++||+.+++.+.+..+|.+
T Consensus        87 g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~  166 (447)
T d1pw4a_          87 NPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG  166 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHT
T ss_pred             CchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhh
Confidence            69999999999999999888776    47889999999999998775 45667889999999999999999999999999


Q ss_pred             HHHHhhHHhcc-cchhHHHHHHhhHHHHHH-HHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCC
Q 015488           76 SEAALAWIVMP-ILTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTN  153 (406)
Q Consensus        76 l~~~l~~~~~~-~~~Wr~~f~i~~ip~~~~-~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  153 (406)
                      +++.++..... ..+||+.|++.+++.++. ++..++.+|+|+........+ .                       .++
T Consensus       167 i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------------------~~~  222 (447)
T d1pw4a_         167 IPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEE-Y-----------------------KND  222 (447)
T ss_dssp             SHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTT-T-----------------------CCC
T ss_pred             hhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhh-h-----------------------hhh
Confidence            99887766543 458999999888776665 555667777776432111000 0                       000


Q ss_pred             CcccccccCCccccchhhhccccccccccchhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccc
Q 015488          154 DLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSIL  233 (406)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  233 (406)
                      +.++..++.+++         . ..+.  ......++.+   .........+......++...+.+....+.        
T Consensus       223 ~~~~~~~~~~~~---------~-~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  279 (447)
T d1pw4a_         223 YPDDYNEKAEQE---------L-TAKQ--IFMQYVLPNK---LLWYIAIANVFVYLLRYGILDWSPTYLKEV--------  279 (447)
T ss_dssp             -----------------------CCTH--HHHHHTSSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHBTTB--------
T ss_pred             cccchhhccccc---------c-chhh--HHHHHHHcCc---hHHHHHHHhhhhhhhhhcchhhhhhhcccc--------
Confidence            000000000000         0 0000  0111112111   111222222233333444444444332211        


Q ss_pred             cccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH-HHH--hh--hhhHHHHHHHHHHHHHh
Q 015488          234 LSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLL-PLV--TL--QSNILLTALLSGARMFS  308 (406)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~-~~~--~~--~~~~~~~~~~~~~~~~~  308 (406)
                        ................+..+++.++++++.||.+||...........+... ...  ..  .+............+..
T Consensus       280 --~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  357 (447)
T d1pw4a_         280 --KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLI  357 (447)
T ss_dssp             --SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHH
T ss_pred             --cccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence              011112223344555677889999999999999887544332222222111 111  11  12222222223333334


Q ss_pred             hhhhhhhhhhcccccCcchhhHHHhHHHHhHhHH-HHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccCC
Q 015488          309 MGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIG-GMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  386 (406)
Q Consensus       309 ~~~~~~~~~~~~El~p~~~R~~a~g~~~~~~~~g-~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~  386 (406)
                      .+..+..+.+..|.+|++.|+++.|+.+.+++++ .+++|.+.+.+.+..+....+.+++++++++.++.+++.+++++
T Consensus       358 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (447)
T d1pw4a_         358 YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR  436 (447)
T ss_dssp             THHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            4556677888999999999999999999999985 55678888888887776667777777777777766666544433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=3.5e-18  Score=159.36  Aligned_cols=331  Identities=10%  Similarity=-0.016  Sum_probs=187.7

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHH----HHHHhhccCCcch-hhHHHHHhhcCC--CcchhHHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLI----LRGLAGAGLGSGH-VFFSWFMEFVPP--SNRGKWMVVFSTFWTFG   73 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~----~R~l~G~g~g~~~-~~~~~~~E~~p~--~~Rg~~~~~~~~~~~~G   73 (406)
                      |||+.++.+..+..++..+..+..+......    .+.+.|.+.+... .......+..++  +++.+..+........|
T Consensus        71 grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (417)
T d1pv7a_          71 GLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVG  150 (417)
T ss_dssp             TTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccc
Confidence            6999999999999998888888777666544    4444444333322 222222222222  23445566667777788


Q ss_pred             HHHHHHhhHHhcccchhHHHHHHhhHHHHHHHHHHHhccCCcchhhccCChhhHHHHHHHHHHHcCCCCCCCCCcCCCCC
Q 015488           74 SVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTN  153 (406)
Q Consensus        74 ~~l~~~l~~~~~~~~~Wr~~f~i~~ip~~~~~~~~~~~pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  153 (406)
                      ..+++.++..+.+..+|+..+.......++..+..+..||+|+....+++.+                            
T Consensus       151 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------  202 (417)
T d1pv7a_         151 WALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVG----------------------------  202 (417)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHH----------------------------
T ss_pred             cccccccccccccccccccccchhhHHHHHHHHHHHHhcccccchhhhhhhh----------------------------
Confidence            8888887777655444444444444555555666777888776321110000                            


Q ss_pred             CcccccccCCccccchhhhccccccccccchhhh-ccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccc
Q 015488          154 DLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLM-LFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSI  232 (406)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  232 (406)
                            ++.++...               ..... ...+..+......................+......         
T Consensus       203 ------~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  252 (417)
T d1pv7a_         203 ------ANHSAFSL---------------KLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFA---------  252 (417)
T ss_dssp             ------SCCCCCCH---------------HHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS---------
T ss_pred             ------hhcccccc---------------cccccccccccccchhhhhHHHHHHHHhhhcccccccccccc---------
Confidence                  00000000               00001 111111111111111111111111111111111100         


Q ss_pred             ccccCccchhhHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhh
Q 015488          233 LLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTF  312 (406)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (406)
                        .................+...++....+++.||.|||+.+..+..+..+....+....+.+..........+......
T Consensus       253 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~  330 (417)
T d1pv7a_         253 --TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLL  330 (417)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             --ccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHH
Confidence              000011112223344456677888899999999999999988877776665555544443333333333333334455


Q ss_pred             hhhhhhcccccCcchhhHHHhHHHHhH-hHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhcccccCCccccc
Q 015488          313 IIANIFAPEIYPTSMRSTGAGVAYAVG-RIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVN  391 (406)
Q Consensus       313 ~~~~~~~~El~p~~~R~~a~g~~~~~~-~~g~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~~~  391 (406)
                      +....+..|.+|++.|+++.|+.+++. .+|+.++|.+.+.+.+..+....+.++++++++..++..++.++++..++.+
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r  410 (417)
T d1pv7a_         331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR  410 (417)
T ss_dssp             HHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred             HHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence            677888999999999999999977654 5899999999998888777667788888888888888887776666555543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=1.7e-10  Score=108.19  Aligned_cols=140  Identities=14%  Similarity=0.053  Sum_probs=95.5

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 015488          246 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL----QSNILLTALLSGARMFSMGTFIIANIFAPE  321 (406)
Q Consensus       246 ~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E  321 (406)
                      ......++..++.+++|.++||+|||+.+..+.++.++..+.....    .+.......-....++....++....+.+|
T Consensus        64 ~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  143 (447)
T d1pw4a_          64 ALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVH  143 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            3344557778899999999999999999988877766655443321    111222222222223333445667788999


Q ss_pred             ccCcchhhHHHhHHHHhHhHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHHHHHHHHhcccccC
Q 015488          322 IYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC-HQTAAILLLEALIVLSVVVILLIPFETK  385 (406)
Q Consensus       322 l~p~~~R~~a~g~~~~~~~~g~~~~p~~~~~l~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~et~  385 (406)
                      .+|.+.|+.+.|+.+....+|+.++|.+...+.... +....+++.+.++++..++.+++.+|++
T Consensus       144 ~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (447)
T d1pw4a_         144 WWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP  208 (447)
T ss_dssp             TCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred             HHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccch
Confidence            999999999999999999999999988776555443 3344566667677666666666665543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=3.5e-08  Score=90.22  Aligned_cols=114  Identities=12%  Similarity=0.068  Sum_probs=94.2

Q ss_pred             CcchhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhccCCcc-hhhHHHHHhhcCCCcchhHHHHH-HHHHHHHHHHHH
Q 015488            1 MEEGSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVF-STFWTFGSVSEA   78 (406)
Q Consensus         1 ~rr~~~~~~~~~~~i~~~~~~~a~~~~~l~~~R~l~G~g~g~~-~~~~~~~~E~~p~~~Rg~~~~~~-~~~~~~G~~l~~   78 (406)
                      +||+.+..+.++..++..+..+.++.+.+++.-++.|++.+.. +....++.|..|+++||+..+.. +....+|..+++
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~  366 (417)
T d1pv7a_         287 GGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMS  366 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHH
T ss_pred             ccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678888888999999999999999999999999999998775 45567889999999999999874 567789999999


Q ss_pred             HhhHHhcccchhHHHHHHhhHHHHHHH-HHHHhccCC
Q 015488           79 ALAWIVMPILTWRWLLALSAIPAFVLL-IFIVFMPES  114 (406)
Q Consensus        79 ~l~~~~~~~~~Wr~~f~i~~ip~~~~~-~~~~~~pES  114 (406)
                      .+++.+.+..||+..|++.++..++.. +..+.+++.
T Consensus       367 ~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~  403 (417)
T d1pv7a_         367 VLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            999888888899999998877666553 444455443