Citrus Sinensis ID: 015494

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400------
Protein Sequence
MEDTEVRVGDVADRTRGADVASASGAGGGGARYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFKPQAVHASVGPRTYSTTTVCSNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEQYVQTQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIQASHSDHKGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRDGSMYGQMSHAMETNGTPDLSPVANDDSVEPDVDDDDQYSKRRKMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRYVSNLMI
Secondary Structure (PSIPRED)
ccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccEEEEEEcccccccccccEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEccccccccccccHHHHHccccccccccccccccccccccccEEEccccccHHHHccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccHHHcccEEEccccccccEEEEcccccccEEEEEEcccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccEEEEEEcccEEEccccccEEHcccEEEccccccccccEccc
Coil and Loop (DISEMBL)
medtevrvgdvadrtrgadvasasgaggggaryklmspaklpisrspcimippglspssflespvllsnvkaepspttgsffkpqavhasvgprtystttvcsntlnegeascfefrphsrsnmvpadlnpqrseqyvqtqgqcqtqsfassptikgemtvssnelsllgpiqmattgtivpaevdsdepkqmgqptagiqashsdhkgggpsmpsddgynwrkygqkhvkgsefprsyykcthpncevkklfershdgqiTEIIYkgthdhpkpqlsrrysagnmmsiqeerpdkvssltcrdgsmygqmshametngtpdlspvanddsvepdvddddqyskRRKMDALVadvtpvvkpireprvvvqtlsevdilddgyrwrkygqkvvrgnpnpryvsnlmi
Flexible Loop (DISEMBL)
medtevrvgdvadrtrgadvasasgaggggarYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFKPQAVHASVGPRTYSTTTVCSNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEQYVQTQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIqashsdhkgggpsmpSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIiykgthdhpkpQLSRRYSAGNMMSIqeerpdkvsslTCRDGSMYGQMSHAMETNGTPDLSPVANDDSVEPDVDDddqyskrrkmdalvadvtpvvkpireprvvvqtlsevdilddgyrwrkygqkvvrgnpnpryvsnlmi
Low Complexity Region (SEG)
MEDTEVRVGDVADRTRgadvasasgaggggaRYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFKPQAVHASVGPRTYSTTTVCSNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEqyvqtqgqcqtqSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIQASHSDHKGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRDGSMYGQMSHAMETNGTPDLSPVANddsvepdvddddQYSKRRKMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRYVSNLMI
Disordered region (IsUnstruct)
**********************************************************************************************TYSTTTVCSNTL******************************************************************************************************************NWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKG*********************************************************************************ALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVR*************
Disordered Region (DISOPRED)
****************************************************PGLSPSSFLESPVLLS******************************************************************************************************************************************************GYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRDGSMYGQMSHAMETNGTPDLSPVANDDSVEPDVDDDDQYSKRRKMDA************REPRVVVQT*SEVDILDDGYRWRKYGQKVVRGNPNPRYVSNLMI
Disordered Region (DISEMBL)
MEDTEVRVGDVADRTRGADVASASGAGGGGARYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFKPQAVHASVGPRTYSTTTVCSNTLNEGEASCFEFRPHSRSNMVPADLNP*****************FASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDS***************************PSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSI**********LTCRDGSMYGQMSHAMETNGTPDLSPVANDDSVEPDVDDDDQYSKRRKMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRYVSNLMI
Disordered Region (DISPRO)
**********************************LMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFK************************************************************************************************************************HSDHKGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTH*******************************************************************************************IREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRYVSNLMI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEDTEVRVGDVADRTRGADVASASGAGGGGARYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFKPQAVHASVGPRTYSTTTVCSNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEQYVQTQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIQASHSDHKGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRDGSMYGQMSHAMETNGTPDLSPVANDDSVEPDVDDDDQYSKRRKMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRYVSNLMI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	406	2.2.26 [Sep-21-2011]
Q93WV0	557	Probable WRKY transcripti	yes	no	0.871	0.635	0.601	1e-113
Q9FG77	687	Probable WRKY transcripti	no	no	0.844	0.499	0.383	3e-54
O65590	568	Probable WRKY transcripti	no	no	0.470	0.336	0.471	3e-46
Q9XI90	514	Probable WRKY transcripti	no	no	0.768	0.607	0.356	8e-45
Q8S8P5	519	Probable WRKY transcripti	no	no	0.448	0.350	0.495	2e-41
Q93WU7	423	Probable WRKY transcripti	no	no	0.399	0.382	0.508	8e-41
Q9C5T3	309	Probable WRKY transcripti	no	no	0.339	0.446	0.470	2e-38
O22921	393	Probable WRKY transcripti	no	no	0.416	0.430	0.429	4e-36
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.460	0.098	0.429	6e-36
Q9SI37	487	WRKY transcription factor	no	no	0.564	0.470	0.357	9e-33

>sp|Q93WV0|WRK20_ARATH Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1

 Score =  408 bits (1048), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/381 (60%), Positives = 266/381 (69%), Gaps = 27/381 (7%)

Query: 31  ARYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFKPQAVHAS 90
           ARYKLMSPAKLPISRS  I IPPGLSP+SFLESPV +SN+K EPSPTTGS FKP+ VH S
Sbjct: 36  ARYKLMSPAKLPISRSTDITIPPGLSPTSFLESPVFISNIKPEPSPTTGSLFKPRPVHIS 95

Query: 91  VGPRTYSTTTVCSNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEQYVQTQGQCQTQSFA 150
               +Y+      NT  E ++S FEFRP + SNMV A+L   RSE  V  QGQ    S +
Sbjct: 96  ASSSSYTGRGFHQNTFTEQKSSEFEFRPPA-SNMVYAELGKIRSEPPVHFQGQGHGSSHS 154

Query: 151 SSPTIKGEMTVSSNELSL-LGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIQASHSDHKG 209
              +   +   SS+ELS    P QM  T + +PA  D +E          IQ S +D +G
Sbjct: 155 P--SSISDAAGSSSELSRPTPPCQMTPTSSDIPAGSDQEE---------SIQTSQNDSRG 203

Query: 210 GGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGT 269
             PS+ +DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQIT+IIYKGT
Sbjct: 204 STPSILADDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGT 263

Query: 270 HDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRD--GSMYGQMSHAMETNGTPDLSPV- 326
           HDHPKPQ  RR S G  M+ QEER DK  S T RD  GS    +S+  E  G P++ P+ 
Sbjct: 264 HDHPKPQPGRRNSGG--MAAQEERLDKYPSSTGRDEKGSGVYNLSNPNEQTGNPEVPPIS 321

Query: 327 ANDDSVEP--------DVDDDDQYSKRRKMDALVADVTPVVKPIREPRVVVQTLSEVDIL 378
           A+DD  E         + DDDD +SKRR+M+  + ++TP+VKPIREPRVVVQTLSEVDIL
Sbjct: 322 ASDDGGEAAASNRNKDEPDDDDPFSKRRRMEGAM-EITPLVKPIREPRVVVQTLSEVDIL 380

Query: 379 DDGYRWRKYGQKVVRGNPNPR 399
           DDGYRWRKYGQKVVRGNPNPR
Sbjct: 381 DDGYRWRKYGQKVVRGNPNPR 401

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG77|WRKY2_ARATH Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1

 Score =  213 bits (541), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 158/412 (38%), Positives = 206/412 (50%), Gaps = 69/412 (16%)

Query: 45  RSPCIMIP-PGLSPSSFLESPVLLSNVKAEPSPTTGSF-FKPQAVHASVGPRTYSTTTVC 102
           RSPC+ I  PGLSP++ LESPV LSN  A+PSPTTG F F P      V     S+    
Sbjct: 108 RSPCLTISSPGLSPATLLESPVFLSNPLAQPSPTTGKFPFLP-----GVNGNALSSEKAK 162

Query: 103 SNTLNEGEASCFEFRPHSRSNM-VPADLNPQRSEQYVQTQGQCQTQSFASSPTIKGEMTV 161
               ++  AS F F P SRS+           S  Y     +  +   A       E   
Sbjct: 163 DEFFDDIGAS-FSFHPVSRSSSSFFQGTTEMMSVDYGNYNNRSSSHQSAEEVKPGSENIE 221

Query: 162 SSNELSLLGPIQMATTGTIVPAEVDSDEP-KQMGQPTAGIQASHSDHKGGGPSMPSDDGY 220
           SSN   L G       G    ++V ++   + +       +    D   GG   P++DGY
Sbjct: 222 SSN---LYGIETDNQNGQNKTSDVTTNTSLETVDHQEEEEEQRRGDSMAGG--APAEDGY 276

Query: 221 NWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRR 280
           NWRKYGQK VKGSE+PRSYYKCT+PNC+VKK  ERS +G ITEIIYKG H+H KP  +RR
Sbjct: 277 NWRKYGQKLVKGSEYPRSYYKCTNPNCQVKKKVERSREGHITEIIYKGAHNHLKPPPNRR 336

Query: 281 Y-----SAGNMMSIQEERPDKVSSLTC--------------RDGSM---YGQMSHAMET- 317
                     +   Q++R    + ++C               +GS    YG  S +++  
Sbjct: 337 SGMQVDGTEQVEQQQQQRDSAATWVSCNNTQQQGGSNENNVEEGSTRFEYGNQSGSIQAQ 396

Query: 318 ------NGTPDLSPVANDDSVEPDVDDDDQ------------------------YSKRRK 347
                 +G P +  V    +   D D+DD+                         SKRRK
Sbjct: 397 TGGQYESGDP-VVVVDASSTFSNDEDEDDRGTHGSVSLGYDGGGGGGGGEGDESESKRRK 455

Query: 348 MDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR 399
           ++A  A+++   + IREPRVVVQT S+VDILDDGYRWRKYGQKVV+GNPNPR
Sbjct: 456 LEAFAAEMSGSTRAIREPRVVVQTTSDVDILDDGYRWRKYGQKVVKGNPNPR 507

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O65590|WRK34_ARATH Probable WRKY transcription factor 34 OS=Arabidopsis thaliana GN=WRKY34 PE=2 SV=1

 Score =  186 bits (472), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 107/227 (47%), Positives = 134/227 (59%), Gaps = 36/227 (15%)

Query: 209 GGGPSM----PSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEI 264
           G G SM    P+DDGYNWRKYGQK VKGSE+PRSYYKCTHPNCE KK  ERS +G I EI
Sbjct: 166 GLGDSMACCAPADDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEAKKKVERSREGHIIEI 225

Query: 265 IYKGTHDHPKPQLSRRYSAGNMMSIQEERPD--KVSSLTCRDGSM-----------YGQM 311
           IY G H H KP  +RR   G+  + Q+ + D  +       + ++           YG  
Sbjct: 226 IYTGDHIHSKPPPNRRSGIGSSGTGQDMQIDATEYEGFAGTNENIEWTSPVSAELEYGSH 285

Query: 312 SHAMET-NGTPDLS-PVANDDSVEPDVDDDDQY-----------------SKRRKMDALV 352
           S +M+  NGT       A  D++  D ++DD+                  SKRRK++A  
Sbjct: 286 SGSMQVQNGTHQFGYGDAAADALYRDENEDDRTSHMSVSLTYDGEVEESESKRRKLEAYA 345

Query: 353 ADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR 399
            + +   +  REPRVVVQT S++DILDDGYRWRKYGQKVV+GNPNPR
Sbjct: 346 TETSGSTRASREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 392

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XI90|WRKY4_ARATH Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2

 Score =  181 bits (459), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 142/398 (35%), Positives = 188/398 (47%), Gaps = 86/398 (21%)

Query: 24  SGAGGGGARYKLMSPAKLPISRSPC---IMIPPGLSPSSFLESPVLLSNVKAEPSPTTGS 80
           S +G    R+K   P  L IS+S       +PPGLSP+  L+SP  L       SP  GS
Sbjct: 96  SSSGDVDPRFKQNRPTGLMISQSQSPSMFTVPPGLSPAMLLDSPSFLGLF----SPVQGS 151

Query: 81  F-FKPQAVHASVGPRTYSTTTVCSNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEQYVQ 139
           +    Q   A V     +   V +N                 +NM P    P  S     
Sbjct: 152 YGMTHQQALAQV-----TAQAVQAN-----------------ANMQPQTEYPPPS----- 184

Query: 140 TQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAG 199
                Q QSF+S     G+  + +   S   P Q  T+   +  E  S +P  + +P   
Sbjct: 185 -----QVQSFSS-----GQAQIPT---SAPLPAQRETSDVTI-IEHRSQQPLNVDKP--- 227

Query: 200 IQASHSDHKGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDG 259
                           +DDGYNWRKYGQK VKGSEFPRSYYKCT+P C VKK  ERS DG
Sbjct: 228 ----------------ADDGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKKKVERSLDG 271

Query: 260 QITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRDGSMYG---------- 309
           Q+TEIIYKG H+H  PQ ++R +  N  +I     +     +    S +           
Sbjct: 272 QVTEIIYKGQHNHEPPQNTKRGNKDNTANINGSSINNNRGSSELGASQFQTNSSNKTKRE 331

Query: 310 QMSHAMETNGTPDLSPVANDDSV---EPDVDDDDQYS---KRRKMDALVADVTPVV--KP 361
           Q     +   T  LS  ++ + V   E DV + D+     KRR  +  +++  P    + 
Sbjct: 332 QHEAVSQATTTEHLSEASDGEEVGNGETDVREKDENEPDPKRRSTEVRISEPAPAASHRT 391

Query: 362 IREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR 399
           + EPR++VQT SEVD+LDDGYRWRKYGQKVV+GNP PR
Sbjct: 392 VTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPR 429

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8P5|WRK33_ARATH Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2

 Score =  170 bits (431), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 99/200 (49%), Positives = 120/200 (60%), Gaps = 18/200 (9%)

Query: 217 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQ 276
           +DGYNWRKYGQK VKGSE PRSYYKCT PNC  KK  ERS +GQITEI+YKG+H+HPKPQ
Sbjct: 184 EDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLEGQITEIVYKGSHNHPKPQ 243

Query: 277 LSRR--------YSAGNMMSIQEERPDKVSSLTCRDGSMYGQMSHAMETNGTPDLSPVAN 328
            +RR        +SA    S+   R    S     + S +   S  M+         V +
Sbjct: 244 STRRSSSSSSTFHSAVYNASLDHNR-QASSDQPNSNNSFHQSDSFGMQQEDNTTSDSVGD 302

Query: 329 DDS------VEPDVDD--DDQYSKRRKMD-ALVADVTPVVKPIREPRVVVQTLSEVDILD 379
           D+       V  D +D   +  +KR K D           K +REPR+VVQT S++DILD
Sbjct: 303 DEFEQGSSIVSRDEEDCGSEPEAKRWKGDNETNGGNGGGSKTVREPRIVVQTTSDIDILD 362

Query: 380 DGYRWRKYGQKVVRGNPNPR 399
           DGYRWRKYGQKVV+GNPNPR
Sbjct: 363 DGYRWRKYGQKVVKGNPNPR 382

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WU7|WRK58_ARATH Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=2

 Score =  168 bits (425), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 94/185 (50%), Positives = 118/185 (63%), Gaps = 23/185 (12%)

Query: 215 PSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPK 274
           P+DDGYNWRKYGQK +KG E+PRSYYKCTH NC VKK  ERS DGQIT+IIYKG HDH +
Sbjct: 165 PADDGYNWRKYGQKPIKGCEYPRSYYKCTHVNCPVKKKVERSSDGQITQIIYKGQHDHER 224

Query: 275 PQLSRRYSAGNMMSIQEERPDKVSSLTCRDGSMYGQMSHAMETNGTPDLSPVANDDSVEP 334
           PQ +RR   G                  RD +  G     ME++         +DD  + 
Sbjct: 225 PQ-NRRGGGG------------------RDSTEVGGAGQMMESSDDSGYRKDHDDDDDDD 265

Query: 335 DVDDDDQYSKRRKMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRG 394
           + D+D   SK R++D     V+   + + EP+++VQT SEVD+LDDGYRWRKYGQKVV+G
Sbjct: 266 EDDEDLPASKIRRIDG----VSTTHRTVTEPKIIVQTKSEVDLLDDGYRWRKYGQKVVKG 321

Query: 395 NPNPR 399
           NP+PR
Sbjct: 322 NPHPR 326

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5T3|WRK26_ARATH Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2

 Score =  160 bits (404), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 87/185 (47%), Positives = 110/185 (59%), Gaps = 47/185 (25%)

Query: 216 SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 274
           SDDGYNWRKYGQK VKGSE PRSY+KCT+PNC  KK  E S   GQ+ EI+YKG+H+HPK
Sbjct: 116 SDDGYNWRKYGQKQVKGSENPRSYFKCTYPNCLTKKKVETSLVKGQMIEIVYKGSHNHPK 175

Query: 275 PQLSRRYSAGNMMSIQEERPDKVSSLTCRDGSMYGQMSHAMETNGTPDLSPVANDDSVEP 334
           PQ ++R S+  +                         +H   +NG               
Sbjct: 176 PQSTKRSSSTAI------------------------AAHQNSSNGDGK------------ 199

Query: 335 DVDDDDQYSKRRKMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRG 394
           D+ +D+  +KR K +          + ++EPRVVVQT S++DILDDGYRWRKYGQKVV+G
Sbjct: 200 DIGEDETEAKRWKRE----------ENVKEPRVVVQTTSDIDILDDGYRWRKYGQKVVKG 249

Query: 395 NPNPR 399
           NPNPR
Sbjct: 250 NPNPR 254

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O22921|WRK25_ARATH Probable WRKY transcription factor 25 OS=Arabidopsis thaliana GN=WRKY25 PE=1 SV=1

 Score =  152 bits (384), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 88/205 (42%), Positives = 116/205 (56%), Gaps = 36/205 (17%)

Query: 213 SMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDH 272
           S  S+DGY WRKYGQK VK SE PRSY+KCT+P+C  KK+ E + DGQITEIIYKG H+H
Sbjct: 162 SRNSNDGYGWRKYGQKQVKKSENPRSYFKCTYPDCVSKKIVETASDGQITEIIYKGGHNH 221

Query: 273 PKPQLSRRYSAGNMMSIQEERPDKVSSLTCRDGSMYGQMSHAMETNGTPDLSPVANDDSV 332
           PKP+ ++R S  ++       P  V+     + +      H    N            S+
Sbjct: 222 PKPEFTKRPSQSSL-------PSSVNGRRLFNPASVVSEPHDQSENS-----------SI 263

Query: 333 EPDVDDDDQYS-----------------KRRKMDALVADVT-PVVKPIREPRVVVQTLSE 374
             D  D +Q S                 KR K +     ++  V K ++EPRVVVQT+S+
Sbjct: 264 SFDYSDLEQKSFKSEYGEIDEEEEQPEMKRMKREGEDEGMSIEVSKGVKEPRVVVQTISD 323

Query: 375 VDILDDGYRWRKYGQKVVRGNPNPR 399
           +D+L DG+RWRKYGQKVV+GN NPR
Sbjct: 324 IDVLIDGFRWRKYGQKVVKGNTNPR 348

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score =  152 bits (383), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 85/198 (42%), Positives = 116/198 (58%), Gaps = 11/198 (5%)

Query: 217 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQ 276
           +DGYNW+KYGQK VKGS+FP SYYKCT+  C  K+  ERS DGQ+ EI+YK  H+H  P 
Sbjct: 468 NDGYNWQKYGQKKVKGSKFPLSYYKCTYLGCPSKRKVERSLDGQVAEIVYKDRHNHEPPN 527

Query: 277 L----SRRYSAGNMMSIQEERPDKVSSLTCRDGSMYGQMSHAMETNGTPDLSPV------ 326
                S  Y +G+   I     +  +S    + +   Q   A        +S        
Sbjct: 528 QGKDGSTTYLSGSSTHINCMSSELTASQFSSNKTKIEQQEAASLATTIEYMSEASDNEED 587

Query: 327 ANDDSVEPDVDDDDQYSKRRKMDALVADVTPVV-KPIREPRVVVQTLSEVDILDDGYRWR 385
           +N ++ E + D+D+   KRR  +  V+++     + +REPRV+ QT SEVD LDDGYRWR
Sbjct: 588 SNGETSEGEKDEDEPEPKRRITEVQVSELADASDRTVREPRVIFQTTSEVDNLDDGYRWR 647

Query: 386 KYGQKVVRGNPNPRYVSN 403
           KYGQKVV+GNP PR+ S+
Sbjct: 648 KYGQKVVKGNPYPRFSSS 665

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI37|WRKY1_ARATH WRKY transcription factor 1 OS=Arabidopsis thaliana GN=WRKY1 PE=1 SV=1

 Score =  141 bits (356), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 99/277 (35%), Positives = 139/277 (50%), Gaps = 48/277 (17%)

Query: 165 ELSLLGPIQMATTGTIVPAEVDSDEPKQMGQP----TAGIQASHSDHKGGGPSMPS---D 217
           EL  L P  +A+      +EVD   P     P    ++G  +  S  +G  P +     +
Sbjct: 57  ELEKLVPHTVASQ-----SEVDVASPVSEKAPKVSESSGALSLQSGSEGNSPFIREKVME 111

Query: 218 DGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKP-- 275
           DGYNWRKYGQK VKG+EF RSYY+CTHPNC+ KK  ERS  GQ+ + +Y G HDHPKP  
Sbjct: 112 DGYNWRKYGQKLVKGNEFVRSYYRCTHPNCKAKKQLERSAGGQVVDTVYFGEHDHPKPLA 171

Query: 276 -----QLSRRYSAGNMMSIQEERPDKVSSL--TC-----------RDGSMYGQMSHAM-- 315
                   +R      +S  E+R D VS +   C             GS    +      
Sbjct: 172 GAVPINQDKRSDVFTAVSKGEQRIDIVSLIYKLCIVSYDIMFVEKTSGSSVQTLRQTEPP 231

Query: 316 ETNGTPDLSPVANDDSVEPDV-------------DDDDQYSKRRKMDALVADVTPVVKPI 362
           + +G   +S +   D V+ D+             D +   +KRRK    + +++PV +  
Sbjct: 232 KIHGGLHVSVIPPADDVKTDISQSSRITGDNTHKDYNSPTAKRRKKGGNI-ELSPVERST 290

Query: 363 REPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR 399
            + R+VV T +  DI++DGYRWRKYGQK V+G+P PR
Sbjct: 291 NDSRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPR 327

Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	406
255576310	562	WRKY transcription factor, putative [Ric	0.933	0.674	0.730	1e-157
224056431	557	predicted protein [Populus trichocarpa]	0.948	0.691	0.689	1e-150
359494165	580	PREDICTED: probable WRKY transcription f	0.933	0.653	0.676	1e-141
224114435	539	predicted protein [Populus trichocarpa]	0.908	0.684	0.692	1e-141
356501612	588	PREDICTED: probable WRKY transcription f	0.923	0.637	0.648	1e-136
356569659	577	PREDICTED: probable WRKY transcription f	0.903	0.636	0.655	1e-136
297737535	552	unnamed protein product [Vitis vinifera]	0.896	0.659	0.664	1e-134
357459955	595	WRKY transcription factor [Medicago trun	0.901	0.615	0.643	1e-131
356524334	577	PREDICTED: probable WRKY transcription f	0.903	0.636	0.635	1e-131
357494813	545	WRKY transcription factor [Medicago trun	0.842	0.627	0.597	1e-118

>gi|255576310|ref|XP_002529048.1| WRKY transcription factor, putative [Ricinus communis] gi|223531528|gb|EEF33359.1| WRKY transcription factor, putative [Ricinus communis]

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 282/386 (73%), Positives = 311/386 (80%), Gaps = 7/386 (1%)

Query: 19  DVASASGAGGGGARYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTT 78
           D  S S A  GGARYKLMSPAKLPISRSPCI IPPGLSP+SFLESPVLLSNVKAEPSPTT
Sbjct: 15  DSDSGSAASVGGARYKLMSPAKLPISRSPCITIPPGLSPTSFLESPVLLSNVKAEPSPTT 74

Query: 79  GSFFKPQAVHASVGPRTYSTTTVCSNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEQYV 138
           GSF KP   H S+G   YS T V SN   E  +SCFEFRPH RSN+VPAD++ + +EQ V
Sbjct: 75  GSFAKPPTGHGSLGSNPYSATAVPSNAFGERTSSCFEFRPHPRSNLVPADVHHRITEQSV 134

Query: 139 QTQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTA 198
           Q QG CQ QS ASSP +K EM VSSNE SL  P  + ++GT  P EV+SDE  Q+G    
Sbjct: 135 QVQGHCQNQSLASSPRVKSEMAVSSNEFSLSAP--LPSSGTSAPGEVESDELNQIGVSNN 192

Query: 199 GIQASHSDHKGG-GPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH 257
           G+QAS +DHKGG G SMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH
Sbjct: 193 GLQASQTDHKGGSGISMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH 252

Query: 258 DGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRDGSM---YGQMSHA 314
           DGQITEIIYKGTHDHPKPQ SRRYS+G ++S+QE+R DK+ SL  RD      YGQ+SH 
Sbjct: 253 DGQITEIIYKGTHDHPKPQPSRRYSSGAVLSMQEDRSDKILSLPGRDDKTSIAYGQVSHT 312

Query: 315 METNGTPDLSPV-ANDDSVEPDVDDDDQYSKRRKMDALVADVTPVVKPIREPRVVVQTLS 373
           ++ NGTP+LSPV ANDDS+E   DDDD +SKRRKMD    +VTPVVKPIREPRVVVQTLS
Sbjct: 313 IDPNGTPELSPVTANDDSIEGAEDDDDPFSKRRKMDTGGFEVTPVVKPIREPRVVVQTLS 372

Query: 374 EVDILDDGYRWRKYGQKVVRGNPNPR 399
           EVDILDDGYRWRKYGQKVVRGNPNPR
Sbjct: 373 EVDILDDGYRWRKYGQKVVRGNPNPR 398

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056431|ref|XP_002298853.1| predicted protein [Populus trichocarpa] gi|222846111|gb|EEE83658.1| predicted protein [Populus trichocarpa]

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 273/396 (68%), Positives = 307/396 (77%), Gaps = 11/396 (2%)

Query: 8   VGDVADRTRGADVASASGAGGGGARYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLL 67
           V D  D TR         +GGGGARYKLMSPAKLPISRS CI IPPGLSP+SFLESPVLL
Sbjct: 10  VSDCGDPTRPE-------SGGGGARYKLMSPAKLPISRSACITIPPGLSPTSFLESPVLL 62

Query: 68  SNVKAEPSPTTGSFFKPQAVHASVGPRTYSTTTVCSNTLNEGEASCFEFRPHSRSNMVPA 127
           SNVKAEPSPTTG+F KP+    S+    YS TTV S    E ++  FEFRP++RSNMV A
Sbjct: 63  SNVKAEPSPTTGTFTKPRTALGSLSSTPYSATTVSSTACGERKSDYFEFRPYARSNMVSA 122

Query: 128 DLNPQRSEQYVQTQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDS 187
           D+N QRS Q  Q Q QC +QSFAS P +KGEM VS+NELSL   + M T+    PAEVDS
Sbjct: 123 DINHQRSTQCAQVQSQCHSQSFASPPLVKGEMEVSTNELSLSASLHMVTSVASAPAEVDS 182

Query: 188 DEPKQMGQPTAGIQASHSDHKGG-GPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPN 246
           DE  Q G  ++G+QAS SDH+ G  PSM SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPN
Sbjct: 183 DELNQTGLSSSGLQASQSDHRAGTAPSMSSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPN 242

Query: 247 CEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTC---R 303
           CEVKKLFERSHDGQITEIIYKGTHDHPKPQ SRRY++G+++S+QE+R DK SSL     +
Sbjct: 243 CEVKKLFERSHDGQITEIIYKGTHDHPKPQPSRRYASGSVLSMQEDRFDKSSSLPNQGDK 302

Query: 304 DGSMYGQMSHAMETNGTPDLSPVANDDSVEPDVDDDDQYSKRRKMDALVADVTPVVKPIR 363
               YGQ+ HA+E NG  +LS  ANDD+ E   DDDD +SKRR++DA   DVTPVVKPIR
Sbjct: 303 SPGAYGQVPHAIEPNGALELSTGANDDTGEGAEDDDDPFSKRRRLDAGGFDVTPVVKPIR 362

Query: 364 EPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR 399
           EPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR
Sbjct: 363 EPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR 398

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494165|ref|XP_002274204.2| PREDICTED: probable WRKY transcription factor 20-like [Vitis vinifera]

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 268/396 (67%), Positives = 306/396 (77%), Gaps = 17/396 (4%)

Query: 18  ADVASASGAGGGGARYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPT 77
           ++VAS S    GGARY+LMSPAKLPISRSPC+ IP GLSPSSFL+SPVLLSN+K EPSPT
Sbjct: 24  SNVASGSD---GGARYRLMSPAKLPISRSPCLTIPSGLSPSSFLDSPVLLSNMKVEPSPT 80

Query: 78  TGSFFKPQAVHASVGPRTYSTTTVCSNT--LNEGEASCFEFRPHSRSNMVPADLNPQRSE 135
           TGSF KPQ +H SVG   +S+T+ CSN+   +E ++  FEF+PH+ SN V ADLN Q+ +
Sbjct: 81  TGSFAKPQMIHGSVGSSMFSSTSNCSNSNTFDERKSGSFEFKPHTVSNSVSADLNHQQVK 140

Query: 136 QYVQTQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQ 195
            ++  Q Q    S   SPT+K EM   SNELSL  P  M T+    PAEVDSDE  Q G 
Sbjct: 141 PFIPVQAQHPDLSLMPSPTVKSEMMAPSNELSLCSPGHMVTSLESAPAEVDSDELNQQGH 200

Query: 196 PTAGIQASHSDHKGGGPSM----PSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKK 251
           P  G+QAS SD KG GPS      S+DGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKK
Sbjct: 201 PNNGVQASQSDQKGIGPSAVVERSSEDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKK 260

Query: 252 LFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRDG---SMY 308
           LFER+HDGQI EIIYKGTHDHPKPQ SRRY++G ++ +QEERPDKVSSL  RD    S+Y
Sbjct: 261 LFERAHDGQIVEIIYKGTHDHPKPQPSRRYASGAILPVQEERPDKVSSLIGRDDKSPSIY 320

Query: 309 GQMSHAMETNGTPDLSPV-ANDDSVE----PDVDDDDQYSKRRKMDALVADVTPVVKPIR 363
           GQM+H ++ NGTP+LSPV ANDD VE     +VD+DD  SKRRKM+    DVTPVVKPIR
Sbjct: 321 GQMAHNIDPNGTPELSPVAANDDVVEGAILDEVDEDDPLSKRRKMEIGGIDVTPVVKPIR 380

Query: 364 EPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR 399
           EPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR
Sbjct: 381 EPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR 416

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114435|ref|XP_002316759.1| predicted protein [Populus trichocarpa] gi|222859824|gb|EEE97371.1| predicted protein [Populus trichocarpa]

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 261/377 (69%), Positives = 301/377 (79%), Gaps = 8/377 (2%)

Query: 28  GGGARYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFKPQAV 87
           GGGARYKLMSPAKLPISRS C MI PGLSP+SFLESPVLLSNVKAEPSPTTG+F  PQ V
Sbjct: 1   GGGARYKLMSPAKLPISRSACTMISPGLSPTSFLESPVLLSNVKAEPSPTTGTFTNPQTV 60

Query: 88  HASVGPRTYSTTTVCSNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEQYVQTQGQCQTQ 147
             S+   +Y  TTV S    E +++CFEFRPH+RS+MV AD+N QRS Q V+ Q QCQ+Q
Sbjct: 61  LGSLSSTSYPATTVYSTNFGERKSNCFEFRPHARSDMVSADMNHQRSAQCVKVQSQCQSQ 120

Query: 148 SFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIQASHSDH 207
           SF SSP++KGEM V +NEL+L  P+ M T+G+ VPAEVDSDE  QMG  ++G++AS S  
Sbjct: 121 SFPSSPSVKGEMAVCTNELTLSTPLHMVTSGSSVPAEVDSDELNQMGLSSSGLRASQS-- 178

Query: 208 KGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYK 267
            G  P++ SDDGY WRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFE SHDGQITEIIYK
Sbjct: 179 -GSAPTVSSDDGYKWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFECSHDGQITEIIYK 237

Query: 268 GTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRDGS---MYGQMSHAMETNGTPDLS 324
           GTHDHPKPQ SRRY++G+ + + EER DK SSL  +D      YGQ+SHA+E +G P+LS
Sbjct: 238 GTHDHPKPQPSRRYASGSGLFMLEERFDKFSSLPSQDDKSPGAYGQVSHAIEPDGAPELS 297

Query: 325 P-VANDDSVEPDVDDDDQYSKR-RKMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGY 382
           P   NDD+ E   DD D +SKR R++DA   DVTPV+KPIREPRVVVQT SEVDILDDGY
Sbjct: 298 PGTTNDDTGEGAEDDKDPFSKRSRRLDAGGFDVTPVIKPIREPRVVVQTQSEVDILDDGY 357

Query: 383 RWRKYGQKVVRGNPNPR 399
           RWRKYGQKVVRGNPNPR
Sbjct: 358 RWRKYGQKVVRGNPNPR 374

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501612|ref|XP_003519618.1| PREDICTED: probable WRKY transcription factor 20-like [Glycine max]

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 260/401 (64%), Positives = 296/401 (73%), Gaps = 26/401 (6%)

Query: 24  SGAG-GGGARYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFF 82
           SG+G    ARYKLMSPAKLPISRSPCI IPPGLSP+SFLESPVLLSN+K E SPTTGS  
Sbjct: 29  SGSGQNSTARYKLMSPAKLPISRSPCITIPPGLSPTSFLESPVLLSNMKVEASPTTGSLR 88

Query: 83  K-PQAVH---ASVGPRTYSTTTVC--SNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEQ 136
           K  Q VH   AS    T+  TT C  +NT++  ++S FEF+P +RSN VPAD N   S+Q
Sbjct: 89  KLQQTVHGSMASAASATFPVTTACFNTNTVDARKSSFFEFKPLNRSNKVPADFNNHVSKQ 148

Query: 137 YVQTQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQP 196
             Q +G  + QSFASSP ++ E+TV SNELSL  P+QM ++    P +VD DE    G  
Sbjct: 149 STQVEGPGKAQSFASSPLVESEITVPSNELSLSSPVQMVSSSASAPVDVDLDEINHKGNT 208

Query: 197 TAGIQASHSDHKGGGPSMP----SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKL 252
             G+QASH + +G G S+     SDDGYNWRKYGQK VKGSEFPRSYYKCTHPNCEVKKL
Sbjct: 209 ATGLQASHVEVRGSGLSVAAEKTSDDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKL 268

Query: 253 FERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRD---GSMYG 309
           FERSHDGQITEI+YKGTHDHPKPQ S RYS G +M IQ ER DK +SL  RD    +MYG
Sbjct: 269 FERSHDGQITEIVYKGTHDHPKPQSSCRYSTGTVMYIQGERSDK-ASLAGRDDKASTMYG 327

Query: 310 QMSHAMETNGTPDLSPVA-NDDSVE----------PDVDDDDQYSKRRKMDALVADVTPV 358
           Q+SHA E N TP+ SPVA NDD +E           +VDDDD +SKRRKM+    D+TPV
Sbjct: 328 QVSHAAEPNSTPESSPVATNDDGLEGAGFVSNRNNEEVDDDDPFSKRRKMELGNVDITPV 387

Query: 359 VKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR 399
           VKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR
Sbjct: 388 VKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR 428

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569659|ref|XP_003553015.1| PREDICTED: probable WRKY transcription factor 20-like [Glycine max]

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 257/392 (65%), Positives = 290/392 (73%), Gaps = 25/392 (6%)

Query: 32  RYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSF-FKPQAVHAS 90
           RYKLMSPAKLPISRSPC+ IPPGLSP+SFLESPVLLSN+K EPSPTTGS     Q  H S
Sbjct: 28  RYKLMSPAKLPISRSPCVTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLSLLHQTAHGS 87

Query: 91  V---GPRTYSTTTVC--SNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEQYVQTQGQCQ 145
           V      T+  TTVC  +NT+++ + S FEF+PH+RSNMVPAD +   SE+  Q  GQ +
Sbjct: 88  VTSAASSTFPVTTVCFNTNTVDDRKPSFFEFKPHNRSNMVPADFDNHASEKSTQIDGQGK 147

Query: 146 TQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIQASHS 205
            Q+F SSP +K E    SNELSL  P+QM  +G     E D DE       T G+QAS  
Sbjct: 148 AQAFDSSPLVKNESASPSNELSLSSPVQMDCSGGSARVEGDLDELNPRSNITTGLQASQV 207

Query: 206 DHKGGGPSMP----SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQI 261
           D++G G S+     SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQI
Sbjct: 208 DNRGSGLSVAADRVSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQI 267

Query: 262 TEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRDGS---MYGQMSHAMETN 318
           TEIIYKGTHDHPKPQ +RRYSAG +MS+QEER DKV SLT RDG+   M GQ SH  E +
Sbjct: 268 TEIIYKGTHDHPKPQPNRRYSAGTIMSVQEERSDKV-SLTSRDGNGSYMCGQGSHLAEPD 326

Query: 319 GTPDLSPVANDDS-----------VEPDVDDDDQYSKRRKMDALVADVTPVVKPIREPRV 367
             P+LSPVA +D               +VDDDD +SKRRKMD  +AD+TPVVKPIREPRV
Sbjct: 327 SQPELSPVATNDGDLDGLGVLSNRNNDEVDDDDPFSKRRKMDLGIADITPVVKPIREPRV 386

Query: 368 VVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR 399
           VVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR
Sbjct: 387 VVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR 418

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737535|emb|CBI26736.3| unnamed protein product [Vitis vinifera]

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 258/388 (66%), Positives = 293/388 (75%), Gaps = 24/388 (6%)

Query: 36  MSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFKPQAVHASVGPRT 95
           MSPAKLPISRSPC+ IP GLSPSSFL+SPVLLSN+K EPSPTTGSF KPQ +H SVG   
Sbjct: 1   MSPAKLPISRSPCLTIPSGLSPSSFLDSPVLLSNMKVEPSPTTGSFAKPQMIHGSVGSSM 60

Query: 96  YSTTTVCSNT--LNEGEASCFEFRPHSRSNM----------VPADLNPQRSEQYVQTQGQ 143
           +S+T+ CSN+   +E ++  FEF+PH+ SN           V ADLN Q+ + ++  Q Q
Sbjct: 61  FSSTSNCSNSNTFDERKSGSFEFKPHTVSNSASGLFLVGSPVSADLNHQQVKPFIPVQAQ 120

Query: 144 CQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIQAS 203
               S   SPT+K EM   SNELSL  P  M T+    PAEVDSDE  Q G P  G+QAS
Sbjct: 121 HPDLSLMPSPTVKSEMMAPSNELSLCSPGHMVTSLESAPAEVDSDELNQQGHPNNGVQAS 180

Query: 204 HSDHKGGGPSM----PSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDG 259
            SD KG GPS      S+DGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFER+HDG
Sbjct: 181 QSDQKGIGPSAVVERSSEDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERAHDG 240

Query: 260 QITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRDG---SMYGQMSHAME 316
           QI EIIYKGTHDHPKPQ SRRY++G ++ +QEERPDKVSSL  RD    S+YGQM+H ++
Sbjct: 241 QIVEIIYKGTHDHPKPQPSRRYASGAILPVQEERPDKVSSLIGRDDKSPSIYGQMAHNID 300

Query: 317 TNGTPDLSPV-ANDDSVE----PDVDDDDQYSKRRKMDALVADVTPVVKPIREPRVVVQT 371
            NGTP+LSPV ANDD VE     +VD+DD  SKRRKM+    DVTPVVKPIREPRVVVQT
Sbjct: 301 PNGTPELSPVAANDDVVEGAILDEVDEDDPLSKRRKMEIGGIDVTPVVKPIREPRVVVQT 360

Query: 372 LSEVDILDDGYRWRKYGQKVVRGNPNPR 399
           LSEVDILDDGYRWRKYGQKVVRGNPNPR
Sbjct: 361 LSEVDILDDGYRWRKYGQKVVRGNPNPR 388

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357459955|ref|XP_003600259.1| WRKY transcription factor [Medicago truncatula] gi|355489307|gb|AES70510.1| WRKY transcription factor [Medicago truncatula]

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 254/395 (64%), Positives = 290/395 (73%), Gaps = 29/395 (7%)

Query: 30  GARYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFK-PQAVH 88
           GARYKLMSPAKLPISRSP + IPPGLSP+SFLESPVLLSN+K EPSPTTGS  +  Q VH
Sbjct: 45  GARYKLMSPAKLPISRSPVLTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLPRLQQTVH 104

Query: 89  ASVGPRT---YSTTTVC--SNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEQYVQTQGQ 143
             V   T   +  T+ C  SN++++G++S FEF+PHSRSNMVPAD      EQ  Q  GQ
Sbjct: 105 GFVTSSTSAAFPVTSACFNSNSVDDGKSSFFEFKPHSRSNMVPADFYNHACEQSTQIDGQ 164

Query: 144 CQTQSFASSPTIKGEMTVSSNELSLLG-PIQMATTGTIVPAEVDSDEPKQMGQPTAGIQA 202
              +SF SS  +K E  V S+E+SL   P+QM ++G     EVD DE    G    G+Q 
Sbjct: 165 GNVKSFVSSALVKSETAVPSDEISLSSSPVQMISSGASAHVEVDLDESNPSGSKATGLQV 224

Query: 203 SHSDHKGGGPSMP----SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHD 258
           S  D +G G S+     SDDGYNWRKYGQK VKG EFPRSYYKCTHPNCEVKKLFERSHD
Sbjct: 225 SQVDGRGNGLSVAADKASDDGYNWRKYGQKLVKGCEFPRSYYKCTHPNCEVKKLFERSHD 284

Query: 259 GQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRDG---SMYGQMSHAM 315
           GQITEI+YKGTHDHPKPQ SRR+S GNMMS+QEER D+ +SLT RD    + YGQMSHA 
Sbjct: 285 GQITEIVYKGTHDHPKPQPSRRFSGGNMMSVQEERSDR-ASLTSRDDKDFNNYGQMSHAA 343

Query: 316 ETNGTPDLSPV-ANDDSVE----------PDVDDDDQYSKRRKMDALVADVTPVVKPIRE 364
           E + TP+LSP+ AND S E           +VD+DD +SKRRKMD    D+TPVVKPIRE
Sbjct: 344 ERDSTPELSPIAANDGSPEGAGFLSNQNNDEVDEDDPFSKRRKMD---LDITPVVKPIRE 400

Query: 365 PRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR 399
           PRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR
Sbjct: 401 PRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR 435

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524334|ref|XP_003530784.1| PREDICTED: probable WRKY transcription factor 20 [Glycine max]

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 249/392 (63%), Positives = 285/392 (72%), Gaps = 25/392 (6%)

Query: 32  RYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSF-FKPQAVHAS 90
           RYKL+SPAKLPISRSPC+ I PGLSP+SFLESPVLLSN+K EPSPTTGS     Q  + S
Sbjct: 28  RYKLLSPAKLPISRSPCVTISPGLSPTSFLESPVLLSNMKVEPSPTTGSLSLLHQTAYGS 87

Query: 91  V---GPRTYSTTTVC--SNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEQYVQTQGQCQ 145
           +      T+  TTVC  SNT++E + S FEF+PHS SNMVPAD +   SE+  Q   Q +
Sbjct: 88  MTSAASATFPVTTVCFNSNTVDERKPSFFEFKPHSGSNMVPADFDNHASEKSTQIDSQGK 147

Query: 146 TQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIQASHS 205
            Q+F SS  +K E    SNELSL  P+QM  +G     E D DE       T G+QAS  
Sbjct: 148 AQAFDSSALVKNESASPSNELSLSSPVQMDCSGASARVEGDLDELNPRSNITTGLQASQV 207

Query: 206 DHKGGGPSMP----SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQI 261
           D++G G ++     SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQI
Sbjct: 208 DNRGSGLTVAAERVSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQI 267

Query: 262 TEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRD---GSMYGQMSHAMETN 318
           TEIIYKGTHDHPKPQ +RRYSAG +MS+QE+R DK +SLT RD    +M GQ SH  E +
Sbjct: 268 TEIIYKGTHDHPKPQPNRRYSAGTIMSVQEDRSDK-ASLTSRDDKGSNMCGQGSHLAEPD 326

Query: 319 GTPDLSPVANDDS-----------VEPDVDDDDQYSKRRKMDALVADVTPVVKPIREPRV 367
           G P+L PVA +D               +VDDDD +SKRRKMD  +AD+TPVVKPIREPRV
Sbjct: 327 GKPELLPVATNDGDLDGLGVLSNRNNDEVDDDDPFSKRRKMDVGIADITPVVKPIREPRV 386

Query: 368 VVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR 399
           VVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR
Sbjct: 387 VVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR 418

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494813|ref|XP_003617695.1| WRKY transcription factor [Medicago truncatula] gi|355519030|gb|AET00654.1| WRKY transcription factor [Medicago truncatula]

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/385 (59%), Positives = 267/385 (69%), Gaps = 43/385 (11%)

Query: 31  ARYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFKPQAVHAS 90
           ARYKLMSPAKLPISRSPCI IP G SP+S LESPVLLSN+K EPSPTTGS    QA++ S
Sbjct: 27  ARYKLMSPAKLPISRSPCITIPAGYSPTSLLESPVLLSNMKVEPSPTTGSLL--QALNCS 84

Query: 91  VGPRTYSTTTVCSNT--LNEGEASCFEFRPHSRSNMVPADLNPQRSEQYVQTQGQCQTQS 148
           +   T+  T+ C NT  +N  ++S FEF+P  R NMVPAD N   SE+  Q +G    QS
Sbjct: 85  MASATFPVTSACFNTSTVNGRKSSFFEFKPQDR-NMVPADFNNHVSEKSTQMEGSGNGQS 143

Query: 149 FASSPTIKGEMTVSSNELSLLG-PIQMATTGTIVPAEVDSDEPKQMGQPTAGIQASHSDH 207
           F SSP  + E+   SNELSL   P+ M ++G   P  V+SDEP   G    G Q+S    
Sbjct: 144 FRSSPLNENEIEDQSNELSLSSSPVHMVSSGASAPVNVNSDEPNHKGSTANGPQSS---- 199

Query: 208 KGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYK 267
                    +DGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYK
Sbjct: 200 ---------NDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYK 250

Query: 268 GTHDHPKPQLSRRYSAGNMMSIQEERPD-KVSSLTCRDGSMYGQMSHAMETNGTPDLSPV 326
           GTHDHPKPQ S RYSAG++MS Q ER D + SSL  RD           + + +P+ S V
Sbjct: 251 GTHDHPKPQPSNRYSAGSVMSTQGERSDNRASSLAVRDD----------KASNSPEQSVV 300

Query: 327 ANDDSVEPD------------VDDDDQYSKRRKMDALVADVTPVVKPIREPRVVVQTLSE 374
           A +D + P+            VDDDD +SK+RKM+   AD+ PVVKPIREPRVVVQT+SE
Sbjct: 301 ATND-LSPEGAGFVSTRTNDGVDDDDPFSKQRKMELGNADIIPVVKPIREPRVVVQTMSE 359

Query: 375 VDILDDGYRWRKYGQKVVRGNPNPR 399
           +DILDDGYRWRKYGQKVVRGNPNPR
Sbjct: 360 IDILDDGYRWRKYGQKVVRGNPNPR 384

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	406
TAIR|locus:2133852	557	WRKY20 [Arabidopsis thaliana (	0.869	0.633	0.573	3.8e-101
TAIR|locus:2177596	687	WRKY2 "WRKY DNA-binding protei	0.603	0.356	0.381	3.1e-57
TAIR|locus:2169354	309	WRKY26 "WRKY DNA-binding prote	0.226	0.297	0.536	4.2e-54
TAIR|locus:2131503	568	WRKY34 "WRKY DNA-binding prote	0.214	0.153	0.619	3.4e-51
TAIR|locus:2014799	514	WRKY4 "WRKY DNA-binding protei	0.263	0.208	0.518	4.8e-50
TAIR|locus:2063835	513	WRKY3 "WRKY DNA-binding protei	0.514	0.407	0.467	2.6e-49
TAIR|locus:2060805	393	WRKY25 "WRKY DNA-binding prote	0.453	0.468	0.452	9.6e-44
TAIR|locus:2057212	519	WRKY33 "AT2G38470" [Arabidopsi	0.467	0.366	0.461	5.3e-40
TAIR|locus:2049852	429	TTG2 "TRANSPARENT TESTA GLABRA	0.219	0.207	0.577	9e-36
TAIR|locus:2045049	487	ZAP1 "zinc-dependent activator	0.270	0.225	0.456	2.4e-34

TAIR|locus:2133852 WRKY20 [Arabidopsis thaliana (taxid:3702)]

 Score = 1003 (358.1 bits), Expect = 3.8e-101, P = 3.8e-101
 Identities = 218/380 (57%), Positives = 253/380 (66%)

Query:    32 RYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFKPQAVHASV 91
             RYKLMSPAKLPISRS  I IPPGLSP+SFLESPV +SN+K EPSPTTGS FKP+ VH S 
Sbjct:    37 RYKLMSPAKLPISRSTDITIPPGLSPTSFLESPVFISNIKPEPSPTTGSLFKPRPVHISA 96

Query:    92 GPRTYSTTTVCSNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEXXXXXXXXXXXXSFAS 151
                +Y+      NT  E ++S FEFRP + SNMV A+L   RSE            S   
Sbjct:    97 SSSSYTGRGFHQNTFTEQKSSEFEFRPPA-SNMVYAELGKIRSEPPVHFQGQGHGSSH-- 153

Query:   152 SPTIKGEMTVSSNELSL-LGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIQASHSDHKGG 210
             SP+   +   SS+ELS    P QM  T + +PA  D +E          IQ S +D +G 
Sbjct:   154 SPSSISDAAGSSSELSRPTPPCQMTPTSSDIPAGSDQEE---------SIQTSQNDSRGS 204

Query:   211 GPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTH 270
              PS+ +DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQIT+IIYKGTH
Sbjct:   205 TPSILADDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTH 264

Query:   271 DHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRD--GSMYGQMSHAMETNGTPDLSPVAN 328
             DHPKPQ  RR S G  M+ QEER DK  S T RD  GS    +S+  E  G P++ P++ 
Sbjct:   265 DHPKPQPGRRNSGG--MAAQEERLDKYPSSTGRDEKGSGVYNLSNPNEQTGNPEVPPISA 322

Query:   329 XXXXXXXXXXXXQ---------YSKRRKMDALVADVTPVVKPIREPRVVVQTLSEVDILD 379
                                   +SKRR+M+  + ++TP+VKPIREPRVVVQTLSEVDILD
Sbjct:   323 SDDGGEAAASNRNKDEPDDDDPFSKRRRMEGAM-EITPLVKPIREPRVVVQTLSEVDILD 381

Query:   380 DGYRWRKYGQKVVRGNPNPR 399
             DGYRWRKYGQKVVRGNPNPR
Sbjct:   382 DGYRWRKYGQKVVRGNPNPR 401

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009961 "response to 1-aminocyclopropane-1-carboxylic acid" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2177596 WRKY2 "WRKY DNA-binding protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 390 (142.3 bits), Expect = 3.1e-57, Sum P(2) = 3.1e-57
 Identities = 108/283 (38%), Positives = 142/283 (50%)

Query:    45 RSPCIMIP-PGLSPSSFLESPVLLSNVKAEPSPTTGSF-FKPQAVHASVGPRTYSTTTVC 102
             RSPC+ I  PGLSP++ LESPV LSN  A+PSPTTG F F P      V     S+    
Sbjct:   108 RSPCLTISSPGLSPATLLESPVFLSNPLAQPSPTTGKFPFLP-----GVNGNALSSEKAK 162

Query:   103 SNTLNEGEASCFEFRPHSRSN---------MVPADLNP--QRSEXXXXXXXXXXXXSFAS 151
                 ++  AS F F P SRS+         M+  D      RS                 
Sbjct:   163 DEFFDDIGAS-FSFHPVSRSSSSFFQGTTEMMSVDYGNYNNRSSSHQSAEEVKPGSENIE 221

Query:   152 SPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIQASHSDHKGGG 211
             S  + G  T + N  +    +   TT T +   VD  E ++        +    D   GG
Sbjct:   222 SSNLYGIETDNQNGQNKTSDV---TTNTSLET-VDHQEEEE--------EQRRGDSMAGG 269

Query:   212 PSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHD 271
                P++DGYNWRKYGQK VKGSE+PRSYYKCT+PNC+VKK  ERS +G ITEIIYKG H+
Sbjct:   270 A--PAEDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCQVKKKVERSREGHITEIIYKGAHN 327

Query:   272 HPKPQLSRR----YSAGNMMSIQEERPDKVSS-LTCRDGSMYG 309
             H KP  +RR          +  Q+++ D  ++ ++C +    G
Sbjct:   328 HLKPPPNRRSGMQVDGTEQVEQQQQQRDSAATWVSCNNTQQQG 370

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009942 "longitudinal axis specification" evidence=IMP

GO:0030010 "establishment of cell polarity" evidence=IMP

TAIR|locus:2169354 WRKY26 "WRKY DNA-binding protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 4.2e-54, Sum P(3) = 4.2e-54
 Identities = 51/95 (53%), Positives = 64/95 (67%)

Query:   190 PKQMGQPTAGIQASHSDHKGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEV 249
             P  + QP   +    S+      +  SDDGYNWRKYGQK VKGSE PRSY+KCT+PNC  
Sbjct:    92 PSMVTQPLPQLDLFKSEIMSSNKT--SDDGYNWRKYGQKQVKGSENPRSYFKCTYPNCLT 149

Query:   250 KKLFERSH-DGQITEIIYKGTHDHPKPQLSRRYSA 283
             KK  E S   GQ+ EI+YKG+H+HPKPQ ++R S+
Sbjct:   150 KKKVETSLVKGQMIEIVYKGSHNHPKPQSTKRSSS 184

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

TAIR|locus:2131503 WRKY34 "WRKY DNA-binding protein 34" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.4e-51, Sum P(3) = 3.4e-51
 Identities = 57/92 (61%), Positives = 65/92 (70%)

Query:   209 GG-GPSM----PSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITE 263
             GG G SM    P+DDGYNWRKYGQK VKGSE+PRSYYKCTHPNCE KK  ERS +G I E
Sbjct:   165 GGLGDSMACCAPADDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEAKKKVERSREGHIIE 224

Query:   264 IIYKGTHDHPKPQLSRRYSAGNMMSIQEERPD 295
             IIY G H H KP  +RR   G+  + Q+ + D
Sbjct:   225 IIYTGDHIHSKPPPNRRSGIGSSGTGQDMQID 256

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009409 "response to cold" evidence=IEP

GO:0009846 "pollen germination" evidence=IMP

TAIR|locus:2014799 WRKY4 "WRKY DNA-binding protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 4.8e-50, Sum P(3) = 4.8e-50
 Identities = 56/108 (51%), Positives = 71/108 (65%)

Query:   183 AEVDSDEPKQMGQPTAGIQA-SHSDHKGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYK 241
             A++ +  P    + T+ +    H   +      P+DDGYNWRKYGQK VKGSEFPRSYYK
Sbjct:   194 AQIPTSAPLPAQRETSDVTIIEHRSQQPLNVDKPADDGYNWRKYGQKQVKGSEFPRSYYK 253

Query:   242 CTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSI 289
             CT+P C VKK  ERS DGQ+TEIIYKG H+H  PQ ++R +  N  +I
Sbjct:   254 CTNPGCPVKKKVERSLDGQVTEIIYKGQHNHEPPQNTKRGNKDNTANI 301

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

TAIR|locus:2063835 WRKY3 "WRKY DNA-binding protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
 Identities = 101/216 (46%), Positives = 125/216 (57%)

Query:   189 EPKQMGQPTAGIQASHSDHKGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCE 248
             E  Q  + T+ I       +      P+DDGYNWRKYGQK VKGS+FPRSYYKCTHP C 
Sbjct:   222 ETSQGQRETSEISVFEHRSQPQNADKPADDGYNWRKYGQKQVKGSDFPRSYYKCTHPACP 281

Query:   249 VKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMS--IQEERPDKVSSL--TCRD 304
             VKK  ERS DGQ+TEIIYKG H+H  PQ  R  + G+  S  I  +     SSL  + RD
Sbjct:   282 VKKKVERSLDGQVTEIIYKGQHNHELPQ-KRGNNNGSCKSSDIANQFQTSNSSLNKSKRD 340

Query:   305 GSMYGQMSHAMETNGTPDLSPVANXXXXXXXXXXXXQYSKRRKMDALVAD-VTPVVKPIR 363
                  Q++   + +   D   V N               KRR  +  V++ V    + + 
Sbjct:   341 QET-SQVTTTEQMSEASDSEEVGNAETSVGERHEDEPDPKRRNTEVRVSEPVASSHRTVT 399

Query:   364 EPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR 399
             EPR++VQT SEVD+LDDGYRWRKYGQKVV+GNP PR
Sbjct:   400 EPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPR 435

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2060805 WRKY25 "WRKY DNA-binding protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 400 (145.9 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
 Identities = 86/190 (45%), Positives = 117/190 (61%)

Query:   213 SMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDH 272
             S  S+DGY WRKYGQK VK SE PRSY+KCT+P+C  KK+ E + DGQITEIIYKG H+H
Sbjct:   162 SRNSNDGYGWRKYGQKQVKKSENPRSYFKCTYPDCVSKKIVETASDGQITEIIYKGGHNH 221

Query:   273 PKPQLSRRYSAGNM-MSIQEERPDKVSSLTCRDGSMYGQMSHAMETNGTPDLSPVANXXX 331
             PKP+ ++R S  ++  S+   R    +S+       + Q  ++  +    DL   +    
Sbjct:   222 PKPEFTKRPSQSSLPSSVNGRRLFNPASVVSEP---HDQSENSSISFDYSDLEQKSFKSE 278

Query:   332 XXXXXXXXXQYS-KRRKMDALVADVT-PVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQ 389
                      Q   KR K +     ++  V K ++EPRVVVQT+S++D+L DG+RWRKYGQ
Sbjct:   279 YGEIDEEEEQPEMKRMKREGEDEGMSIEVSKGVKEPRVVVQTISDIDVLIDGFRWRKYGQ 338

Query:   390 KVVRGNPNPR 399
             KVV+GN NPR
Sbjct:   339 KVVKGNTNPR 348

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2057212 WRKY33 "AT2G38470" [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 95/206 (46%), Positives = 119/206 (57%)

Query:   210 GGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGT 269
             G      +DGYNWRKYGQK VKGSE PRSYYKCT PNC  KK  ERS +GQITEI+YKG+
Sbjct:   177 GREQRKGEDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLEGQITEIVYKGS 236

Query:   270 HDHPKPQLSRRYSAGNMM--------SIQEER------PDKVSSLTCRDG-SMYGQMSHA 314
             H+HPKPQ +RR S+ +          S+   R      P+  +S    D   M  + +  
Sbjct:   237 HNHPKPQSTRRSSSSSSTFHSAVYNASLDHNRQASSDQPNSNNSFHQSDSFGMQQEDNTT 296

Query:   315 METNGTPDLSPVANXXXXXXXXXXXXQYSKRRKMDALVADVTPV-VKPIREPRVVVQTLS 373
              ++ G  +    ++              +KR K D           K +REPR+VVQT S
Sbjct:   297 SDSVGDDEFEQGSSIVSRDEEDCGSEPEAKRWKGDNETNGGNGGGSKTVREPRIVVQTTS 356

Query:   374 EVDILDDGYRWRKYGQKVVRGNPNPR 399
             ++DILDDGYRWRKYGQKVV+GNPNPR
Sbjct:   357 DIDILDDGYRWRKYGQKVVKGNPNPR 382

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0010120 "camalexin biosynthetic process" evidence=IMP

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009408 "response to heat" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0010508 "positive regulation of autophagy" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

TAIR|locus:2049852 TTG2 "TRANSPARENT TESTA GLABRA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 9.0e-36, Sum P(3) = 9.0e-36
 Identities = 56/97 (57%), Positives = 67/97 (69%)

Query:   216 SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKP 275
             S DGYNWRKYGQK VKGSE PRSYYKCTHP C VKK  ERS +GQ++EI+Y+G H+H KP
Sbjct:   164 SVDGYNWRKYGQKQVKGSECPRSYYKCTHPKCPVKKKVERSVEGQVSEIVYQGEHNHSKP 223

Query:   276 Q--LSRRYSAGNMMSIQEERPDKVSSLTCRDGSMYGQ 310
                L RR S+      Q+  P  ++S    +GSM GQ
Sbjct:   224 SCPLPRRASSSISSGFQKP-PKSIAS----EGSM-GQ 254

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010214 "seed coat development" evidence=IMP

GO:0009957 "epidermal cell fate specification" evidence=RCA;IMP

GO:0001708 "cell fate specification" evidence=RCA

TAIR|locus:2045049 ZAP1 "zinc-dependent activator protein-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 2.4e-34, Sum P(2) = 2.4e-34
 Identities = 52/114 (45%), Positives = 72/114 (63%)

Query:   165 ELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIQASHSDHKGGGPSMPS---DDGYN 221
             EL  L P  +A+   +  A   S++  ++ + ++G  +  S  +G  P +     +DGYN
Sbjct:    57 ELEKLVPHTVASQSEVDVASPVSEKAPKVSE-SSGALSLQSGSEGNSPFIREKVMEDGYN 115

Query:   222 WRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKP 275
             WRKYGQK VKG+EF RSYY+CTHPNC+ KK  ERS  GQ+ + +Y G HDHPKP
Sbjct:   116 WRKYGQKLVKGNEFVRSYYRCTHPNCKAKKQLERSAGGQVVDTVYFGEHDHPKP 169

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93WV0	WRK20_ARATH	No assigned EC number	0.6010	0.8719	0.6355	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	406
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	8e-36
smart00774	59	smart00774, WRKY, DNA binding domain	3e-30
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	8e-11
smart00774	59	smart00774, WRKY, DNA binding domain	1e-10

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  125 bits (315), Expect = 8e-36
 Identities = 43/60 (71%), Positives = 46/60 (76%), Gaps = 1/60 (1%)

Query: 216 SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 274
            DDGYNWRKYGQK VKGS FPRSYY+CT P C VKK  ERS  D QI EI Y+G H+HPK
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHPK 60

Length = 60

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  110 bits (278), Expect = 3e-30
 Identities = 32/58 (55%), Positives = 40/58 (68%), Gaps = 2/58 (3%)

Query: 217 DDGYNWRKYGQKHVKGSEFPRSYYKCTH-PNCEVKKLFERS-HDGQITEIIYKGTHDH 272
           DDGY WRKYGQK +KGS +PRSYY+CT+   C  KK  +RS  D  + E+ Y+G H H
Sbjct: 2   DDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score = 56.9 bits (138), Expect = 8e-11
 Identities = 17/22 (77%), Positives = 19/22 (86%)

Query: 378 LDDGYRWRKYGQKVVRGNPNPR 399
           LDDGY WRKYGQK V+G+P PR
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPR 22

Length = 60

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score = 56.3 bits (137), Expect = 1e-10
 Identities = 17/22 (77%), Positives = 21/22 (95%)

Query: 378 LDDGYRWRKYGQKVVRGNPNPR 399
           LDDGY+WRKYGQKV++G+P PR
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYPR 22

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	406
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.95
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.94
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.76
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.74
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	88.75
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	85.58

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.95  E-value=1.9e-29  Score=195.66  Aligned_cols=59  Identities=61%  Similarity=1.230  Sum_probs=50.9

Q ss_pred             CCCCccccccCcccCCCCCCCCCccccCCcccccchheeccc-CCceEEEEecccCCCCC
Q 015494          216 SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK  274 (406)
Q Consensus       216 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~akK~Ver~~-dg~i~~i~Y~G~HnH~~  274 (406)
                      .+|||+|||||||.|+|+++||+||||++.+|+|+|+|||+. |+.+++|+|+|+|||++
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~k   60 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHPK   60 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS--
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCCC
Confidence            379999999999999999999999999999999999999987 88999999999999985

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.94  E-value=2.1e-28  Score=189.42  Aligned_cols=57  Identities=58%  Similarity=1.134  Sum_probs=54.8

Q ss_pred             CCCCccccccCcccCCCCCCCCCccccCC-cccccchheeccc-CCceEEEEecccCCC
Q 015494          216 SDDGYNWRKYGQKHVKGSEFPRSYYKCTH-PNCEVKKLFERSH-DGQITEIIYKGTHDH  272 (406)
Q Consensus       216 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~-~~C~akK~Ver~~-dg~i~~i~Y~G~HnH  272 (406)
                      .+|||.|||||||.|+|+++||+|||||+ ++|+|+|+|||+. |+++++|+|+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            37999999999999999999999999999 8999999999986 889999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.76  E-value=8.2e-20  Score=141.92  Aligned_cols=29  Identities=59%  Similarity=1.098  Sum_probs=25.4

Q ss_pred             CCCcccccccCccccCCCCCCCceeeccC
Q 015494          378 LDDGYRWRKYGQKVVRGNPNPRYVSNLMI  406 (406)
Q Consensus       378 ldDGYrWRKYGQK~VKGnp~PRsYYrCT~  406 (406)
                      |||||+|||||||.|+||+|||+|||||+
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~   29 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTH   29 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEEC
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccc
Confidence            69999999999999999999999999985

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.74  E-value=4.1e-19  Score=137.77  Aligned_cols=29  Identities=59%  Similarity=1.123  Sum_probs=27.8

Q ss_pred             CCCcccccccCccccCCCCCCCceeeccC
Q 015494          378 LDDGYRWRKYGQKVVRGNPNPRYVSNLMI  406 (406)
Q Consensus       378 ldDGYrWRKYGQK~VKGnp~PRsYYrCT~  406 (406)
                      +||||+|||||||.||||+|||+|||||+
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~   29 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTY   29 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccc
Confidence            58999999999999999999999999985

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.75  E-value=0.16  Score=37.69  Aligned_cols=49  Identities=22%  Similarity=0.577  Sum_probs=23.9

Q ss_pred             CCCCCccccccCcccCCCCCCCCCccccCCc---ccccchheecccCCceEEEEecccCCC
Q 015494          215 PSDDGYNWRKYGQKHVKGSEFPRSYYKCTHP---NCEVKKLFERSHDGQITEIIYKGTHDH  272 (406)
Q Consensus       215 ~~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~---~C~akK~Ver~~dg~i~~i~Y~G~HnH  272 (406)
                      +.-|||.-+++...      ..+.|++|+..   +|.|+=.+. ..++.  .+...++|||
T Consensus        11 L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~-~~~~~--~~~~~~~HnH   62 (62)
T PF04500_consen   11 LVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD-AGDGR--VVRTNGEHNH   62 (62)
T ss_dssp             EEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE---TTE--EEE-S---SS
T ss_pred             EEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE-CCCCE--EEECCCccCC
Confidence            44578776654443      45689999985   899987666 22333  3345599999

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=85.58  E-value=0.55  Score=37.82  Aligned_cols=30  Identities=23%  Similarity=0.472  Sum_probs=25.3

Q ss_pred             cccccchheecccCCceEEEEecccCCCCC
Q 015494          245 PNCEVKKLFERSHDGQITEIIYKGTHDHPK  274 (406)
Q Consensus       245 ~~C~akK~Ver~~dg~i~~i~Y~G~HnH~~  274 (406)
                      -+|+|+=.|.+..+|....+.+..+|||+.
T Consensus        60 tgC~a~i~v~~~~~~~w~v~~~~~~HNH~L   89 (91)
T PF03101_consen   60 TGCKARINVKRRKDGKWRVTSFVLEHNHPL   89 (91)
T ss_pred             cCCCEEEEEEEccCCEEEEEECcCCcCCCC
Confidence            379998888776688888889999999985

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	406
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		2e-14
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		2e-07
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		5e-13
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		2e-10

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Query: 217 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFER-SHDGQITEIIYKGTHDHPKP 275
           +DGY WRKYGQK VKGS +PRSYY+C+ P C VKK  ER SHD ++    Y+G HDH  P
Sbjct: 15  NDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/34 (64%), Positives = 28/34 (82%)
Query: 366 RVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR 399
           R+VV T +  DI++DGYRWRKYGQK V+G+P PR
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPR 35

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 217 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPKP 275
           DDGY WRKYGQK VKG+ +PRSYYKCT P C V+K  ER+  D +     Y+G H+H  P
Sbjct: 18  DDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/31 (87%), Positives = 29/31 (93%)
Query: 369 VQTLSEVDILDDGYRWRKYGQKVVRGNPNPR 399
           VQT SEVD+LDDGYRWRKYGQKVV+GNP PR
Sbjct: 8   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPR 38

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	406
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	9e-27
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	3e-16
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	1e-26
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	2e-18

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  100 bits (252), Expect = 9e-27
 Identities = 36/60 (60%), Positives = 43/60 (71%), Gaps = 1/60 (1%)

Query: 217 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERS-HDGQITEIIYKGTHDHPKP 275
           +DGY WRKYGQK VKGS +PRSYY+C+ P C VKK  ERS HD ++    Y+G HDH  P
Sbjct: 15  NDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score = 72.1 bits (177), Expect = 3e-16
 Identities = 22/34 (64%), Positives = 28/34 (82%)

Query: 366 RVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR 399
           R+VV T +  DI++DGYRWRKYGQK V+G+P PR
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPR 35

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  100 bits (251), Expect = 1e-26
 Identities = 34/60 (56%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 217 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERS-HDGQITEIIYKGTHDHPKP 275
           DDGY WRKYGQK VKG+ +PRSYYKCT P C V+K  ER+  D +     Y+G H+H  P
Sbjct: 18  DDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score = 78.2 bits (193), Expect = 2e-18
 Identities = 27/37 (72%), Positives = 29/37 (78%)

Query: 363 REPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR 399
                 VQT SEVD+LDDGYRWRKYGQKVV+GNP PR
Sbjct: 2   SSGSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPR 38

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	406
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	99.96
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	99.96
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	99.87
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	99.87

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=99.96  E-value=5.7e-30  Score=205.96  Aligned_cols=64  Identities=55%  Similarity=1.029  Sum_probs=60.0

Q ss_pred             CCCCCCCccccccCcccCCCCCCCCCccccCCcccccchheeccc-CCceEEEEecccCCCCCCC
Q 015494          213 SMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPKPQ  276 (406)
Q Consensus       213 ~~~~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~akK~Ver~~-dg~i~~i~Y~G~HnH~~p~  276 (406)
                      ..+.+|||+|||||||.|||++|||+|||||+.+|+|+|+|||+. |+++++|+|+|+|||+.|.
T Consensus        11 ~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A           11 FDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             SSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            446789999999999999999999999999999999999999986 7789999999999999885

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=99.96  E-value=7e-30  Score=206.29  Aligned_cols=64  Identities=53%  Similarity=0.998  Sum_probs=59.6

Q ss_pred             CCCCCCCccccccCcccCCCCCCCCCccccCCcccccchheeccc-CCceEEEEecccCCCCCCC
Q 015494          213 SMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPKPQ  276 (406)
Q Consensus       213 ~~~~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~akK~Ver~~-dg~i~~i~Y~G~HnH~~p~  276 (406)
                      ..+.+|||+|||||||.|||++|||+|||||+++|+|+|+|||+. |+++++|+|+|+|||+.|.
T Consensus        14 ~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A           14 VDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             CCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             CCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            346789999999999999999999999999999999999999975 7889999999999999873

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=99.87  E-value=1.5e-23  Score=168.63  Aligned_cols=42  Identities=52%  Similarity=0.925  Sum_probs=40.4

Q ss_pred             ceeEEecccccccCCCcccccccCccccCCCCCCCceeeccC
Q 015494          365 PRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRYVSNLMI  406 (406)
Q Consensus       365 prvvvqt~se~dildDGYrWRKYGQK~VKGnp~PRsYYrCT~  406 (406)
                      .||+|+|.++++++||||+|||||||.||||+|||+|||||.
T Consensus         1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~   42 (76)
T 2ayd_A            1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS   42 (76)
T ss_dssp             CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECS
T ss_pred             CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCC
Confidence            489999999999999999999999999999999999999984

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=99.87  E-value=1.4e-23  Score=169.47  Aligned_cols=42  Identities=64%  Similarity=0.986  Sum_probs=37.3

Q ss_pred             ceeEEecccccccCCCcccccccCccccCCCCCCCceeeccC
Q 015494          365 PRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRYVSNLMI  406 (406)
Q Consensus       365 prvvvqt~se~dildDGYrWRKYGQK~VKGnp~PRsYYrCT~  406 (406)
                      .+|+|||.++++++||||+|||||||.||||+|||+|||||.
T Consensus         4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~   45 (78)
T 1wj2_A            4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT   45 (78)
T ss_dssp             ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC
T ss_pred             ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCc
Confidence            479999999999999999999999999999999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	406
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	2e-26
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	1e-13

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 99.1 bits (247), Expect = 2e-26
 Identities = 34/62 (54%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 215 PSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERS-HDGQITEIIYKGTHDHP 273
             DDGY WRKYGQK VKG+ +PRSYYKCT P C V+K  ER+  D +     Y+G H+H 
Sbjct: 9   LLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHD 68

Query: 274 KP 275
            P
Sbjct: 69  LP 70

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 63.7 bits (155), Expect = 1e-13
 Identities = 27/32 (84%), Positives = 29/32 (90%)

Query: 369 VQTLSEVDILDDGYRWRKYGQKVVRGNPNPRY 400
           VQT SEVD+LDDGYRWRKYGQKVV+GNP PR 
Sbjct: 1   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRS 32

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	406
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	99.96
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	99.85

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=2.5e-30  Score=203.55  Aligned_cols=64  Identities=53%  Similarity=0.998  Sum_probs=59.8

Q ss_pred             CCCCCCCccccccCcccCCCCCCCCCccccCCcccccchheeccc-CCceEEEEecccCCCCCCC
Q 015494          213 SMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPKPQ  276 (406)
Q Consensus       213 ~~~~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~akK~Ver~~-dg~i~~i~Y~G~HnH~~p~  276 (406)
                      ...++|||.|||||||.|+|+++||+||||++++|+|+|+|||+. |+.+++|+|+|+|||+.|.
T Consensus         7 ~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           7 VDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             cccCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            346799999999999999999999999999999999999999986 7899999999999999873

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.85  E-value=3.7e-23  Score=162.41  Aligned_cols=38  Identities=71%  Similarity=1.143  Sum_probs=36.4

Q ss_pred             EecccccccCCCcccccccCccccCCCCCCCceeeccC
Q 015494          369 VQTLSEVDILDDGYRWRKYGQKVVRGNPNPRYVSNLMI  406 (406)
Q Consensus       369 vqt~se~dildDGYrWRKYGQK~VKGnp~PRsYYrCT~  406 (406)
                      |+|.+|++++||||+|||||||.|||++|||+|||||.
T Consensus         1 v~t~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~   38 (71)
T d1wj2a_           1 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT   38 (71)
T ss_dssp             CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC
T ss_pred             CccccccccCCCCcEecccCceeccCCCCceEEEEccc
Confidence            67899999999999999999999999999999999984