Citrus Sinensis ID: 015534
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 405 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SU94 | 390 | Protein arginine N-methyl | yes | no | 0.913 | 0.948 | 0.794 | 1e-178 | |
| Q0J2C6 | 387 | Probable protein arginine | yes | no | 0.804 | 0.842 | 0.861 | 1e-174 | |
| A2Z0C0 | 387 | Probable protein arginine | N/A | no | 0.804 | 0.842 | 0.861 | 1e-174 | |
| O82210 | 366 | Probable protein arginine | no | no | 0.832 | 0.920 | 0.822 | 1e-168 | |
| Q9JIF0 | 371 | Protein arginine N-methyl | yes | no | 0.891 | 0.973 | 0.561 | 1e-119 | |
| Q99873 | 361 | Protein arginine N-methyl | yes | no | 0.881 | 0.988 | 0.565 | 1e-119 | |
| Q28F07 | 351 | Protein arginine N-methyl | yes | no | 0.844 | 0.974 | 0.575 | 1e-118 | |
| Q5RGQ2 | 419 | Protein arginine N-methyl | yes | no | 0.807 | 0.780 | 0.602 | 1e-118 | |
| Q8AV13 | 369 | Protein arginine N-methyl | N/A | no | 0.854 | 0.937 | 0.580 | 1e-118 | |
| Q63009 | 353 | Protein arginine N-methyl | yes | no | 0.871 | 1.0 | 0.569 | 1e-117 |
| >sp|Q9SU94|ANM11_ARATH Protein arginine N-methyltransferase 1.1 OS=Arabidopsis thaliana GN=PRMT11 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 624 bits (1609), Expect = e-178, Method: Compositional matrix adjust.
Identities = 301/379 (79%), Positives = 333/379 (87%), Gaps = 9/379 (2%)
Query: 29 HNTITRFADAEEDDATASSILDDSVAAPVDGTAIEDEAMCDADVSMIDGE--DDKTSADY 86
NT RF DA+ED+ S VA +DE+M DA S E DD TSADY
Sbjct: 19 QNTKIRFEDADEDEVAEGS----GVAGE---ETPQDESMFDAGESADTAEVTDDTTSADY 71
Query: 87 YFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAA 146
YFDSYSHFGIHEEMLKDVVRTK+YQNVIYQNKFL KDK+VLDVGAGTGILSLFCAKAGAA
Sbjct: 72 YFDSYSHFGIHEEMLKDVVRTKTYQNVIYQNKFLIKDKIVLDVGAGTGILSLFCAKAGAA 131
Query: 147 HVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFEN 206
HVYAVECSQMA+MAK+IV+ANGFS+VITVLKGKIEEIELP KVD+IISEWMGYFLLFEN
Sbjct: 132 HVYAVECSQMADMAKEIVKANGFSDVITVLKGKIEEIELPTPKVDVIISEWMGYFLLFEN 191
Query: 207 MLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAM 266
ML++VLYARDKWLV+ G+VLPDKASL+LTAIED+EYK+DKIEFWN+VYGFDMSCIKK+AM
Sbjct: 192 MLDSVLYARDKWLVEGGVVLPDKASLHLTAIEDSEYKEDKIEFWNSVYGFDMSCIKKKAM 251
Query: 267 MEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTF 326
MEPLVDTVDQNQIVT+ +LLKTMDISKM GDASFTAPFKLVAQRNDYIHALVAYFDV+F
Sbjct: 252 MEPLVDTVDQNQIVTDSRLLKTMDISKMSSGDASFTAPFKLVAQRNDYIHALVAYFDVSF 311
Query: 327 TKCHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLK 386
T CHKL+GFSTGPKSRATHWKQTVLYLEDVLTICEGE I+G+++V+PNKKNPRD+DI L
Sbjct: 312 TMCHKLLGFSTGPKSRATHWKQTVLYLEDVLTICEGETITGTMSVSPNKKNPRDIDIKLS 371
Query: 387 YSLQGRHSAISRIQYYKMR 405
YSL G+H ISR Q+YKMR
Sbjct: 372 YSLNGQHCKISRTQHYKMR 390
|
Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in a glycine and arginine-rich domain. Type I arginine methyltransferase active on both histones and non-histone proteins. Required for leaves and flowers development. Mediates the methylation of MBD7. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 2EC: 5 |
| >sp|Q0J2C6|ANM1_ORYSJ Probable protein arginine N-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=PRMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 610 bits (1573), Expect = e-174, Method: Compositional matrix adjust.
Identities = 281/326 (86%), Positives = 305/326 (93%)
Query: 80 DKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLF 139
DKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVI QN FLFKDK+VLDVGAGTGILSLF
Sbjct: 62 DKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVITQNSFLFKDKIVLDVGAGTGILSLF 121
Query: 140 CAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199
CAKAGA HVYA+ECSQMA+MAK+IV+ NG+SNVITV+KGK+EEIELPV KVD+IISEWMG
Sbjct: 122 CAKAGAKHVYAIECSQMADMAKEIVKTNGYSNVITVIKGKVEEIELPVPKVDVIISEWMG 181
Query: 200 YFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMS 259
YFLLFENMLNTVLYARDKWL D G+VLPDKASL+LTAIEDAEYK+DKIEFWNNVYGFDM
Sbjct: 182 YFLLFENMLNTVLYARDKWLADGGVVLPDKASLHLTAIEDAEYKEDKIEFWNNVYGFDMR 241
Query: 260 CIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALV 319
CIKKQAMMEPLVDTVD NQIVTNCQLLKTMDISKM PGDASFT PFKLVA+RNDYIHALV
Sbjct: 242 CIKKQAMMEPLVDTVDANQIVTNCQLLKTMDISKMTPGDASFTVPFKLVAERNDYIHALV 301
Query: 320 AYFDVTFTKCHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPR 379
AYF+V+FTKCHK+MGFSTGP+S+ATHWKQTVLYLEDVLTICEGE I+GS+TV PNKKNPR
Sbjct: 302 AYFNVSFTKCHKMMGFSTGPRSKATHWKQTVLYLEDVLTICEGETITGSMTVTPNKKNPR 361
Query: 380 DVDIMLKYSLQGRHSAISRIQYYKMR 405
D+DI L Y+L G +SR Q+YKMR
Sbjct: 362 DIDIKLCYALSGHRCQVSRTQHYKMR 387
|
Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in a glycine and arginine-rich domain (can methylate histones). Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A2Z0C0|ANM1_ORYSI Probable protein arginine N-methyltransferase 1 OS=Oryza sativa subsp. indica GN=PRMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 610 bits (1573), Expect = e-174, Method: Compositional matrix adjust.
Identities = 281/326 (86%), Positives = 305/326 (93%)
Query: 80 DKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLF 139
DKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVI QN FLFKDK+VLDVGAGTGILSLF
Sbjct: 62 DKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVITQNSFLFKDKIVLDVGAGTGILSLF 121
Query: 140 CAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199
CAKAGA HVYA+ECSQMA+MAK+IV+ NG+SNVITV+KGK+EEIELPV KVD+IISEWMG
Sbjct: 122 CAKAGAKHVYAIECSQMADMAKEIVKTNGYSNVITVIKGKVEEIELPVPKVDVIISEWMG 181
Query: 200 YFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMS 259
YFLLFENMLNTVLYARDKWL D G+VLPDKASL+LTAIEDAEYK+DKIEFWNNVYGFDM
Sbjct: 182 YFLLFENMLNTVLYARDKWLADGGVVLPDKASLHLTAIEDAEYKEDKIEFWNNVYGFDMR 241
Query: 260 CIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALV 319
CIKKQAMMEPLVDTVD NQIVTNCQLLKTMDISKM PGDASFT PFKLVA+RNDYIHALV
Sbjct: 242 CIKKQAMMEPLVDTVDANQIVTNCQLLKTMDISKMTPGDASFTVPFKLVAERNDYIHALV 301
Query: 320 AYFDVTFTKCHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPR 379
AYF+V+FTKCHK+MGFSTGP+S+ATHWKQTVLYLEDVLTICEGE I+GS+TV PNKKNPR
Sbjct: 302 AYFNVSFTKCHKMMGFSTGPRSKATHWKQTVLYLEDVLTICEGETITGSMTVTPNKKNPR 361
Query: 380 DVDIMLKYSLQGRHSAISRIQYYKMR 405
D+DI L Y+L G +SR Q+YKMR
Sbjct: 362 DIDIKLCYALSGHRCQVSRTQHYKMR 387
|
Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in a glycine and arginine-rich domain (can methylate histones). Oryza sativa subsp. indica (taxid: 39946) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O82210|ANM12_ARATH Probable protein arginine N-methyltransferase 1.2 OS=Arabidopsis thaliana GN=PRMT12 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 591 bits (1523), Expect = e-168, Method: Compositional matrix adjust.
Identities = 283/344 (82%), Positives = 313/344 (90%), Gaps = 7/344 (2%)
Query: 69 DADVSMIDGEDDK-------TSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLF 121
DAD SM DG+D+ TSADYYFDSYSHFGIHEEMLKDVVRTKSYQ+VIY+NKFL
Sbjct: 23 DADESMHDGDDNNADVADDITSADYYFDSYSHFGIHEEMLKDVVRTKSYQDVIYKNKFLI 82
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIE 181
KDK+VLDVGAGTGILSLFCAKAGAAHVYAVECSQMA+ AK+IV++NGFS+VITVLKGKIE
Sbjct: 83 KDKIVLDVGAGTGILSLFCAKAGAAHVYAVECSQMADTAKEIVKSNGFSDVITVLKGKIE 142
Query: 182 EIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAE 241
EIELPV KVD+IISEWMGYFLL+ENML+TVLYAR+KWLVD GIVLPDKASLY+TAIEDA
Sbjct: 143 EIELPVPKVDVIISEWMGYFLLYENMLDTVLYARNKWLVDGGIVLPDKASLYVTAIEDAH 202
Query: 242 YKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASF 301
YKDDK+EFW++VYGFDMSCIK++A+ EPLVDTVD NQIVT+ +LLKTMDISKM GDASF
Sbjct: 203 YKDDKVEFWDDVYGFDMSCIKRRAITEPLVDTVDGNQIVTDSKLLKTMDISKMAAGDASF 262
Query: 302 TAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGPKSRATHWKQTVLYLEDVLTICE 361
TAPFKLVAQRND+IHALVAYFDV+FT CHK MGFSTGPKSRATHWKQTVLYLEDVLTICE
Sbjct: 263 TAPFKLVAQRNDHIHALVAYFDVSFTMCHKKMGFSTGPKSRATHWKQTVLYLEDVLTICE 322
Query: 362 GEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 405
GE I+GS+T+A NKKNPRDVDI L YSL G+H ISR +YKMR
Sbjct: 323 GETITGSMTIAQNKKNPRDVDIKLSYSLNGQHCNISRTHFYKMR 366
|
Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in a glycine and arginine-rich domain (can methylate histones). Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9JIF0|ANM1_MOUSE Protein arginine N-methyltransferase 1 OS=Mus musculus GN=Prmt1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 429 bits (1102), Expect = e-119, Method: Compositional matrix adjust.
Identities = 205/365 (56%), Positives = 270/365 (73%), Gaps = 4/365 (1%)
Query: 45 ASSILDDSVAAPVDGTAIE---DEAMC-DADVSMIDGEDDKTSADYYFDSYSHFGIHEEM 100
A+ I+++ VA +G +++ +E C A+ S +D TS DYYFDSY+HFGIHEEM
Sbjct: 7 ANCIMENFVATLANGMSLQPPLEEVSCGQAESSEKPNAEDMTSKDYYFDSYAHFGIHEEM 66
Query: 101 LKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMA 160
LKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++ A
Sbjct: 67 LKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYA 126
Query: 161 KQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLV 220
+IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVL+ARDKWL
Sbjct: 127 VKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLA 186
Query: 221 DDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIV 280
DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+V
Sbjct: 187 PDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLV 246
Query: 281 TNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGPK 340
TN L+K +DI + D +FT+PF L +RNDY+HALVAYF++ FT+CHK GFST P+
Sbjct: 247 TNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPE 306
Query: 341 SRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQ 400
S THWKQTV Y+ED LT+ GE I G++ + PN KN RD+D + +G+ +S
Sbjct: 307 SPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCST 366
Query: 401 YYKMR 405
Y+MR
Sbjct: 367 DYRMR 371
|
Arginine methyltransferase that methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in proteins such as ESR1, histone H2, H3 and H4, PIAS1, HNRNPA1, HNRNPD, NFATC2IP, SUPT5H, TAF15 and EWS. Constitutes the main enzyme that mediates monomethylation and asymmetric dimethylation of histone H4 'Arg-4' (H4R3me1 and H4R3me2a, respectively), a specific tag for epigenetic transcriptional activation. Together with dimethylated PIAS1, represses STAT1 transcriptional activity, in the late phase of interferon gamma (IFN-gamma) signaling. May be involved in the regulation of TAF15 transcriptional activity, act as an activator of estrogen receptor (ER)-mediated transactivation, play a key role in neurite outgrowth and act as a negative regulator of megakaryocytic differentiation, by modulating p38 MAPK pathway. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|Q99873|ANM1_HUMAN Protein arginine N-methyltransferase 1 OS=Homo sapiens GN=PRMT1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 427 bits (1097), Expect = e-119, Method: Compositional matrix adjust.
Identities = 204/361 (56%), Positives = 267/361 (73%), Gaps = 4/361 (1%)
Query: 49 LDDSVAAPVDGTAIE---DEAMC-DADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDV 104
+++ VA +G +++ +E C A+ S +D TS DYYFDSY+HFGIHEEMLKD
Sbjct: 1 MENFVATLANGMSLQPPLEEVSCGQAESSEKPNAEDMTSKDYYFDSYAHFGIHEEMLKDE 60
Query: 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIV 164
VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++ A +IV
Sbjct: 61 VRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIV 120
Query: 165 EANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGI 224
+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVLYARDKWL DG+
Sbjct: 121 KANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLYARDKWLAPDGL 180
Query: 225 VLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQ 284
+ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+VTN
Sbjct: 181 IFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNAC 240
Query: 285 LLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGPKSRAT 344
L+K +DI + D +FT+PF L +RNDY+HALVAYF++ FT+CHK GFST P+S T
Sbjct: 241 LIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYT 300
Query: 345 HWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKM 404
HWKQTV Y+ED LT+ GE I G++ + PN KN RD+D + +G+ +S Y+M
Sbjct: 301 HWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRM 360
Query: 405 R 405
R
Sbjct: 361 R 361
|
Arginine methyltransferase that methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in proteins such as ESR1, histone H2, H3 and H4, PIAS1, HNRNPA1, HNRNPD, NFATC2IP, SUPT5H, TAF15 and EWS. Constitutes the main enzyme that mediates monomethylation and asymmetric dimethylation of histone H4 'Arg-4' (H4R3me1 and H4R3me2a, respectively), a specific tag for epigenetic transcriptional activation. Together with dimethylated PIAS1, represses STAT1 transcriptional activity, in the late phase of interferon gamma (IFN-gamma) signaling. May be involved in the regulation of TAF15 transcriptional activity, act as an activator of estrogen receptor (ER)-mediated transactivation, play a key role in neurite outgrowth and act as a negative regulator of megakaryocytic differentiation, by modulating p38 MAPK pathway. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|Q28F07|ANM1_XENTR Protein arginine N-methyltransferase 1 OS=Xenopus tropicalis GN=prmt1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 426 bits (1096), Expect = e-118, Method: Compositional matrix adjust.
Identities = 201/349 (57%), Positives = 260/349 (74%), Gaps = 7/349 (2%)
Query: 64 DEAMCDADVSMIDGE-------DDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQ 116
+ + C+ +VS E +D TS DYYFDSY+HFGIHEEMLKD VRT +Y+N ++
Sbjct: 3 EASTCNMEVSCTQPESSVKPNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFH 62
Query: 117 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVL 176
N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++ A +IV+AN +V+T++
Sbjct: 63 NRHLFKDKVVLDVGSGTGILCMFAAKAGAKKVIGIECSSISDYAIKIVKANKLDHVVTII 122
Query: 177 KGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTA 236
KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTV+YARDKWL DG++ PD+A+LY+TA
Sbjct: 123 KGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVIYARDKWLTPDGLIFPDRATLYVTA 182
Query: 237 IEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGP 296
IED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+VTN L+K +DI +
Sbjct: 183 IEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKV 242
Query: 297 GDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGPKSRATHWKQTVLYLEDV 356
D +FT+PF L +RNDYIHALVAYF++ FT+CHK GFST P+S THWKQTV Y+ED
Sbjct: 243 DDLTFTSPFCLQVKRNDYIHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDY 302
Query: 357 LTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 405
LT+ GE I G++++ PN KN RD+D + +G+ +S Y+MR
Sbjct: 303 LTVKTGEEIFGTISMKPNAKNNRDLDFTVDIDFKGQLCELSCSTDYRMR 351
|
Arginine methyltransferase that methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in target proteins. Constitutes the main enzyme that mediates monomethylation and asymmetric dimethylation of histone H4 'Arg-4' (H4R3me1 and H4R3me2a, respectively), a specific tag for epigenetic transcriptional activation. Methylates ilf3 to regulate its DNA-binding activity. Required for neural induction, playing a key role in the control of epidermal versus neural cell fate choice (By similarity). Methylates cirbp to regulate its subcellular location. Acts transiently during metamorphosis as a transcription coactivator, enhancing thyroid hormone (T3) receptor (TR)-mediated transcription by enhancing TR binding to the T3 response element (TRE), and histone modification through recruitment of other coactivators. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|Q5RGQ2|ANM8B_DANRE Protein arginine N-methyltransferase 8-B OS=Danio rerio GN=prmt8b PE=2 SV=2 | Back alignment and function description |
|---|
Score = 425 bits (1093), Expect = e-118, Method: Compositional matrix adjust.
Identities = 197/327 (60%), Positives = 249/327 (76%)
Query: 79 DDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSL 138
++ TS DYYFDSY+HFGIHEEMLKD VRT +Y+N +Y NK +FKDK+VLDVG+GTGILS+
Sbjct: 93 EEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMYHNKHIFKDKIVLDVGSGTGILSM 152
Query: 139 FCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198
F AKAGA HVY +ECS ++ +++I+++N +VIT+LKGK+EE ELPV +VDIIISEWM
Sbjct: 153 FAAKAGAKHVYGIECSSISEYSEKIIKSNHLDSVITILKGKVEETELPVDQVDIIISEWM 212
Query: 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDM 258
GY L +E+MLNTV+YARDKWL G + PD+A+LY+ AIED +YKD KI +W NVYGFDM
Sbjct: 213 GYCLFYESMLNTVIYARDKWLKPGGFMFPDRATLYVVAIEDRQYKDFKIHWWENVYGFDM 272
Query: 259 SCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHAL 318
+CI+ AMMEPLVD VD Q+VTN L+K +DI + D SFT+ F L QRNDY+HAL
Sbjct: 273 TCIRNVAMMEPLVDIVDPKQVVTNSCLVKEVDIYTVKTEDLSFTSAFCLQIQRNDYVHAL 332
Query: 319 VAYFDVTFTKCHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNP 378
V YF++ FTKCHK GFST P + +THWKQTV YLED LT+ GE I GS+TV PN+ N
Sbjct: 333 VTYFNIEFTKCHKKTGFSTAPDAPSTHWKQTVFYLEDYLTVRRGEEILGSITVRPNENNE 392
Query: 379 RDVDIMLKYSLQGRHSAISRIQYYKMR 405
RD+D + +G+ + YKMR
Sbjct: 393 RDLDFTFELDFKGQLCDAAISHDYKMR 419
|
Membrane-associated arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA). Able to mono- and dimethylate ews protein; however its precise role toward ews remains unclear as it still interacts with fully methylated ews. Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8AV13|ANM1A_XENLA Protein arginine N-methyltransferase 1-A OS=Xenopus laevis GN=prmt1-a PE=1 SV=1 | Back alignment and function description |
|---|
Score = 425 bits (1093), Expect = e-118, Method: Compositional matrix adjust.
Identities = 201/346 (58%), Positives = 256/346 (73%)
Query: 60 TAIEDEAMCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKF 119
T IED + + +D TS DYYFDSY+HFGIHEEMLKD VRT +Y+N ++ N+
Sbjct: 24 TPIEDVNSAPPEGGVKTNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRH 83
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 179
LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++ A +IV+AN +V+T++KGK
Sbjct: 84 LFKDKVVLDVGSGTGILCMFAAKAGAKKVIGIECSSISDYAIKIVKANKLDHVVTIIKGK 143
Query: 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIED 239
+EE+ELPV KVDIIISEWMGY L +E+MLNTV+YARDKWL DG++ PD+A+LY+TAIED
Sbjct: 144 VEEVELPVEKVDIIISEWMGYCLFYESMLNTVIYARDKWLTPDGLIFPDRATLYITAIED 203
Query: 240 AEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDA 299
+YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+V+N L+K +DI + D
Sbjct: 204 RQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVSNACLIKEVDIYTVKVDDL 263
Query: 300 SFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGPKSRATHWKQTVLYLEDVLTI 359
SFT+PF L +RNDYIHALVAYF++ FT+CHK GFST P+S THWKQTV Y+ED LT+
Sbjct: 264 SFTSPFCLQVKRNDYIHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTV 323
Query: 360 CEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 405
GE I G++ + PN KN RD+D +G+ +S Y+MR
Sbjct: 324 KTGEEIFGTIGMKPNAKNNRDLDFTFDIDFKGQLCELSCSTDYRMR 369
|
Arginine methyltransferase that methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in target proteins. Constitutes the main enzyme that mediates monomethylation and asymmetric dimethylation of histone H4 'Arg-4' (H4R3me1 and H4R3me2a, respectively), a specific tag for epigenetic transcriptional activation. Methylates ilf3 to regulate its DNA-binding activity. Required for neural induction, playing a key role in the control of epidermal versus neural cell fate choice. Methylates cirbp to regulate its subcellular location. Acts transiently during metamorphosis as a transcription coactivator, enhancing thyroid hormone (T3) receptor (TR)-mediated transcription by enhancing TR binding to the T3 response element (TRE), and histone modification through recruitment of other coactivators. Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|Q63009|ANM1_RAT Protein arginine N-methyltransferase 1 OS=Rattus norvegicus GN=Prmt1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust.
Identities = 201/353 (56%), Positives = 260/353 (73%)
Query: 53 VAAPVDGTAIEDEAMCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQN 112
+AA I + + A+ S +D TS DYYFDSY+HFGIHEEMLKD VRT +Y+N
Sbjct: 1 MAAAEAANCIMEVSCGQAESSEKPNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRN 60
Query: 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNV 172
++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++ A +IV+AN +V
Sbjct: 61 SMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHV 120
Query: 173 ITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASL 232
+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVL+ARDKWL DG++ PD+A+L
Sbjct: 121 VTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATL 180
Query: 233 YLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDIS 292
Y+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+VTN L+K +DI
Sbjct: 181 YVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIY 240
Query: 293 KMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGPKSRATHWKQTVLY 352
+ D +FT+PF L +RNDY+HALVAYF++ FT+CHK GFST P+S THWKQTV Y
Sbjct: 241 TVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFY 300
Query: 353 LEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 405
+ED LT+ GE I G++ + PN KN RD+D + +G+ +S Y+MR
Sbjct: 301 MEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRMR 353
|
Arginine methyltransferase that methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in proteins such as ESR1, histone H2, H3 and H4, PIAS1, HNRNPA1, HNRNPD, NFATC2IP, SUPT5H, TAF15 and EWS. Constitutes the main enzyme that mediates monomethylation and asymmetric dimethylation of histone H4 'Arg-4' (H4R3me1 and H4R3me2a, respectively), a specific tag for epigenetic transcriptional activation. Together with dimethylated PIAS1, represses STAT1 transcriptional activity, in the late phase of interferon gamma (IFN-gamma) signaling. May be involved in the regulation of TAF15 transcriptional activity, act as an activator of estrogen receptor (ER)-mediated transactivation, play a key role in neurite outgrowth and act as a negative regulator of megakaryocytic differentiation, by modulating p38 MAPK pathway. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 405 | ||||||
| 255546199 | 387 | protein arginine n-methyltransferase 1, | 0.953 | 0.997 | 0.795 | 0.0 | |
| 118487693 | 384 | unknown [Populus trichocarpa] | 0.938 | 0.989 | 0.825 | 0.0 | |
| 224122474 | 377 | arginine methyltransferease [Populus tri | 0.916 | 0.984 | 0.831 | 0.0 | |
| 363806956 | 376 | uncharacterized protein LOC100795951 [Gl | 0.928 | 1.0 | 0.775 | 0.0 | |
| 356520854 | 379 | PREDICTED: probable protein arginine N-m | 0.935 | 1.0 | 0.780 | 0.0 | |
| 255647533 | 379 | unknown [Glycine max] | 0.935 | 1.0 | 0.780 | 0.0 | |
| 225444983 | 406 | PREDICTED: protein arginine N-methyltran | 0.930 | 0.928 | 0.785 | 1e-178 | |
| 15233606 | 390 | protein arginine N-methyltransferase 1 [ | 0.913 | 0.948 | 0.794 | 1e-176 | |
| 17381028 | 390 | putative arginine methyltransferase pam1 | 0.913 | 0.948 | 0.791 | 1e-175 | |
| 190683457 | 385 | putative protein arginine N-methyltransf | 0.950 | 1.0 | 0.740 | 1e-175 |
| >gi|255546199|ref|XP_002514159.1| protein arginine n-methyltransferase 1, putative [Ricinus communis] gi|223546615|gb|EEF48113.1| protein arginine n-methyltransferase 1, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/406 (79%), Positives = 357/406 (87%), Gaps = 20/406 (4%)
Query: 1 MGRRKNNKSSDNNESSTKVSDSNPDRQQHNTITRFADAEEDDATASSILDDSVAAPVD-G 59
M R KNN++S STK+ RF DA+ED T SS L +S D G
Sbjct: 1 MSRSKNNEAS--MSQSTKI--------------RFEDADEDLTTESSYLGESTVVGDDKG 44
Query: 60 TAIEDEAMCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKF 119
AI+DE+M +ADVS ID DKTSADYYFDSYSHFGIHEEMLKDVVRTK+YQNVIYQNKF
Sbjct: 45 IAIDDESMGEADVSCID---DKTSADYYFDSYSHFGIHEEMLKDVVRTKTYQNVIYQNKF 101
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 179
LFK+KVVLDVGAGTGILSLFCAKAGAAHVYAVECS MA+MAK+IVE+NGFSNV+TVLKGK
Sbjct: 102 LFKNKVVLDVGAGTGILSLFCAKAGAAHVYAVECSAMADMAKEIVESNGFSNVVTVLKGK 161
Query: 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIED 239
+EE+ELPV KVDIIISEWMGYFLL+ENMLNTVLYARDKWLV+DGI+LPDKASL+LTAIED
Sbjct: 162 VEELELPVAKVDIIISEWMGYFLLYENMLNTVLYARDKWLVNDGILLPDKASLFLTAIED 221
Query: 240 AEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDA 299
AEYK+DKIEFWN VYGFDMSCIKKQAMMEPLVDTVDQNQ+VTNCQLLKTMDISKM GDA
Sbjct: 222 AEYKEDKIEFWNRVYGFDMSCIKKQAMMEPLVDTVDQNQVVTNCQLLKTMDISKMASGDA 281
Query: 300 SFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGPKSRATHWKQTVLYLEDVLTI 359
SFT PFKLVA+R+DYIHALVAYFDV+FT+CHKLMGFSTGP+SRATHWKQTVLYLEDVLTI
Sbjct: 282 SFTVPFKLVAERDDYIHALVAYFDVSFTRCHKLMGFSTGPRSRATHWKQTVLYLEDVLTI 341
Query: 360 CEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 405
CEGEAI+GS+TVAPNKKNPRD+DIM+KY+L GR A++R QYYKMR
Sbjct: 342 CEGEAITGSMTVAPNKKNPRDIDIMVKYALNGRRCAVTRTQYYKMR 387
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118487693|gb|ABK95671.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/384 (82%), Positives = 341/384 (88%), Gaps = 4/384 (1%)
Query: 23 NPDRQQHNTITRFADAEEDDATASSILDDSVAAPVDGTAIEDEAMCDADVSMIDG-EDDK 81
N R Q I RF D EE SS LDDS+ A AI+D AM D DVS +DG +DDK
Sbjct: 4 NNTRHQATKI-RFNDEEE--EEESSNLDDSIVATEKSIAIDDVAMQDPDVSFVDGCDDDK 60
Query: 82 TSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCA 141
TSADYYFDSYSHFGIHEEMLKDVVRTK+YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCA
Sbjct: 61 TSADYYFDSYSHFGIHEEMLKDVVRTKTYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCA 120
Query: 142 KAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201
KAGAAHVYAVECS MANMAK+IVE+NG+SNVITVLKGKIEEIELPV KVDIIISEWMGYF
Sbjct: 121 KAGAAHVYAVECSHMANMAKEIVESNGYSNVITVLKGKIEEIELPVAKVDIIISEWMGYF 180
Query: 202 LLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCI 261
LLFENMLN+VLY RDKWLV+DGIVLPD+ SLYLTAIEDAEYK+DKIEFWNNVYGFDM+CI
Sbjct: 181 LLFENMLNSVLYTRDKWLVNDGIVLPDQTSLYLTAIEDAEYKEDKIEFWNNVYGFDMTCI 240
Query: 262 KKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAY 321
KKQAM EPLVDTVDQNQIVTNCQ LKTMDISKM GD SFTAPFKLVA+R+D+IHALVAY
Sbjct: 241 KKQAMGEPLVDTVDQNQIVTNCQKLKTMDISKMVSGDTSFTAPFKLVAERDDFIHALVAY 300
Query: 322 FDVTFTKCHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDV 381
FDV+FTKCHK GFSTGP+SRATHWKQTVLYLEDVLTIC+GEA+SGS+TVAPNKKNPRD+
Sbjct: 301 FDVSFTKCHKFTGFSTGPRSRATHWKQTVLYLEDVLTICQGEALSGSMTVAPNKKNPRDI 360
Query: 382 DIMLKYSLQGRHSAISRIQYYKMR 405
DIM+KYSL GR SR Q+YKMR
Sbjct: 361 DIMIKYSLNGRRCVASRTQHYKMR 384
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224122474|ref|XP_002330490.1| arginine methyltransferease [Populus trichocarpa] gi|222872424|gb|EEF09555.1| arginine methyltransferease [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/374 (83%), Positives = 338/374 (90%), Gaps = 3/374 (0%)
Query: 33 TRFADAEEDDATASSILDDSVAAPVDGTAIEDEAMCDADVSMIDG-EDDKTSADYYFDSY 91
TR +E++ SS LDDS+ A AI+D AM D DVS +DG +DDKTSADYYFDSY
Sbjct: 6 TRHQATKEEEE--SSNLDDSIVATEKSIAIDDVAMQDPDVSFVDGCDDDKTSADYYFDSY 63
Query: 92 SHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAV 151
SHFGIHEEMLKDVVRTK+YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAV
Sbjct: 64 SHFGIHEEMLKDVVRTKTYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAV 123
Query: 152 ECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTV 211
ECS MANMAK+IVE+NG+SNVITVLKGKIEEIELPV KVDIIISEWMGYFLLFENMLN+V
Sbjct: 124 ECSHMANMAKEIVESNGYSNVITVLKGKIEEIELPVAKVDIIISEWMGYFLLFENMLNSV 183
Query: 212 LYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLV 271
LY RDKWLV+DGIVLPD+ SLYLTAIEDAEYK+DKIEFWNNVYGFDM+CIKKQAM EPLV
Sbjct: 184 LYTRDKWLVNDGIVLPDQTSLYLTAIEDAEYKEDKIEFWNNVYGFDMTCIKKQAMGEPLV 243
Query: 272 DTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHK 331
DTVDQNQIVTNCQ LKTMDISKM GD SFTAPFKLVA+R+D+IHALVAYFDV+FTKCHK
Sbjct: 244 DTVDQNQIVTNCQKLKTMDISKMVSGDTSFTAPFKLVAERDDFIHALVAYFDVSFTKCHK 303
Query: 332 LMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQG 391
GFSTGP+SRATHWKQTVLYLEDVLTIC+GEA+SGS+TVAPNKKNPRD+DIM+KYSL G
Sbjct: 304 FTGFSTGPRSRATHWKQTVLYLEDVLTICQGEALSGSMTVAPNKKNPRDIDIMIKYSLNG 363
Query: 392 RHSAISRIQYYKMR 405
R SR Q+YKMR
Sbjct: 364 RRCVASRTQHYKMR 377
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|363806956|ref|NP_001242055.1| uncharacterized protein LOC100795951 [Glycine max] gi|255639209|gb|ACU19903.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/405 (77%), Positives = 343/405 (84%), Gaps = 29/405 (7%)
Query: 1 MGRRKNNKSSDNNESSTKVSDSNPDRQQHNTITRFADAEEDDATASSILDDSVAAPVDGT 60
MG+RKN DNN + S S D +N RF +A VD +
Sbjct: 1 MGQRKN----DNN--INQCSSSKEDADMNNNHLRFEEA------------------VDES 36
Query: 61 AIEDEAMCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFL 120
+ D++MCD I+ DDKTSADYYFDSYSHFGIHEEMLKD VRTK+YQNVIYQN+FL
Sbjct: 37 SNLDQSMCD-----IEESDDKTSADYYFDSYSHFGIHEEMLKDTVRTKTYQNVIYQNRFL 91
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKI 180
FK+KVVLDVGAGTGILSLFCAKAGA HVYAVECS MA+MAK+IVEANG+SNV+TVLKGKI
Sbjct: 92 FKNKVVLDVGAGTGILSLFCAKAGAEHVYAVECSHMADMAKEIVEANGYSNVVTVLKGKI 151
Query: 181 EEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDA 240
EEIELPV KVDIIISEWMGYFLLFENMLN+VLYARDKWLVD G+VLPDKASL+LTAIED
Sbjct: 152 EEIELPVAKVDIIISEWMGYFLLFENMLNSVLYARDKWLVDGGVVLPDKASLHLTAIEDT 211
Query: 241 EYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDAS 300
+YK+DKIEFWNNVYGFDMSCIKKQA+MEPLVDTVDQNQI TNCQLLKTMDISKM PGDAS
Sbjct: 212 DYKEDKIEFWNNVYGFDMSCIKKQAIMEPLVDTVDQNQIATNCQLLKTMDISKMAPGDAS 271
Query: 301 FTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGPKSRATHWKQTVLYLEDVLTIC 360
FT PFKLVA+R+DYIHALVAYFDV+FTKCHKLMGFSTGP+SRATHWKQTVLYLEDVLTIC
Sbjct: 272 FTVPFKLVAERDDYIHALVAYFDVSFTKCHKLMGFSTGPRSRATHWKQTVLYLEDVLTIC 331
Query: 361 EGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 405
EGEAI GS+ VAPNKKNPRDVDIMLKYSL GR +SR+QYYKMR
Sbjct: 332 EGEAIVGSMAVAPNKKNPRDVDIMLKYSLNGRRCNVSRVQYYKMR 376
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356520854|ref|XP_003529075.1| PREDICTED: probable protein arginine N-methyltransferase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/405 (78%), Positives = 349/405 (86%), Gaps = 26/405 (6%)
Query: 1 MGRRKNNKSSDNNESSTKVSDSNPDRQQHNTITRFADAEEDDATASSILDDSVAAPVDGT 60
MGRRKNN +++ SS + +D N + RF +A+E VD +
Sbjct: 1 MGRRKNNSNNNQCSSSKEDADMNSNH------LRFEEADE---------------AVDES 39
Query: 61 AIEDEAMCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFL 120
+ D++MCD I+ DDKTSADYYFDSYSHFGIHEEMLKD VRTK+YQNVIYQNKFL
Sbjct: 40 SNLDQSMCD-----IEESDDKTSADYYFDSYSHFGIHEEMLKDSVRTKTYQNVIYQNKFL 94
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKI 180
FK+KVVLDVGAGTGILSLFCAKAGA HVYAVECS MA+MAK+IVEANG+SNV+TVLKGKI
Sbjct: 95 FKNKVVLDVGAGTGILSLFCAKAGAEHVYAVECSHMADMAKEIVEANGYSNVVTVLKGKI 154
Query: 181 EEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDA 240
EEIELPV KVDIIISEWMGYFLLFENMLN+VLYARDKWLVD G+VLPDKASL+LTAIEDA
Sbjct: 155 EEIELPVAKVDIIISEWMGYFLLFENMLNSVLYARDKWLVDGGVVLPDKASLHLTAIEDA 214
Query: 241 EYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDAS 300
+YK+DKIEFWNNVYGFDMSCIKKQA+MEPLVDTVDQNQI TNCQLLKTMDISKM PGDAS
Sbjct: 215 DYKEDKIEFWNNVYGFDMSCIKKQAIMEPLVDTVDQNQIATNCQLLKTMDISKMAPGDAS 274
Query: 301 FTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGPKSRATHWKQTVLYLEDVLTIC 360
F APFKLVA+R+DYIHALVAYFDV+FTKCHKLMGFSTGP+SRATHWKQTVLYLEDVLT+C
Sbjct: 275 FAAPFKLVAERDDYIHALVAYFDVSFTKCHKLMGFSTGPRSRATHWKQTVLYLEDVLTVC 334
Query: 361 EGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 405
EGEAI GS+TVAPNKKNPRDVDIMLKYSL GR +SR+QYYKMR
Sbjct: 335 EGEAIVGSMTVAPNKKNPRDVDIMLKYSLNGRRCNVSRVQYYKMR 379
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255647533|gb|ACU24230.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/405 (78%), Positives = 348/405 (85%), Gaps = 26/405 (6%)
Query: 1 MGRRKNNKSSDNNESSTKVSDSNPDRQQHNTITRFADAEEDDATASSILDDSVAAPVDGT 60
MGRRKNN +++ SS + +D N + RF +A+E VD +
Sbjct: 1 MGRRKNNSNNNQCSSSKEDTDMNSNH------LRFEEADE---------------AVDES 39
Query: 61 AIEDEAMCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFL 120
+ D++MCD I+ DDKTSADYYFDSYSHFGIHEEMLKD VRTK+YQNVIYQNKFL
Sbjct: 40 SNLDQSMCD-----IEESDDKTSADYYFDSYSHFGIHEEMLKDSVRTKTYQNVIYQNKFL 94
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKI 180
FK+KVVLDVGAGTGILSLFCAKAGA HVYAVECS MA+MAK+IVEANG+SNV+TVLKGKI
Sbjct: 95 FKNKVVLDVGAGTGILSLFCAKAGAEHVYAVECSHMADMAKEIVEANGYSNVVTVLKGKI 154
Query: 181 EEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDA 240
EEIELPV KVDIIISEWMGYFLLFENMLN+VLYARDKWLVD G+VLPDKASL+LTAIEDA
Sbjct: 155 EEIELPVAKVDIIISEWMGYFLLFENMLNSVLYARDKWLVDGGVVLPDKASLHLTAIEDA 214
Query: 241 EYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDAS 300
+YK+DKIEFWNNVYGFDMSCIKKQA+MEPLVDTVDQNQI TNCQLLKTMDISKM PGDAS
Sbjct: 215 DYKEDKIEFWNNVYGFDMSCIKKQAIMEPLVDTVDQNQIATNCQLLKTMDISKMAPGDAS 274
Query: 301 FTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGPKSRATHWKQTVLYLEDVLTIC 360
F APFKLVA+R+DYIHALVAYFDV+FTKCHKLMGFSTGP+SRATHWKQTVLYLEDVLT+C
Sbjct: 275 FAAPFKLVAERDDYIHALVAYFDVSFTKCHKLMGFSTGPRSRATHWKQTVLYLEDVLTVC 334
Query: 361 EGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 405
EGEAI GS TVAPNKKNPRDVDIMLKYSL GR +SR+QYYKMR
Sbjct: 335 EGEAIVGSTTVAPNKKNPRDVDIMLKYSLNGRRCNVSRVQYYKMR 379
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225444983|ref|XP_002282760.1| PREDICTED: protein arginine N-methyltransferase 1.1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust.
Identities = 308/392 (78%), Positives = 338/392 (86%), Gaps = 15/392 (3%)
Query: 29 HNTITRFADAEEDDATASSILDDSVAAPVDGTAIEDEA----MC-----DADVSMIDGED 79
T TRF D + ++AT SS L+D + + T +D+A MC D D++ D
Sbjct: 15 QGTHTRFEDEQIEEATESSNLEDPMCDADESTIGQDKAIDDTMCEPGESDKDIARSFELD 74
Query: 80 D------KTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGT 133
D KTSADYYFDSYSHFGIHEEMLKDVVRTK+YQNVIY+NKFLFK+KVVLDVGAGT
Sbjct: 75 DSVIGSDKTSADYYFDSYSHFGIHEEMLKDVVRTKTYQNVIYKNKFLFKNKVVLDVGAGT 134
Query: 134 GILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193
GILSLFCAKAGA HVYAVECS MA+MAK+IVE NGFS+VITV+KGK+EEI LPV +VDII
Sbjct: 135 GILSLFCAKAGAKHVYAVECSHMADMAKEIVEVNGFSDVITVMKGKVEEIVLPVAQVDII 194
Query: 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNV 253
ISEWMGYFLLFENMLNTVLYARDKWLV+DGIVLPDKASLYLTAIEDAEYK+DKIEFWN+V
Sbjct: 195 ISEWMGYFLLFENMLNTVLYARDKWLVNDGIVLPDKASLYLTAIEDAEYKEDKIEFWNSV 254
Query: 254 YGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRND 313
YGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKM PGDASFTAPFKLVA R+D
Sbjct: 255 YGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMAPGDASFTAPFKLVASRDD 314
Query: 314 YIHALVAYFDVTFTKCHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAP 373
YIHALVAYFDV+FTKCHKL GFSTGP+SRATHWKQTVLYLEDVLTICEGE + GS+TVA
Sbjct: 315 YIHALVAYFDVSFTKCHKLTGFSTGPRSRATHWKQTVLYLEDVLTICEGETVVGSMTVAQ 374
Query: 374 NKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 405
NKKNPRDVDIM+KYS G+ +SR QYYKMR
Sbjct: 375 NKKNPRDVDIMIKYSFNGQRCQVSRTQYYKMR 406
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15233606|ref|NP_194680.1| protein arginine N-methyltransferase 1 [Arabidopsis thaliana] gi|75208030|sp|Q9SU94.1|ANM11_ARATH RecName: Full=Protein arginine N-methyltransferase 1.1; Short=AtPRMT11; AltName: Full=Arginine methyltransferase pam1; AltName: Full=Histone-arginine N-methyltransferase PRMT11 gi|5123545|emb|CAB45311.1| arginine methyltransferase (pam1) [Arabidopsis thaliana] gi|7269850|emb|CAB79709.1| arginine methyltransferase (pam1) [Arabidopsis thaliana] gi|21593404|gb|AAM65371.1| arginine methyltransferase pam1 [Arabidopsis thaliana] gi|23297369|gb|AAN12952.1| arginine methyltransferase pam1 [Arabidopsis thaliana] gi|332660238|gb|AEE85638.1| protein arginine N-methyltransferase 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 624 bits (1609), Expect = e-176, Method: Compositional matrix adjust.
Identities = 301/379 (79%), Positives = 333/379 (87%), Gaps = 9/379 (2%)
Query: 29 HNTITRFADAEEDDATASSILDDSVAAPVDGTAIEDEAMCDADVSMIDGE--DDKTSADY 86
NT RF DA+ED+ S VA +DE+M DA S E DD TSADY
Sbjct: 19 QNTKIRFEDADEDEVAEGS----GVAGE---ETPQDESMFDAGESADTAEVTDDTTSADY 71
Query: 87 YFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAA 146
YFDSYSHFGIHEEMLKDVVRTK+YQNVIYQNKFL KDK+VLDVGAGTGILSLFCAKAGAA
Sbjct: 72 YFDSYSHFGIHEEMLKDVVRTKTYQNVIYQNKFLIKDKIVLDVGAGTGILSLFCAKAGAA 131
Query: 147 HVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFEN 206
HVYAVECSQMA+MAK+IV+ANGFS+VITVLKGKIEEIELP KVD+IISEWMGYFLLFEN
Sbjct: 132 HVYAVECSQMADMAKEIVKANGFSDVITVLKGKIEEIELPTPKVDVIISEWMGYFLLFEN 191
Query: 207 MLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAM 266
ML++VLYARDKWLV+ G+VLPDKASL+LTAIED+EYK+DKIEFWN+VYGFDMSCIKK+AM
Sbjct: 192 MLDSVLYARDKWLVEGGVVLPDKASLHLTAIEDSEYKEDKIEFWNSVYGFDMSCIKKKAM 251
Query: 267 MEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTF 326
MEPLVDTVDQNQIVT+ +LLKTMDISKM GDASFTAPFKLVAQRNDYIHALVAYFDV+F
Sbjct: 252 MEPLVDTVDQNQIVTDSRLLKTMDISKMSSGDASFTAPFKLVAQRNDYIHALVAYFDVSF 311
Query: 327 TKCHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLK 386
T CHKL+GFSTGPKSRATHWKQTVLYLEDVLTICEGE I+G+++V+PNKKNPRD+DI L
Sbjct: 312 TMCHKLLGFSTGPKSRATHWKQTVLYLEDVLTICEGETITGTMSVSPNKKNPRDIDIKLS 371
Query: 387 YSLQGRHSAISRIQYYKMR 405
YSL G+H ISR Q+YKMR
Sbjct: 372 YSLNGQHCKISRTQHYKMR 390
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|17381028|gb|AAL36326.1| putative arginine methyltransferase pam1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust.
Identities = 300/379 (79%), Positives = 332/379 (87%), Gaps = 9/379 (2%)
Query: 29 HNTITRFADAEEDDATASSILDDSVAAPVDGTAIEDEAMCDADVSMIDGE--DDKTSADY 86
NT RF DA+ED+ S VA +DE+M DA S E DD TSADY
Sbjct: 19 QNTKIRFEDADEDEVAEGS----GVAGE---ETPQDESMFDAGESADTAEVTDDTTSADY 71
Query: 87 YFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAA 146
YFDSYSHFGIHEEMLKDVVRTK+YQNVIYQNKFL KDK+VLDVGAGTGILSLFCAKAGAA
Sbjct: 72 YFDSYSHFGIHEEMLKDVVRTKTYQNVIYQNKFLIKDKIVLDVGAGTGILSLFCAKAGAA 131
Query: 147 HVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFEN 206
HVYAVECSQMA+MAK+IV+ANGFS+VITVLKGKIEEIELP KVD+IISEWMGYFLLFEN
Sbjct: 132 HVYAVECSQMADMAKEIVKANGFSDVITVLKGKIEEIELPTPKVDVIISEWMGYFLLFEN 191
Query: 207 MLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAM 266
ML++VLYARDKWLV+ G+VLPDKASL+LTAIED+EYK+DKIEFWN+VYGFDMSCIKK+AM
Sbjct: 192 MLDSVLYARDKWLVEGGVVLPDKASLHLTAIEDSEYKEDKIEFWNSVYGFDMSCIKKKAM 251
Query: 267 MEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTF 326
MEPLVDTV QNQIVT+ +LLKTMDISKM GDASFTAPFKLVAQRNDYIHALVAYFDV+F
Sbjct: 252 MEPLVDTVGQNQIVTDSRLLKTMDISKMSSGDASFTAPFKLVAQRNDYIHALVAYFDVSF 311
Query: 327 TKCHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLK 386
T CHKL+GFSTGPKSRATHWKQTVLYLEDVLTICEGE I+G+++V+PNKKNPRD+DI L
Sbjct: 312 TMCHKLLGFSTGPKSRATHWKQTVLYLEDVLTICEGETITGTMSVSPNKKNPRDIDIKLS 371
Query: 387 YSLQGRHSAISRIQYYKMR 405
YSL G+H ISR Q+YKMR
Sbjct: 372 YSLNGQHCKISRTQHYKMR 390
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|190683457|gb|ACE82047.1| putative protein arginine N-methyltransferase 1 [Musa acuminata AAA Group] | Back alignment and taxonomy information |
|---|
Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust.
Identities = 300/405 (74%), Positives = 335/405 (82%), Gaps = 20/405 (4%)
Query: 1 MGRRKNNKSSDNNESSTKVSDSNPDRQQHNTITRFADAEEDDATASSILDDSVAAPVDGT 60
MGRRK N + S PD N D + A ++ ++ + +
Sbjct: 1 MGRRKGG----NKALAPSGQKSTPDADGMNL-----DGGKGQEEAPEVV--AIEEKAESS 49
Query: 61 AIEDEAMCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFL 120
+ED + +D KTSADYYFDSYSHFGIHEEMLKDVVRTK+YQNVIYQN FL
Sbjct: 50 NLEDSPLIGSD---------KTSADYYFDSYSHFGIHEEMLKDVVRTKTYQNVIYQNSFL 100
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKI 180
FK+KVVLDVGAGTGILSLFCAKAGA HVYAVECS MA+MAK+IV+ NG+SNVITVLKGK+
Sbjct: 101 FKNKVVLDVGAGTGILSLFCAKAGAKHVYAVECSLMADMAKEIVQTNGYSNVITVLKGKV 160
Query: 181 EEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDA 240
EEIELPV VD+IISEWMGYFLLFENMLNTVLYARDKWL ++GIVLPDKASLYLTAIEDA
Sbjct: 161 EEIELPVAHVDVIISEWMGYFLLFENMLNTVLYARDKWLNNNGIVLPDKASLYLTAIEDA 220
Query: 241 EYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDAS 300
EYK+DKIEFWNNVYGFDMSCI+KQAM+EPLVDTVDQNQIVTNCQLLKTMDISKM PGD S
Sbjct: 221 EYKEDKIEFWNNVYGFDMSCIEKQAMIEPLVDTVDQNQIVTNCQLLKTMDISKMAPGDVS 280
Query: 301 FTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGPKSRATHWKQTVLYLEDVLTIC 360
F APFKLVA+RNDYIHALVAYFDV+FTKCHKL+GFSTGP+S+ATHWKQTVLYLEDVLTIC
Sbjct: 281 FMAPFKLVAERNDYIHALVAYFDVSFTKCHKLVGFSTGPRSKATHWKQTVLYLEDVLTIC 340
Query: 361 EGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 405
EGEA+ GSLTV PN++NPRDVDIMLKYSL G+H +SR Q+YKMR
Sbjct: 341 EGEAVVGSLTVEPNERNPRDVDIMLKYSLNGQHCQVSRTQHYKMR 385
|
Source: Musa acuminata AAA Group Species: Musa acuminata Genus: Musa Family: Musaceae Order: Zingiberales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 405 | ||||||
| TAIR|locus:2134328 | 390 | PRMT11 "arginine methyltransfe | 0.846 | 0.879 | 0.840 | 4.3e-157 | |
| TAIR|locus:2051995 | 366 | PRMT1A "protein arginine methy | 0.844 | 0.934 | 0.827 | 5.8e-153 | |
| UNIPROTKB|F6XFY9 | 371 | PRMT1 "Uncharacterized protein | 0.891 | 0.973 | 0.564 | 2.9e-110 | |
| UNIPROTKB|H7C2I1 | 371 | PRMT1 "Protein arginine N-meth | 0.891 | 0.973 | 0.564 | 2.9e-110 | |
| MGI|MGI:107846 | 371 | Prmt1 "protein arginine N-meth | 0.891 | 0.973 | 0.561 | 1e-109 | |
| UNIPROTKB|Q99873 | 361 | PRMT1 "Protein arginine N-meth | 0.881 | 0.988 | 0.565 | 2.1e-109 | |
| UNIPROTKB|E2R6B6 | 374 | PRMT1 "Uncharacterized protein | 0.891 | 0.965 | 0.559 | 7e-109 | |
| UNIPROTKB|Q5E949 | 353 | HRMT1L2 "HMT1 hnRNP methyltran | 0.841 | 0.966 | 0.587 | 1.5e-108 | |
| UNIPROTKB|Q28F07 | 351 | prmt1 "Protein arginine N-meth | 0.841 | 0.971 | 0.584 | 1.9e-108 | |
| UNIPROTKB|Q8AV13 | 369 | prmt1-a "Protein arginine N-me | 0.854 | 0.937 | 0.580 | 1.9e-108 |
| TAIR|locus:2134328 PRMT11 "arginine methyltransferase 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1531 (544.0 bits), Expect = 4.3e-157, P = 4.3e-157
Identities = 290/345 (84%), Positives = 320/345 (92%)
Query: 63 EDEAMCDADVSMIDGE--DDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFL 120
+DE+M DA S E DD TSADYYFDSYSHFGIHEEMLKDVVRTK+YQNVIYQNKFL
Sbjct: 46 QDESMFDAGESADTAEVTDDTTSADYYFDSYSHFGIHEEMLKDVVRTKTYQNVIYQNKFL 105
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKI 180
KDK+VLDVGAGTGILSLFCAKAGAAHVYAVECSQMA+MAK+IV+ANGFS+VITVLKGKI
Sbjct: 106 IKDKIVLDVGAGTGILSLFCAKAGAAHVYAVECSQMADMAKEIVKANGFSDVITVLKGKI 165
Query: 181 EEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDA 240
EEIELP KVD+IISEWMGYFLLFENML++VLYARDKWLV+ G+VLPDKASL+LTAIED+
Sbjct: 166 EEIELPTPKVDVIISEWMGYFLLFENMLDSVLYARDKWLVEGGVVLPDKASLHLTAIEDS 225
Query: 241 EYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDAS 300
EYK+DKIEFWN+VYGFDMSCIKK+AMMEPLVDTVDQNQIVT+ +LLKTMDISKM GDAS
Sbjct: 226 EYKEDKIEFWNSVYGFDMSCIKKKAMMEPLVDTVDQNQIVTDSRLLKTMDISKMSSGDAS 285
Query: 301 FTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGPKSRATHWKQTVLYLEDVLTIC 360
FTAPFKLVAQRNDYIHALVAYFDV+FT CHKL+GFSTGPKSRATHWKQTVLYLEDVLTIC
Sbjct: 286 FTAPFKLVAQRNDYIHALVAYFDVSFTMCHKLLGFSTGPKSRATHWKQTVLYLEDVLTIC 345
Query: 361 EGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 405
EGE I+G+++V+PNKKNPRD+DI L YSL G+H ISR Q+YKMR
Sbjct: 346 EGETITGTMSVSPNKKNPRDIDIKLSYSLNGQHCKISRTQHYKMR 390
|
|
| TAIR|locus:2051995 PRMT1A "protein arginine methyltransferase 1A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1492 (530.3 bits), Expect = 5.8e-153, P = 5.8e-153
Identities = 283/342 (82%), Positives = 313/342 (91%)
Query: 64 DEAMCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKD 123
DE+M D D + D DD TSADYYFDSYSHFGIHEEMLKDVVRTKSYQ+VIY+NKFL KD
Sbjct: 25 DESMHDGDDNNADVADDITSADYYFDSYSHFGIHEEMLKDVVRTKSYQDVIYKNKFLIKD 84
Query: 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEI 183
K+VLDVGAGTGILSLFCAKAGAAHVYAVECSQMA+ AK+IV++NGFS+VITVLKGKIEEI
Sbjct: 85 KIVLDVGAGTGILSLFCAKAGAAHVYAVECSQMADTAKEIVKSNGFSDVITVLKGKIEEI 144
Query: 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYK 243
ELPV KVD+IISEWMGYFLL+ENML+TVLYAR+KWLVD GIVLPDKASLY+TAIEDA YK
Sbjct: 145 ELPVPKVDVIISEWMGYFLLYENMLDTVLYARNKWLVDGGIVLPDKASLYVTAIEDAHYK 204
Query: 244 DDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTA 303
DDK+EFW++VYGFDMSCIK++A+ EPLVDTVD NQIVT+ +LLKTMDISKM GDASFTA
Sbjct: 205 DDKVEFWDDVYGFDMSCIKRRAITEPLVDTVDGNQIVTDSKLLKTMDISKMAAGDASFTA 264
Query: 304 PFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGE 363
PFKLVAQRND+IHALVAYFDV+FT CHK MGFSTGPKSRATHWKQTVLYLEDVLTICEGE
Sbjct: 265 PFKLVAQRNDHIHALVAYFDVSFTMCHKKMGFSTGPKSRATHWKQTVLYLEDVLTICEGE 324
Query: 364 AISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 405
I+GS+T+A NKKNPRDVDI L YSL G+H ISR +YKMR
Sbjct: 325 TITGSMTIAQNKKNPRDVDIKLSYSLNGQHCNISRTHFYKMR 366
|
|
| UNIPROTKB|F6XFY9 PRMT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1089 (388.4 bits), Expect = 2.9e-110, P = 2.9e-110
Identities = 206/365 (56%), Positives = 270/365 (73%)
Query: 45 ASSILDDSVAAPVDGTAIE---DEAMC-DADVSMIDGEDDKTSADYYFDSYSHFGIHEEM 100
A+ I+++ VA +G +++ +E C A+ S +D TS DYYFDSY+HFGIHEEM
Sbjct: 7 ANCIMENFVATLANGMSLQPPLEEVSCGQAESSEKPNAEDMTSKDYYFDSYAHFGIHEEM 66
Query: 101 LKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMA 160
LKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++ A
Sbjct: 67 LKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYA 126
Query: 161 KQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLV 220
+IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVLYARDKWL
Sbjct: 127 VKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLYARDKWLA 186
Query: 221 DDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIV 280
DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+V
Sbjct: 187 PDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLV 246
Query: 281 TNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGPK 340
TN L+K +DI + D +FT+PF L +RNDY+HALVAYF++ FT+CHK GFST P+
Sbjct: 247 TNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPE 306
Query: 341 SRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQ 400
S THWKQTV Y+ED LT+ GE I G++ + PN KN RD+D + +G+ +S
Sbjct: 307 SPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCST 366
Query: 401 YYKMR 405
Y+MR
Sbjct: 367 DYRMR 371
|
|
| UNIPROTKB|H7C2I1 PRMT1 "Protein arginine N-methyltransferase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1089 (388.4 bits), Expect = 2.9e-110, P = 2.9e-110
Identities = 206/365 (56%), Positives = 270/365 (73%)
Query: 45 ASSILDDSVAAPVDGTAIE---DEAMC-DADVSMIDGEDDKTSADYYFDSYSHFGIHEEM 100
A+ I+++ VA +G +++ +E C A+ S +D TS DYYFDSY+HFGIHEEM
Sbjct: 7 ANCIMENFVATLANGMSLQPPLEEVSCGQAESSEKPNAEDMTSKDYYFDSYAHFGIHEEM 66
Query: 101 LKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMA 160
LKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++ A
Sbjct: 67 LKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYA 126
Query: 161 KQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLV 220
+IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVLYARDKWL
Sbjct: 127 VKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLYARDKWLA 186
Query: 221 DDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIV 280
DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+V
Sbjct: 187 PDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLV 246
Query: 281 TNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGPK 340
TN L+K +DI + D +FT+PF L +RNDY+HALVAYF++ FT+CHK GFST P+
Sbjct: 247 TNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPE 306
Query: 341 SRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQ 400
S THWKQTV Y+ED LT+ GE I G++ + PN KN RD+D + +G+ +S
Sbjct: 307 SPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCST 366
Query: 401 YYKMR 405
Y+MR
Sbjct: 367 DYRMR 371
|
|
| MGI|MGI:107846 Prmt1 "protein arginine N-methyltransferase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
Identities = 205/365 (56%), Positives = 270/365 (73%)
Query: 45 ASSILDDSVAAPVDGTAIE---DEAMC-DADVSMIDGEDDKTSADYYFDSYSHFGIHEEM 100
A+ I+++ VA +G +++ +E C A+ S +D TS DYYFDSY+HFGIHEEM
Sbjct: 7 ANCIMENFVATLANGMSLQPPLEEVSCGQAESSEKPNAEDMTSKDYYFDSYAHFGIHEEM 66
Query: 101 LKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMA 160
LKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++ A
Sbjct: 67 LKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYA 126
Query: 161 KQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLV 220
+IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVL+ARDKWL
Sbjct: 127 VKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLA 186
Query: 221 DDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIV 280
DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+V
Sbjct: 187 PDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLV 246
Query: 281 TNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGPK 340
TN L+K +DI + D +FT+PF L +RNDY+HALVAYF++ FT+CHK GFST P+
Sbjct: 247 TNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPE 306
Query: 341 SRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQ 400
S THWKQTV Y+ED LT+ GE I G++ + PN KN RD+D + +G+ +S
Sbjct: 307 SPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCST 366
Query: 401 YYKMR 405
Y+MR
Sbjct: 367 DYRMR 371
|
|
| UNIPROTKB|Q99873 PRMT1 "Protein arginine N-methyltransferase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1081 (385.6 bits), Expect = 2.1e-109, P = 2.1e-109
Identities = 204/361 (56%), Positives = 267/361 (73%)
Query: 49 LDDSVAAPVDGTAIE---DEAMC-DADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDV 104
+++ VA +G +++ +E C A+ S +D TS DYYFDSY+HFGIHEEMLKD
Sbjct: 1 MENFVATLANGMSLQPPLEEVSCGQAESSEKPNAEDMTSKDYYFDSYAHFGIHEEMLKDE 60
Query: 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIV 164
VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++ A +IV
Sbjct: 61 VRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIV 120
Query: 165 EANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGI 224
+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVLYARDKWL DG+
Sbjct: 121 KANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLYARDKWLAPDGL 180
Query: 225 VLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQ 284
+ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+VTN
Sbjct: 181 IFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNAC 240
Query: 285 LLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGPKSRAT 344
L+K +DI + D +FT+PF L +RNDY+HALVAYF++ FT+CHK GFST P+S T
Sbjct: 241 LIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYT 300
Query: 345 HWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKM 404
HWKQTV Y+ED LT+ GE I G++ + PN KN RD+D + +G+ +S Y+M
Sbjct: 301 HWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRM 360
Query: 405 R 405
R
Sbjct: 361 R 361
|
|
| UNIPROTKB|E2R6B6 PRMT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1076 (383.8 bits), Expect = 7.0e-109, P = 7.0e-109
Identities = 206/368 (55%), Positives = 270/368 (73%)
Query: 45 ASSILDDSVAAPVDGTAIE---DEAMC-DADVSMIDGEDDKTSADYYFDSYSHFGIHEEM 100
A+ I+++ VA +G +++ +E C A+ S +D TS DYYFDSY+HFGIHEEM
Sbjct: 7 ANCIMENFVATLANGMSLQPPLEEVSCGQAESSEKPNAEDMTSKDYYFDSYAHFGIHEEM 66
Query: 101 LKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYA---VECSQMA 157
LKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS ++
Sbjct: 67 LKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGGPQIECSSIS 126
Query: 158 NMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDK 217
+ A +IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLNTVLYARDK
Sbjct: 127 DYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLYARDK 186
Query: 218 WLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQN 277
WL DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD
Sbjct: 187 WLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPK 246
Query: 278 QIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFST 337
Q+VTN L+K +DI + D +FT+PF L +RNDY+HALVAYF++ FT+CHK GFST
Sbjct: 247 QLVTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFST 306
Query: 338 GPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAIS 397
P+S THWKQTV Y+ED LT+ GE I G++ + PN KN RD+D + +G+ +S
Sbjct: 307 SPESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELS 366
Query: 398 RIQYYKMR 405
Y+MR
Sbjct: 367 CSTDYRMR 374
|
|
| UNIPROTKB|Q5E949 HRMT1L2 "HMT1 hnRNP methyltransferase-like 2 isoform 3" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1073 (382.8 bits), Expect = 1.5e-108, P = 1.5e-108
Identities = 201/342 (58%), Positives = 256/342 (74%)
Query: 65 EAMC-DADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKD 123
E C A+ S +D TS DYYFDSY+HFGIHEEMLKD VRT +Y+N ++ N+ LFKD
Sbjct: 12 EVSCGQAESSEKPNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKD 71
Query: 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEI 183
KVVLDVG+GTGIL +F AKAGA V +ECS +++ A +IV+AN +V+T++KGK+EE+
Sbjct: 72 KVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEV 131
Query: 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYK 243
ELPV KVDIIISEWMGY L +E+MLNTVLYARDKWL DG++ PD+A+LY+TAIED +YK
Sbjct: 132 ELPVEKVDIIISEWMGYCLFYESMLNTVLYARDKWLAPDGLIFPDRATLYVTAIEDRQYK 191
Query: 244 DDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTA 303
D KI +W NVYGFDMSCIK A+ EPLVD VD Q+VTN L+K +DI + D +FT+
Sbjct: 192 DYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTS 251
Query: 304 PFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGE 363
PF L +RNDY+HALVAYF++ FT+CHK GFST P+S THWKQTV Y+ED LT+ GE
Sbjct: 252 PFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTGE 311
Query: 364 AISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 405
I G++ + PN KN RD+D + +G+ +S Y+MR
Sbjct: 312 EIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRMR 353
|
|
| UNIPROTKB|Q28F07 prmt1 "Protein arginine N-methyltransferase 1" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 1072 (382.4 bits), Expect = 1.9e-108, P = 1.9e-108
Identities = 200/342 (58%), Positives = 256/342 (74%)
Query: 65 EAMCDADVSMID-GEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKD 123
E C S + +D TS DYYFDSY+HFGIHEEMLKD VRT +Y+N ++ N+ LFKD
Sbjct: 10 EVSCTQPESSVKPNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKD 69
Query: 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEI 183
KVVLDVG+GTGIL +F AKAGA V +ECS +++ A +IV+AN +V+T++KGK+EE+
Sbjct: 70 KVVLDVGSGTGILCMFAAKAGAKKVIGIECSSISDYAIKIVKANKLDHVVTIIKGKVEEV 129
Query: 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYK 243
ELPV KVDIIISEWMGY L +E+MLNTV+YARDKWL DG++ PD+A+LY+TAIED +YK
Sbjct: 130 ELPVEKVDIIISEWMGYCLFYESMLNTVIYARDKWLTPDGLIFPDRATLYVTAIEDRQYK 189
Query: 244 DDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTA 303
D KI +W NVYGFDMSCIK A+ EPLVD VD Q+VTN L+K +DI + D +FT+
Sbjct: 190 DYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVDDLTFTS 249
Query: 304 PFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGE 363
PF L +RNDYIHALVAYF++ FT+CHK GFST P+S THWKQTV Y+ED LT+ GE
Sbjct: 250 PFCLQVKRNDYIHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTGE 309
Query: 364 AISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 405
I G++++ PN KN RD+D + +G+ +S Y+MR
Sbjct: 310 EIFGTISMKPNAKNNRDLDFTVDIDFKGQLCELSCSTDYRMR 351
|
|
| UNIPROTKB|Q8AV13 prmt1-a "Protein arginine N-methyltransferase 1-A" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 1072 (382.4 bits), Expect = 1.9e-108, P = 1.9e-108
Identities = 201/346 (58%), Positives = 256/346 (73%)
Query: 60 TAIEDEAMCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKF 119
T IED + + +D TS DYYFDSY+HFGIHEEMLKD VRT +Y+N ++ N+
Sbjct: 24 TPIEDVNSAPPEGGVKTNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRH 83
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 179
LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++ A +IV+AN +V+T++KGK
Sbjct: 84 LFKDKVVLDVGSGTGILCMFAAKAGAKKVIGIECSSISDYAIKIVKANKLDHVVTIIKGK 143
Query: 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIED 239
+EE+ELPV KVDIIISEWMGY L +E+MLNTV+YARDKWL DG++ PD+A+LY+TAIED
Sbjct: 144 VEEVELPVEKVDIIISEWMGYCLFYESMLNTVIYARDKWLTPDGLIFPDRATLYITAIED 203
Query: 240 AEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDA 299
+YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+V+N L+K +DI + D
Sbjct: 204 RQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVSNACLIKEVDIYTVKVDDL 263
Query: 300 SFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGPKSRATHWKQTVLYLEDVLTI 359
SFT+PF L +RNDYIHALVAYF++ FT+CHK GFST P+S THWKQTV Y+ED LT+
Sbjct: 264 SFTSPFCLQVKRNDYIHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTV 323
Query: 360 CEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 405
GE I G++ + PN KN RD+D +G+ +S Y+MR
Sbjct: 324 KTGEEIFGTIGMKPNAKNNRDLDFTFDIDFKGQLCELSCSTDYRMR 369
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q54EF2 | ANM1_DICDI | 2, ., 1, ., 1, ., 1, 2, 5 | 0.5740 | 0.8 | 0.9501 | yes | no |
| Q9URX7 | ANM1_SCHPO | 2, ., 1, ., 1, ., - | 0.5691 | 0.7679 | 0.9147 | yes | no |
| Q5RGQ2 | ANM8B_DANRE | 2, ., 1, ., 1, ., - | 0.6024 | 0.8074 | 0.7804 | yes | no |
| Q9JIF0 | ANM1_MOUSE | 2, ., 1, ., 1, ., 1, 2, 5 | 0.5616 | 0.8913 | 0.9730 | yes | no |
| Q9SU94 | ANM11_ARATH | 2, ., 1, ., 1, ., 1, 2, 5 | 0.7941 | 0.9135 | 0.9487 | yes | no |
| Q99873 | ANM1_HUMAN | 2, ., 1, ., 1, ., 1, 2, 5 | 0.5650 | 0.8814 | 0.9889 | yes | no |
| Q63009 | ANM1_RAT | 2, ., 1, ., 1, ., 1, 2, 5 | 0.5694 | 0.8716 | 1.0 | yes | no |
| Q8AV13 | ANM1A_XENLA | 2, ., 1, ., 1, ., 1, 2, 5 | 0.5809 | 0.8543 | 0.9376 | N/A | no |
| Q28F07 | ANM1_XENTR | 2, ., 1, ., 1, ., 1, 2, 5 | 0.5759 | 0.8444 | 0.9743 | yes | no |
| O82210 | ANM12_ARATH | 2, ., 1, ., 1, ., - | 0.8226 | 0.8320 | 0.9207 | no | no |
| Q0J2C6 | ANM1_ORYSJ | 2, ., 1, ., 1, ., - | 0.8619 | 0.8049 | 0.8423 | yes | no |
| Q6VRB0 | ANM1B_XENLA | 2, ., 1, ., 1, ., 1, 2, 5 | 0.5963 | 0.8074 | 0.9316 | N/A | no |
| A2Z0C0 | ANM1_ORYSI | 2, ., 1, ., 1, ., - | 0.8619 | 0.8049 | 0.8423 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 405 | |||
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 3e-13 | |
| COG4123 | 248 | COG4123, COG4123, Predicted O-methyltransferase [G | 2e-09 | |
| COG4076 | 252 | COG4076, COG4076, Predicted RNA methylase [General | 3e-09 | |
| PRK00517 | 250 | PRK00517, prmA, ribosomal protein L11 methyltransf | 1e-08 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 3e-08 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 3e-08 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 6e-08 | |
| pfam06325 | 294 | pfam06325, PrmA, Ribosomal protein L11 methyltrans | 8e-07 | |
| COG2890 | 280 | COG2890, HemK, Methylase of polypeptide chain rele | 1e-06 | |
| COG2242 | 187 | COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme | 3e-06 | |
| COG2263 | 198 | COG2263, COG2263, Predicted RNA methylase [Transla | 4e-06 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 5e-06 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 7e-06 | |
| COG2264 | 300 | COG2264, PrmA, Ribosomal protein L11 methylase [Tr | 8e-06 | |
| PRK11873 | 272 | PRK11873, arsM, arsenite S-adenosylmethyltransfera | 1e-05 | |
| pfam05175 | 170 | pfam05175, MTS, Methyltransferase small domain | 1e-05 | |
| COG1189 | 245 | COG1189, COG1189, Predicted rRNA methylase [Transl | 2e-05 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 5e-05 | |
| TIGR00406 | 288 | TIGR00406, prmA, ribosomal protein L11 methyltrans | 6e-05 | |
| COG2265 | 432 | COG2265, TrmA, SAM-dependent methyltransferases re | 8e-05 | |
| TIGR03534 | 251 | TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met | 1e-04 | |
| TIGR01444 | 144 | TIGR01444, fkbM_fam, methyltransferase, FkbM famil | 1e-04 | |
| PRK09328 | 275 | PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth | 1e-04 | |
| pfam03602 | 183 | pfam03602, Cons_hypoth95, Conserved hypothetical p | 1e-04 | |
| COG1092 | 393 | COG1092, COG1092, Predicted SAM-dependent methyltr | 2e-04 | |
| PRK07580 | 230 | PRK07580, PRK07580, Mg-protoporphyrin IX methyl tr | 2e-04 | |
| PRK14968 | 188 | PRK14968, PRK14968, putative methyltransferase; Pr | 4e-04 | |
| COG2520 | 341 | COG2520, COG2520, Predicted methyltransferase [Gen | 5e-04 | |
| PRK14896 | 258 | PRK14896, ksgA, 16S ribosomal RNA methyltransferas | 7e-04 | |
| COG2519 | 256 | COG2519, GCD14, tRNA(1-methyladenosine) methyltran | 8e-04 | |
| TIGR00536 | 284 | TIGR00536, hemK_fam, HemK family putative methylas | 0.001 | |
| TIGR02021 | 219 | TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m | 0.001 | |
| COG2227 | 243 | COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m | 0.002 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 0.003 | |
| PRK14967 | 223 | PRK14967, PRK14967, putative methyltransferase; Pr | 0.003 | |
| COG2230 | 283 | COG2230, Cfa, Cyclopropane fatty acid synthase and | 0.003 | |
| PTZ00098 | 263 | PTZ00098, PTZ00098, phosphoethanolamine N-methyltr | 0.004 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 3e-13
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEI-E 184
VLD+G GTG L+L A A V V+ S +A + A ++ + VLKG EE+
Sbjct: 2 VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP 61
Query: 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
D+IIS L E++ + AR L G+++
Sbjct: 62 EADESFDVIIS-DPPLHHLVEDLARFLEEARRL-LKPGGVLV 101
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 2e-09
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 119 FLFKDKVVLDVGAGTGILSLFCA-KAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVL 176
+ K +LD+GAG G L L A + A + VE + A MA++ V N I V+
Sbjct: 41 PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVI 100
Query: 177 KGKIEEIE--LPVTKVDIIIS 195
+ I+E L D+II
Sbjct: 101 EADIKEFLKALVFASFDLIIC 121
|
Length = 248 |
| >gnl|CDD|226562 COG4076, COG4076, Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 3e-09
Identities = 37/138 (26%), Positives = 67/138 (48%), Gaps = 16/138 (11%)
Query: 97 HEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-Q 155
H ++L+DV R + + I + + D+GAG+GILS+ A A A V A+E +
Sbjct: 11 HLDLLRDVERLAVFTSAIAE----VAEDTFADLGAGSGILSVVAAHA-AERVIAIEKDPK 65
Query: 156 MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFEN---MLNTVL 212
A +A++ + G N V+ G + + D++I E + L+ E ++N VL
Sbjct: 66 RARLAEENLHVPGDVN-WEVVVGDARDYD--FENADVVICEMLDTALIEEKQVPVINAVL 122
Query: 213 YARDKWLVDDGIVLPDKA 230
++L D ++P +
Sbjct: 123 ----EFLRYDPTIIPQEV 136
|
Length = 252 |
| >gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 1e-08
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 176
K + K VLDVG G+GIL++ AK GA V AV+ A A++ E NG + +
Sbjct: 115 KLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLP 174
Query: 177 KGKIEEIELPVTKVDIII 194
+G K D+I+
Sbjct: 175 QGD--------LKADVIV 184
|
Length = 250 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 3e-08
Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 9/107 (8%)
Query: 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGK 179
VLD+G GTG L++ A+ A V V+ S +M +A++ + IT ++G
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPR-ITFVQGD 59
Query: 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
+ + D + G +L+ + L G ++
Sbjct: 60 APDALDLLEGFDAVFI--GGGGGDLLELLDALA----SLLKPGGRLV 100
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-08
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 120 LFKDKVVLDVGAGTGILSLFCA-KAGA-AHVYAVECS-QMANMAKQIVEANGFSNVITVL 176
L VLD+G GTG L+ A K G A V ++ S + AK+ + G+ NV +
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENV-EFI 59
Query: 177 KGKIEEIE---LPVTKVDIIIS 195
+G IEE+ L D++IS
Sbjct: 60 QGDIEELPQLQLEDNSFDVVIS 81
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 6e-08
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 123 DKVVLDVGAGTGILSLFCAKAGA-AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI 180
VLD GAG+G L A+AG A V VE + A +A++ + G + + V+ G
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60
Query: 181 EEI-ELPVTKVDIII-----SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
E+ ELP D+++ G ++ + L A + L G+++
Sbjct: 61 RELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLV 112
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA) | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 8e-07
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 176
+ + VLDVG G+GIL++ K GA V V+ +A AK+ E NG + V
Sbjct: 156 SLVKPGETVLDVGCGSGILAIAALKLGAKKVVGVDIDPVAVRAAKENAELNGVEAQLEVY 215
Query: 177 KGKIEEIELPVTKVDIII 194
+LP K D+++
Sbjct: 216 LPG----DLPEGKADVVV 229
|
This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294 |
| >gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGK 179
DK +LD+G G+G +++ AK G A V AV+ S A +A++ E NG V+ V
Sbjct: 110 LDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDL 169
Query: 180 IEEIELPVTKVDIIIS 195
E + K D+I+S
Sbjct: 170 FEPLR---GKFDLIVS 182
|
Length = 280 |
| >gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-06
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKGK 179
+ D+GAGTG +++ A AG + V A+E + + ++ G N+ V++G
Sbjct: 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNL-EVVEGD 92
Query: 180 IEEIELPVTKVDII 193
E + D I
Sbjct: 93 APEALPDLPSPDAI 106
|
Length = 187 |
| >gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 4e-06
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKGKIEE 182
K VLD+GAGTGIL++ A GA+ V AV+ + +A+ E G +E
Sbjct: 47 KTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL---------GDVEF 97
Query: 183 IELPVTKVD 191
+ V+
Sbjct: 98 VVADVSDFR 106
|
Length = 198 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 5e-06
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184
+LD+G GTG + A+AG + V V+ S+ +AK+ + G + + ++
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPK--VRFVVADARDLP 58
Query: 185 LPVTKVDIIISEWMGYFLLFE 205
D++I
Sbjct: 59 FEEGSFDLVIC-AGLSLDYLS 78
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 7e-06
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 127 LDVGAGTGILSLFCAKAGAAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKGKIEEIEL 185
LDVG GTG+L+ A+ G A V V+ +M +A++ + G E++
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKR-------APRKFVVGDAEDLPF 53
Query: 186 PVTKVDIIISEWM 198
P D+++S +
Sbjct: 54 PDESFDVVVSSLV 66
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 8e-06
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 176
K L K K VLDVG G+GIL++ AK GA V V+ A A++ NG ++
Sbjct: 158 KLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAK 217
Query: 177 KGKIEEIELPVTKVDIII 194
+ E D+I+
Sbjct: 218 GFLLLE-VPENGPFDVIV 234
|
Length = 300 |
| >gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 125 VVLDVGAGTGILSLFCAKA-GA-AHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIE 181
VLD+G+G G A+ G V V+ + +M A+ G++NV G+IE
Sbjct: 80 TVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNV-EFRLGEIE 138
Query: 182 EIELPVTKVDIIIS 195
+ + VD+IIS
Sbjct: 139 ALPVADNSVDVIIS 152
|
Length = 272 |
| >gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 1e-05
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGK 179
VLD+G G G+L AK V V+ + A A+ + ANG N
Sbjct: 31 LGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLENGEVFWSDL 90
Query: 180 IEEIELPVTKVDIIIS 195
+E K D+IIS
Sbjct: 91 YSAVE--PGKFDLIIS 104
|
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170 |
| >gnl|CDD|224110 COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVE 152
+ K KVVLD+G+ TG + + GA HVYAV+
Sbjct: 75 ELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVD 109
|
Length = 245 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 5e-05
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 116 QNKFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVE-CSQMANMAKQIVEANGFSNVI 173
+ K +F VLD+G GTG L+ K A A + + M AK + N +
Sbjct: 28 KEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQAKTKLSEN-----V 82
Query: 174 TVLKGKIEEIELPVTKVDIIIS 195
+ G E++ L + D+I+S
Sbjct: 83 QFICGDAEKLPLEDSSFDLIVS 104
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 6e-05
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVEC-SQMANMAKQIVEANGFSNVITV-L 176
KDK V+DVG G+GILS+ K GAA V ++ A++ E N S+ + V L
Sbjct: 156 LDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKL 215
Query: 177 KGKIEEIELPVTKVDIII 194
+ IE D+I+
Sbjct: 216 IYLEQPIEGK---ADVIV 230
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 288 |
| >gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 8e-05
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG 178
L + VLD+ G G L AK V+ VE S A++ ANG NV + G
Sbjct: 291 LAGGERVLDLYCGVGTFGLPLAK-RVKKVHGVEISPEAVEAAQENAAANGIDNV-EFIAG 348
Query: 179 KIEEI 183
EE
Sbjct: 349 DAEEF 353
|
Length = 432 |
| >gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 1e-04
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGK 179
VLD+G G+G ++L AK A V AV+ S A +A++ G NV L+
Sbjct: 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNV-EFLQSD 145
Query: 180 IEEIELPVTKVDIIIS 195
E LP K D+I+S
Sbjct: 146 WFE-PLPGGKFDLIVS 160
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251 |
| >gnl|CDD|233415 TIGR01444, fkbM_fam, methyltransferase, FkbM family | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 125 VVLDVGAGTGILSLFCAKAGA-AHVYAVECS-QMANMAKQIVEANGFSNVITV---LKGK 179
VV+DVGA G SL+ A+ GA V A E + ++ V+ N NV+ + + +
Sbjct: 1 VVIDVGANIGDFSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR 60
Query: 180 IEEIELPVT 188
E+E V+
Sbjct: 61 DGELEFNVS 69
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. Length = 144 |
| >gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 1e-04
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGK 179
+ VLD+G G+G ++L AK A V AV+ S A +A++ + + V L+G
Sbjct: 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARV-EFLQGD 166
Query: 180 IEEIELPVTKVDIIIS 195
E LP + D+I+S
Sbjct: 167 WFE-PLPGGRFDLIVS 181
|
Length = 275 |
| >gnl|CDD|202698 pfam03602, Cons_hypoth95, Conserved hypothetical protein 95 | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 34/138 (24%), Positives = 52/138 (37%), Gaps = 29/138 (21%)
Query: 103 DVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQ 162
D VR ++ N++ F VLD+ AG+G L L GAA V VE + A
Sbjct: 26 DRVR-EALFNIL-APYFEIGGARVLDLFAGSGALGLEALSRGAASVVFVEKDK---KAVA 80
Query: 163 IVEAN----GFSNVITVLKGKIEEIELPVTK----VDIIISEWMGYFL-------LFENM 207
++ N G VL+ L + D++ FL L E
Sbjct: 81 TLKENLEALGLEGETAVLRNDAARALLRLAGKGPPFDLV-------FLDPPYAKGLIEEA 133
Query: 208 LNTVLYARDKWLVDDGIV 225
L + A + WL + ++
Sbjct: 134 LELL--AENGWLNPNALI 149
|
Length = 183 |
| >gnl|CDD|224017 COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFS 170
K VL++ + TG S+ A GA+ V +V+ S+ A A++ E NG
Sbjct: 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLD 266
|
Length = 393 |
| >gnl|CDD|236059 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI 180
+LD G G G LS+ A+ G A V A + S QM A++ G + IT G +
Sbjct: 63 TGLRILDAGCGVGSLSIPLARRG-AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL 121
Query: 181 EEI 183
E +
Sbjct: 122 ESL 124
|
Length = 230 |
| >gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 12/56 (21%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHV------YAVECSQMANMAKQIVEANGFSN 171
K VL+VG G+GI+++ AK G V YAVEC AK + N N
Sbjct: 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVEC------AKCNAKLNNIRN 72
|
Length = 188 |
| >gnl|CDD|225318 COG2520, COG2520, Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 176
+ + + + VLD+ AG G S+ AK G VYA++ + A K+ + N + +
Sbjct: 184 ELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPI 243
Query: 177 KGKIEEIELPVTKVDIIISEWMGYF 201
G E+ + D II MG
Sbjct: 244 LGDAREVAPELGVADRII---MGLP 265
|
Length = 341 |
| >gnl|CDD|237852 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 7e-04
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVEC-SQMANMAKQIVEANGFSNVITVLKG 178
VL++G G G L+ AK A VYA+E ++A + + NV +++G
Sbjct: 27 DTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRD--DEIAAGNV-EIIEG 82
Query: 179 KIEEIELPVTKVDIIIS 195
+++LP + + ++S
Sbjct: 83 DALKVDLP--EFNKVVS 97
|
Length = 258 |
| >gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 8e-04
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVEC-SQMANMAKQIVEANGFSNVITVL 176
+ VL+ G G+G L+ + A+A HV E A A++ + G + +T+
Sbjct: 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLK 151
Query: 177 KGKIEEIELPVTKVDIII 194
G + E VD +
Sbjct: 152 LGDVREGIDE-EDVDAVF 168
|
Length = 256 |
| >gnl|CDD|129627 TIGR00536, hemK_fam, HemK family putative methylases | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 126 VLDVGAGTGILSLFCAKAGA-AHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKIEEI 183
+LD+G G+G ++L A A V AV+ S A +A++ E N + + ++ + E
Sbjct: 118 ILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE- 176
Query: 184 ELPVTKVDIIIS 195
L K+DII+S
Sbjct: 177 PLAGQKIDIIVS 188
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain [Protein fate, Protein modification and repair]. Length = 284 |
| >gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.001
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVL 176
K K K VLD G GTG+LS+ AK G A V AV+ S QM MA+ + + +
Sbjct: 51 KDPLKGKRVLDAGCGTGLLSIELAKRG-AIVKAVDISEQMVQMARNRAQGRDVAGNVEFE 109
Query: 177 KGKIEEIE 184
+ +
Sbjct: 110 VNDLLSLC 117
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219 |
| >gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 117 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANM-AKQIVEANGFSNVITV 175
+F VLDVG G GILS A+ G A V ++ S+ AK +G + I
Sbjct: 54 LRFDLPGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGVN--IDY 110
Query: 176 LKGKIEEIELPVTKVDIIIS 195
+ +E++ + D++
Sbjct: 111 RQATVEDLASAGGQFDVVTC 130
|
Length = 243 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.003
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 119 FLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVE-CSQMANMAKQIVEANGFSNVITVL 176
+ VLDV GTG ++L AK G V ++ M +A++ ++ G NV V+
Sbjct: 48 GIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVV 107
Query: 177 KGKIEEIELP 186
G E + P
Sbjct: 108 -GDAENLPFP 116
|
Length = 238 |
| >gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.003
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQMA 157
VLD+ G+G L++ A AGA V AV+ S+ A
Sbjct: 40 VLDLCTGSGALAVAAAAAGAGSVTAVDISRRA 71
|
Length = 223 |
| >gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.003
Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 19/109 (17%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184
+LD+G G G L+++ A+ V V S+ A++ + A G + + V + E
Sbjct: 76 LLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE 135
Query: 185 LPVTKVDIIIS----EWMG---YFLLFENMLNTVLYARDKWLVDDGIVL 226
D I+S E +G Y F+ + L G +L
Sbjct: 136 ---EPFDRIVSVGMFEHVGKENYDDFFKKV--------YALLKPGGRML 173
|
Length = 283 |
| >gnl|CDD|173391 PTZ00098, PTZ00098, phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 38.4 bits (89), Expect = 0.004
Identities = 48/172 (27%), Positives = 73/172 (42%), Gaps = 28/172 (16%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKGKIEEIE 184
VLD+G+G G + + AHV+ V+ C +M N+AK N I I + +
Sbjct: 56 VLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK---NKIEFEANDILKKD 112
Query: 185 LPVTKVDIIISEWMGYFLLFEN--MLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEY 242
P D+I S L + + L Y KWL +GI+L I D Y
Sbjct: 113 FPENTFDMIYSRDAILHLSYADKKKLFEKCY---KWLKPNGILL----------ITD--Y 157
Query: 243 KDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNC--QLLKTMDIS 292
DKIE W+ F K++ + P+ + D ++ +C Q + DIS
Sbjct: 158 CADKIENWDE--EFKAYIKKRKYTLIPIQEYGD---LIKSCNFQNVVAKDIS 204
|
Length = 263 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 405 | |||
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 100.0 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 100.0 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 100.0 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 99.96 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 99.91 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 99.88 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.82 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.79 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.78 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.76 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.75 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.73 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.65 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.65 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.65 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.64 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.64 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.64 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.64 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.63 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.62 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.61 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.6 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.6 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.6 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.6 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.59 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.59 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 99.58 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.58 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.58 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.57 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.56 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.55 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.55 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.55 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.54 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.53 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.52 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.52 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.52 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.52 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.52 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.5 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.5 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.5 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.5 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.49 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.49 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.49 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.48 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.47 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.47 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.47 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.46 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.45 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.45 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.45 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.45 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.45 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.44 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.44 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.44 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.44 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.44 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.43 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.43 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.43 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.42 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.42 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.42 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.42 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.41 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.4 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.4 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.39 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.39 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.39 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.39 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.39 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.38 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.38 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.38 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.38 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.37 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.37 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.36 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.36 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.36 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.35 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.34 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.34 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.34 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.34 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.33 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.33 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.33 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.32 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.32 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.32 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.32 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.31 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.31 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.31 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.3 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.3 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.29 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.28 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.28 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.28 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.28 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.27 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.27 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.26 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.25 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.25 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.25 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.24 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.24 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.23 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.23 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.23 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.23 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.23 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.22 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.22 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.21 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.21 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.21 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.2 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.2 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.19 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.19 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.18 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.17 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.17 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.17 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.16 | |
| PLN02476 | 278 | O-methyltransferase | 99.16 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.16 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.15 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.15 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.15 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.13 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.12 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.12 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.11 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.11 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.1 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.09 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.09 | |
| PLN02366 | 308 | spermidine synthase | 99.08 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.08 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 99.07 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.06 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.05 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.04 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 99.03 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 99.03 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.03 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 99.03 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.03 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.02 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.01 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.98 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.97 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.97 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.97 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.94 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.94 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.91 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.89 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.88 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.87 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.87 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.86 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.85 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.82 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.81 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.81 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.81 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.81 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.78 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.77 | |
| PLN02823 | 336 | spermine synthase | 98.76 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.76 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.75 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.75 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.71 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.7 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.7 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.67 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.67 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.66 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.66 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.66 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.65 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.65 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.64 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.61 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.58 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.55 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.55 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.55 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.55 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.54 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.51 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.51 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.5 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.48 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.47 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.46 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.46 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.46 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.44 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.44 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.42 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.37 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.35 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.32 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.32 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 98.28 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.27 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.2 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.2 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.19 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.18 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 98.17 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.16 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.11 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.1 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.09 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 98.09 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.05 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 98.02 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.02 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.99 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.97 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.94 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.92 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.91 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.9 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.9 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.89 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.87 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.85 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 97.84 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.83 | |
| PHA01634 | 156 | hypothetical protein | 97.78 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.73 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.73 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.73 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.68 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.61 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.61 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.6 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.58 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.4 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.39 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.39 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 97.37 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.35 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.24 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 97.24 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 97.22 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.18 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.16 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.03 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.01 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.89 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 96.84 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 96.63 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 96.41 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 96.41 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.4 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 96.32 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 96.29 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 96.29 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 96.28 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 96.28 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 96.26 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 96.26 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.13 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.96 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 95.93 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 95.91 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 95.88 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 95.86 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 95.85 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 95.85 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 95.72 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 95.72 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 95.64 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 94.8 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 94.64 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 94.57 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 94.49 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 94.42 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 94.33 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 94.26 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 94.19 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 94.12 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 94.06 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 93.9 | |
| PRK13699 | 227 | putative methylase; Provisional | 93.84 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 93.8 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 93.75 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 93.75 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 93.66 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 93.58 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 93.56 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 93.55 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 93.3 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 93.11 | |
| KOG2912 | 419 | consensus Predicted DNA methylase [Function unknow | 92.84 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 92.8 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 92.64 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 92.64 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 92.46 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 92.28 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 91.97 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 91.94 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 91.79 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 91.78 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 91.73 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 91.63 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 91.61 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 91.31 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 91.24 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 91.2 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 91.19 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 91.18 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 90.98 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 90.93 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 90.87 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 90.82 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 90.68 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 90.5 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 90.42 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 90.28 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 90.1 | |
| PLN02494 | 477 | adenosylhomocysteinase | 89.96 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 89.93 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 89.81 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 89.71 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 89.66 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 89.55 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 89.39 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 89.33 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 89.3 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 89.23 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 89.2 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 89.03 | |
| PRK13699 | 227 | putative methylase; Provisional | 89.0 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 88.93 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 88.66 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 88.48 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 88.4 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 88.39 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 88.07 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 88.04 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 87.78 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 87.77 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 87.73 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 87.71 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 87.66 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 87.63 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 87.6 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 87.25 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 87.16 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 87.1 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 87.09 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 87.04 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 86.79 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 86.7 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 86.68 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 86.66 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 86.1 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 86.09 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 86.0 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 85.81 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 85.8 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 85.72 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 85.63 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 85.45 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 85.27 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 85.23 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 85.19 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 85.11 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 85.09 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 84.95 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 84.91 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 84.89 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 84.75 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 84.61 | |
| cd08263 | 367 | Zn_ADH10 Alcohol dehydrogenases of the MDR family. | 84.39 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 84.29 | |
| cd08265 | 384 | Zn_ADH3 Alcohol dehydrogenases of the MDR family. | 84.04 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 83.85 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 83.83 | |
| cd05279 | 365 | Zn_ADH1 Liver alcohol dehydrogenase and related zi | 83.53 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 83.42 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 83.35 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 83.33 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 83.32 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 83.11 | |
| cd08240 | 350 | 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy | 83.01 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 82.98 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 82.44 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 82.26 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 81.67 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 81.44 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 81.42 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 80.82 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 80.73 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 80.72 | |
| cd08286 | 345 | FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik | 80.4 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 80.36 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 80.33 |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=467.40 Aligned_cols=328 Identities=64% Similarity=1.064 Sum_probs=317.2
Q ss_pred CCCCccccccccccCchhhhHHhhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHH
Q 015534 78 EDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA 157 (405)
Q Consensus 78 ~~~~~~~~~~~~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~ 157 (405)
......++.||++|+++++|.+||+|..|+..|+.++..+..+.++++|||+|||||++++++|++|+++|+|||.|.++
T Consensus 16 ~~d~~~~~~Yf~sY~~~~iheeML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia 95 (346)
T KOG1499|consen 16 PKDMTSDDYYFDSYAHFGIHEEMLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA 95 (346)
T ss_pred ccccchhhhhhhhhhchHHHHHHHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH
Confidence 34455779999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred HHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCceeEEEEc
Q 015534 158 NMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAI 237 (405)
Q Consensus 158 ~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~ 237 (405)
+.|++.+..|++.+.|+++.+.++++.+|.+++|+|+++|||++++.+.++..++.+..++|+|||.++|..+++|++++
T Consensus 96 ~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l~~i 175 (346)
T KOG1499|consen 96 DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYLAAI 175 (346)
T ss_pred HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccceEEEEec
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccccccchhhhhhhccCCeEEeeCCCcccccceeeeEeeCCCCCCCCCceeeeEEEEEeecceEeE
Q 015534 238 EDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHA 317 (405)
Q Consensus 238 ~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g 317 (405)
..+.+....+.||.++||||++++.+.+..+|+++.+++.+++++|+.+.++|+.+...+++.++.+|++.+.++|.+||
T Consensus 176 ~d~~~~~~~i~fW~~Vygfdms~~~~~~~~e~lv~vv~~~~l~t~~~~i~~~Dl~t~~i~d~~F~s~f~l~v~r~~~i~g 255 (346)
T KOG1499|consen 176 EDDSYKDDKIGFWDDVYGFDMSCIKKIAIKEPLVDVVDPEQLLTEPCLIKEFDLYTVKIEDLSFTSPFKLKVTRNGYLHA 255 (346)
T ss_pred cCchhhhhhcCccccccccchhhhhhhhhcccceeccChhHhcccceeeEEeeeeeeeccceeeccceEEEEccCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEEcCCC--ceeEEecCCCCCCCCeeeEEEecCCceecCCCCEEEEEEEEeeCCCCCceEEEEEEEEEcce-ee
Q 015534 318 LVAYFDVTFTKCH--KLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGR-HS 394 (405)
Q Consensus 318 ~~~wf~~~l~~~~--~~~~lst~p~~~~~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~-~~ 394 (405)
|++|||+.|..+. ..+.+||+|.++.|||+|+||+|++|+.|++|+.|.+++.+++++.++|+++|.++|++.++ ..
T Consensus 256 ~v~yFDv~F~~~~~~~~~~fST~P~~p~THWKQtVfyl~~p~~v~~ge~i~g~it~~~~~~~~R~l~~~l~~~~~~~~~~ 335 (346)
T KOG1499|consen 256 FVAYFDVEFTGCHGKKRLGFSTSPSSPYTHWKQTVFYLENPLTVKEGEDITGTITMKPNKKNNRDLDISLSLNFKGQGLC 335 (346)
T ss_pred EEEEEEEeeccCCCCCcceeecCCCCCCceeeeEEEEecCccceecCceEEEEEEEeeCCCCCccceEEEEEecCCcccc
Confidence 9999999999866 78999999999999999999999999999999999999999999999999999999999999 77
Q ss_pred eecceEEeeeC
Q 015534 395 AISRIQYYKMR 405 (405)
Q Consensus 395 ~~~~~~~~~~~ 405 (405)
+++.++.|+||
T Consensus 336 ~~~~~~~y~~~ 346 (346)
T KOG1499|consen 336 SFSESDSYPMR 346 (346)
T ss_pred ccccccccccC
Confidence 79999999996
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=333.98 Aligned_cols=316 Identities=38% Similarity=0.638 Sum_probs=280.0
Q ss_pred cCCCCCCCccccccccccCchhhhHHhhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEec
Q 015534 74 MIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVEC 153 (405)
Q Consensus 74 ~~~~~~~~~~~~~~~~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~ 153 (405)
.+...-+..++..||..|+.+...++|+.|..|+..|.++|..+.....++.|||+|||+|+++++++++|+++|++||.
T Consensus 129 vFs~rtEesSA~~YF~~YG~L~~QQNMmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEA 208 (517)
T KOG1500|consen 129 VFSQRTEESSASQYFQFYGYLSQQQNMMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEA 208 (517)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEeh
Confidence 34444555667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCceeE
Q 015534 154 SQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLY 233 (405)
Q Consensus 154 s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~ 233 (405)
|+|.+.|++.++.|.+.++|+++.+.++++.+| +++|+|++++|++.+.+|.+++..+.+. ++|||.|.++|....++
T Consensus 209 S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkMfPT~gdiH 286 (517)
T KOG1500|consen 209 SEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKMFPTVGDIH 286 (517)
T ss_pred hHHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCcccCccccee
Confidence 999999999999999999999999999999998 9999999999999999999999999888 99999999999999999
Q ss_pred EEEccccccccc---cccccc--ccccccchhhhhhh----ccCCeEEeeCCCcccccceeeeEeeCCCCCCCCC-ceee
Q 015534 234 LTAIEDAEYKDD---KIEFWN--NVYGFDMSCIKKQA----MMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDA-SFTA 303 (405)
Q Consensus 234 ~~~~~~~~~~~~---~~~~w~--~~~g~~~~~~~~~~----~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~-~~~~ 303 (405)
++|+.++.++.+ +.+||. ..||.|++++.... +.+|.++.+++.-++..+ ....+||....++++ .+..
T Consensus 287 lAPFsDE~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPvVDtFD~RilmA~s-v~h~~dF~~~kEedlh~i~i 365 (517)
T KOG1500|consen 287 LAPFSDEQLYVEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPVVDTFDIRILMAKS-VFHVIDFLNMKEEDLHEIDI 365 (517)
T ss_pred ecccchHHHHHHHHhhhhhhhhhccccccchhhhhhhhhhhhccccccccccceeeccc-hHhhhhhhhcccchheeecc
Confidence 999998877654 457885 68999999887655 467888888776554444 456789998888887 4677
Q ss_pred eEEEEEeecceEeEEEEEEEEEEcCCCceeEEecCCCCCCCCeeeEEEecCCceecCCCCEEEEEEEEeeCCCCCceEEE
Q 015534 304 PFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDI 383 (405)
Q Consensus 304 ~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~lst~p~~~~~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~ 383 (405)
+++|.+...|.+||+++|||+.|++..-.+.++|+|..|.+||.|....|..|+.|++|++|++++.+-.+.+...+.+|
T Consensus 366 PlkF~~~~~g~iHGLAfWFDV~F~GS~~~~wlsTap~apltHwyqvrCll~~Pi~v~aGq~ltGr~~LiA~~~QSY~i~i 445 (517)
T KOG1500|consen 366 PLKFHALQCGRIHGLAFWFDVLFDGSTVQVWLSTAPTAPLTHWYQVRCLLSQPIFVKAGQTLTGRLLLIANSRQSYDITI 445 (517)
T ss_pred cceehhhhhcceeeeeeEEEEEeccceEEEccCCCCCCCcccceeeeeeccCchhhhcCCeeeeeEEEEEccccceeEEE
Confidence 88999999999999999999999986667889999999999999999999999999999999999999988877766666
Q ss_pred EEEEEEcce
Q 015534 384 MLKYSLQGR 392 (405)
Q Consensus 384 ~~~~~~~~~ 392 (405)
.++.+...+
T Consensus 446 ~l~~~~~l~ 454 (517)
T KOG1500|consen 446 TLSAKMTLQ 454 (517)
T ss_pred EEEeeeeee
Confidence 666655543
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=342.91 Aligned_cols=274 Identities=32% Similarity=0.487 Sum_probs=223.5
Q ss_pred hhHHhhcCHHhHHHHHHHHHhccCC----C----CCCEEEEEcCCCcHHHHHHHHcC-----CCeEEEEechH-HHHHHH
Q 015534 96 IHEEMLKDVVRTKSYQNVIYQNKFL----F----KDKVVLDVGAGTGILSLFCAKAG-----AAHVYAVECSQ-MANMAK 161 (405)
Q Consensus 96 ~~~~~l~d~~r~~~~~~~i~~~~~~----~----~~~~VLDiGcG~G~l~~~la~~g-----~~~V~~vD~s~-~~~~a~ 161 (405)
.+..+.+|..++..|.+||..+... . ++.+|||||||+|.|+..++++| +.+|+|||.|+ ++..++
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~ 231 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ 231 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH
T ss_pred cHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH
Confidence 4566779999999999998665321 1 35789999999999999998876 67999999999 888888
Q ss_pred HHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCceeEEEEccccc
Q 015534 162 QIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAE 241 (405)
Q Consensus 162 ~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~ 241 (405)
+++..+++.++|+++++|++++.++ +++|+||||+||+++.+| ..+.++.++.|+|||||++||+.+++|++|+.++.
T Consensus 232 ~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSElLGsfg~nE-l~pE~Lda~~rfLkp~Gi~IP~~~t~ylaPiss~~ 309 (448)
T PF05185_consen 232 KRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSELLGSFGDNE-LSPECLDAADRFLKPDGIMIPSSYTSYLAPISSPK 309 (448)
T ss_dssp HHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE---BTTBTTT-SHHHHHHHGGGGEEEEEEEESSEEEEEEEEEE-HH
T ss_pred HHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEeccCCccccc-cCHHHHHHHHhhcCCCCEEeCcchhhEEEEeeCHH
Confidence 8889999999999999999999988 899999999999999888 55567899999999999999999999999999998
Q ss_pred ccccccccccccccccchhhhhhhccCCeEEeeCCCcccccc-eeeeEeeCCCCC---CCCCceeeeEEEEEeecceEeE
Q 015534 242 YKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNC-QLLKTMDISKMG---PGDASFTAPFKLVAQRNDYIHA 317 (405)
Q Consensus 242 ~~~~~~~~w~~~~g~~~~~~~~~~~~~p~~~~~~~~~~ls~p-~~~~~~d~~~~~---~~~~~~~~~~~~~~~~~g~~~g 317 (405)
++.+...+|. ...+..|++..+.+...|+++ ..+++|++.... ..+..+...++|.+.++|.+||
T Consensus 310 l~~~~~~~~~-----------~~~~e~pyvv~~~~~~~Ls~~~~~~~~F~hp~~~~~~~~~~~r~~~~~F~i~~~g~vhG 378 (448)
T PF05185_consen 310 LYQEVRNWWN-----------PSSFETPYVVHLSPFELLSDPPQPVFTFDHPNPDLPENSDNSRSSELEFKIKRDGVVHG 378 (448)
T ss_dssp HHHHHHHHHG-----------HHHHTSSEEE--GGGGBCSCCEEEEEETTTCGGG-GGGGGSEEEEEEEEEBSSSEEEEE
T ss_pred HHHHHHhhcc-----------hhhcCCcEEEEccchhhhcCCceEEEEeccCCccccchhhhheeeeEEEeeCCCcEEEE
Confidence 7766444332 344678898888888899999 999999988766 3556788999999999999999
Q ss_pred EEEEEEEEEcCCCceeEEecCCCC----CCCCeeeEEEecCCceecCCCCEEEEEEEEeeCCCCCceEEEEEEEEEc
Q 015534 318 LVAYFDVTFTKCHKLMGFSTGPKS----RATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQ 390 (405)
Q Consensus 318 ~~~wf~~~l~~~~~~~~lst~p~~----~~~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~ 390 (405)
|++||++.|++ ++.|||+|.. +.+||+|++|||++|+.|++|++|+++++++.+. ..||++|.++
T Consensus 379 fagwFd~~Ly~---~V~LSt~P~~~~s~~~tsW~q~~fpL~~Pl~V~~g~~I~~~i~R~~~~-----~~vWYEW~v~ 447 (448)
T PF05185_consen 379 FAGWFDAVLYG---DVVLSTSPSSAHSPPMTSWFQIFFPLEEPLYVKAGDEISVHIWRKTDD-----RKVWYEWSVE 447 (448)
T ss_dssp EEEEEEEEEEC---SEEEESSTTS---TT--TTEEEEEEEEEEEEE-TT-EEEEEEEEECCS-----TCEEEEEEEE
T ss_pred EEEEEEEEeeC---CeeeecCCCcCCCCCCCeEeEEEEEecCcEEECCCCEEEEEEEEEcCC-----CcEEEEEEEe
Confidence 99999999996 6999999987 6799999999999999999999999999976553 3499999986
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-29 Score=238.93 Aligned_cols=273 Identities=23% Similarity=0.315 Sum_probs=219.3
Q ss_pred HHhhcCHHhHHHHHHHHHhccCCC-------CCCEEEEEcCCCcHHHHHHHHc---C--CCeEEEEechH-HHHHHHHHH
Q 015534 98 EEMLKDVVRTKSYQNVIYQNKFLF-------KDKVVLDVGAGTGILSLFCAKA---G--AAHVYAVECSQ-MANMAKQIV 164 (405)
Q Consensus 98 ~~~l~d~~r~~~~~~~i~~~~~~~-------~~~~VLDiGcG~G~l~~~la~~---g--~~~V~~vD~s~-~~~~a~~~~ 164 (405)
..+-+|...+..|.+||..++... .-.+|+-+|+|.|.+.....++ - -.++++||.+| ++...+. .
T Consensus 336 etFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~ 414 (649)
T KOG0822|consen 336 ETFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-R 414 (649)
T ss_pred hhhhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-h
Confidence 345567788888888876653221 1347889999999876554442 1 23899999999 7776655 4
Q ss_pred HHcCCCCcEEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCceeEEEEcccccccc
Q 015534 165 EANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKD 244 (405)
Q Consensus 165 ~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~ 244 (405)
....+.++++++..|++.+..|.++.|++|++.+|.+..+|-. +.+++.+.++|||+|+.||..++.|+.|+.+..++.
T Consensus 415 n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNELS-PECLDG~q~fLkpdgIsIP~sYtSyi~PImS~~l~q 493 (649)
T KOG0822|consen 415 NFECWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNELS-PECLDGAQKFLKPDGISIPSSYTSYIAPIMSPKLYQ 493 (649)
T ss_pred chhhhcCeeEEEeccccccCCchhhccchHHHhhccccCccCC-HHHHHHHHhhcCCCceEccchhhhhhcccccHHHHH
Confidence 4456678999999999999866689999999999998877644 578899999999999999999999999999988876
Q ss_pred cccccccccccccchhhhhhhccCCeEEeeCCCcccccceeeeEeeCCCCCC-CCCceeeeEEEEEeecceEeEEEEEEE
Q 015534 245 DKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGP-GDASFTAPFKLVAQRNDYIHALVAYFD 323 (405)
Q Consensus 245 ~~~~~w~~~~g~~~~~~~~~~~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~wf~ 323 (405)
+.... .....++.||+..+.+...|++|+.+++|....... -+-.+....+|.+..+|.+|||++|||
T Consensus 494 ~v~a~-----------~~~~~fe~~YVV~l~~~~~La~~q~vftF~HPN~~~nv~N~R~~s~eF~~~~~~~lHGFaGYFd 562 (649)
T KOG0822|consen 494 EVKAT-----------NDPNAFEAPYVVLLHNYCILAEPQPVFTFEHPNFDFNVDNSRSKSVEFKVKSNGVLHGFAGYFD 562 (649)
T ss_pred HHHhc-----------CCccccccceEEEecceeecCCCCceeEEecCCcccccccccceeEEEecCCCceEeecchhhh
Confidence 53321 001346789999999999999999999998765421 223466788999999999999999999
Q ss_pred EEEcCCCceeEEecCCCCCC---CCeeeEEEecCCceecCCCCEEEEEEEEeeCCCCCceEEEEEEEEEcc
Q 015534 324 VTFTKCHKLMGFSTGPKSRA---THWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQG 391 (405)
Q Consensus 324 ~~l~~~~~~~~lst~p~~~~---~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~ 391 (405)
+.|+. +|.||+.|...+ .+|++++||+++|+.|.+|++|+++++...+ ...||++|.++.
T Consensus 563 ~~LYk---dI~LSI~P~T~TP~MfSWFPi~fPlk~Pi~v~e~~~lsv~~wR~~d-----~~kVWYEW~v~~ 625 (649)
T KOG0822|consen 563 AVLYK---DIFLSIEPNTHTPGMFSWFPIFFPLKQPITVREGSTLSVHFWRCVD-----STKVWYEWSVES 625 (649)
T ss_pred hhhhh---eeeEeeccCCCCCCceeeeeeeeeccCceEeCCCCeEEEEEEEEeC-----CceeEEEEEeee
Confidence 99997 899999998644 6999999999999999999999999997653 466999999984
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=200.02 Aligned_cols=290 Identities=18% Similarity=0.225 Sum_probs=202.9
Q ss_pred hhHHhhcCHHhHHHHHHHHHhccCC------------------------------C---CCCEEEEEcCCCcHHHHHHHH
Q 015534 96 IHEEMLKDVVRTKSYQNVIYQNKFL------------------------------F---KDKVVLDVGAGTGILSLFCAK 142 (405)
Q Consensus 96 ~~~~~l~d~~r~~~~~~~i~~~~~~------------------------------~---~~~~VLDiGcG~G~l~~~la~ 142 (405)
.+..+-+|...++.|.++|...+.. . ....|+-+|+|.|.|...+.+
T Consensus 641 TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraLr 720 (1072)
T PTZ00357 641 VYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECLH 720 (1072)
T ss_pred hHHHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHHH
Confidence 3344667888888888877655410 0 113689999999977554444
Q ss_pred ----cCC-CeEEEEechH-HHHHHHHHH-HHcCC-------CCcEEEEEcccccccCCC-----------CceeEEEEcc
Q 015534 143 ----AGA-AHVYAVECSQ-MANMAKQIV-EANGF-------SNVITVLKGKIEEIELPV-----------TKVDIIISEW 197 (405)
Q Consensus 143 ----~g~-~~V~~vD~s~-~~~~a~~~~-~~~~~-------~~~i~~~~~d~~~~~~~~-----------~~~D~Iv~~~ 197 (405)
.|. .+|++||.++ .+.....+. ....+ .++|+++..|+..+..+. +++|+||+|+
T Consensus 721 Aak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSEL 800 (1072)
T PTZ00357 721 AVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSEL 800 (1072)
T ss_pred HHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehHhh
Confidence 332 3899999996 554444432 33344 346999999999986431 3799999999
Q ss_pred ccccccChhhHHHHHHHHHhcccC----Cc-------EEEecCceeEEEEcccccccccccccccccccccch---h--h
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVD----DG-------IVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMS---C--I 261 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~Lkp----gG-------~lip~~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~---~--~ 261 (405)
+|.|..+|-. +.+|+.+.+.||+ +| +.||+.++.|+.|+.+..++...... ...|+-.. + .
T Consensus 801 LGSFGDNELS-PECLDGaQrfLKdiqhsdGIl~~ph~ISIPqSYTSYIAPISSpKLya~V~~~--~~~gltvP~p~c~~~ 877 (1072)
T PTZ00357 801 LGSLGDNELS-PECLEAFHAQLEDIQLSRGIAFNPHLMCIPQQYTAWVAPLMSATFDAAVTEA--AVKGLTVPPPGCHDH 877 (1072)
T ss_pred hcccccccCC-HHHHHHHHHhhhhhccccccccCCcceecchhhhhhccccccHHHHHHHHHh--hhcccccCCcccccc
Confidence 9998888754 5677888888875 55 58999999999999998876552210 01111110 0 0
Q ss_pred hhhhccCCeEEeeCCCcccccceeeeEeeCCCCCCC-----------------CCceeeeEEEEEeecceEeEEEEEEEE
Q 015534 262 KKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPG-----------------DASFTAPFKLVAQRNDYIHALVAYFDV 324 (405)
Q Consensus 262 ~~~~~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~~-----------------~~~~~~~~~~~~~~~g~~~g~~~wf~~ 324 (405)
....+..+|+..+.....|+.|+++++|........ +..+...+.|.+..++.+|||++||++
T Consensus 878 haa~fet~YVV~L~s~~~La~PQPcFTFeHPn~~~s~n~y~~~~g~~~~~~~i~N~Rya~L~F~v~~d~vlHGFAGYFdA 957 (1072)
T PTZ00357 878 HAALNHTLLVTNLSRAVTLAPPQPCWTFEHRFHGGSDNDYKGDRGAMKRREPVSLERAASLLFEVPPCGRCCGLAGYFSA 957 (1072)
T ss_pred chhhcccceEEEecceeecCCCcceeEEECCCcccccccccccccccccccccccceeEEEEEecCCCcceeeeeeEEEE
Confidence 112245678888888888899999999988654321 124678889999999999999999999
Q ss_pred EEcCCC--ceeEEecCCCCCC---CCeeeEEEecC---CceecCCCC---------EEEEEEEEeeCCCCCceEEEEEEE
Q 015534 325 TFTKCH--KLMGFSTGPKSRA---THWKQTVLYLE---DVLTICEGE---------AISGSLTVAPNKKNPRDVDIMLKY 387 (405)
Q Consensus 325 ~l~~~~--~~~~lst~p~~~~---~~W~q~v~~l~---~p~~v~~g~---------~i~~~~~~~~~~~~~r~~~~~~~~ 387 (405)
.|+++. ..+.|||.|...+ -+|++.+|||+ .+..++.|+ .|.+.+..+.+-.. ..||++|
T Consensus 958 vLYkDVt~~~V~LSI~P~ThTpgMfSWFPIFFPLeP~~~~e~~~~gq~~~~~~~~~~i~~~l~Rr~~~~e---~rVwYew 1034 (1072)
T PTZ00357 958 VLYQSATAPATIIATAPVERTEDMYSWFPCVFALEPAQQAELQDVGQAAAEESRMVAIRVQLDRRTSLAE---QRVWYEW 1034 (1072)
T ss_pred EeecCCCccceEeecCCCCCCCCccceeeeEEecCccccceEeeccccccccccceeEEEeeeecccccc---ceEEEEE
Confidence 999721 1278999998644 58999999998 566677776 66666665543344 3499999
Q ss_pred EEcc
Q 015534 388 SLQG 391 (405)
Q Consensus 388 ~~~~ 391 (405)
++.-
T Consensus 1035 ~v~~ 1038 (1072)
T PTZ00357 1035 SVTY 1038 (1072)
T ss_pred EEee
Confidence 8753
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-22 Score=187.78 Aligned_cols=258 Identities=22% Similarity=0.297 Sum_probs=193.4
Q ss_pred hHHhhcCHHhHHHHHHHHHhccCCCC-----C-CEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCC
Q 015534 97 HEEMLKDVVRTKSYQNVIYQNKFLFK-----D-KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF 169 (405)
Q Consensus 97 ~~~~l~d~~r~~~~~~~i~~~~~~~~-----~-~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~ 169 (405)
+.+|++|..|+..|...|.......+ | .-|||||+|||+++++++++|+..|+|+|.-. |.+.|++...+||+
T Consensus 35 y~DMl~D~dRNiky~~gi~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~ 114 (636)
T KOG1501|consen 35 YLDMLNDSDRNIKYRLGIEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGM 114 (636)
T ss_pred HHHHhhcccccHHHHHHHHHHhcccceeccCceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCC
Confidence 45699999999999998886543222 2 26899999999999999999999999999999 99999999999999
Q ss_pred CCcEEEEEcccccccCC-CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCceeEEEEcccccccccccc
Q 015534 170 SNVITVLKGKIEEIELP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIE 248 (405)
Q Consensus 170 ~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~~~~~ 248 (405)
+++|+++....+++... ..+.|+++.+.+..-+.+++.++.+-++..+++++|...+|.++++|++++++..+..-...
T Consensus 115 SdkI~vInkrStev~vg~~~RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~~VP~ratvY~qlVES~~l~~~ndl 194 (636)
T KOG1501|consen 115 SDKINVINKRSTEVKVGGSSRADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATVYCQLVESTFLCNLNDL 194 (636)
T ss_pred ccceeeeccccceeeecCcchhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCeeccccceEEEEEehhhhhhhhhcc
Confidence 99999999999988754 34699999998888888999999999999999999999999999999999998755431110
Q ss_pred c---ccccccccc--hhhhhhhc-----cCCeEEee-CCCcccccceeeeEeeCCCCCCCCCceeeeEEEEEeecceEeE
Q 015534 249 F---WNNVYGFDM--SCIKKQAM-----MEPLVDTV-DQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHA 317 (405)
Q Consensus 249 ~---w~~~~g~~~--~~~~~~~~-----~~p~~~~~-~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g 317 (405)
+ -....|..+ ..+....- ...+.+.. ...++|+++..+|.+||.............+....-.+|++..
T Consensus 195 ~~~~~~ts~gv~~~p~~lesc~G~~sv~d~ql~~~~~~ef~~Ls~~~~~F~~df~~~~~s~s~~~~~r~~va~~Sg~~~~ 274 (636)
T KOG1501|consen 195 RNNEAKTSDGVRLVPPGLESCFGIKSVQDSQLVDAIEKEFKLLSSEGTIFYSDFPRWIDSNSEIEELRPPVAVHSGPLRS 274 (636)
T ss_pred ccccccccCCcccCCCccccCCCchhHHHHHHhhcchhhheeecCcceeEEeecchhhhcchhhhhhcCcccccccchhh
Confidence 0 001112111 00000000 00011111 2347899999999999984322211112234556678999999
Q ss_pred EEEEEEEEEcCCCceeEEecCCCCCC---------CCeeeEEEecCC
Q 015534 318 LVAYFDVTFTKCHKLMGFSTGPKSRA---------THWKQTVLYLED 355 (405)
Q Consensus 318 ~~~wf~~~l~~~~~~~~lst~p~~~~---------~~W~q~v~~l~~ 355 (405)
+..||+.+++. .+...+..+|.+.. .||.|++.++++
T Consensus 275 ~l~wwdi~mD~-~g~~f~~m~p~w~~~~~~~~~~~~~weq~c~y~~~ 320 (636)
T KOG1501|consen 275 NLLWWDISMDQ-FGFSFLVMQPLWTGVTIGNSVFGLLWEQACPYPKE 320 (636)
T ss_pred eeeeeeeeecc-CcceEEEecceecCCChHHHHHHHHHHHhcCCChh
Confidence 99999999995 55677888887532 599999999884
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-20 Score=167.05 Aligned_cols=154 Identities=22% Similarity=0.272 Sum_probs=124.5
Q ss_pred ccCCCCCcCCCCCCCccccccccccCchhhhHHhhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCC
Q 015534 67 MCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAA 146 (405)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~ 146 (405)
+.++++.++++|+.++ ..||+..+.+..-..+ +..|...+...+.. ....+|.+|||||||.|+++..+|+.|+
T Consensus 9 ~~~id~~e~~~F~~la--~~wwd~~g~f~~LH~~--N~~rl~~i~~~~~~-~~~l~g~~vLDvGCGgG~Lse~mAr~Ga- 82 (243)
T COG2227 9 TQNVDYKELDKFEALA--SRWWDPEGEFKPLHKI--NPLRLDYIREVARL-RFDLPGLRVLDVGCGGGILSEPLARLGA- 82 (243)
T ss_pred cccCCHHHHHHHHHHH--hhhcCCCCceeeeeee--ccchhhhhhhhhhc-ccCCCCCeEEEecCCccHhhHHHHHCCC-
Confidence 4567888899999998 8999988887644433 33333333322221 1226899999999999999999999985
Q ss_pred eEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEE
Q 015534 147 HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIV 225 (405)
Q Consensus 147 ~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 225 (405)
.|+|+|+++ +++.|+.+...+++. +++....++++....++||+|+|. ..+.|.+++..++.++.+++||||.+
T Consensus 83 ~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~cm---EVlEHv~dp~~~~~~c~~lvkP~G~l 157 (243)
T COG2227 83 SVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAGGQFDVVTCM---EVLEHVPDPESFLRACAKLVKPGGIL 157 (243)
T ss_pred eeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcCCCccEEEEh---hHHHccCCHHHHHHHHHHHcCCCcEE
Confidence 999999999 999999999999975 889999999998666899999993 44667788999999999999999999
Q ss_pred EecCce
Q 015534 226 LPDKAS 231 (405)
Q Consensus 226 ip~~~~ 231 (405)
+.++..
T Consensus 158 f~STin 163 (243)
T COG2227 158 FLSTIN 163 (243)
T ss_pred EEeccc
Confidence 987654
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9e-19 Score=158.03 Aligned_cols=114 Identities=23% Similarity=0.341 Sum_probs=101.2
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (405)
.|.+.+.......+|.+|||||||||.+++.+++ .|..+|+|+|+|+ |++.|++++...+..+ ++|+++|+++++++
T Consensus 38 ~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~ 116 (238)
T COG2226 38 LWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFP 116 (238)
T ss_pred HHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCCC
Confidence 4555555555556899999999999999999999 5678999999999 9999999999988876 99999999999999
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
+++||+|.+ .+.+.+..+++.+++++.|+|||||+++
T Consensus 117 D~sFD~vt~---~fglrnv~d~~~aL~E~~RVlKpgG~~~ 153 (238)
T COG2226 117 DNSFDAVTI---SFGLRNVTDIDKALKEMYRVLKPGGRLL 153 (238)
T ss_pred CCccCEEEe---eehhhcCCCHHHHHHHHHHhhcCCeEEE
Confidence 999999998 5667777899999999999999999876
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-18 Score=165.81 Aligned_cols=154 Identities=16% Similarity=0.181 Sum_probs=121.7
Q ss_pred cCCCCCcCCCCCCCccccccccccCchhhhHHhhcCHHhHHHHHHHHHhcc-------CCCCCCEEEEEcCCCcHHHHHH
Q 015534 68 CDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNK-------FLFKDKVVLDVGAGTGILSLFC 140 (405)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~-------~~~~~~~VLDiGcG~G~l~~~l 140 (405)
..++.+++.+|+.++ +.||+..+.+..+..| +..|...+.+.+.+.. ...++.+|||||||+|.++..+
T Consensus 74 ~s~~~~e~~~f~~~a--~~WW~~~g~~~~lh~~--N~~R~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~L 149 (322)
T PLN02396 74 TSLNEDELAKFSAIA--DTWWHSEGPFKPLHQM--NPTRLAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPL 149 (322)
T ss_pred CCCCHHHHHHHHHHH--HHhcCCCCCchHHHHh--ChHHHHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHH
Confidence 467888899999888 5899998887765555 3444444444443221 1246779999999999999999
Q ss_pred HHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcc
Q 015534 141 AKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 219 (405)
Q Consensus 141 a~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~L 219 (405)
++.|+ +|+|+|+++ +++.|+++....+...+++++++|+++++++.++||+|++..+ +.|..++..++..+.++|
T Consensus 150 a~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v---LeHv~d~~~~L~~l~r~L 225 (322)
T PLN02396 150 ARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV---IEHVANPAEFCKSLSALT 225 (322)
T ss_pred HHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH---HHhcCCHHHHHHHHHHHc
Confidence 99865 999999999 9999999877666556799999999998776689999999544 445567789999999999
Q ss_pred cCCcEEEecC
Q 015534 220 VDDGIVLPDK 229 (405)
Q Consensus 220 kpgG~lip~~ 229 (405)
||||.++...
T Consensus 226 kPGG~liist 235 (322)
T PLN02396 226 IPNGATVLST 235 (322)
T ss_pred CCCcEEEEEE
Confidence 9999998654
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=135.42 Aligned_cols=106 Identities=28% Similarity=0.348 Sum_probs=88.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccc-ccccCCCCceeEEEEcc-
Q 015534 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI-EEIELPVTKVDIIISEW- 197 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~Iv~~~- 197 (405)
|+.+|||||||+|.++..+++ .+..+|+|+|+|+ |++.|++++...+..++++++++|+ ...... ++||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCC
Confidence 578999999999999999999 4566999999999 9999999998888889999999999 444443 7899999976
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
....+.+......+++.+.+.|+|||+++..
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 2332333356778899999999999999864
|
... |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-18 Score=154.06 Aligned_cols=152 Identities=18% Similarity=0.177 Sum_probs=119.3
Q ss_pred ccCCCCCcCCCCCCCccccccccccCchhhhHHhhcCHHhHHHHHHHHHhccC-CCC------CCEEEEEcCCCcHHHHH
Q 015534 67 MCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKF-LFK------DKVVLDVGAGTGILSLF 139 (405)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~~-~~~------~~~VLDiGcG~G~l~~~ 139 (405)
+..++..|+.+|..++ ..||+.-+.+.....| +..|.....+-+..... ..| |++|||+|||+|+++..
T Consensus 31 ~~si~~~eV~~f~~la--~~wwd~~g~~~~Lh~m--n~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSep 106 (282)
T KOG1270|consen 31 TTSIDVDEVKKFQALA--FTWWDEEGVRHPLHSM--NQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEP 106 (282)
T ss_pred eecccHHHHHHHHHhc--ccccccccchhhhhhc--cchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchh
Confidence 3345556788888887 8899998877665556 55666666666665542 233 47899999999999999
Q ss_pred HHHcCCCeEEEEechH-HHHHHHHHHHHcCCCC-----cEEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHH
Q 015534 140 CAKAGAAHVYAVECSQ-MANMAKQIVEANGFSN-----VITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLY 213 (405)
Q Consensus 140 la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~-----~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~ 213 (405)
||+.|+ .|+|+|+++ |++.|+++...+...+ ++++.+.+++.+. ++||+|+|..+ +.|..+++.++.
T Consensus 107 LArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcsev---leHV~dp~~~l~ 179 (282)
T KOG1270|consen 107 LARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSEV---LEHVKDPQEFLN 179 (282)
T ss_pred hHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeHHH---HHHHhCHHHHHH
Confidence 999986 999999999 9999999965554433 3778888888775 56999999544 667789999999
Q ss_pred HHHhcccCCcEEEecC
Q 015534 214 ARDKWLVDDGIVLPDK 229 (405)
Q Consensus 214 ~~~~~LkpgG~lip~~ 229 (405)
.+.++|||||.++..+
T Consensus 180 ~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 180 CLSALLKPNGRLFITT 195 (282)
T ss_pred HHHHHhCCCCceEeee
Confidence 9999999999988654
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-17 Score=152.29 Aligned_cols=106 Identities=24% Similarity=0.277 Sum_probs=80.1
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 194 (405)
....+|.+|||+|||||.++..+++. + ..+|+|+|+|+ |++.|+++....+.. +|+++++|++++++++++||+|+
T Consensus 43 ~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d~sfD~v~ 121 (233)
T PF01209_consen 43 LGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFPDNSFDAVT 121 (233)
T ss_dssp HT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEE
T ss_pred cCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCCCceeEEE
Confidence 45678889999999999999999884 3 35999999999 999999999998875 79999999999999999999999
Q ss_pred EccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+. +.+.+..+....++++.|+|||||+++.
T Consensus 122 ~~---fglrn~~d~~~~l~E~~RVLkPGG~l~i 151 (233)
T PF01209_consen 122 CS---FGLRNFPDRERALREMYRVLKPGGRLVI 151 (233)
T ss_dssp EE---S-GGG-SSHHHHHHHHHHHEEEEEEEEE
T ss_pred HH---hhHHhhCCHHHHHHHHHHHcCCCeEEEE
Confidence 84 4455557788999999999999999874
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-15 Score=141.23 Aligned_cols=116 Identities=16% Similarity=0.096 Sum_probs=92.0
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHH--cCCCCcEEEEEccccccc
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEA--NGFSNVITVLKGKIEEIE 184 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~--~~~~~~i~~~~~d~~~~~ 184 (405)
+.+.+.+.....++.+|||||||+|.++..+++. | ..+|+|+|+|+ |++.|+++... .....+++++++|+++++
T Consensus 61 ~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp 140 (261)
T PLN02233 61 WKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP 140 (261)
T ss_pred HHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC
Confidence 3333333345667889999999999999999884 4 35999999999 99999877542 222246999999999999
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+++++||+|++... +++..++..++.++.|+|||||.++..
T Consensus 141 ~~~~sfD~V~~~~~---l~~~~d~~~~l~ei~rvLkpGG~l~i~ 181 (261)
T PLN02233 141 FDDCYFDAITMGYG---LRNVVDRLKAMQEMYRVLKPGSRVSIL 181 (261)
T ss_pred CCCCCEeEEEEecc---cccCCCHHHHHHHHHHHcCcCcEEEEE
Confidence 88889999998543 444467889999999999999998754
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.6e-16 Score=120.20 Aligned_cols=94 Identities=26% Similarity=0.394 Sum_probs=79.4
Q ss_pred EEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccccccCh
Q 015534 127 LDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFE 205 (405)
Q Consensus 127 LDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~ 205 (405)
||+|||+|..+..+++.+..+|+++|+++ +++.++++....+ +.++.+|++++++++++||+|++..+.+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~----~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG----VSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST----EEEEESBTTSSSS-TT-EEEEEEESHGGGS---
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC----chheeehHHhCccccccccccccccceeec---
Confidence 89999999999999999667999999999 9999999876543 669999999999999999999997654444
Q ss_pred hhHHHHHHHHHhcccCCcEEEe
Q 015534 206 NMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 206 ~~~~~~l~~~~~~LkpgG~lip 227 (405)
.....+++++.|+|||||++++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 7888999999999999999874
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-15 Score=132.25 Aligned_cols=100 Identities=25% Similarity=0.293 Sum_probs=86.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
..++.+|||||||+|..++.+++ .+..+|+++|+++ |++.|+++++.+++++ ++++.+|+.++.. .++||+|+++.
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~-~~~fDlV~~~~ 120 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ-EEKFDVVTSRA 120 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC-CCCccEEEEcc
Confidence 34588999999999999999987 4567999999999 9999999999999865 9999999999876 57999999864
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+ ..++.++..+.++|+|||++++.
T Consensus 121 ~-------~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 121 V-------ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred c-------cCHHHHHHHHHHhcCCCeEEEEE
Confidence 2 35678899999999999998853
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-15 Score=134.01 Aligned_cols=103 Identities=20% Similarity=0.252 Sum_probs=88.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
..++.+|||+|||+|.++..+++.|. +|+|+|+|+ |++.|+++....++. +++++..|+.+++++ ++||+|++..+
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~I~~~~~ 104 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLTFD-GEYDFILSTVV 104 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCCcC-CCcCEEEEecc
Confidence 45678999999999999999999876 999999999 999999999988884 489999999887765 78999999765
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
.+++ .......++..+.++|+|||.++
T Consensus 105 ~~~~-~~~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 105 LMFL-EAKTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred hhhC-CHHHHHHHHHHHHHHcCCCcEEE
Confidence 4443 44567899999999999999965
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-15 Score=145.06 Aligned_cols=105 Identities=18% Similarity=0.145 Sum_probs=91.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
.++.+|||||||+|.++..+++....+|+|+|+|+ |++.|+++....++.++++++.+|+.++++++++||+|++...
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~- 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES- 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc-
Confidence 57789999999999999999995344999999999 9999999999998888899999999999888889999999544
Q ss_pred ccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+.+..+...++.++.++|||||.++..
T Consensus 196 --~~h~~d~~~~l~e~~rvLkpGG~lvi~ 222 (340)
T PLN02244 196 --GEHMPDKRKFVQELARVAAPGGRIIIV 222 (340)
T ss_pred --hhccCCHHHHHHHHHHHcCCCcEEEEE
Confidence 333356778999999999999998864
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-15 Score=131.08 Aligned_cols=104 Identities=24% Similarity=0.346 Sum_probs=86.5
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
...++.++||||||.|..+++||+.|. .|+|+|.|+ .++.+++.+...+++ |+....|+.+..++ +.||+|++..
T Consensus 27 ~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~-~~yD~I~st~ 102 (192)
T PF03848_consen 27 PLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFP-EEYDFIVSTV 102 (192)
T ss_dssp TTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-T-TTEEEEEEES
T ss_pred hhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcccc-CCcCEEEEEE
Confidence 345677999999999999999999998 999999999 999999999999985 99999999998876 7899999976
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+..++ ..+..+.++..+...++|||+++.
T Consensus 103 v~~fL-~~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 103 VFMFL-QRELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp SGGGS--GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred EeccC-CHHHHHHHHHHHHhhcCCcEEEEE
Confidence 66655 456778999999999999999774
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-15 Score=129.03 Aligned_cols=104 Identities=31% Similarity=0.379 Sum_probs=88.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHH-Hc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCA-KA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIIS 195 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la-~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~ 195 (405)
..+.+|||+|||+|.++..++ +. +..+|+|+|+|+ |++.|++++...+++ +++|+++|+.+++ ++ ++||+|++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~-~~~D~I~~ 79 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELE-EKFDIIIS 79 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSS-TTEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccC-CCeeEEEE
Confidence 357899999999999999999 43 356999999999 999999999999996 7999999999976 55 79999999
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
..+. .+......++..+.++|++||.++...
T Consensus 80 ~~~l---~~~~~~~~~l~~~~~~lk~~G~~i~~~ 110 (152)
T PF13847_consen 80 NGVL---HHFPDPEKVLKNIIRLLKPGGILIISD 110 (152)
T ss_dssp ESTG---GGTSHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCch---hhccCHHHHHHHHHHHcCCCcEEEEEE
Confidence 7553 444677889999999999999998644
|
... |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-15 Score=134.33 Aligned_cols=103 Identities=19% Similarity=0.178 Sum_probs=86.0
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
...++.+|||+|||+|.++..+++.|. +|+|+|+|+ |++.++++...+++. +.+...|+...+++ ++||+|++..
T Consensus 27 ~~~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~-~~fD~I~~~~ 102 (195)
T TIGR00477 27 KTVAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALN-EDYDFIFSTV 102 (195)
T ss_pred ccCCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhcccc-CCCCEEEEec
Confidence 344567999999999999999999876 999999999 999999999888874 78888888766655 6899999976
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
+.+++ +......++..+.++|+|||+++
T Consensus 103 ~~~~~-~~~~~~~~l~~~~~~LkpgG~ll 130 (195)
T TIGR00477 103 VFMFL-QAGRVPEIIANMQAHTRPGGYNL 130 (195)
T ss_pred ccccC-CHHHHHHHHHHHHHHhCCCcEEE
Confidence 54433 34577889999999999999865
|
Part of a tellurite-reducing operon tehA and tehB |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.5e-15 Score=134.55 Aligned_cols=115 Identities=21% Similarity=0.248 Sum_probs=95.0
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (405)
.+.+.+.......++.+|||+|||+|.++..+++. + ..+|+|+|+++ +++.|++++...++ ++++++.+|+.++++
T Consensus 32 ~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~ 110 (231)
T TIGR02752 32 KWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPF 110 (231)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCC
Confidence 44445555566678899999999999999999884 3 45999999999 99999999988777 569999999998887
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+.++||+|++... +.+......++..+.++|+|||+++.
T Consensus 111 ~~~~fD~V~~~~~---l~~~~~~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 111 DDNSFDYVTIGFG---LRNVPDYMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred CCCCccEEEEecc---cccCCCHHHHHHHHHHHcCcCeEEEE
Confidence 7789999998543 34445677899999999999999874
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.2e-15 Score=136.60 Aligned_cols=115 Identities=21% Similarity=0.270 Sum_probs=89.4
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (405)
-.+.+.+...+.+|.+|||||||.|.+++.+++. |+ +|+|+.+|+ ..+.|++.+...|+++++++...|..+++
T Consensus 50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--- 125 (273)
T PF02353_consen 50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--- 125 (273)
T ss_dssp HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---
Confidence 3445666678899999999999999999999996 76 999999999 99999999999999999999999998875
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
.+||.|++-.+..++ +....+.++..+.++|||||+++.+.
T Consensus 126 ~~fD~IvSi~~~Ehv-g~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 126 GKFDRIVSIEMFEHV-GRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp -S-SEEEEESEGGGT-CGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred CCCCEEEEEechhhc-ChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 489999996554433 34678899999999999999998653
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.4e-15 Score=139.77 Aligned_cols=110 Identities=27% Similarity=0.386 Sum_probs=85.5
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (405)
+....++|... ..++.+|||+|||||+|++.+++.|+++|+|+|++| +++.|++++..|++.+++.+. ...+ .
T Consensus 148 T~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~--~ 221 (295)
T PF06325_consen 148 TRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSED--L 221 (295)
T ss_dssp HHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSC--T
T ss_pred HHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eecc--c
Confidence 44555566543 567889999999999999999999999999999999 999999999999999877663 2222 2
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
..++||+|++|.+. ..+..++..+.++|+|||.+|.+
T Consensus 222 ~~~~~dlvvANI~~------~vL~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 222 VEGKFDLVVANILA------DVLLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp CCS-EEEEEEES-H------HHHHHHHHHCHHHEEEEEEEEEE
T ss_pred ccccCCEEEECCCH------HHHHHHHHHHHHhhCCCCEEEEc
Confidence 23899999999763 34456777888999999999953
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.7e-15 Score=135.24 Aligned_cols=116 Identities=21% Similarity=0.211 Sum_probs=99.7
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (405)
-.+.+.....+.+|.+|||||||-|.+++.+|+.-..+|+|+++|+ +.+.+++++...|+.++++++..|..++. +
T Consensus 60 k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e 136 (283)
T COG2230 60 KLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---E 136 (283)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---c
Confidence 3455666788999999999999999999999996345999999999 99999999999999989999999999886 5
Q ss_pred ceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+||-|||-.|..++ +....+.++..+.++|+|||.++...
T Consensus 137 ~fDrIvSvgmfEhv-g~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 137 PFDRIVSVGMFEHV-GKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred ccceeeehhhHHHh-CcccHHHHHHHHHhhcCCCceEEEEE
Confidence 59999996654444 33568899999999999999988543
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.1e-15 Score=137.14 Aligned_cols=113 Identities=25% Similarity=0.319 Sum_probs=88.4
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (405)
+....+++.+. ..++.+|||+|||+|.+++.+++.|+++|+|+|++| .++.|++++..|++...++....+......
T Consensus 149 T~lcL~~Le~~--~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~ 226 (300)
T COG2264 149 TSLCLEALEKL--LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPE 226 (300)
T ss_pred HHHHHHHHHHh--hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcc
Confidence 44455556543 458999999999999999999999999999999999 999999999999987533333333333322
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.++||+||+|.+. ..+..+...+.++|||||++|.+
T Consensus 227 -~~~~DvIVANILA------~vl~~La~~~~~~lkpgg~lIlS 262 (300)
T COG2264 227 -NGPFDVIVANILA------EVLVELAPDIKRLLKPGGRLILS 262 (300)
T ss_pred -cCcccEEEehhhH------HHHHHHHHHHHHHcCCCceEEEE
Confidence 3699999998753 34457788889999999999954
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.2e-15 Score=136.67 Aligned_cols=103 Identities=26% Similarity=0.256 Sum_probs=88.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEEEccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWM 198 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Iv~~~~ 198 (405)
.++.+|||+|||+|.++..+++.|. +|+|+|+|+ |++.|++++...++.++++++++|+.++. .+.++||+|++..+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 4567999999999999999999865 999999999 99999999999988778999999998874 44579999999655
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.+++ ..+..++..+.++|||||+++.
T Consensus 122 l~~~---~~~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 122 LEWV---ADPKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred HHhh---CCHHHHHHHHHHHcCCCeEEEE
Confidence 3333 4567889999999999999874
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=127.09 Aligned_cols=99 Identities=21% Similarity=0.339 Sum_probs=83.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
.++.+|||+|||+|.++..++..+ ..+|+|+|.|+ |++.++++++.+++. +++++++|+.++.. .++||+|+++.+
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~~-~~~fD~I~s~~~ 118 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQH-EEQFDVITSRAL 118 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhccc-cCCccEEEehhh
Confidence 357899999999999999988753 56899999999 999999999999885 59999999998743 479999998642
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
..++.++..+.++|+|||.++..
T Consensus 119 -------~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 119 -------ASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred -------hCHHHHHHHHHHhcCCCCEEEEE
Confidence 24566778889999999998853
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.2e-14 Score=127.31 Aligned_cols=115 Identities=16% Similarity=0.178 Sum_probs=99.7
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH-cCC------CeEEEEechH-HHHHHHHHHHHcCCCCc--EEEEEc
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGA------AHVYAVECSQ-MANMAKQIVEANGFSNV--ITVLKG 178 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g~------~~V~~vD~s~-~~~~a~~~~~~~~~~~~--i~~~~~ 178 (405)
.|.+.....+...++.+|||++||||-++..+.+ .+. .+|+.+|+|+ |++.++++..+.++... +.++.+
T Consensus 87 lWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~ 166 (296)
T KOG1540|consen 87 LWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEG 166 (296)
T ss_pred HHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeC
Confidence 3556666667778889999999999999999988 344 6999999999 99999999988777654 999999
Q ss_pred ccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 179 KIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 179 d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
|++++++++.+||+.++ .+.+.+-.++++.+++++|+|||||++.
T Consensus 167 dAE~LpFdd~s~D~yTi---afGIRN~th~~k~l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 167 DAEDLPFDDDSFDAYTI---AFGIRNVTHIQKALREAYRVLKPGGRFS 211 (296)
T ss_pred CcccCCCCCCcceeEEE---ecceecCCCHHHHHHHHHHhcCCCcEEE
Confidence 99999999999999997 4556677788999999999999999876
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=122.99 Aligned_cols=135 Identities=26% Similarity=0.403 Sum_probs=117.2
Q ss_pred hhhHHhhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcE
Q 015534 95 GIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVI 173 (405)
Q Consensus 95 ~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i 173 (405)
.||.+++.|..|...|..+|.+.. ...+.|+|+|+|.+++.++++ +.+|+|+|.+| ..+.|.+++.-+|. +++
T Consensus 9 ~yh~~LL~D~eRlavF~~ai~~va----~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~-~n~ 82 (252)
T COG4076 9 SYHLDLLRDVERLAVFTSAIAEVA----EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGD-VNW 82 (252)
T ss_pred hhHhhhhhhHHHHHHHHHHHHHHh----hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCC-cce
Confidence 578889999999999999998653 368999999999999999998 88999999999 99999999888887 569
Q ss_pred EEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCceeEEEEcc
Q 015534 174 TVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIE 238 (405)
Q Consensus 174 ~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~ 238 (405)
+++.+|+.+..+ +..|+|+|++++..|..++..+ ++.++..+|+-++.+||+....-+.|+.
T Consensus 83 evv~gDA~~y~f--e~ADvvicEmlDTaLi~E~qVp-V~n~vleFLr~d~tiiPq~v~~~a~pv~ 144 (252)
T COG4076 83 EVVVGDARDYDF--ENADVVICEMLDTALIEEKQVP-VINAVLEFLRYDPTIIPQEVRIGANPVR 144 (252)
T ss_pred EEEecccccccc--cccceeHHHHhhHHhhcccccH-HHHHHHHHhhcCCccccHHHhhccCccc
Confidence 999999999988 6899999999888888777764 4555667999999999998776666654
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-14 Score=136.23 Aligned_cols=114 Identities=16% Similarity=0.124 Sum_probs=89.3
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015534 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (405)
Q Consensus 112 ~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (405)
.++.......++++|||||||+|.++..++..|+..|+|+|+|+ |+..++..-...+...++.+...++++++.. .+|
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~F 189 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAF 189 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCc
Confidence 33444455678899999999999999999998888999999999 9877644333222224688999999988754 689
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
|+|+|..+.+ |..++..++.++++.|+|||.++...
T Consensus 190 D~V~s~gvL~---H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 190 DTVFSMGVLY---HRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred CEEEEcchhh---ccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 9999966533 44677889999999999999998653
|
Known examples to date are restricted to the proteobacteria. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-14 Score=137.39 Aligned_cols=110 Identities=23% Similarity=0.210 Sum_probs=89.2
Q ss_pred HhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEE
Q 015534 115 YQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193 (405)
Q Consensus 115 ~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~I 193 (405)
.......++++|||||||+|.++..+++.|+..|+|+|+|+ ++..++......+...+++++.+|++++++ .++||+|
T Consensus 115 ~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V 193 (322)
T PRK15068 115 LPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTV 193 (322)
T ss_pred HHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEE
Confidence 33344567899999999999999999998888899999999 987665544333333569999999999987 5899999
Q ss_pred EEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+|..+ +.|..++..++..+++.|+|||.++..
T Consensus 194 ~s~~v---l~H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 194 FSMGV---LYHRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred EECCh---hhccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 99654 344467788999999999999999875
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-14 Score=136.67 Aligned_cols=101 Identities=25% Similarity=0.281 Sum_probs=86.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
.++.+|||+|||+|..+..+++.|. +|+|+|+|+ +++.+++++..+++ ++++...|+....++ ++||+|++..+.
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~-~~fD~I~~~~vl 194 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQ-EEYDFILSTVVL 194 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhccccc-CCccEEEEcchh
Confidence 3456999999999999999999875 999999999 99999999998887 489999998876664 899999998765
Q ss_pred ccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
+++ +....+.++..+.++|+|||+++
T Consensus 195 ~~l-~~~~~~~~l~~~~~~LkpgG~~l 220 (287)
T PRK12335 195 MFL-NRERIPAIIKNMQEHTNPGGYNL 220 (287)
T ss_pred hhC-CHHHHHHHHHHHHHhcCCCcEEE
Confidence 544 34577899999999999999965
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.9e-14 Score=121.90 Aligned_cols=112 Identities=27% Similarity=0.317 Sum_probs=88.2
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCC-eEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAA-HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~-~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (405)
.+.+.+... ++.+|||+|||+|.+++.+++.+.. +|+++|+++ +++.|++++..+++.+ ++++..|..+...
T Consensus 22 lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~- 95 (170)
T PF05175_consen 22 LLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP- 95 (170)
T ss_dssp HHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC-
T ss_pred HHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc-
Confidence 444444432 6789999999999999999997554 799999999 9999999999999977 9999999876543
Q ss_pred CCceeEEEEccccccccC--hhhHHHHHHHHHhcccCCcEEE
Q 015534 187 VTKVDIIISEWMGYFLLF--ENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~--~~~~~~~l~~~~~~LkpgG~li 226 (405)
.++||+|++++..+.... ......++....++|+|||.++
T Consensus 96 ~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~ 137 (170)
T PF05175_consen 96 DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLF 137 (170)
T ss_dssp TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEE
Confidence 489999999975322211 1246788999999999999986
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.1e-14 Score=131.72 Aligned_cols=107 Identities=17% Similarity=0.280 Sum_probs=89.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc---CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKA---GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~---g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (405)
..++.+|||||||+|.++..+++. +..+|+|+|+|+ |++.|++++...+...+++++++|+.+++++ .+|+|++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~ 131 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVL 131 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEeh
Confidence 357789999999999999888872 346999999999 9999999999888877899999999988654 5999998
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
....+++. ......++..+.+.|||||.++...
T Consensus 132 ~~~l~~l~-~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 132 NFTLQFLE-PSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hhHHHhCC-HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 76545443 3456789999999999999998754
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.9e-14 Score=132.08 Aligned_cols=112 Identities=27% Similarity=0.293 Sum_probs=89.6
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (405)
+.......++.+|||||||+|..+..+++....+|+|+|+|+ |++.|+++... .++++++.+|+.+.++++++||+
T Consensus 44 ~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~FD~ 120 (263)
T PTZ00098 44 ILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPENTFDM 120 (263)
T ss_pred HHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCCCeEE
Confidence 334456778899999999999999998874334999999999 99999987654 25699999999988887789999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
|++.....++ .......+++.+.++|||||.++...
T Consensus 121 V~s~~~l~h~-~~~d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 121 IYSRDAILHL-SYADKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred EEEhhhHHhC-CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 9985322222 22367899999999999999998654
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-14 Score=114.91 Aligned_cols=95 Identities=23% Similarity=0.370 Sum_probs=78.3
Q ss_pred EEEEcCCCcHHHHHHHHc---C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc-ccc
Q 015534 126 VLDVGAGTGILSLFCAKA---G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE-WMG 199 (405)
Q Consensus 126 VLDiGcG~G~l~~~la~~---g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~-~~~ 199 (405)
|||+|||+|..+..+++. | ..+++|+|+|+ |++.++++....+. +++++++|+.+++...++||+|++. .+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 799999999999999986 3 26999999999 99999999988766 5899999999988766899999994 323
Q ss_pred ccccChhhHHHHHHHHHhcccCCc
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDG 223 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG 223 (405)
.+ ........+++.+.++|+|||
T Consensus 79 ~~-~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HH-LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GG-SSHHHHHHHHHHHHHTEEEEE
T ss_pred CC-CCHHHHHHHHHHHHHHhCCCC
Confidence 33 566788999999999999998
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.4e-14 Score=115.76 Aligned_cols=105 Identities=25% Similarity=0.356 Sum_probs=86.6
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEcccc
Q 015534 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEWMG 199 (405)
Q Consensus 123 ~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~~~~ 199 (405)
|.+|||+|||+|.++..+++.+..+++|+|+++ .++.|+.++..+++.++++++++|+.+.. ++.++||+|++++..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 568999999999999999998767999999999 99999999999999888999999999886 667999999998743
Q ss_pred ccccC-----hhhHHHHHHHHHhcccCCcEEEe
Q 015534 200 YFLLF-----ENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 200 ~~l~~-----~~~~~~~l~~~~~~LkpgG~lip 227 (405)
..... ......+++.+.++|+|||.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 21110 12346889999999999999874
|
... |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=3e-14 Score=123.23 Aligned_cols=106 Identities=19% Similarity=0.188 Sum_probs=84.2
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
....-.++||+|||.|.++..||.. ..+++++|+|+ .++.|++++... .+|+++++|+.+.. |.++||+||+.-
T Consensus 40 p~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~-P~~~FDLIV~SE 114 (201)
T PF05401_consen 40 PRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL---PHVEWIQADVPEFW-PEGRFDLIVLSE 114 (201)
T ss_dssp TTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT----SS-EEEEEEES
T ss_pred CccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCC-CCCCeeEEEEeh
Confidence 3344468999999999999999998 56999999999 999999998753 45999999998875 459999999988
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
++|++.....+..++..+...|+|||.+|...
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 88999777788999999999999999999643
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=130.01 Aligned_cols=107 Identities=23% Similarity=0.318 Sum_probs=90.2
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHH-cCC-CeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAK-AGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~-~g~-~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (405)
...++.+|||||||+|..+..+++ .|. .+|+++|+++ |++.|+++....++. +++++.+|++++++++++||+|++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCCCCCceeEEEE
Confidence 456889999999999998887777 343 4899999999 999999999888874 699999999998887789999999
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+.+.+ +..+...++..+.++|||||+++...
T Consensus 153 ~~v~~---~~~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 153 NCVIN---LSPDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred cCccc---CCCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 76533 33566788999999999999998643
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-13 Score=129.57 Aligned_cols=101 Identities=27% Similarity=0.376 Sum_probs=85.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
..++.+|||+|||+|.++..+++.|+.+|+|+|+++ +++.|++++..+++.+++.+...+... ...++||+|+++.+
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~~~~~fDlVvan~~ 234 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--PIEGKADVIVANIL 234 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--ccCCCceEEEEecC
Confidence 347789999999999999999999888999999999 999999999999988778888776433 22478999999764
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
. ..+..++..+.++|||||.++.+
T Consensus 235 ~------~~l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 235 A------EVIKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred H------HHHHHHHHHHHHHcCCCcEEEEE
Confidence 2 34567888899999999999854
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6e-14 Score=130.24 Aligned_cols=106 Identities=25% Similarity=0.270 Sum_probs=85.7
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCcee
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (405)
.+.+.....++.+|||+|||+|.++..+++.|. +|+++|+|+ |++.|+++.. .+.++.+|++.+++++++||
T Consensus 33 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~~~~fD 105 (251)
T PRK10258 33 ALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLATATFD 105 (251)
T ss_pred HHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCCCCcEE
Confidence 333334444678999999999999999988764 999999999 9999987642 24688999999888778999
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+|+++.. +.+..++..++.++.++|+|||.+++.
T Consensus 106 ~V~s~~~---l~~~~d~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 106 LAWSNLA---VQWCGNLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred EEEECch---hhhcCCHHHHHHHHHHHcCCCeEEEEE
Confidence 9999754 333457788999999999999999854
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.8e-13 Score=111.29 Aligned_cols=105 Identities=23% Similarity=0.303 Sum_probs=84.9
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc-cCCCCceeEEE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDIII 194 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~Iv 194 (405)
....++.+|||+|||+|.++..+++. +..+|+++|+|+ +++.+++++...++. +++++.+|+... ....++||+|+
T Consensus 15 ~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~v~ 93 (124)
T TIGR02469 15 LRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDSLPEPDRVF 93 (124)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhhcCCCCEEE
Confidence 44556789999999999999999985 457999999999 999999999988875 589999987653 22236899999
Q ss_pred EccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+... ......+++.+.++|+|||.++...
T Consensus 94 ~~~~------~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 94 IGGS------GGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ECCc------chhHHHHHHHHHHHcCCCCEEEEEe
Confidence 8532 1345688999999999999998653
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=8e-14 Score=125.94 Aligned_cols=107 Identities=30% Similarity=0.365 Sum_probs=90.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC--CCCceeEEEE
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL--PVTKVDIIIS 195 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~D~Iv~ 195 (405)
.....+|||+|||+|.+++++|++ ...+++|||+.+ +++.|+++++.|++.++|+++++|+.++.. ...+||+|+|
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 344789999999999999999996 557999999999 999999999999999999999999998863 3357999999
Q ss_pred ccccccccChh----------------hHHHHHHHHHhcccCCcEEEe
Q 015534 196 EWMGYFLLFEN----------------MLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 196 ~~~~~~l~~~~----------------~~~~~l~~~~~~LkpgG~lip 227 (405)
|+. |+-.+.. .++.++....++|||||.+..
T Consensus 122 NPP-yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~ 168 (248)
T COG4123 122 NPP-YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF 168 (248)
T ss_pred CCC-CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence 985 3332221 357888899999999999863
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.5e-14 Score=127.43 Aligned_cols=146 Identities=23% Similarity=0.222 Sum_probs=109.6
Q ss_pred CCCCCcCCCCCCCccccccccccCchhhhHHhhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeE
Q 015534 69 DADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHV 148 (405)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V 148 (405)
++.++++.+++..+ +.||+.++..+.+..+.. .....+.......++.+|||||||+|.++..+++.+. +|
T Consensus 3 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v 73 (233)
T PRK05134 3 NVDPAEIAKFSALA--ARWWDPNGEFKPLHRINP------LRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGA-DV 73 (233)
T ss_pred cccHHHHHHHHHHH--HHHhccCCCcHHHHHhhH------HHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC-eE
Confidence 45555666666666 778888877665554422 2223333334456788999999999999999998865 89
Q ss_pred EEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 149 YAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 149 ~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
+++|+++ +++.|++++...+. .++++..++.++. ...++||+|++..+ +.+......++..+.++|+|||.++
T Consensus 74 ~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~~~---l~~~~~~~~~l~~~~~~L~~gG~l~ 148 (233)
T PRK05134 74 TGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPGQFDVVTCMEM---LEHVPDPASFVRACAKLVKPGGLVF 148 (233)
T ss_pred EEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCCccEEEEhhH---hhccCCHHHHHHHHHHHcCCCcEEE
Confidence 9999999 99999999887765 4788888888765 23479999998543 3344567788999999999999988
Q ss_pred ec
Q 015534 227 PD 228 (405)
Q Consensus 227 p~ 228 (405)
..
T Consensus 149 v~ 150 (233)
T PRK05134 149 FS 150 (233)
T ss_pred EE
Confidence 64
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-13 Score=127.56 Aligned_cols=102 Identities=18% Similarity=0.235 Sum_probs=83.1
Q ss_pred HhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015534 115 YQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (405)
Q Consensus 115 ~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (405)
.......++.+|||||||+|.++..+++. +..+|+|+|+|+ |++.|++. +++++.+|++++. +.++||+
T Consensus 22 l~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~-~~~~fD~ 92 (255)
T PRK14103 22 LARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK-PKPDTDV 92 (255)
T ss_pred HHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC-CCCCceE
Confidence 33355567889999999999999999985 345999999999 99999752 3789999998874 4579999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
|++..+.+++ .+...++..+.++|||||.++..
T Consensus 93 v~~~~~l~~~---~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 93 VVSNAALQWV---PEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred EEEehhhhhC---CCHHHHHHHHHHhCCCCcEEEEE
Confidence 9997654433 56788999999999999998864
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=125.89 Aligned_cols=102 Identities=18% Similarity=0.171 Sum_probs=86.8
Q ss_pred CEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccccc
Q 015534 124 KVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (405)
Q Consensus 124 ~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~ 201 (405)
++|||||||+|.++..+++. +..+|+|+|+|+ +++.|++++...++.++++++..|+...+.+ ++||+|++..+.+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~- 78 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIH- 78 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHH-
Confidence 37999999999999999885 346999999999 9999999999999988999999999776655 6899999854433
Q ss_pred ccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 202 LLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+......++..+.++|+|||.++...
T Consensus 79 --~~~~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 79 --HIKDKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred --hCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 33567899999999999999998653
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.9e-13 Score=130.26 Aligned_cols=109 Identities=14% Similarity=0.046 Sum_probs=85.5
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCC--CcEEEEEcccccccCCCCceeEE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFS--NVITVLKGKIEEIELPVTKVDII 193 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~D~I 193 (405)
.....+.+|||+|||+|.+++.+++. +..+|+++|.|+ +++.|+++++.++.. .+++++..|..... +..+||+|
T Consensus 224 lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~-~~~~fDlI 302 (378)
T PRK15001 224 LPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV-EPFRFNAV 302 (378)
T ss_pred CCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC-CCCCEEEE
Confidence 33344569999999999999999985 456999999999 999999999988753 36899999886542 33689999
Q ss_pred EEcccccccc--ChhhHHHHHHHHHhcccCCcEEEe
Q 015534 194 ISEWMGYFLL--FENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 194 v~~~~~~~l~--~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|++..+... .......++..+.++|+|||.++.
T Consensus 303 lsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~i 338 (378)
T PRK15001 303 LCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYI 338 (378)
T ss_pred EECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEE
Confidence 9997543221 223456788899999999999874
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.5e-13 Score=125.15 Aligned_cols=106 Identities=19% Similarity=0.254 Sum_probs=88.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc---CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA---GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~---g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
.++.+|||||||+|.++..+++. +..+|+|+|+|+ |++.|++++...+...+++++++|+.+++++ .+|+|++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~ 129 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILN 129 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeee
Confidence 46789999999999999999884 346899999999 9999999998776656799999999988764 58999986
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
...+++ .......++..+.+.|+|||.++...
T Consensus 130 ~~l~~~-~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 130 FTLQFL-PPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred cchhhC-CHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 554443 23456789999999999999998764
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.1e-13 Score=120.66 Aligned_cols=106 Identities=26% Similarity=0.300 Sum_probs=83.7
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (405)
.+.+.....++.+|||||||+|..+..+++. + ..+|+++|+++ +++.|++++..+++.++++++.+|..+......+
T Consensus 63 ~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (205)
T PRK13944 63 MMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAP 142 (205)
T ss_pred HHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCC
Confidence 3444445678889999999999999999884 2 35999999999 9999999999999877799999999875444478
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
||+|++..... .+...+.+.|+|||+++.
T Consensus 143 fD~Ii~~~~~~---------~~~~~l~~~L~~gG~lvi 171 (205)
T PRK13944 143 FDAIIVTAAAS---------TIPSALVRQLKDGGVLVI 171 (205)
T ss_pred ccEEEEccCcc---------hhhHHHHHhcCcCcEEEE
Confidence 99999864311 122456688999999864
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.8e-13 Score=137.29 Aligned_cols=107 Identities=24% Similarity=0.240 Sum_probs=88.7
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
....++.+|||||||+|.++..+++....+|+|+|+|+ +++.|+++.. +...+++++.+|+...++++++||+|+|.
T Consensus 262 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD~I~s~ 339 (475)
T PLN02336 262 LDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPDNSFDVIYSR 339 (475)
T ss_pred cCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCCCCEEEEEEC
Confidence 34567889999999999999999885344999999999 9999998765 34457999999999888777899999996
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
.+ +.+..+...++..+.++|||||.++...
T Consensus 340 ~~---l~h~~d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 340 DT---ILHIQDKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred Cc---ccccCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 44 3344677899999999999999998654
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.2e-13 Score=125.90 Aligned_cols=105 Identities=16% Similarity=0.177 Sum_probs=85.0
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCcee
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (405)
+.......++.+|||||||+|.++..+++. +..+|+|+|+|+ |++.|+++. .+++++.+|+..+.. .++||
T Consensus 23 ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~-~~~fD 95 (258)
T PRK01683 23 LLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP-PQALD 95 (258)
T ss_pred HHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC-CCCcc
Confidence 344455677889999999999999999984 456999999999 999998764 348899999987754 37999
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+|+++...+++ .+...++..+.++|||||.++..
T Consensus 96 ~v~~~~~l~~~---~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 96 LIFANASLQWL---PDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred EEEEccChhhC---CCHHHHHHHHHHhcCCCcEEEEE
Confidence 99997653333 46678999999999999998864
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.1e-13 Score=129.06 Aligned_cols=100 Identities=22% Similarity=0.200 Sum_probs=83.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
.++.+|||||||+|.++..+++ .+..+|+++|.|+ |++.|+++... .+++++.+|+++++++.++||+|++..+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~sFDvVIs~~~ 187 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCCceeEEEEcCh
Confidence 4678999999999999988887 4556999999999 99999987643 3488999999998887789999998644
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+.+..+...+++++.++|+|||.++.
T Consensus 188 ---L~~~~d~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 188 ---IEYWPDPQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred ---hhhCCCHHHHHHHHHHhcCCCcEEEE
Confidence 33334567889999999999999874
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.3e-13 Score=120.94 Aligned_cols=106 Identities=19% Similarity=0.211 Sum_probs=84.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccc-cccc--CCCCceeEEEEc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI-EEIE--LPVTKVDIIISE 196 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~--~~~~~~D~Iv~~ 196 (405)
++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|++++..+++ .+++++++|+ +.++ ++.++||+|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 5679999999999999999884 456899999999 99999999998887 4599999999 7665 556889999985
Q ss_pred ccccccc--Ch---hhHHHHHHHHHhcccCCcEEEec
Q 015534 197 WMGYFLL--FE---NMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 197 ~~~~~l~--~~---~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
....... +. .....++..+.++|||||.++..
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 155 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA 155 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence 4221110 00 12467899999999999998853
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.1e-13 Score=123.75 Aligned_cols=95 Identities=31% Similarity=0.449 Sum_probs=78.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
..++.+|||+|||+|.+++.+++.|+.+|+|+|+|+ +++.|++++..+++.+++.+..++ .+||+|+++..
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~--------~~fD~Vvani~ 188 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD--------LKADVIVANIL 188 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC--------CCcCEEEEcCc
Confidence 357889999999999999999988887899999999 999999999999875555544332 27999999753
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
. ..+..++..+.++|||||.++.+
T Consensus 189 ~------~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 189 A------NPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred H------HHHHHHHHHHHHhcCCCcEEEEE
Confidence 2 34567788899999999999864
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.2e-13 Score=135.10 Aligned_cols=108 Identities=19% Similarity=0.315 Sum_probs=87.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEE
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIIS 195 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~ 195 (405)
..++.+|||||||+|.++..+++ .+..+|+|+|+|+ |++.|+++....+ .++.++++|+.+++ +++++||+|++
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEEEEE
Confidence 44688999999999999888887 4556999999999 9999998876655 35889999998876 56689999998
Q ss_pred cccccccc----------ChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 196 EWMGYFLL----------FENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 196 ~~~~~~l~----------~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+.+.+.+. ....+..+++.+.++|||||.++...
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 75433221 12466789999999999999998643
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.6e-13 Score=123.95 Aligned_cols=106 Identities=26% Similarity=0.417 Sum_probs=84.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+ +++.|++++..+++.++++++.+|+.+. ++.++||+|++++.
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-LPGRKYDLIVSNPP 198 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-cCCCCccEEEECCC
Confidence 34579999999999999999985 345999999999 9999999999999877899999998653 34468999999863
Q ss_pred cccc-----------cCh------------hhHHHHHHHHHhcccCCcEEEec
Q 015534 199 GYFL-----------LFE------------NMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 199 ~~~l-----------~~~------------~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+.- .++ .....++..+.++|+|||+++..
T Consensus 199 -y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 199 -YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred -CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 211 111 12356788889999999998854
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-12 Score=115.07 Aligned_cols=101 Identities=27% Similarity=0.264 Sum_probs=82.8
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (405)
....++.+|||||||+|.++..+++.+ ..+|+++|+++ +++.|++++..+++. +++++.+|... .++ ++||+|++
T Consensus 27 l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~-~~~-~~~D~v~~ 103 (187)
T PRK08287 27 LELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI-ELP-GKADAIFI 103 (187)
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh-hcC-cCCCEEEE
Confidence 445678899999999999999999853 46999999999 999999999988874 59999998753 333 68999998
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
... . ..+..++..+.+.|+|||+++.
T Consensus 104 ~~~---~---~~~~~~l~~~~~~Lk~gG~lv~ 129 (187)
T PRK08287 104 GGS---G---GNLTAIIDWSLAHLHPGGRLVL 129 (187)
T ss_pred CCC---c---cCHHHHHHHHHHhcCCCeEEEE
Confidence 532 1 2356788888999999999885
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-12 Score=117.04 Aligned_cols=105 Identities=27% Similarity=0.340 Sum_probs=86.6
Q ss_pred ccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeE
Q 015534 117 NKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDI 192 (405)
Q Consensus 117 ~~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~ 192 (405)
.....++.+|||+|||+|.++..+++. + ..+|+++|+++ +++.|++++..+++.++++++.+|..+.. ...++||.
T Consensus 35 ~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~ 114 (198)
T PRK00377 35 KLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDR 114 (198)
T ss_pred HcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCE
Confidence 356778899999999999999999873 3 46999999999 99999999999987677999999997642 22368999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|++.. +...+..++..+.++|+|||+++.
T Consensus 115 V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 115 IFIGG------GSEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred EEECC------CcccHHHHHHHHHHHcCCCcEEEE
Confidence 99843 124567889999999999999885
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.2e-13 Score=119.33 Aligned_cols=104 Identities=21% Similarity=0.205 Sum_probs=82.1
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcC--CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (405)
+.+.....++.+|||||||+|.++..+++.. ..+|+++|+++ +++.|++++..+++ ++++++.+|..+......+|
T Consensus 69 ~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~~~~f 147 (215)
T TIGR00080 69 MTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEPLAPY 147 (215)
T ss_pred HHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcccCCC
Confidence 3333456788999999999999999999853 24699999999 99999999999998 56999999997754444689
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+|++.... ..+...+.+.|+|||+++.
T Consensus 148 D~Ii~~~~~---------~~~~~~~~~~L~~gG~lv~ 175 (215)
T TIGR00080 148 DRIYVTAAG---------PKIPEALIDQLKEGGILVM 175 (215)
T ss_pred CEEEEcCCc---------ccccHHHHHhcCcCcEEEE
Confidence 999985321 1223456688999999874
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.9e-13 Score=115.66 Aligned_cols=102 Identities=19% Similarity=0.201 Sum_probs=82.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
.++.+|||+|||+|.++..+++.+. +|+++|+|+ +++.|++++..++. +++++.+|+.+.. .++||+|++++..
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~fD~Vi~n~p~ 92 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV--RGKFDVILFNPPY 92 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc--CCcccEEEECCCC
Confidence 4567899999999999999999876 999999999 99999999998876 4899999987653 3689999998643
Q ss_pred ccccC------------------hhhHHHHHHHHHhcccCCcEEEe
Q 015534 200 YFLLF------------------ENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 200 ~~l~~------------------~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+.... ......++..+.++|+|||.++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~ 138 (179)
T TIGR00537 93 LPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQL 138 (179)
T ss_pred CCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEE
Confidence 21111 11246788999999999999875
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-12 Score=119.81 Aligned_cols=116 Identities=20% Similarity=0.240 Sum_probs=92.8
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (405)
.+.+.+.......++.+|||+|||+|.++..+++. +..+|+|+|+++ +++.|+++... ...+++++.+|+..+++
T Consensus 6 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~~~ 83 (241)
T PRK08317 6 RYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGLPF 83 (241)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccCCC
Confidence 44444555566778899999999999999999884 346999999999 99999987332 23569999999988877
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+.++||+|++..+ +.+..++..++..+.++|+|||.++...
T Consensus 84 ~~~~~D~v~~~~~---~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 84 PDGSFDAVRSDRV---LQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred CCCCceEEEEech---hhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 7789999998654 3333567889999999999999988654
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=120.17 Aligned_cols=107 Identities=21% Similarity=0.269 Sum_probs=90.2
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcC--CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 194 (405)
....++.+|||+|||+|.++..+++.+ ..+|+++|+++ +++.+++++..+++..+++++.+|+.+.+.+.++||+|+
T Consensus 47 ~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~ 126 (239)
T PRK00216 47 LGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVT 126 (239)
T ss_pred hCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEE
Confidence 334567899999999999999999965 47999999999 999999998876666679999999998877668999999
Q ss_pred EccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+... +.+...+..++..+.++|+|||.++.
T Consensus 127 ~~~~---l~~~~~~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 127 IAFG---LRNVPDIDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred Eecc---cccCCCHHHHHHHHHHhccCCcEEEE
Confidence 8433 44446778899999999999999875
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=118.24 Aligned_cols=104 Identities=21% Similarity=0.205 Sum_probs=82.2
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (405)
+.......++.+|||||||+|.++..+++. + ..+|+++|+++ +++.|++++...++ ++++++++|......+.++|
T Consensus 68 ~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~~~~~f 146 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYEENAPY 146 (212)
T ss_pred HHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCcCCCc
Confidence 333455678999999999999999999885 3 25999999999 99999999999887 46999999987765555789
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+|++... . ..+...+.+.|||||+++.
T Consensus 147 D~I~~~~~---~------~~~~~~l~~~LkpgG~lvi 174 (212)
T PRK13942 147 DRIYVTAA---G------PDIPKPLIEQLKDGGIMVI 174 (212)
T ss_pred CEEEECCC---c------ccchHHHHHhhCCCcEEEE
Confidence 99998532 1 1222345678999999764
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-12 Score=118.18 Aligned_cols=105 Identities=26% Similarity=0.285 Sum_probs=85.0
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
...++.+|||+|||+|.++..+++.+..+|+++|+++ +++.|++++..+++ +++++.+|+.+. ++.++||+|++++
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~-~~~~~fD~Vi~np 109 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA-VEFRPFDVVVSNP 109 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh-ccCCCeeEEEECC
Confidence 3467789999999999999999998777999999999 99999999988876 488999998764 3457899999986
Q ss_pred ccccccCh-------------------hhHHHHHHHHHhcccCCcEEEe
Q 015534 198 MGYFLLFE-------------------NMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 198 ~~~~l~~~-------------------~~~~~~l~~~~~~LkpgG~lip 227 (405)
. +....+ ..+..++..+.++|||||+++.
T Consensus 110 P-y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~ 157 (223)
T PRK14967 110 P-YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL 157 (223)
T ss_pred C-CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 3 222111 1246678888999999999884
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.4e-14 Score=113.20 Aligned_cols=95 Identities=24% Similarity=0.298 Sum_probs=61.6
Q ss_pred EEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-C-CCCceeEEEEccccccc
Q 015534 127 LDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-L-PVTKVDIIISEWMGYFL 202 (405)
Q Consensus 127 LDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~-~~~~~D~Iv~~~~~~~l 202 (405)
||||||+|.++..+++. +..+++|+|+|+ |++.|++++...+... ...+..+..+.. . ..++||+|++..+.+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 79999999999999885 556999999999 9999999998877532 334443333322 1 12599999996554444
Q ss_pred cChhhHHHHHHHHHhcccCCcEE
Q 015534 203 LFENMLNTVLYARDKWLVDDGIV 225 (405)
Q Consensus 203 ~~~~~~~~~l~~~~~~LkpgG~l 225 (405)
.++..+++.+.++|+|||++
T Consensus 80 ---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---S-HHHHHHHHTTT-TSS-EE
T ss_pred ---hhHHHHHHHHHHHcCCCCCC
Confidence 78889999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.7e-13 Score=115.76 Aligned_cols=95 Identities=24% Similarity=0.220 Sum_probs=75.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
..++.+|||||||+|.++..+++.|. +|+|+|+++ +++. ..+.....+......+.++||+|+|..+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPDGSFDLIICNDV 87 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHSSSEEEEEEESS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-----------hhhhhhhhhhhhhhccccchhhHhhHHH
Confidence 57788999999999999999999988 999999999 8887 1133333333344445689999999655
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
.+ +..++..++..+.++|||||.++...
T Consensus 88 l~---~~~d~~~~l~~l~~~LkpgG~l~~~~ 115 (161)
T PF13489_consen 88 LE---HLPDPEEFLKELSRLLKPGGYLVISD 115 (161)
T ss_dssp GG---GSSHHHHHHHHHHHCEEEEEEEEEEE
T ss_pred Hh---hcccHHHHHHHHHHhcCCCCEEEEEE
Confidence 44 44678999999999999999998643
|
... |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-12 Score=123.89 Aligned_cols=103 Identities=26% Similarity=0.468 Sum_probs=83.4
Q ss_pred CEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccccc
Q 015534 124 KVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (405)
Q Consensus 124 ~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~ 201 (405)
.+|||+|||+|.++..+++. +..+|+|+|+|+ +++.|++++..+++.++++++++|+.+. ++.++||+|++++. +.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPP-yi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPP-YV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCC-CC
Confidence 68999999999999999984 456999999999 9999999999999877899999998653 33368999999863 21
Q ss_pred c-----------cCh------------hhHHHHHHHHHhcccCCcEEEec
Q 015534 202 L-----------LFE------------NMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 202 l-----------~~~------------~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
- .++ .....++..+.++|+|||.++..
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1 011 22357788889999999998854
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.9e-13 Score=119.79 Aligned_cols=90 Identities=23% Similarity=0.260 Sum_probs=76.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (405)
++.+|||||||||.++..+++....+|+|+|+|+ |++.|++. ..++++|++++++++++||+|++...
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~~-- 119 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSFDVVMSSFA-- 119 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCEEEEEecCh--
Confidence 4679999999999999999987334999999999 99998863 23578999999998899999999543
Q ss_pred cccChhhHHHHHHHHHhcccCCc
Q 015534 201 FLLFENMLNTVLYARDKWLVDDG 223 (405)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG 223 (405)
+.+..+++.++.++.|+|||.+
T Consensus 120 -l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 120 -LHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred -hhccCCHHHHHHHHHHHhcCce
Confidence 5555788899999999999954
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-12 Score=117.43 Aligned_cols=112 Identities=23% Similarity=0.257 Sum_probs=89.6
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCC--CeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~--~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (405)
+...+.......++.+|||+|||+|.++..+++.+. .+++++|+++ +++.++++.. ...+++++.+|+.+.+++
T Consensus 27 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~ 103 (223)
T TIGR01934 27 WRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFE 103 (223)
T ss_pred HHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCC
Confidence 333333334445788999999999999999998654 4999999999 9999998875 335689999999988776
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.++||+|++... +.+...+..+++.+.++|+|||+++.
T Consensus 104 ~~~~D~i~~~~~---~~~~~~~~~~l~~~~~~L~~gG~l~~ 141 (223)
T TIGR01934 104 DNSFDAVTIAFG---LRNVTDIQKALREMYRVLKPGGRLVI 141 (223)
T ss_pred CCcEEEEEEeee---eCCcccHHHHHHHHHHHcCCCcEEEE
Confidence 678999998543 44556778899999999999999885
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.8e-13 Score=121.07 Aligned_cols=112 Identities=20% Similarity=0.151 Sum_probs=86.3
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (405)
+........|++|||||||.|..+..++..|++.|+|+|.++ .....+..-.-.|....+.++..-+++++. .+.||+
T Consensus 107 l~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDt 185 (315)
T PF08003_consen 107 LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDT 185 (315)
T ss_pred HHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCE
Confidence 343444678999999999999999999999999999999999 665544433333433445555567788876 589999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
|+|-.+.| |..++-..+..++..|+|||.+|.++
T Consensus 186 VF~MGVLY---Hrr~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 186 VFSMGVLY---HRRSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred EEEeeehh---ccCCHHHHHHHHHHhhCCCCEEEEEE
Confidence 99966644 44677788999999999999988654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.9e-12 Score=116.75 Aligned_cols=137 Identities=23% Similarity=0.264 Sum_probs=107.0
Q ss_pred cccccccCchhhhHHhhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHH
Q 015534 85 DYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQI 163 (405)
Q Consensus 85 ~~~~~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~ 163 (405)
..||+.++.++.+..+ +..+...+.+.+........+.+|||+|||+|.++..+++.+. +|+++|+++ +++.++++
T Consensus 10 ~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~ 86 (224)
T TIGR01983 10 HEWWDPNGKFKPLHKM--NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLH 86 (224)
T ss_pred HHhcCCCCcHHHHHHh--hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHH
Confidence 5678888777766655 5666666666666442234578999999999999999988765 799999999 99999999
Q ss_pred HHHcCCCCcEEEEEcccccccCC-CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 164 VEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 164 ~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+...+.. ++++...|+.++... .++||+|++..+ +.+...+..++..+.++|+|||.++..
T Consensus 87 ~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~~~~~---l~~~~~~~~~l~~~~~~L~~gG~l~i~ 148 (224)
T TIGR01983 87 AKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCMEV---LEHVPDPQAFIRACAQLLKPGGILFFS 148 (224)
T ss_pred HHHcCCC-ceEEEeCCHHHhhcCCCCCccEEEehhH---HHhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 8887752 589999998877643 378999998543 334467778999999999999998754
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.1e-13 Score=113.42 Aligned_cols=100 Identities=18% Similarity=0.166 Sum_probs=84.1
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEE-EEEccccccc-CCCCceeEEEEccccc
Q 015534 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVIT-VLKGKIEEIE-LPVTKVDIIISEWMGY 200 (405)
Q Consensus 124 ~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~-~~~~d~~~~~-~~~~~~D~Iv~~~~~~ 200 (405)
..|||||||||..-.+.--.+..+|+++|+++ |-++|.+.++++... +++ |++++.++++ ++++++|+||+..+
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~-~~~~fvva~ge~l~~l~d~s~DtVV~Tlv-- 154 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPL-QVERFVVADGENLPQLADGSYDTVVCTLV-- 154 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCc-ceEEEEeechhcCcccccCCeeeEEEEEE--
Confidence 46899999999775555444566999999999 999999999888554 466 9999999998 77899999999654
Q ss_pred cccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 201 FLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+....++...+.++.++|+|||++++
T Consensus 155 -LCSve~~~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 155 -LCSVEDPVKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred -EeccCCHHHHHHHHHHhcCCCcEEEE
Confidence 55667888999999999999999985
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.7e-12 Score=109.40 Aligned_cols=109 Identities=19% Similarity=0.216 Sum_probs=91.9
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (405)
.....+.+.++.+++|||||||.++..++.. +..+|||+|.++ +++..++|+++.++ ++++++.+++.+......++
T Consensus 25 l~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~~~~~~ 103 (187)
T COG2242 25 LTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALPDLPSP 103 (187)
T ss_pred HHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhcCCCCC
Confidence 3445577889999999999999999999974 467999999999 99999999999997 56999999998875443479
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
|.|+... ...++.+++.+...|||||+++.+.
T Consensus 104 daiFIGG-------g~~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 104 DAIFIGG-------GGNIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred CEEEECC-------CCCHHHHHHHHHHHcCcCCeEEEEe
Confidence 9999632 1577889999999999999999654
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.7e-12 Score=123.80 Aligned_cols=115 Identities=21% Similarity=0.222 Sum_probs=93.5
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (405)
+..++.......++.+|||+|||+|.++..++..|. +|+|+|+++ |+..|++++...++.+ ++++.+|+.+++++.+
T Consensus 170 la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~ 247 (329)
T TIGR01177 170 LARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSE 247 (329)
T ss_pred HHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccC
Confidence 344444445567889999999999999988888755 999999999 9999999999999876 8999999999887668
Q ss_pred ceeEEEEccccccc----c---ChhhHHHHHHHHHhcccCCcEEEe
Q 015534 189 KVDIIISEWMGYFL----L---FENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l----~---~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+||+|++++. +.. . .......++..+.++|+|||+++.
T Consensus 248 ~~D~Iv~dPP-yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~ 292 (329)
T TIGR01177 248 SVDAIATDPP-YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVY 292 (329)
T ss_pred CCCEEEECCC-CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEE
Confidence 9999999863 221 0 113357889999999999999874
|
This family is found exclusively in the Archaea. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.40 E-value=4e-12 Score=115.55 Aligned_cols=103 Identities=25% Similarity=0.250 Sum_probs=84.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
..++.+|||+|||+|.++..+++.+. +|+|+|+|+ |++.|++++...+..+++++.++|+..++ ++||+|++..+
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~ 128 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDV 128 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhH
Confidence 45688999999999999999998855 999999999 99999999988877667999999998764 78999998543
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.+++ ....+..++..+.+++++++.+..
T Consensus 129 l~~~-~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 129 LIHY-PASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred HHhC-CHHHHHHHHHHHHHHhCCCEEEEE
Confidence 2222 234567788888888887766654
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.5e-12 Score=114.55 Aligned_cols=106 Identities=17% Similarity=0.219 Sum_probs=83.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCceeEEEEc
Q 015534 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISE 196 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~Iv~~ 196 (405)
...+|||||||+|.++..+++ .+..+|+|+|+++ +++.|++++...++. +++++++|+.++. ++.+.+|.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 456899999999999999988 4556999999999 999999999998885 6999999998754 444689999986
Q ss_pred ccccccc--C---hhhHHHHHHHHHhcccCCcEEEec
Q 015534 197 WMGYFLL--F---ENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 197 ~~~~~l~--~---~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
....... + .-..+.++..+.++|||||.++..
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 4322111 0 011257889999999999998753
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.5e-12 Score=119.67 Aligned_cols=124 Identities=24% Similarity=0.307 Sum_probs=92.0
Q ss_pred CHHhHHHHHHHHHhcc-CCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcc
Q 015534 103 DVVRTKSYQNVIYQNK-FLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK 179 (405)
Q Consensus 103 d~~r~~~~~~~i~~~~-~~~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d 179 (405)
.+..++.+...+.... ...++.+|||+|||+|.+++.+++.. ..+|+|+|+|+ +++.|++++..+++.++++++.+|
T Consensus 94 Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d 173 (284)
T TIGR00536 94 PRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSN 173 (284)
T ss_pred CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECc
Confidence 4445555555544322 12233699999999999999999853 46999999999 999999999999987779999999
Q ss_pred cccccCCCCceeEEEEcccccc-----------ccCh------------hhHHHHHHHHHhcccCCcEEEec
Q 015534 180 IEEIELPVTKVDIIISEWMGYF-----------LLFE------------NMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 180 ~~~~~~~~~~~D~Iv~~~~~~~-----------l~~~------------~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+.+. ++..+||+|++++. +. ..++ .....++..+.++|+|||+++..
T Consensus 174 ~~~~-~~~~~fDlIvsNPP-yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 174 LFEP-LAGQKIDIIVSNPP-YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred hhcc-CcCCCccEEEECCC-CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 8764 33348999999752 21 1111 13567888889999999998754
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.4e-12 Score=120.01 Aligned_cols=109 Identities=14% Similarity=0.149 Sum_probs=82.5
Q ss_pred CCCCCEEEEEcCCCcH----HHHHHHHcC------CCeEEEEechH-HHHHHHHHHH----HcC----------------
Q 015534 120 LFKDKVVLDVGAGTGI----LSLFCAKAG------AAHVYAVECSQ-MANMAKQIVE----ANG---------------- 168 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~----l~~~la~~g------~~~V~~vD~s~-~~~~a~~~~~----~~~---------------- 168 (405)
..++.+|||+|||+|. +++.+++.+ ..+|+|+|+|+ |++.|++.+- ..+
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 3456799999999995 566676642 24899999999 9999997531 001
Q ss_pred ------CCCcEEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 169 ------FSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 169 ------~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+.++|+|.+.|+.+.+.+.++||+|+|..+..++ .......++..+++.|+|||+++...
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf-~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYF-DEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhC-CHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 1246899999999887766899999996544433 33466789999999999999998643
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.1e-12 Score=125.24 Aligned_cols=109 Identities=22% Similarity=0.235 Sum_probs=86.4
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015534 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (405)
Q Consensus 112 ~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (405)
+.+.......++.+|||||||+|.++..+++....+|+|+|+|+ +++.|+++.. ++ .+++...|..++ .++|
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l---~~~f 229 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL---NGQF 229 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc---CCCC
Confidence 34444456778999999999999999999985334999999999 9999999874 33 388888888765 2789
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
|+|++..+..++ +...++.++..+.++|||||.++..
T Consensus 230 D~Ivs~~~~ehv-g~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 230 DRIVSVGMFEHV-GPKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred CEEEEeCchhhC-ChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 999986553333 2345678999999999999998864
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.1e-12 Score=113.28 Aligned_cols=102 Identities=19% Similarity=0.088 Sum_probs=80.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCC--------------CCcEEEEEcccccccC
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF--------------SNVITVLKGKIEEIEL 185 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~--------------~~~i~~~~~d~~~~~~ 185 (405)
.++.+|||+|||.|..+..+|+.|. +|+|+|+|+ +++.|.+. +++ ..+|+++++|+.++..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence 4667999999999999999999988 999999999 99976432 221 2358999999988764
Q ss_pred C-CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 186 P-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 186 ~-~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
. .++||.|+...+..++ .......++..+.++|||||.++.
T Consensus 109 ~~~~~fD~i~D~~~~~~l-~~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 109 ADLGPVDAVYDRAALIAL-PEEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred ccCCCcCEEEechhhccC-CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 2 3679999975433333 456667899999999999998664
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.2e-12 Score=121.63 Aligned_cols=103 Identities=21% Similarity=0.206 Sum_probs=82.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
....+|||+|||+|.++..+++. +..+|+++|+|+ +++.|++++..+++. .+++..|+... . .++||+|++++.
T Consensus 195 ~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~-~-~~~fDlIvsNPP 270 (342)
T PRK09489 195 HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD-I-KGRFDMIISNPP 270 (342)
T ss_pred cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc-c-CCCccEEEECCC
Confidence 34458999999999999999985 346999999999 999999999999875 57778887553 2 378999999875
Q ss_pred ccccc--ChhhHHHHHHHHHhcccCCcEEEe
Q 015534 199 GYFLL--FENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 199 ~~~l~--~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.+... .......++..+.+.|||||.++.
T Consensus 271 FH~g~~~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 271 FHDGIQTSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred ccCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 43221 124567899999999999999864
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.5e-12 Score=123.03 Aligned_cols=128 Identities=21% Similarity=0.251 Sum_probs=96.3
Q ss_pred hhhHHhhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCc
Q 015534 95 GIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNV 172 (405)
Q Consensus 95 ~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~ 172 (405)
......+-++..++.+.+.+.... .++.+|||+|||+|.+++.+++ .+..+|+|+|+|+ +++.|++++..++. +
T Consensus 226 ~V~p~vLIPRpeTE~LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--r 301 (423)
T PRK14966 226 AVNPNVLIPRPETEHLVEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--R 301 (423)
T ss_pred EeCCCccCCCccHHHHHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--c
Confidence 344445556777888888776543 3567999999999999999887 4567999999999 99999999998874 6
Q ss_pred EEEEEcccccccCC-CCceeEEEEccccccccC-----------h------------hhHHHHHHHHHhcccCCcEEEe
Q 015534 173 ITVLKGKIEEIELP-VTKVDIIISEWMGYFLLF-----------E------------NMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 173 i~~~~~d~~~~~~~-~~~~D~Iv~~~~~~~l~~-----------~------------~~~~~~l~~~~~~LkpgG~lip 227 (405)
++++++|+.+...+ .++||+|+|++. +.... + .....++..+.+.|+|||.++.
T Consensus 302 V~fi~gDl~e~~l~~~~~FDLIVSNPP-YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil 379 (423)
T PRK14966 302 VEFAHGSWFDTDMPSEGKWDIIVSNPP-YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL 379 (423)
T ss_pred EEEEEcchhccccccCCCccEEEECCC-CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 99999998764332 358999999874 32111 0 1234677777889999999774
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=8e-12 Score=111.52 Aligned_cols=107 Identities=21% Similarity=0.287 Sum_probs=83.3
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc-cCCCCce
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKV 190 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~ 190 (405)
+.......++.+|||+|||+|.++..+++. +..+|+++|+++ +++.|++++..+++. +++++.+|+.+. ......+
T Consensus 32 l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 32 LISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHHHhhCCCCC
Confidence 444455668889999999999999999874 456999999999 999999999998884 599999998652 2111346
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
|.++... ...+..++..+.++|+|||.++..
T Consensus 111 d~v~~~~-------~~~~~~~l~~~~~~LkpgG~li~~ 141 (196)
T PRK07402 111 DRVCIEG-------GRPIKEILQAVWQYLKPGGRLVAT 141 (196)
T ss_pred CEEEEEC-------CcCHHHHHHHHHHhcCCCeEEEEE
Confidence 7766531 134578899999999999998854
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.8e-12 Score=128.97 Aligned_cols=133 Identities=20% Similarity=0.240 Sum_probs=100.1
Q ss_pred hhhhHHhhcCHHhHHHHHHHHHhccC------------------------CCCCCEEEEEcCCCcHHHHHHHH-cCCCeE
Q 015534 94 FGIHEEMLKDVVRTKSYQNVIYQNKF------------------------LFKDKVVLDVGAGTGILSLFCAK-AGAAHV 148 (405)
Q Consensus 94 ~~~~~~~l~d~~r~~~~~~~i~~~~~------------------------~~~~~~VLDiGcG~G~l~~~la~-~g~~~V 148 (405)
+......|-+++.++.+.+.+..... ..++.+|||+|||+|.+++.+++ .+..+|
T Consensus 86 f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~v 165 (506)
T PRK01544 86 FIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELPNANV 165 (506)
T ss_pred EEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCCCCeE
Confidence 45555677788888888876653321 11346899999999999998887 456699
Q ss_pred EEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccccccc------------Ch----------
Q 015534 149 YAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLL------------FE---------- 205 (405)
Q Consensus 149 ~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~------------~~---------- 205 (405)
+|+|+|+ +++.|++++..+++.++++++.+|+.+. ++.++||+|++++. |... ++
T Consensus 166 ~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~~~~~fDlIvsNPP-Yi~~~~~~~l~~~v~~~EP~~AL~gg~d 243 (506)
T PRK01544 166 IATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-IEKQKFDFIVSNPP-YISHSEKSEMAIETINYEPSIALFAEED 243 (506)
T ss_pred EEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-CcCCCccEEEECCC-CCCchhhhhcCchhhccCcHHHhcCCcc
Confidence 9999999 9999999999999878899999998653 33468999999763 2211 11
Q ss_pred --hhHHHHHHHHHhcccCCcEEEec
Q 015534 206 --NMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 206 --~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.....++..+.++|+|||.++..
T Consensus 244 Gl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 244 GLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEE
Confidence 12345677888999999998864
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.9e-12 Score=124.67 Aligned_cols=108 Identities=21% Similarity=0.227 Sum_probs=87.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCC-CcEEEEEccccccc--C--CCCceeEEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIE--L--PVTKVDIII 194 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~--~--~~~~~D~Iv 194 (405)
.++++|||+|||+|.+++.++..|+.+|+++|+|+ +++.|++++..|++. ++++++++|+.++. + ..++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 35789999999999999988887888999999999 999999999999986 47999999998763 1 236899999
Q ss_pred EccccccccCh-------hhHHHHHHHHHhcccCCcEEEecC
Q 015534 195 SEWMGYFLLFE-------NMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 195 ~~~~~~~l~~~-------~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+++. ++.... .....++....++|+|||.++.++
T Consensus 299 lDPP-~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 299 MDPP-KFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred ECCC-CCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 9975 333222 123455566789999999998654
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.5e-12 Score=115.85 Aligned_cols=100 Identities=27% Similarity=0.342 Sum_probs=83.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
..+.+|||||||+|.++..+++.+ ..+|+++|+++ ++..+++... .++.++.+|+.+.+++.++||+|++..+
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~ 107 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLA 107 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhh
Confidence 345799999999999999999865 45799999999 9999887654 3588999999998877789999999655
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+++..++..++..+.++|+|||.++..
T Consensus 108 ---l~~~~~~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 108 ---LQWCDDLSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred ---hhhccCHHHHHHHHHHHcCCCcEEEEE
Confidence 334456788999999999999999864
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.3e-12 Score=107.76 Aligned_cols=105 Identities=28% Similarity=0.335 Sum_probs=84.2
Q ss_pred EEEEEcCCCcHHHHHHHHcCCC-eEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccc--
Q 015534 125 VVLDVGAGTGILSLFCAKAGAA-HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY-- 200 (405)
Q Consensus 125 ~VLDiGcG~G~l~~~la~~g~~-~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~-- 200 (405)
+|||+|||.|.+...|++.|.. ..+|+|.|+ +++.|+..++++++++.|+|.+.|+.+-.+..++||+|.--....
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAi 149 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAI 149 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeee
Confidence 9999999999999999998764 499999999 999999999999999999999999988665558899888532111
Q ss_pred ccc---ChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 201 FLL---FENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 201 ~l~---~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
.|. ..+.+...+..+.++|+|||++++..
T Consensus 150 sLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS 181 (227)
T KOG1271|consen 150 SLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS 181 (227)
T ss_pred ecCCCCcccceeeehhhHhhccCCCcEEEEEe
Confidence 111 12233456788889999999998644
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.6e-12 Score=112.93 Aligned_cols=98 Identities=18% Similarity=0.239 Sum_probs=77.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
..++.+|||||||+|.++..+++. +..+|+|+|+|+ |++.|+++.. .++++++|+.+ ++++++||+|++..
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~-~~~~~sfD~V~~~~ 113 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------NINIIQGSLFD-PFKDNFFDLVLTKG 113 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------CCcEEEeeccC-CCCCCCEEEEEECC
Confidence 346778999999999999999885 566999999999 9999987642 36788899887 66678999999977
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+.+++ ....+..++.++.+++ ++.++.
T Consensus 114 vL~hl-~p~~~~~~l~el~r~~--~~~v~i 140 (204)
T TIGR03587 114 VLIHI-NPDNLPTAYRELYRCS--NRYILI 140 (204)
T ss_pred hhhhC-CHHHHHHHHHHHHhhc--CcEEEE
Confidence 65554 3456778888888887 345543
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-11 Score=115.32 Aligned_cols=106 Identities=13% Similarity=0.150 Sum_probs=83.6
Q ss_pred CCCEEEEEcCCCcHH-HHHHHH--cCCCeEEEEechH-HHHHHHHHHHH-cCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 122 KDKVVLDVGAGTGIL-SLFCAK--AGAAHVYAVECSQ-MANMAKQIVEA-NGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l-~~~la~--~g~~~V~~vD~s~-~~~~a~~~~~~-~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
++++|+|||||.|.+ ++.+++ .+..+++++|+++ +++.|++.+.. .++.++++|..+|+.+.....+.||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 778999999997744 444443 3456899999999 99999999965 788889999999998864334789999996
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
.+.+ . .......++..+.+.|+|||.++...
T Consensus 203 ALi~-~-dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 ALVG-M-DKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cccc-c-ccccHHHHHHHHHHhcCCCcEEEEec
Confidence 3211 1 12567899999999999999998644
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-11 Score=111.98 Aligned_cols=102 Identities=23% Similarity=0.237 Sum_probs=79.2
Q ss_pred ccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc----cCCCCce
Q 015534 117 NKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI----ELPVTKV 190 (405)
Q Consensus 117 ~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~ 190 (405)
.....++.+|||+|||+|.++..+++. +..+|+|+|+++ |++.+.+++... .++.++.+|+... .++ ++|
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~-~~~ 142 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVV-EKV 142 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhcc-ccC
Confidence 356778999999999999999999994 345899999999 999887776653 3589999998752 223 579
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+|+++.. .......++..+.++|||||.++.
T Consensus 143 D~i~~d~~-----~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 143 DVIYQDVA-----QPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred CEEEECCC-----ChhHHHHHHHHHHHhcCCCcEEEE
Confidence 99997532 112234567899999999999885
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-11 Score=108.48 Aligned_cols=105 Identities=26% Similarity=0.307 Sum_probs=83.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCc-EEEEEcccccccCCCCceeEEEEccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNV-ITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
.++.+|||+|||+|.++..+++.+ .+|+++|.|+ +++.+++++..+++.++ +.++++|+.+.. ...+||+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF-RGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc-cccCceEEEECCC
Confidence 577899999999999999999985 5999999999 99999999998887644 889999987643 3358999999753
Q ss_pred ccc--------------c----cChhhHHHHHHHHHhcccCCcEEEe
Q 015534 199 GYF--------------L----LFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 199 ~~~--------------l----~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
... + .+...+..++..+.++|||||.+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~ 146 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILL 146 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEE
Confidence 211 0 0122356788999999999998874
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-11 Score=111.01 Aligned_cols=103 Identities=21% Similarity=0.191 Sum_probs=80.9
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (405)
+.......++.+|||+|||+|.++..+++.+ .+|+++|+++ +++.|++++...++.+ ++++.+|..+...+.++||+
T Consensus 70 l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~ 147 (212)
T PRK00312 70 MTELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGWKGWPAYAPFDR 147 (212)
T ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcccCCCcCCCcCE
Confidence 3334556788999999999999999888874 4999999999 9999999999988854 99999998654333478999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|++... . ..+...+.+.|+|||+++.
T Consensus 148 I~~~~~---~------~~~~~~l~~~L~~gG~lv~ 173 (212)
T PRK00312 148 ILVTAA---A------PEIPRALLEQLKEGGILVA 173 (212)
T ss_pred EEEccC---c------hhhhHHHHHhcCCCcEEEE
Confidence 998532 1 1223456689999999874
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-11 Score=117.37 Aligned_cols=116 Identities=15% Similarity=0.130 Sum_probs=90.8
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc
Q 015534 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (405)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (405)
...+.+.....++.+|||||||+|.++..+++. +..+++++|..++++.+++++...++.++++++.+|+.+.+++ .
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~--~ 215 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP--E 215 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC--C
Confidence 344444455667789999999999999999985 4569999998339999999999999988999999999876554 3
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+|+|++..+.+.. .......+++.+.+.|+|||+++..+
T Consensus 216 ~D~v~~~~~lh~~-~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 216 ADAVLFCRILYSA-NEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred CCEEEeEhhhhcC-ChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 7998864432221 23445688999999999999998654
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.8e-12 Score=126.40 Aligned_cols=108 Identities=21% Similarity=0.359 Sum_probs=85.6
Q ss_pred ccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc--ccCCCCceeEE
Q 015534 117 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE--IELPVTKVDII 193 (405)
Q Consensus 117 ~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~D~I 193 (405)
.....++.+|||||||+|.++..+++.+ .+|+|+|+++ |++.+++.. +...+++++++|+.. ++++.++||+|
T Consensus 32 ~l~~~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~~~~~~~~~fD~I 107 (475)
T PLN02336 32 LLPPYEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSPDLNISDGSVDLI 107 (475)
T ss_pred hcCccCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHh---ccCCceEEEEecccccccCCCCCCEEEE
Confidence 3444567899999999999999999984 5999999999 998876532 223569999999964 45666899999
Q ss_pred EEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+++.+.+++. ...+..++..+.++|||||++++..
T Consensus 108 ~~~~~l~~l~-~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 108 FSNWLLMYLS-DKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred ehhhhHHhCC-HHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 9987655553 3456789999999999999998754
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-11 Score=113.09 Aligned_cols=112 Identities=24% Similarity=0.232 Sum_probs=86.7
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc
Q 015534 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (405)
Q Consensus 112 ~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (405)
+.+.++.....+.+|||+|||.|.+++.+++. +..+|+-+|+|. .++.|++++..|++.+. .++..|..+-. . ++
T Consensus 148 ~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~v-~-~k 224 (300)
T COG2813 148 RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEPV-E-GK 224 (300)
T ss_pred HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEecccccc-c-cc
Confidence 44555555666669999999999999999994 567999999999 99999999999998653 66666665443 3 49
Q ss_pred eeEEEEccccccccCh--hhHHHHHHHHHhcccCCcEEE
Q 015534 190 VDIIISEWMGYFLLFE--NMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~li 226 (405)
||+|+||+..+-.... .....++....+.|++||.+.
T Consensus 225 fd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~ 263 (300)
T COG2813 225 FDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELW 263 (300)
T ss_pred ccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEE
Confidence 9999999864422111 112388899999999999865
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-11 Score=114.69 Aligned_cols=125 Identities=24% Similarity=0.293 Sum_probs=93.1
Q ss_pred hhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEE
Q 015534 100 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK 177 (405)
Q Consensus 100 ~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~ 177 (405)
.+..+..++.+.+.+.......++.+|||+|||+|.++..+++. +..+|+|+|+|+ +++.|++++. .....+++++.
T Consensus 86 ~lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~ 164 (275)
T PRK09328 86 VLIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQ 164 (275)
T ss_pred ceeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEE
Confidence 33445556667766664445567789999999999999999985 356999999999 9999999988 34446799999
Q ss_pred cccccccCCCCceeEEEEcccccccc------------------------ChhhHHHHHHHHHhcccCCcEEEe
Q 015534 178 GKIEEIELPVTKVDIIISEWMGYFLL------------------------FENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 178 ~d~~~~~~~~~~~D~Iv~~~~~~~l~------------------------~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|+.+.. +.++||+|++++. +.-. +......++..+.++|+|||.++.
T Consensus 165 ~d~~~~~-~~~~fD~Iv~npP-y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~ 236 (275)
T PRK09328 165 GDWFEPL-PGGRFDLIVSNPP-YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL 236 (275)
T ss_pred ccccCcC-CCCceeEEEECCC-cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 9985532 2478999999753 2110 012235677888899999999885
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-11 Score=115.81 Aligned_cols=127 Identities=25% Similarity=0.337 Sum_probs=92.8
Q ss_pred hHHhhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEE
Q 015534 97 HEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVIT 174 (405)
Q Consensus 97 ~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~ 174 (405)
....+-++..++.+.+.+......... +|||+|||+|.+++.+++.. ...|+|+|+|+ +++.|++++..+++ .++.
T Consensus 86 ~~~vliPr~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~ 163 (280)
T COG2890 86 DEGVLIPRPDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVL 163 (280)
T ss_pred CCCceecCCchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEE
Confidence 334555666777777765422222222 89999999999999999954 45999999999 99999999999998 5677
Q ss_pred EEEcccccccCCCCceeEEEEccccccccC-----------h------------hhHHHHHHHHHhcccCCcEEEec
Q 015534 175 VLKGKIEEIELPVTKVDIIISEWMGYFLLF-----------E------------NMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 175 ~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~-----------~------------~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
++.+|+.+- .. ++||+||+|+. |.-.. + .....++..+.+.|+|||.++..
T Consensus 164 ~~~~dlf~~-~~-~~fDlIVsNPP-Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 164 VVQSDLFEP-LR-GKFDLIVSNPP-YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred EEeeecccc-cC-CceeEEEeCCC-CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 777766543 22 59999999873 32211 1 12357778888999999988753
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.6e-11 Score=112.37 Aligned_cols=117 Identities=26% Similarity=0.300 Sum_probs=87.9
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (405)
...+...+..... ..+.+|||+|||+|.++..+++. +..+|+|+|+++ +++.|++++..+++. +++++.+|+.+.
T Consensus 73 ~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~- 149 (251)
T TIGR03534 73 TEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEP- 149 (251)
T ss_pred hHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhcc-
Confidence 3344444443322 34568999999999999999984 456999999999 999999999998885 699999999763
Q ss_pred CCCCceeEEEEccccccccC------------h------------hhHHHHHHHHHhcccCCcEEEe
Q 015534 185 LPVTKVDIIISEWMGYFLLF------------E------------NMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~------------~------------~~~~~~l~~~~~~LkpgG~lip 227 (405)
++.++||+|++++. +.... + .....++..+.++|+|||.++.
T Consensus 150 ~~~~~fD~Vi~npP-y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~ 215 (251)
T TIGR03534 150 LPGGKFDLIVSNPP-YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLL 215 (251)
T ss_pred CcCCceeEEEECCC-CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEE
Confidence 44589999999864 21100 0 1124678889999999999875
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.8e-12 Score=110.45 Aligned_cols=114 Identities=17% Similarity=0.171 Sum_probs=89.6
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (405)
+.-..+.+. .....+..+|.|||||+|..+..+++ .+...++|+|.|+ |++.|+++. .+++|..+|+.++.
T Consensus 16 tRPa~dLla-~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~ 88 (257)
T COG4106 16 TRPARDLLA-RVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWK 88 (257)
T ss_pred cCcHHHHHh-hCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcC
Confidence 333344333 35667778999999999999999999 6778999999999 999997764 34899999999997
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCce
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
.+ ...|+|+++.+...+ ++-..++..+...|.|||++-.+...
T Consensus 89 p~-~~~dllfaNAvlqWl---pdH~~ll~rL~~~L~Pgg~LAVQmPd 131 (257)
T COG4106 89 PE-QPTDLLFANAVLQWL---PDHPELLPRLVSQLAPGGVLAVQMPD 131 (257)
T ss_pred CC-Cccchhhhhhhhhhc---cccHHHHHHHHHhhCCCceEEEECCC
Confidence 54 899999998775555 44456777777899999998765443
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.7e-11 Score=109.52 Aligned_cols=101 Identities=22% Similarity=0.158 Sum_probs=80.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCC--------------CCcEEEEEcccccccC
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF--------------SNVITVLKGKIEEIEL 185 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~--------------~~~i~~~~~d~~~~~~ 185 (405)
.++.+|||+|||.|..+..||+.|. +|+|||+|+ +++.+.+ ++++ ..+|++.++|+.++..
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCCc
Confidence 4667999999999999999999988 899999999 9987643 2322 2568999999998853
Q ss_pred C-CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 186 P-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 186 ~-~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
. .+.||+|+...+..++ .......++..+.++|+|||.++
T Consensus 112 ~~~~~fd~v~D~~~~~~l-~~~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 112 ADLADVDAVYDRAALIAL-PEEMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred ccCCCeeEEEehHhHhhC-CHHHHHHHHHHHHHHcCCCCeEE
Confidence 3 2589999976543333 55677889999999999999744
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.5e-12 Score=131.81 Aligned_cols=106 Identities=20% Similarity=0.154 Sum_probs=87.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCC-CcEEEEEcccccccC-CCCceeEEEEccc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIEL-PVTKVDIIISEWM 198 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~-~~~~~D~Iv~~~~ 198 (405)
++++|||+|||+|.+++.+++.|+++|+++|+|+ +++.|++++..|++. ++++++++|+.++.. ..++||+||+++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 5789999999999999999999888999999999 999999999999996 689999999876531 1368999999874
Q ss_pred cccccC---------hhhHHHHHHHHHhcccCCcEEEec
Q 015534 199 GYFLLF---------ENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 199 ~~~l~~---------~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
++... ......++..+.++|+|||.++.+
T Consensus 618 -~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 618 -TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred -CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 22211 223466788888999999998864
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-11 Score=108.04 Aligned_cols=103 Identities=22% Similarity=0.231 Sum_probs=82.9
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (405)
+.+.+...++.+|||||||+|..+..+++. +.+|+++|..+ .++.|++++...|+.+ |.++++|...-..+..+||.
T Consensus 64 m~~~L~~~~g~~VLEIGtGsGY~aAvla~l-~~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~gDG~~G~~~~aPyD~ 141 (209)
T COG2518 64 MLQLLELKPGDRVLEIGTGSGYQAAVLARL-VGRVVSIERIEELAEQARRNLETLGYEN-VTVRHGDGSKGWPEEAPYDR 141 (209)
T ss_pred HHHHhCCCCCCeEEEECCCchHHHHHHHHH-hCeEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEECCcccCCCCCCCcCE
Confidence 344466789999999999999999999997 33999999999 9999999999999965 99999999876555589999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+...- . +..++.+ .+.||+||+++.
T Consensus 142 I~Vtaa---a--~~vP~~L----l~QL~~gGrlv~ 167 (209)
T COG2518 142 IIVTAA---A--PEVPEAL----LDQLKPGGRLVI 167 (209)
T ss_pred EEEeec---c--CCCCHHH----HHhcccCCEEEE
Confidence 997432 1 1222333 367899999763
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.5e-11 Score=107.79 Aligned_cols=104 Identities=18% Similarity=0.233 Sum_probs=80.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEEEccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWM 198 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Iv~~~~ 198 (405)
.++.+|||+|||+|.+++.++..++.+|+++|.++ +++.|+++++.+++. +++++++|+.+.. ...++||+|++++.
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 46779999999999999976666678999999999 999999999999874 6999999997643 12357999999985
Q ss_pred cccccChhhHHHHHHHHHh--cccCCcEEEecC
Q 015534 199 GYFLLFENMLNTVLYARDK--WLVDDGIVLPDK 229 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~--~LkpgG~lip~~ 229 (405)
|. .+....++..+.. +|+|+|+++.+.
T Consensus 131 -y~---~g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 131 -FR---KGLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred -CC---CChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 21 2344455554443 478888877543
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-11 Score=113.06 Aligned_cols=105 Identities=17% Similarity=0.196 Sum_probs=86.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--C----CCCce
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L----PVTKV 190 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~----~~~~~ 190 (405)
..++++|||||||+|..++.+++. +..+|+++|+++ +++.|+++++.+++.++++++.+|+.+.. + +.++|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 356789999999999988888873 356999999999 99999999999999989999999997752 1 13689
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCc
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
|+|+.+.- .+....++..+.++|+|||.++....
T Consensus 146 D~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 146 DFAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred CEEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 99998531 24556778888899999999987653
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.5e-11 Score=102.99 Aligned_cols=80 Identities=28% Similarity=0.333 Sum_probs=70.5
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (405)
+........|++|+|+|||||.+++.++-.|+.+|+|+|+++ ++++++++..+. ..+++|+.+|+.++. .++|.
T Consensus 37 ~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l--~g~v~f~~~dv~~~~---~~~dt 111 (198)
T COG2263 37 VAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL--LGDVEFVVADVSDFR---GKFDT 111 (198)
T ss_pred HHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh--CCceEEEEcchhhcC---Cccce
Confidence 333466778999999999999999999999999999999999 999999999983 367999999999986 67999
Q ss_pred EEEccc
Q 015534 193 IISEWM 198 (405)
Q Consensus 193 Iv~~~~ 198 (405)
++.|+.
T Consensus 112 vimNPP 117 (198)
T COG2263 112 VIMNPP 117 (198)
T ss_pred EEECCC
Confidence 999863
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.3e-12 Score=112.79 Aligned_cols=145 Identities=19% Similarity=0.202 Sum_probs=100.5
Q ss_pred ccccccccCchhhhH-HhhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-C--CeEEEEechH-HHH
Q 015534 84 ADYYFDSYSHFGIHE-EMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG-A--AHVYAVECSQ-MAN 158 (405)
Q Consensus 84 ~~~~~~~y~~~~~~~-~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g-~--~~V~~vD~s~-~~~ 158 (405)
...||+.+. ..|. .+++|+.....-...+.......++ +||+||||.|.....+.+.. . -+|+++|.|+ +++
T Consensus 35 ~~k~wD~fy--~~~~~rFfkdR~wL~~Efpel~~~~~~~~~-~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~ 111 (264)
T KOG2361|consen 35 ASKYWDTFY--KIHENRFFKDRNWLLREFPELLPVDEKSAE-TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIE 111 (264)
T ss_pred hhhhhhhhh--hhccccccchhHHHHHhhHHhhCccccChh-hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHH
Confidence 367887772 2233 3566665544333444332222222 89999999999999999842 2 5899999999 999
Q ss_pred HHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCceeEE
Q 015534 159 MAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYL 234 (405)
Q Consensus 159 ~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (405)
..+++...+. .++.....|+..-. ...+++|+|++..+...+ +.......+..+.++|||||.+++.++..|-
T Consensus 112 ~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi-~pek~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 112 LVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAI-HPEKMQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred HHHhccccch--hhhcccceeccchhccCCCCcCccceEEEEEEEecc-ChHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence 9988876654 45665555654432 336899999986655544 4556678999999999999999987765543
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.6e-11 Score=107.87 Aligned_cols=105 Identities=24% Similarity=0.301 Sum_probs=93.5
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHH-cC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (405)
|.....+.+|.+|||.|.|+|.++..++. .| ..+|+.+|+.+ .++.|++++...++.+++++..+|+.+...+ ..|
T Consensus 86 I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~-~~v 164 (256)
T COG2519 86 IVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE-EDV 164 (256)
T ss_pred HHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc-ccc
Confidence 44557789999999999999999999997 33 47999999999 9999999999999998899999999998877 599
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+|+.++ +++-.++..+...|+|||.++.
T Consensus 165 Dav~LDm--------p~PW~~le~~~~~Lkpgg~~~~ 193 (256)
T COG2519 165 DAVFLDL--------PDPWNVLEHVSDALKPGGVVVV 193 (256)
T ss_pred CEEEEcC--------CChHHHHHHHHHHhCCCcEEEE
Confidence 9999764 4667889999999999999874
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.28 E-value=5e-11 Score=110.28 Aligned_cols=119 Identities=20% Similarity=0.210 Sum_probs=84.8
Q ss_pred HhHHHHHHHHHhccC-CCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccc
Q 015534 105 VRTKSYQNVIYQNKF-LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIE 181 (405)
Q Consensus 105 ~r~~~~~~~i~~~~~-~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~ 181 (405)
..++.+.+.+..... ...+.+|||+|||+|.+++.+++ .+..+|+|+|+|+ +++.|++++..++ ++++++|+.
T Consensus 68 ~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~ 143 (251)
T TIGR03704 68 RRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLY 143 (251)
T ss_pred ccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeech
Confidence 344555555443222 12345899999999999999987 4445999999999 9999999998876 478899987
Q ss_pred cccC--CCCceeEEEEcccccccc------------C------------hhhHHHHHHHHHhcccCCcEEEec
Q 015534 182 EIEL--PVTKVDIIISEWMGYFLL------------F------------ENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 182 ~~~~--~~~~~D~Iv~~~~~~~l~------------~------------~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+... ..++||+|++++. |.-. + ...+..++..+.++|+|||+++..
T Consensus 144 ~~l~~~~~~~fDlVv~NPP-y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 144 DALPTALRGRVDILAANAP-YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred hhcchhcCCCEeEEEECCC-CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 6421 1257999999974 2210 0 012357778888999999998853
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.9e-11 Score=115.20 Aligned_cols=107 Identities=15% Similarity=0.174 Sum_probs=85.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc--cCCCCceeEEEEc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--ELPVTKVDIIISE 196 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~Iv~~ 196 (405)
..+..+||||||+|.++..+|+ .+...++|+|+++ +++.|.+++..+++. ++.++++|+..+ .++++++|.|++.
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~~~~s~D~I~ln 199 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELLPSNSVEKIFVH 199 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhCCCCceeEEEEe
Confidence 4567999999999999999998 4556999999999 999999999999985 499999999765 3567899999986
Q ss_pred cccccccCh-h--hHHHHHHHHHhcccCCcEEEec
Q 015534 197 WMGYFLLFE-N--MLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 197 ~~~~~l~~~-~--~~~~~l~~~~~~LkpgG~lip~ 228 (405)
....+.-.. . ..+.++..+.++|+|||.+...
T Consensus 200 FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 200 FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred CCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 432111000 0 1267899999999999998753
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.6e-11 Score=112.89 Aligned_cols=108 Identities=18% Similarity=0.183 Sum_probs=83.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEEEcc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEW 197 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Iv~~~ 197 (405)
.++++|||||||+|.++..+++ .+..+|+++|+++ +++.|++++...+..++++++.+|..++. ...++||+|+++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 3567999999999999999887 5567999999999 99999999876555568999999987653 2236899999875
Q ss_pred cccc-ccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 198 MGYF-LLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 198 ~~~~-l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+... ....-....++..+.+.|+|||+++.+
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 3211 100012368899999999999999863
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.9e-11 Score=108.54 Aligned_cols=102 Identities=23% Similarity=0.229 Sum_probs=79.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
..++.+|||||||+|.++..+++.+. +|+|+|+|+ |++.|++++...+..+++.+..+|+.. ..++||+|++..+
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~fD~v~~~~~ 136 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LLGRFDTVVCLDV 136 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---ccCCcCEEEEcch
Confidence 35678999999999999999999876 799999999 999999999888876679999999543 2478999998543
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
.++. ..+.+..++..+.+.+++++.+.
T Consensus 137 l~~~-~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 137 LIHY-PQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred hhcC-CHHHHHHHHHHHHhhcCCeEEEE
Confidence 2222 23456778888877765555443
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.4e-11 Score=114.14 Aligned_cols=91 Identities=19% Similarity=0.255 Sum_probs=73.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C---CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-G---AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g---~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (405)
.++.+|||+|||+|.++..+++. + ...|+|+|+|+ |++.|+++. .++++..+|+.++++++++||+|++
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~ 157 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIR 157 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEE
Confidence 35578999999999999988874 2 23799999999 999997652 2488999999999888889999998
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
... +..+.++.|+|||||.++.
T Consensus 158 ~~~----------~~~~~e~~rvLkpgG~li~ 179 (272)
T PRK11088 158 IYA----------PCKAEELARVVKPGGIVIT 179 (272)
T ss_pred ecC----------CCCHHHHHhhccCCCEEEE
Confidence 421 1234678899999999984
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.4e-11 Score=111.03 Aligned_cols=113 Identities=16% Similarity=0.040 Sum_probs=87.7
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 194 (405)
....++.+|||+|||+|..+..+++. + ...|+|+|+++ +++.++++++.+++. ++++++.|...+....+.||+|+
T Consensus 67 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~fD~Vl 145 (264)
T TIGR00446 67 LEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGAAVPKFDAIL 145 (264)
T ss_pred hCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhhhccCCCEEE
Confidence 34568899999999999999998884 2 35899999999 999999999999985 59999999987654446799999
Q ss_pred Eccccccc------------cChh-------hHHHHHHHHHhcccCCcEEEecCce
Q 015534 195 SEWMGYFL------------LFEN-------MLNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 195 ~~~~~~~l------------~~~~-------~~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
+++..+.. ..+. ....++..+.++|||||+++.++++
T Consensus 146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 86532211 0111 1235888889999999999865544
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.8e-11 Score=111.01 Aligned_cols=96 Identities=19% Similarity=0.203 Sum_probs=73.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc----C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEE
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKA----G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~----g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~I 193 (405)
..++.+|||||||+|.++..+++. | ..+|+|+|+|+ |++.|+++....+ +++...+...++.++++||+|
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l~~~~~~fD~V 133 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDELVAEGERFDVV 133 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEecccccccCCCccEE
Confidence 356789999999999998888762 3 24899999999 9999988765433 566666666666566899999
Q ss_pred EEccccccccChhhHHHHHHHHHhccc
Q 015534 194 ISEWMGYFLLFENMLNTVLYARDKWLV 220 (405)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~Lk 220 (405)
+++.+.+++. ......++.++.++++
T Consensus 134 ~~~~~lhh~~-d~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 134 TSNHFLHHLD-DAEVVRLLADSAALAR 159 (232)
T ss_pred EECCeeecCC-hHHHHHHHHHHHHhcC
Confidence 9986655443 2345689999999988
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.7e-11 Score=106.04 Aligned_cols=97 Identities=19% Similarity=0.231 Sum_probs=73.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEccccccc--------CCCCc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------LPVTK 189 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~ 189 (405)
..++.+|||||||+|.++..+++. + ..+|+|||+++|. +++ .++++++|+.+.. +..++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----------~~~-~v~~i~~D~~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----------PIV-GVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----------CCC-CcEEEecCCCChHHHHHHHHHhCCCC
Confidence 567889999999999999999885 3 3599999999831 222 3899999998853 44578
Q ss_pred eeEEEEccccccccChh--------hHHHHHHHHHhcccCCcEEEe
Q 015534 190 VDIIISEWMGYFLLFEN--------MLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~--------~~~~~l~~~~~~LkpgG~lip 227 (405)
||+|+|++..++..... ....++..+.++|+|||.++.
T Consensus 118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 99999976433322110 124678899999999999884
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=7e-11 Score=117.86 Aligned_cols=112 Identities=18% Similarity=0.084 Sum_probs=87.0
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCC-CeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDII 193 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~-~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~I 193 (405)
....++.+|||+|||+|..+..+++.+. .+|+|+|+++ +++.+++++..+|+. ++++++|+.++. ++.++||.|
T Consensus 240 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~V 317 (427)
T PRK10901 240 LAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQWWDGQPFDRI 317 (427)
T ss_pred cCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhhcccCCCCEE
Confidence 3456889999999999999999998643 5999999999 999999999999874 789999998754 234689999
Q ss_pred EEccccccc------------cChhh-------HHHHHHHHHhcccCCcEEEecCce
Q 015534 194 ISEWMGYFL------------LFENM-------LNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 194 v~~~~~~~l------------~~~~~-------~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
++++..... ..+.. ...++..+.++|||||.++.++++
T Consensus 318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 987532211 11111 246788889999999999966543
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-10 Score=111.37 Aligned_cols=102 Identities=24% Similarity=0.204 Sum_probs=79.2
Q ss_pred hccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015534 116 QNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (405)
Q Consensus 116 ~~~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (405)
+.....++.+|||||||+|.++..+++. + ..+|+++|+++ +++.|++++..+++ ++++++.+|..+.....++||+
T Consensus 74 ~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~~~~fD~ 152 (322)
T PRK13943 74 EWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPEFAPYDV 152 (322)
T ss_pred HhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccccCCccE
Confidence 3345668889999999999999999984 3 24799999999 99999999999988 4699999998776544468999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|++.. .+ . .+...+.+.|+|||+++.
T Consensus 153 Ii~~~---g~---~---~ip~~~~~~LkpgG~Lvv 178 (322)
T PRK13943 153 IFVTV---GV---D---EVPETWFTQLKEGGRVIV 178 (322)
T ss_pred EEECC---ch---H---HhHHHHHHhcCCCCEEEE
Confidence 99842 11 1 122345678999998764
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-10 Score=111.38 Aligned_cols=107 Identities=11% Similarity=-0.006 Sum_probs=77.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC--CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc-cCCCC----ceeE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVT----KVDI 192 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~----~~D~ 192 (405)
.++.+|||+|||+|..+..+++.. ..+|+++|+|+ |++.|++++......-++.++++|+.+. .++.. ...+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 466799999999999999999864 35999999999 9999999887643223578899999873 34322 1223
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+++... ...........+++.+.+.|+|||.+++.
T Consensus 142 ~~~gs~-~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 142 FFPGST-IGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEeccc-ccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 333221 12234556778999999999999998853
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.24 E-value=3e-11 Score=108.10 Aligned_cols=104 Identities=21% Similarity=0.219 Sum_probs=76.8
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CC-CeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~-~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (405)
.+.+.....+|.+|||||||+|..+..+++. |. .+|+++|..+ +++.|++++...++. +++++++|...-.....+
T Consensus 63 ~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~~~ap 141 (209)
T PF01135_consen 63 RMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWPEEAP 141 (209)
T ss_dssp HHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTGGG-S
T ss_pred HHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhccccCCC
Confidence 3444466889999999999999999999994 43 3799999999 999999999999885 699999998765444578
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
||.|++... . +..+.. +.+.|++||+++
T Consensus 142 fD~I~v~~a---~--~~ip~~----l~~qL~~gGrLV 169 (209)
T PF01135_consen 142 FDRIIVTAA---V--PEIPEA----LLEQLKPGGRLV 169 (209)
T ss_dssp EEEEEESSB---B--SS--HH----HHHTEEEEEEEE
T ss_pred cCEEEEeec---c--chHHHH----HHHhcCCCcEEE
Confidence 999998532 2 122222 446789999987
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.9e-11 Score=107.71 Aligned_cols=101 Identities=20% Similarity=0.166 Sum_probs=78.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc----CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKA----GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~----g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
.+.+|||+|||+|.+++.+++. +..+|+|+|+++ +++.|+++.. ++.++.+|+....+. ++||+||+|
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~~-~~FDlIIsN 121 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEFD-TLFDMAISN 121 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhccccc-CCccEEEEC
Confidence 3679999999999999998874 345899999999 9999997752 378999999876654 799999999
Q ss_pred ccccccc---------ChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 197 WMGYFLL---------FENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 197 ~~~~~l~---------~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+...-+. +......++....+++++|+.|+|..
T Consensus 122 PPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~ 163 (241)
T PHA03412 122 PPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQM 163 (241)
T ss_pred CCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcc
Confidence 7422111 01124567788888999999988875
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.3e-11 Score=116.99 Aligned_cols=114 Identities=15% Similarity=0.070 Sum_probs=86.3
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC--CCCceeEE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL--PVTKVDII 193 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~D~I 193 (405)
....+|.+|||+|||+|..+..+++ .+..+|+|+|+++ +++.+++++++.|+...+++..+|...... +.++||.|
T Consensus 234 L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~V 313 (426)
T TIGR00563 234 LAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRI 313 (426)
T ss_pred hCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEE
Confidence 3456889999999999999999998 4446999999999 999999999999986445557777765443 34789999
Q ss_pred EEcccccc--cc-Chh----------------hHHHHHHHHHhcccCCcEEEecCce
Q 015534 194 ISEWMGYF--LL-FEN----------------MLNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 194 v~~~~~~~--l~-~~~----------------~~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
+++..... .. ..+ ....++..+.++|||||.++.++++
T Consensus 314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 98642211 11 111 1357888899999999999976654
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.8e-11 Score=117.36 Aligned_cols=113 Identities=17% Similarity=0.104 Sum_probs=88.5
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCce
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKV 190 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~ 190 (405)
....+|.+|||+|||+|..+..+++. + ..+|+|+|+++ +++.+++++...|+. +++++++|+..+. ...++|
T Consensus 248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~~~f 326 (434)
T PRK14901 248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKPQWRGYF 326 (434)
T ss_pred hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccccccccccC
Confidence 44567899999999999999999884 2 45999999999 999999999999986 4999999998775 234689
Q ss_pred eEEEEccccccc----cCh--------hh-------HHHHHHHHHhcccCCcEEEecCce
Q 015534 191 DIIISEWMGYFL----LFE--------NM-------LNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 191 D~Iv~~~~~~~l----~~~--------~~-------~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
|.|+++...+.. .++ .. ...++..+.++|||||+++.++++
T Consensus 327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 999986432211 111 11 357788999999999999866544
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.1e-11 Score=102.46 Aligned_cols=106 Identities=22% Similarity=0.289 Sum_probs=79.1
Q ss_pred HhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEE
Q 015534 115 YQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193 (405)
Q Consensus 115 ~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~I 193 (405)
.......++.+|||||||+|.++..+++. ..+|+++|+++ +++.+++++... ++++++++|+.++.++...||.|
T Consensus 6 ~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~~---~~v~ii~~D~~~~~~~~~~~d~v 81 (169)
T smart00650 6 VRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAAA---DNLTVIHGDALKFDLPKLQPYKV 81 (169)
T ss_pred HHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhccC---CCEEEEECchhcCCccccCCCEE
Confidence 33345567789999999999999999998 46999999999 999999887542 46999999999988775679999
Q ss_pred EEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
++++. +.. ..+.+..++.. ..+.++|.++.+
T Consensus 82 i~n~P-y~~-~~~~i~~~l~~--~~~~~~~~l~~q 112 (169)
T smart00650 82 VGNLP-YNI-STPILFKLLEE--PPAFRDAVLMVQ 112 (169)
T ss_pred EECCC-ccc-HHHHHHHHHhc--CCCcceEEEEEE
Confidence 99864 332 22334444332 224467777643
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1e-10 Score=105.03 Aligned_cols=128 Identities=22% Similarity=0.243 Sum_probs=96.5
Q ss_pred hhcCHHhHHHHHHHHHhccC---CCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEE
Q 015534 100 MLKDVVRTKSYQNVIYQNKF---LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVIT 174 (405)
Q Consensus 100 ~l~d~~r~~~~~~~i~~~~~---~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~ 174 (405)
.+-.+..++.+.+++..... ...+..+||+|||+|.+++.++. .+...|+|+|.|+ ++..|.+|+.++++.+++.
T Consensus 123 VlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~ 202 (328)
T KOG2904|consen 123 VLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIE 202 (328)
T ss_pred eeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceE
Confidence 45566778888877765432 23455899999999999999988 6777999999999 9999999999999999999
Q ss_pred EEEccccccc-----CCCCceeEEEEccccccccC------------h------------hhHHHHHHHHHhcccCCcEE
Q 015534 175 VLKGKIEEIE-----LPVTKVDIIISEWMGYFLLF------------E------------NMLNTVLYARDKWLVDDGIV 225 (405)
Q Consensus 175 ~~~~d~~~~~-----~~~~~~D~Iv~~~~~~~l~~------------~------------~~~~~~l~~~~~~LkpgG~l 225 (405)
+++-+++.-. +..+++|+++||+. |.-.. | ..+-.++.-+.|.|+|||.+
T Consensus 203 v~~~~me~d~~~~~~l~~~~~dllvsNPP-YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~ 281 (328)
T KOG2904|consen 203 VIHNIMESDASDEHPLLEGKIDLLVSNPP-YIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFE 281 (328)
T ss_pred EEecccccccccccccccCceeEEecCCC-cccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeE
Confidence 9987765432 33589999999873 32111 1 11234555667999999988
Q ss_pred Eec
Q 015534 226 LPD 228 (405)
Q Consensus 226 ip~ 228 (405)
.++
T Consensus 282 ~le 284 (328)
T KOG2904|consen 282 QLE 284 (328)
T ss_pred EEE
Confidence 754
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-10 Score=110.84 Aligned_cols=100 Identities=19% Similarity=0.191 Sum_probs=74.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCC----CCcEEEEEcccccccCCCCceeEEEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF----SNVITVLKGKIEEIELPVTKVDIIIS 195 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (405)
.++.+|||||||+|.++..+++.|. +|+|+|+|+ |++.|+++....+. ..+++|...|+.++ .++||+|+|
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEE
Confidence 3678999999999999999999875 999999999 99999999876421 13578999998765 378999998
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
..+..++. ......++..+.+ +.+||.+|
T Consensus 219 ~~vL~H~p-~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 219 LDVLIHYP-QDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred cCEEEecC-HHHHHHHHHHHHh-hcCCEEEE
Confidence 64433222 2234456666654 45666655
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-10 Score=116.29 Aligned_cols=112 Identities=20% Similarity=0.179 Sum_probs=87.3
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 194 (405)
....+|.+|||+|||+|..+..+++. +..+|+|+|+|+ +++.+++++...|+. +++++.+|+..+. +.++||+|+
T Consensus 246 l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~-~~~~fD~Vl 323 (445)
T PRK14904 246 LNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFS-PEEQPDAIL 323 (445)
T ss_pred cCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccc-cCCCCCEEE
Confidence 34567889999999999999888873 245999999999 999999999999985 6999999998875 347899999
Q ss_pred Eccccccc------------cChhh-------HHHHHHHHHhcccCCcEEEecCce
Q 015534 195 SEWMGYFL------------LFENM-------LNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 195 ~~~~~~~l------------~~~~~-------~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
++...... ..+.. ...++..+.++|||||+++.++++
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 76421111 01111 236889999999999999976544
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-10 Score=115.93 Aligned_cols=113 Identities=19% Similarity=0.120 Sum_probs=88.6
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDII 193 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~I 193 (405)
....+|.+|||+|||+|..+..+++. +..+|+|+|+++ +++.+++++.+.|+. +++++++|+..+. ...++||.|
T Consensus 233 l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~fD~V 311 (431)
T PRK14903 233 MELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQDTFDRI 311 (431)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhccCCEE
Confidence 44578899999999999999999884 346999999999 999999999999985 5999999998765 234789999
Q ss_pred EEcccccccc----Ch---------------hhHHHHHHHHHhcccCCcEEEecCce
Q 015534 194 ISEWMGYFLL----FE---------------NMLNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 194 v~~~~~~~l~----~~---------------~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
+++....... ++ .....++..+.++|||||.++.++++
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 9865322111 11 01246788889999999999876655
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-10 Score=109.66 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=83.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcC--C--CCcEEEEEccccccc-CCCCceeEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANG--F--SNVITVLKGKIEEIE-LPVTKVDII 193 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~--~--~~~i~~~~~d~~~~~-~~~~~~D~I 193 (405)
..+++||+||||+|.++..+++. +..+|++||+++ +++.|++.+...+ . .++++++.+|...+. ...++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 34679999999999999999886 678999999999 9999999886532 1 367999999997753 234789999
Q ss_pred EEccccccccChh-hHHHHHHHHHhcccCCcEEEecC
Q 015534 194 ISEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 194 v~~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+++.......... ....++..+.+.|+|||+++...
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 9975432211111 13577888999999999998654
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-10 Score=90.61 Aligned_cols=101 Identities=31% Similarity=0.354 Sum_probs=81.4
Q ss_pred EEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-CCCceeEEEEccccccc
Q 015534 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-PVTKVDIIISEWMGYFL 202 (405)
Q Consensus 125 ~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~Iv~~~~~~~l 202 (405)
+|||+|||+|.++..+++.+..+++++|.++ ++..+++.....+ ..+++++..|+.+... ..++||+|+++.+.+..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 4899999999999999885577999999999 9998886444333 3569999999988764 45789999997653321
Q ss_pred cChhhHHHHHHHHHhcccCCcEEEec
Q 015534 203 LFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 203 ~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
......++..+.+.|+|||.++..
T Consensus 80 --~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 --VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred --hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 467788899999999999999864
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-10 Score=116.38 Aligned_cols=112 Identities=17% Similarity=0.146 Sum_probs=87.4
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDI 192 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~ 192 (405)
....++.+|||+|||+|..+..+++. +..+|+|+|+++ +++.+++++..+|+.+ ++++++|+.++. ++ ++||+
T Consensus 246 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~~-~~fD~ 323 (444)
T PRK14902 246 LDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARKVHEKFA-EKFDK 323 (444)
T ss_pred hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCcccccchhc-ccCCE
Confidence 34567889999999999999999984 356999999999 9999999999999865 999999998763 33 78999
Q ss_pred EEEccccccc------------cChhh-------HHHHHHHHHhcccCCcEEEecCce
Q 015534 193 IISEWMGYFL------------LFENM-------LNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 193 Iv~~~~~~~l------------~~~~~-------~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
|++++..+.. ..+.. ...++..+.++|||||.++.++++
T Consensus 324 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 324 ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 9997532111 00111 235788889999999999865543
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.1e-10 Score=101.45 Aligned_cols=105 Identities=19% Similarity=0.174 Sum_probs=82.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--C-C-CCceeEEEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L-P-VTKVDIIIS 195 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~-~-~~~~D~Iv~ 195 (405)
..+.+|||++||+|.+++.++.+|+++|+++|.++ +++.+++++..+++.++++++.+|+.... + . ...+|+|+.
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 46789999999999999999999999999999999 99999999999998778999999996542 1 1 124899998
Q ss_pred ccccccccChhhHHHHHHHH--HhcccCCcEEEecC
Q 015534 196 EWMGYFLLFENMLNTVLYAR--DKWLVDDGIVLPDK 229 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~--~~~LkpgG~lip~~ 229 (405)
.+. |.- .....++..+ ..+|+++|.++.+.
T Consensus 128 DPP-y~~---~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 128 DPP-FFN---GALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred CcC-CCC---CcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 774 221 2233444433 35789999888654
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.1e-10 Score=123.36 Aligned_cols=136 Identities=13% Similarity=0.154 Sum_probs=98.7
Q ss_pred hhhhHHhhcCHHhHHHHHHHHHhccC-CCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCC
Q 015534 94 FGIHEEMLKDVVRTKSYQNVIYQNKF-LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFS 170 (405)
Q Consensus 94 ~~~~~~~l~d~~r~~~~~~~i~~~~~-~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~ 170 (405)
+......+-.+..++.+.+.+..... ..++.+|||+|||+|.+++.+++. +..+|+|+|+|+ +++.|++++..|+++
T Consensus 89 ~~V~p~VLIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~ 168 (1082)
T PLN02672 89 MMEIPSIFIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALD 168 (1082)
T ss_pred eeeCCCcccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcc
Confidence 34444566677778888877543211 124579999999999999999985 456999999999 999999999987542
Q ss_pred ---------------CcEEEEEcccccccCC-CCceeEEEEccccccccC------------------------------
Q 015534 171 ---------------NVITVLKGKIEEIELP-VTKVDIIISEWMGYFLLF------------------------------ 204 (405)
Q Consensus 171 ---------------~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~~~l~~------------------------------ 204 (405)
++++++++|+.+.... ..+||+||+++. |....
T Consensus 169 ~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPP-YI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~ 247 (1082)
T PLN02672 169 DDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIP-QILNPNPEAMSKLVTENASEEFLYSLSNYCALQGF 247 (1082)
T ss_pred cccccccccccccccccEEEEECchhhhccccCCceEEEEECCC-cCCCcchhhcChhhhhccccccccccCccccccCC
Confidence 4799999999765422 137999999873 32111
Q ss_pred ---h---hhHHHHHHHHHhcccCCcEEEecCc
Q 015534 205 ---E---NMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 205 ---~---~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
+ .....++....++|+|||.++.+..
T Consensus 248 ~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG 279 (1082)
T PLN02672 248 VEDQFGLGLIARAVEEGISVIKPMGIMIFNMG 279 (1082)
T ss_pred CCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 0 1125677778899999999987643
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.5e-10 Score=104.90 Aligned_cols=98 Identities=21% Similarity=0.204 Sum_probs=72.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
.+.+|||+|||+|.++..+++. +..+|+++|+++ |++.|+++. .+++++++|+.++... .+||+|++++..
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~~-~kFDlIIsNPPF 136 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFESN-EKFDVVISNPPF 136 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhccc-CCCcEEEEcCCc
Confidence 4568999999999999888774 346999999999 999998763 2488999999987644 789999998753
Q ss_pred ccccChhh-----------------HHHHHHHHHhcccCCcEEE
Q 015534 200 YFLLFENM-----------------LNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 200 ~~l~~~~~-----------------~~~~l~~~~~~LkpgG~li 226 (405)
+.+..... +..++.....+|+|+|.++
T Consensus 137 ~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~ 180 (279)
T PHA03411 137 GKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAG 180 (279)
T ss_pred cccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEE
Confidence 33221111 2345555567777777654
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-10 Score=102.83 Aligned_cols=115 Identities=18% Similarity=0.258 Sum_probs=92.4
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH-cC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEE-ccccc
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK-GKIEE 182 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~-~d~~~ 182 (405)
.-.|...+.+ ...+++|||||++.|..++++|. .+ ..+++++|.++ +++.|++++++.|+.++|+++. +|..+
T Consensus 47 ~g~~L~~L~~---~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~ 123 (219)
T COG4122 47 TGALLRLLAR---LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALD 123 (219)
T ss_pred HHHHHHHHHH---hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHH
Confidence 3345544443 34778999999999999999999 44 56999999999 9999999999999999999999 57755
Q ss_pred cc--CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCc
Q 015534 183 IE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 183 ~~--~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
.. ...++||+|+... .....+.++..+.++|+|||.++....
T Consensus 124 ~l~~~~~~~fDliFIDa------dK~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 124 VLSRLLDGSFDLVFIDA------DKADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred HHHhccCCCccEEEEeC------ChhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 43 2358999999742 235667889999999999999997653
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-10 Score=108.37 Aligned_cols=126 Identities=22% Similarity=0.231 Sum_probs=91.2
Q ss_pred HHhhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCC-CcEEE
Q 015534 98 EEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITV 175 (405)
Q Consensus 98 ~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~ 175 (405)
..++-|...+..+.... ..+++|||+-|=||.+++.++..|+.+|++||.|. +++.|++++..|+++ +++++
T Consensus 105 tGlFlDqR~nR~~v~~~------~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~ 178 (286)
T PF10672_consen 105 TGLFLDQRENRKWVRKY------AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRF 178 (286)
T ss_dssp TSS-GGGHHHHHHHHHH------CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEE
T ss_pred ceEcHHHHhhHHHHHHH------cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEE
Confidence 33445555555544332 36889999999999999999999999999999999 999999999999986 68999
Q ss_pred EEcccccccC---CCCceeEEEEccccccccC---hhhHHHHHHHHHhcccCCcEEEecC
Q 015534 176 LKGKIEEIEL---PVTKVDIIISEWMGYFLLF---ENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 176 ~~~d~~~~~~---~~~~~D~Iv~~~~~~~l~~---~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+..|+.+..- ..++||+||+++..+.-.. ..+...++..+.++|+|||.++.+.
T Consensus 179 ~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 179 IQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp EES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 9999977421 2369999999875432111 2345677888889999999988544
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.1e-10 Score=100.08 Aligned_cols=106 Identities=27% Similarity=0.411 Sum_probs=75.3
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcC--CCCcEEEEEccccccc----CCCCce
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANG--FSNVITVLKGKIEEIE----LPVTKV 190 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~----~~~~~~ 190 (405)
....++.+|||||||+|..++.+++. +..+|+..|.++.++.++.++..|+ ...++.+...|..+-. +...+|
T Consensus 41 ~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 41 PELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hhhcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 45678899999999999999999997 7889999999888899999999987 5577888888875421 234689
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
|+|++.-+ +..+...+.++..+.++|+|+|.++
T Consensus 121 D~IlasDv---~Y~~~~~~~L~~tl~~ll~~~~~vl 153 (173)
T PF10294_consen 121 DVILASDV---LYDEELFEPLVRTLKRLLKPNGKVL 153 (173)
T ss_dssp SEEEEES-----S-GGGHHHHHHHHHHHBTT-TTEE
T ss_pred CEEEEecc---cchHHHHHHHHHHHHHHhCCCCEEE
Confidence 99998543 4456788999999999999999855
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.8e-10 Score=111.63 Aligned_cols=109 Identities=22% Similarity=0.214 Sum_probs=91.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCC-CcEEEEEccccccc----CCCCceeEEEE
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIE----LPVTKVDIIIS 195 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~----~~~~~~D~Iv~ 195 (405)
.|++|||+-|=||.+++.+|..|+++|++||.|. .++.|++++..||+. +++.++++|+.++. -...+||+||.
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 4999999999999999999999999999999999 999999999999985 66899999998764 12359999999
Q ss_pred ccccccccCh-------hhHHHHHHHHHhcccCCcEEEecCce
Q 015534 196 EWMGYFLLFE-------NMLNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 196 ~~~~~~l~~~-------~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
++..+ .-+. .+...++..+.++|+|||.++.+++.
T Consensus 297 DPPsF-~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 297 DPPSF-ARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred CCccc-ccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 88533 2222 33467778888999999999976543
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=3e-10 Score=108.82 Aligned_cols=99 Identities=15% Similarity=0.161 Sum_probs=76.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-CCCceeEEEEccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-PVTKVDIIISEWM 198 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~Iv~~~~ 198 (405)
.++.+|||+|||+|.+++.+++.+ .+|+|+|+++ +++.|+++++.+++ ++++++.+|+.++.. ..++||+|++++.
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP 249 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVNPP 249 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEECCC
Confidence 356899999999999999999986 5999999999 99999999999998 569999999987642 2357999999875
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
-. +....++..+.+ ++|+++++.
T Consensus 250 r~-----G~~~~~~~~l~~-~~~~~ivyv 272 (315)
T PRK03522 250 RR-----GIGKELCDYLSQ-MAPRFILYS 272 (315)
T ss_pred CC-----CccHHHHHHHHH-cCCCeEEEE
Confidence 22 122233333323 567766553
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.7e-10 Score=105.71 Aligned_cols=105 Identities=20% Similarity=0.207 Sum_probs=87.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--C----CCCce
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L----PVTKV 190 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~----~~~~~ 190 (405)
..++++|||||+|+|..++.+++. + ..+|+++|.++ .++.|++++++.|+.++|+++.+|+.+.. + ..++|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 456789999999999999999983 2 45899999999 99999999999999989999999997642 1 13689
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCc
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
|+|+.+. .......++..+.++|+|||.++....
T Consensus 196 D~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 196 DFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred CEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 9999753 235667888888899999999987653
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.3e-10 Score=112.77 Aligned_cols=112 Identities=22% Similarity=0.170 Sum_probs=85.2
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE- 184 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 184 (405)
++.+.+.+.......++.+|||+|||+|.+++.+++.+ .+|+|+|+|+ |++.|++++..+++. +++++.+|+.+..
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l~ 359 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhhh
Confidence 44555555554555678899999999999999999985 5999999999 999999999999985 5999999997642
Q ss_pred ---CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 185 ---LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 185 ---~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+..++||+|++++.-. + ...++..+.+ ++|+++++.
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~-----g-~~~~~~~l~~-~~~~~ivyv 398 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRA-----G-AAEVMQALAK-LGPKRIVYV 398 (443)
T ss_pred hhhhhcCCCCEEEECcCCc-----C-hHHHHHHHHh-cCCCeEEEE
Confidence 2346799999987422 1 2344455544 588887664
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.1e-10 Score=104.75 Aligned_cols=107 Identities=21% Similarity=0.233 Sum_probs=82.8
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHH--cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC---
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAK--AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--- 186 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~--~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--- 186 (405)
.|.....+.+|.+|||.|+|+|.++..+++ .+..+|+..|+.+ .++.|+++++..++.+++++.+.|+....++
T Consensus 31 ~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~ 110 (247)
T PF08704_consen 31 YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEEL 110 (247)
T ss_dssp HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-
T ss_pred HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccc
Confidence 345557889999999999999999999998 3467999999999 9999999999999998999999999754332
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcc-cCCcEEEe
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWL-VDDGIVLP 227 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~L-kpgG~lip 227 (405)
...+|.|+.++. .+-.++..+.+.| +|||+++.
T Consensus 111 ~~~~DavfLDlp--------~Pw~~i~~~~~~L~~~gG~i~~ 144 (247)
T PF08704_consen 111 ESDFDAVFLDLP--------DPWEAIPHAKRALKKPGGRICC 144 (247)
T ss_dssp TTSEEEEEEESS--------SGGGGHHHHHHHE-EEEEEEEE
T ss_pred cCcccEEEEeCC--------CHHHHHHHHHHHHhcCCceEEE
Confidence 267999998653 3445667778889 89999873
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.7e-10 Score=100.92 Aligned_cols=98 Identities=21% Similarity=0.305 Sum_probs=72.2
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--------CC
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--------LP 186 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~ 186 (405)
....++.+|||+|||+|.++..+++. +..+|+++|+|+ + .. .+++++++|+.+.. .+
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHHhC
Confidence 45578899999999999999988874 345899999999 6 11 24788888987642 34
Q ss_pred CCceeEEEEcccccc-----ccCh---hhHHHHHHHHHhcccCCcEEEe
Q 015534 187 VTKVDIIISEWMGYF-----LLFE---NMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~-----l~~~---~~~~~~l~~~~~~LkpgG~lip 227 (405)
.++||+|+++...++ +.+. .....++..+.++|+|||+++.
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi 144 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVV 144 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 468999998642111 1111 1346788999999999999885
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.1e-10 Score=102.34 Aligned_cols=104 Identities=20% Similarity=0.277 Sum_probs=84.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc------CCCCcee
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTKVD 191 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~~D 191 (405)
.+.++||||||++|..++.+|+. + ..+|+.+|.++ .++.|++++...|+.++|+++.+|+.+.. .+.++||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 46679999999999999999984 3 45999999999 99999999999999999999999997642 1125899
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCc
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
+|+.+. .......++..+.++|+|||.++....
T Consensus 124 ~VFiDa------~K~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 124 FVFIDA------DKRNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp EEEEES------TGGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred EEEEcc------cccchhhHHHHHhhhccCCeEEEEccc
Confidence 999753 234566778888899999999997653
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.1e-10 Score=107.04 Aligned_cols=106 Identities=19% Similarity=0.202 Sum_probs=80.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc---------CCCCcEEEEEccccccc----CCC
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN---------GFSNVITVLKGKIEEIE----LPV 187 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~---------~~~~~i~~~~~d~~~~~----~~~ 187 (405)
++.+|||||||-|.-..-..+.+..+++|+|++. .++.|+++.... ...-...++.+|..... ++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 7889999999999888888888899999999999 999999988321 11123677888876432 222
Q ss_pred --CceeEEEEcc-ccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 188 --TKVDIIISEW-MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 188 --~~~D~Iv~~~-~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.+||+|-|-. +.|.+..+.....++..+...|+|||++|-
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIg 184 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIG 184 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 5999999965 556667788888999999999999999983
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.6e-10 Score=103.74 Aligned_cols=102 Identities=20% Similarity=0.204 Sum_probs=76.8
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc---cCCCCcee
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI---ELPVTKVD 191 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~D 191 (405)
..+.++.+|||+|||+|.++..+++. | ...|+|||+++ |.+.+.+.+... .+|.++..|+... ....+.||
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~~~vD 204 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLVPMVD 204 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcccCCCC
Confidence 45678899999999999999999994 3 45899999999 876665554432 3588899998642 22236899
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|+++.. .......++.++.++|||||.++.
T Consensus 205 vV~~Dva-----~pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 205 VIFADVA-----QPDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred EEEEeCC-----CcchHHHHHHHHHHhccCCCEEEE
Confidence 9999753 123444566778899999999886
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.8e-11 Score=107.05 Aligned_cols=99 Identities=19% Similarity=0.197 Sum_probs=76.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEcc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEW 197 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~~ 197 (405)
.+=.++||+|||||..+..+... +.+.+|+|+|. |++.|.++--. + +..+++...+. ...++||+|++.-
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~Y----D--~L~~Aea~~Fl~~~~~er~DLi~AaD 196 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGLY----D--TLYVAEAVLFLEDLTQERFDLIVAAD 196 (287)
T ss_pred CccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhccch----H--HHHHHHHHHHhhhccCCcccchhhhh
Confidence 33579999999999999999887 67999999999 99998875322 1 34455554332 3458999999854
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+ +.+-+.++.++.....+|+|||.+.++.
T Consensus 197 V---l~YlG~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 197 V---LPYLGALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred H---HHhhcchhhHHHHHHHhcCCCceEEEEe
Confidence 4 4444788899999999999999998764
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.6e-10 Score=98.49 Aligned_cols=100 Identities=18% Similarity=0.165 Sum_probs=76.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccc-ccccCCCCceeEEEEcccc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI-EEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~Iv~~~~~ 199 (405)
.+.-|||||||+|+.+..+...|. .++|+|+|+ |++.|.+.--+ -.++.+|+ +.+++++++||-+|+-...
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~GlpfrpGtFDg~ISISAv 122 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE------GDLILCDMGEGLPFRPGTFDGVISISAV 122 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh------cCeeeeecCCCCCCCCCccceEEEeeee
Confidence 467899999999999999999885 999999999 99999873221 24677777 5577888999999984322
Q ss_pred ccccC--------hhhHHHHHHHHHhcccCCcEEEec
Q 015534 200 YFLLF--------ENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 200 ~~l~~--------~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
..+.+ ...+..++..++.+|++|++.+++
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 33322 123456788899999999998753
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.2e-10 Score=100.20 Aligned_cols=108 Identities=20% Similarity=0.274 Sum_probs=77.8
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcC---------------------------
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANG--------------------------- 168 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~--------------------------- 168 (405)
.....+..+|||||.+|.++..+|+ .|...|.|+|+++ .+..|+++++..-
T Consensus 54 ~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 54 KDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred ccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence 4566788999999999999999999 7888999999999 9999999874321
Q ss_pred -------CCCcEEE-------EEcccccccCCCCceeEEEEcccc---ccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 169 -------FSNVITV-------LKGKIEEIELPVTKVDIIISEWMG---YFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 169 -------~~~~i~~-------~~~d~~~~~~~~~~~D~Iv~~~~~---~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+++++.+ ...|+. .+....||+|+|-.+. +.-.+...+..++..+.++|.|||++|.
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred cccccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 0111111 111121 1234789999993221 2223456678999999999999999984
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.2e-10 Score=99.51 Aligned_cols=105 Identities=29% Similarity=0.369 Sum_probs=80.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--C--CCCceeEEEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L--PVTKVDIIIS 195 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~--~~~~~D~Iv~ 195 (405)
.+|.+|||+-||+|.+++.++.+|+++|+.||.++ .+...+++++..+..++++++..|..... . ...+||+|++
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 58899999999999999999999999999999999 99999999999999888999999975442 1 3589999999
Q ss_pred ccccccccChhh-HHHHHHHHH--hcccCCcEEEecC
Q 015534 196 EWMGYFLLFENM-LNTVLYARD--KWLVDDGIVLPDK 229 (405)
Q Consensus 196 ~~~~~~l~~~~~-~~~~l~~~~--~~LkpgG~lip~~ 229 (405)
++. |.. .. ...++..+. .+|+++|.++.+.
T Consensus 121 DPP-Y~~---~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 121 DPP-YAK---GLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp --S-TTS---CHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred CCC-ccc---chHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 874 322 22 356666665 8899999988543
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-09 Score=98.71 Aligned_cols=105 Identities=16% Similarity=0.031 Sum_probs=82.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHH-------c----CCCCcEEEEEcccccccCC--
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-------N----GFSNVITVLKGKIEEIELP-- 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~-------~----~~~~~i~~~~~d~~~~~~~-- 186 (405)
.++.+||+.|||.|.-+.+||+.|. +|+|+|+|+ .++.+.+.... . .-...|+++++|+.++...
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 4678999999999999999999998 799999999 99887552100 0 0124699999999998632
Q ss_pred -CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 187 -VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 187 -~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.++||+|+-..+.. .+.+.+.....+.+.++|+|||.++.
T Consensus 121 ~~~~fD~VyDra~~~-Alpp~~R~~Y~~~l~~lL~pgg~lll 161 (226)
T PRK13256 121 NLPVFDIWYDRGAYI-ALPNDLRTNYAKMMLEVCSNNTQILL 161 (226)
T ss_pred ccCCcCeeeeehhHh-cCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 26899998755433 44677888999999999999999773
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-10 Score=102.79 Aligned_cols=97 Identities=21% Similarity=0.169 Sum_probs=73.2
Q ss_pred EEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccccccc
Q 015534 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLL 203 (405)
Q Consensus 125 ~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~ 203 (405)
.++|+|||+|..++.++.. .++|+|+|+|+ |++.|++...........++...++.++.-.++++|+|+|....|.
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HW-- 112 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHW-- 112 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHh--
Confidence 8999999999888888888 78999999999 9999988654433322344555555666545799999998443232
Q ss_pred ChhhHHHHHHHHHhcccCCcEEE
Q 015534 204 FENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 204 ~~~~~~~~l~~~~~~LkpgG~li 226 (405)
-+++.+...+.|+||+.|-++
T Consensus 113 --Fdle~fy~~~~rvLRk~Gg~i 133 (261)
T KOG3010|consen 113 --FDLERFYKEAYRVLRKDGGLI 133 (261)
T ss_pred --hchHHHHHHHHHHcCCCCCEE
Confidence 367899999999998877433
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-09 Score=103.79 Aligned_cols=113 Identities=19% Similarity=0.192 Sum_probs=85.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHc--CC-CCcEEEEEccccccc--CCCCceeEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEAN--GF-SNVITVLKGKIEEIE--LPVTKVDII 193 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~~--~~~~~~D~I 193 (405)
.++++||+||||.|.++..+++.+ ..+|+.||+++ +++.|++.+... ++ .++++++.+|...+. .+.++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 456899999999999999999964 57999999999 999999988653 22 258999999986653 224689999
Q ss_pred EEccccccccCh-hhHHHHHHHHHhcccCCcEEEecCceeE
Q 015534 194 ISEWMGYFLLFE-NMLNTVLYARDKWLVDDGIVLPDKASLY 233 (405)
Q Consensus 194 v~~~~~~~l~~~-~~~~~~l~~~~~~LkpgG~lip~~~~~~ 233 (405)
+++......... -.-..+++.+.+.|+|||+++.+....+
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~ 210 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMW 210 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcc
Confidence 996533211110 1235788899999999999987654433
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.6e-10 Score=99.98 Aligned_cols=91 Identities=19% Similarity=0.182 Sum_probs=69.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc-c-cCCCCceeEEEEcc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I-ELPVTKVDIIISEW 197 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~D~Iv~~~ 197 (405)
.++.+|||||||+|.++..+++.+...++|+|+++ +++.|++. +++++.+|+.+ + ++++++||+|++..
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDKSFDYVILSQ 83 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCCCcCEEEEhh
Confidence 36779999999999999998875555889999999 99888641 26788889876 3 25557899999975
Q ss_pred ccccccChhhHHHHHHHHHhcccCC
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDD 222 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~Lkpg 222 (405)
+. .+..++..+++++.+.++++
T Consensus 84 ~l---~~~~d~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 84 TL---QATRNPEEILDEMLRVGRHA 105 (194)
T ss_pred Hh---HcCcCHHHHHHHHHHhCCeE
Confidence 43 33356777888877766543
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.7e-10 Score=108.18 Aligned_cols=220 Identities=15% Similarity=0.086 Sum_probs=153.4
Q ss_pred CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccccc-ccChhhH--HHHHHHHHhccc
Q 015534 145 AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF-LLFENML--NTVLYARDKWLV 220 (405)
Q Consensus 145 ~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~-l~~~~~~--~~~l~~~~~~Lk 220 (405)
..+++-.+.++ .-.+..+++-...+.+ ++.+..=+ ..+ ++.|++.++++.-. +..-..+ --....+...+-
T Consensus 389 ~~~r~~~~l~e~~r~if~~~~~~~Klsn-~e~vp~i~---t~~-ds~~ivl~epf~~tam~PW~~L~F~Y~~~~l~~~~G 463 (636)
T KOG1501|consen 389 WPKRIQARLSERERVIFNQRLIQLKLSN-NESVPAIM---TSP-DSPDIVLAEPFVKTAMNPWNHLRFLYDVEVLKMMHG 463 (636)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcc-cccchhhh---cCC-CCCceeecchhhhhccCchhheeeeeeHHHHHHhcC
Confidence 45777788887 6677777776666532 44333222 123 45687776653211 1000000 011234556778
Q ss_pred CCcEEEecCceeEEEEcccccccccccccccccccccchhhhhhh-----------ccCCeEEeeCCCcccccceeeeEe
Q 015534 221 DDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQA-----------MMEPLVDTVDQNQIVTNCQLLKTM 289 (405)
Q Consensus 221 pgG~lip~~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~-----------~~~p~~~~~~~~~~ls~p~~~~~~ 289 (405)
|+-.+.|+.+.+.+.+...+.++....+ ..++.|||++.++++. .++|+|+| ++.++++|.+++.|
T Consensus 464 ~~~~V~P~~~~L~Ai~~kF~DL~~I~S~-~G~~~GFDl~~~Dei~~kA~~~~da~~~E~~LWEY--~~~~~~d~~eIL~F 540 (636)
T KOG1501|consen 464 DELRVEPHMGVLKAIPEKFEDLQNIASD-VGTVNGFDLSFFDEISTKARTATDAIVDEQSLWEY--AGIVKGDAVEILRF 540 (636)
T ss_pred CceeeccccchhhhhhHHHHHHHhhccc-ccccccceeeehhHHHHhhchhhhhhhccchhhhc--cCeecCCceeEEEe
Confidence 9999999999999999998888765544 4689999998887664 25789988 88999999999999
Q ss_pred eCCCCCCCCCceeeeEEEEEeecceEeEEEEEEEEEEcCCCceeEEecCCCCC--------CCCeeeEEEecCCceecCC
Q 015534 290 DISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGPKSR--------ATHWKQTVLYLEDVLTICE 361 (405)
Q Consensus 290 d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~lst~p~~~--------~~~W~q~v~~l~~p~~v~~ 361 (405)
+|......+ .-.+.+.+.|.-||+.+|++++|.+ +.|||+...- ..|.+|+||+... .+..
T Consensus 541 ~~~~~V~~Q-----k~~V~i~~~~sS~A~~mWME~~~~~----~nLSTGLL~~~~~G~~~WN~~~KQ~VYF~~t--~L~~ 609 (636)
T KOG1501|consen 541 PIDGRVSSQ-----KCVVNIDNMSSSNAIPMWMEWEFGG----INLSTGLLSISSAGVPEWNKGYKQGVYFPIT--ALRN 609 (636)
T ss_pred ccCCccccc-----eeEEEccCCCccccceeeEEeeeCc----eeecccceeecCCCCcccCccccceeEEEhH--HhCC
Confidence 999765544 3456678999999999999999984 8899876531 2577999998744 3555
Q ss_pred CCEEEEEEEEeeCCCCCceEEEEEEEE
Q 015534 362 GEAISGSLTVAPNKKNPRDVDIMLKYS 388 (405)
Q Consensus 362 g~~i~~~~~~~~~~~~~r~~~~~~~~~ 388 (405)
..++.+++.+.+++ ++|.++|.
T Consensus 610 ~ksl~~~~~F~~~T-----GDI~~qF~ 631 (636)
T KOG1501|consen 610 DKSLCLHALFDKST-----GDINFQFG 631 (636)
T ss_pred CceEEEEEEEcCCC-----CceEEEec
Confidence 66899988876544 67777764
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-09 Score=108.50 Aligned_cols=113 Identities=22% Similarity=0.228 Sum_probs=84.3
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE- 184 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 184 (405)
.+.+.+.+.......++.+|||+|||+|.+++.+++. +.+|+|+|+++ +++.|++++..+++. +++++.+|+.+..
T Consensus 277 ~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~l~ 354 (431)
T TIGR00479 277 NEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETVLP 354 (431)
T ss_pred HHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHHHH
Confidence 3344444544445567789999999999999999987 45999999999 999999999999984 6999999997642
Q ss_pred ---CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 185 ---LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 185 ---~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
....+||+|+.++.-. +....++..+.+ ++|+++++.
T Consensus 355 ~~~~~~~~~D~vi~dPPr~-----G~~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 355 KQPWAGQIPDVLLLDPPRK-----GCAAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred HHHhcCCCCCEEEECcCCC-----CCCHHHHHHHHh-cCCCEEEEE
Confidence 2235799999987422 222445555443 788887664
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-09 Score=106.17 Aligned_cols=99 Identities=11% Similarity=0.125 Sum_probs=77.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC-CCceeEEEEccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWM 198 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~ 198 (405)
.++.+|||+|||+|.+++.++..+ .+|+|+|+++ +++.|+++++.+++. +++++.+|+.++... ..+||+|+.++.
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~vi~DPP 309 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQMSAPELVLVNPP 309 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhcCCCCCEEEECCC
Confidence 456799999999999999999875 5999999999 999999999999985 699999999775421 246999999986
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
-. +....++..+. .++|+++++.
T Consensus 310 r~-----G~~~~~l~~l~-~~~p~~ivyv 332 (374)
T TIGR02085 310 RR-----GIGKELCDYLS-QMAPKFILYS 332 (374)
T ss_pred CC-----CCcHHHHHHHH-hcCCCeEEEE
Confidence 22 22334445553 3688887764
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.04 E-value=3e-09 Score=99.67 Aligned_cols=108 Identities=17% Similarity=0.153 Sum_probs=80.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcC--C-CCcEEEEEccccccc-CCCCceeEEEE
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANG--F-SNVITVLKGKIEEIE-LPVTKVDIIIS 195 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~-~~~~~~D~Iv~ 195 (405)
.+++||+||||+|.++..+++.+ ..+|+++|+++ +++.|++.+...+ + ..+++++.+|..... ...++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 44599999999999998888865 67999999999 9999999875532 1 246888988886642 12378999999
Q ss_pred ccccccccChh-hHHHHHHHHHhcccCCcEEEecC
Q 015534 196 EWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 196 ~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+.......... ....+++.+.+.|+|||+++...
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 75422111111 13577889999999999998754
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.1e-09 Score=91.23 Aligned_cols=106 Identities=24% Similarity=0.313 Sum_probs=85.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CC-CCceeEEEEc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LP-VTKVDIIISE 196 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~-~~~~D~Iv~~ 196 (405)
..|.++||+-+|+|.+++.++.+|+.+|+.||.+. .+.+++++++..++..+++++..|..... .. .+.||+|+.+
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 78999999999999999999999999999999999 99999999999998888999999998542 22 2359999998
Q ss_pred cccccccChhhH--HHHHHH--HHhcccCCcEEEecCc
Q 015534 197 WMGYFLLFENML--NTVLYA--RDKWLVDDGIVLPDKA 230 (405)
Q Consensus 197 ~~~~~l~~~~~~--~~~l~~--~~~~LkpgG~lip~~~ 230 (405)
+... .+.. ...+.. -..+|+|+|.++....
T Consensus 122 PPy~----~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 122 PPYA----KGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CCCc----cchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 7522 1222 222222 4588999999987654
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-09 Score=96.69 Aligned_cols=99 Identities=31% Similarity=0.312 Sum_probs=73.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
..++.+|||+.||.|.+++.+|+ ..++.|+|+|++| .++.++++++.|++.++++++++|..++.. ...+|-|+++.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC
Confidence 57889999999999999999999 4467999999999 999999999999999999999999998865 58999999865
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
+.. ...++..+.+++++||++-
T Consensus 178 p~~-------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 PES-------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp TSS-------GGGGHHHHHHHEEEEEEEE
T ss_pred hHH-------HHHHHHHHHHHhcCCcEEE
Confidence 422 2246666778899998763
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.3e-09 Score=100.94 Aligned_cols=117 Identities=21% Similarity=0.208 Sum_probs=97.7
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEc-ccccccCC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEEIELP 186 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~ 186 (405)
.+.+++.+.....+|..|||--||||.+.+.+.-.|+ +|+|+|++. |++-|+.|+...++.+ ..+... |+..++++
T Consensus 184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lpl~ 261 (347)
T COG1041 184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLPLR 261 (347)
T ss_pred HHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccCCCC
Confidence 5666777777889999999999999999999999988 999999999 9999999999998865 555555 99999998
Q ss_pred CCceeEEEEccccccccC-------hhhHHHHHHHHHhcccCCcEEEec
Q 015534 187 VTKVDIIISEWMGYFLLF-------ENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~-------~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
..++|.|++++. |.-.. +.....+++.+.++|++||++++.
T Consensus 262 ~~~vdaIatDPP-YGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~ 309 (347)
T COG1041 262 DNSVDAIATDPP-YGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA 309 (347)
T ss_pred CCccceEEecCC-CCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence 677999999863 32211 345678889999999999988753
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.8e-10 Score=100.01 Aligned_cols=120 Identities=20% Similarity=0.192 Sum_probs=95.5
Q ss_pred HHHHHHHHHhcc--CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCC-CcEEEEEccccc
Q 015534 107 TKSYQNVIYQNK--FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEE 182 (405)
Q Consensus 107 ~~~~~~~i~~~~--~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~ 182 (405)
+..|.+++.+.. ....|.+|||...|-|..++.++++|+.+|+.+|.++ .++.|.-|.=..++. ..|+++.+|+.+
T Consensus 117 tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e 196 (287)
T COG2521 117 TDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE 196 (287)
T ss_pred cCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH
Confidence 345556655443 3456999999999999999999999999999999999 999887653222221 348999999988
Q ss_pred cc--CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 183 IE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 183 ~~--~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
+. +++++||+|+.++.-+.+-++-.-..+.++++|+|||||.++
T Consensus 197 ~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlF 242 (287)
T COG2521 197 VVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLF 242 (287)
T ss_pred HHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEE
Confidence 74 678899999998866666555566789999999999999987
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-09 Score=98.94 Aligned_cols=104 Identities=14% Similarity=0.159 Sum_probs=85.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--C-C----CCce
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L-P----VTKV 190 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~-~----~~~~ 190 (405)
.+.++|||||+++|..++.+|+. + ..+|+++|.++ .++.|++++...|+.++|+++.+++.+.. + + .++|
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 45679999999999999999984 2 45999999999 99999999999999999999999987752 1 1 2689
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCc
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
|+|+.+. ........+..+.++|+|||.|+....
T Consensus 158 D~iFiDa------dK~~Y~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 158 DFIFVDA------DKDNYINYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred cEEEecC------CHHHhHHHHHHHHHhcCCCeEEEEcCC
Confidence 9999753 134556777888899999999987654
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.8e-09 Score=102.95 Aligned_cols=109 Identities=24% Similarity=0.286 Sum_probs=80.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHH-----HHcCC-CCcEEEEEccccccc-CCCCcee
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIV-----EANGF-SNVITVLKGKIEEIE-LPVTKVD 191 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~-----~~~~~-~~~i~~~~~d~~~~~-~~~~~~D 191 (405)
..+++||+||||+|..+..+++.+ ..+|++||+++ +++.|++.. ....+ .++++++.+|..++. ...++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 445799999999999998888864 57999999999 999999731 11122 368999999998753 2346899
Q ss_pred EEEEccccccc--cChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 192 IIISEWMGYFL--LFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 192 ~Iv~~~~~~~l--~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+|+++...... ...-.-..++..+.+.|+|||+++...
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 99997532211 011122568889999999999987653
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-09 Score=99.74 Aligned_cols=110 Identities=18% Similarity=0.204 Sum_probs=87.2
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCC-----cEEEEEccccccc------C
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSN-----VITVLKGKIEEIE------L 185 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~-----~i~~~~~d~~~~~------~ 185 (405)
....++..+||+|||-|.-.+-.-++|...++|+|+.+ .+..|+++.+...-.. .+.|+.+|..... .
T Consensus 113 ~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~ 192 (389)
T KOG1975|consen 113 LYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF 192 (389)
T ss_pred HHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence 34567889999999999999999899999999999999 9999998876432111 2688898876532 3
Q ss_pred CCCceeEEEEcc-ccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 186 PVTKVDIIISEW-MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 186 ~~~~~D~Iv~~~-~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
++.+||+|-|-. +.|....+.....++..+.+.|+|||++|-
T Consensus 193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG 235 (389)
T ss_pred CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence 445599999864 445556677888999999999999999983
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.98 E-value=2e-09 Score=93.19 Aligned_cols=90 Identities=22% Similarity=0.255 Sum_probs=69.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISE 196 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~ 196 (405)
..+|.+|||+|||.|.+...|.+.-..+++|+|+++ .+..+.+ +| +.++++|+++-. +++++||.||.+
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~----rG----v~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA----RG----VSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH----cC----CCEEECCHHHhHhhCCCCCccEEehH
Confidence 468899999999999999999884455999999999 7766544 34 679999997743 678999999985
Q ss_pred cccccccChhhHHHHHHHHHhccc
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLV 220 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~Lk 220 (405)
.. +.....+..++.++.|+-+
T Consensus 83 qt---LQ~~~~P~~vL~EmlRVgr 103 (193)
T PF07021_consen 83 QT---LQAVRRPDEVLEEMLRVGR 103 (193)
T ss_pred hH---HHhHhHHHHHHHHHHHhcC
Confidence 43 4444567788887766633
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.4e-09 Score=98.30 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=60.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHc-CCCCcEEEEE-ccccccc----CCCCceeEE
Q 015534 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEAN-GFSNVITVLK-GKIEEIE----LPVTKVDII 193 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~-~~~~~i~~~~-~d~~~~~----~~~~~~D~I 193 (405)
++.+|||||||+|.+...++. ....+++|+|+++ +++.|++++..| ++.++|+++. .+..++. .+.++||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457999999999977666655 4445999999999 999999999999 7988899865 3333322 234689999
Q ss_pred EEccc
Q 015534 194 ISEWM 198 (405)
Q Consensus 194 v~~~~ 198 (405)
+|++.
T Consensus 194 vcNPP 198 (321)
T PRK11727 194 LCNPP 198 (321)
T ss_pred EeCCC
Confidence 99985
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.1e-09 Score=96.98 Aligned_cols=107 Identities=24% Similarity=0.161 Sum_probs=81.6
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHH-c------C----CCCcEEEEEcccccccC
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-N------G----FSNVITVLKGKIEEIEL 185 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~-~------~----~~~~i~~~~~d~~~~~~ 185 (405)
....++.+||..|||.|.-...||+.|. +|+|+|+|+ .++.|.+.... . + -.++|+++++|+.++..
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 3456778999999999999999999988 999999999 99887432211 0 0 12468999999999864
Q ss_pred CC-CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 186 PV-TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 186 ~~-~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
.. ++||+|+-..+. +.+++.+-+.....+.++|+|||.++
T Consensus 112 ~~~g~fD~iyDr~~l-~Alpp~~R~~Ya~~l~~ll~p~g~~l 152 (218)
T PF05724_consen 112 EDVGKFDLIYDRTFL-CALPPEMRERYAQQLASLLKPGGRGL 152 (218)
T ss_dssp SCHHSEEEEEECSST-TTS-GGGHHHHHHHHHHCEEEEEEEE
T ss_pred hhcCCceEEEEeccc-ccCCHHHHHHHHHHHHHHhCCCCcEE
Confidence 42 579999976543 34467788899999999999999954
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.2e-09 Score=109.53 Aligned_cols=110 Identities=18% Similarity=0.173 Sum_probs=81.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCC-CeEEEEechH-HHHHHHHH--HHH---cCCC-CcEEEEEccccccc-CCCCcee
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQI--VEA---NGFS-NVITVLKGKIEEIE-LPVTKVD 191 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~-~~V~~vD~s~-~~~~a~~~--~~~---~~~~-~~i~~~~~d~~~~~-~~~~~~D 191 (405)
.++++|||||||+|..+..+++.+. .+|+++|+++ +++.|+++ +.. ..+. ++++++.+|..+.. ...++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4567999999999999999998764 7999999999 99999984 221 1222 57999999998753 2247899
Q ss_pred EEEEccccccccC--hhhHHHHHHHHHhcccCCcEEEecCc
Q 015534 192 IIISEWMGYFLLF--ENMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 192 ~Iv~~~~~~~l~~--~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
+|+++........ .-....+++.+.+.|+|||+++.+..
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 9999754221100 01124578889999999999987653
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-08 Score=89.29 Aligned_cols=117 Identities=20% Similarity=0.213 Sum_probs=84.7
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCe---------EEEEechH-HHHHHHHHHHHcCCCCcEEEEE
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG-AAH---------VYAVECSQ-MANMAKQIVEANGFSNVITVLK 177 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g-~~~---------V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~ 177 (405)
.+..++.......++..|||--||+|.+.+.++..+ ... ++|+|+++ +++.|++++...++.+.+.+.+
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~ 94 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQ 94 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEe
Confidence 455566666677888999999999999999888743 223 88999999 9999999999999998999999
Q ss_pred cccccccCCCCceeEEEEccccccc--cC----hhhHHHHHHHHHhcccCCcEEE
Q 015534 178 GKIEEIELPVTKVDIIISEWMGYFL--LF----ENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 178 ~d~~~~~~~~~~~D~Iv~~~~~~~l--~~----~~~~~~~l~~~~~~LkpgG~li 226 (405)
.|+.++++..+++|+||+++. |.. .. +.....+++.+.++|++...++
T Consensus 95 ~D~~~l~~~~~~~d~IvtnPP-yG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179)
T PF01170_consen 95 WDARELPLPDGSVDAIVTNPP-YGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179)
T ss_dssp --GGGGGGTTSBSCEEEEE---STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred cchhhcccccCCCCEEEECcc-hhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 999999966689999999873 322 11 1233567788889999844443
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.4e-09 Score=98.59 Aligned_cols=88 Identities=20% Similarity=0.311 Sum_probs=72.3
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc
Q 015534 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (405)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (405)
.+.|.......++.+|||||||+|.++..+++.+ .+|+|+|+++ +++.+++++...+..++++++++|+.+..+ ..
T Consensus 25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~ 101 (294)
T PTZ00338 25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PY 101 (294)
T ss_pred HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cc
Confidence 3344444556788999999999999999999974 5899999999 999999999887755679999999988765 47
Q ss_pred eeEEEEccccccc
Q 015534 190 VDIIISEWMGYFL 202 (405)
Q Consensus 190 ~D~Iv~~~~~~~l 202 (405)
||+|++++. |.+
T Consensus 102 ~d~VvaNlP-Y~I 113 (294)
T PTZ00338 102 FDVCVANVP-YQI 113 (294)
T ss_pred cCEEEecCC-ccc
Confidence 899999864 433
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.7e-09 Score=101.09 Aligned_cols=98 Identities=17% Similarity=0.187 Sum_probs=80.0
Q ss_pred CCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccc
Q 015534 123 DKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (405)
Q Consensus 123 ~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (405)
+.+|||++||+|.+++.++. .++.+|+++|+++ +++.++++++.|++. .++++++|+..+....++||+|+.+++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDPF-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECCC--
Confidence 46899999999999999987 5667999999999 999999999999985 478999999775321367999999875
Q ss_pred cccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 201 FLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+....++....+.+++||++..+
T Consensus 135 -----Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -----GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -----CCcHHHHHHHHHHhcCCCEEEEE
Confidence 22345666655678999999876
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.8e-09 Score=95.56 Aligned_cols=82 Identities=23% Similarity=0.343 Sum_probs=67.7
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc
Q 015534 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (405)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (405)
.+.+.......++.+|||||||+|.++..+++.+ .+|+|+|+++ +++.+++++.. . ++++++++|+.+++++ .
T Consensus 18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~--~-~~v~ii~~D~~~~~~~--~ 91 (258)
T PRK14896 18 VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA--A-GNVEIIEGDALKVDLP--E 91 (258)
T ss_pred HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc--C-CCEEEEEeccccCCch--h
Confidence 3344444556678999999999999999999984 5999999999 99999988754 2 4699999999987764 5
Q ss_pred eeEEEEccc
Q 015534 190 VDIIISEWM 198 (405)
Q Consensus 190 ~D~Iv~~~~ 198 (405)
+|.|++++.
T Consensus 92 ~d~Vv~NlP 100 (258)
T PRK14896 92 FNKVVSNLP 100 (258)
T ss_pred ceEEEEcCC
Confidence 899999875
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-08 Score=90.46 Aligned_cols=103 Identities=19% Similarity=0.247 Sum_probs=77.6
Q ss_pred CEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCceeEEEEccc
Q 015534 124 KVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISEWM 198 (405)
Q Consensus 124 ~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~Iv~~~~ 198 (405)
..+||||||.|.+.+.+|+ .+...++|+|+.. .+..|.+.+...+++ ++.++++|+..+. ++++++|-|.....
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 3899999999999999988 6678999999999 999999999988985 5999999998742 45589999998543
Q ss_pred cccccChh-----hHHHHHHHHHhcccCCcEEEe
Q 015534 199 GYFLLFEN-----MLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 199 ~~~l~~~~-----~~~~~l~~~~~~LkpgG~lip 227 (405)
+-..-... .-+.++..+.++|+|||.+..
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~ 131 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYF 131 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEE
Confidence 32221100 126788999999999998864
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.87 E-value=1e-08 Score=92.87 Aligned_cols=99 Identities=21% Similarity=0.249 Sum_probs=64.3
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHH-HHHHHHHcCCCCcE-EEEEcccc----
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANM-AKQIVEANGFSNVI-TVLKGKIE---- 181 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~-a~~~~~~~~~~~~i-~~~~~d~~---- 181 (405)
.+..++.......++.+|||+|||+|.++..+++.|+++|+|+|+++ |+.. .++. .++ .+...++.
T Consensus 62 kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~-------~~v~~~~~~ni~~~~~ 134 (228)
T TIGR00478 62 KLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD-------ERVKVLERTNIRYVTP 134 (228)
T ss_pred HHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC-------CCeeEeecCCcccCCH
Confidence 34444554334468889999999999999999999999999999999 7765 2222 112 22233333
Q ss_pred -cccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 182 -EIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 182 -~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
++...-..+|++++.. ..++..+.++|+| |.++
T Consensus 135 ~~~~~d~~~~DvsfiS~-----------~~~l~~i~~~l~~-~~~~ 168 (228)
T TIGR00478 135 ADIFPDFATFDVSFISL-----------ISILPELDLLLNP-NDLT 168 (228)
T ss_pred hHcCCCceeeeEEEeeh-----------HhHHHHHHHHhCc-CeEE
Confidence 2221223567666532 2246677788899 7665
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.8e-09 Score=96.96 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=65.3
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (405)
+.+.....++.+|||||||+|.++..+++.+. +|+|+|+++ |++.+++++.. ++++++++|+.+++++...+|.
T Consensus 34 i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~~~~~~ 108 (272)
T PRK00274 34 IVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSELQPLK 108 (272)
T ss_pred HHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHHcCcce
Confidence 33334567788999999999999999999865 999999999 99999887642 4699999999988765222599
Q ss_pred EEEccc
Q 015534 193 IISEWM 198 (405)
Q Consensus 193 Iv~~~~ 198 (405)
||+++.
T Consensus 109 vv~NlP 114 (272)
T PRK00274 109 VVANLP 114 (272)
T ss_pred EEEeCC
Confidence 999864
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.3e-08 Score=96.74 Aligned_cols=101 Identities=25% Similarity=0.291 Sum_probs=87.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
..+|.+|||.-||.|.+++.+|+.|...|+|+|++| .++.+++++..|++.++++.+++|..++....+.+|-|++..+
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 456999999999999999999999887799999999 9999999999999998899999999998755588999997543
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.....++....+++++||++..
T Consensus 266 -------~~a~~fl~~A~~~~k~~g~iHy 287 (341)
T COG2520 266 -------KSAHEFLPLALELLKDGGIIHY 287 (341)
T ss_pred -------CcchhhHHHHHHHhhcCcEEEE
Confidence 2334566667788899998763
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.7e-08 Score=85.65 Aligned_cols=111 Identities=24% Similarity=0.273 Sum_probs=85.2
Q ss_pred HHHHHHhccCCCCCC-EEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015534 110 YQNVIYQNKFLFKDK-VVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~-~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (405)
+.+.+.-........ +++|||+|.|.-++.+|- .+..+|+.+|.+. -+...+......+++ +++++++++++ ...
T Consensus 35 i~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~-~~~ 112 (184)
T PF02527_consen 35 ILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE-PEY 112 (184)
T ss_dssp HHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH-TTT
T ss_pred HHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc-ccc
Confidence 334443333333333 899999999999998888 5667999999999 999999999999996 59999999999 333
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
..+||+|++..+ ..+..++.-+..+|++||.++...
T Consensus 113 ~~~fd~v~aRAv-------~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 113 RESFDVVTARAV-------APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp TT-EEEEEEESS-------SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCCccEEEeehh-------cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 489999999876 456788888899999999988543
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.5e-08 Score=95.90 Aligned_cols=94 Identities=18% Similarity=0.156 Sum_probs=71.6
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC----------------
Q 015534 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP---------------- 186 (405)
Q Consensus 124 ~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---------------- 186 (405)
.+|||+|||+|.+++.+++. +++|+|+|+++ +++.|++++..+++. +++++.+|+.++...
T Consensus 199 ~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 46999999999999988886 46999999999 999999999999985 599999999774311
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
...||+|+.++.-. +..+.++..+. +|+++++.
T Consensus 277 ~~~~d~v~lDPPR~-----G~~~~~l~~l~---~~~~ivYv 309 (353)
T TIGR02143 277 SYNCSTIFVDPPRA-----GLDPDTCKLVQ---AYERILYI 309 (353)
T ss_pred cCCCCEEEECCCCC-----CCcHHHHHHHH---cCCcEEEE
Confidence 02389999987522 23344555443 36666553
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.2e-08 Score=90.18 Aligned_cols=86 Identities=31% Similarity=0.380 Sum_probs=76.5
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (405)
...+.|.......++..|||||.|||.++..+.+.|. +|+|+|+++ |+....++++....+.+.+++++|....++|
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P- 122 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP- 122 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc-
Confidence 4566677778889999999999999999999999955 999999999 9999999998877778999999999888764
Q ss_pred CceeEEEEcc
Q 015534 188 TKVDIIISEW 197 (405)
Q Consensus 188 ~~~D~Iv~~~ 197 (405)
.||++|++.
T Consensus 123 -~fd~cVsNl 131 (315)
T KOG0820|consen 123 -RFDGCVSNL 131 (315)
T ss_pred -ccceeeccC
Confidence 899999975
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.6e-08 Score=96.14 Aligned_cols=109 Identities=17% Similarity=0.161 Sum_probs=77.1
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE- 184 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 184 (405)
.+.+.+.+...... .+.+|||++||+|.+++.+++. +++|+|+|.++ +++.|++++..+++. +++++.+|+.++.
T Consensus 192 ~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~ 268 (362)
T PRK05031 192 NEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQ 268 (362)
T ss_pred HHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHH
Confidence 33444444433222 2357999999999999988886 56999999999 999999999999985 6999999997742
Q ss_pred -CC--------------CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 185 -LP--------------VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 185 -~~--------------~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
+. ..+||+|+.++.- . +..+.++..+.+ |+++++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR-~----G~~~~~l~~l~~---~~~ivy 317 (362)
T PRK05031 269 AMNGVREFNRLKGIDLKSYNFSTIFVDPPR-A----GLDDETLKLVQA---YERILY 317 (362)
T ss_pred HHhhcccccccccccccCCCCCEEEECCCC-C----CCcHHHHHHHHc---cCCEEE
Confidence 10 1258999998852 2 233444444433 566555
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=5e-08 Score=80.16 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=61.0
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcH-HHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC-
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGI-LSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP- 186 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~-l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~- 186 (405)
+.+.|..+....++.+|||||||+|. ++..|++.|. .|+|+|+++ .++.|+++ .+.++.+|+.+-.+.
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~ 74 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEI 74 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHH
Confidence 34445554555567899999999996 8999999876 999999999 98888764 268899999876543
Q ss_pred CCceeEEEE
Q 015534 187 VTKVDIIIS 195 (405)
Q Consensus 187 ~~~~D~Iv~ 195 (405)
-+.+|+|.+
T Consensus 75 y~~a~liys 83 (134)
T PRK04148 75 YKNAKLIYS 83 (134)
T ss_pred HhcCCEEEE
Confidence 478999998
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-08 Score=88.02 Aligned_cols=77 Identities=10% Similarity=-0.018 Sum_probs=62.7
Q ss_pred EEEechH-HHHHHHHHHHHcC--CCCcEEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEE
Q 015534 149 YAVECSQ-MANMAKQIVEANG--FSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIV 225 (405)
Q Consensus 149 ~~vD~s~-~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 225 (405)
+|+|+|+ |++.|+++....+ ..++++++++|+.++++++++||+|++.. .+.+..+...++++++++|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~---~l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGY---GLRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecc---hhhcCCCHHHHHHHHHHHcCcCeEE
Confidence 4899999 9999987765322 22469999999999998878999999854 3444467889999999999999998
Q ss_pred Eec
Q 015534 226 LPD 228 (405)
Q Consensus 226 ip~ 228 (405)
+..
T Consensus 78 ~i~ 80 (160)
T PLN02232 78 SIL 80 (160)
T ss_pred EEE
Confidence 754
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.8e-08 Score=88.97 Aligned_cols=104 Identities=21% Similarity=0.172 Sum_probs=75.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (405)
...++||+|||-|..+..+.-.-+.+|-.||+.+ +++.|++.+... .....++.+..++++..+..+||+|.+.|+..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 3469999999999999876553378999999999 999999876552 12447889999998876667999999999866
Q ss_pred cccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 201 FLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|. ..++-.++..+...|+|+|.|+.
T Consensus 134 hLT-D~dlv~fL~RCk~~L~~~G~Ivv 159 (218)
T PF05891_consen 134 HLT-DEDLVAFLKRCKQALKPNGVIVV 159 (218)
T ss_dssp GS--HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCC-HHHHHHHHHHHHHhCcCCcEEEE
Confidence 664 45677999999999999999885
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3e-08 Score=85.27 Aligned_cols=109 Identities=24% Similarity=0.352 Sum_probs=85.1
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (405)
...+.|..+.....|++|||+|+|+|..++.+++.|++.|++.|+.+ .....+-+.+.|+.. |.++..|... .+
T Consensus 66 ~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g---~~ 140 (218)
T COG3897 66 VLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG---SP 140 (218)
T ss_pred HHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC---CC
Confidence 45566777788889999999999999999999999999999999999 999999999999974 8899888866 34
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhcccCCc-EEE
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDG-IVL 226 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG-~li 226 (405)
..||+|+..-+ ..+...-..++. +.+.|+..| .++
T Consensus 141 ~~~Dl~LagDl---fy~~~~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 141 PAFDLLLAGDL---FYNHTEADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred cceeEEEeece---ecCchHHHHHHH-HHHHHHhCCCEEE
Confidence 78999998433 333344456666 444444444 444
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.76 E-value=5e-08 Score=93.51 Aligned_cols=107 Identities=15% Similarity=0.148 Sum_probs=80.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcC--C-CCcEEEEEccccccc-CCCCceeEEEE
Q 015534 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANG--F-SNVITVLKGKIEEIE-LPVTKVDIIIS 195 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~-~~~~~~D~Iv~ 195 (405)
..++||.||+|.|.++..+++. +..+|+.||+++ +++.|++.+..++ + .++++++.+|...+. ...++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4579999999999999988884 577999999999 9999999886432 2 368999999998764 23478999999
Q ss_pred ccccccccCh---hhHHHHHH-HHHhcccCCcEEEec
Q 015534 196 EWMGYFLLFE---NMLNTVLY-ARDKWLVDDGIVLPD 228 (405)
Q Consensus 196 ~~~~~~l~~~---~~~~~~l~-~~~~~LkpgG~lip~ 228 (405)
+.....-... -.-..++. .+.+.|+|||+++.+
T Consensus 183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 7432110000 01235666 788999999998754
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.6e-08 Score=82.48 Aligned_cols=85 Identities=19% Similarity=0.183 Sum_probs=73.2
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015534 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (405)
Q Consensus 112 ~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (405)
..|........|++++|+|||+|.++...+-.+...|+|+|+.| .++++.+++....+. +.++++|+.++.+..+.|
T Consensus 38 ~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~~g~f 115 (185)
T KOG3420|consen 38 YTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELKGGIF 115 (185)
T ss_pred HHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhccCCeE
Confidence 34444455678999999999999999777777888999999999 999999999988875 799999999998877899
Q ss_pred eEEEEccc
Q 015534 191 DIIISEWM 198 (405)
Q Consensus 191 D~Iv~~~~ 198 (405)
|.++.++.
T Consensus 116 DtaviNpp 123 (185)
T KOG3420|consen 116 DTAVINPP 123 (185)
T ss_pred eeEEecCC
Confidence 99999863
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.3e-07 Score=87.27 Aligned_cols=107 Identities=17% Similarity=0.185 Sum_probs=81.5
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015534 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (405)
Q Consensus 112 ~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (405)
..+.......+..+|+|||+|+|.++..+++ .+..+++.+|.-.+++.+++ .++|+++.+|+. -++| . +
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-------~~rv~~~~gd~f-~~~P-~-~ 159 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-------ADRVEFVPGDFF-DPLP-V-A 159 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-------TTTEEEEES-TT-TCCS-S-E
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-------ccccccccccHH-hhhc-c-c
Confidence 3444445566678999999999999999998 66779999999558888887 378999999998 5566 4 9
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCC--cEEEecC
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDD--GIVLPDK 229 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkpg--G~lip~~ 229 (405)
|+++...+.+.. .......+++.+++.|+|| |+|+...
T Consensus 160 D~~~l~~vLh~~-~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 160 DVYLLRHVLHDW-SDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp SEEEEESSGGGS--HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred cceeeehhhhhc-chHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 999986554433 3456678999999999999 9988543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.1e-08 Score=88.20 Aligned_cols=94 Identities=32% Similarity=0.319 Sum_probs=71.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (405)
...++||||+|.|..+..++.. .++|++.|.|+ |....++ .|+ +++. ..++.-.+.+||+|.| .+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~----kg~----~vl~--~~~w~~~~~~fDvIsc---LN 159 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSK----KGF----TVLD--IDDWQQTDFKFDVISC---LN 159 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHh----CCC----eEEe--hhhhhccCCceEEEee---hh
Confidence 4568999999999999999887 67999999999 9665544 443 3332 2223323468999999 34
Q ss_pred cccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 201 FLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
.|..-..+..+++.+++.|+|+|++|.+-
T Consensus 160 vLDRc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 160 VLDRCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred hhhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 45555678899999999999999988654
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.2e-07 Score=82.30 Aligned_cols=107 Identities=14% Similarity=0.238 Sum_probs=68.0
Q ss_pred CCCEEEEEcCCCc----HHHHHHHHc---CC---CeEEEEechH-HHHHHHHHH--------------HH-----cC---
Q 015534 122 KDKVVLDVGAGTG----ILSLFCAKA---GA---AHVYAVECSQ-MANMAKQIV--------------EA-----NG--- 168 (405)
Q Consensus 122 ~~~~VLDiGcG~G----~l~~~la~~---g~---~~V~~vD~s~-~~~~a~~~~--------------~~-----~~--- 168 (405)
+..+|+..||++| .+++.+.+. .. -+|+|+|+|+ +++.|++-. .+ .+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 5579999999999 456666661 12 3899999999 999998721 00 00
Q ss_pred -----CCCcEEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 169 -----FSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 169 -----~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+..+|+|...|+.+...+.+.||+|+|.-+.-++ .+.....+++.+++.|+|||.++...
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF-~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYF-DPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS--HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEe-CHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 1246899999998833345899999995443333 45667899999999999999998644
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.3e-07 Score=85.51 Aligned_cols=104 Identities=18% Similarity=0.214 Sum_probs=82.9
Q ss_pred CEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCceeEEEEccc
Q 015534 124 KVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISEWM 198 (405)
Q Consensus 124 ~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~Iv~~~~ 198 (405)
..+||||||.|.+...+|+ .+...++|||+.. .+..|.+.+.+.++. ++.+++.|+..+. .++++.|-|+.+..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 5899999999999888888 6778999999999 999999999999985 6999999998764 34459999997543
Q ss_pred ccccc--C-hh--hHHHHHHHHHhcccCCcEEEec
Q 015534 199 GYFLL--F-EN--MLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 199 ~~~l~--~-~~--~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+-..- | .. .-+.++..+.+.|+|||.+.+.
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 32221 1 00 1257889999999999998753
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-07 Score=80.22 Aligned_cols=101 Identities=18% Similarity=0.256 Sum_probs=79.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
....+||||||+|..+.++++. +...+.++|+|| +++..++.+..|+. ++..+..|+..-..+ +++|+++.++
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~~-~~VDvLvfNP- 118 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLRN-ESVDVLVFNP- 118 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhcc-CCccEEEECC-
Confidence 3678999999999999999983 456889999999 99999999998885 388999998776555 9999999876
Q ss_pred cccccC-------------------hhhHHHHHHHHHhcccCCcEEE
Q 015534 199 GYFLLF-------------------ENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 199 ~~~l~~-------------------~~~~~~~l~~~~~~LkpgG~li 226 (405)
.|.... ....+.++..+..+|.|.|+++
T Consensus 119 PYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Y 165 (209)
T KOG3191|consen 119 PYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFY 165 (209)
T ss_pred CcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEE
Confidence 233211 1124677777888889999876
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-07 Score=92.93 Aligned_cols=115 Identities=25% Similarity=0.211 Sum_probs=89.2
Q ss_pred HhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc
Q 015534 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (405)
Q Consensus 105 ~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (405)
..++.+...........++.+|||+=||.|.+++.+|+. .++|+|+|+++ +++.|+++++.|++.+ ++|+.++++++
T Consensus 276 ~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~ 353 (432)
T COG2265 276 AVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEF 353 (432)
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHH
Confidence 345555555555566678889999999999999999976 66999999999 9999999999999976 99999999998
Q ss_pred cCCC---CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 184 ELPV---TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 184 ~~~~---~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.... ..+|+|+.++.-..+ -+.+++.+.+ ++|..+++.
T Consensus 354 ~~~~~~~~~~d~VvvDPPR~G~-----~~~~lk~l~~-~~p~~IvYV 394 (432)
T COG2265 354 TPAWWEGYKPDVVVVDPPRAGA-----DREVLKQLAK-LKPKRIVYV 394 (432)
T ss_pred hhhccccCCCCEEEECCCCCCC-----CHHHHHHHHh-cCCCcEEEE
Confidence 6442 488999998764332 2355555543 466666553
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.8e-08 Score=82.79 Aligned_cols=73 Identities=23% Similarity=0.247 Sum_probs=56.3
Q ss_pred EEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC--CCCc-eeEEEEccc
Q 015534 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL--PVTK-VDIIISEWM 198 (405)
Q Consensus 125 ~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~-~D~Iv~~~~ 198 (405)
+|+|+.||.|..++.+|+. ..+|+|||+++ .++.|+.+++-.|+.++|+++++|+.++.. .... +|+|++++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCC
Confidence 7999999999999999998 55999999999 999999999999999999999999988742 2122 899998763
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.4e-07 Score=92.68 Aligned_cols=112 Identities=14% Similarity=0.037 Sum_probs=86.3
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEE
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIII 194 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Iv 194 (405)
...+|.+|||++||.|.-+..++.. +...|+|+|+++ -++.+++++.+.|+. ++.+.+.|...+. ...+.||.|+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhhhchhhcCeEE
Confidence 4578899999999999999998884 245899999999 999999999999995 4889999987653 1136899999
Q ss_pred Eccc----cccccChhh---------------HHHHHHHHHhcccCCcEEEecCce
Q 015534 195 SEWM----GYFLLFENM---------------LNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 195 ~~~~----~~~l~~~~~---------------~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
.+.. +.+-.++.. ...++..+.++|||||+++-++++
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 6532 211111111 146788888999999999987765
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.5e-07 Score=83.15 Aligned_cols=117 Identities=13% Similarity=0.139 Sum_probs=90.5
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHH-cC--CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-C--
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-L-- 185 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~-- 185 (405)
+|..........+||||.||.|...+-+.. .+ ...|...|.|+ .++..++.++..|+.+.++|.++|+.+.. +
T Consensus 126 ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~ 205 (311)
T PF12147_consen 126 AIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAA 205 (311)
T ss_pred HHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhc
Confidence 333333334667999999999988777776 43 36899999999 99999999999999987899999997753 1
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
-....++++...+...+.....+...+..+.+.+.|||.+|...
T Consensus 206 l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 206 LDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred cCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 13567998887654444444567778999999999999998543
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.3e-07 Score=87.93 Aligned_cols=81 Identities=22% Similarity=0.403 Sum_probs=65.2
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015534 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (405)
Q Consensus 112 ~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (405)
+.+.......++.+|||||||+|.++..+++.+. +|+++|+++ +++.+++++.. ..+++++++|+..++++ .+
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~--~~ 92 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP--DF 92 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh--Hc
Confidence 3344444566788999999999999999999864 799999999 99999987643 25699999999888764 56
Q ss_pred e---EEEEccc
Q 015534 191 D---IIISEWM 198 (405)
Q Consensus 191 D---~Iv~~~~ 198 (405)
| +|++++.
T Consensus 93 d~~~~vvsNlP 103 (253)
T TIGR00755 93 PKQLKVVSNLP 103 (253)
T ss_pred CCcceEEEcCC
Confidence 6 8888764
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.65 E-value=2e-07 Score=82.07 Aligned_cols=102 Identities=15% Similarity=0.159 Sum_probs=78.5
Q ss_pred EEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC--------CCCceeEEE
Q 015534 125 VVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL--------PVTKVDIII 194 (405)
Q Consensus 125 ~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~~~D~Iv 194 (405)
+|||||||||..+..+|+ .+.....-.|.++ .....+..+...++++...-+..|+..-.- ..++||.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 699999999999999998 5666788899999 777777777777776544555666655421 236899999
Q ss_pred EccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|.-|.+.. .......++....++|++||.++.
T Consensus 108 ~~N~lHI~-p~~~~~~lf~~a~~~L~~gG~L~~ 139 (204)
T PF06080_consen 108 CINMLHIS-PWSAVEGLFAGAARLLKPGGLLFL 139 (204)
T ss_pred ehhHHHhc-CHHHHHHHHHHHHHhCCCCCEEEE
Confidence 96554543 345678899999999999999885
|
The function of this family is unknown. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.9e-07 Score=90.81 Aligned_cols=98 Identities=18% Similarity=0.163 Sum_probs=81.8
Q ss_pred CCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC-CCceeEEEEccc
Q 015534 123 DKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWM 198 (405)
Q Consensus 123 ~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~ 198 (405)
+.+|||+.||+|..++.++.. |+.+|+++|+++ .++.++++++.|++. +++++++|+..+... ..+||+|..+++
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDPf 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDPF 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCCC
Confidence 468999999999999999986 788999999999 999999999999885 589999999876421 257999999874
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+ ....+++.+.+.+++||.+...
T Consensus 124 G-------s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 G-------TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred C-------CcHHHHHHHHHhcccCCEEEEE
Confidence 2 3335777777889999998865
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.6e-07 Score=86.22 Aligned_cols=113 Identities=19% Similarity=0.169 Sum_probs=87.2
Q ss_pred CEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcC--C-CCcEEEEEcccccccC-CCCceeEEEEcc
Q 015534 124 KVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANG--F-SNVITVLKGKIEEIEL-PVTKVDIIISEW 197 (405)
Q Consensus 124 ~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~~-~~~~~D~Iv~~~ 197 (405)
++||-||-|.|..+..+.+.. ..+++.||+++ +++.|++.+.... . ..|++++..|..++.- ..++||+|+++.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 699999999999999999964 68999999999 9999999886543 2 3789999999988753 225899999975
Q ss_pred ccccccChh-hHHHHHHHHHhcccCCcEEEecCceeEEEE
Q 015534 198 MGYFLLFEN-MLNTVLYARDKWLVDDGIVLPDKASLYLTA 236 (405)
Q Consensus 198 ~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~~~~~~~~~ 236 (405)
.......+. .-..+++.+++.|+++|+++.+....+...
T Consensus 158 tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~ 197 (282)
T COG0421 158 TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQD 197 (282)
T ss_pred CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccch
Confidence 433111111 125789999999999999997765544443
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.4e-07 Score=84.80 Aligned_cols=87 Identities=21% Similarity=0.320 Sum_probs=71.9
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC-
Q 015534 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT- 188 (405)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~- 188 (405)
.+.|.......++..|||||+|.|.++..+++.+. +|+|+|+++ ++...++.+.. .++++++++|+....++.-
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~---~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAP---YDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhccc---ccceEEEeCchhcCcchhhc
Confidence 44555556677789999999999999999999955 899999999 99999988762 2679999999999988722
Q ss_pred ceeEEEEccccccc
Q 015534 189 KVDIIISEWMGYFL 202 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l 202 (405)
.++.||+|.. |.+
T Consensus 95 ~~~~vVaNlP-Y~I 107 (259)
T COG0030 95 QPYKVVANLP-YNI 107 (259)
T ss_pred CCCEEEEcCC-Ccc
Confidence 7899999863 544
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.6e-07 Score=85.31 Aligned_cols=122 Identities=17% Similarity=0.160 Sum_probs=94.1
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCC----------------------------------------
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAA---------------------------------------- 146 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~---------------------------------------- 146 (405)
.+.+..+|.......++..++|-=||+|.+.+.+|..+..
T Consensus 176 ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 176 KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence 4567777877788888889999999999999999886421
Q ss_pred eEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccccc--ccChhhHH----HHHHHHHhcc
Q 015534 147 HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF--LLFENMLN----TVLYARDKWL 219 (405)
Q Consensus 147 ~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~--l~~~~~~~----~~l~~~~~~L 219 (405)
.++|+|+++ +++.|+.|+...|+.+.|+|.++|+..+..+.+.+|+||||+. |. +..+..+. .+...+++.+
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPP-YGeRlg~~~~v~~LY~~fg~~lk~~~ 334 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPP-YGERLGSEALVAKLYREFGRTLKRLL 334 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCC-cchhcCChhhHHHHHHHHHHHHHHHh
Confidence 378999999 9999999999999999999999999999755579999999973 33 23333343 3444555666
Q ss_pred cCCcEEEecC
Q 015534 220 VDDGIVLPDK 229 (405)
Q Consensus 220 kpgG~lip~~ 229 (405)
+--+..|+..
T Consensus 335 ~~ws~~v~tt 344 (381)
T COG0116 335 AGWSRYVFTT 344 (381)
T ss_pred cCCceEEEEc
Confidence 6656666543
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.8e-07 Score=74.98 Aligned_cols=112 Identities=16% Similarity=0.100 Sum_probs=84.3
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCC--CeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-- 184 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~--~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-- 184 (405)
..+.+........|..|||+|.|||.++..+.++|. ..++++|.|+ .+....+... .+.++.+|+.++.
T Consensus 36 lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------~~~ii~gda~~l~~~ 109 (194)
T COG3963 36 LARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------GVNIINGDAFDLRTT 109 (194)
T ss_pred HHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------CccccccchhhHHHH
Confidence 444555556677888999999999999999999874 5899999999 8888877653 2678999998876
Q ss_pred ---CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 185 ---LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 185 ---~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.....||.|+|....- ......--++++.+...|.+||.++--
T Consensus 110 l~e~~gq~~D~viS~lPll-~~P~~~~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 110 LGEHKGQFFDSVISGLPLL-NFPMHRRIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred HhhcCCCeeeeEEeccccc-cCcHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 3357899999954211 112233347788888889999998743
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.5e-07 Score=84.34 Aligned_cols=107 Identities=18% Similarity=0.160 Sum_probs=79.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCC---CCcEEEEEcccccccC-CCC-ceeEEE
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGF---SNVITVLKGKIEEIEL-PVT-KVDIII 194 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~---~~~i~~~~~d~~~~~~-~~~-~~D~Iv 194 (405)
++++||-||-|.|..+..+.+.. ..+|++||+++ +++.|++.+..... .++++++.+|...+.- ..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 67899999999999999999865 67999999999 99999998875432 2689999999987642 224 899999
Q ss_pred EccccccccChh-hHHHHHHHHHhcccCCcEEEec
Q 015534 195 SEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 195 ~~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.+.......... ....+++.+.+.|+|||+++..
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~ 190 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQ 190 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEE
Confidence 975432111111 2357889999999999998843
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.8e-07 Score=86.34 Aligned_cols=106 Identities=15% Similarity=0.180 Sum_probs=77.1
Q ss_pred CCEEEEEcCCCc----HHHHHHHHcC-----CCeEEEEechH-HHHHHHHHH------------------HH-----cC-
Q 015534 123 DKVVLDVGAGTG----ILSLFCAKAG-----AAHVYAVECSQ-MANMAKQIV------------------EA-----NG- 168 (405)
Q Consensus 123 ~~~VLDiGcG~G----~l~~~la~~g-----~~~V~~vD~s~-~~~~a~~~~------------------~~-----~~- 168 (405)
..+|+..||+|| .+++.+.+.+ ..+|+|+|+|+ +++.|++-. .. .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 479999999999 5566666632 24799999999 999998742 10 01
Q ss_pred ------CCCcEEEEEcccccccCC-CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 169 ------FSNVITVLKGKIEEIELP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 169 ------~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+...|+|...|+.+.+.+ .+.||+|+|.-+..++ .......++..+.+.|+|||+++...
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF-~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF-DKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC-CHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 225678888888775432 4789999995443323 44567899999999999999987543
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.3e-07 Score=79.95 Aligned_cols=95 Identities=24% Similarity=0.291 Sum_probs=81.1
Q ss_pred CCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc-eeEEEEcccc
Q 015534 123 DKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK-VDIIISEWMG 199 (405)
Q Consensus 123 ~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~D~Iv~~~~~ 199 (405)
+.+++|||+|.|.-++.+|- .+..+|+-+|... -+...++.....+++ +++++++.++++... .. ||+|+|..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~-~~~~D~vtsRAv- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQE-KKQYDVVTSRAV- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccc-cccCcEEEeehc-
Confidence 68999999999999999884 5556799999999 999999999999995 599999999998743 23 999999765
Q ss_pred ccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
..+..+..-+..++|+||.++
T Consensus 145 ------a~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 145 ------ASLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred ------cchHHHHHHHHHhcccCCcch
Confidence 456677888889999999875
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.9e-08 Score=83.57 Aligned_cols=97 Identities=18% Similarity=0.140 Sum_probs=59.0
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015534 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (405)
Q Consensus 108 ~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (405)
+.+.+.|. ...++..|.|+|||.+.++..+. . ..+|+..|+-. .+ + .++.+|+..+|+++
T Consensus 61 d~iI~~l~---~~~~~~viaD~GCGdA~la~~~~-~-~~~V~SfDLva----------~n---~--~Vtacdia~vPL~~ 120 (219)
T PF05148_consen 61 DVIIEWLK---KRPKSLVIADFGCGDAKLAKAVP-N-KHKVHSFDLVA----------PN---P--RVTACDIANVPLED 120 (219)
T ss_dssp HHHHHHHC---TS-TTS-EEEES-TT-HHHHH---S----EEEEESS-----------SS---T--TEEES-TTS-S--T
T ss_pred HHHHHHHH---hcCCCEEEEECCCchHHHHHhcc-c-CceEEEeeccC----------CC---C--CEEEecCccCcCCC
Confidence 34444444 23445799999999999985543 2 23799999854 12 2 46789999999999
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+++|++|+.+. |.+ .++..++.+..|+|||||.+.+.
T Consensus 121 ~svDv~VfcLS---LMG-Tn~~~fi~EA~RvLK~~G~L~IA 157 (219)
T PF05148_consen 121 ESVDVAVFCLS---LMG-TNWPDFIREANRVLKPGGILKIA 157 (219)
T ss_dssp T-EEEEEEES------S-S-HHHHHHHHHHHEEEEEEEEEE
T ss_pred CceeEEEEEhh---hhC-CCcHHHHHHHHheeccCcEEEEE
Confidence 99999997432 222 46789999999999999998743
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=9.2e-07 Score=93.59 Aligned_cols=118 Identities=17% Similarity=0.163 Sum_probs=86.2
Q ss_pred HHHHHHHHhccCC-CCCCEEEEEcCCCcHHHHHHHHcC------------------------------------------
Q 015534 108 KSYQNVIYQNKFL-FKDKVVLDVGAGTGILSLFCAKAG------------------------------------------ 144 (405)
Q Consensus 108 ~~~~~~i~~~~~~-~~~~~VLDiGcG~G~l~~~la~~g------------------------------------------ 144 (405)
+.+..+|...... .++..++|.+||+|.+.+.+|..+
T Consensus 175 etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~ 254 (702)
T PRK11783 175 ENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAE 254 (702)
T ss_pred HHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence 4566666665555 567899999999999988887520
Q ss_pred -CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC--CCceeEEEEcccccc--ccChhhHHHHHHHHHhc
Q 015534 145 -AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--VTKVDIIISEWMGYF--LLFENMLNTVLYARDKW 218 (405)
Q Consensus 145 -~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~D~Iv~~~~~~~--l~~~~~~~~~l~~~~~~ 218 (405)
..+++|+|+++ +++.|++++..+|+.+.+++.++|+.++..+ .+++|+|++|+. |. +.....+..+...+.+.
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPP-Yg~r~~~~~~l~~lY~~lg~~ 333 (702)
T PRK11783 255 LPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPP-YGERLGEEPALIALYSQLGRR 333 (702)
T ss_pred cCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCC-CcCccCchHHHHHHHHHHHHH
Confidence 12699999999 9999999999999988899999999988654 247999999974 32 22223444554444444
Q ss_pred cc---CCcEEE
Q 015534 219 LV---DDGIVL 226 (405)
Q Consensus 219 Lk---pgG~li 226 (405)
|+ +|+.+.
T Consensus 334 lk~~~~g~~~~ 344 (702)
T PRK11783 334 LKQQFGGWNAA 344 (702)
T ss_pred HHHhCCCCeEE
Confidence 43 776543
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.5e-08 Score=84.59 Aligned_cols=99 Identities=19% Similarity=0.275 Sum_probs=83.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccccc
Q 015534 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (405)
Q Consensus 123 ~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~ 201 (405)
...++|||||.|.+...+...|..+++-+|.|. |++.++.. +.+++ .+....+|-+.+++.+.++|+|++.+-
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i--~~~~~v~DEE~Ldf~ens~DLiisSls--- 146 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI--ETSYFVGDEEFLDFKENSVDLIISSLS--- 146 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce--EEEEEecchhcccccccchhhhhhhhh---
Confidence 357999999999999999998899999999999 99988763 33443 367788999999998899999999754
Q ss_pred ccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 202 LLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+++..+++..+..++..|||+|.+|-
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFIA 172 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccchh
Confidence 44557788888999999999999883
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.8e-07 Score=83.71 Aligned_cols=95 Identities=16% Similarity=0.174 Sum_probs=69.9
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (405)
.+.+.|.. ......|.|+|||-+.++. .. ...|+..|+-+ -+-.++.+|+.+++++++
T Consensus 170 ~ii~~ik~---r~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d~ 227 (325)
T KOG3045|consen 170 VIIRKIKR---RPKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA---------------VNERVIACDMRNVPLEDE 227 (325)
T ss_pred HHHHHHHh---CcCceEEEecccchhhhhh---cc-ccceeeeeeec---------------CCCceeeccccCCcCccC
Confidence 44444443 2445689999999988765 22 34899999854 224678999999999999
Q ss_pred ceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
++|++|+-+. |.+ .++..++.++.|+|+|||.+....
T Consensus 228 svDvaV~CLS---LMg-tn~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 228 SVDVAVFCLS---LMG-TNLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred cccEEEeeHh---hhc-ccHHHHHHHHHHHhccCceEEEEe
Confidence 9999997321 212 467889999999999999887544
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.6e-06 Score=78.47 Aligned_cols=106 Identities=24% Similarity=0.268 Sum_probs=84.5
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC--C
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--V 187 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~ 187 (405)
.|...+...||.+|+|-|+|+|.++..+++. +-.+++..|+.+ -.+.|++.++..++++++++.+.|+...-+. .
T Consensus 96 ~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks 175 (314)
T KOG2915|consen 96 MILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKS 175 (314)
T ss_pred HHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccc
Confidence 3455577899999999999999999999993 457999999999 9999999999999999999999999887654 4
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhcccCCc-EEE
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDG-IVL 226 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG-~li 226 (405)
..+|.|+.++. .+-..+-.+...||.+| +++
T Consensus 176 ~~aDaVFLDlP--------aPw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 176 LKADAVFLDLP--------APWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred cccceEEEcCC--------ChhhhhhhhHHHhhhcCceEE
Confidence 68999998653 22223333445777766 444
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.9e-07 Score=86.82 Aligned_cols=93 Identities=27% Similarity=0.259 Sum_probs=63.9
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE- 184 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 184 (405)
++.+.+.+.......++ .|||+-||.|.+++.+|+. +++|+|||.++ +++.|++++..|++. +++|+.++++++.
T Consensus 182 ~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~-n~~f~~~~~~~~~~ 258 (352)
T PF05958_consen 182 NEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGID-NVEFIRGDAEDFAK 258 (352)
T ss_dssp HHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCCC
T ss_pred HHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCC-cceEEEeeccchhH
Confidence 44455555554555555 8999999999999999997 56999999999 999999999999995 5999998876642
Q ss_pred ---------------CCCCceeEEEEccccccc
Q 015534 185 ---------------LPVTKVDIIISEWMGYFL 202 (405)
Q Consensus 185 ---------------~~~~~~D~Iv~~~~~~~l 202 (405)
+....+|+|+.++.-.++
T Consensus 259 ~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~ 291 (352)
T PF05958_consen 259 ALAKAREFNRLKGIDLKSFKFDAVILDPPRAGL 291 (352)
T ss_dssp HHCCS-GGTTGGGS-GGCTTESEEEE---TT-S
T ss_pred HHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCc
Confidence 112368999998754433
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.7e-06 Score=76.65 Aligned_cols=109 Identities=20% Similarity=0.181 Sum_probs=86.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc------CCCCce
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTKV 190 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~~ 190 (405)
...++++||||.=||..++..|.+ + ..+|+++|+++ ..+++.+..+..|...+|++++++..+.. .+.+.|
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 457789999999999888887773 2 45999999999 99999999999999999999999986642 235899
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCceeEE
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYL 234 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (405)
|+++.+. ...........+.+++++||+|+....-++.
T Consensus 151 DfaFvDa------dK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 151 DFAFVDA------DKDNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred eEEEEcc------chHHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 9999742 1223346777788999999999987654444
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.8e-07 Score=82.08 Aligned_cols=102 Identities=20% Similarity=0.075 Sum_probs=77.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcC--C-CCcEEEEEcccccccCCCCceeEEEEc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANG--F-SNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
...++||-||.|-|..+..+++... +|+-||+++ +++.+++.+.... + ..|++++.. +.+ ...++||+|+.+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvD 146 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICL 146 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEc
Confidence 3558999999999999999999864 999999999 9999999665421 2 256777752 211 123789999986
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEEecCceeEE
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYL 234 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (405)
.. ..+.+.+.+++.|+|||+++.+....+.
T Consensus 147 s~--------~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~ 176 (262)
T PRK00536 147 QE--------PDIHKIDGLKRMLKEDGVFISVAKHPLL 176 (262)
T ss_pred CC--------CChHHHHHHHHhcCCCcEEEECCCCccc
Confidence 42 1246778899999999999988766654
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.46 E-value=9.7e-07 Score=76.86 Aligned_cols=98 Identities=20% Similarity=0.227 Sum_probs=73.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHH-cCC--CeEEEEechH-HHHHHHHHHHHcC--------C-CCcEEEEEcccccccCC
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAK-AGA--AHVYAVECSQ-MANMAKQIVEANG--------F-SNVITVLKGKIEEIELP 186 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~-~g~--~~V~~vD~s~-~~~~a~~~~~~~~--------~-~~~i~~~~~d~~~~~~~ 186 (405)
+.+|.+.||+|+|+|.|+..++. -|. ..++|||.-+ .++.+++++...- + ..++.++.+|......+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 57999999999999999999986 343 2449999999 9999999987653 1 13578899999888777
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
..+||.|.+-. ....+.+++...|+|||.++
T Consensus 160 ~a~YDaIhvGA---------aa~~~pq~l~dqL~~gGrll 190 (237)
T KOG1661|consen 160 QAPYDAIHVGA---------AASELPQELLDQLKPGGRLL 190 (237)
T ss_pred cCCcceEEEcc---------CccccHHHHHHhhccCCeEE
Confidence 78999999731 11223334446678887765
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.3e-06 Score=77.85 Aligned_cols=96 Identities=27% Similarity=0.346 Sum_probs=69.4
Q ss_pred EEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccccccc
Q 015534 126 VLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLL 203 (405)
Q Consensus 126 VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~ 203 (405)
|.||||-.|.++..|.+.| +.+|+++|+++ -++.|++++...++.++|+++.+|-.+...+.+..|+|+...||.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG--- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGG--- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-H---
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCH---
Confidence 6899999999999999977 56899999999 999999999999999999999999765433323489999877653
Q ss_pred ChhhHHHHHHHHHhcccCCcEEE
Q 015534 204 FENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 204 ~~~~~~~~l~~~~~~LkpgG~li 226 (405)
..+..++.+....++....+|
T Consensus 78 --~lI~~ILe~~~~~~~~~~~lI 98 (205)
T PF04816_consen 78 --ELIIEILEAGPEKLSSAKRLI 98 (205)
T ss_dssp --HHHHHHHHHTGGGGTT--EEE
T ss_pred --HHHHHHHHhhHHHhccCCeEE
Confidence 345667776666665544555
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.6e-06 Score=77.39 Aligned_cols=108 Identities=16% Similarity=0.238 Sum_probs=64.8
Q ss_pred hccCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHH-------HcCC-CCcEEEEEcccccccC
Q 015534 116 QNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVE-------ANGF-SNVITVLKGKIEEIEL 185 (405)
Q Consensus 116 ~~~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~-------~~~~-~~~i~~~~~d~~~~~~ 185 (405)
+...+.++.+.+|||||.|...+.+|. .++.+++|||+.+ ..+.|+.... ..|. ..++++.++|+.+.+.
T Consensus 36 ~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~ 115 (205)
T PF08123_consen 36 DELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDF 115 (205)
T ss_dssp HHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHH
T ss_pred HHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHh
Confidence 335567889999999999988777776 7888899999999 8887765432 2333 2568889999865432
Q ss_pred C---CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 186 P---VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 186 ~---~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
. -...|+|+++-. .+.+..... +.....-||+|.+||-
T Consensus 116 ~~~~~s~AdvVf~Nn~---~F~~~l~~~-L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 116 VKDIWSDADVVFVNNT---CFDPDLNLA-LAELLLELKPGARIIS 156 (205)
T ss_dssp HHHHGHC-SEEEE--T---TT-HHHHHH-HHHHHTTS-TT-EEEE
T ss_pred HhhhhcCCCEEEEecc---ccCHHHHHH-HHHHHhcCCCCCEEEE
Confidence 1 146899998643 334444444 4566677899998873
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.1e-06 Score=77.37 Aligned_cols=102 Identities=22% Similarity=0.221 Sum_probs=77.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHH----c----------------------------
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA----N---------------------------- 167 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~----~---------------------------- 167 (405)
....+||--|||.|.++..+|+.|. .|.|.|.|- |+-..+-.+.. +
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 3457999999999999999999988 999999999 87555443321 0
Q ss_pred -------CCCCcEEEEEcccccccCCC---CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 168 -------GFSNVITVLKGKIEEIELPV---TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 168 -------~~~~~i~~~~~d~~~~~~~~---~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
..+.++....||+.++-.+. ++||+|++. +++..-..+-..++.+.++|||||..|
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~---FFIDTA~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC---FFIDTAENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE---EEeechHHHHHHHHHHHHHhccCCEEE
Confidence 01124556666776665443 699999984 556666778899999999999999776
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.5e-06 Score=86.82 Aligned_cols=106 Identities=20% Similarity=0.184 Sum_probs=81.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEcc
Q 015534 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEW 197 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~~ 197 (405)
.+..+||||||.|.+...+|+ .+-..++|+|+.. .+..|.+.+...++. ++.++..|+..+. ++++++|.|+.+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 467899999999999998888 5667999999999 888887778888884 5889988876443 5668899999865
Q ss_pred cccccc--C-hh--hHHHHHHHHHhcccCCcEEEec
Q 015534 198 MGYFLL--F-EN--MLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 198 ~~~~l~--~-~~--~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.+-+.- | .. .-+.++..+.++|+|||.+...
T Consensus 426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 433221 1 11 1267889999999999998753
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.6e-06 Score=80.54 Aligned_cols=88 Identities=22% Similarity=0.282 Sum_probs=68.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
..+|.++|||||++|.++..+++.|+ +|+|||..+|.... ... .+|+...+|...+..+.+.+|+++|++.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~L----~~~---~~V~h~~~d~fr~~p~~~~vDwvVcDmv- 279 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQSL----MDT---GQVEHLRADGFKFRPPRKNVDWLVCDMV- 279 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHhh----hCC---CCEEEEeccCcccCCCCCCCCEEEEecc-
Confidence 46889999999999999999999988 99999987744332 222 5688888888776543578999999865
Q ss_pred ccccChhhHHHHHHHHHhcccCC
Q 015534 200 YFLLFENMLNTVLYARDKWLVDD 222 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~Lkpg 222 (405)
..+..+...+.++|..|
T Consensus 280 ------e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 ------EKPARVAELMAQWLVNG 296 (357)
T ss_pred ------cCHHHHHHHHHHHHhcC
Confidence 34556667777787665
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.9e-06 Score=81.04 Aligned_cols=77 Identities=19% Similarity=0.183 Sum_probs=63.8
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcC--CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCC--Cce
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPV--TKV 190 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~--~~~ 190 (405)
....++..+||++||.|..+..+++.. ..+|+|+|.++ +++.|++.+.. .++++++++++.++. ++. .++
T Consensus 15 L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~~~~~v 91 (296)
T PRK00050 15 LAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAEGLGKV 91 (296)
T ss_pred hCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHcCCCcc
Confidence 445678899999999999999999963 46999999999 99999988765 368999999998864 221 279
Q ss_pred eEEEEcc
Q 015534 191 DIIISEW 197 (405)
Q Consensus 191 D~Iv~~~ 197 (405)
|.|++++
T Consensus 92 DgIl~DL 98 (296)
T PRK00050 92 DGILLDL 98 (296)
T ss_pred CEEEECC
Confidence 9999864
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.3e-06 Score=77.38 Aligned_cols=106 Identities=13% Similarity=0.180 Sum_probs=75.9
Q ss_pred CCCEEEEEcCCCc----HHHHHHHHcC------CCeEEEEechH-HHHHHHHHHHH-----cC-----------------
Q 015534 122 KDKVVLDVGAGTG----ILSLFCAKAG------AAHVYAVECSQ-MANMAKQIVEA-----NG----------------- 168 (405)
Q Consensus 122 ~~~~VLDiGcG~G----~l~~~la~~g------~~~V~~vD~s~-~~~~a~~~~~~-----~~----------------- 168 (405)
...+|+-+||+|| .+++.+.+.+ .-+|+|+|+|. +++.|++-.=. .+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4679999999999 5677777743 24899999999 99998762200 11
Q ss_pred ------CCCcEEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 169 ------FSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 169 ------~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+...|.|...|+.+-....+.||+|+|.-+.-++ .......++...+..|+|||.++..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYF-d~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYF-DEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEee-CHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 1234667777776655223789999995443333 4556778999999999999998854
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.1e-06 Score=74.80 Aligned_cols=107 Identities=24% Similarity=0.304 Sum_probs=77.6
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcE-EEEEcccccccCC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVI-TVLKGKIEEIELP 186 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i-~~~~~d~~~~~~~ 186 (405)
.+..++....-..+++++||||+.||.++..+.+.|+++|+|+|..- .+..-- +.. .++ .+...++..+...
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kL---R~d---~rV~~~E~tN~r~l~~~ 139 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKL---RND---PRVIVLERTNVRYLTPE 139 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhH---hcC---CcEEEEecCChhhCCHH
Confidence 55666666666788999999999999999999999999999999987 554321 111 233 3444555554321
Q ss_pred --CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 187 --VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 187 --~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.+..|+++|+.. + -.+..++..+..+++|+|.+++
T Consensus 140 ~~~~~~d~~v~DvS--F----ISL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 140 DFTEKPDLIVIDVS--F----ISLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred HcccCCCeEEEEee--h----hhHHHHHHHHHHhcCCCceEEE
Confidence 257899999642 1 2556788888899999998773
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.8e-07 Score=88.27 Aligned_cols=119 Identities=15% Similarity=0.251 Sum_probs=76.7
Q ss_pred hHHHHHHHHHhccCC--CCC--CEEEEEcCCCcHHHHHHHHcCCCeEEEE---echH-HHHHHHHHHHHcCCCCcEEEEE
Q 015534 106 RTKSYQNVIYQNKFL--FKD--KVVLDVGAGTGILSLFCAKAGAAHVYAV---ECSQ-MANMAKQIVEANGFSNVITVLK 177 (405)
Q Consensus 106 r~~~~~~~i~~~~~~--~~~--~~VLDiGcG~G~l~~~la~~g~~~V~~v---D~s~-~~~~a~~~~~~~~~~~~i~~~~ 177 (405)
....|.+.|.+.... ..+ .++||+|||+|.++..+...+. .+..+ |..+ .+..|.+ .|++.-+- .
T Consensus 97 Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfale----RGvpa~~~--~ 169 (506)
T PF03141_consen 97 GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALE----RGVPAMIG--V 169 (506)
T ss_pred CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhh----cCcchhhh--h
Confidence 345677767665544 223 4799999999999999999865 22222 3334 4444443 35543221 2
Q ss_pred cccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCceeE
Q 015534 178 GKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLY 233 (405)
Q Consensus 178 ~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~ 233 (405)
.-...++++++.||+|.|.-.. ......-..++-++.|+|+|||.++.+...++
T Consensus 170 ~~s~rLPfp~~~fDmvHcsrc~--i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 170 LGSQRLPFPSNAFDMVHCSRCL--IPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred hccccccCCccchhhhhccccc--ccchhcccceeehhhhhhccCceEEecCCccc
Confidence 2346788889999999984211 11111113477889999999999998887777
|
; GO: 0008168 methyltransferase activity |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.2e-05 Score=76.40 Aligned_cols=115 Identities=21% Similarity=0.139 Sum_probs=86.8
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcC---CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCce
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAG---AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKV 190 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g---~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~ 190 (405)
+...+|.+|||+.++.|.=+..+++.. ...|+|+|.++ -+...++++++.|+.+ +.+++.|...+. ...++|
T Consensus 152 L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~~~~f 230 (355)
T COG0144 152 LDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAELLPGGEKF 230 (355)
T ss_pred cCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecccccccccccccCcC
Confidence 567899999999999999888888853 23679999999 9999999999999976 788888876543 222369
Q ss_pred eEEEEcccccc--cc----------Chh-------hHHHHHHHHHhcccCCcEEEecCceeE
Q 015534 191 DIIISEWMGYF--LL----------FEN-------MLNTVLYARDKWLVDDGIVLPDKASLY 233 (405)
Q Consensus 191 D~Iv~~~~~~~--l~----------~~~-------~~~~~l~~~~~~LkpgG~lip~~~~~~ 233 (405)
|.|+.+..... .. ... ....++....++|||||.++.+++++.
T Consensus 231 D~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 231 DRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred cEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 99998642221 11 011 124778888999999999998776543
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.8e-06 Score=82.07 Aligned_cols=108 Identities=19% Similarity=0.155 Sum_probs=93.5
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
....++..++|+|||.|.....++..+...++|+|.++ .+..+........+.++..++.+|+-..++++..||.+.+.
T Consensus 106 ~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~l 185 (364)
T KOG1269|consen 106 ESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFL 185 (364)
T ss_pred hcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEE
Confidence 44567779999999999999999997777999999999 99988888888888888888999999999999999999983
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
....+.+....++.++.++++|||.++..
T Consensus 186 ---d~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 186 ---EVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred ---eecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 33556678889999999999999998854
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.3e-06 Score=75.28 Aligned_cols=94 Identities=28% Similarity=0.355 Sum_probs=59.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcC--CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEccccccc--------CC--CCc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------LP--VTK 189 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g--~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~--~~~ 189 (405)
++.+|||+||++|.++..+++.+ ..+|+|+|+.++ ... ..+.++.+|+.+.. ++ .++
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc----------ccc-cceeeeecccchhhHHHhhhhhccccccC
Confidence 44899999999999999999987 679999999873 111 23677777765432 11 268
Q ss_pred eeEEEEccccccccC----h----hhHHHHHHHHHhcccCCcEEE
Q 015534 190 VDIIISEWMGYFLLF----E----NMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~----~----~~~~~~l~~~~~~LkpgG~li 226 (405)
+|+|+|+........ + ......+..+..+|+|||.+|
T Consensus 92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v 136 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFV 136 (181)
T ss_dssp ESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred cceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEE
Confidence 999999763222111 1 112233334457899999876
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.4e-06 Score=77.36 Aligned_cols=85 Identities=24% Similarity=0.300 Sum_probs=67.3
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC-
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV- 187 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~- 187 (405)
..+.|.+.....++..|||||+|.|.++..+++.+ ++|+++|+++ +++..++.+... .+++++.+|+.++..+.
T Consensus 18 ~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~---~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 18 IADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASN---PNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp HHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTC---SSEEEEES-TTTSCGGGH
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhc---ccceeeecchhccccHHh
Confidence 34444444455688999999999999999999987 7999999999 999999876622 57999999999887652
Q ss_pred --CceeEEEEccc
Q 015534 188 --TKVDIIISEWM 198 (405)
Q Consensus 188 --~~~D~Iv~~~~ 198 (405)
.....|+++..
T Consensus 94 ~~~~~~~vv~NlP 106 (262)
T PF00398_consen 94 LKNQPLLVVGNLP 106 (262)
T ss_dssp CSSSEEEEEEEET
T ss_pred hcCCceEEEEEec
Confidence 36778888753
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.3e-06 Score=75.04 Aligned_cols=99 Identities=20% Similarity=0.196 Sum_probs=74.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEEc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIISE 196 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv~~ 196 (405)
....|+|.-||.|..++..|..|. .|+++|++| -+..|+++++-.|++++|+|++||+.++. +....+|+|+..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 456899999999999988888866 999999999 99999999999999999999999998763 333557788875
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcE
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGI 224 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~ 224 (405)
+... +++.+..-+..+...++|.|.
T Consensus 173 ppwg---gp~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 173 PPWG---GPSYLRADVYDLETHLKPMGT 197 (263)
T ss_pred CCCC---CcchhhhhhhhhhhhcchhHH
Confidence 4311 222333333344455555543
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.16 E-value=1e-05 Score=77.53 Aligned_cols=113 Identities=20% Similarity=0.132 Sum_probs=72.6
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHc--------CCCeEEEEechH-HHHHHHHHHHHcCCCC-cEEEEEcccccc
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA--------GAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKIEEI 183 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~--------g~~~V~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~~~~ 183 (405)
+.......++.+|||.+||+|.+...+.+. ....++|+|+++ ++..|+-++.-.+... ...+..+|....
T Consensus 38 ~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~ 117 (311)
T PF02384_consen 38 MVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLEN 117 (311)
T ss_dssp HHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTS
T ss_pred HHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccc
Confidence 333345567789999999999998887762 456999999999 9999998877666542 245788887554
Q ss_pred cCC--CCceeEEEEccccccc--cCh----------------hhHHHHHHHHHhcccCCcEEE
Q 015534 184 ELP--VTKVDIIISEWMGYFL--LFE----------------NMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 184 ~~~--~~~~D~Iv~~~~~~~l--~~~----------------~~~~~~l~~~~~~LkpgG~li 226 (405)
+.. ..+||+|++++..... ... ..--.++..+.+.|++||++.
T Consensus 118 ~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~ 180 (311)
T PF02384_consen 118 DKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAA 180 (311)
T ss_dssp HSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEE
T ss_pred cccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccccccee
Confidence 432 3789999998642211 000 011246677789999999864
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.7e-06 Score=82.61 Aligned_cols=77 Identities=30% Similarity=0.338 Sum_probs=67.2
Q ss_pred HhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc
Q 015534 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (405)
Q Consensus 105 ~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (405)
.-.+.+...+.....+..++.+||+-||||.+++.+++. +++|+|||+++ .++.|+.++..||++ +.+|+++-.+++
T Consensus 366 ~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~gqaE~~ 443 (534)
T KOG2187|consen 366 SAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGIS-NATFIVGQAEDL 443 (534)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCcc-ceeeeecchhhc
Confidence 344566667777788888899999999999999999886 78999999999 999999999999996 599999977665
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.6e-05 Score=66.94 Aligned_cols=75 Identities=21% Similarity=0.403 Sum_probs=60.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHH-----cCCCeEEEEechH-HHHHHHHHHHHcC--CCCcEEEEEcccccccCCCCcee
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAK-----AGAAHVYAVECSQ-MANMAKQIVEANG--FSNVITVLKGKIEEIELPVTKVD 191 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~-----~g~~~V~~vD~s~-~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D 191 (405)
..+..+|+|+|||.|.++..++. ....+|+++|.++ .++.|.++.+..+ +..++++..+++.+... ....+
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 101 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPD 101 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence 36678999999999999999999 5456999999999 9999999988877 54567777777765533 36778
Q ss_pred EEEE
Q 015534 192 IIIS 195 (405)
Q Consensus 192 ~Iv~ 195 (405)
+++.
T Consensus 102 ~~vg 105 (141)
T PF13679_consen 102 ILVG 105 (141)
T ss_pred EEEE
Confidence 8886
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.7e-05 Score=68.70 Aligned_cols=100 Identities=25% Similarity=0.262 Sum_probs=68.7
Q ss_pred hccCCCCCCEEEEEcCCCcHHHHHHHHc-CC-CeEEEEechHHHHHHHHHHHHcCCCCcEEEEEccccccc--------C
Q 015534 116 QNKFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------L 185 (405)
Q Consensus 116 ~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~-~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~ 185 (405)
+..-..++.+|+|||+-.|.++..+++. |. .+|+|+|+.||- .+ ..+.++++|++.-. +
T Consensus 39 k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----------~~-~~V~~iq~d~~~~~~~~~l~~~l 107 (205)
T COG0293 39 KFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----------PI-PGVIFLQGDITDEDTLEKLLEAL 107 (205)
T ss_pred hcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----------cC-CCceEEeeeccCccHHHHHHHHc
Confidence 3334567899999999999999999994 32 359999998821 12 23899999997754 3
Q ss_pred CCCceeEEEEccccccc-----cC---hhhHHHHHHHHHhcccCCcEEE
Q 015534 186 PVTKVDIIISEWMGYFL-----LF---ENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l-----~~---~~~~~~~l~~~~~~LkpgG~li 226 (405)
+..++|+|+|++....- .+ .......+.-...+|+|||.++
T Consensus 108 ~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv 156 (205)
T COG0293 108 GGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFV 156 (205)
T ss_pred CCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEE
Confidence 34568999997643211 11 1112344455568999999987
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.1e-05 Score=67.81 Aligned_cols=103 Identities=20% Similarity=0.231 Sum_probs=79.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEcc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEW 197 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~~ 197 (405)
.+|.+||+||-|.|+....+-++...+=+.||..| .++..+...-.. .++|.++.+..++.. ++++.||-|+-+.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e--k~nViil~g~WeDvl~~L~d~~FDGI~yDT 177 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE--KENVIILEGRWEDVLNTLPDKHFDGIYYDT 177 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc--ccceEEEecchHhhhccccccCcceeEeec
Confidence 67889999999999999999887766778899999 888776543222 256888888888764 5678899999754
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
. ...-+++..+.+.+.++|||+|++-..
T Consensus 178 y---~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 178 Y---SELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred h---hhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 3 222356677888899999999987643
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.2e-05 Score=70.26 Aligned_cols=83 Identities=16% Similarity=0.147 Sum_probs=66.8
Q ss_pred hccCCCCCC--EEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc------C--CCCcEEEEEccccccc
Q 015534 116 QNKFLFKDK--VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN------G--FSNVITVLKGKIEEIE 184 (405)
Q Consensus 116 ~~~~~~~~~--~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~------~--~~~~i~~~~~d~~~~~ 184 (405)
+...+.+|. +|||+-+|+|..++.++..|+ +|+++|.++ +....++.+... + +..+++++++|..++.
T Consensus 80 kAvglk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L 158 (250)
T PRK10742 80 KAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL 158 (250)
T ss_pred HHhCCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHH
Confidence 334456666 999999999999999999988 499999999 999999888874 2 2257999999998764
Q ss_pred C-CCCceeEEEEcccc
Q 015534 185 L-PVTKVDIIISEWMG 199 (405)
Q Consensus 185 ~-~~~~~D~Iv~~~~~ 199 (405)
- ....||+|+.++|.
T Consensus 159 ~~~~~~fDVVYlDPMf 174 (250)
T PRK10742 159 TDITPRPQVVYLDPMF 174 (250)
T ss_pred hhCCCCCcEEEECCCC
Confidence 2 12479999999873
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.9e-05 Score=71.85 Aligned_cols=77 Identities=26% Similarity=0.277 Sum_probs=49.8
Q ss_pred CCEEEEEcCCCc-HHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHc-CCCCcEEEEEccccccc-----CCCCceeEE
Q 015534 123 DKVVLDVGAGTG-ILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEAN-GFSNVITVLKGKIEEIE-----LPVTKVDII 193 (405)
Q Consensus 123 ~~~VLDiGcG~G-~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~-----~~~~~~D~I 193 (405)
..++||||||.. +..+..++ .|. +++|+|+++ .++.|++++..| ++.++|+++...-.... .+.+.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 458999999997 55666666 544 999999999 999999999999 99999999876433221 234789999
Q ss_pred EEccccc
Q 015534 194 ISEWMGY 200 (405)
Q Consensus 194 v~~~~~~ 200 (405)
+|++..|
T Consensus 182 mCNPPFy 188 (299)
T PF05971_consen 182 MCNPPFY 188 (299)
T ss_dssp EE-----
T ss_pred ecCCccc
Confidence 9998533
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.02 E-value=8.6e-05 Score=65.98 Aligned_cols=102 Identities=20% Similarity=0.198 Sum_probs=72.0
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHH-cC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCcee
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVD 191 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~-~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D 191 (405)
..+.+|.+||-+|+.+|.....++. .| ...|+|||.|+ ..+..-..+++. .+|--+..|+..-. .--+.+|
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~lv~~VD 145 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRMLVEMVD 145 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTTTS--EE
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhccccccc
Confidence 4578899999999999999999998 55 66999999999 665555555544 45777888886532 1136899
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|+++.. ......-++..+..+||+||.++.
T Consensus 146 vI~~DVa-----Qp~Qa~I~~~Na~~fLk~gG~~~i 176 (229)
T PF01269_consen 146 VIFQDVA-----QPDQARIAALNARHFLKPGGHLII 176 (229)
T ss_dssp EEEEE-S-----STTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEecCC-----ChHHHHHHHHHHHhhccCCcEEEE
Confidence 9998642 335666777888899999999874
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.1e-05 Score=66.12 Aligned_cols=58 Identities=33% Similarity=0.471 Sum_probs=50.2
Q ss_pred EEEEEcCCCcHHHHHHHHcCCC-eEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc
Q 015534 125 VVLDVGAGTGILSLFCAKAGAA-HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (405)
Q Consensus 125 ~VLDiGcG~G~l~~~la~~g~~-~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (405)
+|||||||.|.++..+++.+.. +|+++|+++ +.+.++++++.+++++ +++++..+.+-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeeeCC
Confidence 4899999999999999997653 899999999 9999999999998854 88888776543
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.3e-06 Score=66.59 Aligned_cols=99 Identities=22% Similarity=0.340 Sum_probs=44.8
Q ss_pred EEEcCCCcHHHHHHHHc----CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEccccc
Q 015534 127 LDVGAGTGILSLFCAKA----GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEWMGY 200 (405)
Q Consensus 127 LDiGcG~G~l~~~la~~----g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~~~~~ 200 (405)
||||+..|..+..+++. +..+++++|..+..+.+++.++..++.++++++.++..+.. ++.+++|+|+...-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-- 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC--
Confidence 68999999888887762 22379999998854455666666777788999999997652 22479999997642
Q ss_pred cccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 201 FLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+........+..+.+.|+|||+++..+
T Consensus 79 --H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 --HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred --CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 122445566777889999999998754
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00012 Score=61.46 Aligned_cols=98 Identities=26% Similarity=0.330 Sum_probs=67.3
Q ss_pred EEEEcCCCcHHHHHHHHcCC--CeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc--ccCCC-CceeEEEEcccc
Q 015534 126 VLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE--IELPV-TKVDIIISEWMG 199 (405)
Q Consensus 126 VLDiGcG~G~l~~~la~~g~--~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~-~~~D~Iv~~~~~ 199 (405)
++|+|||+|... .+++... ..++++|+++ ++..++......+. ..+.+...+... +++.. ..||++.+....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL-GLVDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC-CceEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999876 4444322 3899999999 88886555433211 116788888776 56654 489999433221
Q ss_pred ccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+ . .. ....+..+.+.|+|+|.++...
T Consensus 130 ~-~--~~-~~~~~~~~~~~l~~~g~~~~~~ 155 (257)
T COG0500 130 H-L--LP-PAKALRELLRVLKPGGRLVLSD 155 (257)
T ss_pred h-c--CC-HHHHHHHHHHhcCCCcEEEEEe
Confidence 1 1 12 6778888999999999987544
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00014 Score=68.14 Aligned_cols=110 Identities=16% Similarity=0.103 Sum_probs=65.9
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH-c-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-A-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (405)
....|........+.+|||+|||+|..+..+.. . ....++++|.|+ |++.++..+....-....... ........+
T Consensus 21 vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~ 99 (274)
T PF09243_consen 21 VLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWR-RVLYRDFLP 99 (274)
T ss_pred HHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhh-hhhhccccc
Confidence 334444444556778999999999976655555 2 356899999999 999999987654321111111 111111111
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcccC
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVD 221 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkp 221 (405)
....|+|++.-+..-+.. .....+++.+.+.+.+
T Consensus 100 ~~~~DLvi~s~~L~EL~~-~~r~~lv~~LW~~~~~ 133 (274)
T PF09243_consen 100 FPPDDLVIASYVLNELPS-AARAELVRSLWNKTAP 133 (274)
T ss_pred CCCCcEEEEehhhhcCCc-hHHHHHHHHHHHhccC
Confidence 234499998544444444 4555666666666655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.9e-05 Score=71.62 Aligned_cols=113 Identities=19% Similarity=0.132 Sum_probs=84.6
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDI 192 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~ 192 (405)
....++.+|||+.+|.|.=+..+++. + ...|+|+|+++ -+...++++.+.|+. ++.++..|..... .....||.
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~~~~~~~fd~ 159 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDPKKPESKFDR 159 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHHHHHTTTEEE
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeeccccccccccccccch
Confidence 34678899999999999998888883 2 56999999999 999999999999985 4888878887762 22246999
Q ss_pred EEEccccccc----cCh--------hh-------HHHHHHHHHhcc----cCCcEEEecCce
Q 015534 193 IISEWMGYFL----LFE--------NM-------LNTVLYARDKWL----VDDGIVLPDKAS 231 (405)
Q Consensus 193 Iv~~~~~~~l----~~~--------~~-------~~~~l~~~~~~L----kpgG~lip~~~~ 231 (405)
|+.+..-... .++ .. ...++....+++ ||||+++.++++
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 9985422211 111 11 146788888999 999999966544
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.90 E-value=6.2e-05 Score=73.95 Aligned_cols=100 Identities=16% Similarity=0.203 Sum_probs=79.4
Q ss_pred EEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccccccc
Q 015534 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLL 203 (405)
Q Consensus 125 ~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~ 203 (405)
++|-+|||.-.++..+.+.|...|+.+|+|+ .++.+...-.... .-+.+...|+..+.+++++||+|+...-+..+.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~--~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER--PEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC--cceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 8999999999999999999999999999999 7777665443221 348999999999999999999999865333332
Q ss_pred -Ch------hhHHHHHHHHHhcccCCcEEE
Q 015534 204 -FE------NMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 204 -~~------~~~~~~l~~~~~~LkpgG~li 226 (405)
.+ ......+..+.++|+|||+.+
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~ 158 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYI 158 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEE
Confidence 22 123466788899999999965
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.90 E-value=7.9e-06 Score=68.21 Aligned_cols=116 Identities=20% Similarity=0.254 Sum_probs=80.6
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCC--CcEEEEEcccccc
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFS--NVITVLKGKIEEI 183 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~--~~i~~~~~d~~~~ 183 (405)
.+.-.+.+......|.+||++|.|- |..++++|. +....|.-.|-++ .++..++....|..+ .++.++.-+....
T Consensus 16 ala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~a 95 (201)
T KOG3201|consen 16 ALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGA 95 (201)
T ss_pred HHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhh
Confidence 4444455555556778999999995 666777777 6678999999999 999999888777332 2333333333222
Q ss_pred c--CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 184 E--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 184 ~--~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
. .....||+|+|. .+++..+.-..+.+.++.+|+|.|..++
T Consensus 96 qsq~eq~tFDiIlaA---DClFfdE~h~sLvdtIk~lL~p~g~Al~ 138 (201)
T KOG3201|consen 96 QSQQEQHTFDIILAA---DCLFFDEHHESLVDTIKSLLRPSGRALL 138 (201)
T ss_pred HHHHhhCcccEEEec---cchhHHHHHHHHHHHHHHHhCcccceeE
Confidence 1 223689999994 3344445667888999999999998554
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00024 Score=62.88 Aligned_cols=94 Identities=21% Similarity=0.233 Sum_probs=76.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
.+.++.||||-.|.++..+.+. .+..+++.|+++ .++.|.+++.++++.+++++..+|....--++..+|+|+...||
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMG 95 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMG 95 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCc
Confidence 4556999999999999999995 478999999999 99999999999999999999999985443344589999987765
Q ss_pred ccccChhhHHHHHHHHHhccc
Q 015534 200 YFLLFENMLNTVLYARDKWLV 220 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~Lk 220 (405)
. ..+..++.+....|+
T Consensus 96 G-----~lI~~ILee~~~~l~ 111 (226)
T COG2384 96 G-----TLIREILEEGKEKLK 111 (226)
T ss_pred H-----HHHHHHHHHhhhhhc
Confidence 3 344566666655555
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00011 Score=69.19 Aligned_cols=116 Identities=18% Similarity=0.192 Sum_probs=84.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHH--HH-c--CC-CCcEEEEEcccccccC-CCCcee
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIV--EA-N--GF-SNVITVLKGKIEEIEL-PVTKVD 191 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~--~~-~--~~-~~~i~~~~~d~~~~~~-~~~~~D 191 (405)
..-.+||-+|.|.|.....+.+.+ ..+++-||.+| |++.++++. .+ | .+ ..+++++..|+.++.- ..+.||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 344689999999999999999986 78999999999 999998433 22 2 12 2689999999988742 246899
Q ss_pred EEEEccccccccChh--hHHHHHHHHHhcccCCcEEEecCceeEEEE
Q 015534 192 IIISEWMGYFLLFEN--MLNTVLYARDKWLVDDGIVLPDKASLYLTA 236 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~--~~~~~l~~~~~~LkpgG~lip~~~~~~~~~ 236 (405)
+||.+..+..-.... .-..+...+.+.|+++|.++.+....|..|
T Consensus 368 ~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp 414 (508)
T COG4262 368 VVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTP 414 (508)
T ss_pred EEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCC
Confidence 999865332111001 113556667899999999998876666543
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.85 E-value=7.4e-05 Score=76.84 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=55.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcC---------CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CC
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAG---------AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LP 186 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g---------~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~ 186 (405)
.+.+|||.|||+|.+...+++.. ...++|+|+++ .+..|+.++...+. ..+.+...|..... ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccccc
Confidence 45699999999999988887632 14799999999 99999998877652 12555655543221 11
Q ss_pred CCceeEEEEccc
Q 015534 187 VTKVDIIISEWM 198 (405)
Q Consensus 187 ~~~~D~Iv~~~~ 198 (405)
.+.||+||+|+.
T Consensus 110 ~~~fD~IIgNPP 121 (524)
T TIGR02987 110 LDLFDIVITNPP 121 (524)
T ss_pred cCcccEEEeCCC
Confidence 258999999974
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=9.1e-05 Score=60.94 Aligned_cols=103 Identities=15% Similarity=0.140 Sum_probs=78.8
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
....+..+.+|+|+|.|.+.+.+++.|...-+|+|+++ .+.+++-+.-+.|......|...|+....+.+-.+=+|+.
T Consensus 68 l~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFg- 146 (199)
T KOG4058|consen 68 LRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFG- 146 (199)
T ss_pred ccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEee-
Confidence 33455568999999999999999999888999999999 9999999999999988899999999888775334434432
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
-+..++.+-..+..-+..+..++-+
T Consensus 147 -------aes~m~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 147 -------AESVMPDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred -------hHHHHhhhHHHHHhhCcCCCeEEEE
Confidence 2345555556665566667777643
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.83 E-value=6.1e-05 Score=69.29 Aligned_cols=109 Identities=17% Similarity=0.161 Sum_probs=68.2
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCC----------------C-----------
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF----------------S----------- 170 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~----------------~----------- 170 (405)
...+|.++||||||.-+.....|..-+.+++..|.++ ..+..++-++..+- .
T Consensus 53 g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 53 GGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp SSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 3456789999999997665444443377999999999 87766665433210 0
Q ss_pred CcE-EEEEccccccc-CC-----CCceeEEEEcccccc-ccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 171 NVI-TVLKGKIEEIE-LP-----VTKVDIIISEWMGYF-LLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 171 ~~i-~~~~~d~~~~~-~~-----~~~~D~Iv~~~~~~~-l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
..| .++..|+.+.. +. +++||+|++...... ..........++.+.++|||||.+|.
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil 197 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLIL 197 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 113 37778887643 21 135999998543322 23445667888999999999999984
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0001 Score=59.09 Aligned_cols=73 Identities=18% Similarity=0.199 Sum_probs=57.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
...+++|+|||++.|-.++.++-.|+++|+++|+++ ..+..+++++.+.+-++..... +++-.-+.||+.+..
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~----eW~~~Y~~~Di~~iD 99 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG----EWNGEYEDVDIFVMD 99 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecc----cccccCCCcceEEEE
Confidence 357899999999999999999999999999999999 9999999998876544332222 222234789998863
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0005 Score=63.89 Aligned_cols=104 Identities=15% Similarity=0.236 Sum_probs=65.1
Q ss_pred CCCEEEEEcCCCc-HHHHHHHH-cC-CCeEEEEechH-HHHHHHHHHH-HcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 122 KDKVVLDVGAGTG-ILSLFCAK-AG-AAHVYAVECSQ-MANMAKQIVE-ANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 122 ~~~~VLDiGcG~G-~l~~~la~-~g-~~~V~~vD~s~-~~~~a~~~~~-~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
.+.+|+=||||.= ..++.+++ .| ...|+++|+++ .++.+++.+. ..+++.+++|+.+|..+.......||+|+..
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 3469999999986 44556665 33 34899999999 9999999888 5677888999999998776544789999864
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.+- ......-..++..+.+.++||+.++.
T Consensus 200 alV--g~~~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 200 ALV--GMDAEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp TT---S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred hhc--ccccchHHHHHHHHHhhCCCCcEEEE
Confidence 321 11223567899999999999998874
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00016 Score=68.32 Aligned_cols=95 Identities=20% Similarity=0.209 Sum_probs=74.8
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccccc
Q 015534 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFL 202 (405)
Q Consensus 124 ~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l 202 (405)
...+|+|.|.|.++..+... +.+|-++++.. .+..++..+. .| |+.+-+|+.+- .| +.|+|++-|+.+.+
T Consensus 179 ~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-~P--~~daI~mkWiLhdw 249 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-TP--KGDAIWMKWILHDW 249 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-CC----cceeccccccc-CC--CcCeEEEEeecccC
Confidence 68999999999998888884 56899999988 6655555543 33 78888998776 43 56799998886666
Q ss_pred cChhhHHHHHHHHHhcccCCcEEEec
Q 015534 203 LFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 203 ~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.. ++.-+++++++..|+|||.||.-
T Consensus 250 tD-edcvkiLknC~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 250 TD-EDCVKILKNCKKSLPPGGKIIVV 274 (342)
T ss_pred Ch-HHHHHHHHHHHHhCCCCCEEEEE
Confidence 44 46679999999999999998753
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0006 Score=65.04 Aligned_cols=113 Identities=15% Similarity=0.091 Sum_probs=74.0
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc----C-CCeEEEEechH-HHHHHHHHHHHcCCCC-cEEEEEcccccc
Q 015534 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA----G-AAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKIEEI 183 (405)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~----g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~~~~ 183 (405)
...|... ..++..++|+|||+|.-+..+.++ + ..+++++|+|. +++.+.+.+....++. .+.-+.+|..+.
T Consensus 67 ~~~Ia~~--i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 67 SSDIAAS--IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred HHHHHHh--cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 3444432 346678999999999765554441 1 34799999999 9999999888444432 234488888663
Q ss_pred c--CC----CCceeEEEEcccccccc--ChhhHHHHHHHHHh-cccCCcEEEe
Q 015534 184 E--LP----VTKVDIIISEWMGYFLL--FENMLNTVLYARDK-WLVDDGIVLP 227 (405)
Q Consensus 184 ~--~~----~~~~D~Iv~~~~~~~l~--~~~~~~~~l~~~~~-~LkpgG~lip 227 (405)
. ++ .....+++. +|+.+. .......+++.+.+ .|+|||.++.
T Consensus 145 l~~l~~~~~~~~~r~~~f--lGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 145 LAWLKRPENRSRPTTILW--LGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred HhhcccccccCCccEEEE--eCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 1 11 134566665 232222 23455688889988 9999999875
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=3.1e-05 Score=70.96 Aligned_cols=96 Identities=18% Similarity=0.079 Sum_probs=76.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
..+..+||+|||.|-.... .+...++++|.+. .+..|++. +...+..+|+..++.+..+||.+++..+.
T Consensus 44 ~~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~~~s~d~~lsiavi 113 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFREESFDAALSIAVI 113 (293)
T ss_pred CCcceeeecccCCcccCcC---CCcceeeecchhhhhccccccC-------CCceeehhhhhcCCCCCCccccchhhhhh
Confidence 3488999999999954321 2445799999999 88887753 21267889999999888999999997777
Q ss_pred ccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
+++.....-..+++++.+.|+|||..+
T Consensus 114 hhlsT~~RR~~~l~e~~r~lrpgg~~l 140 (293)
T KOG1331|consen 114 HHLSTRERRERALEELLRVLRPGGNAL 140 (293)
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCCceE
Confidence 777776677789999999999999876
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00064 Score=59.22 Aligned_cols=102 Identities=23% Similarity=0.226 Sum_probs=75.6
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCceeE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDI 192 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~ 192 (405)
..+.+|.+||=+|+-+|......+. .|...|+|||.|+ +....-..+.+. +++--+.+|+..-. .--+.+|+
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~Y~~~Ve~VDv 148 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEKYRHLVEKVDV 148 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHHhhhhcccccE
Confidence 4578899999999999999999988 6777999999999 655554444443 45777778876432 11367999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+.+.. ......-+...+..+||+||.++.
T Consensus 149 iy~DVA-----Qp~Qa~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 149 IYQDVA-----QPNQAEILADNAEFFLKKGGYVVI 178 (231)
T ss_pred EEEecC-----CchHHHHHHHHHHHhcccCCeEEE
Confidence 998642 234556677888999999997663
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0002 Score=63.37 Aligned_cols=84 Identities=21% Similarity=0.203 Sum_probs=65.4
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCC---CCceeEEEEccccc
Q 015534 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDIIISEWMGY 200 (405)
Q Consensus 124 ~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~Iv~~~~~~ 200 (405)
.++|||||=+...... ..+.-.|++||+++ ..-.+.+.|+.+.++| .++||+|++.++..
T Consensus 53 lrlLEVGals~~N~~s--~~~~fdvt~IDLns---------------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLN 115 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSGWFDVTRIDLNS---------------QHPGILQQDFMERPLPKNESEKFDVISLSLVLN 115 (219)
T ss_pred ceEEeecccCCCCccc--ccCceeeEEeecCC---------------CCCCceeeccccCCCCCCcccceeEEEEEEEEe
Confidence 6999999986543322 34455799999976 1234677888887764 57999999999888
Q ss_pred cccChhhHHHHHHHHHhcccCCcE
Q 015534 201 FLLFENMLNTVLYARDKWLVDDGI 224 (405)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~ 224 (405)
++.....--.++..+.++|+|+|.
T Consensus 116 fVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 116 FVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred eCCCHHHHHHHHHHHHHHhCCCCc
Confidence 887777777899999999999998
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=2.1e-05 Score=68.39 Aligned_cols=106 Identities=25% Similarity=0.210 Sum_probs=70.0
Q ss_pred HHHHHHHhccC--CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015534 109 SYQNVIYQNKF--LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (405)
Q Consensus 109 ~~~~~i~~~~~--~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (405)
.|.+.+.-..+ ...+.++||+|+|.|-++..++.. ..+|+|.|.|. |....++. +. .++ ...+..-
T Consensus 97 QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~y----nVl--~~~ew~~ 165 (288)
T KOG3987|consen 97 QFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----NY----NVL--TEIEWLQ 165 (288)
T ss_pred HHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----CC----cee--eehhhhh
Confidence 45554443222 234479999999999999998886 56899999999 98877653 21 111 1111212
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccC-CcEEEec
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVD-DGIVLPD 228 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkp-gG~lip~ 228 (405)
.+-++|+|.|- ..+..-.++-+++..++.+|.| +|++|.+
T Consensus 166 t~~k~dli~cl---NlLDRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 166 TDVKLDLILCL---NLLDRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred cCceeehHHHH---HHHHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 23579999982 2233334566888999999999 8887754
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00026 Score=58.68 Aligned_cols=80 Identities=23% Similarity=0.322 Sum_probs=57.4
Q ss_pred eEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEccccccccCh-------hhHHHHHHHHH
Q 015534 147 HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEWMGYFLLFE-------NMLNTVLYARD 216 (405)
Q Consensus 147 ~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~~~~~~l~~~-------~~~~~~l~~~~ 216 (405)
+|+|.|+-+ +++..++++...++.+++++++..-+.+. .+.+++|+++.|. ||...+. ...-..++.+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL-GYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL-GYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE-SB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC-CcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 699999999 99999999999999889999999888776 3324899999884 5533221 12235667777
Q ss_pred hcccCCcEEEe
Q 015534 217 KWLVDDGIVLP 227 (405)
Q Consensus 217 ~~LkpgG~lip 227 (405)
++|+|||+++.
T Consensus 80 ~lL~~gG~i~i 90 (140)
T PF06962_consen 80 ELLKPGGIITI 90 (140)
T ss_dssp HHEEEEEEEEE
T ss_pred HhhccCCEEEE
Confidence 99999999874
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0011 Score=62.50 Aligned_cols=79 Identities=18% Similarity=0.220 Sum_probs=64.7
Q ss_pred ccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CCCCc
Q 015534 117 NKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTK 189 (405)
Q Consensus 117 ~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~ 189 (405)
.....++..++|.=+|.|..+..+++. +..+|+|+|.++ +++.|++.+... .+++++++++..++. .+..+
T Consensus 15 ~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~~~~~ 92 (305)
T TIGR00006 15 GLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDELLVTK 92 (305)
T ss_pred hcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhcCCCc
Confidence 344568889999999999999999984 447999999999 999999988754 368999999998764 13357
Q ss_pred eeEEEEcc
Q 015534 190 VDIIISEW 197 (405)
Q Consensus 190 ~D~Iv~~~ 197 (405)
+|.|+.++
T Consensus 93 vDgIl~DL 100 (305)
T TIGR00006 93 IDGILVDL 100 (305)
T ss_pred ccEEEEec
Confidence 99999864
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00073 Score=66.09 Aligned_cols=99 Identities=23% Similarity=0.238 Sum_probs=76.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHcCCCC-cEEEEEcccccccC-CCCceeEEEEc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKIEEIEL-PVTKVDIIISE 196 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~-~~~~~D~Iv~~ 196 (405)
.+.+|||.=+|+|.=++..+.. |..+|++-|+|+ .++.++++++.|++.+ ++++.+.|+..+-. ....||+|=.+
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 4568999999999888888774 678999999999 9999999999999987 79999999988742 34899999988
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
++| .+..+++.+.+.++.||.+..
T Consensus 129 PfG-------Sp~pfldsA~~~v~~gGll~v 152 (377)
T PF02005_consen 129 PFG-------SPAPFLDSALQAVKDGGLLCV 152 (377)
T ss_dssp -SS---------HHHHHHHHHHEEEEEEEEE
T ss_pred CCC-------CccHhHHHHHHHhhcCCEEEE
Confidence 763 455678888889999999874
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0018 Score=60.10 Aligned_cols=101 Identities=21% Similarity=0.179 Sum_probs=66.9
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEE---EEE---------------------
Q 015534 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVIT---VLK--------------------- 177 (405)
Q Consensus 123 ~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~---~~~--------------------- 177 (405)
..+||--|||.|.++..++..|. .+-|-|.|- |+-...=.+..-..++.++ |++
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 45899999999999999999987 777779998 7644333332111112222 111
Q ss_pred ---------------cccccccC---CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 178 ---------------GKIEEIEL---PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 178 ---------------~d~~~~~~---~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
||+.+.-- ..+.||+|+.. +++.....+-..++.+.++|||||+.|-
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTc---fFIDTa~NileYi~tI~~iLk~GGvWiN 294 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTC---FFIDTAHNILEYIDTIYKILKPGGVWIN 294 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEE---EEeechHHHHHHHHHHHHhccCCcEEEe
Confidence 22222211 12469999985 3455556777899999999999999873
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0014 Score=63.31 Aligned_cols=114 Identities=13% Similarity=0.109 Sum_probs=84.8
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHH--cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCcee
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAK--AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVD 191 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~--~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D 191 (405)
....+|.+|||..+-.|.=+..+|. .+-..|+|.|.+. -+...++++.+.|+. +..+...|..+++ ++ ++||
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~~~-~~fD 314 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKEFP-GSFD 314 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCcccccccccC-cccc
Confidence 3467899999999999977777766 3456899999999 999999999999985 4667778887664 44 4899
Q ss_pred EEEEcccccc--ccC-----------------hhhHHHHHHHHHhcccCCcEEEecCceeE
Q 015534 192 IIISEWMGYF--LLF-----------------ENMLNTVLYARDKWLVDDGIVLPDKASLY 233 (405)
Q Consensus 192 ~Iv~~~~~~~--l~~-----------------~~~~~~~l~~~~~~LkpgG~lip~~~~~~ 233 (405)
-|+....... +.. ......++.....++++||+++-+++++-
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 9997532222 111 11224667777799999999998776543
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0018 Score=55.68 Aligned_cols=97 Identities=23% Similarity=0.321 Sum_probs=63.3
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEc-cccccc--------CCC
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKG-KIEEIE--------LPV 187 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~--------~~~ 187 (405)
-+.++.+|||+||..|.++..+.+. +...|.|||+-. + ... ..++++.+ |+++-. +|.
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh--------~--~p~-~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH--------I--EPP-EGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee--------c--cCC-CCcccccccccCCHHHHHHHHHhCCC
Confidence 4578999999999999999999883 567899999854 1 111 22556665 665532 466
Q ss_pred CceeEEEEcccccc-----ccChhhHH---HHHHHHHhcccCCcEEE
Q 015534 188 TKVDIIISEWMGYF-----LLFENMLN---TVLYARDKWLVDDGIVL 226 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~-----l~~~~~~~---~~l~~~~~~LkpgG~li 226 (405)
.++|+|++++.... ..|...++ .++.-....++|+|.++
T Consensus 135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fv 181 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFV 181 (232)
T ss_pred CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEE
Confidence 89999999764321 11222221 22333346778999887
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0025 Score=57.88 Aligned_cols=84 Identities=14% Similarity=0.167 Sum_probs=59.3
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (405)
.+.+.+.+.. ...+..+|+|||||.=.+++..... +...++|+|++. +++.....+...+.+ .++...|...-+
T Consensus 92 Ld~fY~~if~--~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~ 167 (251)
T PF07091_consen 92 LDEFYDEIFG--RIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDP 167 (251)
T ss_dssp HHHHHHHHCC--CS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSH
T ss_pred HHHHHHHHHh--cCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccC
Confidence 3445555543 2445789999999999888887764 345999999999 999999999988865 666777776654
Q ss_pred CCCCceeEEEE
Q 015534 185 LPVTKVDIIIS 195 (405)
Q Consensus 185 ~~~~~~D~Iv~ 195 (405)
.+ ...|+.+.
T Consensus 168 ~~-~~~DlaLl 177 (251)
T PF07091_consen 168 PK-EPADLALL 177 (251)
T ss_dssp TT-SEESEEEE
T ss_pred CC-CCcchhhH
Confidence 43 78999986
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00097 Score=60.31 Aligned_cols=81 Identities=25% Similarity=0.216 Sum_probs=50.1
Q ss_pred cCCCCC--CEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHH---HHcCC-----CCcEEEEEccccccc-C
Q 015534 118 KFLFKD--KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIV---EANGF-----SNVITVLKGKIEEIE-L 185 (405)
Q Consensus 118 ~~~~~~--~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~---~~~~~-----~~~i~~~~~d~~~~~-~ 185 (405)
..+.++ .+|||.=+|-|.-++.++..|+ +|+++|-|| +..+.+.-+ ....- ..+|+++++|..++. .
T Consensus 69 ~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~ 147 (234)
T PF04445_consen 69 VGLKPGMRPSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQ 147 (234)
T ss_dssp TT-BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCC
T ss_pred hCCCCCCCCEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhh
Confidence 444454 4899999999999999999887 899999999 766555332 22221 147999999998853 3
Q ss_pred CCCceeEEEEcccc
Q 015534 186 PVTKVDIIISEWMG 199 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~ 199 (405)
+..+||+|+.++|.
T Consensus 148 ~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 148 PDNSFDVVYFDPMF 161 (234)
T ss_dssp HSS--SEEEE--S-
T ss_pred cCCCCCEEEECCCC
Confidence 45899999999874
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0001 Score=67.80 Aligned_cols=95 Identities=24% Similarity=0.292 Sum_probs=75.5
Q ss_pred CCCEEEEEcCCCcHHHH-HHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 122 KDKVVLDVGAGTGILSL-FCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~-~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
.+..|.|+=+|-|.+++ ++..+|++.|+|+|.+| .++..+..++.|+..+++.++.+|-....+. ...|-|...++
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~-~~AdrVnLGLl- 271 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPR-LRADRVNLGLL- 271 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCcc-ccchheeeccc-
Confidence 45789999999999999 88889999999999999 9999999999999888888888888776554 88999987443
Q ss_pred ccccChhhHHHHHHHHHhcccCCcE
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGI 224 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~ 224 (405)
...+..++... ++|||.|-
T Consensus 272 --PSse~~W~~A~----k~Lk~egg 290 (351)
T KOG1227|consen 272 --PSSEQGWPTAI----KALKPEGG 290 (351)
T ss_pred --cccccchHHHH----HHhhhcCC
Confidence 22344444433 56777443
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.014 Score=52.90 Aligned_cols=102 Identities=17% Similarity=0.203 Sum_probs=63.7
Q ss_pred HhccCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC--CCce
Q 015534 115 YQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--VTKV 190 (405)
Q Consensus 115 ~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~ 190 (405)
........|++||-||-+- ..++.++- ...++|+.+|+++ +++..++.+.+.|++ |+.++.|+.+-..+ .++|
T Consensus 37 ~~~~gdL~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~~f 113 (243)
T PF01861_consen 37 MAERGDLEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRGKF 113 (243)
T ss_dssp HHHTT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-B
T ss_pred HHhcCcccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhcCC
Confidence 3335557899999999766 55555555 4467999999999 999999999999986 99999999764222 3899
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCc
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDG 223 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG 223 (405)
|++++++. +- ...+.-++......||..|
T Consensus 114 D~f~TDPP-yT---~~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 114 DVFFTDPP-YT---PEGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp SEEEE----SS---HHHHHHHHHHHHHTB-STT
T ss_pred CEEEeCCC-CC---HHHHHHHHHHHHHHhCCCC
Confidence 99999885 22 2566778888888888666
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.003 Score=58.18 Aligned_cols=104 Identities=15% Similarity=0.120 Sum_probs=66.0
Q ss_pred CEEEEEcCCCc--HHHHHHHH--cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----------CC-
Q 015534 124 KVVLDVGAGTG--ILSLFCAK--AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----------LP- 186 (405)
Q Consensus 124 ~~VLDiGcG~G--~l~~~la~--~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~- 186 (405)
...||||||-= .....+|+ .+..+|+.||.+| .+..++..+..+.- .+..++.+|+.+.. +.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 57999999953 34455555 5667999999999 99999998877642 34899999997642 11
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+.++=+++... .+++..+..+..++..+...|.||..++.+.
T Consensus 149 ~rPVavll~~v-Lh~v~D~~dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 149 DRPVAVLLVAV-LHFVPDDDDPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp TS--EEEECT--GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred CCCeeeeeeee-eccCCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence 24555555544 4667676788999999999999999998654
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0047 Score=54.72 Aligned_cols=121 Identities=17% Similarity=0.265 Sum_probs=63.7
Q ss_pred hhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH----c-CCCeEEEEechH-HHHHHHHHHHHcCCCCcE
Q 015534 100 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK----A-GAAHVYAVECSQ-MANMAKQIVEANGFSNVI 173 (405)
Q Consensus 100 ~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~----~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i 173 (405)
+++.....-.|.+.|.+ .++..|+|+|.-.|.-+++.|. . +..+|+|||++. .... +..+..++.++|
T Consensus 14 i~q~P~Dm~~~qeli~~----~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI 87 (206)
T PF04989_consen 14 IIQYPQDMVAYQELIWE----LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRI 87 (206)
T ss_dssp ESS-HHHHHHHHHHHHH----H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTE
T ss_pred hhcCHHHHHHHHHHHHH----hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCce
Confidence 34444445556666654 3567999999999988777765 2 457999999964 3221 112334555789
Q ss_pred EEEEccccccc-------C-CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCc
Q 015534 174 TVLKGKIEEIE-------L-PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 174 ~~~~~d~~~~~-------~-~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
+++.||..+.. . ......+|+-+.- -.+ ..+-..+.....++++|+++|..+.
T Consensus 88 ~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~---H~~-~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 88 TFIQGDSIDPEIVDQVRELASPPHPVLVILDSS---HTH-EHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp EEEES-SSSTHHHHTSGSS----SSEEEEESS--------SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred EEEECCCCCHHHHHHHHHhhccCCceEEEECCC---ccH-HHHHHHHHHhCccCCCCCEEEEEec
Confidence 99999997653 1 1234556665421 112 3445666778899999999987653
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0022 Score=60.41 Aligned_cols=115 Identities=17% Similarity=0.061 Sum_probs=67.2
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH-cC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCC--
Q 015534 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELP-- 186 (405)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g-~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-- 186 (405)
.+.+.........++|||+|.|.|.-...+-. .+ .+.++.++.|+.+...-.-+..+-...+......|+..-.++
T Consensus 102 L~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp 181 (484)
T COG5459 102 LDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLP 181 (484)
T ss_pred HHHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCC
Confidence 34444445566778899999999876555544 33 457889999994433333344443333333444444333222
Q ss_pred -CCceeEEEEcccccccc---ChhhHHHHHHHHHhcccCCcEEEec
Q 015534 187 -VTKVDIIISEWMGYFLL---FENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 187 -~~~~D~Iv~~~~~~~l~---~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
...|++++. .+-+. .+..+...++.+..++.|||.++..
T Consensus 182 ~ad~ytl~i~---~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 182 AADLYTLAIV---LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIV 224 (484)
T ss_pred ccceeehhhh---hhhhccccCcchHHHHHHHHHHhccCCCeEEEE
Confidence 245666664 22222 2344556788888999999987743
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0015 Score=64.75 Aligned_cols=99 Identities=17% Similarity=0.169 Sum_probs=64.4
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCC--eEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccccc
Q 015534 124 KVVLDVGAGTGILSLFCAKAGAA--HVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (405)
Q Consensus 124 ~~VLDiGcG~G~l~~~la~~g~~--~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~ 201 (405)
..|+|..+|.|.++..|...+.- .|+-++-...+.. +-..|+ |-+.+.-.+.++.-+.+||+|.++.+...
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~v----IydRGL---IG~yhDWCE~fsTYPRTYDLlHA~~lfs~ 439 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPV----IYDRGL---IGVYHDWCEAFSTYPRTYDLLHADGLFSL 439 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEecccCCCCcchh----hhhccc---chhccchhhccCCCCcchhheehhhhhhh
Confidence 58999999999999999887531 2222211112222 222343 33344333445433589999999766554
Q ss_pred ccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 202 LLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
..+.-.+..++-++.|+|+|||.+|+.+
T Consensus 440 ~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 440 YKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred hcccccHHHHHHHhHhhcCCCceEEEec
Confidence 4444567889999999999999998754
|
; GO: 0008168 methyltransferase activity |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0046 Score=53.95 Aligned_cols=105 Identities=18% Similarity=0.179 Sum_probs=64.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcC-------CCCcEEEEEccccccc---CCCCc
Q 015534 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANG-------FSNVITVLKGKIEEIE---LPVTK 189 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~-------~~~~i~~~~~d~~~~~---~~~~~ 189 (405)
+.-.+.|||||.|.+.+.++. .+..-+.|+|+-. ..++.++++.+.+ + .++.+...+...+. +..++
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~-~ni~vlr~namk~lpn~f~kgq 138 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQY-PNISVLRTNAMKFLPNFFEKGQ 138 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcccccccc-ccceeeeccchhhccchhhhcc
Confidence 334689999999999999998 5677899999999 9999988887764 3 23566665554432 11122
Q ss_pred eeEEE-Eccccccc--cCh--hhHHHHHHHHHhcccCCcEEEe
Q 015534 190 VDIII-SEWMGYFL--LFE--NMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 190 ~D~Iv-~~~~~~~l--~~~--~~~~~~l~~~~~~LkpgG~lip 227 (405)
.+-.+ +-+=.++- .+. -.-..++....-+|++||.++.
T Consensus 139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yt 181 (249)
T KOG3115|consen 139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYT 181 (249)
T ss_pred cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEE
Confidence 11111 10000000 000 0113566677788999998873
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.013 Score=53.66 Aligned_cols=101 Identities=19% Similarity=0.232 Sum_probs=65.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHc-----CCCCcEEEEEccccccc---CCCCc-eeE
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEAN-----GFSNVITVLKGKIEEIE---LPVTK-VDI 192 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~-----~~~~~i~~~~~d~~~~~---~~~~~-~D~ 192 (405)
...+||++|+|+|..++.+|..+...|.-.|....+...+.+...+ ++...+.+...+..... +-.+. +|+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 4568999999999999999886666999999887444443333322 33334555544443322 11133 999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEE
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIV 225 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 225 (405)
|++.-+ ...+.....+...++.+|..+|.+
T Consensus 166 ilasDv---vy~~~~~e~Lv~tla~ll~~~~~i 195 (248)
T KOG2793|consen 166 ILASDV---VYEEESFEGLVKTLAFLLAKDGTI 195 (248)
T ss_pred EEEeee---eecCCcchhHHHHHHHHHhcCCeE
Confidence 998544 334456667777777888888843
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0087 Score=56.15 Aligned_cols=96 Identities=26% Similarity=0.245 Sum_probs=64.8
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcc--ccccc------CC
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK--IEEIE------LP 186 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d--~~~~~------~~ 186 (405)
.....|.+||-+|+|. |.++...|+ .|+++|+.+|+++ -++.|++ + |.. .+...... ..++. +.
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~-~~~~~~~~~~~~~~~~~v~~~~g 239 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GAT-VTDPSSHKSSPQELAELVEKALG 239 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCe-EEeeccccccHHHHHHHHHhhcc
Confidence 4567899999999998 888988888 7999999999999 9999998 3 321 12111111 11110 22
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
...+|+.+.-. ..+..++.....+++||.++.
T Consensus 240 ~~~~d~~~dCs---------G~~~~~~aai~a~r~gGt~vl 271 (354)
T KOG0024|consen 240 KKQPDVTFDCS---------GAEVTIRAAIKATRSGGTVVL 271 (354)
T ss_pred ccCCCeEEEcc---------CchHHHHHHHHHhccCCEEEE
Confidence 34588888521 223445555678899999764
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0025 Score=58.74 Aligned_cols=108 Identities=20% Similarity=0.281 Sum_probs=63.7
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHH-------HHHHH--HcCCCCcEEEEEcccccccC-C
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMA-------KQIVE--ANGFSNVITVLKGKIEEIEL-P 186 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a-------~~~~~--~~~~~~~i~~~~~d~~~~~~-~ 186 (405)
.-...+++|||+|||.|..++.+...|+..|...|.|. .++.- ...+. .+....-..+.+....+..+ .
T Consensus 112 ~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~ 191 (282)
T KOG2920|consen 112 QMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNH 191 (282)
T ss_pred heEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhh
Confidence 34567899999999999999999998888999999988 66211 11111 11111112333331111111 1
Q ss_pred CC--ceeEEEEccccccccChhhHHHH-HHHHHhcccCCcEEEec
Q 015534 187 VT--KVDIIISEWMGYFLLFENMLNTV-LYARDKWLVDDGIVLPD 228 (405)
Q Consensus 187 ~~--~~D~Iv~~~~~~~l~~~~~~~~~-l~~~~~~LkpgG~lip~ 228 (405)
.+ .||+|.+.-..+. +...+.+ ...+..+++++|+++..
T Consensus 192 t~~~~ydlIlsSetiy~---~~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 192 TERTHYDLILSSETIYS---IDSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred ccccchhhhhhhhhhhC---cchhhhhHhhhhhhcCCccchhhhh
Confidence 13 7888887443332 2344444 55666788899987643
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.023 Score=54.42 Aligned_cols=92 Identities=27% Similarity=0.259 Sum_probs=62.2
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcc-cccccCCCCceeEE
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK-IEEIELPVTKVDII 193 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~~D~I 193 (405)
....+|.+|+-+|+|- |.++..+|+ .| .+|+++|.++ -.+.|++.-. -.++... ......-.+.||+|
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGA-------d~~i~~~~~~~~~~~~~~~d~i 233 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGA-------DHVINSSDSDALEAVKEIADAI 233 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCC-------cEEEEcCCchhhHHhHhhCcEE
Confidence 4567899999999982 477888888 67 5999999999 8988887633 2334432 22221111349999
Q ss_pred EEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+... . +..+....+.|++||.++.
T Consensus 234 i~tv--------~--~~~~~~~l~~l~~~G~~v~ 257 (339)
T COG1064 234 IDTV--------G--PATLEPSLKALRRGGTLVL 257 (339)
T ss_pred EECC--------C--hhhHHHHHHHHhcCCEEEE
Confidence 9632 1 2334445588999999874
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.014 Score=55.80 Aligned_cols=98 Identities=21% Similarity=0.173 Sum_probs=78.0
Q ss_pred CCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC-CCceeEEEEcccc
Q 015534 123 DKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWMG 199 (405)
Q Consensus 123 ~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~ 199 (405)
..+|||.=+|+|+=++..+. .+..+|+.-|+|| .++.+++++..|.. ....+++.|+..+-.. ...||+|=.++++
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~IDiDPFG 131 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVIDIDPFG 131 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEecCCCC
Confidence 77999999999999998888 5555999999999 99999999999944 3467777888776432 3789999988764
Q ss_pred ccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.+.-++++..+.++.||.+...
T Consensus 132 -------SPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 132 -------SPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred -------CCchHHHHHHHHhhcCCEEEEE
Confidence 3345677777888889988754
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0091 Score=58.16 Aligned_cols=95 Identities=31% Similarity=0.331 Sum_probs=62.5
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcc-c-ccc-cCC-CCceeE
Q 015534 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK-I-EEI-ELP-VTKVDI 192 (405)
Q Consensus 120 ~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d-~-~~~-~~~-~~~~D~ 192 (405)
..++.+|+-+|||. |+++..+++ .|+.+|+++|.++ -++.|++..... .+.....+ . ... ... ...+|+
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~----~~~~~~~~~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD----VVVNPSEDDAGAEILELTGGRGADV 241 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe----EeecCccccHHHHHHHHhCCCCCCE
Confidence 34455999999998 888888888 7899999999999 999998754321 11111111 1 001 122 237999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
++-.. + .+..+..+.++++|||.++.
T Consensus 242 vie~~-G--------~~~~~~~ai~~~r~gG~v~~ 267 (350)
T COG1063 242 VIEAV-G--------SPPALDQALEALRPGGTVVV 267 (350)
T ss_pred EEECC-C--------CHHHHHHHHHHhcCCCEEEE
Confidence 98421 1 23355666689999999874
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.016 Score=50.40 Aligned_cols=111 Identities=16% Similarity=0.142 Sum_probs=72.1
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHH-cCC-CeEEEEechHHHH-------HHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAK-AGA-AHVYAVECSQMAN-------MAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~-~g~-~~V~~vD~s~~~~-------~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (405)
..++++.+|+|+=.|.|.++..++. .|. ..|++.=..+... ..+....+... .+++.+..+...+. +.+
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~-aN~e~~~~~~~A~~-~pq 121 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY-ANVEVIGKPLVALG-APQ 121 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh-hhhhhhCCcccccC-CCC
Confidence 5678999999999999999999998 343 3777765544111 11111111222 23666666666665 337
Q ss_pred ceeEEEEcccccc----ccChhhHHHHHHHHHhcccCCcEEEecCc
Q 015534 189 KVDIIISEWMGYF----LLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 189 ~~D~Iv~~~~~~~----l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
..|++......+. ..+......+..++.+.|||||+++..++
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 7788776432222 23455667888999999999999886554
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0068 Score=56.97 Aligned_cols=66 Identities=26% Similarity=0.340 Sum_probs=53.2
Q ss_pred EEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC--CCceeEEEEcc
Q 015534 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--VTKVDIIISEW 197 (405)
Q Consensus 125 ~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~D~Iv~~~ 197 (405)
+|+|+.||.|.++..+.++|...|.++|+++ .++..+.+... .++.+|+.++... ...+|+|+..+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhcCCCCCEEEeCC
Confidence 6999999999999999999998999999999 88887776531 2567788776532 25799999864
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.016 Score=51.97 Aligned_cols=105 Identities=20% Similarity=0.230 Sum_probs=67.4
Q ss_pred hccCCCCCCEEEEEcCCCcHHHHHHHH-cC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCc
Q 015534 116 QNKFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTK 189 (405)
Q Consensus 116 ~~~~~~~~~~VLDiGcG~G~l~~~la~-~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~ 189 (405)
.+.++.++.+||=||+++|......+. -| ..-|||||.|+ .=...-..+.+. .+|--+.-|+..-. ..-+-
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIiEDArhP~KYRmlVgm 226 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPIIEDARHPAKYRMLVGM 226 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeeeccCCCchheeeeeee
Confidence 346788999999999999988777777 33 45899999997 443333322222 23444555654321 11246
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+|+|+++.. .+.....+.-....+||+||-++.+
T Consensus 227 VDvIFaDva-----qpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 227 VDVIFADVA-----QPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred EEEEeccCC-----CchhhhhhhhhhhhhhccCCeEEEE
Confidence 888887542 2233344445667899999998854
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.019 Score=51.29 Aligned_cols=76 Identities=21% Similarity=0.271 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCCcHHHHHH--HHcCCCeEEEEechH-HHHHHHHHHHHc-CCCCcEEEEEcccccccCC-----CCceeE
Q 015534 122 KDKVVLDVGAGTGILSLFC--AKAGAAHVYAVECSQ-MANMAKQIVEAN-GFSNVITVLKGKIEEIELP-----VTKVDI 192 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~l--a~~g~~~V~~vD~s~-~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~~~-----~~~~D~ 192 (405)
++.++||||.|.-.+=-.+ .++|. +.+|.|+++ .++.|+.++..| ++...|+++...=.+-.++ .+.||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 4568999999986332222 22555 899999999 999999999999 7777777766443332222 589999
Q ss_pred EEEccc
Q 015534 193 IISEWM 198 (405)
Q Consensus 193 Iv~~~~ 198 (405)
..|++.
T Consensus 157 tlCNPP 162 (292)
T COG3129 157 TLCNPP 162 (292)
T ss_pred EecCCC
Confidence 999985
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0067 Score=53.95 Aligned_cols=92 Identities=23% Similarity=0.238 Sum_probs=63.3
Q ss_pred CEEEEEcCCCcHHHHHHHHcC--------C--CeEEEEechHHHHHHHHHHHHcCCCCcEEEEEccccccc--------C
Q 015534 124 KVVLDVGAGTGILSLFCAKAG--------A--AHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------L 185 (405)
Q Consensus 124 ~~VLDiGcG~G~l~~~la~~g--------~--~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~ 185 (405)
.+|+|+.+-.|.++..+++.- . +++++||+.+|+. + ..|.-+++|++... +
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----------I-~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----------I-EGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----------c-CceEEeecccCCHhHHHHHHHHh
Confidence 589999999999999998831 1 1499999987543 2 23777889987753 4
Q ss_pred CCCceeEEEEcccccc--ccC--h----hhHHHHHHHHHhcccCCcEEE
Q 015534 186 PVTKVDIIISEWMGYF--LLF--E----NMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~--l~~--~----~~~~~~l~~~~~~LkpgG~li 226 (405)
..++.|+|||+..... ++. | ..+-..+.-...+|||||.++
T Consensus 112 ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV 160 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV 160 (294)
T ss_pred CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee
Confidence 5579999999753321 211 1 112234444568999999987
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.032 Score=56.70 Aligned_cols=96 Identities=22% Similarity=0.274 Sum_probs=61.8
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc-----------cc-
Q 015534 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-----------IE- 184 (405)
Q Consensus 120 ~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-----------~~- 184 (405)
..++.+|+-+|||. |..++.+|+ .|+ .|+++|.++ -++.+++. |. +++..+..+ +.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aesl----GA----~~v~i~~~e~~~~~~gya~~~s~ 232 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESM----GA----EFLELDFEEEGGSGDGYAKVMSE 232 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CC----eEEEeccccccccccchhhhcch
Confidence 45789999999998 788888888 687 899999999 88887763 31 221111100 00
Q ss_pred ---------CC--CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 185 ---------LP--VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 185 ---------~~--~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+. ...+|+|+.... ......+..+.+...+.+||||+++.
T Consensus 233 ~~~~~~~~~~~~~~~gaDVVIetag---~pg~~aP~lit~~~v~~mkpGgvIVd 283 (509)
T PRK09424 233 EFIKAEMALFAEQAKEVDIIITTAL---IPGKPAPKLITAEMVASMKPGSVIVD 283 (509)
T ss_pred hHHHHHHHHHHhccCCCCEEEECCC---CCcccCcchHHHHHHHhcCCCCEEEE
Confidence 01 146999997321 11111222334777789999999874
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.03 Score=54.25 Aligned_cols=96 Identities=17% Similarity=0.244 Sum_probs=58.6
Q ss_pred CCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015534 119 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (405)
...++.+||-+|||. |.++..+++ .|+.+|+++|.++ -++.|++. |...-+.....+..++....+.+|+|+-
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~~~g~~D~vid 241 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----GADKLVNPQNDDLDHYKAEKGYFDVSFE 241 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----CCcEEecCCcccHHHHhccCCCCCEEEE
Confidence 345788999999875 667777777 6777899999999 88877653 3211111111122222111245899985
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.. + . +..+....++|++||+++.
T Consensus 242 ~~-G-------~-~~~~~~~~~~l~~~G~iv~ 264 (343)
T PRK09880 242 VS-G-------H-PSSINTCLEVTRAKGVMVQ 264 (343)
T ss_pred CC-C-------C-HHHHHHHHHHhhcCCEEEE
Confidence 21 1 1 1234455678899999874
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.14 Score=45.39 Aligned_cols=117 Identities=15% Similarity=0.170 Sum_probs=65.7
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH-cC--CCeEEEEechH-HHHHHHHHHHH-----------------
Q 015534 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AG--AAHVYAVECSQ-MANMAKQIVEA----------------- 166 (405)
Q Consensus 108 ~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g--~~~V~~vD~s~-~~~~a~~~~~~----------------- 166 (405)
+.+.+++.. .....+-++.|-.||.|.+.-.+.- ++ ...|+|.|+++ ++++|++|+.-
T Consensus 38 Ei~qR~l~~-l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~ 116 (246)
T PF11599_consen 38 EIFQRALHY-LEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELY 116 (246)
T ss_dssp HHHHHHHCT-SSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-hcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHH
Confidence 344444432 3334556899999999977655554 22 46899999999 99999998621
Q ss_pred ------------------------cCCCCcEEEEEcccccc------cCCCCceeEEEEccc-cccccC-----hhhHHH
Q 015534 167 ------------------------NGFSNVITVLKGKIEEI------ELPVTKVDIIISEWM-GYFLLF-----ENMLNT 210 (405)
Q Consensus 167 ------------------------~~~~~~i~~~~~d~~~~------~~~~~~~D~Iv~~~~-~~~l~~-----~~~~~~ 210 (405)
.|-.....+.+.|+++. ... ...|+|+.+.. +....+ ......
T Consensus 117 e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~-~~~diViTDlPYG~~t~W~g~~~~~p~~~ 195 (246)
T PF11599_consen 117 EQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAG-FTPDIVITDLPYGEMTSWQGEGSGGPVAQ 195 (246)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT----SEEEEE--CCCSSSTTS---HHHHHH
T ss_pred HHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccC-CCCCEEEecCCCcccccccCCCCCCcHHH
Confidence 11122367888888762 222 45799999642 121222 234678
Q ss_pred HHHHHHhcccCCcEEE
Q 015534 211 VLYARDKWLVDDGIVL 226 (405)
Q Consensus 211 ~l~~~~~~LkpgG~li 226 (405)
++..+..+|-+++++.
T Consensus 196 ml~~l~~vLp~~sVV~ 211 (246)
T PF11599_consen 196 MLNSLAPVLPERSVVA 211 (246)
T ss_dssp HHHHHHCCS-TT-EEE
T ss_pred HHHHHHhhCCCCcEEE
Confidence 9999999995444444
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.0065 Score=57.25 Aligned_cols=80 Identities=24% Similarity=0.228 Sum_probs=64.5
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHH-------HHHHHHHHcCCC-CcEEEEEcccccccCC-C
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MAN-------MAKQIVEANGFS-NVITVLKGKIEEIELP-V 187 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~-------~a~~~~~~~~~~-~~i~~~~~d~~~~~~~-~ 187 (405)
....+|+.|+|--.|||.+...+|+.|+ .|+|.|++- ++. -.+.++++.|.. .-+.++.+|...-+.. .
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn 282 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSN 282 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhc
Confidence 4568999999999999999999999988 999999999 776 346778888843 3356778888766543 4
Q ss_pred CceeEEEEccc
Q 015534 188 TKVDIIISEWM 198 (405)
Q Consensus 188 ~~~D~Iv~~~~ 198 (405)
..||.|||++.
T Consensus 283 ~~fDaIvcDPP 293 (421)
T KOG2671|consen 283 LKFDAIVCDPP 293 (421)
T ss_pred ceeeEEEeCCC
Confidence 68999999873
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.065 Score=50.02 Aligned_cols=81 Identities=17% Similarity=0.194 Sum_probs=66.2
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcC--CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----C
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L 185 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~ 185 (405)
+...+...++...+|.--|.|..+..+.+.. ..+++|+|.++ +++.|++.+...+ ++++++++.+.++. .
T Consensus 15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~ 92 (314)
T COG0275 15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKEL 92 (314)
T ss_pred HHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhc
Confidence 3344567788999999999999999999853 36799999999 9999999998766 78999999987764 2
Q ss_pred CCCceeEEEEc
Q 015534 186 PVTKVDIIISE 196 (405)
Q Consensus 186 ~~~~~D~Iv~~ 196 (405)
..+++|-|+.+
T Consensus 93 ~i~~vDGiL~D 103 (314)
T COG0275 93 GIGKVDGILLD 103 (314)
T ss_pred CCCceeEEEEe
Confidence 24688888875
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.031 Score=51.75 Aligned_cols=109 Identities=19% Similarity=0.132 Sum_probs=77.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcC--CC-CcEEEEEccccccc--CCCCceeEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANG--FS-NVITVLKGKIEEIE--LPVTKVDII 193 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~--~~-~~i~~~~~d~~~~~--~~~~~~D~I 193 (405)
...++||-||-|-|......+++. ...+.-+|+.. .++..++.+...- .. .++.++-||...+- .+.++||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 456799999999998887777743 56899999999 9999888876532 22 56888889876653 335899999
Q ss_pred EEccccccccChh-hHHHHHHHHHhcccCCcEEEecC
Q 015534 194 ISEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 194 v~~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+.+.-.-...... -...+...+.+.||+||+++...
T Consensus 200 i~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 200 ITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 9854221121111 23456677889999999988543
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.0043 Score=61.21 Aligned_cols=103 Identities=21% Similarity=0.209 Sum_probs=84.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH--cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----CCCceeEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAK--AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----PVTKVDII 193 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~--~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~D~I 193 (405)
.++.+|||.=|++|+-++..|+ -|..+|++-|.++ .++..+++++.|+..+.++..+.|+..+-. ....||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 4567999999999999998888 3678999999999 999999999999988888999988866532 24789999
Q ss_pred EEccccccccChhhHHHHHHHHHhcccCCcEEEecCc
Q 015534 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
=.+++| ....+++.+.+.++.||.++....
T Consensus 188 DLDPyG-------s~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 188 DLDPYG-------SPSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred ecCCCC-------CccHHHHHHHHHhhcCCEEEEEec
Confidence 987763 334677777888899999886543
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.089 Score=53.57 Aligned_cols=112 Identities=17% Similarity=0.045 Sum_probs=75.8
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHH-cC----CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AG----AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL- 185 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g----~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~- 185 (405)
.|.......+..+|+|-.||+|.+...+++ .+ ....+|.|+++ ....|+.++--+|+...+...++|...-+.
T Consensus 177 liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~ 256 (489)
T COG0286 177 LIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKH 256 (489)
T ss_pred HHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcc
Confidence 333334445667999999999988777666 22 25699999999 999999999988875335566665544331
Q ss_pred ----CCCceeEEEEccccccccC----------------------hhhHHHHHHHHHhcccCCcE
Q 015534 186 ----PVTKVDIIISEWMGYFLLF----------------------ENMLNTVLYARDKWLVDDGI 224 (405)
Q Consensus 186 ----~~~~~D~Iv~~~~~~~l~~----------------------~~~~~~~l~~~~~~LkpgG~ 224 (405)
..+.||.|++++......+ ...-..++..+...|+|||+
T Consensus 257 ~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~ 321 (489)
T COG0286 257 DDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGR 321 (489)
T ss_pred cccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCce
Confidence 2367999999874331100 01114677788889999774
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.022 Score=53.93 Aligned_cols=78 Identities=15% Similarity=0.167 Sum_probs=56.8
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----C-CCCc
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L-PVTK 189 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-~~~~ 189 (405)
....++..++|.=-|.|..+..+++ .+..+|+|+|.++ +++.|++++... .+++.++++++.++. . ...+
T Consensus 16 L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~~~~~ 93 (310)
T PF01795_consen 16 LNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELNGINK 93 (310)
T ss_dssp HT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTTTTS-
T ss_pred hCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHccCCCc
Confidence 3467888999999999999999998 4558999999999 999998877644 478999999998764 2 3368
Q ss_pred eeEEEEcc
Q 015534 190 VDIIISEW 197 (405)
Q Consensus 190 ~D~Iv~~~ 197 (405)
+|.|+.+.
T Consensus 94 ~dgiL~DL 101 (310)
T PF01795_consen 94 VDGILFDL 101 (310)
T ss_dssp EEEEEEE-
T ss_pred cCEEEEcc
Confidence 99999853
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.081 Score=52.22 Aligned_cols=106 Identities=22% Similarity=0.154 Sum_probs=65.0
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcc-ccc-c-c-CCCCce
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK-IEE-I-E-LPVTKV 190 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d-~~~-~-~-~~~~~~ 190 (405)
....++.+||.+|||. |.++..+++ .|..+|+++|.++ ..+.+++.. +. ..+.....+ ... + . .....+
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~~~~~ 255 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELTGGRGP 255 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHcCCCCC
Confidence 4456788999999988 888888888 6666799999999 988887652 11 112211111 111 1 1 122469
Q ss_pred eEEEEcccccc------------ccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 191 DIIISEWMGYF------------LLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 191 D~Iv~~~~~~~------------l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+|+...-+.. +....+....+....+.|+++|.++.
T Consensus 256 D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~ 304 (386)
T cd08283 256 DVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSI 304 (386)
T ss_pred CEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEE
Confidence 99986321100 01111224456777789999999874
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.053 Score=51.93 Aligned_cols=121 Identities=17% Similarity=0.033 Sum_probs=77.8
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCC-----CeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-------
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGA-----AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------- 184 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~-----~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------- 184 (405)
+.+.++.+|||+.+-.|.=+..+.+... ..|+|-|.++ -+......+....- .++.+...|+...+
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceeccccccccC
Confidence 5678999999999999988877777432 2799999998 77766666644332 33555555554332
Q ss_pred --CCCCceeEEEEccccc--ccc-Ch-----------------hhHHHHHHHHHhcccCCcEEEecCceeEEEEccccc
Q 015534 185 --LPVTKVDIIISEWMGY--FLL-FE-----------------NMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAE 241 (405)
Q Consensus 185 --~~~~~~D~Iv~~~~~~--~l~-~~-----------------~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~ 241 (405)
.....||-|+++.... ..+ .. ...-.++....++||+||.++-++++ +.|++.+.
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS--LnpieNEa 306 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS--LNPIENEA 306 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC--CCchhhHH
Confidence 1235799999853211 110 00 01125667777999999999987765 34555443
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.05 Score=42.68 Aligned_cols=33 Identities=21% Similarity=0.439 Sum_probs=27.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ 155 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~ 155 (405)
+.....|||||+|.+...|.+.|. .-+|+|.-.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Ccccccccc
Confidence 455799999999999999999887 778888743
|
; GO: 0008168 methyltransferase activity |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.22 Score=43.54 Aligned_cols=97 Identities=24% Similarity=0.293 Sum_probs=62.2
Q ss_pred EEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHH-------cC-C--------CCcEEEEEcccccccC
Q 015534 125 VVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-------NG-F--------SNVITVLKGKIEEIEL 185 (405)
Q Consensus 125 ~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~-------~~-~--------~~~i~~~~~d~~~~~~ 185 (405)
+|.-||+|+ | .++..++..|. .|+.+|.++ .++.+++.+.. .+ + -.+++ ...|+.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~-- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA-- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH--
Confidence 477899988 3 56777777876 999999999 99888777654 11 1 12454 33455544
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCce
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
...|+|+=.. ....+.-..++..+.+.+.|+.+|.-++.+
T Consensus 77 --~~adlViEai----~E~l~~K~~~~~~l~~~~~~~~ilasnTSs 116 (180)
T PF02737_consen 77 --VDADLVIEAI----PEDLELKQELFAELDEICPPDTILASNTSS 116 (180)
T ss_dssp --CTESEEEE-S-----SSHHHHHHHHHHHHCCS-TTSEEEE--SS
T ss_pred --hhhheehhhc----cccHHHHHHHHHHHHHHhCCCceEEecCCC
Confidence 3689998532 223345578999999999999887755443
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.56 Score=43.64 Aligned_cols=124 Identities=13% Similarity=0.108 Sum_probs=82.0
Q ss_pred HhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCC--CCcEEEEEccccc
Q 015534 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGF--SNVITVLKGKIEE 182 (405)
Q Consensus 105 ~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~--~~~i~~~~~d~~~ 182 (405)
.|+..+-+.+.+.... ....|+.+|||-=.-...+......+++=+|..++++.-++.+...+. +.+.+++..|+.+
T Consensus 65 ~Rtr~~D~~i~~~~~~-g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 143 (260)
T TIGR00027 65 VRTRFFDDFLLAAVAA-GIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQ 143 (260)
T ss_pred HHHHHHHHHHHHHHhc-CCcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchh
Confidence 4555555555544332 234799999998766655533212467777776677777777776542 3668899999862
Q ss_pred cc--------CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCc
Q 015534 183 IE--------LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 183 ~~--------~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
.. +.....-+++++.+..++ .+.....++..+.+...||+.+++...
T Consensus 144 ~w~~~L~~~gfd~~~ptl~i~EGvl~YL-~~~~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 144 DWPAALAAAGFDPTAPTAWLWEGLLMYL-TEEAVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred hHHHHHHhCCCCCCCCeeeeecchhhcC-CHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 11 222456688888877666 456778899999888889999887643
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.25 Score=48.97 Aligned_cols=87 Identities=23% Similarity=0.265 Sum_probs=56.1
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 120 ~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
..+|++|+-+|+|. |.....+++ .|+ +|+.+|.++ -+..|+. .|. +.+ +..+. . ..+|+|+..
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e~-v--~~aDVVI~a 264 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM----EGY----EVM--TMEEA-V--KEGDIFVTT 264 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh----cCC----EEc--cHHHH-H--cCCCEEEEC
Confidence 36899999999998 666665666 677 899999999 7766654 342 222 12222 1 457999863
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
. +....+-....+.+|+||+++..
T Consensus 265 t--------G~~~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 265 T--------GNKDIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred C--------CCHHHHHHHHHhcCCCCcEEEEe
Confidence 2 12222233446889999998743
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.11 Score=52.68 Aligned_cols=94 Identities=20% Similarity=0.263 Sum_probs=59.3
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc---------------
Q 015534 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE--------------- 182 (405)
Q Consensus 121 ~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~--------------- 182 (405)
.++.+||-+|+|. |..+..+++ .|+ .|+++|.++ .++.+++. |. +++.-+..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~l----Ga----~~v~v~~~e~g~~~~gYa~~~s~~ 232 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSM----GA----EFLELDFKEEGGSGDGYAKVMSEE 232 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CC----eEEeccccccccccccceeecCHH
Confidence 4668999999998 677777777 676 799999999 77776652 31 222222211
Q ss_pred --------ccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 183 --------IELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 183 --------~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
+.-....+|+|+...+ ..+.+.+.-+.++..+.+|||++++
T Consensus 233 ~~~~~~~~~~e~~~~~DIVI~Tal---ipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 233 FIAAEMELFAAQAKEVDIIITTAL---IPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcc---cCCCCCCeeehHHHHhhCCCCCEEE
Confidence 1101256999987542 1122222234556678899999877
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.14 Score=48.40 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=41.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHH
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA 166 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~ 166 (405)
..+|..|||--||+|..+..+.+.|- +.+|+|+++ .++.|++++..
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 47899999999999999998888855 999999999 99999999864
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.067 Score=51.24 Aligned_cols=64 Identities=36% Similarity=0.437 Sum_probs=52.2
Q ss_pred EEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCceeEEEEcc
Q 015534 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISEW 197 (405)
Q Consensus 125 ~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~Iv~~~ 197 (405)
+++|+-||.|.+++-+.++|...|.++|+++ .++.-+.++. ....+|+.++. ++. .+|+++..+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~-~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPK-DVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHH-T-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccc-cceEEEecc
Confidence 6999999999999999999988999999999 8888777764 67889998876 332 699999853
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.24 Score=47.99 Aligned_cols=90 Identities=12% Similarity=0.079 Sum_probs=55.7
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH--cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015534 120 LFKDKVVLDVGAGT-GILSLFCAK--AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (405)
Q Consensus 120 ~~~~~~VLDiGcG~-G~l~~~la~--~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (405)
..++.+||-+|||. |.++..+++ .|+.+|+++|.++ -++.|++ .+. ...+ .++. ....+|+|+-
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~----~~~~-~~~g~d~viD 228 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLI----DDIP-EDLAVDHAFE 228 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeeh----hhhh-hccCCcEEEE
Confidence 46789999999876 556656555 3667899999999 8887764 121 1111 1111 1124899884
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
. .+ . ...+..+....++|++||+++.
T Consensus 229 ~-~G----~-~~~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 229 C-VG----G-RGSQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred C-CC----C-CccHHHHHHHHHhCcCCcEEEE
Confidence 2 11 1 1123445556689999999874
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.5 Score=43.47 Aligned_cols=124 Identities=14% Similarity=0.161 Sum_probs=72.0
Q ss_pred HHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH----cC--CCeEEEEechH----------------------
Q 015534 104 VVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK----AG--AAHVYAVECSQ---------------------- 155 (405)
Q Consensus 104 ~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~----~g--~~~V~~vD~s~---------------------- 155 (405)
..|...+..++.......-+.-|+|+||-.|..++.++. .+ ..++++.|.=+
T Consensus 56 ~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~ 135 (248)
T PF05711_consen 56 RERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYN 135 (248)
T ss_dssp HHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCC
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcc
Confidence 456667777777665444456799999999987765543 22 35788877421
Q ss_pred -----HHHHHHHHHHHcCC-CCcEEEEEcccccccC--CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 156 -----MANMAKQIVEANGF-SNVITVLKGKIEEIEL--PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 156 -----~~~~a~~~~~~~~~-~~~i~~~~~d~~~~~~--~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.++..++++...++ .++++++.|.+.+... +.+++-++..+. =.+ ......+..+...|.|||+||+
T Consensus 136 ~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~----DlY-esT~~aLe~lyprl~~GGiIi~ 210 (248)
T PF05711_consen 136 GYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDC----DLY-ESTKDALEFLYPRLSPGGIIIF 210 (248)
T ss_dssp HHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE-------SH-HHHHHHHHHHGGGEEEEEEEEE
T ss_pred cccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEec----cch-HHHHHHHHHHHhhcCCCeEEEE
Confidence 23333444444453 3679999999976532 234444444321 112 2345778888899999999998
Q ss_pred cCcee
Q 015534 228 DKASL 232 (405)
Q Consensus 228 ~~~~~ 232 (405)
.++..
T Consensus 211 DDY~~ 215 (248)
T PF05711_consen 211 DDYGH 215 (248)
T ss_dssp SSTTT
T ss_pred eCCCC
Confidence 87543
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.51 Score=45.58 Aligned_cols=108 Identities=18% Similarity=0.162 Sum_probs=57.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc------------C-----CCeEEEEechH--HHHHHHHHHHH-----cCCCCcEEE
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKA------------G-----AAHVYAVECSQ--MANMAKQIVEA-----NGFSNVITV 175 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~------------g-----~~~V~~vD~s~--~~~~a~~~~~~-----~~~~~~i~~ 175 (405)
....-+|+|+||.+|..++.+... + .-.|+--|.-. .-...+..... ..-+--+..
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 344569999999999888776542 1 02677777533 22222221111 011111334
Q ss_pred EEcccccccCCCCceeEEEEccccccccC------------------------------------hhhHHHHHHHHHhcc
Q 015534 176 LKGKIEEIELPVTKVDIIISEWMGYFLLF------------------------------------ENMLNTVLYARDKWL 219 (405)
Q Consensus 176 ~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~------------------------------------~~~~~~~l~~~~~~L 219 (405)
+.+.+-.-.+|.++.|++++....++|.. ..++..+++.+++-|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 55666655678899999998533332211 123457788888999
Q ss_pred cCCcEEEe
Q 015534 220 VDDGIVLP 227 (405)
Q Consensus 220 kpgG~lip 227 (405)
+|||+++.
T Consensus 174 v~GG~mvl 181 (334)
T PF03492_consen 174 VPGGRMVL 181 (334)
T ss_dssp EEEEEEEE
T ss_pred ccCcEEEE
Confidence 99999884
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.18 Score=45.98 Aligned_cols=89 Identities=22% Similarity=0.260 Sum_probs=66.6
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
.+.+|....|+|+-.|.++..+.+.+- .|++||.-+|....- .. ..|+-...|-..+.......|-.||+++
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL~----dt---g~v~h~r~DGfk~~P~r~~idWmVCDmV 279 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSLM----DT---GQVTHLREDGFKFRPTRSNIDWMVCDMV 279 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhhh----cc---cceeeeeccCcccccCCCCCceEEeehh
Confidence 457889999999999999999999866 999999988543322 22 3488888888777654578999999876
Q ss_pred cccccChhhHHHHHHHHHhcccCC
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDD 222 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~Lkpg 222 (405)
+.+..+-..+..+|..|
T Consensus 280 -------EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 280 -------EKPARVAALIAKWLVNG 296 (358)
T ss_pred -------cCcHHHHHHHHHHHHcc
Confidence 34455555566666554
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.24 Score=45.04 Aligned_cols=47 Identities=21% Similarity=0.260 Sum_probs=41.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN 167 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~ 167 (405)
..+|..|||--||+|..+..+.+.|- +.+|+|+++ ..+.|.+++...
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence 35888999999999999998888865 899999999 999999888654
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.14 Score=46.10 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=34.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHH
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQ 162 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~ 162 (405)
..+|..|||.-||+|..+..+.+.|- +.+|+|+++ .+++|++
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 46789999999999999999988865 899999999 9998874
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.035 Score=53.88 Aligned_cols=63 Identities=27% Similarity=0.333 Sum_probs=56.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCc-EEEEEcccccc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNV-ITVLKGKIEEI 183 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~-i~~~~~d~~~~ 183 (405)
..+|..|-|+-||.|.+++.+++.| ++|++-|.++ ++++.+.++..|.+... |+++..|+.++
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 4688899999999999999999987 5999999999 99999999999988765 89998888665
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.39 Score=47.01 Aligned_cols=94 Identities=22% Similarity=0.223 Sum_probs=57.8
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc----cc-CCCCc
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE----IE-LPVTK 189 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~----~~-~~~~~ 189 (405)
....++.+||-.|+|. |.++..+++ .|+.+|+++|.++ -.+.+++ .|.. .++..+-.+ +. ...+.
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~i~~~~~~g 259 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGAT---ATVNAGDPNAVEQVRELTGGG 259 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCc---eEeCCCchhHHHHHHHHhCCC
Confidence 4567888999999865 566666777 6777899999999 8877764 2331 222211111 11 11236
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|+|+-.. + . ...+....+.|+++|.++.
T Consensus 260 ~d~vid~~-G----~----~~~~~~~~~~l~~~G~iv~ 288 (371)
T cd08281 260 VDYAFEMA-G----S----VPALETAYEITRRGGTTVT 288 (371)
T ss_pred CCEEEECC-C----C----hHHHHHHHHHHhcCCEEEE
Confidence 89998521 1 1 1234444578899999874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.34 Score=44.81 Aligned_cols=70 Identities=21% Similarity=0.256 Sum_probs=46.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHc-C--------CCeEEEEechH-HHHHHHHHHHHc-----CCCCcEEEEEcccccccCCC
Q 015534 123 DKVVLDVGAGTGILSLFCAKA-G--------AAHVYAVECSQ-MANMAKQIVEAN-----GFSNVITVLKGKIEEIELPV 187 (405)
Q Consensus 123 ~~~VLDiGcG~G~l~~~la~~-g--------~~~V~~vD~s~-~~~~a~~~~~~~-----~~~~~i~~~~~d~~~~~~~~ 187 (405)
..+|+|+|+|+|.++.-+++. . ..+++.||+|+ +.+..++.+... ....+|.+ ..++.+.+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence 469999999999999888872 1 24899999999 988888877652 23445776 33444332
Q ss_pred CceeEEEEcc
Q 015534 188 TKVDIIISEW 197 (405)
Q Consensus 188 ~~~D~Iv~~~ 197 (405)
..-+|+++-
T Consensus 95 -~~~~iiaNE 103 (252)
T PF02636_consen 95 -FPGFIIANE 103 (252)
T ss_dssp -CCEEEEEES
T ss_pred -CCEEEEEee
Confidence 455666643
|
; PDB: 4F3N_A 1ZKD_B. |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.21 Score=47.63 Aligned_cols=84 Identities=25% Similarity=0.169 Sum_probs=53.8
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 121 ~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
.++.+||-+|||. |.++..+++ .|+..|+++|.++ .++.|.+. . ++ |..+. ....+|+|+-..
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~--~~~g~Dvvid~~ 208 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------VL--DPEKD--PRRDYRAIYDAS 208 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------cc--Chhhc--cCCCCCEEEECC
Confidence 3577899999876 677777777 6887788899888 76666532 1 11 11110 124689988521
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+ . +..+....++|+++|+++.
T Consensus 209 -G----~----~~~~~~~~~~l~~~G~iv~ 229 (308)
T TIGR01202 209 -G----D----PSLIDTLVRRLAKGGEIVL 229 (308)
T ss_pred -C----C----HHHHHHHHHhhhcCcEEEE
Confidence 1 1 2234555678999999874
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.29 Score=52.01 Aligned_cols=105 Identities=14% Similarity=0.089 Sum_probs=64.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH-c-------C-----CCeEEEEechH-HHHHHH--------------HHHHH-----c
Q 015534 121 FKDKVVLDVGAGTGILSLFCAK-A-------G-----AAHVYAVECSQ-MANMAK--------------QIVEA-----N 167 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~-~-------g-----~~~V~~vD~s~-~~~~a~--------------~~~~~-----~ 167 (405)
.+.-+|||+|-|+|...+.+.+ . . .-+++++|..| ..+... +.... .
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 3446999999999976555543 1 1 23899999754 322222 22211 1
Q ss_pred CC------CC--cEEEEEcccccccCC-CCceeEEEEccccccccChhh-HHHHHHHHHhcccCCcEEE
Q 015534 168 GF------SN--VITVLKGKIEEIELP-VTKVDIIISEWMGYFLLFENM-LNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 168 ~~------~~--~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~~~l~~~~~-~~~~l~~~~~~LkpgG~li 226 (405)
|+ .+ .+++..+|+.+.... ...+|+++.+.+.-.- ++.+ -..++..+.++++|||.+.
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~-np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAK-NPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCcc-ChhhccHHHHHHHHHHhCCCCEEE
Confidence 21 01 345677887664311 2579999987653322 2233 2688999999999999987
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.52 Score=45.84 Aligned_cols=94 Identities=20% Similarity=0.170 Sum_probs=58.0
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEc---cccc-cc--CCCC
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG---KIEE-IE--LPVT 188 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~---d~~~-~~--~~~~ 188 (405)
....++.+||-.|+|. |.++..+|+ .|+.+|+++|.++ -.+.+++ .|.. .++.. +..+ +. ....
T Consensus 172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~---~~i~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGAT---HTVNSSGTDPVEAIRALTGGF 244 (358)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---eEEcCCCcCHHHHHHHHhCCC
Confidence 4567889999999865 666777777 6776799999999 8877754 2321 22221 1111 10 1224
Q ss_pred ceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.+|+|+-. .+ .. ..+....+.|++||+++.
T Consensus 245 g~d~vid~-~g----~~----~~~~~~~~~~~~~G~iv~ 274 (358)
T TIGR03451 245 GADVVIDA-VG----RP----ETYKQAFYARDLAGTVVL 274 (358)
T ss_pred CCCEEEEC-CC----CH----HHHHHHHHHhccCCEEEE
Confidence 68999842 11 11 233444578899999874
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.55 Score=46.00 Aligned_cols=105 Identities=14% Similarity=0.223 Sum_probs=58.8
Q ss_pred CCEEEEEcCCCcHHHHHHHHc------------C----CCeEEEEechH--HHHHHHHHHH--H-----------cCCCC
Q 015534 123 DKVVLDVGAGTGILSLFCAKA------------G----AAHVYAVECSQ--MANMAKQIVE--A-----------NGFSN 171 (405)
Q Consensus 123 ~~~VLDiGcG~G~l~~~la~~------------g----~~~V~~vD~s~--~~~~a~~~~~--~-----------~~~~~ 171 (405)
..+|+|+|||+|..++.+... + --+|+.-|... .-...+.... . .+-..
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 568999999999877665331 1 13566555532 2222222111 0 01000
Q ss_pred -cEEEEEcccccccCCCCceeEEEEccccccccC-----------------------------------hhhHHHHHHHH
Q 015534 172 -VITVLKGKIEEIELPVTKVDIIISEWMGYFLLF-----------------------------------ENMLNTVLYAR 215 (405)
Q Consensus 172 -~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~-----------------------------------~~~~~~~l~~~ 215 (405)
-+..+.+..-.-.+|.++.+++++....+++.. ..++..+++.+
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 022233444444477889999998543333321 11345778888
Q ss_pred HhcccCCcEEEe
Q 015534 216 DKWLVDDGIVLP 227 (405)
Q Consensus 216 ~~~LkpgG~lip 227 (405)
++-|.|||+++.
T Consensus 224 a~ELvpGG~mvl 235 (386)
T PLN02668 224 AQEMKRGGAMFL 235 (386)
T ss_pred HHHhccCcEEEE
Confidence 899999999884
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.3 Score=45.82 Aligned_cols=95 Identities=18% Similarity=0.178 Sum_probs=68.0
Q ss_pred CCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 123 DKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 123 ~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
+.+|.-||.|. |..+..+|- .|+ .|+.+|.|. -+......+. .+++.+......+...-.++|++|...+
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v~~aDlvIgaVL- 240 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAVKKADLVIGAVL- 240 (371)
T ss_pred CccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHhhhccEEEEEEE-
Confidence 35788888886 555555555 445 999999998 7766665543 4688888877777654578999997433
Q ss_pred ccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
+.....+.-+.+++.+.+|||++++
T Consensus 241 --IpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 241 --IPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred --ecCCCCceehhHHHHHhcCCCcEEE
Confidence 3344555556777789999999987
|
|
| >KOG2912 consensus Predicted DNA methylase [Function unknown] | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.33 Score=45.60 Aligned_cols=72 Identities=24% Similarity=0.230 Sum_probs=52.6
Q ss_pred EEEEcCCCcHHHHHH--HHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-------CCCceeEEEE
Q 015534 126 VLDVGAGTGILSLFC--AKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-------PVTKVDIIIS 195 (405)
Q Consensus 126 VLDiGcG~G~l~~~l--a~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-------~~~~~D~Iv~ 195 (405)
=+|||.|...+--.+ .+.+ -...++|+.+ .+..|++++.++++++.+.+++.......+ ++..||.+.|
T Consensus 106 GiDIgtgasci~~llg~rq~n-~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMc 184 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNN-WYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMC 184 (419)
T ss_pred eeeccCchhhhHHhhhchhcc-ceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEec
Confidence 479998886442222 2233 4789999999 999999999999999999988875433221 2356999999
Q ss_pred ccc
Q 015534 196 EWM 198 (405)
Q Consensus 196 ~~~ 198 (405)
++.
T Consensus 185 NPP 187 (419)
T KOG2912|consen 185 NPP 187 (419)
T ss_pred CCc
Confidence 874
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.32 Score=45.57 Aligned_cols=92 Identities=27% Similarity=0.258 Sum_probs=55.8
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEE-ccc-cccc--CCCCceeE
Q 015534 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK-GKI-EEIE--LPVTKVDI 192 (405)
Q Consensus 120 ~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~-~d~-~~~~--~~~~~~D~ 192 (405)
..++.+||-+|+|. |.++..+|+ .|+.+|+++|.++ -.+.|++. |.. .++. .+. ..+. .....+|+
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~---~~i~~~~~~~~~~~~~~~~g~d~ 190 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GAT---ALAEPEVLAERQGGLQNGRGVDV 190 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCc---EecCchhhHHHHHHHhCCCCCCE
Confidence 35788999999875 566666777 6776799999988 77776653 321 1111 111 1110 12246899
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+-.. + . ...+....+.|+|+|+++.
T Consensus 191 vid~~-G-------~-~~~~~~~~~~l~~~G~iv~ 216 (280)
T TIGR03366 191 ALEFS-G-------A-TAAVRACLESLDVGGTAVL 216 (280)
T ss_pred EEECC-C-------C-hHHHHHHHHHhcCCCEEEE
Confidence 88521 1 1 2234445678899999874
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.5 Score=43.59 Aligned_cols=97 Identities=20% Similarity=0.235 Sum_probs=70.4
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC---CCceeEE
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDII 193 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~I 193 (405)
....|+.|+-+| ---+.++.++-.| +++|..+|+++ .+....+.++..|+ ++++.+.-|+.+- +| .++||++
T Consensus 149 GDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~p-lpe~~~~kFDvf 225 (354)
T COG1568 149 GDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRNP-LPEDLKRKFDVF 225 (354)
T ss_pred cCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhccc-ChHHHHhhCCee
Confidence 345678899999 4446677776644 78999999999 99999999999998 4588888888764 22 3789999
Q ss_pred EEccccccccChhhHHHHHHHHHhcccCC
Q 015534 194 ISEWMGYFLLFENMLNTVLYARDKWLVDD 222 (405)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~Lkpg 222 (405)
+.++.-. ...+..++..-...||.-
T Consensus 226 iTDPpeT----i~alk~FlgRGI~tLkg~ 250 (354)
T COG1568 226 ITDPPET----IKALKLFLGRGIATLKGE 250 (354)
T ss_pred ecCchhh----HHHHHHHHhccHHHhcCC
Confidence 9876422 134455555444555544
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.47 Score=45.93 Aligned_cols=111 Identities=20% Similarity=0.171 Sum_probs=73.3
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHH-------HcCC-CCcEEEEEcccccc
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVE-------ANGF-SNVITVLKGKIEEI 183 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~-------~~~~-~~~i~~~~~d~~~~ 183 (405)
+.+.....++....|+|.|.|.+..+++. ++.+.=+|+++.+ ..+.|..+.. -.|- ++.++.++++..+-
T Consensus 184 i~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~ 263 (419)
T KOG3924|consen 184 IVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDP 263 (419)
T ss_pred HHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCH
Confidence 33345678889999999999999888888 5677888998876 5554433322 2232 35688888887654
Q ss_pred cC---CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 184 EL---PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 184 ~~---~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.. -....++|+++-+ .+.++..-.+ ..+..-+++|-++|-.
T Consensus 264 ~~v~eI~~eatvi~vNN~---~Fdp~L~lr~-~eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 264 KRVTEIQTEATVIFVNNV---AFDPELKLRS-KEILQKCKDGTRIISS 307 (419)
T ss_pred HHHHHHhhcceEEEEecc---cCCHHHHHhh-HHHHhhCCCcceEecc
Confidence 31 1367899998654 4343333233 3666777899988843
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.45 Score=43.60 Aligned_cols=96 Identities=28% Similarity=0.310 Sum_probs=56.9
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc-c-cCCCCceeE
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I-ELPVTKVDI 192 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~D~ 192 (405)
....++.+||..|+|+ |.....+++ .| .+|++++.++ ..+.+++. +....+.....+... + ....+.+|+
T Consensus 130 ~~~~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 130 GVLKPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKEL----GADHVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHh----CCceeccCCcCCHHHHHHHhcCCCCCE
Confidence 3346788999999996 666666777 55 5999999998 77776543 211101111111100 0 112367999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
++...- .. ..+....+.|+++|.++.
T Consensus 205 vi~~~~-----~~----~~~~~~~~~l~~~G~~v~ 230 (271)
T cd05188 205 VIDAVG-----GP----ETLAQALRLLRPGGRIVV 230 (271)
T ss_pred EEECCC-----CH----HHHHHHHHhcccCCEEEE
Confidence 986321 10 234455678899999873
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.31 Score=46.90 Aligned_cols=97 Identities=26% Similarity=0.231 Sum_probs=56.5
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeE
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDI 192 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~ 192 (405)
....++.+||-+|+|. |.++..+++ .|+++|++++.++ -.+.+++. |....+.....+...+. .....+|+
T Consensus 159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~~~d~ 234 (339)
T cd08239 159 VGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GADFVINSGQDDVQEIRELTSGAGADV 234 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEEcCCcchHHHHHHHhCCCCCCE
Confidence 3456789999998864 556666666 6776699999998 77777543 32111111111111111 12247999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+-.. + . ...+....+.|+++|.++.
T Consensus 235 vid~~-g----~----~~~~~~~~~~l~~~G~~v~ 260 (339)
T cd08239 235 AIECS-G----N----TAARRLALEAVRPWGRLVL 260 (339)
T ss_pred EEECC-C----C----HHHHHHHHHHhhcCCEEEE
Confidence 98521 1 1 1233444578899999873
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.2 Score=48.00 Aligned_cols=65 Identities=26% Similarity=0.352 Sum_probs=50.5
Q ss_pred EEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC-CCceeEEEEcc
Q 015534 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEW 197 (405)
Q Consensus 126 VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~ 197 (405)
|+|+-||.|.++.-+.++|...|.++|+++ .++.-+.++. + .++.+|+.++... ...+|+++..+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~~~~~dvl~gg~ 67 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSDIPDFDILLGGF 67 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhhCCCcCEEEecC
Confidence 689999999999999999987888999999 8887776642 2 4456788777531 24689999753
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=91.94 E-value=1 Score=43.22 Aligned_cols=90 Identities=23% Similarity=0.312 Sum_probs=55.6
Q ss_pred CCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcc---cccccCCCCceeEEEE
Q 015534 122 KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK---IEEIELPVTKVDIIIS 195 (405)
Q Consensus 122 ~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~~~~~D~Iv~ 195 (405)
++.+||..|||. |..+..+++ .|..+|++++.++ ..+.+++. +.. .++..+ ...+....+.+|+++.
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~~~~vd~vld 237 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GAD---ETVNLARDPLAAYAADKGDFDVVFE 237 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCC---EEEcCCchhhhhhhccCCCccEEEE
Confidence 788999998875 666666776 6666899999988 77766542 321 222211 1122112245999986
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.. + . ...+....+.|+++|+++-
T Consensus 238 ~~-g----~----~~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 238 AS-G----A----PAALASALRVVRPGGTVVQ 260 (339)
T ss_pred CC-C----C----HHHHHHHHHHHhcCCEEEE
Confidence 32 1 1 1234555688899999873
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=91.79 E-value=1.1 Score=43.98 Aligned_cols=45 Identities=20% Similarity=0.229 Sum_probs=35.6
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHH
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQ 162 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~ 162 (405)
....++.+||-+|+|. |.++..+|+ .|+.+|+++|.++ -++.|++
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 4567889999999875 566666777 6776899999999 8888765
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.67 Score=44.67 Aligned_cols=43 Identities=37% Similarity=0.411 Sum_probs=35.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHH
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQI 163 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~ 163 (405)
.+-..|.|+|+|.|.++.+++-.....|+|||-|. ..+.|++.
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence 44468999999999999999884344999999999 77777653
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=91.73 E-value=1.5 Score=41.77 Aligned_cols=93 Identities=24% Similarity=0.224 Sum_probs=58.5
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc-----cCCCCc
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-----ELPVTK 189 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~ 189 (405)
....++.+||..|+|. |..+..+|+ .|. +|++++.++ ..+.+++ .+.. .++...-... ......
T Consensus 161 ~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~ 232 (338)
T cd08254 161 GEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKE----LGAD---EVLNSLDDSPKDKKAAGLGGG 232 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCC---EEEcCCCcCHHHHHHHhcCCC
Confidence 4466788999988874 777777888 565 799999999 8877754 2331 1111111110 123367
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|+++... + . ...+....+.|+++|.++.
T Consensus 233 ~D~vid~~-g----~----~~~~~~~~~~l~~~G~~v~ 261 (338)
T cd08254 233 FDVIFDFV-G----T----QPTFEDAQKAVKPGGRIVV 261 (338)
T ss_pred ceEEEECC-C----C----HHHHHHHHHHhhcCCEEEE
Confidence 99988521 0 1 2345566689999999874
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.5 Score=45.89 Aligned_cols=92 Identities=24% Similarity=0.434 Sum_probs=54.5
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEec---hH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEE
Q 015534 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVEC---SQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193 (405)
Q Consensus 120 ~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~---s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~I 193 (405)
..++.+||-+|+|. |.++..+++ .|+ +|++++. ++ -.+.+++ .|.. .+.....+..+... ...+|+|
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~----~Ga~-~v~~~~~~~~~~~~-~~~~d~v 242 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEE----LGAT-YVNSSKTPVAEVKL-VGEFDLI 242 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH----cCCE-EecCCccchhhhhh-cCCCCEE
Confidence 35788999999876 677777777 666 8999987 56 5555543 3321 11111111111111 2468988
Q ss_pred EEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+-.. + . +..+....+.|++||.++.
T Consensus 243 id~~-g----~----~~~~~~~~~~l~~~G~~v~ 267 (355)
T cd08230 243 IEAT-G----V----PPLAFEALPALAPNGVVIL 267 (355)
T ss_pred EECc-C----C----HHHHHHHHHHccCCcEEEE
Confidence 8521 1 1 1245556688999998874
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.47 Score=45.89 Aligned_cols=95 Identities=24% Similarity=0.278 Sum_probs=55.7
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcc---ccccc--CCCCc
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK---IEEIE--LPVTK 189 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d---~~~~~--~~~~~ 189 (405)
....++.+||-.|+|. |.++..+|+ .|+..|++++.++ -.+.+++ .|.. .++..+ ...+. .....
T Consensus 156 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~---~~i~~~~~~~~~~~~~~~~~~ 228 (347)
T PRK10309 156 AQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAM---QTFNSREMSAPQIQSVLRELR 228 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc---eEecCcccCHHHHHHHhcCCC
Confidence 3456788999999866 566666777 6776689999988 7776654 2321 122111 11111 12246
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|.++.+..+ . ...+....++|++||.++.
T Consensus 229 ~d~~v~d~~G----~----~~~~~~~~~~l~~~G~iv~ 258 (347)
T PRK10309 229 FDQLILETAG----V----PQTVELAIEIAGPRAQLAL 258 (347)
T ss_pred CCeEEEECCC----C----HHHHHHHHHHhhcCCEEEE
Confidence 7733333222 1 2344555688899999874
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.43 Score=40.45 Aligned_cols=95 Identities=17% Similarity=0.115 Sum_probs=57.1
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHH-HHHHHHHHcCCCCcE-EEEEcccc-cccCCCCceeEEEEcc-
Q 015534 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MAN-MAKQIVEANGFSNVI-TVLKGKIE-EIELPVTKVDIIISEW- 197 (405)
Q Consensus 123 ~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~-~a~~~~~~~~~~~~i-~~~~~d~~-~~~~~~~~~D~Iv~~~- 197 (405)
+++++-+|...=..-..+.+.|+++|..||.++ -+. ..+ +++ .+...|.. ++..-.++||.+.|-.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~---------dr~ssi~p~df~~~~~~y~~~fD~~as~~s 72 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFR---------DRLSSILPVDFAKNWQKYAGSFDFAASFSS 72 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccc---------cccccccHHHHHHHHHHhhccchhhheech
Confidence 678999999988887788889999999999986 221 111 111 11111211 1111137899988721
Q ss_pred ccccc--------cChhhHHHHHHHHHhcccCCcEEEe
Q 015534 198 MGYFL--------LFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 198 ~~~~l--------~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+.++. ...+++ ..+..+.++|||||.++.
T Consensus 73 iEh~GLGRYGDPidp~Gdl-~~m~~i~~vLK~GG~L~l 109 (177)
T PF03269_consen 73 IEHFGLGRYGDPIDPIGDL-RAMAKIKCVLKPGGLLFL 109 (177)
T ss_pred hccccccccCCCCCccccH-HHHHHHHHhhccCCeEEE
Confidence 11111 111233 456677899999999875
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.33 Score=45.84 Aligned_cols=55 Identities=20% Similarity=0.262 Sum_probs=39.9
Q ss_pred EEEEEcccccc--cCCCCceeEEEEcccccccc--------------ChhhHHHHHHHHHhcccCCcEEEec
Q 015534 173 ITVLKGKIEEI--ELPVTKVDIIISEWMGYFLL--------------FENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 173 i~~~~~d~~~~--~~~~~~~D~Iv~~~~~~~l~--------------~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.+++++|..+. .+++++||+|++++. |... +...+..++.++.++|||||.++..
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPP-Y~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPP-YNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCC-cccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 57889999885 356689999999874 3220 0122357888999999999998753
|
|
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=91.20 E-value=0.82 Score=40.02 Aligned_cols=110 Identities=13% Similarity=0.224 Sum_probs=65.5
Q ss_pred HhHHHHHHHHHhccCCCCCC-EEEEEcCCCcHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcCC--CCcEEEEEccc
Q 015534 105 VRTKSYQNVIYQNKFLFKDK-VVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGF--SNVITVLKGKI 180 (405)
Q Consensus 105 ~r~~~~~~~i~~~~~~~~~~-~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~~--~~~i~~~~~d~ 180 (405)
.|+..+.+.+.......++. .|+.||||-=.....+... |..+++-+|..++++.-++.+...+. +.+.+++..|+
T Consensus 60 ~Rt~~iD~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl 139 (183)
T PF04072_consen 60 ARTRYIDDAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADL 139 (183)
T ss_dssp HHHHHHHHHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-T
T ss_pred HHHHHHHHHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccc
Confidence 34544545555444333444 8999999998888888774 35578888887777666666666532 12245789998
Q ss_pred cccc---------CCCCceeEEEEccccccccChhhHHHHHHHH
Q 015534 181 EEIE---------LPVTKVDIIISEWMGYFLLFENMLNTVLYAR 215 (405)
Q Consensus 181 ~~~~---------~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~ 215 (405)
.+.. +.....-+++++.+..++ .+.....++..+
T Consensus 140 ~~~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl-~~~~~~~ll~~i 182 (183)
T PF04072_consen 140 RDDSWIDALPKAGFDPDRPTLFIAEGVLMYL-SPEQVDALLRAI 182 (183)
T ss_dssp TSHHHHHHHHHCTT-TTSEEEEEEESSGGGS--HHHHHHHHHHH
T ss_pred cchhhHHHHHHhCCCCCCCeEEEEcchhhcC-CHHHHHHHHHHh
Confidence 7532 224667788888876666 344555666544
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.19 E-value=0.04 Score=46.15 Aligned_cols=56 Identities=16% Similarity=0.139 Sum_probs=39.0
Q ss_pred EEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 173 ITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 173 i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+.+++.......+.++++|+|+++-+..++... ....+++.++++|||||++-.+.
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~-Eg~~alkechr~Lrp~G~LriAv 86 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYD-EGTSALKECHRFLRPGGKLRIAV 86 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHH-HHHHHHHHHHHHhCcCcEEEEEc
Confidence 444444444555778999999997655545333 33477899999999999986543
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=91.18 E-value=3.5 Score=36.81 Aligned_cols=111 Identities=18% Similarity=0.273 Sum_probs=66.5
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCc----HHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccc
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTG----ILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI 180 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G----~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~ 180 (405)
...|..+|. ....-+.++++.|+.| .+++.+|. .-..++++|-..+ -+...++.+...++.+.++|+.++.
T Consensus 29 ~aEfISAlA---AG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~ 105 (218)
T PF07279_consen 29 VAEFISALA---AGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA 105 (218)
T ss_pred HHHHHHHHh---ccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence 335555554 3345567889866644 23333333 2244888998888 7777788888888877789999885
Q ss_pred -ccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 181 -EEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 181 -~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+++...-..+|.++.+. - .+.....+++.+ + +.|.|-++.
T Consensus 106 ~e~~~~~~~~iDF~vVDc---~--~~d~~~~vl~~~-~-~~~~GaVVV 146 (218)
T PF07279_consen 106 PEEVMPGLKGIDFVVVDC---K--REDFAARVLRAA-K-LSPRGAVVV 146 (218)
T ss_pred HHHHHhhccCCCEEEEeC---C--chhHHHHHHHHh-c-cCCCceEEE
Confidence 44432336789988642 1 122222555543 3 455565553
|
The function of this family is unknown. |
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.98 E-value=0.63 Score=41.47 Aligned_cols=70 Identities=17% Similarity=0.232 Sum_probs=55.6
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc
Q 015534 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (405)
Q Consensus 112 ~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (405)
+-|.+........-|.+||.|.|.++..+..+|+.+...||+++ .+.-.+...++.. .+..+.++|+..+
T Consensus 40 ~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 40 DKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLRF 110 (326)
T ss_pred HHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC--cceEEecccccee
Confidence 34454555667788999999999999999999999999999999 8887776655444 4688888888654
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=90.93 E-value=2.2 Score=34.02 Aligned_cols=86 Identities=17% Similarity=0.152 Sum_probs=55.6
Q ss_pred CEEEEEcCCCc-HHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCC-CCceeEEEEcccccc
Q 015534 124 KVVLDVGAGTG-ILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWMGYF 201 (405)
Q Consensus 124 ~~VLDiGcG~G-~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~~~ 201 (405)
.+|.|+|-|.= ..+..++++|. .|+++|+++. +. + ..+.++..|+++-... -...|+|.|
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~------~a---~--~g~~~v~DDitnP~~~iY~~A~lIYS------ 76 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK------TA---P--EGLRFVVDDITNPNISIYEGADLIYS------ 76 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCC-cEEEEecccc------cC---c--ccceEEEccCCCccHHHhhCccceee------
Confidence 48999999875 45777788886 9999999871 11 1 2378999999875432 367899988
Q ss_pred ccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 202 LLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+-..+.+...+-.+.+.++-.-.+.|
T Consensus 77 iRpppEl~~~ildva~aVga~l~I~p 102 (129)
T COG1255 77 IRPPPELQSAILDVAKAVGAPLYIKP 102 (129)
T ss_pred cCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 22234444444445555554444443
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=90.87 E-value=1.9 Score=41.50 Aligned_cols=89 Identities=17% Similarity=0.032 Sum_probs=55.0
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 194 (405)
....++.+||-.|+|. |.++..+|+ .|+ +|++++.++ -.+.|++ .|.. .++. ..+. ..+.+|+++
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~----~Ga~---~vi~--~~~~--~~~~~d~~i 228 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA----LGAA---SAGG--AYDT--PPEPLDAAI 228 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----hCCc---eecc--cccc--CcccceEEE
Confidence 4567889999999864 555666667 566 799999998 7777665 3432 1121 1111 124578765
Q ss_pred EccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
-.. . . ...+....+.|++||+++.
T Consensus 229 ~~~----~----~-~~~~~~~~~~l~~~G~~v~ 252 (329)
T TIGR02822 229 LFA----P----A-GGLVPPALEALDRGGVLAV 252 (329)
T ss_pred ECC----C----c-HHHHHHHHHhhCCCcEEEE
Confidence 311 0 1 1245556688999999874
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=90.82 E-value=1.2 Score=43.80 Aligned_cols=97 Identities=23% Similarity=0.239 Sum_probs=56.6
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEE--ccccc-cc-CCCCce
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK--GKIEE-IE-LPVTKV 190 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~--~d~~~-~~-~~~~~~ 190 (405)
....++.+||-.|+|. |.++..+++ .|+..|+++|.++ -.+.|++ .|...-+.... .+... +. +..+.+
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~~~g~ 264 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMTGGGA 264 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHhCCCC
Confidence 4467889999999865 566666676 6777899999888 7777754 34321111111 01111 10 112368
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCC-cEEEe
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVLP 227 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lip 227 (405)
|+|+-.. + . +..+....+.|++| |+++.
T Consensus 265 d~vid~~-G-------~-~~~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 265 DYSFECV-G-------D-TGIATTALQSCSDGWGLTVT 293 (378)
T ss_pred CEEEECC-C-------C-hHHHHHHHHhhccCCCEEEE
Confidence 9988521 1 1 12234445778898 99863
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=90.68 E-value=1.8 Score=42.81 Aligned_cols=85 Identities=29% Similarity=0.293 Sum_probs=52.7
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 120 ~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
...|++|+-+|+|. |......++ .|+ +|+++|.++ ....|.. .|. .+. ++.+. . ...|+|++.
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~----~G~----~v~--~leea-l--~~aDVVIta 257 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAM----DGF----RVM--TMEEA-A--KIGDIFITA 257 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHh----cCC----EeC--CHHHH-H--hcCCEEEEC
Confidence 36889999999998 555555555 566 899999998 5443332 232 222 23332 2 467998863
Q ss_pred cccccccChhhHHHHH-HHHHhcccCCcEEEe
Q 015534 197 WMGYFLLFENMLNTVL-YARDKWLVDDGIVLP 227 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l-~~~~~~LkpgG~lip 227 (405)
. +. ..++ ......+|+|++++.
T Consensus 258 T--------G~-~~vI~~~~~~~mK~GailiN 280 (406)
T TIGR00936 258 T--------GN-KDVIRGEHFENMKDGAIVAN 280 (406)
T ss_pred C--------CC-HHHHHHHHHhcCCCCcEEEE
Confidence 2 11 2223 335678899998874
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=90.50 E-value=5 Score=34.40 Aligned_cols=106 Identities=15% Similarity=0.088 Sum_probs=66.8
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEccccccc-CC-
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE-LP- 186 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~- 186 (405)
.+.+.+.+. ..++.+|+-|||=+-...+.-......+++..|++. ++...+ +. .|+.-|...-. ++
T Consensus 14 ~l~~~l~~~--~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~-------RF~~~~--~~-~F~fyD~~~p~~~~~ 81 (162)
T PF10237_consen 14 FLARELLDG--ALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDR-------RFEQFG--GD-EFVFYDYNEPEELPE 81 (162)
T ss_pred HHHHHHHHh--cCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecc-------hHHhcC--Cc-ceEECCCCChhhhhh
Confidence 444555532 235679999999885444443223456899999987 222222 22 34544443321 11
Q ss_pred --CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 187 --VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 187 --~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
.++||+||+++.. +.++.+..+...+..++++++.+|..+
T Consensus 82 ~l~~~~d~vv~DPPF---l~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 82 ELKGKFDVVVIDPPF---LSEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred hcCCCceEEEECCCC---CCHHHHHHHHHHHHHHhCccceEEEec
Confidence 3799999999852 466677777788878889999888544
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=90.42 E-value=0.16 Score=40.21 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=27.7
Q ss_pred ceeEEEEccccc--cc-cChhhHHHHHHHHHhcccCCcEEEe
Q 015534 189 KVDIIISEWMGY--FL-LFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 189 ~~D~Iv~~~~~~--~l-~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+||+|+|-.+.- +| .+...+..++..+.+.|+|||.+|.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE
Confidence 589999943221 11 2345677899999999999999984
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=90.28 E-value=0.48 Score=45.73 Aligned_cols=68 Identities=29% Similarity=0.299 Sum_probs=53.4
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC--C-ceeEEEEcc
Q 015534 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV--T-KVDIIISEW 197 (405)
Q Consensus 124 ~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~--~-~~D~Iv~~~ 197 (405)
.+++|+-||.|.+.+-+.++|..-+.++|+++ .++.-+.+... ..++..|+..+.... . .+|+|+..+
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCC
Confidence 57999999999999999999998999999999 88776666542 456777777665321 2 799999854
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.10 E-value=2 Score=42.86 Aligned_cols=84 Identities=26% Similarity=0.281 Sum_probs=51.3
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 121 ~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
..|++|+-+|+|. |......++ .|+ +|+.+|.++ ....|.. .|. ++. ++.+. + ..+|+|+...
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~----~G~----~v~--~l~ea-l--~~aDVVI~aT 275 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAM----DGF----RVM--TMEEA-A--ELGDIFVTAT 275 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHh----cCC----Eec--CHHHH-H--hCCCEEEECC
Confidence 5889999999987 444333344 666 899999998 5443322 232 222 33333 1 4689998632
Q ss_pred ccccccChhhHHHHH-HHHHhcccCCcEEEe
Q 015534 198 MGYFLLFENMLNTVL-YARDKWLVDDGIVLP 227 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l-~~~~~~LkpgG~lip 227 (405)
+.. .++ ......+|+|++++-
T Consensus 276 --------G~~-~vI~~~~~~~mK~GailiN 297 (425)
T PRK05476 276 --------GNK-DVITAEHMEAMKDGAILAN 297 (425)
T ss_pred --------CCH-HHHHHHHHhcCCCCCEEEE
Confidence 111 233 345678899998874
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=89.96 E-value=1.4 Score=44.27 Aligned_cols=95 Identities=22% Similarity=0.314 Sum_probs=55.9
Q ss_pred HHHHHhccC-CCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015534 111 QNVIYQNKF-LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (405)
Q Consensus 111 ~~~i~~~~~-~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (405)
.+.|.+... ...|++|+-+|+|. |......++ .|+ +|+++|.++ -...|.. .|. .+. ++.+. +
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~----~G~----~vv--~leEa-l- 307 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALM----EGY----QVL--TLEDV-V- 307 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHh----cCC----eec--cHHHH-H-
Confidence 444444332 36789999999997 544444444 666 899999998 5444322 232 222 33332 1
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
...|+|+... +....+.......+|+||+++-
T Consensus 308 -~~ADVVI~tT--------Gt~~vI~~e~L~~MK~GAiLiN 339 (477)
T PLN02494 308 -SEADIFVTTT--------GNKDIIMVDHMRKMKNNAIVCN 339 (477)
T ss_pred -hhCCEEEECC--------CCccchHHHHHhcCCCCCEEEE
Confidence 4689998722 1111223445578999999884
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=89.93 E-value=1.7 Score=38.18 Aligned_cols=100 Identities=15% Similarity=0.149 Sum_probs=52.7
Q ss_pred EEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHH------------HHHHcCCCCcEEEEEcccccccCCCCc
Q 015534 125 VVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQ------------IVEANGFSNVITVLKGKIEEIELPVTK 189 (405)
Q Consensus 125 ~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~------------~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (405)
+|--+|.|. | .++..+|+.|. +|+|+|+++ .++..++ .+.+..-..+..+. .|.... ...
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~a---i~~ 76 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEA---IKD 76 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHH---HHH
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhh---hhc
Confidence 567788887 4 45666777876 999999999 7766543 11111101223332 233221 146
Q ss_pred eeEEEEcc-cccccc---ChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 190 VDIIISEW-MGYFLL---FENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 190 ~D~Iv~~~-~~~~l~---~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
.|+++... ....-. ....+..+++.+.+.|+++..++..+
T Consensus 77 adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~S 120 (185)
T PF03721_consen 77 ADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIES 120 (185)
T ss_dssp -SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred cceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEcc
Confidence 78877532 111111 12346778888889999977776543
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.81 E-value=8.5 Score=35.22 Aligned_cols=104 Identities=15% Similarity=0.137 Sum_probs=65.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH----cC-CCeEEEEechH-HHH-HHHHHHHHcCCCCcEEEEEccccccc--CCCCcee
Q 015534 121 FKDKVVLDVGAGTGILSLFCAK----AG-AAHVYAVECSQ-MAN-MAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVD 191 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~----~g-~~~V~~vD~s~-~~~-~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D 191 (405)
..+...+|+|+|+..-+..+.. .| ..+.+.+|+|. .++ .|++...... .-.+.-+.+|.+.-. ++...--
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~-~l~v~~l~~~~~~~La~~~~~~~R 155 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP-GLEVNALCGDYELALAELPRGGRR 155 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC-CCeEeehhhhHHHHHhcccCCCeE
Confidence 3467899999999866555554 33 35899999999 665 4555555443 223666777765422 2322223
Q ss_pred EEEE--ccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 192 IIIS--EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 192 ~Iv~--~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+++- +.+++ +.++.-..++..+...|+||-.++.
T Consensus 156 l~~flGStlGN--~tp~e~~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 156 LFVFLGSTLGN--LTPGECAVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred EEEEecccccC--CChHHHHHHHHHHHhcCCCcceEEE
Confidence 3332 22222 2345566889999999999998774
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=89.71 E-value=0.76 Score=37.30 Aligned_cols=81 Identities=25% Similarity=0.255 Sum_probs=52.4
Q ss_pred CCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc------CCCCceeEEEEcccccccc
Q 015534 132 GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTKVDIIISEWMGYFLL 203 (405)
Q Consensus 132 G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~~D~Iv~~~~~~~l~ 203 (405)
|.|.++..+|+ .| .+|+++|.++ -.+.+++. |. -.++..+-.++. .+...+|+|+-.. .
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~----Ga---~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~-----g 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKEL----GA---DHVIDYSDDDFVEQIRELTGGRGVDVVIDCV-----G 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHT----TE---SEEEETTTSSHHHHHHHHTTTSSEEEEEESS-----S
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhh----cc---cccccccccccccccccccccccceEEEEec-----C
Confidence 45888888888 67 7999999999 88887653 32 123333222111 2235899998521 1
Q ss_pred ChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 204 FENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 204 ~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
. ...+.....+|+|+|.++...
T Consensus 68 ~----~~~~~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 68 S----GDTLQEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp S----HHHHHHHHHHEEEEEEEEEES
T ss_pred c----HHHHHHHHHHhccCCEEEEEE
Confidence 1 245566668999999987543
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=89.66 E-value=1.4 Score=40.80 Aligned_cols=75 Identities=20% Similarity=0.285 Sum_probs=49.4
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc------CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA------GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE 182 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~------g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~ 182 (405)
+...+.+...+.++..++|+|||.|.++.++++. +...++.||-.. -. .+...+........++=+..|+.+
T Consensus 6 li~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~d 84 (259)
T PF05206_consen 6 LIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKD 84 (259)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeec
Confidence 3444454445567789999999999999999994 245889999865 22 233333333311246777788888
Q ss_pred ccC
Q 015534 183 IEL 185 (405)
Q Consensus 183 ~~~ 185 (405)
+.+
T Consensus 85 l~l 87 (259)
T PF05206_consen 85 LDL 87 (259)
T ss_pred cch
Confidence 764
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=89.55 E-value=1.7 Score=43.91 Aligned_cols=59 Identities=17% Similarity=0.145 Sum_probs=44.1
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc
Q 015534 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (405)
Q Consensus 123 ~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (405)
..+++|+-||.|.+++-+-++|...|.++|+++ +.+.-+.++... ....++.+|+.++.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~---p~~~~~~~DI~~i~ 147 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD---PATHRFNEDIRDIT 147 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC---CccceeccChhhCc
Confidence 459999999999999999889988899999999 777766654211 11344556666654
|
|
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=89.39 E-value=0.94 Score=43.22 Aligned_cols=48 Identities=27% Similarity=0.356 Sum_probs=40.7
Q ss_pred hccCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHH
Q 015534 116 QNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQI 163 (405)
Q Consensus 116 ~~~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~ 163 (405)
......+|.+|.-+|||. |..++.-|+ +|+.+++|+|+++ -++.|++.
T Consensus 179 nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 179 NTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred hcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence 345678899999999997 777777777 7999999999999 99998874
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.33 E-value=4.1 Score=38.20 Aligned_cols=96 Identities=19% Similarity=0.271 Sum_probs=59.4
Q ss_pred EEEEEcCCC--cHHHHHHHHcCCCeEEEEechH-HHHHHHHHH-------HHcCC-C--------CcEEEEEcccccccC
Q 015534 125 VVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIV-------EANGF-S--------NVITVLKGKIEEIEL 185 (405)
Q Consensus 125 ~VLDiGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~-------~~~~~-~--------~~i~~~~~d~~~~~~ 185 (405)
+|--||+|. +.++..+++.|. .|+++|.++ .++.+++.+ .+.+. . .++++ ..|...+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~~-- 80 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDDL-- 80 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHHh--
Confidence 688899996 466777777776 999999999 887655322 22331 1 12332 2333221
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCc
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
..+|+|+-... ........++..+.+.++|+..++....
T Consensus 81 --~~aDlVi~av~----e~~~~k~~~~~~l~~~~~~~~il~s~ts 119 (282)
T PRK05808 81 --KDADLVIEAAT----ENMDLKKKIFAQLDEIAKPEAILATNTS 119 (282)
T ss_pred --ccCCeeeeccc----ccHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 56899985321 1112335788888888999887765443
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.30 E-value=1.4 Score=42.66 Aligned_cols=96 Identities=21% Similarity=0.166 Sum_probs=57.7
Q ss_pred cCCCCCCEEEEEcC-C-CcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEc-cccc-cc-CCCCce
Q 015534 118 KFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEE-IE-LPVTKV 190 (405)
Q Consensus 118 ~~~~~~~~VLDiGc-G-~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~-~~-~~~~~~ 190 (405)
....+|.+||-.|+ | .|.++..+|+ .|+ +|++++.++ -.+.+++. .|....+..... +..+ +. ...+.+
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~~gv 229 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNK---LGFDEAFNYKEEPDLDAALKRYFPEGI 229 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHh---cCCCEEEECCCcccHHHHHHHHCCCCc
Confidence 45678899999998 3 5778888888 566 799999888 76666532 233211111111 2211 10 112469
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+|+-. ++ . ..+....+.|++||.++.
T Consensus 230 D~v~d~-vG-------~--~~~~~~~~~l~~~G~iv~ 256 (348)
T PLN03154 230 DIYFDN-VG-------G--DMLDAALLNMKIHGRIAV 256 (348)
T ss_pred EEEEEC-CC-------H--HHHHHHHHHhccCCEEEE
Confidence 999852 11 1 234555678999999873
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=89.23 E-value=0.87 Score=42.92 Aligned_cols=46 Identities=26% Similarity=0.299 Sum_probs=38.1
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHH
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQI 163 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~ 163 (405)
....+|.+|.-+|+|. |+...+-++ +|+.+++|||+++ -.+.|++.
T Consensus 188 Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred cccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 4568899999999997 666666666 7999999999999 88888764
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.20 E-value=2.6 Score=40.51 Aligned_cols=97 Identities=18% Similarity=0.154 Sum_probs=60.9
Q ss_pred CEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHH-------HcCCC-----CcEEEEEcccccccCCCC
Q 015534 124 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVE-------ANGFS-----NVITVLKGKIEEIELPVT 188 (405)
Q Consensus 124 ~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~-------~~~~~-----~~i~~~~~d~~~~~~~~~ 188 (405)
++|--||+|+ | .++..++..|. .|+..|.++ .++.++..+. +.++. .++++.. ++.+. -.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~a---v~ 82 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEAC---VA 82 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHHH---hc
Confidence 5799999996 2 56666777877 999999998 8776655433 12211 2233322 22221 15
Q ss_pred ceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
..|+|+-.. ......-..++..+.+.++|+.+|--++
T Consensus 83 ~aDlViEav----pE~l~vK~~lf~~l~~~~~~~aIlaSnT 119 (321)
T PRK07066 83 DADFIQESA----PEREALKLELHERISRAAKPDAIIASST 119 (321)
T ss_pred CCCEEEECC----cCCHHHHHHHHHHHHHhCCCCeEEEECC
Confidence 689998643 2233445678888989999988554333
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=89.03 E-value=2.8 Score=33.21 Aligned_cols=82 Identities=17% Similarity=0.195 Sum_probs=48.9
Q ss_pred CCCcHHHHHHHH---cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEEccccccc
Q 015534 131 AGTGILSLFCAK---AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIISEWMGYFL 202 (405)
Q Consensus 131 cG~G~l~~~la~---~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv~~~~~~~l 202 (405)
||.|.++..+++ .+...|+.+|.++ .++.+++. + +.++.+|..+.. ..-.++|.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~----~~~i~gd~~~~~~l~~a~i~~a~~vv~~~----- 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G----VEVIYGDATDPEVLERAGIEKADAVVILT----- 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T----SEEEES-TTSHHHHHHTTGGCESEEEEES-----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c----cccccccchhhhHHhhcCccccCEEEEcc-----
Confidence 444556555555 2345899999999 87766542 2 678999998754 2346899888732
Q ss_pred cChhhHHHHHHHHHhcccCCcEEE
Q 015534 203 LFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 203 ~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
........+....+-+.|...++
T Consensus 71 -~~d~~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 71 -DDDEENLLIALLARELNPDIRII 93 (116)
T ss_dssp -SSHHHHHHHHHHHHHHTTTSEEE
T ss_pred -CCHHHHHHHHHHHHHHCCCCeEE
Confidence 11222223333445666776665
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=89.00 E-value=0.58 Score=42.60 Aligned_cols=54 Identities=17% Similarity=0.279 Sum_probs=39.3
Q ss_pred EEEEEcccccc--cCCCCceeEEEEcccccccc-----C--------hhhHHHHHHHHHhcccCCcEEEe
Q 015534 173 ITVLKGKIEEI--ELPVTKVDIIISEWMGYFLL-----F--------ENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 173 i~~~~~d~~~~--~~~~~~~D~Iv~~~~~~~l~-----~--------~~~~~~~l~~~~~~LkpgG~lip 227 (405)
++++++|..++ .++++++|+|++++. |.+. + ..-....+.++.|+|||||.++.
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPP-Y~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPP-YLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCC-cccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 46788888776 477899999999874 3321 0 12245778899999999998763
|
|
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=88.93 E-value=0.74 Score=44.53 Aligned_cols=94 Identities=21% Similarity=0.204 Sum_probs=58.0
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc----c-c-CCCC
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE----I-E-LPVT 188 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~----~-~-~~~~ 188 (405)
....++.+||-.|+|. |..+..+|+ .|...|+++|.++ ..+.+++ .|.. .++..+-.+ + . ....
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~v~~~~~~~~~~i~~~~~~~ 234 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGAT---DIVDYKNGDVVEQILKLTGGK 234 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc---eEecCCCCCHHHHHHHHhCCC
Confidence 4466788999998764 566666777 6777899999998 7777664 3431 222211111 1 0 1224
Q ss_pred ceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.+|+|+... .+ ...+....+.|+++|+++-
T Consensus 235 ~~d~vld~~-----g~----~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 235 GVDAVIIAG-----GG----QDTFEQALKVLKPGGTISN 264 (351)
T ss_pred CCcEEEECC-----CC----HHHHHHHHHHhhcCCEEEE
Confidence 699998521 11 1344556688899998873
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.66 E-value=0.53 Score=46.89 Aligned_cols=106 Identities=17% Similarity=0.043 Sum_probs=69.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-------CCCCcee
Q 015534 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-------LPVTKVD 191 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~~D 191 (405)
..+..+|-+|-|.|.+..++.. .+..++++|++.| |++.|++++....- ++..+.-.|..+.. ..+..||
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~d 372 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPD 372 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCc
Confidence 3456799999999999888776 6667999999999 99999998744321 12333333332221 1346899
Q ss_pred EEEEcc--cc-ccccC---hhhHHHHHHHHHhcccCCcEEEe
Q 015534 192 IIISEW--MG-YFLLF---ENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 192 ~Iv~~~--~~-~~l~~---~~~~~~~l~~~~~~LkpgG~lip 227 (405)
++.... -. +.+.- .-....++..+...|.|.|.++.
T Consensus 373 vl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~i 414 (482)
T KOG2352|consen 373 VLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFII 414 (482)
T ss_pred EEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEE
Confidence 998742 11 11110 11235677888899999999864
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.48 E-value=1.7 Score=41.84 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=38.5
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc---------CCCeEEEEechH-HHHHHHHHHHHc
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKA---------GAAHVYAVECSQ-MANMAKQIVEAN 167 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~---------g~~~V~~vD~s~-~~~~a~~~~~~~ 167 (405)
.......++|||+|+|.++.-+++. ...++..||+|+ ..+.-+++++..
T Consensus 74 g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 74 GRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred cCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 3344568999999999998777663 156999999999 888888877754
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=88.40 E-value=2.1 Score=40.15 Aligned_cols=73 Identities=23% Similarity=0.336 Sum_probs=57.0
Q ss_pred CCCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----------C
Q 015534 120 LFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------L 185 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~ 185 (405)
...|..||-=|.|.| .++..+|++|+ +++..|++. -...-.+.+++.| ++.....|+.+.. -
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHH
Confidence 456789999999998 67888889988 999999999 6666666666665 5888888887653 1
Q ss_pred CCCceeEEEEc
Q 015534 186 PVTKVDIIISE 196 (405)
Q Consensus 186 ~~~~~D~Iv~~ 196 (405)
.-+..|++|.+
T Consensus 111 e~G~V~ILVNN 121 (300)
T KOG1201|consen 111 EVGDVDILVNN 121 (300)
T ss_pred hcCCceEEEec
Confidence 24789999986
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.39 E-value=3.5 Score=38.94 Aligned_cols=93 Identities=22% Similarity=0.284 Sum_probs=57.4
Q ss_pred CEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc----------CC---------CCcEEEEEcccc
Q 015534 124 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN----------GF---------SNVITVLKGKIE 181 (405)
Q Consensus 124 ~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~----------~~---------~~~i~~~~~d~~ 181 (405)
.+|.-||+|. | .++..+++.|. .|+.+|.++ .++.+++.+... +. ..++.+. .+..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSYE 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCHH
Confidence 4788999996 3 56666777776 899999999 888766544321 11 0112221 1221
Q ss_pred cccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 182 EIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 182 ~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
. -...|+|+.... ........++..+.+.++|+.+++
T Consensus 82 ~----~~~aDlVieav~----e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 82 S----LSDADFIVEAVP----EKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred H----hCCCCEEEEcCc----CcHHHHHHHHHHHHhhCCCCeEEE
Confidence 1 145799886432 122235677778888888887665
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=88.07 E-value=2.7 Score=39.49 Aligned_cols=83 Identities=22% Similarity=0.219 Sum_probs=51.1
Q ss_pred EEEEEcCCC--cHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccccc
Q 015534 125 VVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (405)
Q Consensus 125 ~VLDiGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~ 201 (405)
+|.-||+|. |.++..+++.|. +|+++|.++ .++.+.+. +. +.....+.. . ....|+|+....
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~----g~---~~~~~~~~~-~---~~~aDlVilavp--- 66 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIER----GL---VDEASTDLS-L---LKDCDLVILALP--- 66 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHC----CC---cccccCCHh-H---hcCCCEEEEcCC---
Confidence 577889886 456667777766 899999998 77766542 32 221112221 1 156899986432
Q ss_pred ccChhhHHHHHHHHHhcccCCcEE
Q 015534 202 LLFENMLNTVLYARDKWLVDDGIV 225 (405)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~l 225 (405)
......++..+...++++.++
T Consensus 67 ---~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 67 ---IGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred ---HHHHHHHHHHHHHhCCCCcEE
Confidence 234456667777777776544
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.04 E-value=3.5 Score=38.87 Aligned_cols=96 Identities=21% Similarity=0.147 Sum_probs=58.3
Q ss_pred CEEEEEcCCCc--HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc--------CCC---------CcEEEEEcccccc
Q 015534 124 KVVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN--------GFS---------NVITVLKGKIEEI 183 (405)
Q Consensus 124 ~~VLDiGcG~G--~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~--------~~~---------~~i~~~~~d~~~~ 183 (405)
.+|.-||+|.- .++..+++.|. +|+.+|.++ .++.+++.+... .+. .++++. .|..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~a 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAEA 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHHH
Confidence 46889999963 45566666766 899999999 888877653211 110 123322 333322
Q ss_pred cCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
-...|+|+.... ........++..+...++++.++.-.
T Consensus 82 ---~~~aDlVieavp----e~~~~k~~~~~~l~~~~~~~~ii~sn 119 (287)
T PRK08293 82 ---VKDADLVIEAVP----EDPEIKGDFYEELAKVAPEKTIFATN 119 (287)
T ss_pred ---hcCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCCEEEEC
Confidence 156899986432 11234567777787888777766433
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=87.78 E-value=3.1 Score=39.98 Aligned_cols=92 Identities=16% Similarity=0.211 Sum_probs=55.6
Q ss_pred CCCC--CEEEEEcC--CCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CCCC
Q 015534 120 LFKD--KVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVT 188 (405)
Q Consensus 120 ~~~~--~~VLDiGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~ 188 (405)
..++ .+||-.|+ |.|..+..+|+ .|+.+|++++.++ ..+.+++. .|.. .++..+-.++. ...+
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~---~vi~~~~~~~~~~i~~~~~~ 223 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFD---AAINYKTDNVAERLRELCPE 223 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCc---EEEECCCCCHHHHHHHHCCC
Confidence 4444 89999986 45777777888 6766899999988 77666553 2332 12222111110 1125
Q ss_pred ceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.+|+|+... + . . .+....+.|+++|.++.
T Consensus 224 gvd~vid~~-g----~-~----~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 224 GVDVYFDNV-G----G-E----ISDTVISQMNENSHIIL 252 (345)
T ss_pred CceEEEECC-C----c-H----HHHHHHHHhccCCEEEE
Confidence 699998521 1 1 1 12445678999999874
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.77 E-value=2.4 Score=41.36 Aligned_cols=91 Identities=19% Similarity=0.181 Sum_probs=51.7
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HH-HHHHHHHHHcCCCCcEEEEE-cccccccCCCCceeEEE
Q 015534 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MA-NMAKQIVEANGFSNVITVLK-GKIEEIELPVTKVDIII 194 (405)
Q Consensus 120 ~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~-~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~D~Iv 194 (405)
..++.+||-.|+|. |.++..+|+ .|+ +|++++.++ -. +.+++ .|.. .++. .+...+....+.+|+|+
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~~----~Ga~---~vi~~~~~~~~~~~~~~~D~vi 252 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAINR----LGAD---SFLVSTDPEKMKAAIGTMDYII 252 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHHh----CCCc---EEEcCCCHHHHHhhcCCCCEEE
Confidence 45788999999875 667777777 566 788888776 33 33332 3431 1221 11111111113589888
Q ss_pred EccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
-. ++ . ...+....+.|++||.++.
T Consensus 253 d~-~g-------~-~~~~~~~~~~l~~~G~iv~ 276 (360)
T PLN02586 253 DT-VS-------A-VHALGPLLGLLKVNGKLIT 276 (360)
T ss_pred EC-CC-------C-HHHHHHHHHHhcCCcEEEE
Confidence 42 11 1 1234455688999999873
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.73 E-value=6.1 Score=37.26 Aligned_cols=97 Identities=20% Similarity=0.310 Sum_probs=61.7
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHH-------cCCC---------CcEEEEEccccccc
Q 015534 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-------NGFS---------NVITVLKGKIEEIE 184 (405)
Q Consensus 124 ~~VLDiGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~-------~~~~---------~~i~~~~~d~~~~~ 184 (405)
.+|--||+|+ +.++..++..|. .|+.+|.++ .++.+.+++.+ .|.- .++++ ..|...+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~~- 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDLGDF- 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCHHHh-
Confidence 3788999996 366677777877 999999999 98887665432 1210 12322 2333222
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcc-cCCcEEEecCc
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL-VDDGIVLPDKA 230 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~L-kpgG~lip~~~ 230 (405)
...|+|+-.. ......-..++..+.+.+ +|+.++.-++.
T Consensus 83 ---~~~d~ViEav----~E~~~~K~~l~~~l~~~~~~~~~il~snTS 122 (286)
T PRK07819 83 ---ADRQLVIEAV----VEDEAVKTEIFAELDKVVTDPDAVLASNTS 122 (286)
T ss_pred ---CCCCEEEEec----ccCHHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 5689998532 223344557777888888 77877765443
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.71 E-value=2.8 Score=39.47 Aligned_cols=97 Identities=16% Similarity=0.203 Sum_probs=57.1
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHH-------cC-CC--------CcEEEEEccccccc
Q 015534 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-------NG-FS--------NVITVLKGKIEEIE 184 (405)
Q Consensus 124 ~~VLDiGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~-------~~-~~--------~~i~~~~~d~~~~~ 184 (405)
++|.-||+|. +.++..+++.|. +|+.+|.++ .++.+.+.... .+ +. .++++. .+..+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 78 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLKAA- 78 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHHHh-
Confidence 3688899986 255666677776 899999999 88877654321 11 00 112222 222221
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
-...|+|+.... ........++..+.+.++|+.++..+.
T Consensus 79 --~~~aD~Vi~avp----e~~~~k~~~~~~l~~~~~~~~il~~~t 117 (288)
T PRK09260 79 --VADADLVIEAVP----EKLELKKAVFETADAHAPAECYIATNT 117 (288)
T ss_pred --hcCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 156899986332 112233466677778888887665443
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=87.66 E-value=0.97 Score=44.75 Aligned_cols=102 Identities=25% Similarity=0.167 Sum_probs=59.4
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEc---cccc-cc--CCCC
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG---KIEE-IE--LPVT 188 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~---d~~~-~~--~~~~ 188 (405)
....++.+||-.|+|. |.++..+|+ .|++.|+++|.++ -++.|++. |. + .+... +..+ +. ....
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----Ga-~--~v~~~~~~~~~~~v~~~~~~~ 253 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----GC-E--TVDLSKDATLPEQIEQILGEP 253 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----CC-e--EEecCCcccHHHHHHHHcCCC
Confidence 3456788888888875 666666777 6887788889888 77777653 33 1 12211 1111 11 1224
Q ss_pred ceeEEEEccccccc------cChhhHHHHHHHHHhcccCCcEEEe
Q 015534 189 KVDIIISEWMGYFL------LFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l------~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.+|+++-.. +.-- .........+....+++++||.++.
T Consensus 254 g~Dvvid~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~ 297 (393)
T TIGR02819 254 EVDCAVDCV-GFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGI 297 (393)
T ss_pred CCcEEEECC-CCccccccccccccchHHHHHHHHHHhhCCCEEEE
Confidence 689998521 1100 0001112356666689999999874
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=87.63 E-value=2.6 Score=36.30 Aligned_cols=100 Identities=21% Similarity=0.170 Sum_probs=59.1
Q ss_pred EEcCCCcHHHHHHHH-cC-CCeEEEEec--hH-HHHH---HHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEE
Q 015534 128 DVGAGTGILSLFCAK-AG-AAHVYAVEC--SQ-MANM---AKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIIS 195 (405)
Q Consensus 128 DiGcG~G~l~~~la~-~g-~~~V~~vD~--s~-~~~~---a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv~ 195 (405)
=||=|.=.++..+++ .+ ...++|.-. .+ ..+. +..++....-.+......-|++.+. ....+||.|+-
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 467777777888888 45 556666544 33 3322 2233333211121233445666654 23578999998
Q ss_pred ccccccc----------cChhhHHHHHHHHHhcccCCcEEEe
Q 015534 196 EWMGYFL----------LFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 196 ~~~~~~l----------~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+...... .+...+..++..+.++|+++|.|..
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhV 123 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHV 123 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 7642220 1223567888899999999998874
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=87.60 E-value=3.6 Score=39.18 Aligned_cols=96 Identities=17% Similarity=0.073 Sum_probs=57.3
Q ss_pred ccCCCCCCEEEEEcC--CCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEc-ccccc--cCCCCc
Q 015534 117 NKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEEI--ELPVTK 189 (405)
Q Consensus 117 ~~~~~~~~~VLDiGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~~--~~~~~~ 189 (405)
.....++.+||-.|+ |.|.++..+++ .|+ +|++++.++ -.+.+++ .|...-+..... +..+. ....+.
T Consensus 133 ~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~~g 207 (325)
T TIGR02825 133 ICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKASPDG 207 (325)
T ss_pred HhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHhCCCC
Confidence 345678899999995 35777788888 566 899999888 7777654 343211111110 11111 012246
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|+|+-. ++ .. .+....++|+++|+++.
T Consensus 208 vdvv~d~-~G-----~~----~~~~~~~~l~~~G~iv~ 235 (325)
T TIGR02825 208 YDCYFDN-VG-----GE----FSNTVIGQMKKFGRIAI 235 (325)
T ss_pred eEEEEEC-CC-----HH----HHHHHHHHhCcCcEEEE
Confidence 9999852 11 11 23455688999999873
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.25 E-value=6.5 Score=37.09 Aligned_cols=98 Identities=22% Similarity=0.252 Sum_probs=60.5
Q ss_pred CEEEEEcCCCc--HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc-------CC-C--------CcEEEEEccccccc
Q 015534 124 KVVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------GF-S--------NVITVLKGKIEEIE 184 (405)
Q Consensus 124 ~~VLDiGcG~G--~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-------~~-~--------~~i~~~~~d~~~~~ 184 (405)
.+|.-||+|.- .++..+++.|. .|+.+|.++ .++.+.+.+..+ +. + .++++. .+...+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 81 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLEDL- 81 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHHHh-
Confidence 47889999973 45666677776 999999999 887765443321 21 1 123332 333322
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCce
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
...|+|+.... ........++..+...++|+.+++-...+
T Consensus 82 ---~~aD~Vieavp----e~~~~k~~~~~~l~~~~~~~~ii~s~ts~ 121 (292)
T PRK07530 82 ---ADCDLVIEAAT----EDETVKRKIFAQLCPVLKPEAILATNTSS 121 (292)
T ss_pred ---cCCCEEEEcCc----CCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 56899986321 12234456777888889998877744443
|
|
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=87.16 E-value=5.5 Score=38.60 Aligned_cols=95 Identities=21% Similarity=0.231 Sum_probs=53.8
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccc----ccc--CCCCce
Q 015534 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIE----EIE--LPVTKV 190 (405)
Q Consensus 120 ~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~----~~~--~~~~~~ 190 (405)
..++.+||-.|+|. |..+..+|+ .|+++|++++.++ -.+.+++ .|....+.....+.. .+. .+...+
T Consensus 175 ~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~ 250 (361)
T cd08231 175 VGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGADATIDIDELPDPQRRAIVRDITGGRGA 250 (361)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCCeEEcCcccccHHHHHHHHHHhCCCCC
Confidence 34788999998754 455556666 5666899999888 6666543 343211111111110 110 122569
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+|+... + . ...+....+.|+++|+++.
T Consensus 251 d~vid~~-g----~----~~~~~~~~~~l~~~G~~v~ 278 (361)
T cd08231 251 DVVIEAS-G----H----PAAVPEGLELLRRGGTYVL 278 (361)
T ss_pred cEEEECC-C----C----hHHHHHHHHHhccCCEEEE
Confidence 9998521 1 1 1234445588899999873
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=87.10 E-value=1.1 Score=44.10 Aligned_cols=96 Identities=18% Similarity=0.149 Sum_probs=50.9
Q ss_pred CCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 122 KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 122 ~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
++.+|+-+|+|. |..+...++ .|+ +|+.+|.++ -++.+.... + ..+.....+...+.-.-..+|+|+....
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~---g--~~v~~~~~~~~~l~~~l~~aDvVI~a~~ 239 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEF---G--GRIHTRYSNAYEIEDAVKRADLLIGAVL 239 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhc---C--ceeEeccCCHHHHHHHHccCCEEEEccc
Confidence 556899999984 555555555 677 799999988 655544322 1 1122111221222111146899997421
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
......+.-+-....+.++||++++
T Consensus 240 ---~~g~~~p~lit~~~l~~mk~g~vIv 264 (370)
T TIGR00518 240 ---IPGAKAPKLVSNSLVAQMKPGAVIV 264 (370)
T ss_pred ---cCCCCCCcCcCHHHHhcCCCCCEEE
Confidence 0000111111233346679998876
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=87.09 E-value=4.2 Score=40.40 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=35.5
Q ss_pred cCCCCCCEEEEEc-CC-CcHHHHHHHHc---CCCeEEEEechH-HHHHHHHH
Q 015534 118 KFLFKDKVVLDVG-AG-TGILSLFCAKA---GAAHVYAVECSQ-MANMAKQI 163 (405)
Q Consensus 118 ~~~~~~~~VLDiG-cG-~G~l~~~la~~---g~~~V~~vD~s~-~~~~a~~~ 163 (405)
....++.+||-+| +| .|.++..+++. |+.+|+++|.++ -++.|++.
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 3456788999997 45 47777777874 456899999999 88888775
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.04 E-value=1.2 Score=43.53 Aligned_cols=94 Identities=24% Similarity=0.309 Sum_probs=57.4
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc----cc-CCCCc
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE----IE-LPVTK 189 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~----~~-~~~~~ 189 (405)
....++.+||-.|+|. |.++..+|+ .|+.+|+++|.++ ..+.+++. +. -.++..+-.. +. .....
T Consensus 182 ~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~----g~---~~~i~~~~~~~~~~v~~~~~~~ 254 (365)
T cd08278 182 LKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL----GA---THVINPKEEDLVAAIREITGGG 254 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CC---cEEecCCCcCHHHHHHHHhCCC
Confidence 3456788999998765 666777777 6787899999998 77766542 32 1222211111 10 11356
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|+|+-.. + .. ..+....+.|+++|.++.
T Consensus 255 ~d~vld~~-g----~~----~~~~~~~~~l~~~G~~v~ 283 (365)
T cd08278 255 VDYALDTT-G----VP----AVIEQAVDALAPRGTLAL 283 (365)
T ss_pred CcEEEECC-C----Cc----HHHHHHHHHhccCCEEEE
Confidence 99998521 1 11 234455678899999873
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=86.79 E-value=4.7 Score=38.38 Aligned_cols=94 Identities=26% Similarity=0.268 Sum_probs=57.1
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc----cCCCCce
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI----ELPVTKV 190 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~ 190 (405)
....++.+||.+|+|. |..+..+++ .|.+.|++++.++ ..+.+++. +.. .++..+-... ......+
T Consensus 155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~v 227 (334)
T cd08234 155 LGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GAT---ETVDPSREDPEAQKEDNPYGF 227 (334)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCe---EEecCCCCCHHHHHHhcCCCC
Confidence 4567788999998753 556666666 5665589999988 87776442 321 2232221111 1123579
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+++... + . ...+....+.|+++|.++-
T Consensus 228 d~v~~~~-~----~----~~~~~~~~~~l~~~G~~v~ 255 (334)
T cd08234 228 DVVIEAT-G----V----PKTLEQAIEYARRGGTVLV 255 (334)
T ss_pred cEEEECC-C----C----hHHHHHHHHHHhcCCEEEE
Confidence 9999631 1 1 1334455678899998873
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=86.70 E-value=3 Score=40.34 Aligned_cols=44 Identities=34% Similarity=0.364 Sum_probs=34.9
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHH
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQ 162 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~ 162 (405)
....++.+||-+|+|. |.++..+|+ .|+ +|+++|.++ -++.+++
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG 208 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence 4567789999999976 677777777 566 799999999 8877765
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=86.68 E-value=3.8 Score=43.94 Aligned_cols=99 Identities=17% Similarity=0.222 Sum_probs=66.4
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc-------C-C--------CCcEEEEEccccccc
Q 015534 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------G-F--------SNVITVLKGKIEEIE 184 (405)
Q Consensus 124 ~~VLDiGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-------~-~--------~~~i~~~~~d~~~~~ 184 (405)
.+|.-||+|+ ..++..++..|. .|+.+|.++ .++.+.+.+... + + -.++++. .|...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAGF- 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh-
Confidence 5799999999 366777888877 999999999 988776654321 1 1 1234433 233222
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCcee
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASL 232 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (405)
...|+|+=.. ......-..++..+.++++|+.+|.-++.++
T Consensus 391 ---~~aDlViEav----~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl 431 (715)
T PRK11730 391 ---ERVDVVVEAV----VENPKVKAAVLAEVEQKVREDTILASNTSTI 431 (715)
T ss_pred ---cCCCEEEecc----cCcHHHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 5789888432 2233455688999999999998876555443
|
|
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=86.66 E-value=1.5 Score=42.08 Aligned_cols=92 Identities=27% Similarity=0.347 Sum_probs=55.1
Q ss_pred CCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcc---ccc-c--cCCCCc
Q 015534 119 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK---IEE-I--ELPVTK 189 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d---~~~-~--~~~~~~ 189 (405)
...++.+||..|+|. |..+..+|+ .|..+|++++.++ ..+.+++. +. ..++... ..+ + ..+.+.
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~---~~vi~~~~~~~~~~i~~~~~~~~ 236 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GA---TDIINPKNGDIVEQILELTGGRG 236 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CC---cEEEcCCcchHHHHHHHHcCCCC
Confidence 456788999987753 666677777 5656899998888 77666543 22 1222221 111 1 122357
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
+|+++... + . ...+....+.|+++|+++
T Consensus 237 ~d~vld~~-g----~----~~~~~~~~~~l~~~G~~v 264 (347)
T cd05278 237 VDCVIEAV-G----F----EETFEQAVKVVRPGGTIA 264 (347)
T ss_pred CcEEEEcc-C----C----HHHHHHHHHHhhcCCEEE
Confidence 99998521 1 1 124455568889999987
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.10 E-value=4.5 Score=38.54 Aligned_cols=76 Identities=16% Similarity=0.130 Sum_probs=50.5
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----------CC
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LP 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 186 (405)
..++++|-.|++.| .++..+++.|+ +|+.+.-++ -.+.+.+.+....-..++.++..|+.+.. -.
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 45789999998877 34555666776 899888887 55555444433221235888999987643 01
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
.++.|++|.+.
T Consensus 91 ~~~iD~li~nA 101 (313)
T PRK05854 91 GRPIHLLINNA 101 (313)
T ss_pred CCCccEEEECC
Confidence 25789999864
|
|
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=86.09 E-value=1 Score=46.16 Aligned_cols=98 Identities=21% Similarity=0.223 Sum_probs=59.5
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHH-cC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEccccccc--------CCC
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------LPV 187 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~-~g-~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~ 187 (405)
.-+.++..|||+||..|.+...+++ .| ..-|+|||+-|+ ..+++ +.-++.|++.-. +..
T Consensus 40 ~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi----------kp~~~-c~t~v~dIttd~cr~~l~k~l~t 108 (780)
T KOG1098|consen 40 KFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI----------KPIPN-CDTLVEDITTDECRSKLRKILKT 108 (780)
T ss_pred ccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec----------ccCCc-cchhhhhhhHHHHHHHHHHHHHh
Confidence 3456788999999999999999999 44 347999999771 12222 333344443321 123
Q ss_pred CceeEEEEcccccccc---ChhhH-----HHHHHHHHhcccCCcEEE
Q 015534 188 TKVDIIISEWMGYFLL---FENML-----NTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~---~~~~~-----~~~l~~~~~~LkpgG~li 226 (405)
-+.|+|+..+..++.. +.... -..+.....+|..||.++
T Consensus 109 ~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv 155 (780)
T KOG1098|consen 109 WKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFV 155 (780)
T ss_pred CCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc
Confidence 5679999865433221 11111 123344457888999865
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.00 E-value=8.3 Score=36.25 Aligned_cols=74 Identities=28% Similarity=0.433 Sum_probs=46.7
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH--HHHHHHHHHHHcCCCCcEEEEEccccccc-----CC----
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ--MANMAKQIVEANGFSNVITVLKGKIEEIE-----LP---- 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~--~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~---- 186 (405)
.++++||-.|++.| .++..+++.|+ +|+.++.++ ..+.....+...+ .++.++.+|+.+.. +.
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~ 120 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVR 120 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHH
Confidence 45789999998776 34555566776 788887763 3333334444333 35788889886543 10
Q ss_pred -CCceeEEEEcc
Q 015534 187 -VTKVDIIISEW 197 (405)
Q Consensus 187 -~~~~D~Iv~~~ 197 (405)
-+.+|+||.+.
T Consensus 121 ~~~~iD~lI~~A 132 (290)
T PRK06701 121 ELGRLDILVNNA 132 (290)
T ss_pred HcCCCCEEEECC
Confidence 14689998753
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=85.81 E-value=2 Score=38.29 Aligned_cols=33 Identities=33% Similarity=0.467 Sum_probs=27.5
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEech
Q 015534 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS 154 (405)
Q Consensus 122 ~~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s 154 (405)
.+.+||-+|||. | ..+..|++.|.++++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 557899999995 4 56777888999999999977
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=85.80 E-value=4.4 Score=43.49 Aligned_cols=99 Identities=18% Similarity=0.204 Sum_probs=66.1
Q ss_pred CEEEEEcCCCc--HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc-------C-C--------CCcEEEEEccccccc
Q 015534 124 KVVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------G-F--------SNVITVLKGKIEEIE 184 (405)
Q Consensus 124 ~~VLDiGcG~G--~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-------~-~--------~~~i~~~~~d~~~~~ 184 (405)
++|--||+|+= .++..++..|. .|+.+|.++ .++.+.+++... + + -.++++. .|...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 390 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYAGF- 390 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh-
Confidence 47999999973 66777778877 999999999 888877655321 1 1 0233332 122222
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCcee
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASL 232 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (405)
...|+|+=.. ......-..++.++.++++|+.+|.-++.++
T Consensus 391 ---~~aDlViEav----~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l 431 (714)
T TIGR02437 391 ---DNVDIVVEAV----VENPKVKAAVLAEVEQHVREDAILASNTSTI 431 (714)
T ss_pred ---cCCCEEEEcC----cccHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 5789998432 2333456789999999999998887655443
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=85.72 E-value=5.7 Score=34.84 Aligned_cols=117 Identities=15% Similarity=0.169 Sum_probs=72.4
Q ss_pred hcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH----cC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEE
Q 015534 101 LKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK----AG-AAHVYAVECSQ-MANMAKQIVEANGFSNVIT 174 (405)
Q Consensus 101 l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~----~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~ 174 (405)
++.....-.|...|.+ .++..|+|+|.-.|..+++.|. .| ..+|+++|++- .++-+... . .+|.
T Consensus 52 ~k~p~D~~~yQellw~----~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~-p~i~ 121 (237)
T COG3510 52 IKSPSDMWNYQELLWE----LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----V-PDIL 121 (237)
T ss_pred cCCHHHHHHHHHHHHh----cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----C-CCeE
Confidence 3344444455555553 3567899999999987777765 34 24999999987 54333221 2 4599
Q ss_pred EEEcccccccC-------CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCc
Q 015534 175 VLKGKIEEIEL-------PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 175 ~~~~d~~~~~~-------~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
|+.++..+... ..+.--+.+|.-. -++-...-+-++....+|.-|-.++..+.
T Consensus 122 f~egss~dpai~eqi~~~~~~y~kIfvilDs---dHs~~hvLAel~~~~pllsaG~Y~vVeDs 181 (237)
T COG3510 122 FIEGSSTDPAIAEQIRRLKNEYPKIFVILDS---DHSMEHVLAELKLLAPLLSAGDYLVVEDS 181 (237)
T ss_pred EEeCCCCCHHHHHHHHHHhcCCCcEEEEecC---CchHHHHHHHHHHhhhHhhcCceEEEecc
Confidence 99999887541 2233344444222 22223444666777888888988876554
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=85.63 E-value=5.1 Score=43.00 Aligned_cols=98 Identities=16% Similarity=0.119 Sum_probs=65.3
Q ss_pred CEEEEEcCCC--cHHHHHHH-HcCCCeEEEEechH-HHHHHHHHHHHc-------C-CC--------CcEEEEEcccccc
Q 015534 124 KVVLDVGAGT--GILSLFCA-KAGAAHVYAVECSQ-MANMAKQIVEAN-------G-FS--------NVITVLKGKIEEI 183 (405)
Q Consensus 124 ~~VLDiGcG~--G~l~~~la-~~g~~~V~~vD~s~-~~~~a~~~~~~~-------~-~~--------~~i~~~~~d~~~~ 183 (405)
++|.-||+|+ ..++..++ ..|. .|+.+|.++ .++.+.+++... + +. .+|++. .|...+
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~ 387 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRGF 387 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHHh
Confidence 5899999998 35666666 6676 999999999 888876655331 1 11 234443 222222
Q ss_pred cCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCce
Q 015534 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
...|+|+=.. ......-..++..+.++++|+.+|.-++.+
T Consensus 388 ----~~aDlViEav----~E~~~~K~~v~~~le~~~~~~~ilasnTS~ 427 (708)
T PRK11154 388 ----KHADVVIEAV----FEDLALKQQMVAEVEQNCAPHTIFASNTSS 427 (708)
T ss_pred ----ccCCEEeecc----cccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 5689888432 333355578999999999999888755544
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=85.45 E-value=3.6 Score=44.30 Aligned_cols=98 Identities=12% Similarity=0.126 Sum_probs=66.1
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc-------C-CC--------CcEEEEEccccccc
Q 015534 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------G-FS--------NVITVLKGKIEEIE 184 (405)
Q Consensus 124 ~~VLDiGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-------~-~~--------~~i~~~~~d~~~~~ 184 (405)
.+|--||+|+ +.++..++..|. .|+.+|.++ .++.+.+++... + +. .++++. .|...+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 412 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSGF- 412 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHHh-
Confidence 5799999997 356677777877 999999999 988877665432 1 11 234333 233222
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCce
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
...|+|+=.. ......-..++..+.++++|+.+|.-++.+
T Consensus 413 ---~~aDlViEAv----~E~l~~K~~vf~~l~~~~~~~~ilasNTSs 452 (737)
T TIGR02441 413 ---KNADMVIEAV----FEDLSLKHKVIKEVEAVVPPHCIIASNTSA 452 (737)
T ss_pred ---ccCCeehhhc----cccHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 5788888322 333355678999999999999988755544
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=85.27 E-value=6.5 Score=32.89 Aligned_cols=81 Identities=25% Similarity=0.319 Sum_probs=44.7
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (405)
+..++.......++++|+-+|||. | .++..+++.|...|+.+|.++ ..+.+.+...... +.....+..+.
T Consensus 6 ~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~--- 78 (155)
T cd01065 6 FVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG----IAIAYLDLEEL--- 78 (155)
T ss_pred HHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc----cceeecchhhc---
Confidence 444455433335678999999974 1 333344445556899999988 5554433332211 11222233322
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
.+.+|+|++..
T Consensus 79 ~~~~Dvvi~~~ 89 (155)
T cd01065 79 LAEADLIINTT 89 (155)
T ss_pred cccCCEEEeCc
Confidence 26799999854
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=85.23 E-value=6 Score=38.09 Aligned_cols=96 Identities=25% Similarity=0.186 Sum_probs=57.3
Q ss_pred ccCCCCCCEEEEEcCCC--cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCc
Q 015534 117 NKFLFKDKVVLDVGAGT--GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTK 189 (405)
Q Consensus 117 ~~~~~~~~~VLDiGcG~--G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~ 189 (405)
.....++.+||-.|+.. |.++..+|+ .|+ .++++-.++ -.+.+++ .|-...+.+...|+.+-. .....
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~----lGAd~vi~y~~~~~~~~v~~~t~g~g 211 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKE----LGADHVINYREEDFVEQVRELTGGKG 211 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHcCCCC
Confidence 35567799999999544 588888888 666 666666655 4445544 343222333344332221 22247
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|+|+... + ...+....+.|+++|.++.
T Consensus 212 vDvv~D~v------G----~~~~~~~l~~l~~~G~lv~ 239 (326)
T COG0604 212 VDVVLDTV------G----GDTFAASLAALAPGGRLVS 239 (326)
T ss_pred ceEEEECC------C----HHHHHHHHHHhccCCEEEE
Confidence 99999632 1 1233445578899999874
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.19 E-value=4.9 Score=38.26 Aligned_cols=87 Identities=20% Similarity=0.170 Sum_probs=51.9
Q ss_pred CEEEEEcCCC-c-HHHHHHHHcCC-CeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 124 KVVLDVGAGT-G-ILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 124 ~~VLDiGcG~-G-~l~~~la~~g~-~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
.+|.-||+|. | .++..+.+.|. .+|+++|.++ .++.+++ .+.. .. ...+..+. ...+|+|+....
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~--~~-~~~~~~~~---~~~aDvViiavp- 75 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLG--DR-VTTSAAEA---VKGADLVILCVP- 75 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCC--ce-ecCCHHHH---hcCCCEEEECCC-
Confidence 5799999887 2 44555556664 4899999998 7766543 3321 11 11222221 146899987432
Q ss_pred ccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
......++..+...+++|+.++
T Consensus 76 -----~~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 76 -----VGASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred -----HHHHHHHHHHHHhhCCCCCEEE
Confidence 1233455666667788887654
|
|
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.11 E-value=6 Score=38.02 Aligned_cols=97 Identities=25% Similarity=0.286 Sum_probs=57.5
Q ss_pred ccCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcc-------cccccCC
Q 015534 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK-------IEEIELP 186 (405)
Q Consensus 117 ~~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d-------~~~~~~~ 186 (405)
.....++.+||-.|+|. |..+..+|+ .|+..|++++.++ ..+.+++. +....+.....+ +... ..
T Consensus 157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~~~~~-~~ 231 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GATHTVNVRTEDTPESAEKIAEL-LG 231 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCcEEeccccccchhHHHHHHHH-hC
Confidence 34567888999988765 666667777 6775599999888 77776552 321111111111 1111 23
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
...+|+|+... + . ...+....+.|+++|+++.
T Consensus 232 ~~~~d~vld~~-g----~----~~~~~~~~~~l~~~G~~v~ 263 (343)
T cd05285 232 GKGPDVVIECT-G----A----ESCIQTAIYATRPGGTVVL 263 (343)
T ss_pred CCCCCEEEECC-C----C----HHHHHHHHHHhhcCCEEEE
Confidence 35699998521 1 1 1134555678899999873
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=85.09 E-value=4.1 Score=39.12 Aligned_cols=97 Identities=20% Similarity=0.147 Sum_probs=57.7
Q ss_pred ccCCCCCCEEEEEcC--CCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEc-cccc-c-cCCCCc
Q 015534 117 NKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEE-I-ELPVTK 189 (405)
Q Consensus 117 ~~~~~~~~~VLDiGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~-~-~~~~~~ 189 (405)
.....+|.+||-.|+ |.|.++..+|+ .|+ +|++++.++ -.+.+++. .|....+..... +..+ + ......
T Consensus 146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~~g 221 (338)
T cd08295 146 VCKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYFPNG 221 (338)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhCCCC
Confidence 345678999999997 34677777777 666 799998888 77776652 233211111111 2111 1 011257
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|+|+-. ++ . ..+....+.|+++|.++.
T Consensus 222 vd~v~d~-~g-------~--~~~~~~~~~l~~~G~iv~ 249 (338)
T cd08295 222 IDIYFDN-VG-------G--KMLDAVLLNMNLHGRIAA 249 (338)
T ss_pred cEEEEEC-CC-------H--HHHHHHHHHhccCcEEEE
Confidence 9999852 11 1 234455688999999873
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.95 E-value=11 Score=33.71 Aligned_cols=72 Identities=21% Similarity=0.309 Sum_probs=46.2
Q ss_pred CCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CC-----C
Q 015534 122 KDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LP-----V 187 (405)
Q Consensus 122 ~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~ 187 (405)
++++||-.|++.| .++..+++.|+ +|++++.++ -...+.+..... .++.++.+|+.+.. +. -
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4679999998754 33444455677 899999988 665554444332 24788888887532 00 1
Q ss_pred CceeEEEEcc
Q 015534 188 TKVDIIISEW 197 (405)
Q Consensus 188 ~~~D~Iv~~~ 197 (405)
+.+|.++...
T Consensus 80 ~~id~ii~~a 89 (238)
T PRK05786 80 NAIDGLVVTV 89 (238)
T ss_pred CCCCEEEEcC
Confidence 3578888754
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.91 E-value=4 Score=38.88 Aligned_cols=93 Identities=13% Similarity=0.070 Sum_probs=55.2
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCC----CcEEEEEcccccccCCCCceeEEEEc
Q 015534 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS----NVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 124 ~~VLDiGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~----~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
.+|+-+|+|. |.++..|++.|. .|+.++-++ .++..++. .|+. .....+...... +.+.+.+|+|+..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~~~~~~~~~~-~~~~~~~D~viv~ 77 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQA---GGLTLVEQGQASLYAIPAET-ADAAEPIHRLLLA 77 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhc---CCeEEeeCCcceeeccCCCC-cccccccCEEEEE
Confidence 4799999997 477888888876 899999876 55544331 2220 000011100000 1112579998862
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
. -......++..+...+.++..+++
T Consensus 78 v------K~~~~~~al~~l~~~l~~~t~vv~ 102 (305)
T PRK05708 78 C------KAYDAEPAVASLAHRLAPGAELLL 102 (305)
T ss_pred C------CHHhHHHHHHHHHhhCCCCCEEEE
Confidence 1 112456677778888889887765
|
|
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=84.89 E-value=2.1 Score=41.29 Aligned_cols=97 Identities=22% Similarity=0.260 Sum_probs=55.9
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc-c--cCCCCcee
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I--ELPVTKVD 191 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~--~~~~~~~D 191 (405)
....++.+||-.|+|. |.++..+++ .|+.+|++++.++ ..+.+++. |....+.....+..+ + ..+.+.+|
T Consensus 168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~l~~~~~~~~~d 243 (351)
T cd08233 168 SGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----GATIVLDPTEVDVVAEVRKLTGGGGVD 243 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEECCCccCHHHHHHHHhCCCCCC
Confidence 4456788999998653 455555666 5666899999888 77777542 321111111111111 1 01224599
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|+-.. + . ...+....+.|+++|.++.
T Consensus 244 ~vid~~-g----~----~~~~~~~~~~l~~~G~~v~ 270 (351)
T cd08233 244 VSFDCA-G----V----QATLDTAIDALRPRGTAVN 270 (351)
T ss_pred EEEECC-C----C----HHHHHHHHHhccCCCEEEE
Confidence 998521 1 1 1234555678999998874
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=84.75 E-value=2.7 Score=34.19 Aligned_cols=62 Identities=19% Similarity=0.237 Sum_probs=36.2
Q ss_pred CCCEEEEEcCCCc-HHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCC-CCceeEEEE
Q 015534 122 KDKVVLDVGAGTG-ILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIIS 195 (405)
Q Consensus 122 ~~~~VLDiGcG~G-~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~ 195 (405)
...+|+|||-|.= ..+..|.+.|. .|+++|+.+. .+. .| +.++..|+.+-.+. -...|+|.+
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~------~a~-~g----~~~v~DDif~P~l~iY~~a~lIYS 76 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR------KAP-EG----VNFVVDDIFNPNLEIYEGADLIYS 76 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S-----------S----TTEE---SSS--HHHHTTEEEEEE
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc------ccc-cC----cceeeecccCCCHHHhcCCcEEEE
Confidence 3349999999985 55777777885 9999999982 111 22 67888888764322 257999998
|
; PDB: 2K4M_A. |
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.61 E-value=7 Score=37.18 Aligned_cols=96 Identities=19% Similarity=0.236 Sum_probs=55.2
Q ss_pred CEEEEEcCCCc--HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc-CC----------CCcEEEEEcccccccCCCCc
Q 015534 124 KVVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-GF----------SNVITVLKGKIEEIELPVTK 189 (405)
Q Consensus 124 ~~VLDiGcG~G--~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-~~----------~~~i~~~~~d~~~~~~~~~~ 189 (405)
++|.-||+|.- .++..+++.|. +|+.+|.++ .++.+++.+... +. ..++++ ..|..+. ...
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~---~~~ 79 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAA---VSG 79 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHH---hcc
Confidence 46888999963 55666666766 899999999 877776542211 10 011222 1222221 146
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.|+|+.... ........++..+..+++++.+++-.
T Consensus 80 aDlVi~av~----~~~~~~~~v~~~l~~~~~~~~ii~s~ 114 (311)
T PRK06130 80 ADLVIEAVP----EKLELKRDVFARLDGLCDPDTIFATN 114 (311)
T ss_pred CCEEEEecc----CcHHHHHHHHHHHHHhCCCCcEEEEC
Confidence 899986321 11123456777777777776655433
|
|
| >cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=84.39 E-value=6.9 Score=38.03 Aligned_cols=93 Identities=19% Similarity=0.168 Sum_probs=54.8
Q ss_pred CCCCCCEEEEEcCC-CcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc------cCCCCc
Q 015534 119 FLFKDKVVLDVGAG-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI------ELPVTK 189 (405)
Q Consensus 119 ~~~~~~~VLDiGcG-~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~~ 189 (405)
...++.+||-.|+| .|.++..+++ .|+..|++++.++ ..+.+++ .+. ..++..+-..+ ..+...
T Consensus 184 ~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~----~g~---~~v~~~~~~~~~~~l~~~~~~~~ 256 (367)
T cd08263 184 DVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE----LGA---THTVNAAKEDAVAAIREITGGRG 256 (367)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCC---ceEecCCcccHHHHHHHHhCCCC
Confidence 34677888887765 3555566666 6775699999888 7776644 232 12332221111 122356
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|+|+...- . . ..+....++|+++|.++-
T Consensus 257 ~d~vld~vg-----~-~---~~~~~~~~~l~~~G~~v~ 285 (367)
T cd08263 257 VDVVVEALG-----K-P---ETFKLALDVVRDGGRAVV 285 (367)
T ss_pred CCEEEEeCC-----C-H---HHHHHHHHHHhcCCEEEE
Confidence 999985321 1 1 134555688999999873
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu |
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=84.29 E-value=9.5 Score=36.19 Aligned_cols=123 Identities=15% Similarity=0.159 Sum_probs=80.6
Q ss_pred HhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCC--CCcEEEEEccccc
Q 015534 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGF--SNVITVLKGKIEE 182 (405)
Q Consensus 105 ~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~--~~~i~~~~~d~~~ 182 (405)
.|...+-+.+....... -..|+-||||-=.=+..+-.....+|+-+|.-++++.=++.+...+. +...+++..|+.+
T Consensus 76 ~Rtr~fD~~~~~~~~~g-~~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~ 154 (297)
T COG3315 76 ARTRYFDDFVRAALDAG-IRQVVILGAGLDTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLRE 154 (297)
T ss_pred HHHHHHHHHHHHHHHhc-ccEEEEeccccccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccc
Confidence 34544444444433323 46899999986433322222112478888887777777777777663 3468999999984
Q ss_pred cc---------CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 183 IE---------LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 183 ~~---------~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
-. +.....-+++++.+..++ .+.....++..+...+.||-.++...
T Consensus 155 ~dw~~~L~~~G~d~~~pt~~iaEGLl~YL-~~~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 155 DDWPQALAAAGFDRSRPTLWIAEGLLMYL-PEEAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred cchHHHHHhcCCCcCCCeEEEeccccccC-CHHHHHHHHHHHHHhCCCCceEEEec
Confidence 32 123556688888876666 45677899999999888888777543
|
|
| >cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=84.04 E-value=2.5 Score=41.53 Aligned_cols=97 Identities=27% Similarity=0.249 Sum_probs=55.5
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEc---cc----ccccCCC
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG---KI----EEIELPV 187 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~---d~----~~~~~~~ 187 (405)
....++.+||-.|+|. |..+..+|+ .|+.+|++++.++ -.+.+++ .|....+..... +. ..+ .+.
T Consensus 199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~-~~g 273 (384)
T cd08265 199 GGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEV-TKG 273 (384)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHh-cCC
Confidence 3566788999888754 455555666 6766899999888 6665554 343211111100 11 111 223
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
..+|+|+.. .+ .....+....+.|+++|+++-
T Consensus 274 ~gvDvvld~-~g-------~~~~~~~~~~~~l~~~G~~v~ 305 (384)
T cd08265 274 WGADIQVEA-AG-------APPATIPQMEKSIAINGKIVY 305 (384)
T ss_pred CCCCEEEEC-CC-------CcHHHHHHHHHHHHcCCEEEE
Confidence 569999852 11 112334455678899999873
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=83.85 E-value=5.9 Score=36.61 Aligned_cols=92 Identities=24% Similarity=0.235 Sum_probs=55.5
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 194 (405)
....++.+||-.|+|. |..+..+|+ .|..+|++++.++ ..+.+++. |..+.+ +... ... .....+|+|+
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~~~--~~~~-~~~-~~~~~~d~vl 164 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPADPV--AADT-ADE-IGGRGADVVI 164 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCccc--cccc-hhh-hcCCCCCEEE
Confidence 4567788999998865 666666677 5664599999988 77766653 211111 1110 011 1235699998
Q ss_pred EccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
.... . ...+....+.|+++|.++
T Consensus 165 ~~~~-----~----~~~~~~~~~~l~~~g~~~ 187 (277)
T cd08255 165 EASG-----S----PSALETALRLLRDRGRVV 187 (277)
T ss_pred EccC-----C----hHHHHHHHHHhcCCcEEE
Confidence 5211 1 123445567889999987
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=83.83 E-value=13 Score=35.00 Aligned_cols=98 Identities=22% Similarity=0.307 Sum_probs=59.1
Q ss_pred CEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHH-------HcCCC---------CcEEEEEccccccc
Q 015534 124 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVE-------ANGFS---------NVITVLKGKIEEIE 184 (405)
Q Consensus 124 ~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~-------~~~~~---------~~i~~~~~d~~~~~ 184 (405)
++|.-||+|. | .++..++..|. .|+.+|.++ .++.+++.+. ..+.- .++.+ ..+.+.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~- 81 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC-TTNLEEL- 81 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe-eCCHHHh-
Confidence 4688899996 3 55666667775 999999999 8776655432 22210 11222 2232222
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCce
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
...|+|+... .........++..+...++|+.+++-...+
T Consensus 82 ---~~aD~Vieav----~e~~~~k~~v~~~l~~~~~~~~il~s~tS~ 121 (295)
T PLN02545 82 ---RDADFIIEAI----VESEDLKKKLFSELDRICKPSAILASNTSS 121 (295)
T ss_pred ---CCCCEEEEcC----ccCHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 5689998632 222344566777788888888877644433
|
|
| >cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=83.53 E-value=2.9 Score=40.79 Aligned_cols=96 Identities=22% Similarity=0.240 Sum_probs=55.8
Q ss_pred ccCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEc--cc----ccccCCC
Q 015534 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG--KI----EEIELPV 187 (405)
Q Consensus 117 ~~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~--d~----~~~~~~~ 187 (405)
.....++.+||-.|+|. |.++..+|+ .|+..|++++.++ -.+.+++. |....+..... +. ..+ .+
T Consensus 178 ~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~~~l~~~-~~- 251 (365)
T cd05279 178 TAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQL----GATECINPRDQDKPIVEVLTEM-TD- 251 (365)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCCeecccccccchHHHHHHHH-hC-
Confidence 34567788999988754 455555666 6776799999888 77776542 32111111111 11 111 23
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhccc-CCcEEEe
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLV-DDGIVLP 227 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~lip 227 (405)
+.+|+|+.. .+ . ...+....+.|+ ++|.++.
T Consensus 252 ~~~d~vid~-~g-------~-~~~~~~~~~~l~~~~G~~v~ 283 (365)
T cd05279 252 GGVDYAFEV-IG-------S-ADTLKQALDATRLGGGTSVV 283 (365)
T ss_pred CCCcEEEEC-CC-------C-HHHHHHHHHHhccCCCEEEE
Confidence 569999852 11 1 123444557788 9999874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=83.42 E-value=9.1 Score=36.27 Aligned_cols=93 Identities=23% Similarity=0.130 Sum_probs=57.5
Q ss_pred ccCCCCCCEEEEEcC--CCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc-----cCCC
Q 015534 117 NKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-----ELPV 187 (405)
Q Consensus 117 ~~~~~~~~~VLDiGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~ 187 (405)
.....+|.+||-.|+ |.|..+..+|+ .|+ +|++++.++ -.+.+++ .|.. .++...-.++ ....
T Consensus 138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~----~Ga~---~vi~~~~~~~~~~v~~~~~ 209 (329)
T cd08294 138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE----LGFD---AVFNYKTVSLEEALKEAAP 209 (329)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC---EEEeCCCccHHHHHHHHCC
Confidence 345678899999984 44677777788 566 799999888 7777655 3432 2222211111 0112
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+.+|+|+... + . ..+....+.|+++|.++.
T Consensus 210 ~gvd~vld~~-g-------~--~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 210 DGIDCYFDNV-G-------G--EFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred CCcEEEEECC-C-------H--HHHHHHHHhhccCCEEEE
Confidence 5699998521 1 1 234555688999999873
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.35 E-value=3.3 Score=40.42 Aligned_cols=45 Identities=22% Similarity=0.288 Sum_probs=35.7
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHH
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQ 162 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~ 162 (405)
....++.+||-.|+|. |.++..+|+ .|+.+|+++|.++ -.+.|++
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 4567889999999875 666777777 6776899999999 8887755
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=83.33 E-value=3.5 Score=39.95 Aligned_cols=75 Identities=28% Similarity=0.279 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH----------------------HHHHHHHHHHHcCCCCcEEEEE
Q 015534 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ----------------------MANMAKQIVEANGFSNVITVLK 177 (405)
Q Consensus 122 ~~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~----------------------~~~~a~~~~~~~~~~~~i~~~~ 177 (405)
.+.+||-||||. | .++..|++.|..+++.+|.+. -++.|++.+.+..-.-+++.+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~ 102 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVV 102 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEe
Confidence 457899999995 4 567788889999999999862 2344455555544333456666
Q ss_pred cccccccC--CCCceeEEEEc
Q 015534 178 GKIEEIEL--PVTKVDIIISE 196 (405)
Q Consensus 178 ~d~~~~~~--~~~~~D~Iv~~ 196 (405)
.++....+ --..+|+|+..
T Consensus 103 ~~~~~~~~~~~~~~~DlVid~ 123 (338)
T PRK12475 103 TDVTVEELEELVKEVDLIIDA 123 (338)
T ss_pred ccCCHHHHHHHhcCCCEEEEc
Confidence 55532111 12569999973
|
|
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.32 E-value=6.7 Score=38.11 Aligned_cols=93 Identities=20% Similarity=0.130 Sum_probs=51.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 120 ~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
..++.+||-.|+|. |.++..+|+ .|+ +|++++.++ ....+.+ ..|.. ..+...+...+......+|+|+-.
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~---~~Ga~--~~i~~~~~~~~~~~~~~~D~vid~ 251 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALE---HLGAD--DYLVSSDAAEMQEAADSLDYIIDT 251 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH---hcCCc--EEecCCChHHHHHhcCCCcEEEEC
Confidence 35788999888765 566667777 566 788888776 5444432 23431 111111111111011358888842
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
. + . ...+....+.|+++|+++.
T Consensus 252 ~-g----~----~~~~~~~~~~l~~~G~iv~ 273 (357)
T PLN02514 252 V-P----V----FHPLEPYLSLLKLDGKLIL 273 (357)
T ss_pred C-C----c----hHHHHHHHHHhccCCEEEE
Confidence 1 1 1 1234445578899998874
|
|
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=83.11 E-value=2.8 Score=40.23 Aligned_cols=94 Identities=22% Similarity=0.262 Sum_probs=55.9
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcc---ccccc--CCCCc
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK---IEEIE--LPVTK 189 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d---~~~~~--~~~~~ 189 (405)
....++.+||..|+|. |..+..+|+ .|...|++++.++ ..+.+++ .+.. .++..+ ...+. .+...
T Consensus 155 ~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~~---~~~~~~~~~~~~~~~~~~~~~ 227 (343)
T cd08236 155 AGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGAD---DTINPKEEDVEKVRELTEGRG 227 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC---EEecCccccHHHHHHHhCCCC
Confidence 4456788999998765 666666677 6665599999888 7766643 2321 222211 11111 22245
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|+++... +. ...+....+.|+++|.++.
T Consensus 228 ~d~vld~~------g~---~~~~~~~~~~l~~~G~~v~ 256 (343)
T cd08236 228 ADLVIEAA------GS---PATIEQALALARPGGKVVL 256 (343)
T ss_pred CCEEEECC------CC---HHHHHHHHHHhhcCCEEEE
Confidence 99998531 11 1234555688899999773
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase | Back alignment and domain information |
|---|
Probab=83.01 E-value=12 Score=36.03 Aligned_cols=92 Identities=25% Similarity=0.298 Sum_probs=54.6
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc----cc-CCCCcee
Q 015534 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE----IE-LPVTKVD 191 (405)
Q Consensus 120 ~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~----~~-~~~~~~D 191 (405)
..++.+||-.|+|. |..+..+|+ .|+++|++++.++ ..+.+++ .|.. .++..+-.. +. ...+.+|
T Consensus 173 ~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~~d 245 (350)
T cd08240 173 LVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA----AGAD---VVVNGSDPDAAKRIIKAAGGGVD 245 (350)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc---EEecCCCccHHHHHHHHhCCCCc
Confidence 34678899988754 566666666 6777899999888 7777643 2331 222221111 11 1113689
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+++... + . ...+....+.|+++|.++-
T Consensus 246 ~vid~~-g----~----~~~~~~~~~~l~~~g~~v~ 272 (350)
T cd08240 246 AVIDFV-N----N----SATASLAFDILAKGGKLVL 272 (350)
T ss_pred EEEECC-C----C----HHHHHHHHHHhhcCCeEEE
Confidence 998521 1 1 1234555688899998873
|
6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy |
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=82.98 E-value=7.4 Score=41.69 Aligned_cols=98 Identities=19% Similarity=0.105 Sum_probs=63.4
Q ss_pred CEEEEEcCCCc--HHHHHHH-HcCCCeEEEEechH-HHHHHHHHHHH-------cC-C--------CCcEEEEEcccccc
Q 015534 124 KVVLDVGAGTG--ILSLFCA-KAGAAHVYAVECSQ-MANMAKQIVEA-------NG-F--------SNVITVLKGKIEEI 183 (405)
Q Consensus 124 ~~VLDiGcG~G--~l~~~la-~~g~~~V~~vD~s~-~~~~a~~~~~~-------~~-~--------~~~i~~~~~d~~~~ 183 (405)
++|.-||+|+= .++..++ ..|. .|+.+|.++ .++.+.+++.. .+ + ..+|++. .|...+
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~ 382 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGI-PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-TDYRGF 382 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-CChHHh
Confidence 47999999983 4445555 4676 999999999 88887665432 11 1 1234433 233222
Q ss_pred cCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCce
Q 015534 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
...|+|+=.. ......-..++..+.++++|+.+|.-++.+
T Consensus 383 ----~~adlViEav----~E~l~~K~~v~~~l~~~~~~~~ilasnTS~ 422 (699)
T TIGR02440 383 ----KDVDIVIEAV----FEDLALKHQMVKDIEQECAAHTIFASNTSS 422 (699)
T ss_pred ----ccCCEEEEec----cccHHHHHHHHHHHHhhCCCCcEEEeCCCC
Confidence 5789888432 223345568899999999999887655443
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=82.44 E-value=9.2 Score=36.26 Aligned_cols=87 Identities=17% Similarity=0.182 Sum_probs=50.2
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHH-HcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 120 LFKDKVVLDVGAGT-GILSLFCA-KAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 120 ~~~~~~VLDiGcG~-G~l~~~la-~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
...+++|+-||+|. |......+ ..|+ +|+.+|.++ ..+.++. .+ .+++. ..++..--..+|+|+..
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~----~G----~~~~~--~~~l~~~l~~aDiVI~t 217 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITE----MG----LSPFH--LSELAEEVGKIDIIFNT 217 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----cC----Ceeec--HHHHHHHhCCCCEEEEC
Confidence 34689999999986 33333333 3676 999999998 6555432 33 22221 11111111579999974
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
.. . . .+-......++||+.++
T Consensus 218 ~p-~-----~---~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 218 IP-A-----L---VLTKEVLSKMPPEALII 238 (296)
T ss_pred CC-h-----h---hhhHHHHHcCCCCcEEE
Confidence 21 1 1 12234456788988877
|
|
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=82.26 E-value=3 Score=35.13 Aligned_cols=53 Identities=21% Similarity=0.189 Sum_probs=31.2
Q ss_pred EEcCCCc--HHHHHHH--Hc-CCCeEEEEechH-HHHHHHHH--HHHcCCCCcEEEEEccc
Q 015534 128 DVGAGTG--ILSLFCA--KA-GAAHVYAVECSQ-MANMAKQI--VEANGFSNVITVLKGKI 180 (405)
Q Consensus 128 DiGcG~G--~l~~~la--~~-g~~~V~~vD~s~-~~~~a~~~--~~~~~~~~~i~~~~~d~ 180 (405)
|||++.| .....++ .. +..+|+++|+++ .++..+++ +..+.....+++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 4444443 33 356899999999 99999988 66664433355555443
|
; PDB: 2PY6_A. |
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=81.67 E-value=10 Score=35.79 Aligned_cols=90 Identities=17% Similarity=0.109 Sum_probs=54.0
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 194 (405)
....++.+||-.|+|. |..+..+++ .|+ +|++++.++ ..+.+++ .|... +... ... ...+.+|+++
T Consensus 151 ~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~----~g~~~-~~~~----~~~-~~~~~~d~vi 219 (319)
T cd08242 151 VPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARR----LGVET-VLPD----EAE-SEGGGFDVVV 219 (319)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH----cCCcE-EeCc----ccc-ccCCCCCEEE
Confidence 4566788999998653 444455555 566 699999988 8887765 34321 1111 111 2335799998
Q ss_pred EccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
... .. ...+....+.|+++|.++.
T Consensus 220 d~~-----g~----~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 220 EAT-----GS----PSGLELALRLVRPRGTVVL 243 (319)
T ss_pred ECC-----CC----hHHHHHHHHHhhcCCEEEE
Confidence 521 11 1233444577899998873
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.44 E-value=8 Score=35.40 Aligned_cols=76 Identities=17% Similarity=0.266 Sum_probs=51.2
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (405)
..+++||-.|++.| .++..+++.|+ +|+.++.++ .++...+.+...+...++.++..|+.+... .
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 35678999998776 34555666777 899999988 666665555542223458888888866420 1
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
.+.+|++|.+.
T Consensus 84 ~g~id~li~~a 94 (260)
T PRK07063 84 FGPLDVLVNNA 94 (260)
T ss_pred hCCCcEEEECC
Confidence 25789999753
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=81.42 E-value=2.4 Score=42.30 Aligned_cols=91 Identities=22% Similarity=0.294 Sum_probs=51.7
Q ss_pred CCCCCEEEEEcCCC-cHH-HHHHHHcCCCeEE------EEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015534 120 LFKDKVVLDVGAGT-GIL-SLFCAKAGAAHVY------AVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (405)
Q Consensus 120 ~~~~~~VLDiGcG~-G~l-~~~la~~g~~~V~------~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (405)
...+++|+-||||+ |.. +.-+...|. +|+ ++|... ..+.| ...|+. ..+..+. -...
T Consensus 33 ~LkgKtIaIIGyGSqG~AqAlNLrdSGv-nVvvglr~~~id~~~~s~~kA----~~dGF~------v~~~~Ea---~~~A 98 (487)
T PRK05225 33 YLKGKKIVIVGCGAQGLNQGLNMRDSGL-DISYALRKEAIAEKRASWRKA----TENGFK------VGTYEEL---IPQA 98 (487)
T ss_pred HhCCCEEEEEccCHHHHHHhCCCccccc-eeEEeccccccccccchHHHH----HhcCCc------cCCHHHH---HHhC
Confidence 35789999999998 331 111111244 333 334334 44333 334542 1344433 2689
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCc
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
|+|+.-.. .+ ....+...+...||||..|.++..
T Consensus 99 DvVviLlP-----Dt-~q~~v~~~i~p~LK~Ga~L~fsHG 132 (487)
T PRK05225 99 DLVINLTP-----DK-QHSDVVRAVQPLMKQGAALGYSHG 132 (487)
T ss_pred CEEEEcCC-----hH-HHHHHHHHHHhhCCCCCEEEecCC
Confidence 99997432 22 244556888899999998886543
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=80.82 E-value=6.2 Score=39.87 Aligned_cols=85 Identities=22% Similarity=0.318 Sum_probs=51.2
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 120 ~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
...|++|+-+|+|. |......++ .|+ +|+.+|.++ ....|.. .| +++. ++.++. ..+|+|++.
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a~~A~~----~G----~~~~--~leell---~~ADIVI~a 316 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICALQAAM----EG----YQVV--TLEDVV---ETADIFVTA 316 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHh----cC----ceec--cHHHHH---hcCCEEEEC
Confidence 46789999999997 433333333 566 899999888 5433322 23 2222 333332 578999974
Q ss_pred cccccccChhhHHHHH-HHHHhcccCCcEEEe
Q 015534 197 WMGYFLLFENMLNTVL-YARDKWLVDDGIVLP 227 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l-~~~~~~LkpgG~lip 227 (405)
. + . ..++ ......+|||++++-
T Consensus 317 t-G-------t-~~iI~~e~~~~MKpGAiLIN 339 (476)
T PTZ00075 317 T-G-------N-KDIITLEHMRRMKNNAIVGN 339 (476)
T ss_pred C-C-------c-ccccCHHHHhccCCCcEEEE
Confidence 2 1 1 1122 245578899999884
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=80.73 E-value=5 Score=38.89 Aligned_cols=74 Identities=31% Similarity=0.372 Sum_probs=46.6
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH----------------------HHHHHHHHHHHcCCCCcEEEEE
Q 015534 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ----------------------MANMAKQIVEANGFSNVITVLK 177 (405)
Q Consensus 122 ~~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~----------------------~~~~a~~~~~~~~~~~~i~~~~ 177 (405)
...+||-+|||. | .++..|++.|..+++.+|.+. -++.|++.+.+.+-.-+++.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~ 102 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIV 102 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence 456899999995 4 567788889999999999751 2233444444433222355555
Q ss_pred ccccccc---CCCCceeEEEEc
Q 015534 178 GKIEEIE---LPVTKVDIIISE 196 (405)
Q Consensus 178 ~d~~~~~---~~~~~~D~Iv~~ 196 (405)
.++.... + -..+|+|+..
T Consensus 103 ~~~~~~~~~~~-~~~~DlVid~ 123 (339)
T PRK07688 103 QDVTAEELEEL-VTGVDLIIDA 123 (339)
T ss_pred ccCCHHHHHHH-HcCCCEEEEc
Confidence 5543211 1 2569999973
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.72 E-value=5.7 Score=39.08 Aligned_cols=69 Identities=17% Similarity=0.328 Sum_probs=47.2
Q ss_pred CEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC---CCceeEEEEcc
Q 015534 124 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDIIISEW 197 (405)
Q Consensus 124 ~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~Iv~~~ 197 (405)
.+||-||||. | ..+..+|+.+..+|+..|-|. .++.+..... .+++.+..|+.+.+-- -..+|+|++-.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 4799999975 4 334455667767999999998 6666554432 2588888888776310 14569999754
|
|
| >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=80.40 E-value=4.5 Score=38.88 Aligned_cols=96 Identities=20% Similarity=0.277 Sum_probs=54.9
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccc----ccccCCCCce
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI----EEIELPVTKV 190 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~----~~~~~~~~~~ 190 (405)
....++.+||-.|+|. |..+..+++ .|..+|++++.++ ....+++ .+...-+.....+. ..+ .+...+
T Consensus 162 ~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~-~~~~~~ 236 (345)
T cd08286 162 GKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLEL-TDGRGV 236 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHH-hCCCCC
Confidence 3456788888887643 344555566 5656899999888 7666654 23311122111111 111 223569
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+|+... .. ...+..+.+.|+++|.++-
T Consensus 237 d~vld~~--------g~-~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 237 DVVIEAV--------GI-PATFELCQELVAPGGHIAN 264 (345)
T ss_pred CEEEECC--------CC-HHHHHHHHHhccCCcEEEE
Confidence 9998532 11 1235556688999999873
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=80.36 E-value=18 Score=32.04 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=27.7
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEech
Q 015534 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS 154 (405)
Q Consensus 122 ~~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s 154 (405)
...+|+-+|||. | ..+..+++.|..+++.+|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 456899999996 3 66788888999899999988
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=80.33 E-value=11 Score=37.01 Aligned_cols=92 Identities=18% Similarity=0.226 Sum_probs=62.1
Q ss_pred EEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCc-EEEEEcccccccCCCCceeEEEEccccccc
Q 015534 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNV-ITVLKGKIEEIELPVTKVDIIISEWMGYFL 202 (405)
Q Consensus 125 ~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l 202 (405)
.||-|+-.-|.++..++..+. +.+--|- .-...++++..|+++.. ++++.. .+ +++ +.+|+|+.-+ .
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~---~~~~ds~~~~~~~~~n~~~n~~~~~~~~~~~~--~~-~~~-~~~d~vl~~~----P 115 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKP---YSIGDSYISELATRENLRLNGIDESSVKFLDS--TA-DYP-QQPGVVLIKV----P 115 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCC---CeeehHHHHHHHHHHHHHHcCCCcccceeecc--cc-ccc-CCCCEEEEEe----C
Confidence 799999999999999997544 2331122 44455788999998643 444422 21 234 6699998643 2
Q ss_pred cChhhHHHHHHHHHhcccCCcEEEe
Q 015534 203 LFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 203 ~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
-.-..+...+..+...|.||+.+|.
T Consensus 116 K~~~~l~~~l~~l~~~l~~~~~ii~ 140 (378)
T PRK15001 116 KTLALLEQQLRALRKVVTSDTRIIA 140 (378)
T ss_pred CCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 2334566778888899999999773
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 405 | ||||
| 1ori_A | 343 | Structure Of The Predominant Protein Arginine Methy | 1e-118 | ||
| 1or8_A | 340 | Structure Of The Predominant Protein Arginine Methy | 1e-118 | ||
| 1orh_A | 353 | Structure Of The Predominant Protein Arginine Methy | 1e-118 | ||
| 3q7e_A | 349 | Crystal Structure Of Rat Protein Arginine Methyltra | 1e-118 | ||
| 1g6q_1 | 328 | Crystal Structure Of Yeast Arginine Methyltransfera | 3e-96 | ||
| 2fyt_A | 340 | Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerev | 9e-85 | ||
| 1f3l_A | 321 | Crystal Structure Of The Conserved Core Of Protein | 1e-84 | ||
| 4hc4_A | 376 | Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 ( | 3e-61 | ||
| 3b3j_A | 480 | The 2.55 A Crystal Structure Of The Apo Catalytic D | 3e-48 | ||
| 2y1w_A | 348 | Crystal Structure Of Coactivator Associated Arginin | 3e-48 | ||
| 3b3f_A | 341 | The 2.2 A Crystal Structure Of The Catalytic Domain | 6e-48 | ||
| 4ikp_A | 341 | Crystal Structure Of Coactivator-associated Arginin | 7e-48 | ||
| 2v74_B | 346 | Crystal Structure Of Coactivator-Associated Arginin | 4e-47 | ||
| 3r0q_C | 376 | A Uniquely Open Conformation Revealed In The Crysta | 4e-46 | ||
| 4g56_A | 657 | Crystal Structure Of Full Length Prmt5/mep50 Comple | 2e-05 | ||
| 4gqb_A | 637 | Crystal Structure Of The Human Prmt5:mep50 Complex | 3e-05 |
| >pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 343 | Back alignment and structure |
|
| >pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 340 | Back alignment and structure |
|
| >pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 353 | Back alignment and structure |
|
| >pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine Methyltransferase 1 (Prmt1) M48l Mutant Length = 349 | Back alignment and structure |
|
| >pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase, Hmt1 Length = 328 | Back alignment and structure |
|
| >pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae) Protein Length = 340 | Back alignment and structure |
|
| >pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein Arginine Methyltransferase Prmt3 Length = 321 | Back alignment and structure |
|
| >pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S. Cerevisiae) Length = 376 | Back alignment and structure |
|
| >pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain Of Coactivator-Associated Arginine Methyl Transferase I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered) Length = 480 | Back alignment and structure |
|
| >pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine Methyltransferase 1 (Carm1) In Complex With Sinefungin And Indole Inhibitor Length = 348 | Back alignment and structure |
|
| >pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of Coactivator- Associated Arginine Methyl Transferase I(Carm1,142-478), In Complex With S-Adenosyl Homocysteine Length = 341 | Back alignment and structure |
|
| >pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine Methyltransferase 1 Length = 341 | Back alignment and structure |
|
| >pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine Methyltransferase 1 (Carm1), In Complex With S-Adenosyl- Homocysteine Length = 346 | Back alignment and structure |
|
| >pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal Structure Of Arabidopsis Thaliana Protein Arginine Methyltransferase 10 Length = 376 | Back alignment and structure |
|
| >pdb|4G56|A Chain A, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 657 | Back alignment and structure |
|
| >pdb|4GQB|A Chain A, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 637 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 405 | |||
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 1e-149 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 1e-140 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 1e-138 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 1e-130 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 1e-128 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 1e-117 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 1e-56 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 7e-37 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 6e-24 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 3e-17 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 6e-15 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 2e-13 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 2e-12 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 6e-12 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 1e-11 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 5e-11 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 4e-10 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 1e-09 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 2e-09 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 1e-08 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 1e-08 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 1e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-05 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 2e-08 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 9e-08 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 9e-08 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 1e-07 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 1e-07 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 2e-07 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 2e-07 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 3e-07 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 4e-07 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 4e-07 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 5e-07 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 5e-07 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 7e-07 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 8e-07 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 8e-07 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 1e-06 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 1e-06 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 1e-06 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 1e-06 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 1e-06 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 2e-06 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 2e-06 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 3e-06 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 3e-06 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 3e-06 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 3e-06 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 4e-06 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 4e-06 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 5e-06 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 5e-06 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 6e-06 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 6e-06 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 6e-06 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 7e-06 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 7e-06 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 8e-06 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 8e-06 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 9e-06 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 1e-05 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 1e-05 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 1e-05 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 1e-05 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 1e-05 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 1e-05 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 2e-05 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 2e-05 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 2e-05 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 2e-05 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 2e-05 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 2e-05 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 2e-05 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 3e-05 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 3e-05 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 4e-05 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 5e-05 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 7e-05 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 7e-05 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 7e-05 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 7e-05 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 1e-04 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 2e-04 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 2e-04 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 2e-04 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 2e-04 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 2e-04 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 3e-04 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 3e-04 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 3e-04 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 4e-04 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 4e-04 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 4e-04 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 5e-04 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 5e-04 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 5e-04 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 6e-04 |
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* Length = 349 | Back alignment and structure |
|---|
Score = 424 bits (1092), Expect = e-149
Identities = 197/337 (58%), Positives = 254/337 (75%)
Query: 69 DADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLD 128
A+ S +D TS DYYFDSY+HFGIHEE+LKD VRT +Y+N ++ N+ LFKDKVVLD
Sbjct: 13 QAESSEKPNAEDMTSKDYYFDSYAHFGIHEELLKDEVRTLTYRNSMFHNRHLFKDKVVLD 72
Query: 129 VGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188
VG+GTGIL +F AKAGA V +ECS +++ A +IV+AN +V+T++KGK+EE+ELPV
Sbjct: 73 VGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVE 132
Query: 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIE 248
KVDIIISEWMGY L +E+MLNTVL+ARDKWL DG++ PD+A+LY+TAIED +YKD KI
Sbjct: 133 KVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIH 192
Query: 249 FWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLV 308
+W NVYGFDMSCIK A+ EPLVD VD Q+VTN L+K +DI + D +FT+PF L
Sbjct: 193 WWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQ 252
Query: 309 AQRNDYIHALVAYFDVTFTKCHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGS 368
+RNDY+HALVAYF++ FT+CHK GFST P+S THWKQTV Y+ED LT+ GE I G+
Sbjct: 253 VKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTGEEIFGT 312
Query: 369 LTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 405
+ + PN KN RD+D + +G+ +S Y+MR
Sbjct: 313 IGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRMR 349
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 Length = 328 | Back alignment and structure |
|---|
Score = 402 bits (1033), Expect = e-140
Identities = 166/327 (50%), Positives = 225/327 (68%), Gaps = 7/327 (2%)
Query: 85 DYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG 144
DYYFDSY H+GIHEEML+D VRT SY+N I QNK LFKDK+VLDVG GTGILS+F AK G
Sbjct: 1 DYYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHG 60
Query: 145 AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLF 204
A HV V+ S + MAK++VE NGFS+ IT+L+GK+E++ LP KVDIIISEWMGYFLL+
Sbjct: 61 AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLY 120
Query: 205 ENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQ 264
E+M++TVLYARD +LV+ G++ PDK S++L +ED++YKD+K+ +W +VYGFD S
Sbjct: 121 ESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYGFDYSPFVPL 180
Query: 265 AMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDV 324
+ EP+VDTV++N + T L D++ + D +F + FKL A+R D I+ +V +FD+
Sbjct: 181 VLHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDLAFKSNFKLTAKRQDMINGIVTWFDI 240
Query: 325 TF--TKCHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVD 382
F K + + FSTGP + THWKQT+ Y D L G+ I G L +PN+KN RD++
Sbjct: 241 VFPAPKGKRPVEFSTGPHAPYTHWKQTIFYFPDDLDAETGDTIEGELVCSPNEKNNRDLN 300
Query: 383 IMLKYSLQ-----GRHSAISRIQYYKM 404
I + Y + G + Y M
Sbjct: 301 IKISYKFESNGIDGNSRSRKNEGSYLM 327
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* Length = 340 | Back alignment and structure |
|---|
Score = 396 bits (1019), Expect = e-138
Identities = 150/311 (48%), Positives = 203/311 (65%), Gaps = 1/311 (0%)
Query: 83 SADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK 142
YF SY H+GIHEEMLKD +RT+SY++ IYQN +FKDKVVLDVG GTGILS+F AK
Sbjct: 25 EDGVYFSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAK 84
Query: 143 AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFL 202
AGA V V+ S++ A I+ N + IT++KGKIEE+ LPV KVD+IISEWMGYFL
Sbjct: 85 AGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFL 144
Query: 203 LFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIK 262
LFE+ML++VLYA++K+L G V PD ++ L A+ D D+I FW++VYGF MSC+K
Sbjct: 145 LFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADRIAFWDDVYGFKMSCMK 204
Query: 263 KQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYF 322
K + E +V+ +D +++ +K +D D F++ F L R A+ YF
Sbjct: 205 KAVIPEAVVEVLDPKTLISEPCGIKHIDCHTTSISDLEFSSDFTLKITRTSMCTAIAGYF 264
Query: 323 DVTFTK-CHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDV 381
D+ F K CH + FSTGP+S THWKQTV LE ++ GEA+ G +TV NKK+PR +
Sbjct: 265 DIYFEKNCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSVKAGEALKGKVTVHKNKKDPRSL 324
Query: 382 DIMLKYSLQGR 392
+ L + +
Sbjct: 325 TVTLTLNNSTQ 335
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Length = 348 | Back alignment and structure |
|---|
Score = 378 bits (972), Expect = e-130
Identities = 117/345 (33%), Positives = 179/345 (51%), Gaps = 16/345 (4%)
Query: 73 SMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAG 132
S+ +++SA YF Y + + M++D VRT +YQ I QN FKDK+VLDVG G
Sbjct: 1 SVFSERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCG 60
Query: 133 TGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192
+GILS F A+AGA +YAVE S MA A+ +V++N ++ I V+ GK+EE+ LP +VDI
Sbjct: 61 SGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDI 119
Query: 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDD---KIEF 249
IISE MGY L E ML + L+A+ K+L G + P ++L D + + K F
Sbjct: 120 IISEPMGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANF 178
Query: 250 W--NNVYGFDMSCIKKQAMME----PLVDTVDQNQIVTNCQLLKTMDISKMGPGD-ASFT 302
W + +G D+S ++ A+ E P+VDT D ++ T++ + GD
Sbjct: 179 WYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILMAKSV-KYTVNFLEAKEGDLHRIE 237
Query: 303 APFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEG 362
PFK + +H L +FDV F + ST P THW Q + L G
Sbjct: 238 IPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAG 297
Query: 363 EAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAIS---RIQYYKM 404
+ +SG+ + NK+ D+ I+ + G S+ + +++
Sbjct: 298 DTLSGTCLLIANKRQSYDISIVAQVDQTGSKSSNLLDLKNPFFRY 342
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} Length = 480 | Back alignment and structure |
|---|
Score = 376 bits (967), Expect = e-128
Identities = 117/349 (33%), Positives = 180/349 (51%), Gaps = 16/349 (4%)
Query: 69 DADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLD 128
+ S+ +++SA YF Y + + M++D VRT +YQ I QN FKDK+VLD
Sbjct: 105 TLERSVFSERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLD 164
Query: 129 VGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188
VG G+GILS F A+AGA +YAVE S MA A+ +V++N ++ I V+ GK+EE+ LP
Sbjct: 165 VGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-E 223
Query: 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDD--- 245
+VDIIISE MGY L E ML + L+A+ K+L G + P ++L D + +
Sbjct: 224 QVDIIISEPMGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFT 282
Query: 246 KIEFW--NNVYGFDMSCIKKQAMME----PLVDTVDQNQIVTNCQLLKTMDISKMGPGD- 298
K FW + +G D+S ++ A+ E P+VDT D ++ T++ + GD
Sbjct: 283 KANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILMAKSV-KYTVNFLEAKEGDL 341
Query: 299 ASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGPKSRATHWKQTVLYLEDVLT 358
PFK + +H L +FDV F + ST P THW Q + L
Sbjct: 342 HRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLF 401
Query: 359 ICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAIS---RIQYYKM 404
G+ +SG+ + NK+ D+ I+ + G S+ + +++
Sbjct: 402 AKAGDTLSGTCLLIANKRQSYDISIVAQVDQTGSKSSNLLDLKNPFFRY 450
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Length = 376 | Back alignment and structure |
|---|
Score = 344 bits (882), Expect = e-117
Identities = 107/357 (29%), Positives = 178/357 (49%), Gaps = 30/357 (8%)
Query: 78 EDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILS 137
D + YF +YS ++ML D VR +Y N ++QNK F+ K VLDVG G+GIL+
Sbjct: 19 VDKEVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILA 78
Query: 138 LFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197
++ A+AGA VYAVE ++MA+ A+ +V+AN +++ V++G +E+I LP KVD+IISEW
Sbjct: 79 IWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEW 137
Query: 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYK------DDKIEFWN 251
MGYFLL E+M ++V+ ARD+WL G++ P A ++L I+ D + W+
Sbjct: 138 MGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKSNIADRKRNDFDGAMADWH 197
Query: 252 NV-------YGFDMSCIKKQAMME--------PLVDTVDQNQIVTNCQLLKTMDISKMGP 296
N YG DM + K E + + ++ QI+ ++K MD
Sbjct: 198 NFSDEIKSYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTASV 257
Query: 297 GDASFTAPFKL--VAQRNDYIHALVAYFDVTFT-----KCHKLMGFSTGPKS-RATHWKQ 348
+ + + + +FDV F+ + + +T P THW Q
Sbjct: 258 SEIEEVRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTAPSEQHCTHWGQ 317
Query: 349 TVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 405
V + + + + EG+ ++ L ++ +K+N R ++I L ++
Sbjct: 318 QVFIMSNPINVEEGDNLNLGLLMSRSKENHRLMEIELNCEIKEASGNPKESFKKTYF 374
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A Length = 745 | Back alignment and structure |
|---|
Score = 197 bits (501), Expect = 1e-56
Identities = 51/323 (15%), Positives = 97/323 (30%), Gaps = 53/323 (16%)
Query: 96 IHEEMLKDVVRTKSYQNVIYQ-----NKFLFKDKVVLDVGAGTGILSLFCAKAGA----- 145
++ +D ++ Y + K V+ +G G G + K+
Sbjct: 378 VYNTFEQDQIKYDVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNT 437
Query: 146 ---------AHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVT-----KVD 191
+Y VE + A + + + + +T+++ + + + D
Sbjct: 438 FRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPD 497
Query: 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIED----AEYKDDKI 247
II+SE +G F E + L +L I +P K + Y+ I K I
Sbjct: 498 IIVSELLGSFGDNE-LSPECLDGVTGFLKPTTISIPQKYTSYVKPIMSTHIHQTIKAQSI 556
Query: 248 EFWNNVYGFDMSCIKKQAMMEPL------------------VDTVDQNQIVTNCQLLKTM 289
+ + + E V + + + T
Sbjct: 557 PYLSRAIPSHGRGEPELDEDEMWIQKYPQGHVRNNMDQIYVVYLSKYIPLAETTKPVFTF 616
Query: 290 DISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGPKSRATH---W 346
+ + + V RN + YFD+ K S P + W
Sbjct: 617 EHPNFMNSSNERSDSIEFVMDRNADLMGFAGYFDLQLYKTV---MLSIEPSTHTPGMVSW 673
Query: 347 KQTVLYLEDVLTICEGEAISGSL 369
V+ L D L + EG+ IS +
Sbjct: 674 FPAVIPLRDQLRVGEGDRISLKI 696
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 134 bits (338), Expect = 7e-37
Identities = 35/192 (18%), Positives = 75/192 (39%), Gaps = 11/192 (5%)
Query: 78 EDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILS 137
++KT D+ + F + E + + + L + ++ D+G GTG +
Sbjct: 3 NENKTIHDFELNLICDFFSNMERQGPGSPEVTLK-ALSFIDNLTEKSLIADIGCGTGGQT 61
Query: 138 LFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196
+ A V ++ ++ + +G N +T + G ++++ ++D+I SE
Sbjct: 62 MVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSE 121
Query: 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGF 256
Y + FE LN K+L G + + S + E + +FW + Y
Sbjct: 122 GAIYNIGFERGLN----EWRKYLKKGGYLAVSECSWF-----TDERPAEINDFWMDAYPE 172
Query: 257 DMSCIKKQAMME 268
+ + A +
Sbjct: 173 IDTIPNQVAKIH 184
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 98.8 bits (246), Expect = 6e-24
Identities = 38/192 (19%), Positives = 75/192 (39%), Gaps = 17/192 (8%)
Query: 85 DYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG 144
++F+ YS +E LK + ++ F K VLD+G G G ++ A+ G
Sbjct: 11 KHFFEQYSQMPRSKEGLKAAGEWHELKKMLP----DFNQKTVLDLGCGFGWHCIYAAEHG 66
Query: 145 AAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLL 203
A V ++ S +M AK+ S V+ + IE+I + ++++S L
Sbjct: 67 AKKVLGIDLSERMLTEAKR----KTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLA---LH 119
Query: 204 FENMLNTVLYARDKWLVDDG-IVLPDKASLYLTAIEDAEYKDD---KIEFWNNVYGFDMS 259
+ + + L G + + ++ Y D+ K+ + + Y F+ S
Sbjct: 120 YIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRY-FNES 178
Query: 260 CIKKQAMMEPLV 271
+ E +
Sbjct: 179 MRTSHFLGEDVQ 190
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 79.9 bits (197), Expect = 3e-17
Identities = 30/193 (15%), Positives = 69/193 (35%), Gaps = 13/193 (6%)
Query: 78 EDDKTSADYYFDSYSHFGIHEEMLKDVV-RTKSYQNVIYQNKFLFKDKVVLDVGAGTGIL 136
++ + D+ F + + + ++ + + L D + D+G GTG
Sbjct: 3 NNNTSIHDFDFSF--ICNYFKLLKRQGPGSPEATRKAVSFINELTDDAKIADIGCGTGGQ 60
Query: 137 SLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195
+LF A + ++ + + ++ + + G ++ + ++D+I S
Sbjct: 61 TLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWS 120
Query: 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYG 255
E Y + FE +N K+L G + + + +E + +FW + Y
Sbjct: 121 EGAIYNIGFERGMNEWS----KYLKKGGFIA-----VSEASWFTSERPAEIEDFWMDAYP 171
Query: 256 FDMSCIKKQAMME 268
ME
Sbjct: 172 EISVIPTCIDKME 184
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 6e-15
Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 6/111 (5%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQMA-NMAKQIVEANGFSNVITV 175
F+ + ++LDVG+ L + + G A E + A + VEA+G I V
Sbjct: 11 SFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQV 70
Query: 176 LKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
+V +I MG L + + K + ++L
Sbjct: 71 RLANGLAAFEETDQVSVITIAGMGGRL----IARILEEGLGKLANVERLIL 117
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 2e-13
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 6/111 (5%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQMA-NMAKQIVEANGFSNVITV 175
++ K++ + D+G+ L F K A+ A E A++ V ++G + I V
Sbjct: 17 SYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDV 76
Query: 176 LKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
KG + +D I+ MG L + + K ++L
Sbjct: 77 RKGNGLAVIEKKDAIDTIVIAGMGGTL----IRTILEEGAAKLAGVTKLIL 123
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 2e-12
Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 6/111 (5%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQMA-NMAKQIVEANGFSNVITV 175
++ K +LDVG+ L +F + G A E A + V +G ++ I V
Sbjct: 17 NYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDV 76
Query: 176 LKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
+D I MG L + + + DK +VL
Sbjct: 77 RLANGLSAFEEADNIDTITICGMGGRL----IADILNNDIDKLQHVKTLVL 123
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 6e-12
Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 14/126 (11%)
Query: 80 DKTSADYY--FDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILS 137
DK A I+ + ++++ +F +D+G+G G LS
Sbjct: 10 DKKGAKNMDEISKTLFAPIYPIIAENIIN-----------RFGITAGTCIDIGSGPGALS 58
Query: 138 LFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196
+ AK + A++ S M +A + + ++ I +++G + I + D+I+S
Sbjct: 59 IALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSR 118
Query: 197 WMGYFL 202
+F
Sbjct: 119 GSVFFW 124
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 1e-11
Identities = 20/183 (10%), Positives = 56/183 (30%), Gaps = 11/183 (6%)
Query: 69 DADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLD 128
V+ G + F + +L R ++ + + L VV
Sbjct: 72 HRLVTHQPGSGALAPLERVF-----YERLPAVLATRERHGHFRRAL--QRHLRPGCVVAS 124
Query: 129 VGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185
V G L + + ++ + A ++ + + IT+ + +++
Sbjct: 125 VPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT 184
Query: 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDD 245
D++ S + + + + + + L G ++ + D+ +
Sbjct: 185 REG-YDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQ 243
Query: 246 KIE 248
I+
Sbjct: 244 AID 246
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 5e-11
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEI- 183
++D+ +G GI+ L + A + VE ++A+MAK+ V N + I +++ +++I
Sbjct: 53 IIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKIT 112
Query: 184 -ELPVTKVDIIIS 195
+P + DI+
Sbjct: 113 DLIPKERADIVTC 125
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 4e-10
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 176
+ + K V DVG G+GIL++ K GA V A + S + A++ NG ++
Sbjct: 56 RAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQK 115
Query: 177 KGKIEEIELPVTKVDIII 194
+ +++ K D+I+
Sbjct: 116 TSLLADVD---GKFDLIV 130
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 58.0 bits (139), Expect = 1e-09
Identities = 22/186 (11%), Positives = 62/186 (33%), Gaps = 12/186 (6%)
Query: 80 DKTSADYYFDSY-SHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSL 138
K + + +Y ++G +D R + + F+ + VLD+G G L+L
Sbjct: 10 KKQQRKFQYGNYCKYYGYRNPSCEDG-RLRVLK------PEWFRGRDVLDLGCNVGHLTL 62
Query: 139 FCA-KAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196
A K G + + ++ ++ + A+Q + + + + + + +
Sbjct: 63 SIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRK 122
Query: 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLT--AIEDAEYKDDKIEFWNNVY 254
+ + + D V P+ ++ + + + ++ V
Sbjct: 123 RSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVL 182
Query: 255 GFDMSC 260
++
Sbjct: 183 CLSLTK 188
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 2e-09
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI 180
++D+G G G + + GA++V ++ S+ M A+ G IT + +
Sbjct: 43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTG----ITYERADL 98
Query: 181 EEIELPVTKVDIIIS 195
+++ LP D+ S
Sbjct: 99 DKLHLPQDSFDLAYS 113
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 1e-08
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKG 178
L KD VV+DVG G+G +++ AK VYA++ A + KQ + N ++KG
Sbjct: 33 LNKDDVVVDVGCGSGGMTVEIAKR-CKFVYAIDYLDGAIEVTKQNLAKFNIKNC-QIIKG 90
Query: 179 KIEEIELPVTKVDIII 194
+ E++ L + +
Sbjct: 91 RAEDV-LDKLEFNKAF 105
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 1e-08
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 122 KDKVVLDVGAGTGILSLFCAKA--GAAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKG 178
+ VLDVG G G + +K VYA++ +M N A + V G NV +
Sbjct: 37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLK-S 95
Query: 179 KIEEIELPVTKVDIIIS 195
+ +I LP VD I
Sbjct: 96 EENKIPLPDNTVDFIFM 112
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 1e-08
Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 3/117 (2%)
Query: 88 FDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA-A 146
Y H E L+ + ++ + +++ + VL+ G G G ++ AK A
Sbjct: 3 LTEYVHGYSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDA 62
Query: 147 HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFL 202
+ +++ S A++ E NG NV L+ I + + D I ++ L
Sbjct: 63 EITSIDISPESLEKARENTEKNGIKNV-KFLQANIFSLPFEDSSFDHIFVCFVLEHL 118
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 2e-08
Identities = 50/351 (14%), Positives = 107/351 (30%), Gaps = 84/351 (23%)
Query: 98 EEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDV--GAGTGILSLFCAKAGA------AHVY 149
++M K ++ + ++I + + ++ F +
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98
Query: 150 AVECSQMANMAKQIVEA-NGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENML 208
E Q + M + +E + N V + V+++ + L
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFA------KYNVSRLQPYLK------------L 140
Query: 209 NTVLYA--RDKWLVDDGIVLPDKASLYLTAIEDAEYK---DDKIEFWNNVYGFDMSCIKK 263
L K ++ DG++ K + L + + D KI FW N+ +C
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI-FWLNL-K---NCNSP 195
Query: 264 QAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVA---------QRNDY 314
+ ++E L Q LL +D + D S ++ + + Y
Sbjct: 196 ETVLEML-----QK-------LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 315 IHAL-----------VAYFDVTFTKCHKLMGFSTGPKS---RATHWKQTVLYLEDV---L 357
+ L F++ C L+ +T K + T + L+ L
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNL---SCKILL--TTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 358 TICEGEAISGSLTVAPNKKNPRDV-DIM-LKYSLQGR--HSAISRIQYYKM 404
T E +++ + PR+V + S+ ++ +K
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 3e-05
Identities = 61/408 (14%), Positives = 104/408 (25%), Gaps = 150/408 (36%)
Query: 72 VSMIDGEDDKTSADYYFDSYSHFGIHEEMLKD--------VVRTKSYQNVIYQNKFLFKD 123
+S I E + S Y + + D V R + Y + + L +
Sbjct: 95 MSPIKTEQRQPSMMT--RMYIEQ--RDRLYNDNQVFAKYNVSRLQPYLKL---RQALLEL 147
Query: 124 K----VVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNV--ITVLK 177
+ V++D G+G + A V C + ++ F + + +
Sbjct: 148 RPAKNVLIDGVLGSGKTWV------ALDV----CL-----SYKVQCKMDF-KIFWLNL-- 189
Query: 178 GKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAI 237
E ++ ML +LY D + D +S I
Sbjct: 190 KNCNSPE------TVLE------------MLQKLLYQIDP----NWTSRSDHSSNIKLRI 227
Query: 238 EDAE-----------YK------DDKIEFWNN--VYGFDMSC-IKKQAMMEPLVDTVDQN 277
+ Y+ + N F++SC I L+ T +
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLN---VQNAKAWNAFNLSCKI--------LLTTRFKQ 276
Query: 278 QIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVA-YFDVTFT-------KC 329
VT+ T + + T D + +L+ Y D
Sbjct: 277 --VTDFLSAATTTHISLDHHSMTLTP---------DEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 330 HKLM--GFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTV-APN--KKN------- 377
+ + + W D LT I SL V P +K
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLT----TIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 378 PRDVDI-----------------------MLKYSLQGRHSAISRIQYY 402
P I + KYSL + S I
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 2e-08
Identities = 23/180 (12%), Positives = 56/180 (31%), Gaps = 23/180 (12%)
Query: 85 DYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG 144
D + DV+ ++ F+ +L++G+ G + +
Sbjct: 9 DQEIKDTAGHKYAYNFDFDVMH----PFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF 64
Query: 145 AAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLL 203
+ VE + + A+ ++ IT + + E+ +LP + D I+ +
Sbjct: 65 -NDITCVEASEEAISHAQGRLKDG-----ITYIHSRFEDAQLP-RRYDNIVL-----THV 112
Query: 204 FE---NMLNTVLYARDKWLVDDGIVL---PDKASLYLTAIEDAEYKDDKIEFWNNVYGFD 257
E + + + D WL + G + P+ ++ +
Sbjct: 113 LEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHG 172
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 9e-08
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 11/75 (14%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI 180
K V++D G G G + + +Y ++ + K+ ++ +
Sbjct: 17 KKGVIVDYGCGNGFYCKYLLEFA-TKLYCIDINVIALKEVKEKFDS---------VITLS 66
Query: 181 EEIELPVTKVDIIIS 195
+ E+P VD I+
Sbjct: 67 DPKEIPDNSVDFILF 81
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 9e-08
Identities = 32/177 (18%), Positives = 66/177 (37%), Gaps = 16/177 (9%)
Query: 89 DSYSHF-GIHEEMLKDVVRTKSYQNVI--YQNKFLFKDKVVLDVGAGTGILSLFCAKAGA 145
+ Y+ F I++++++ V K + + I + LD+ GTG L+
Sbjct: 1 NCYNKFAHIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF- 59
Query: 146 AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW--MGYFL 202
+ +AV+ SQ M + A+ + G + I + + K D+I Y +
Sbjct: 60 KNTWAVDLSQEMLSEAENKFRSQGLK--PRLACQDISNLNIN-RKFDLITCCLDSTNYII 116
Query: 203 LFENMLNTVLYARDKWLVDDGIVL-----PDKASLYLTAIEDAEYKDDKIEFWNNVY 254
+++ L + G+ + K S L + D+ +W N +
Sbjct: 117 DSDDLKKYFKAVS-NHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQF 172
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 1e-07
Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 10/125 (8%)
Query: 78 EDDKTSADYYFDSYSHFGIHEEMLKD-------VVRTKSYQNVIYQNKFLFKDKVVLDVG 130
A Y+ Y F ++ +K V K +++ + FK VV+D
Sbjct: 27 AAVPELAKYWAQRYRLFSRFDDGIKLDREGWFSVTPEKIAEHIAGRVSQSFKCDVVVDAF 86
Query: 131 AGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189
G G ++ A G V A++ + +A+ E G ++ I + G + K
Sbjct: 87 CGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLK 144
Query: 190 VDIII 194
D++
Sbjct: 145 ADVVF 149
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 1e-07
Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 15/123 (12%)
Query: 74 MIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGT 133
M E + Y + + E L+ ++ K++ K VLD+ G
Sbjct: 1 MGFKEYYRVFPTYTDINSQEYRSRIETLEPLLM-----------KYMKKRGKVLDLACGV 49
Query: 134 GILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192
G S G V V+ S M A++ ++ + + + G ++ D
Sbjct: 50 GGFSFLLEDYG-FEVVGVDISEDMIRKAREYAKSRESN--VEFIVGDARKLSFEDKTFDY 106
Query: 193 IIS 195
+I
Sbjct: 107 VIF 109
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 2e-07
Identities = 20/79 (25%), Positives = 27/79 (34%), Gaps = 8/79 (10%)
Query: 117 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVL 176
N + V+D G G GIL+ GA V A + A I A + +
Sbjct: 46 NDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDA-----IETAKRNCGGVNFM 100
Query: 177 KGKIEEIELPVTKVDIIIS 195
+ EI K D I
Sbjct: 101 VADVSEISG---KYDTWIM 116
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 2e-07
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEI 183
LD GAG G ++ A +E + +M ++ V + +E
Sbjct: 95 SRALDCGAGIGRITKNLLTKLYATTDLLE--PVKHMLEEAKRELAGMPVGKFILASMETA 152
Query: 184 ELPVTKVDIIISEWMGYFL 202
LP D+I+ +W +L
Sbjct: 153 TLPPNTYDLIVIQWTAIYL 171
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-07
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKG 178
K+ V +DVG GTG ++L A VYA++ + A + + ++ +G + +T+++G
Sbjct: 31 PGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEG 89
Query: 179 KIEEIELPVTKVDIII 194
E + +DI +
Sbjct: 90 DAPEALCKIPDIDIAV 105
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 4e-07
Identities = 27/156 (17%), Positives = 47/156 (30%), Gaps = 24/156 (15%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG 178
L + LD+GAG G + F + + + + ++ G ++ ITV G
Sbjct: 80 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYG 139
Query: 179 KIEEIELPVTKVDIIISEWM---------------------GYFLLFENMLNTVLYARDK 217
EI D I S+ G + + M +
Sbjct: 140 SFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSI 199
Query: 218 WLVDDGIVLPDKASL--YLTAIEDAEYKDDKIEFWN 251
+ D I L D SL Y + ++ +
Sbjct: 200 QPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRP 235
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 4e-07
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 122 KDKVVLDVGAGTGILSLFCA-KAGAAHVYAVECS-QMANMAKQIVEAN---GFSNVITVL 176
+ + D+GAG G + A + A V E S +MA A++ +E FS I VL
Sbjct: 36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVL 95
Query: 177 KGKIEEIE-------LPVTKVDIIIS 195
+ + LP +I
Sbjct: 96 EADVTLRAKARVEAGLPDEHFHHVIM 121
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 5e-07
Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 3/86 (3%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI 180
DK VLD GAG + L Y +E S A+ N F + + KG I
Sbjct: 23 LDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFK--LNISKGDI 80
Query: 181 EEIELPVTKVDIIISEWMGYFLLFEN 206
++ + + S + + +
Sbjct: 81 RKLPFKDESMSFVYSYGTIFHMRKND 106
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 5e-07
Identities = 33/179 (18%), Positives = 64/179 (35%), Gaps = 15/179 (8%)
Query: 84 ADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA 143
A+YY Y + D V I++ + + VLD+ GTGI +L A+
Sbjct: 9 AEYYDTIYRRRIERVKAEIDFVEE------IFKEDAKREVRRVLDLACGTGIPTLELAER 62
Query: 144 GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFL 202
G V ++ + M +A++ + I L+G + EI + D + +
Sbjct: 63 G-YEVVGLDLHEEMLRVARRKAKERNLK--IEFLQGDVLEIAFK-NEFDAVTMFFSTIMY 118
Query: 203 LFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIED----AEYKDDKIEFWNNVYGFD 257
E L + + L G+ + D + + E K ++ + +
Sbjct: 119 FDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVE 177
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 7e-07
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNV-ITVLKGK 179
KD +LD+G G G++ + A + ++ A +AK+ ++ N N I V+
Sbjct: 52 KDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSD 110
Query: 180 IEEIELPVTKVDIIIS 195
+ E + K + II+
Sbjct: 111 LYE-NVKDRKYNKIIT 125
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 8e-07
Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 13/103 (12%)
Query: 94 FGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVEC 153
H L +++T + VLD+GAG G +L + V+
Sbjct: 3 HHHHHHSLGLMIKTAE----------CRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDA 51
Query: 154 SQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195
++ M +A + G NV G E + P DII
Sbjct: 52 TKEMVEVASSFAQEKGVENVRFQQ-GTAESLPFPDDSFDIITC 93
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 8e-07
Identities = 29/74 (39%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIE 181
K V+ D+GAGTG S+ A G VYAVE S M +Q A V G E
Sbjct: 34 KGSVIADIGAGTGGYSVALANQG-LFVYAVEPS--IVMRQQ---AVVHPQV-EWFTGYAE 86
Query: 182 EIELPVTKVDIIIS 195
+ LP VD +IS
Sbjct: 87 NLALPDKSVDGVIS 100
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 1e-06
Identities = 25/128 (19%), Positives = 51/128 (39%), Gaps = 11/128 (8%)
Query: 78 EDDKTSADYYFDSYSHF--GIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGI 135
+ SA+ +DS + F +EM R+ + +++ K+ VLDVG G G
Sbjct: 10 FNWHESAEKKWDSSAEFWNQNSQEMWDSGSRSTIIP---FFEQYVKKEAEVLDVGCGDGY 66
Query: 136 LSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194
+ ++ G V+ S M K+ E ++ +KG + + + + I+
Sbjct: 67 GTYKLSRTG-YKAVGVDISEVMIQKGKERGEGPD----LSFIKGDLSSLPFENEQFEAIM 121
Query: 195 SEWMGYFL 202
+ +
Sbjct: 122 AINSLEWT 129
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 1e-06
Identities = 26/142 (18%), Positives = 44/142 (30%), Gaps = 27/142 (19%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184
VLDVG G G ++ A A V + S+ N A A G +N +T ++
Sbjct: 65 VLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLP 124
Query: 185 LPVTKVDIIISEWM---------------------GYFLLFENMLNTVLYARDKWLVD-- 221
D + + G + + +L + K VD
Sbjct: 125 FEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAF 184
Query: 222 -DGIVLPDKASL--YLTAIEDA 240
G + + Y + + A
Sbjct: 185 RAGGGVLSLGGIDEYESDVRQA 206
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 1e-06
Identities = 37/168 (22%), Positives = 61/168 (36%), Gaps = 30/168 (17%)
Query: 75 IDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTG 134
+ G D TS DYYF F E++K R + Y + + VLD+G G G
Sbjct: 3 LSGTDIHTS-DYYFLFEEKFRGSRELVKA--RLRRY------IPYFKGCRRVLDIGCGRG 53
Query: 135 ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--ELPVTKVD 191
C + G V+ ++ M + V+K E LP +D
Sbjct: 54 EFLELCKEEG-IESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSLPDKYLD 103
Query: 192 IIISEWMGYFL--LFENMLNTVLYARDKWLVDDGIVL---PDKASLYL 234
++ + +F+ L L +L + ++ P+ SLY
Sbjct: 104 GVM---ISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYS 148
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 1e-06
Identities = 10/78 (12%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
Query: 122 KDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKG 178
+ V+D G G + F A V+ + + + + + +T++K
Sbjct: 22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKD 81
Query: 179 KIEEIELPV-TKVDIIIS 195
+ ++ + V ++
Sbjct: 82 GHQNMDKYIDCPVKAVMF 99
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 1e-06
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183
V L++G GTG ++L G A++ M + +Q + + V++ I
Sbjct: 42 VFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKIAGVDRK--VQVVQADARAI 98
Query: 184 ELPVTKVDIIIS 195
LP V +I
Sbjct: 99 PLPDESVHGVIV 110
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 2e-06
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKI 180
+ +V+D G G + F A + VYA + + A Q + G N +L G
Sbjct: 22 DESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHE 80
Query: 181 EEIELPVTKVDIII 194
+ I
Sbjct: 81 NLDHYVREPIRAAI 94
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 2e-06
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 184
VL+ G GTG L+ AG VY +E S +M +AK+ + ++ +G E
Sbjct: 49 VLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKLPKE-----FSITEGDFLSFE 102
Query: 185 LPVTKVDIIIS 195
+P T +D I+S
Sbjct: 103 VP-TSIDTIVS 112
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 3e-06
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 176
+ L VLD+G G+G+L++ K G V+ M A+ + NG L
Sbjct: 116 RHLRPGDKVLDLGTGSGVLAIAAEKLG-GKALGVDIDPMVLPQAEANAKRNGVRP--RFL 172
Query: 177 KGKIEEIELPVTKVDIII 194
+G +E LP D+++
Sbjct: 173 EGSLEA-ALPFGPFDLLV 189
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 Length = 177 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 3e-06
Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 32/150 (21%)
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQI---VEANGFSNVITVLK 177
F VLD+ AG+G L++ G + VE ++ A I + N T+LK
Sbjct: 30 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKA--QAIIQDNIIMTKAENRFTLLK 87
Query: 178 GKIEE-IELPVTKVDIIISEWMGYFL-------LFENMLNTVLYARDKWLVDDGIV---- 225
+ E I+ + D++ FL + + A L + +V
Sbjct: 88 MEAERAIDCLTGRFDLV-------FLDPPYAKETIVATIEAL--AAKNLLSEQVMVVCET 138
Query: 226 -----LPDKASLYLTAIEDAEYKDDKIEFW 250
LP + + L ++ Y K+ +
Sbjct: 139 DKTVLLPKEIA-TLGIWKEKIYGISKVTVY 167
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 3e-06
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGK 179
+ KVV D+GAGTG+LS GA V VE + A ++ + + V G
Sbjct: 48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGK--FKVFIGD 105
Query: 180 IEEIELPVTKVDIIIS 195
+ E ++VDI+I
Sbjct: 106 VSEFN---SRVDIVIM 118
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 3e-06
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 184
LD+G G G SL+ A G V A + + ++I N + + +
Sbjct: 36 TLDLGCGNGRNSLYLAANG-YDVDAWDKNAMSIANVERIKSIENLDN-LHTRVVDLNNLT 93
Query: 185 LPVTKVDIIISEWMGYFL 202
+ D I+S + FL
Sbjct: 94 FD-RQYDFILSTVVLMFL 110
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 4e-06
Identities = 26/160 (16%), Positives = 58/160 (36%), Gaps = 9/160 (5%)
Query: 70 ADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDV 129
ADV + + D+Y + + + ++++D T + + + VL++
Sbjct: 34 ADVLLASVGERGVLCDFYDEGAAD--TYRDLIQDADGTSEARE--FATRTGPVSGPVLEL 89
Query: 130 GAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS--NVITVLKGKIEEIELP 186
AG G L+ G V A+E S + ++ + + T+++G + L
Sbjct: 90 AAGMGRLTFPFLDLG-WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALD 148
Query: 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
+ ++ L E + + + L G L
Sbjct: 149 -KRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFL 187
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Length = 284 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 4e-06
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKI-EEI 183
V D+G G+G + + AK A V+A + S A +A++ E +G S+ V KG+ E
Sbjct: 127 VADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF 186
Query: 184 ELPVTKVDIIIS 195
+ +++I+S
Sbjct: 187 KEKFASIEMILS 198
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} Length = 396 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 5e-06
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 14/85 (16%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFS-------- 170
++K VL+ + TG ++ G + V +V+ SQ A ++A+Q VE N
Sbjct: 218 YVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVR 277
Query: 171 -NVITVLKGKIEEIELPVTKVDIII 194
+V +L+ + E K D+I+
Sbjct: 278 DDVFKLLRTYRDRGE----KFDVIV 298
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 5e-06
Identities = 32/206 (15%), Positives = 63/206 (30%), Gaps = 12/206 (5%)
Query: 84 ADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQ---NKFLFKDKVVLDVGAGTGILSLFC 140
++Y +S G + ++ N I + + VLD+G G G L
Sbjct: 24 REHY-NSIRERGRESRQRSKTINIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKY 82
Query: 141 AKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-PVTKVDIIISEW- 197
+AG Y V+ ++ N A+ + + + D+I S++
Sbjct: 83 ERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS 142
Query: 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFD 257
Y L+ + L G + S + + + N+ Y +
Sbjct: 143 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVIL-----ERYKQGRMSNDFYKIE 197
Query: 258 MSCIKKQAMMEPLVDTVDQNQIVTNC 283
+ ++ M V NC
Sbjct: 198 LEKMEDVPMESVREYRFTLLDSVNNC 223
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 6e-06
Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 12/85 (14%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGA--AHVYAVECS-QMANMAKQIVEA--NGFSNVITVL 176
+ K+++DVG G G +L A+ + + S M A+ I E + + N ++
Sbjct: 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKN-VSFK 94
Query: 177 KGKIEEIE------LPVTKVDIIIS 195
++ + + K+D+I +
Sbjct: 95 ISSSDDFKFLGADSVDKQKIDMITA 119
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 6e-06
Identities = 25/160 (15%), Positives = 54/160 (33%), Gaps = 15/160 (9%)
Query: 74 MIDGEDDKTSADYYFDSYSHF--GIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGA 131
M Y + +H+ KD R + + + + K +LDV
Sbjct: 1 MAHSSATAGPQADYSGEIAELYDLVHQGKGKDYHREAADLAALVR-RHSPKAASLLDVAC 59
Query: 132 GTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190
GTG+ A + V +E S M +A++ + G + + L +
Sbjct: 60 GTGMHLRHLADSF-GTVEGLELSADMLAIARRRNPD------AVLHHGDMRDFSLG-RRF 111
Query: 191 DIIISEW--MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228
+ + +G+ + + ++ DG+V+ +
Sbjct: 112 SAVTCMFSSIGHLAGQAELDAALERFA-AHVLPDGVVVVE 150
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 6e-06
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITV 175
++ +LD+GAGTG+LS F + A V+ S+ M +AK N +
Sbjct: 40 SVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLK---VKY 96
Query: 176 LKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
++ + + K D+++S + L E+ + L + GI +
Sbjct: 97 IEADYSKYDFE-EKYDMVVSALSIHHLEDEDKKELYKRSY-SILKESGIFI 145
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 7e-06
Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 6/121 (4%)
Query: 83 SADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK 142
S D + + K T + +V+ K + KV LD+G G G SL+ +
Sbjct: 82 SDDLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKV-LDLGCGQGRNSLYLSL 140
Query: 143 AGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201
G V + + ++ + + E + I+ I + D I+S + F
Sbjct: 141 LG-YDVTSWDHNENSIAFLNETKEKENLN--ISTALYDINAANIQ-ENYDFIVSTVVFMF 196
Query: 202 L 202
L
Sbjct: 197 L 197
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 7e-06
Identities = 19/122 (15%), Positives = 40/122 (32%), Gaps = 10/122 (8%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 184
L++G G + A + ++ + A Q +S++ + I +
Sbjct: 55 GLEIGCAAGAFTEKLAPHC-KRLTVIDVMPRAIGRACQ--RTKRWSHI-SWAATDILQ-F 109
Query: 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL----PDKASLYLTAIEDA 240
D+I+ + Y+L + T + K L G ++ D + A
Sbjct: 110 STAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRWGHVAGA 169
Query: 241 EY 242
E
Sbjct: 170 ET 171
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 8e-06
Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 9/104 (8%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184
+LD+G+G+G + A+ ++ S AK+ E G S + +
Sbjct: 40 ILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY- 98
Query: 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARD--KWLVDDGIVL 226
+ K D+ + L GI+L
Sbjct: 99 VANEKCDVAACVGA-----TWIAGGFAGAEELLAQSLKPGGIML 137
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 8e-06
Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 2/81 (2%)
Query: 115 YQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVIT 174
L + +L +G G LS G +V +V+ S + + +
Sbjct: 35 LLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSS--VVVAAMQACYAHVPQLR 92
Query: 175 VLKGKIEEIELPVTKVDIIIS 195
+ +++ P D+++
Sbjct: 93 WETMDVRKLDFPSASFDVVLE 113
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 Length = 396 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 9e-06
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 176
K++ VLDV TG ++ A AGA V ++ S A AK+ + NG + + +
Sbjct: 213 KWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFI 272
Query: 177 KG 178
G
Sbjct: 273 VG 274
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 1e-05
Identities = 24/136 (17%), Positives = 51/136 (37%), Gaps = 30/136 (22%)
Query: 76 DGEDDKTSADYYFDSYSH----------FGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKV 125
K + ++D + + ++ ++ + ++L
Sbjct: 9 HHHHMKLRSWEFYDRIARAYDSMYETPKWKLYHRLIGSFLE-----------EYLKNPCR 57
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184
VLD+G GTG SLF + G V V+ S+ M +A++ V V++ K E++
Sbjct: 58 VLDLGGGTGKWSLFLQERG-FEVVLVDPSKEMLEVARE-------KGVKNVVEAKAEDLP 109
Query: 185 LPVTKVDIIISEWMGY 200
P + +++
Sbjct: 110 FPSGAFEAVLALGDVL 125
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Length = 230 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 1e-05
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGK 179
+V L++G G + A+ V A E + A++ +E N + + G
Sbjct: 55 GGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGG 114
Query: 180 IEEIELPVTKVDIIIS 195
I + + D+I S
Sbjct: 115 IIK-GVVEGTFDVIFS 129
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 1e-05
Identities = 26/132 (19%), Positives = 53/132 (40%), Gaps = 27/132 (20%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI 180
+ K VLD+G +G L + G V +E + A AK+ + V+ G I
Sbjct: 32 EWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKE--------KLDHVVLGDI 82
Query: 181 EEIELPVT--KVDIIIS----EWMGYFLLFENMLNTVLYARDKWLVDDGIVL---PDKAS 231
E +++P + D +I E + + V+ ++ +G++L P+ +
Sbjct: 83 ETMDMPYEEEQFDCVIFGDVLEHL------FD-PWAVIEKVKPYIKQNGVILASIPNVSH 135
Query: 232 L-YLTAIEDAEY 242
+ L + +
Sbjct: 136 ISVLAPLLAGNW 147
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 1e-05
Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 184
+LDVG+GTG + A G + +E + ++ +A+Q + +T G I ++
Sbjct: 45 ILDVGSGTGRWTGHLASLG-HQIEGLEPATRLVELARQTHPS------VTFHHGTITDLS 97
Query: 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
+ +++ W + L L A + D G +L
Sbjct: 98 DSPKRWAGLLA-WYSLIHMGPGELPDALVALRMAVEDGGGLL 138
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 1e-05
Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 14/144 (9%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI 180
K + D+G GTG +L A V V+ S+ M +A++ + +
Sbjct: 33 PGKRIADIGCGTGTATLLLAD--HYEVTGVDLSEEMLEIAQEKAMETNRH--VDFWVQDM 88
Query: 181 EEIELPVTKVDIIISEW--MGYFLLFENMLNTVLYARDKWLVDDGIVL-----PDKASLY 233
E+ELP VD I + Y ++ T A + L D G +L P K
Sbjct: 89 RELELPEP-VDAITILCDSLNYLQTEADVKQTFDSAA-RLLTDGGKLLFDVHSPYKMETL 146
Query: 234 LTAIEDAEYKDDKIEFWNNVYGFD 257
A + + W G +
Sbjct: 147 FNGKTYATHAEQSSYIWFADPGEE 170
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 1e-05
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI 180
++ VLDV G G ++ A V A + ++ + +A+ +E NG V V G
Sbjct: 37 GNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQ-GDA 94
Query: 181 EEIELPVTKVDIIIS 195
E++ + I+
Sbjct: 95 EQMPFTDERFHIVTC 109
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* Length = 425 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKG 178
L + + +LD+ +G G ++ AK +V + ++ A MA++ VE N V
Sbjct: 288 LVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEINNVDAEFEV--A 344
Query: 179 KIEEIELPVTKVDIII 194
E+ + D +I
Sbjct: 345 SDREVSVK--GFDTVI 358
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 2e-05
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 126 VLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE 182
++D G G G L L + ++ + + A+++ + L+G E
Sbjct: 26 IVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYD--SEFLEGDATE 83
Query: 183 IELPVTKVDIIISEW 197
IEL K DI I
Sbjct: 84 IELN-DKYDIAICHA 97
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 2e-05
Identities = 30/186 (16%), Positives = 56/186 (30%), Gaps = 24/186 (12%)
Query: 80 DKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLF 139
+ AD Y Y G + + +LDV GTG
Sbjct: 5 EVDHADVYDLFYLGRGKDYAAEASDIAD-------LVRSRTPEASSLLDVACGTGTHLEH 57
Query: 140 CAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW- 197
K +E S+ M A++ + T+ +G + + L K ++S +
Sbjct: 58 FTKEF-GDTAGLELSEDMLTHARKRLPD------ATLHQGDMRDFRLG-RKFSAVVSMFS 109
Query: 198 -MGYFLLFENMLNTVLYARDKWLVDDGIVL-----PDKASLYLTAIEDAEYKDDKIEFWN 251
+GY E + V + L G+V+ + D +D +
Sbjct: 110 SVGYLKTTEELGAAVASFA-EHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARV 168
Query: 252 NVYGFD 257
+ +
Sbjct: 169 SHSVRE 174
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 126 VLDVGAGTGILSLFCAK-AGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKIEEI 183
VLDVG G G+LS+ A+ + + + S A ++ + ANG + E+
Sbjct: 200 VLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNV-FSEV 258
Query: 184 ELPVTKVDIIIS 195
+ + D+IIS
Sbjct: 259 K---GRFDMIIS 267
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 2e-05
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYA 150
+ L K V ++GAG G++S+ AGA V A
Sbjct: 71 LCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVA 107
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* Length = 385 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 14/87 (16%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFS------ 170
K VL++ + T S+ A GA +V+ ++ + ++ EAN
Sbjct: 208 NGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQL 267
Query: 171 ---NVITVLKGKIEEIELPVTKVDIII 194
+V K DIII
Sbjct: 268 VVMDVFDYFKYARRHHL----TYDIII 290
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 2e-05
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 9/103 (8%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKIEEIE 184
+L + G G + F A G V AV+ S + AKQ+ + G IT ++ + + +
Sbjct: 33 ILCLAEGEGRNACFLASLG-YEVTAVDQSSVGLAKAKQLAQEKGVK--ITTVQSNLADFD 89
Query: 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYAR-DKWLVDDGIVL 226
+ + I+S F + L LY + + L G+ +
Sbjct: 90 IVADAWEGIVS----IFCHLPSSLRQQLYPKVYQGLKPGGVFI 128
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 3e-05
Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 5/97 (5%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECS-QMANMAKQIVEANGFSNVITVLK 177
+ + D+G G+G +++ ++ E S + G S+ I V +
Sbjct: 23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQ 82
Query: 178 GKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYA 214
G + D+I +G L +
Sbjct: 83 GAPRAFDDVPDNPDVIF---IGGGLTAPGVFAAAWKR 116
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 Length = 187 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 3e-05
Identities = 20/152 (13%), Positives = 47/152 (30%), Gaps = 33/152 (21%)
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQI---VEANGFSNVITVLK 177
F + LD+ +G+G L++ G +E + A K I + V K
Sbjct: 43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAA--LKVIKENIAITKEPEKFEVRK 100
Query: 178 GK----IEEIELPVTKVDIIISEWMGYFL-------LFENMLNTVLYARDKWLVDDGIVL 226
+E+ + D++ L + L + + L ++ +++
Sbjct: 101 MDANRALEQFYEEKLQFDLV-------LLDPPYAKQEIVSQLEKM--LERQLLTNEAVIV 151
Query: 227 --------PDKASLYLTAIEDAEYKDDKIEFW 250
+ L + Y ++ +
Sbjct: 152 CETDKTVKLPETIGTLKKTRETVYGITQVTIY 183
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 4e-05
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 7/109 (6%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 179
L ++ VLD+G+G G ++ + AH + ++ N+ E +N I
Sbjct: 53 LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICS--NIVNMANERVSGNNKIIFEAND 110
Query: 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARD--KWLVDDGIVL 226
I E P D+I S +L ++ N + KWL G +L
Sbjct: 111 ILTKEFPENNFDLIYSRDA---ILALSLENKNKLFQKCYKWLKPTGTLL 156
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 5e-05
Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 24/119 (20%)
Query: 84 ADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFL-----FKDKVVLDVGAGTGILSL 138
A + D+ H I + + L + + VLD+G G G L
Sbjct: 21 AQAWIDAVRHGAIE------------SRRQVTDQAILLAILGRQPERVLDLGCGEGWLLR 68
Query: 139 FCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV-TKVDIIIS 195
A G V+ + + + A+ A G V ++ E ++PV D+I +
Sbjct: 69 ALADRG-IEAVGVDGDRTLVDAAR----AAGAGEVHLASYAQLAEAKVPVGKDYDLICA 122
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 7e-05
Identities = 12/77 (15%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 120 LFKDKVVLDVGAGT-GILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLK 177
+ + + +G G + + + V VE +A ++++++E G V V+
Sbjct: 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGV-NVIT 178
Query: 178 GKIEEIELPVTKVDIII 194
G + + D+++
Sbjct: 179 GDET--VIDGLEFDVLM 193
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 7e-05
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 18/96 (18%)
Query: 71 DVSMIDGEDDKTSADYY---FDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVL 127
+ M DD T +Y +Y+ L + L +L
Sbjct: 2 EPDMTQAFDDDT-LRFYRGNATAYAERQPRSATLTKFLG------------ELPAGAKIL 48
Query: 128 DVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQ 162
++G G G + AG V A + S +A A +
Sbjct: 49 ELGCGAGYQAEAMLAAG-FDVDATDGSPELAAEASR 83
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} Length = 215 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 7e-05
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 126 VLDVGAGTG----ILSLFCAKAGAAHVYAVEC-SQMANMAKQIVEANGFSNVITVL 176
VL++G G G + + + G V ++E ++A A++ + G+ NVI ++
Sbjct: 81 VLEIGTGCGYHAAVTAEIVGEDG--LVVSIERIPELAEKAERTLRKLGYDNVIVIV 134
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 7e-05
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 8/102 (7%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIE 184
+LD G G G + + +K G V + + + AKQ + G + +
Sbjct: 50 ILDAGCGQGRIGGYLSKQG-HDVLGTDLDPILIDYAKQDFPE------ARWVVGDLSVDQ 102
Query: 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
+ T D+I+S L E+ L + L DG +
Sbjct: 103 ISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAV 144
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 1e-04
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 126 VLDVGAGTGILSLFCAKA-GAAHVYAVECSQMA-NMAKQIVEANGFSNV--ITVLKGKIE 181
++D+G G G++ L A V V+ S MA ++ VE N + +
Sbjct: 226 IVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNAL 285
Query: 182 EIELPVTKVDIIIS 195
+ + + ++
Sbjct: 286 S-GVEPFRFNAVLC 298
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 2e-04
Identities = 24/178 (13%), Positives = 52/178 (29%), Gaps = 11/178 (6%)
Query: 54 AAPVDGTAIEDEAMCDADVSMIDGED--DKTSADY--YFDSYSHFGIHEEMLKDVVRTKS 109
++ + E + D + + Y H I + +
Sbjct: 11 SSGLVPRGSTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGH--ISSIDINSSRKF-- 66
Query: 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVE-CSQMANMAKQIVEANG 168
Q + + LD GAG G ++ V V+ AK + G
Sbjct: 67 LQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG 126
Query: 169 FSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
+++ D+I +W+ L +++ + + L +GI++
Sbjct: 127 KRVR-NYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCK-GSLRPNGIIV 182
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Length = 317 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 126 VLDVGAGTG----ILSLFCAKAGAAHVYAVEC-SQMANMAKQIVEANGFSNVITVL 176
VL++G GTG ++S + G V +VE ++ +AK+ VE G NVI V
Sbjct: 79 VLEIGGGTGYNAAVMSRVVGEKG--LVVSVEYSRKICEIAKRNVERLGIENVIFVC 132
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* Length = 336 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 176
K + + VV+D+ AG G S+ A A +YA++ + A + K+ ++ N + I +
Sbjct: 191 KKVSLNDVVVDMFAGVGPFSI--ACKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPI 248
Query: 177 KG 178
Sbjct: 249 LS 250
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Length = 210 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 2e-04
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
Query: 122 KDKVVLDVGAGTG----ILSLFCAKAGAAHVYAVEC-SQMANMAKQIVEANGFSNVITVL 176
VL++G G+G IL+ HV +VE + A++ ++ NV T
Sbjct: 77 PQSRVLEIGTGSGYQTAILAHL-----VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRH 131
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 2e-04
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGF 169
VL+ G G G + A A + S ++ +A+
Sbjct: 52 VLEAGCGHGPDAARFGPQA-ARWAAYDFSPELLKLARANAPHADV 95
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 3e-04
Identities = 11/81 (13%), Positives = 31/81 (38%), Gaps = 6/81 (7%)
Query: 124 KVVLDVGAGTGILS-LFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSN----VITVLK 177
+ V+D+G G G L + + + V+ S + +A++ ++ + +++
Sbjct: 31 RRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQ 90
Query: 178 GKIEEIELPVTKVDIIISEWM 198
G + + D +
Sbjct: 91 GALTYQDKRFHGYDAATVIEV 111
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* Length = 433 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 3e-04
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKI 180
+ VLD+ G G +L A AA V VE + +Q NG NV T +
Sbjct: 286 PEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQNV-TFYHENL 343
Query: 181 EEI 183
EE
Sbjct: 344 EED 346
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 3e-04
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKI 180
+ + VLD+GAG G L+L A+ G A V VE + ++ +EAN L +
Sbjct: 233 RGRQVLDLGAGYGALTLPLARMG-AEVVGVEDDLASVLSLQKGLEANALKA--QALHSDV 289
Query: 181 EEIELPVTKVDIIIS 195
+E + DII++
Sbjct: 290 DEALTEEARFDIIVT 304
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 4e-04
Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 28/124 (22%)
Query: 78 EDDKTSADYYFDSYS-----HFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAG 132
+ F+ + F +H ++ K L + +++G G
Sbjct: 7 HHHHHHMWHIFERFVNEYERWFLVHRFAYLSELQAV---------KCLLPEGRGVEIGVG 57
Query: 133 TGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191
TG ++ VE S +MA +A++ + VLKG E + L D
Sbjct: 58 TGRFAVPLKI-----KIGVEPSERMAEIARK--------RGVFVLKGTAENLPLKDESFD 104
Query: 192 IIIS 195
+
Sbjct: 105 FALM 108
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Length = 230 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 4e-04
Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 11/109 (10%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQMANMAKQIVE-ANGFSNVITVL--K 177
+D +L +GA G A VYA+E + + +++++ N+I +L
Sbjct: 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYA--PRIMRELLDACAERENIIPILGDA 131
Query: 178 GKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
K +E V KVD+I + N ++ +L G +
Sbjct: 132 NKPQEYANIVEKVDVIYEDV-----AQPNQAEILIKNAKWFLKKGGYGM 175
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 Length = 201 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 4e-04
Identities = 20/158 (12%), Positives = 45/158 (28%), Gaps = 40/158 (25%)
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKI 180
LD AG+G L A V +E V LK +
Sbjct: 52 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELD---------------KTVANQLKKNL 96
Query: 181 EEIELPVTKVDII---ISEWMGYF-------LLF------ENMLNTVLY--ARDKWLVDD 222
+ ++ + ++I +++ ++F N+ + + WL +
Sbjct: 97 QTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPN 156
Query: 223 GIV-------LPDKASLYLTAIEDAEYKDDKIEFWNNV 253
++ P T +++ + N+
Sbjct: 157 ALIYVETEKDKPLITPENWTLLKEKTTGIVSYRLYQNL 194
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 5e-04
Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 115 YQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEA-NGFSNV 172
Y+++F+ + V+D+ G GI + + +E + + A A+ +
Sbjct: 86 YKSRFIREGTKVVDLTGGLGIDFIALMSKA-SQGIYIERNDETAVAARHNIPLLLNEGKD 144
Query: 173 ITVLKGKIEEI--ELPVTKVDIIISEWM 198
+ +L G +E + D I +
Sbjct: 145 VNILTGDFKEYLPLIKTFHPDYIYVDPA 172
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* Length = 382 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITV 175
F+ + LDV + G +L G V AV+ S A A++ NG NV +
Sbjct: 208 FRGERALDVFSYAGGFAL-HLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVL 262
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 5e-04
Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVLKG 178
+ +++ D+G G+G +S+ AG +E ++ ++ G S + ++G
Sbjct: 53 PRRGELLWDIGGGSGSVSVEWCLAG-GRAITIEPRADRIENIQKNIDTYGLSPRMRAVQG 111
Query: 179 KIEEI--ELP 186
+LP
Sbjct: 112 TAPAALADLP 121
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 Length = 254 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 6e-04
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 6/87 (6%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGK 179
+ +D+G G + + A E M N AK+ VE N S++I V+K
Sbjct: 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVP 124
Query: 180 IEEIELPVTKVDIIISEWMGYFLLFEN 206
+ + + + + Y N
Sbjct: 125 QKTLLMD----ALKEESEIIYDFCMCN 147
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 405 | |||
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 100.0 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 100.0 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 100.0 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 100.0 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 100.0 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 100.0 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 100.0 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 100.0 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 100.0 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.69 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.69 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.68 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.67 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.66 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.66 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.66 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.66 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.65 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.65 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.65 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.65 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.64 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.64 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.64 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.64 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.63 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.63 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.63 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.62 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.62 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.61 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.61 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.61 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.6 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.6 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.6 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.6 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.6 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.6 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.6 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.6 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.6 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.6 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.6 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.6 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.6 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.6 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.59 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.59 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.59 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.59 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.59 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.59 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.58 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.58 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.58 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.58 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.58 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.58 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.58 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.58 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.57 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.57 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.57 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.57 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.56 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.56 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.56 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.56 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.56 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.56 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.56 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.55 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.55 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.55 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.55 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.55 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.55 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.54 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.54 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.54 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.54 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.53 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.53 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.53 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.53 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.53 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.53 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.53 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.52 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.52 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.52 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.52 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.52 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.52 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.51 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.51 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.51 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.51 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.51 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.51 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.51 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.51 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.51 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.51 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.51 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.51 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.5 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.5 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.5 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.5 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.5 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.5 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.5 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.49 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.49 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.49 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.49 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.49 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.49 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.48 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.48 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.48 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.48 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.48 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.48 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.47 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.47 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.47 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.47 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.46 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.46 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.46 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.46 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.46 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.45 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.45 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.45 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.45 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.45 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.45 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.44 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.44 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.44 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.44 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.44 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.43 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.43 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.43 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.42 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.42 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.42 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.42 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.42 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.41 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.41 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.41 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.41 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.41 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.41 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.4 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.4 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.4 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.4 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.4 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.4 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.39 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.39 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.39 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.39 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.39 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.39 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.39 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.38 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.38 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.38 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.38 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.38 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.38 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.38 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.38 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.38 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.38 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.37 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.37 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.37 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.37 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.36 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.36 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.36 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.35 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.35 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.35 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.35 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.35 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.35 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.34 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.34 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.34 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.34 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.34 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.34 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.34 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.34 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.33 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.33 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.32 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.32 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.32 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.32 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.32 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.31 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.31 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.31 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.3 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.29 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.28 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.28 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.27 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.27 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.27 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.26 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.25 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.25 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.24 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.24 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.24 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.24 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.23 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.23 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.22 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.21 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.21 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.21 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.2 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.2 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.2 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.2 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.2 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.19 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.19 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.19 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.17 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.14 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.14 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.14 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.13 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.12 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.12 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.11 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.1 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.1 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.09 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.09 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.09 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.06 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.06 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.05 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.04 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.03 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.02 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.01 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.01 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.95 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.95 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.93 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.88 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.87 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.87 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.86 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.84 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.83 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.77 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.75 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.71 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.7 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.57 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.57 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.55 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.55 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.49 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.42 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.4 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.4 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.39 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.34 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.3 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.21 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.21 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.19 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.14 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.05 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.96 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.92 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.84 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.75 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.55 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.52 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.38 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.32 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.28 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.17 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 97.04 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.71 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 96.68 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.54 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.53 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 96.38 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 96.22 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 96.17 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 96.16 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 96.11 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.98 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.95 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.93 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 95.82 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 95.79 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 95.75 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 95.73 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 95.57 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.57 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 95.54 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 95.52 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 95.43 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 95.41 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 95.39 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 95.35 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 95.33 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 95.31 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 95.3 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 95.28 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 95.27 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 95.23 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 95.09 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 94.99 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 94.97 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 94.96 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.93 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 94.88 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 94.85 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 94.83 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 94.81 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 94.81 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 94.7 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 94.61 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 94.55 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 94.53 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 94.47 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 94.41 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 94.26 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 94.23 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 94.21 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 94.07 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 93.96 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 93.89 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 93.78 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 93.7 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 93.69 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 93.68 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 93.6 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 93.51 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 93.47 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 93.37 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 93.36 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 93.31 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 93.24 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 93.16 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 93.07 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 92.97 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 92.72 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 92.64 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 92.47 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 92.43 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 92.21 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 92.16 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 92.12 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 92.02 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 91.96 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 91.9 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 91.89 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 91.74 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 91.5 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 91.41 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 91.17 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 91.02 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 90.87 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 90.79 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 90.77 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 90.67 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 90.51 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 90.36 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 90.35 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 90.31 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 90.23 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 90.02 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 90.0 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 89.97 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 89.97 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 89.96 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 89.78 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 89.75 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 89.36 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 89.23 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 89.18 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 89.05 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 88.98 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 88.8 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 88.79 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 88.78 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 88.73 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 88.53 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 88.43 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 88.2 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 88.13 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 88.1 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 88.02 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 87.91 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 87.7 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 87.25 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 87.19 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 87.06 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 86.82 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 86.63 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 86.57 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 86.53 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 86.53 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 86.13 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 85.94 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 85.82 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 85.75 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 85.71 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 85.65 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 85.53 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 85.5 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 85.45 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 85.18 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 85.08 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 85.06 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 85.04 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 85.0 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 84.96 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 84.91 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 84.86 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 84.83 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 84.75 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 84.7 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 84.63 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 84.6 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 84.52 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 84.32 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 84.24 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 84.24 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 84.21 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 84.15 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 84.14 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 84.12 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 83.7 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 83.67 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 83.6 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 83.47 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 83.29 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 83.22 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 83.17 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 83.16 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 83.02 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 82.97 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 82.91 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 82.89 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 82.87 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 82.86 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 82.63 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 82.6 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 82.55 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 82.5 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 82.45 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 82.33 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 82.31 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 82.21 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 82.16 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 82.11 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 81.88 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 81.76 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 81.74 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 81.68 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 81.64 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 81.57 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 81.46 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 81.3 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 80.97 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 80.86 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 80.81 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 80.74 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 80.71 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 80.57 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 80.41 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 80.29 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 80.22 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 80.18 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 80.07 |
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-62 Score=475.51 Aligned_cols=320 Identities=38% Similarity=0.710 Sum_probs=287.2
Q ss_pred CccccccccccCchhhhHHhhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHHHHH
Q 015534 81 KTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMA 160 (405)
Q Consensus 81 ~~~~~~~~~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a 160 (405)
..++..||++|+++++|..||+|..|+..|.++|.++....+|++|||||||+|++++++|++|+++|+|||.|+|++.|
T Consensus 42 ~~~d~~Yf~sY~~~~iH~~ML~D~~Rt~aY~~Ai~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~a 121 (376)
T 4hc4_A 42 RERDQLYYECYSDVSVHEEMIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQA 121 (376)
T ss_dssp -------CCCHHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHH
T ss_pred ccchhhhhhhccCcHHHHHHhCCHHHHHHHHHHHHhCHHhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHHH
Confidence 34567899999999999999999999999999999887788999999999999999999999999999999998888999
Q ss_pred HHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCceeEEEEcccc
Q 015534 161 KQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDA 240 (405)
Q Consensus 161 ~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~ 240 (405)
+++++.|++.++|++++++++++.++ ++||+||++++++++.++.+++.++.++.++|||||.++|+.+++|+++++++
T Consensus 122 ~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~~atly~apie~~ 200 (376)
T 4hc4_A 122 REVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASAELFIVPISDQ 200 (376)
T ss_dssp HHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCH
T ss_pred HHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeecccccccccchhhhHHHHHHhhCCCCceECCccceEEEEEeccc
Confidence 99999999999999999999999888 89999999999999999999999999999999999999999999999999985
Q ss_pred ccccccccccccc---ccccchhhhhhhc------cCCeEEeeCCCcccccceeeeEeeCCCCCCCC---CceeeeEEEE
Q 015534 241 EYKDDKIEFWNNV---YGFDMSCIKKQAM------MEPLVDTVDQNQIVTNCQLLKTMDISKMGPGD---ASFTAPFKLV 308 (405)
Q Consensus 241 ~~~~~~~~~w~~~---~g~~~~~~~~~~~------~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~~~---~~~~~~~~~~ 308 (405)
.+ .....+|.++ ||||++++..... .+|+++.+.+..+|++|+.++.|||.+...+. ..+...|.+.
T Consensus 201 ~l-~~~i~~w~~v~~~yGfd~s~~~~~~~~~~~~~~e~~v~~~~~~~~Ls~p~~i~~~D~~~~~~~~~~~~~~~~~f~~~ 279 (376)
T 4hc4_A 201 ML-EWRLGFWSQVKQHYGVDMSCLEGFATRCLMGHSEIVVQGLSGEDVLARPQRFAQLELSRAGLEQELEAGVGGRFRCS 279 (376)
T ss_dssp HH-HHHHHGGGGHHHHHSCCCGGGHHHHHHHHHSSCEEEEECCCGGGBCSCCEEEEEEETTCTTHHHHHHHCEEEEEEEE
T ss_pred hh-hhhhcchhccccccCcCchhhhhhhhhhhcccCceEEEeecccccccCCEEEEEEECCCCCccccccccceeEEEEE
Confidence 44 3456789876 9999999987653 46888888899999999999999999876542 3467788999
Q ss_pred EeecceEeEEEEEEEEEEcCC--CceeEEecCCCCCCCCeeeEEEecCCceecCCCCEEEEEEEEeeCCCCCceEEEEEE
Q 015534 309 AQRNDYIHALVAYFDVTFTKC--HKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLK 386 (405)
Q Consensus 309 ~~~~g~~~g~~~wf~~~l~~~--~~~~~lst~p~~~~~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~ 386 (405)
+.++|++|||++||++.|+++ +.++.|||+|..+.|||+|++|+|++|+.|++|++|+++++++++.+|+|+++|+++
T Consensus 280 ~~~~g~vhg~~~WFd~~f~~~~~~~~v~lST~P~~~~THW~Q~v~~L~~Pi~V~~G~~I~g~i~~~~~~~n~R~~~i~i~ 359 (376)
T 4hc4_A 280 CYGSAPMHGFAIWFQVTFPGGESEKPLVLSTSPFHPATHWKQALLYLNEPVQVEQDTDVSGEITLLPSRDNPRRLRVLLR 359 (376)
T ss_dssp CCSSEEEEEEEEEEEEEECCCC--CCEEEECCTTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSCTTSEEEEEE
T ss_pred ecCCcEEEEEEEEEEEEecCCCCCCceEEeCCCCcCCCceeeEEEEeCCceEeCCCCEEEEEEEEEECCCCCceeEEEEE
Confidence 999999999999999999752 356899999999999999999999999999999999999999999999999999999
Q ss_pred EEEcceeeeecceEEeeeC
Q 015534 387 YSLQGRHSAISRIQYYKMR 405 (405)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~ 405 (405)
|++.++..+ ++.|+|+
T Consensus 360 ~~~~~~~~~---~~~~~~~ 375 (376)
T 4hc4_A 360 YKVGDQEEK---TKDFAME 375 (376)
T ss_dssp EEETTSCCE---EEEEEEC
T ss_pred EEeCCCCcc---eEEEeCC
Confidence 999987644 5899985
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-56 Score=432.86 Aligned_cols=327 Identities=60% Similarity=1.027 Sum_probs=298.8
Q ss_pred CCCccccccccccCchhhhHHhhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHHH
Q 015534 79 DDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMAN 158 (405)
Q Consensus 79 ~~~~~~~~~~~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~~ 158 (405)
+.+...+.||+.|+.+.+|..|++|..|...|.++|.......++.+|||||||+|.++..+++.|+++|+|+|+|+|++
T Consensus 23 ~~~~~~~~yf~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~ 102 (349)
T 3q7e_A 23 EDMTSKDYYFDSYAHFGIHEELLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISD 102 (349)
T ss_dssp --------------CCHHHHHHHHCHHHHHHHHHHHHTCHHHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHH
T ss_pred cccchHHHHHHhhhhhHHHHHHhccHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHH
Confidence 34556688999999999999999999999999999988777788999999999999999999999888999999999999
Q ss_pred HHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCceeEEEEcc
Q 015534 159 MAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIE 238 (405)
Q Consensus 159 ~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~ 238 (405)
.|++++..++++++++++.+|+++++++.++||+|+++++++++.++..+..++.++.++|||||+++|..++.+..++.
T Consensus 103 ~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~ 182 (349)
T 3q7e_A 103 YAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIE 182 (349)
T ss_dssp HHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEEC
T ss_pred HHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEccccceEEEeeec
Confidence 99999999999888999999999998877899999999988888888999999999999999999999999999999999
Q ss_pred cccccccccccccccccccchhhhhhhccCCeEEeeCCCcccccceeeeEeeCCCCCCCCCceeeeEEEEEeecceEeEE
Q 015534 239 DAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHAL 318 (405)
Q Consensus 239 ~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 318 (405)
...+......+|.+++||+++++.+.+..+|+++.+++..++++|+.+..+|+.+...+++.+..++++.+.++|.+|||
T Consensus 183 ~~~~~~~~~~~w~~~~G~d~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~dl~~~~~~~l~~~~~~~~~~~~~~~~~g~ 262 (349)
T 3q7e_A 183 DRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHAL 262 (349)
T ss_dssp CHHHHHHHTGGGGCBTTBCCGGGHHHHHTSCEEECCCGGGEEEEEEEEEEEETTTCCGGGGSEEEEEEEEBCSSEEEEEE
T ss_pred ChhhhhhhhcccccccCcchHHHhHhhhcCcEEEEEChhhEecccEEEEEEEcccCchhhcceeeeEEEEEccCCEEEEE
Confidence 98888888889999999999999999999999999999999999999999999999888888899999999999999999
Q ss_pred EEEEEEEEcCCCceeEEecCCCCCCCCeeeEEEecCCceecCCCCEEEEEEEEeeCCCCCceEEEEEEEEEcceeeeecc
Q 015534 319 VAYFDVTFTKCHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISR 398 (405)
Q Consensus 319 ~~wf~~~l~~~~~~~~lst~p~~~~~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 398 (405)
++||++.|++++.++.+||+|..+.|||+|++|+|++|+.|++|++|+++++++++++|+|+++|.++|++.|+..++.+
T Consensus 263 ~~~Fd~~~~~~~~~v~lst~P~~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 342 (349)
T 3q7e_A 263 VAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSC 342 (349)
T ss_dssp EEEEEEECTTSSSCCEEECSTTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSCSSCEEEEEEEEEECSSCEEEE
T ss_pred EEEEEEEecCCCCccEEECCCCcCCCcceeEEEEECCceEeCCCCEEEEEEEEEECCCCCeeEEEEEEEEeCCccccccc
Confidence 99999999976678999999999999999999999999999999999999999999999999999999999999988889
Q ss_pred eEEeeeC
Q 015534 399 IQYYKMR 405 (405)
Q Consensus 399 ~~~~~~~ 405 (405)
++.|+||
T Consensus 343 ~~~~~~~ 349 (349)
T 3q7e_A 343 STDYRMR 349 (349)
T ss_dssp EEEEEEC
T ss_pred CceEecC
Confidence 9999997
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-56 Score=427.50 Aligned_cols=321 Identities=51% Similarity=0.907 Sum_probs=300.9
Q ss_pred cccccccCchhhhHHhhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHHHHHHHHH
Q 015534 85 DYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIV 164 (405)
Q Consensus 85 ~~~~~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~ 164 (405)
+.||+.|+++.+|..|++|..|+..|.++|.+.....++.+|||||||+|.+++.+++.|+.+|+|+|+|+|++.|++++
T Consensus 1 d~Yf~~y~~~~~~~~ml~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~ 80 (328)
T 1g6q_1 1 DYYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELV 80 (328)
T ss_dssp CCCCCCCCCHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHH
T ss_pred CchhhhhcCchHHHHHhcCHHHHHHHHHHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHH
Confidence 35899999999999999999999999999987777778899999999999999999999888999999999899999999
Q ss_pred HHcCCCCcEEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCceeEEEEcccccccc
Q 015534 165 EANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKD 244 (405)
Q Consensus 165 ~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~ 244 (405)
..+++.++++++.+|+.+++++.++||+|+++++++++.++..+..++.++.++|||||+++|+.+++++.++....+..
T Consensus 81 ~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~ 160 (328)
T 1g6q_1 81 ELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKD 160 (328)
T ss_dssp HHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHHHH
T ss_pred HHcCCCCCEEEEECchhhccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEeeceEEEEEecCchhhh
Confidence 99999889999999999988777899999999988888888889999999999999999999999999999998877776
Q ss_pred cccccccccccccchhhhhhhccCCeEEeeCCCcccccceeeeEeeCCCCCCCCCceeeeEEEEEeecceEeEEEEEEEE
Q 015534 245 DKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDV 324 (405)
Q Consensus 245 ~~~~~w~~~~g~~~~~~~~~~~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~ 324 (405)
....+|.+.+||+++.+.+.+...|+++.+++..++++|+.++++||.+...+++.+...+++.+.++|.+|||++||++
T Consensus 161 ~~~~~w~~~~gf~~~~~~~~~~~~~~v~~~~~~~~ls~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wfd~ 240 (328)
T 1g6q_1 161 EKLNYWQDVYGFDYSPFVPLVLHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDLAFKSNFKLTAKRQDMINGIVTWFDI 240 (328)
T ss_dssp HHHHHTTCBTTBCCTTHHHHHTTSCEEECCCGGGBCBCCEEEEEEETTTCCGGGGSEEEEEEEEBCSSCEEEEEEEEEEE
T ss_pred hhhcccccccCcChHHHhhhhhcCCeEEEeccceeecCCEEEEEEECCCCChhHhceeeeEEEEEecCcEEEEEEEEEEE
Confidence 67788999999999999999999999999999999999999999999998888888889999999999999999999999
Q ss_pred EEcC--CCceeEEecCCCCCCCCeeeEEEecCCceecCCCCEEEEEEEEeeCCCCCceEEEEEEEEEcceee-----eec
Q 015534 325 TFTK--CHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHS-----AIS 397 (405)
Q Consensus 325 ~l~~--~~~~~~lst~p~~~~~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-----~~~ 397 (405)
+|++ +++++.+||+|..+.+||+|++|+|++|+.|++|++|+++++++++..++|+++|.++|+++|... +..
T Consensus 241 ~~~~~~~~~~v~lst~P~~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 320 (328)
T 1g6q_1 241 VFPAPKGKRPVEFSTGPHAPYTHWKQTIFYFPDDLDAETGDTIEGELVCSPNEKNNRDLNIKISYKFESNGIDGNSRSRK 320 (328)
T ss_dssp ECCCCTTSCCCEEECSTTSCCCTTCEEEEEEEEEEECCTTCEEEEEEEEEEETTEEEEEEEEEEEEEECCSSTHHHHCEE
T ss_pred EcCCCCCCCceEEECCCCcCCCcceeEEEEeCCceecCCCCEEEEEEEEEECCCCCceEEEEEEEEecCccCcccccccc
Confidence 9986 566899999999999999999999999999999999999999999999999999999999999888 788
Q ss_pred ceEEeeeC
Q 015534 398 RIQYYKMR 405 (405)
Q Consensus 398 ~~~~~~~~ 405 (405)
++|.|+||
T Consensus 321 ~~~~~~~~ 328 (328)
T 1g6q_1 321 NEGSYLMH 328 (328)
T ss_dssp EEEEEEEC
T ss_pred cceeEEeC
Confidence 89999997
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-52 Score=403.02 Aligned_cols=313 Identities=48% Similarity=0.854 Sum_probs=288.2
Q ss_pred cccccccCchhhhHHhhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHHHHHHHHH
Q 015534 85 DYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIV 164 (405)
Q Consensus 85 ~~~~~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~ 164 (405)
..||+.|..+.+|..|++|..|+..|.++|.......++.+|||||||+|.+++.+++.|+.+|+|+|+|+|++.|++++
T Consensus 27 ~~Y~~~y~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~ 106 (340)
T 2fyt_A 27 GVYFSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDII 106 (340)
T ss_dssp ---CCGGGSHHHHHHHHTCHHHHHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHH
T ss_pred hhHHHhhcchhHHHHHhcCHHHHHHHHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHH
Confidence 55999999999999999999999999999998887888999999999999999999999888999999999899999999
Q ss_pred HHcCCCCcEEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCceeEEEEcccccccc
Q 015534 165 EANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKD 244 (405)
Q Consensus 165 ~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~ 244 (405)
..+++.++++++.+|+.+++++.++||+|+++++++++.++..+..++.++.++|||||+++|+.+++++.++....+..
T Consensus 107 ~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~ 186 (340)
T 2fyt_A 107 RLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHA 186 (340)
T ss_dssp HHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHHHH
T ss_pred HHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEcccceEEEEEecchhHhh
Confidence 99999888999999999988877899999999988888888899999999999999999999999999999998877777
Q ss_pred cccccccccccccchhhhhhhccCCeEEeeCCCcccccceeeeEeeCCCCCCCCCceeeeEEEEEeecceEeEEEEEEEE
Q 015534 245 DKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDV 324 (405)
Q Consensus 245 ~~~~~w~~~~g~~~~~~~~~~~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~ 324 (405)
....+|.+.+||+++.+.+.+...|+++.+.+..++++|+.++++||.+...++..+...+.+.+.++|.+|||++||++
T Consensus 187 ~~~~~w~~~~g~~~~~~~~~~~~~~~v~~~~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~wfd~ 266 (340)
T 2fyt_A 187 DRIAFWDDVYGFKMSCMKKAVIPEAVVEVLDPKTLISEPCGIKHIDCHTTSISDLEFSSDFTLKITRTSMCTAIAGYFDI 266 (340)
T ss_dssp HHTGGGGCBTTBCCGGGHHHHTTBCEEECCCGGGBCBCCEEEEEEETTTCCGGGGSEEEEEEEEBCSCEEEEEEEEEEEE
T ss_pred hhhcccccccCcChHHHHHhhhcCcEEEEechhhcccCCEEEEEEECCCCcccccceEeeEEEEEccCcEEEEEEEEEEE
Confidence 77889999999999999998889999998888899999999999999998887777888999999999999999999999
Q ss_pred EEc-CCCceeEEecCCCCCCCCeeeEEEecCCceecCCCCEEEEEEEEeeCCCCCceEEEEEEEEEcceeeeecceEEee
Q 015534 325 TFT-KCHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYK 403 (405)
Q Consensus 325 ~l~-~~~~~~~lst~p~~~~~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 403 (405)
.|+ ++.+++.+||+|..+.+||+|++|+|++|+.|++|++|+++++++++..+.|+++|.++|.. ++|.|+
T Consensus 267 ~~~~~~~~~v~lst~P~~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~--------~~~~~~ 338 (340)
T 2fyt_A 267 YFEKNCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSVKAGEALKGKVTVHKNKKDPRSLTVTLTLNN--------STQTYG 338 (340)
T ss_dssp EECTTCSSCEEEECSTTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSCTTSEEEEEEETT--------EEEEEE
T ss_pred EeecCCCCCEEEECCCCcCCCccccEEEEeCCceEcCCCCEEEEEEEEEECCCCCceEEEEEEEEc--------ceEEEe
Confidence 994 44568999999999999999999999999999999999999999999999999999999854 258888
Q ss_pred eC
Q 015534 404 MR 405 (405)
Q Consensus 404 ~~ 405 (405)
||
T Consensus 339 ~~ 340 (340)
T 2fyt_A 339 LQ 340 (340)
T ss_dssp EC
T ss_pred cC
Confidence 86
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-51 Score=402.97 Aligned_cols=314 Identities=33% Similarity=0.618 Sum_probs=283.9
Q ss_pred CccccccccccCchhhhHHhhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHHHHH
Q 015534 81 KTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMA 160 (405)
Q Consensus 81 ~~~~~~~~~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a 160 (405)
..+.+.||+.|+.+..|..|++|..++..|.++|.......++.+|||||||+|.+++.+++.|+++|+|+|+|+|++.|
T Consensus 22 ~~~~~~yf~~ya~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a 101 (376)
T 3r0q_C 22 EVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHA 101 (376)
T ss_dssp ------CTTGGGCHHHHHHHHTCHHHHHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHH
T ss_pred cccHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHH
Confidence 44558899999999999999999999999999999888888999999999999999999999988899999999999999
Q ss_pred HHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCceeEEEEcccc
Q 015534 161 KQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDA 240 (405)
Q Consensus 161 ~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~ 240 (405)
++++..+++.++++++++|++++.++ ++||+|+++++++++.++..+..++.++.++|||||+++|+.+++|..++...
T Consensus 102 ~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~ 180 (376)
T 3r0q_C 102 RALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKSN 180 (376)
T ss_dssp HHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEEEEEEEECCT
T ss_pred HHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCeEEEEeecch
Confidence 99999999998999999999999887 89999999998899988888999999999999999999999999999999877
Q ss_pred ccccccc----------ccc---cccccccchhhhhh--------hccCCeEEeeCCCcccccceeeeEeeCCCCCCCCC
Q 015534 241 EYKDDKI----------EFW---NNVYGFDMSCIKKQ--------AMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDA 299 (405)
Q Consensus 241 ~~~~~~~----------~~w---~~~~g~~~~~~~~~--------~~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~ 299 (405)
.+..... .|| .+.+|++++.+.+. ...+|+++.+.+..++++|+.++++||.++..+++
T Consensus 181 ~~~~~~~~~~~~~~~W~~fw~~~~~~~G~d~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~lt~~~~~~~~d~~~~~~~~l 260 (376)
T 3r0q_C 181 IADRKRNDFDGAMADWHNFSDEIKSYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTASVSEI 260 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCGGGHHHHHHHHHHHHTSBCEEECCCGGGBCBCCEEEEEEETTTCCGGGT
T ss_pred HHhhhhhhhhhhhhhhhhhhhccCccccCChHHHHhhhhhhhhhhcccCceEEEEChHHccCCCeEEEEEEcCcCCHHHh
Confidence 6554433 678 78999999999887 66889999999999999999999999999988887
Q ss_pred c-eeeeEEEEE-eecceEeEEEEEEEEEEcCC-----CceeEEecCCC-CCCCCeeeEEEecCCceecCCCCEEEEEEEE
Q 015534 300 S-FTAPFKLVA-QRNDYIHALVAYFDVTFTKC-----HKLMGFSTGPK-SRATHWKQTVLYLEDVLTICEGEAISGSLTV 371 (405)
Q Consensus 300 ~-~~~~~~~~~-~~~g~~~g~~~wf~~~l~~~-----~~~~~lst~p~-~~~~~W~q~v~~l~~p~~v~~g~~i~~~~~~ 371 (405)
. +..++++.+ .++|.+|||++||+++|++. +.++.|||+|. .+.+||+|++|+|++|+.|++|++|++++.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~g~~~wfd~~~~~~~~~~~~~~v~lSt~P~~~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~ 340 (376)
T 3r0q_C 261 EEVRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTAPSEQHCTHWGQQVFIMSNPINVEEGDNLNLGLLM 340 (376)
T ss_dssp SEEEEEEEEBCSCSCEEEEEEEEEEEEEEEEETTEEEEEEEEEECCCCSSCCCTTCEEEEEEEEEEEECTTCEEEEEEEE
T ss_pred cccccceEEEEeccCceEEEEEEEEEEEecCCccCCCCCccEEECCCCcCCCCceeeEEEEECCceecCCCCEEEEEEEE
Confidence 5 788999998 99999999999999999742 23699999998 4689999999999999999999999999999
Q ss_pred eeCCCCCceEEEEEEEEEcceeee
Q 015534 372 APNKKNPRDVDIMLKYSLQGRHSA 395 (405)
Q Consensus 372 ~~~~~~~r~~~~~~~~~~~~~~~~ 395 (405)
+++++++|+++|.++|.+.++...
T Consensus 341 ~~~~~~~r~~~~~~~~~~~~~~~~ 364 (376)
T 3r0q_C 341 SRSKENHRLMEIELNCEIKEASGN 364 (376)
T ss_dssp EECSSCTTSEEEEEEEEEECSSSC
T ss_pred EECCCCCeeEEEEEEEEecCcCCC
Confidence 999999999999999999887753
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-45 Score=371.89 Aligned_cols=285 Identities=20% Similarity=0.287 Sum_probs=246.6
Q ss_pred hhhHHhhcCHHhHHHHHHHHHhcc--------CCCCCCEEEEEcCCCcHHHHHHHHcCC---C--eEEEEechHHHHHHH
Q 015534 95 GIHEEMLKDVVRTKSYQNVIYQNK--------FLFKDKVVLDVGAGTGILSLFCAKAGA---A--HVYAVECSQMANMAK 161 (405)
Q Consensus 95 ~~~~~~l~d~~r~~~~~~~i~~~~--------~~~~~~~VLDiGcG~G~l~~~la~~g~---~--~V~~vD~s~~~~~a~ 161 (405)
..++.+-+|..++..|.+||.++. ....+.+|||||||+|.|+.+++++|+ . +|+|||.|+++..|+
T Consensus 322 ~tYevFEkD~vKy~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~ 401 (637)
T 4gqb_A 322 QTYEVFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTL 401 (637)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHH
T ss_pred hhhhhhcCChhhHHHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHH
Confidence 345667889999999999997532 233456899999999999666666543 3 789999999888999
Q ss_pred HHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCceeEEEEccccc
Q 015534 162 QIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAE 241 (405)
Q Consensus 162 ~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~ 241 (405)
+....|++.++|+++++|++++.+| +++|+||+|+||+++.+|.++ .++.++.|+|||||+++|+.+++|++|++++.
T Consensus 402 ~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVSEwMG~fLl~E~ml-evL~Ardr~LKPgGimiPs~atlyiapi~~~~ 479 (637)
T 4gqb_A 402 ENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSELLGSFADNELSP-ECLDGAQHFLKDDGVSIPGEYTSFLAPISSSK 479 (637)
T ss_dssp HHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEECCCCBTTBGGGCHH-HHHHHHGGGEEEEEEEESCEEEEEEEEEECHH
T ss_pred HHHHhccCCCeEEEEeCcceeccCC-cccCEEEEEcCcccccccCCH-HHHHHHHHhcCCCcEEccccceEEEEEecCHH
Confidence 9999999999999999999999988 999999999999999999887 68899999999999999999999999999999
Q ss_pred ccccccccccccccccchhhhhhhccCCeEEeeCCCcccccceeeeEeeCCCCCC-CCCceeeeEEEEEeecceEeEEEE
Q 015534 242 YKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGP-GDASFTAPFKLVAQRNDYIHALVA 320 (405)
Q Consensus 242 ~~~~~~~~w~~~~g~~~~~~~~~~~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~ 320 (405)
++.+...+|...++++.. +..|++..+.+...+++|+.+++||+.+... .+..+...++|++.++|++|||++
T Consensus 480 l~~e~~~~~~~~~~~~~~------~~~p~Vv~~~~~~~Ls~p~~~~~fd~~~~~~~~~~~~~~~~~f~i~~~g~vhGf~~ 553 (637)
T 4gqb_A 480 LYNEVRACREKDRDPEAQ------FEMPYVVRLHNFHQLSAPQPCFTFSHPNRDPMIDNNRYCTLEFPVEVNTVLHGFAG 553 (637)
T ss_dssp HHHHHHTTCCTTSCTTGG------GGSCEECBCCSCEECSCCEEEEEEESSCCSTTCCCCEEEEEEEECCSCEEEEEEEE
T ss_pred HHHHHHhcccccccchhh------cCCcEEEEecCccccCCCEEEEEEECCCCCccccceEEEEEEEEecCCcEEEEEEE
Confidence 888888888877777542 4578888888889999999999999976543 344577889999999999999999
Q ss_pred EEEEEEcCCCceeEEecCCCC---CCCCeeeEEEecCCceecCCCCEEEEEEEEeeCCCCCceEEEEEEEEEcceeee
Q 015534 321 YFDVTFTKCHKLMGFSTGPKS---RATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSA 395 (405)
Q Consensus 321 wf~~~l~~~~~~~~lst~p~~---~~~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 395 (405)
||++.|++ ++.+||+|.. +.+||+|++|||++|+.|++||+|+++++++.+. -.||++|.++....+
T Consensus 554 wFD~~f~~---~V~LST~P~~~s~~~THW~Q~vfpL~~Pl~V~~Gd~I~~~~~R~~d~-----~kVWYEW~v~~p~~s 623 (637)
T 4gqb_A 554 YFETVLYQ---DITLSIRPETHSPGMFSWFPILFPIKQPITVREGQTICVRFWRCSNS-----KKVWYEWAVTAPVCS 623 (637)
T ss_dssp EEEEEEET---TEEEECSGGGCCTTCCSCCCEEEEEEEEEEECTTCEEEEEEEEEECS-----SEEEEEEEEEESSCC
T ss_pred EEEEEeeC---CeEEECCCCCCCCCCCcccCeEEEeCCCeEECCCCEEEEEEEEEeCC-----CceeEEEEEeCCcCc
Confidence 99999996 7999999974 3599999999999999999999999999987654 249999999887644
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-44 Score=346.13 Aligned_cols=308 Identities=37% Similarity=0.589 Sum_probs=259.8
Q ss_pred ccccccccccCchhhhHHhhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHHHHHH
Q 015534 82 TSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAK 161 (405)
Q Consensus 82 ~~~~~~~~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~ 161 (405)
.+.+.||+.|..+..|..|++|..++..|.++|.......++.+|||||||+|.++..+++.|+.+|+|+|+|++++.|+
T Consensus 10 ~~~~~y~~~y~~~~~~~~ml~d~~r~~~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~ 89 (348)
T 2y1w_A 10 SSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAE 89 (348)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTCHHHHHHHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHH
T ss_pred ccHHHHHHHHhhhhHHHHHhcchHHHHHHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHH
Confidence 34467999999999999999999999999999998888889999999999999999999999888999999999779999
Q ss_pred HHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCceeEEEEccccc
Q 015534 162 QIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAE 241 (405)
Q Consensus 162 ~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~ 241 (405)
++++.+++.++++++.+|+++++++ ++||+|+++++++++..+..+ ..+..+.++|||||.++|+.++++..++....
T Consensus 90 ~~~~~~~l~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~~~~~~~~-~~l~~~~~~LkpgG~li~~~~~~~~~~i~~~~ 167 (348)
T 2y1w_A 90 VLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERML-ESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQ 167 (348)
T ss_dssp HHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEEECCCBTTBTTTSHH-HHHHHGGGGEEEEEEEESCEEEEEEEEECCHH
T ss_pred HHHHHcCCCCcEEEEEcchhhCCCC-CceeEEEEeCchhcCChHHHH-HHHHHHHhhcCCCeEEEEecCcEEEEEecchH
Confidence 9999999988899999999998776 789999999887766655444 45556789999999999999999999988765
Q ss_pred cccc---ccccc--cccccccchhhhhhh----ccCCeEEeeCCCcccccceeeeEeeCCCCCCCCCc-eeeeEEEEEee
Q 015534 242 YKDD---KIEFW--NNVYGFDMSCIKKQA----MMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDAS-FTAPFKLVAQR 311 (405)
Q Consensus 242 ~~~~---~~~~w--~~~~g~~~~~~~~~~----~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~-~~~~~~~~~~~ 311 (405)
+..+ ...+| ...+|++++.+...+ +..|.++..+. .+...+.....+||.+...+++. ....+++.+.+
T Consensus 168 ~~~~~~~~~~~w~~~~~~g~d~~~l~~~~~~~~f~~p~~d~~~~-~~~~~~~~~~~~df~~~~~~~~~~~~~~~~~~~~~ 246 (348)
T 2y1w_A 168 LYMEQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDI-RILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLH 246 (348)
T ss_dssp HHHHHHHHHGGGCCSCBTTBCCGGGHHHHHHHHHTSCEEECCCG-GGBCBCCEEEEEETTTCCGGGGSEEEEEEEEEBSS
T ss_pred HhhhhccccCcccccccCcccHHHhhhHHHhhhccCCeEEeECC-eeecCcceEEEEECCcCChHHhceeeeeEEEEEcc
Confidence 5432 24567 367899998876654 34577775443 33444445577899988777764 56788999999
Q ss_pred cceEeEEEEEEEEEEcCCCceeEEecCCCCCCCCeeeEEEecCCceecCCCCEEEEEEEEeeCCCCCceEEEEEEEEEcc
Q 015534 312 NDYIHALVAYFDVTFTKCHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQG 391 (405)
Q Consensus 312 ~g~~~g~~~wf~~~l~~~~~~~~lst~p~~~~~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~ 391 (405)
+|.+|||++||+++|++++.++.+||+|..+.+||+|++|+|++|+.|++|++|+++++++++.++ .++++++|.+++
T Consensus 247 ~g~~~g~~~wfd~~~~~~~~~v~lSt~P~~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~--~~~~~~~~~~~~ 324 (348)
T 2y1w_A 247 SGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQ--SYDISIVAQVDQ 324 (348)
T ss_dssp CEEEEEEEEEEEEEEECSSCEEEEECCTTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECTTS--SEEEEEEEEETT
T ss_pred CcEEEEEEEEEEEEEcCCCCceEEECCCCcCCCeeeeEEEeeCCceEeCCCCEEEEEEEEEECCCC--CcEEEEEEEEcc
Confidence 999999999999999976668999999999999999999999999999999999999999998865 577788888877
Q ss_pred eee
Q 015534 392 RHS 394 (405)
Q Consensus 392 ~~~ 394 (405)
...
T Consensus 325 ~~~ 327 (348)
T 2y1w_A 325 TGS 327 (348)
T ss_dssp TCC
T ss_pred ccc
Confidence 654
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=357.89 Aligned_cols=286 Identities=17% Similarity=0.230 Sum_probs=241.0
Q ss_pred hhhHHhhcCHHhHHHHHHHHHhccCC-----CCCCEEEEEcCCCcHHHHHHHHc----C----------CCeEEEEechH
Q 015534 95 GIHEEMLKDVVRTKSYQNVIYQNKFL-----FKDKVVLDVGAGTGILSLFCAKA----G----------AAHVYAVECSQ 155 (405)
Q Consensus 95 ~~~~~~l~d~~r~~~~~~~i~~~~~~-----~~~~~VLDiGcG~G~l~~~la~~----g----------~~~V~~vD~s~ 155 (405)
..+..|.+|..|+..|.+||..+... ..++.|||||||+|.++.+++++ | +.+|+|||.|+
T Consensus 377 ~tYe~fekD~vRy~~Y~~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp 456 (745)
T 3ua3_A 377 GVYNTFEQDQIKYDVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNP 456 (745)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCH
T ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCCh
Confidence 46678999999999999999887422 12468999999999997654332 2 23999999999
Q ss_pred -HHHHHHHHHHHcCCCCcEEEEEcccccccCC-----CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 156 -MANMAKQIVEANGFSNVITVLKGKIEEIELP-----VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 156 -~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-----~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
++..++.+. .|++.++|+++.+|++++.++ .+++|+||+++||+++.+|.. +.++..+.++|||||++||+.
T Consensus 457 ~A~~~l~~~~-~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~-pe~Ld~v~r~Lkp~Gi~iP~~ 534 (745)
T 3ua3_A 457 NAIVTLKYMN-VRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELS-PECLDGVTGFLKPTTISIPQK 534 (745)
T ss_dssp HHHHHHHHHH-HHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSH-HHHHHTTGGGSCTTCEEESCE
T ss_pred HHHHHHHHHH-hcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhcc-HHHHHHHHHhCCCCcEEECCc
Confidence 555555444 489999999999999999873 489999999999999988754 557788889999999999999
Q ss_pred ceeEEEEcccccccccccccccc--ccccc-------------------chhhhhhhccCCeEEeeCCCccccc-ceeee
Q 015534 230 ASLYLTAIEDAEYKDDKIEFWNN--VYGFD-------------------MSCIKKQAMMEPLVDTVDQNQIVTN-CQLLK 287 (405)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~w~~--~~g~~-------------------~~~~~~~~~~~p~~~~~~~~~~ls~-p~~~~ 287 (405)
+++|++|+.++.++.+...++.. ++||+ +.+.....+.+|++..+.+..+|++ |++++
T Consensus 535 ~t~ylaPi~~~~l~~~v~~~~~~~~~~G~p~~g~~~P~~~~~g~~i~~~~~~~~~~a~e~PyVv~l~~~~~Ls~~pq~vf 614 (745)
T 3ua3_A 535 YTSYVKPIMSTHIHQTIKAQSIPYLSRAIPSHGRGEPELDEDEMWIQKYPQGHVRNNMDQIYVVYLSKYIPLAETTKPVF 614 (745)
T ss_dssp EEEEEEEEECHHHHHHHHTCCCCGGGTTSCCSSSCCCEECTTSCEECCCTTCHHHHHHSSCEEECCCSCEESSSSCEEEE
T ss_pred cEEEEEEecCHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccEEEeeccceecCCCCceEE
Confidence 99999999999887655554432 34552 1345667788999999999999999 99999
Q ss_pred EeeCCCCCCCCCceeeeEEEEEeecceEeEEEEEEEEEEcCCCceeEEecCCCCC---CCCeeeEEEecCCceecCCCCE
Q 015534 288 TMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKCHKLMGFSTGPKSR---ATHWKQTVLYLEDVLTICEGEA 364 (405)
Q Consensus 288 ~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~lst~p~~~---~~~W~q~v~~l~~p~~v~~g~~ 364 (405)
+||+.+....+..+...++|.+.++|.+|||++||++.|++ ++.|||+|... .+||+|++|||++|+.|++|++
T Consensus 615 tFdhp~~~~~d~~r~~~~~F~~~r~g~iHGfagwFDi~Lyk---~V~LST~P~t~s~~mThWfQtfFPL~ePL~V~~Gde 691 (745)
T 3ua3_A 615 TFEHPNFMNSSNERSDSIEFVMDRNADLMGFAGYFDLQLYK---TVMLSIEPSTHTPGMVSWFPAVIPLRDQLRVGEGDR 691 (745)
T ss_dssp EEESSCTTCCCSCEEEEEEEECCSSEEEEEEEEEEEEEEET---TEEEECSSTTCCTTCCSCCCEEEEEEEEEEECTTCE
T ss_pred EEECCCCCccccceeEEEEEEeCCCcEEEEEEEEEEEEecC---CcEEecCCCCCCCCCccceeEEEecCCceEeCCCCE
Confidence 99999988778889999999999999999999999999996 79999999875 4899999999999999999999
Q ss_pred EEEEEEEeeCCCCCceEEEEEEEEEc
Q 015534 365 ISGSLTVAPNKKNPRDVDIMLKYSLQ 390 (405)
Q Consensus 365 i~~~~~~~~~~~~~r~~~~~~~~~~~ 390 (405)
|+++++++.+. ..||++|.++
T Consensus 692 I~g~~~R~~d~-----~kVWYEW~v~ 712 (745)
T 3ua3_A 692 ISLKIDRKVDN-----TGVWYEWHVE 712 (745)
T ss_dssp EEEEEEEEEET-----TEEEEEEEEE
T ss_pred EEEEEEEEcCC-----CCEEEEEEEE
Confidence 99999976553 4699999987
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=340.45 Aligned_cols=304 Identities=36% Similarity=0.585 Sum_probs=254.7
Q ss_pred cccccccCchhhhHHhhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHHHHHHHHH
Q 015534 85 DYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIV 164 (405)
Q Consensus 85 ~~~~~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~ 164 (405)
+.|++.|+....+..|+.+..++..+.+++.......++.+|||||||+|.+++.+++.|..+|+|+|+|++++.|++++
T Consensus 121 ~~~~~~y~~~~~~~~~L~d~~~t~~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~ 200 (480)
T 3b3j_A 121 VQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLV 200 (480)
T ss_dssp CEEEEGGGCSCHHHHHHHHHHHHHHHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHH
T ss_pred hhHHHHHhhhccchhhhcChHhHHHHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHH
Confidence 46777777766688899999999999999988777778899999999999999999998888999999999889999999
Q ss_pred HHcCCCCcEEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCceeEEEEcccccccc
Q 015534 165 EANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKD 244 (405)
Q Consensus 165 ~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~ 244 (405)
..+++.++++++.+|+.+++++ ++||+|+++++++++..+..+. .+..+.++|||||.+++..++++..++....++.
T Consensus 201 ~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~~~~~~e~~~~-~l~~~~~~LkpgG~li~~~~~~~~~pi~~~~l~~ 278 (480)
T 3b3j_A 201 KSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLE-SYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYM 278 (480)
T ss_dssp HHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCHHHHTCHHHHH-HHHHGGGGEEEEEEEESCEEEEEEEEECCHHHHH
T ss_pred HHcCCCCcEEEEECchhhCccC-CCeEEEEEeCchHhcCcHHHHH-HHHHHHHhcCCCCEEEEEeceeeeeccCchHHHH
Confidence 9999988899999999998766 7899999998877776665554 4557789999999999999999999987765543
Q ss_pred c---cccccc--ccccccchhhhhhh----ccCCeEEeeCCCcccccceeeeEeeCCCCCCCCCc-eeeeEEEEEeecce
Q 015534 245 D---KIEFWN--NVYGFDMSCIKKQA----MMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDAS-FTAPFKLVAQRNDY 314 (405)
Q Consensus 245 ~---~~~~w~--~~~g~~~~~~~~~~----~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~g~ 314 (405)
+ ...+|. .++|++++.+.... +..|+++........+.+. ...+||.+...+++. ....+++.+.++|.
T Consensus 279 e~~~~~~~w~~~~~~g~dl~~l~~~~~~~~f~~pvvd~~~~~~~y~~tl-~~~~d~~~~~~~~l~~~~~~~~~~~~~~g~ 357 (480)
T 3b3j_A 279 EQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILMAKSV-KYTVNFLEAKEGDLHRIEIPFKFHMLHSGL 357 (480)
T ss_dssp HHHHHHHHHHSSCBTTBCCGGGHHHHHHHHTTSCEECCCCSTTBCSCCE-EEEEETTTCCTTTTTEEEEEEEEECSSCEE
T ss_pred HHhhccCccccccCCCcChhhhhhHHHHhccCCcEEEEeecccccchhh-hhhhhhhcCChhhhcceeeeEEEEEccCcE
Confidence 2 235663 67899998886654 3457776554444444444 468999988877764 46789999999999
Q ss_pred EeEEEEEEEEEEcCCCceeEEecCCCCCCCCeeeEEEecCCceecCCCCEEEEEEEEeeCCCCCceEEEEEEEEEccee
Q 015534 315 IHALVAYFDVTFTKCHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRH 393 (405)
Q Consensus 315 ~~g~~~wf~~~l~~~~~~~~lst~p~~~~~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 393 (405)
+|||++||+++|+++..++.+||+|..+.+||+|++|+|++|+.|++|++|+++++++++.++ +.+|+++|.+++..
T Consensus 358 ~hg~~~wFd~~~~~~~~~v~lST~P~~~~thW~q~~~~l~~p~~v~~g~~i~g~~~~~~~~~~--~~~v~~~~~~~~~~ 434 (480)
T 3b3j_A 358 VHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQ--SYDISIVAQVDQTG 434 (480)
T ss_dssp EEEEEEEEEEEEECSSCEEESSSCCSSSCCCSEEEEEEEEEEEEECTTCEEEEEEEEEECTTS--SEEEEEEEEETTTC
T ss_pred EEEEEEEEEEEEcCCCCceEEeCCCCcCCCeeeeEEEEeCCceEeCCCCEEEEEEEEEECCCC--CcEEEEEEEEccCC
Confidence 999999999999976668999999999999999999999999999999999999999998754 55788888888765
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=147.49 Aligned_cols=106 Identities=17% Similarity=0.262 Sum_probs=90.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcC---CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAG---AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g---~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (405)
..++.+|||||||+|.++..+++.. ..+|+|+|+|+ |++.|++++...+...+++++++|+.++++ +.||+|++
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~--~~~d~v~~ 145 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENASMVVL 145 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC--CSEEEEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc--ccccccee
Confidence 5788999999999999999999852 34899999999 999999999998888889999999999876 56999999
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
..+.+++ .......++.+++++|||||+++..
T Consensus 146 ~~~l~~~-~~~~~~~~l~~i~~~LkpGG~lii~ 177 (261)
T 4gek_A 146 NFTLQFL-EPSERQALLDKIYQGLNPGGALVLS 177 (261)
T ss_dssp ESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eeeeeec-CchhHhHHHHHHHHHcCCCcEEEEE
Confidence 7665544 3345568899999999999999864
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-16 Score=147.29 Aligned_cols=107 Identities=20% Similarity=0.308 Sum_probs=95.5
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
...++.+|||||||+|.++..+++.+..+|+|+|+|+ +++.|++++...+++++++++.+|+.+++++.++||+|++..
T Consensus 43 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~ 122 (267)
T 3kkz_A 43 NLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG 122 (267)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC
Confidence 3678899999999999999999998777999999999 999999999999998889999999999887778999999976
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+.+++ .+..++..+.++|||||+++...
T Consensus 123 ~~~~~----~~~~~l~~~~~~LkpgG~l~~~~ 150 (267)
T 3kkz_A 123 AIYNI----GFERGLNEWRKYLKKGGYLAVSE 150 (267)
T ss_dssp CGGGT----CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred Cceec----CHHHHHHHHHHHcCCCCEEEEEE
Confidence 54443 46789999999999999998654
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.4e-16 Score=144.01 Aligned_cols=108 Identities=18% Similarity=0.282 Sum_probs=95.0
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
....++.+|||||||+|.++..+++.+..+|+|+|+|+ +++.|++++...+++++++++.+|+.++++++++||+|++.
T Consensus 42 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 121 (257)
T 3f4k_A 42 NELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSE 121 (257)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEE
T ss_pred hcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEec
Confidence 35667889999999999999999997555999999999 99999999999999888999999999988877899999997
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
.+.+++ .+..++..+.++|||||+++...
T Consensus 122 ~~l~~~----~~~~~l~~~~~~L~pgG~l~~~~ 150 (257)
T 3f4k_A 122 GAIYNI----GFERGMNEWSKYLKKGGFIAVSE 150 (257)
T ss_dssp SCSCCC----CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ChHhhc----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 654333 46789999999999999998654
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.67 E-value=4.6e-16 Score=143.03 Aligned_cols=115 Identities=16% Similarity=0.136 Sum_probs=96.2
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc
Q 015534 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (405)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (405)
...+.......++.+|||||||+|.++..+++....+|+|+|+|+ +++.|++++...++.++++++.+|+.++++ +++
T Consensus 25 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~ 103 (256)
T 1nkv_A 25 YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEK 103 (256)
T ss_dssp HHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSC
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCC
Confidence 344444456778899999999999999999985344999999999 999999999999987789999999999877 589
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
||+|++..+.++ ..++..++..+.++|||||+++...
T Consensus 104 fD~V~~~~~~~~---~~~~~~~l~~~~r~LkpgG~l~~~~ 140 (256)
T 1nkv_A 104 CDVAACVGATWI---AGGFAGAEELLAQSLKPGGIMLIGE 140 (256)
T ss_dssp EEEEEEESCGGG---TSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred CCEEEECCChHh---cCCHHHHHHHHHHHcCCCeEEEEec
Confidence 999999554333 3466889999999999999998643
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.1e-16 Score=142.62 Aligned_cols=110 Identities=22% Similarity=0.298 Sum_probs=93.4
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015534 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (405)
Q Consensus 112 ~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (405)
..+.......++.+|||||||+|.++..+++.|..+|+|+|+|+ +++.|+++.. ..+++++.+|+.+++++.++|
T Consensus 34 ~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~f 109 (253)
T 3g5l_A 34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIAIEPDAY 109 (253)
T ss_dssp HHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCCCCTTCE
T ss_pred HHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCCCCCCCe
Confidence 34555555668899999999999999999998877999999999 9999998765 256999999999998877899
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
|+|++..+.+++ .++..++..+.++|||||.++..
T Consensus 110 D~v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~ 144 (253)
T 3g5l_A 110 NVVLSSLALHYI---ASFDDICKKVYINLKSSGSFIFS 144 (253)
T ss_dssp EEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEEchhhhhh---hhHHHHHHHHHHHcCCCcEEEEE
Confidence 999996654333 67789999999999999999864
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.1e-16 Score=136.33 Aligned_cols=105 Identities=25% Similarity=0.338 Sum_probs=89.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEcc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEW 197 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~~ 197 (405)
.++.+|||+|||+|.++..+++.|..+|+|+|+|+ +++.|++++..+++ ++++++++|+.++. ++.++||+|++++
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhccCCCccEEEECC
Confidence 57889999999999999988888888999999999 99999999999998 67999999998874 3358999999986
Q ss_pred ccccccChhhHHHHHHHHHh--cccCCcEEEec
Q 015534 198 MGYFLLFENMLNTVLYARDK--WLVDDGIVLPD 228 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~--~LkpgG~lip~ 228 (405)
..+ ........++..+.+ +|+|||+++..
T Consensus 122 p~~--~~~~~~~~~l~~~~~~~~L~pgG~l~~~ 152 (189)
T 3p9n_A 122 PYN--VDSADVDAILAALGTNGWTREGTVAVVE 152 (189)
T ss_dssp CTT--SCHHHHHHHHHHHHHSSSCCTTCEEEEE
T ss_pred CCC--cchhhHHHHHHHHHhcCccCCCeEEEEE
Confidence 521 123567888888888 99999999863
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.1e-16 Score=142.83 Aligned_cols=118 Identities=19% Similarity=0.144 Sum_probs=99.9
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (405)
.+.+.+.......++.+|||||||+|.++..+++....+|+|+|+|+ +++.|++++...+++++++++.+|+.++++++
T Consensus 48 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 48 RLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence 34455555566778899999999999999999985345999999999 99999999999998888999999999988877
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
++||+|++..+ +.+..+...++..+.++|||||+++...
T Consensus 128 ~~fD~v~~~~~---l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 166 (273)
T 3bus_A 128 ASFDAVWALES---LHHMPDRGRALREMARVLRPGGTVAIAD 166 (273)
T ss_dssp TCEEEEEEESC---TTTSSCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CCccEEEEech---hhhCCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 89999999654 3333566899999999999999998653
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.5e-16 Score=144.82 Aligned_cols=105 Identities=17% Similarity=-0.038 Sum_probs=85.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHH----------cC------CCCcEEEEEcccccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA----------NG------FSNVITVLKGKIEEI 183 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~----------~~------~~~~i~~~~~d~~~~ 183 (405)
.++.+|||+|||+|..+..+++.|. +|+|||+|+ |++.|++.... .+ ...+++++++|+.++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 4778999999999999999999987 999999999 99999876531 00 124699999999998
Q ss_pred cCCC-CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 184 ELPV-TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 184 ~~~~-~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+.+. ++||+|++..+..++ .......++..+.++|||||+++.
T Consensus 146 ~~~~~~~FD~V~~~~~l~~l-~~~~~~~~l~~~~~~LkpGG~l~l 189 (252)
T 2gb4_A 146 PRANIGKFDRIWDRGALVAI-NPGDHDRYADIILSLLRKEFQYLV 189 (252)
T ss_dssp GGGCCCCEEEEEESSSTTTS-CGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred CcccCCCEEEEEEhhhhhhC-CHHHHHHHHHHHHHHcCCCeEEEE
Confidence 7653 799999987554444 445677899999999999999863
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-15 Score=142.55 Aligned_cols=115 Identities=18% Similarity=0.080 Sum_probs=97.4
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (405)
..+.+.......++.+|||||||+|.++..+++. | .+|+|+|+|+ +++.|++++...+++++++++.+|+.++ +
T Consensus 60 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~ 135 (302)
T 3hem_A 60 KRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---D 135 (302)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---C
T ss_pred HHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---C
Confidence 3444555566788899999999999999999996 7 5999999999 9999999999999988899999999887 4
Q ss_pred CceeEEEEccccccccC------hhhHHHHHHHHHhcccCCcEEEec
Q 015534 188 TKVDIIISEWMGYFLLF------ENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~------~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
++||+|++..+.+++.. ......++..+.++|||||+++..
T Consensus 136 ~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 182 (302)
T 3hem_A 136 EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH 182 (302)
T ss_dssp CCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEE
T ss_pred CCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 89999999765444422 256689999999999999999864
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.7e-16 Score=137.67 Aligned_cols=116 Identities=20% Similarity=0.291 Sum_probs=96.8
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (405)
.+...+.......++ +|||||||+|.++..+++.+..+|+|+|+|+ +++.|++++...++.++++++++|+.+++++.
T Consensus 31 ~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (219)
T 3dlc_A 31 IIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED 109 (219)
T ss_dssp HHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT
T ss_pred HHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc
Confidence 334444444444455 9999999999999999997445999999999 99999999999998878999999999988887
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
++||+|++..+.+++ ..+..++..+.++|+|||.++..
T Consensus 110 ~~~D~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~ 147 (219)
T 3dlc_A 110 NYADLIVSRGSVFFW---EDVATAFREIYRILKSGGKTYIG 147 (219)
T ss_dssp TCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccEEEECchHhhc---cCHHHHHHHHHHhCCCCCEEEEE
Confidence 899999997654433 67788999999999999998853
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-16 Score=140.10 Aligned_cols=106 Identities=12% Similarity=-0.028 Sum_probs=85.4
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcC-----------CCCcEEEEEcccccccCC
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANG-----------FSNVITVLKGKIEEIELP 186 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~-----------~~~~i~~~~~d~~~~~~~ 186 (405)
...++.+|||+|||+|..+..+++.|. +|+|+|+|+ |++.|+++..... ...+++++++|+.+++++
T Consensus 19 ~~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 19 NVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred ccCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 345788999999999999999999977 999999999 9999998764310 024689999999998765
Q ss_pred C-CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 187 V-TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 187 ~-~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
+ ++||+|++..+.+++ .......++..+.++|||||+++
T Consensus 98 ~~~~fD~v~~~~~l~~l-~~~~~~~~l~~~~r~LkpgG~~~ 137 (203)
T 1pjz_A 98 DIGHCAAFYDRAAMIAL-PADMRERYVQHLEALMPQACSGL 137 (203)
T ss_dssp HHHSEEEEEEESCGGGS-CHHHHHHHHHHHHHHSCSEEEEE
T ss_pred cCCCEEEEEECcchhhC-CHHHHHHHHHHHHHHcCCCcEEE
Confidence 4 689999986544433 34566788999999999999844
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.65 E-value=9.1e-16 Score=137.65 Aligned_cols=107 Identities=13% Similarity=0.111 Sum_probs=90.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCCCC----cEEEEEcccccccCCCCceeEE
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSN----VITVLKGKIEEIELPVTKVDII 193 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~----~i~~~~~d~~~~~~~~~~~D~I 193 (405)
..++.+|||||||+|.++..+++.+ ..+|+|+|+|+ +++.|++++..+++++ +++++.+|+...+.+.++||+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 106 (217)
T 3jwh_A 27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA 106 (217)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence 4577899999999999999999964 46999999999 9999999998888764 7999999997776656799999
Q ss_pred EEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
++..+.+++ .......++..+.++|||||.++.
T Consensus 107 ~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~li~ 139 (217)
T 3jwh_A 107 TVIEVIEHL-DLSRLGAFERVLFEFAQPKIVIVT 139 (217)
T ss_dssp EEESCGGGC-CHHHHHHHHHHHHTTTCCSEEEEE
T ss_pred eeHHHHHcC-CHHHHHHHHHHHHHHcCCCEEEEE
Confidence 997655544 344568899999999999998774
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-15 Score=143.13 Aligned_cols=112 Identities=13% Similarity=0.146 Sum_probs=96.5
Q ss_pred HHHHhccC-CCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015534 112 NVIYQNKF-LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (405)
Q Consensus 112 ~~i~~~~~-~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (405)
+.+..... ..++.+|||||||+|.++..+++. |. +|+|+|+++ +++.|++++..+++.++++++.+|+.+++++.+
T Consensus 106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 184 (312)
T 3vc1_A 106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKG 184 (312)
T ss_dssp HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTT
T ss_pred HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCC
Confidence 34444454 678899999999999999999996 54 999999999 999999999999998889999999999888778
Q ss_pred ceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+||+|++..+.+++ .+..++..+.++|||||+++..
T Consensus 185 ~fD~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~~~ 220 (312)
T 3vc1_A 185 AVTASWNNESTMYV----DLHDLFSEHSRFLKVGGRYVTI 220 (312)
T ss_dssp CEEEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEEE
T ss_pred CEeEEEECCchhhC----CHHHHHHHHHHHcCCCcEEEEE
Confidence 99999996654443 2789999999999999999853
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=141.02 Aligned_cols=105 Identities=19% Similarity=0.256 Sum_probs=91.1
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
...++.+|||||||+|.++..+++.+. +|+|+|+|+ |++.|++++...+++ +++++.+|+.++++++++||+|++..
T Consensus 34 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~l~~~~~~fD~V~~~~ 111 (260)
T 1vl5_A 34 ALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQMPFTDERFHIVTCRI 111 (260)
T ss_dssp TCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CCCSCTTCEEEEEEES
T ss_pred CCCCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecHHhCCCCCCCEEEEEEhh
Confidence 456788999999999999999999865 999999999 999999999988875 59999999999988878999999975
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+.+++ .++..++..+.++|||||+++..
T Consensus 112 ~l~~~---~d~~~~l~~~~r~LkpgG~l~~~ 139 (260)
T 1vl5_A 112 AAHHF---PNPASFVSEAYRVLKKGGQLLLV 139 (260)
T ss_dssp CGGGC---SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhHhc---CCHHHHHHHHHHHcCCCCEEEEE
Confidence 53333 56789999999999999999863
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-15 Score=142.99 Aligned_cols=107 Identities=21% Similarity=0.193 Sum_probs=94.1
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
...++.+|||||||+|.++..+++. |. +|+|+|+|+ +++.|++++...++.++++++.+|+.++++++++||+|++.
T Consensus 79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 157 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQ 157 (297)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEec
Confidence 5678899999999999999999985 65 999999999 99999999999998888999999999998887899999996
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
.+.+++ ..+..++..+.++|||||+++...
T Consensus 158 ~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~ 187 (297)
T 2o57_A 158 DAFLHS---PDKLKVFQECARVLKPRGVMAITD 187 (297)
T ss_dssp SCGGGC---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhhc---CCHHHHHHHHHHHcCCCeEEEEEE
Confidence 553333 457899999999999999998643
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=7.4e-16 Score=138.00 Aligned_cols=114 Identities=14% Similarity=0.068 Sum_probs=95.0
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (405)
.+...+.......++.+|||||||+|.++..+++.+. +|+|+|+|+ +++.|++++...+ +++++.+|+.+++ +.
T Consensus 38 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~-~~ 112 (216)
T 3ofk_A 38 RHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFS-TA 112 (216)
T ss_dssp HHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTCC-CS
T ss_pred HHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhCC-CC
Confidence 4445555455566788999999999999999999865 999999999 9999999877643 6999999999987 45
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
++||+|++..+.+++.....+..++..+.++|||||.++.
T Consensus 113 ~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 152 (216)
T 3ofk_A 113 ELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVF 152 (216)
T ss_dssp CCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred CCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 8999999977666665555667889999999999999985
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.3e-16 Score=144.71 Aligned_cols=123 Identities=19% Similarity=0.122 Sum_probs=97.4
Q ss_pred HhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCC---CcEEEEEccc
Q 015534 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS---NVITVLKGKI 180 (405)
Q Consensus 105 ~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~---~~i~~~~~d~ 180 (405)
.+...+.+.+.......++.+|||||||+|.++..+++.|. +|+|+|+|+ |++.|+++....+.. .++.+..+|+
T Consensus 40 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~ 118 (293)
T 3thr_A 40 SRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANW 118 (293)
T ss_dssp CBCHHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCG
T ss_pred chHHHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecCh
Confidence 34556666666555556788999999999999999999977 999999999 999999887544322 3578999999
Q ss_pred cccc---CCCCceeEEEEc-cccccccC----hhhHHHHHHHHHhcccCCcEEEec
Q 015534 181 EEIE---LPVTKVDIIISE-WMGYFLLF----ENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 181 ~~~~---~~~~~~D~Iv~~-~~~~~l~~----~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.+++ ++.++||+|++. .+.+++.. ...+..++..+.++|||||+++..
T Consensus 119 ~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (293)
T 3thr_A 119 LTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 174 (293)
T ss_dssp GGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred hhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 8887 667899999995 34344433 345889999999999999999854
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-15 Score=131.56 Aligned_cols=107 Identities=17% Similarity=0.163 Sum_probs=86.8
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEEEc
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISE 196 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Iv~~ 196 (405)
...++.+|||+|||+|.++..+++. ..+|+|+|+|+ |++.|++++..+++ +++++++.+...+. ..+++||+|+++
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~~~~~~fD~v~~~ 96 (185)
T 3mti_A 19 VLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDHYVREPIRAAIFN 96 (185)
T ss_dssp TCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGGTCCSCEEEEEEE
T ss_pred hCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHhhccCCcCEEEEe
Confidence 4567899999999999999999998 55999999999 99999999999998 67999998888753 335789999986
Q ss_pred ccccccc-------ChhhHHHHHHHHHhcccCCcEEEec
Q 015534 197 WMGYFLL-------FENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 197 ~~~~~l~-------~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+ ++... .......++..+.++|||||+++..
T Consensus 97 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 134 (185)
T 3mti_A 97 L-GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIM 134 (185)
T ss_dssp E-C-----------CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred C-CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEE
Confidence 3 22211 2345567889999999999998853
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=136.55 Aligned_cols=106 Identities=17% Similarity=0.165 Sum_probs=89.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCCCC----cEEEEEcccccccCCCCceeEEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSN----VITVLKGKIEEIELPVTKVDIII 194 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~----~i~~~~~d~~~~~~~~~~~D~Iv 194 (405)
.++.+|||||||+|.++..+++.+ ..+|+|+|+|+ +++.|++++..+++++ +++++.+|+...+.+.++||+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence 567899999999999999999965 36999999999 9999999998877754 79999999987776668999999
Q ss_pred EccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+..+.+++ .......++..+.++|||||.++.
T Consensus 108 ~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~~i~ 139 (219)
T 3jwg_A 108 VIEVIEHL-DENRLQAFEKVLFEFTRPQTVIVS 139 (219)
T ss_dssp EESCGGGC-CHHHHHHHHHHHHTTTCCSEEEEE
T ss_pred EHHHHHhC-CHHHHHHHHHHHHHhhCCCEEEEE
Confidence 97654444 333557899999999999997763
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.62 E-value=7.4e-15 Score=134.66 Aligned_cols=115 Identities=22% Similarity=0.336 Sum_probs=92.9
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (405)
+...+.......++.+|||+|||+|.++..+++.|. +|+|+|+|+ |++.|++++...+. +++++++|+.+++++ +
T Consensus 29 ~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~-~ 104 (252)
T 1wzn_A 29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFK-N 104 (252)
T ss_dssp HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCC-S
T ss_pred HHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcccC-C
Confidence 333333334445678999999999999999999876 999999999 99999999988775 489999999998766 7
Q ss_pred ceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+||+|++...............++..+.++|+|||.++..
T Consensus 105 ~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~ 144 (252)
T 1wzn_A 105 EFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144 (252)
T ss_dssp CEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 8999998532222334567789999999999999999864
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-15 Score=140.69 Aligned_cols=109 Identities=17% Similarity=0.134 Sum_probs=94.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-CCCceeEEEEcc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-PVTKVDIIISEW 197 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~Iv~~~ 197 (405)
..++.+|||||||+|.++..+++.|..+|+|+|+|+ +++.|++++...++..+++++.+|+.++++ +.++||+|++..
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 467889999999999999999998877999999999 999999999988887789999999998876 468999999965
Q ss_pred ccccc-cChhhHHHHHHHHHhcccCCcEEEec
Q 015534 198 MGYFL-LFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 198 ~~~~l-~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+.+++ .+...+..++..+.++|||||.++..
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 173 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMT 173 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 43332 45677889999999999999999854
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.3e-15 Score=131.16 Aligned_cols=103 Identities=12% Similarity=0.148 Sum_probs=87.2
Q ss_pred ccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015534 117 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (405)
Q Consensus 117 ~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (405)
.....++.+|||||||+|.++..+++. ..+|+|+|+|+ +++.|++++..++++++++++.+|+.+.....++||+|++
T Consensus 50 ~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~ 128 (204)
T 3njr_A 50 ALAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFI 128 (204)
T ss_dssp HHCCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEE
T ss_pred hcCCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEE
Confidence 345678899999999999999999999 55999999999 9999999999999976899999999884333368999998
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
... + ... ++..+.++|||||+++..
T Consensus 129 ~~~---~----~~~-~l~~~~~~LkpgG~lv~~ 153 (204)
T 3njr_A 129 GGG---G----SQA-LYDRLWEWLAPGTRIVAN 153 (204)
T ss_dssp CSC---C----CHH-HHHHHHHHSCTTCEEEEE
T ss_pred CCc---c----cHH-HHHHHHHhcCCCcEEEEE
Confidence 542 2 344 889999999999999853
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.2e-16 Score=142.54 Aligned_cols=104 Identities=19% Similarity=0.118 Sum_probs=84.5
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (405)
+.+.|.... ..+.+|||||||+|.++..+++.|. +|+|+|+|+ |++.|++. .+++++++++++++++++
T Consensus 29 l~~~l~~~~--~~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~~-------~~v~~~~~~~e~~~~~~~ 98 (257)
T 4hg2_A 29 LFRWLGEVA--PARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALRH-------PRVTYAVAPAEDTGLPPA 98 (257)
T ss_dssp HHHHHHHHS--SCSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCCC-------TTEEEEECCTTCCCCCSS
T ss_pred HHHHHHHhc--CCCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhhc-------CCceeehhhhhhhcccCC
Confidence 344444332 3456999999999999999999865 999999999 99887642 469999999999999989
Q ss_pred ceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+||+|++....+++ +.+.++.++.|+|||||+++.
T Consensus 99 sfD~v~~~~~~h~~----~~~~~~~e~~rvLkpgG~l~~ 133 (257)
T 4hg2_A 99 SVDVAIAAQAMHWF----DLDRFWAELRRVARPGAVFAA 133 (257)
T ss_dssp CEEEEEECSCCTTC----CHHHHHHHHHHHEEEEEEEEE
T ss_pred cccEEEEeeehhHh----hHHHHHHHHHHHcCCCCEEEE
Confidence 99999996543332 467889999999999999874
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-15 Score=135.17 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=86.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCC-CcEEEEEcccccccC--CCCc-eeEEEEc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIEL--PVTK-VDIIISE 196 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~--~~~~-~D~Iv~~ 196 (405)
++.+|||+|||+|.++..++..|+.+|+|+|+|+ |++.|++++..+++. ++++++.+|+.++.. +.++ ||+|+++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 6789999999999999998888778999999999 999999999999984 579999999988643 2478 9999998
Q ss_pred cccccccChhhHHHHHHHH--HhcccCCcEEEec
Q 015534 197 WMGYFLLFENMLNTVLYAR--DKWLVDDGIVLPD 228 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~--~~~LkpgG~lip~ 228 (405)
+. +. ......++..+ .++|+|||.++..
T Consensus 133 ~~-~~---~~~~~~~l~~~~~~~~LkpgG~l~i~ 162 (201)
T 2ift_A 133 PP-FH---FNLAEQAISLLCENNWLKPNALIYVE 162 (201)
T ss_dssp CC-SS---SCHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred CC-CC---CccHHHHHHHHHhcCccCCCcEEEEE
Confidence 65 22 35667777777 6789999998854
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.60 E-value=5e-15 Score=138.54 Aligned_cols=103 Identities=25% Similarity=0.275 Sum_probs=89.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEEEcccc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWMG 199 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Iv~~~~~ 199 (405)
++.+|||||||+|.++..+++.|. +|+|+|+|+ +++.|++++...+++++++++.+|+.+++ +++++||+|++..+.
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l 146 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVL 146 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCG
T ss_pred CCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchh
Confidence 467999999999999999999966 999999999 99999999999988778999999999987 566899999996554
Q ss_pred ccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+++ .++..++..+.++|||||+++..
T Consensus 147 ~~~---~~~~~~l~~~~~~LkpgG~l~~~ 172 (285)
T 4htf_A 147 EWV---ADPRSVLQTLWSVLRPGGVLSLM 172 (285)
T ss_dssp GGC---SCHHHHHHHHHHTEEEEEEEEEE
T ss_pred hcc---cCHHHHHHHHHHHcCCCeEEEEE
Confidence 433 56688999999999999999854
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-15 Score=137.04 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=88.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc--cCCCCceeEEEEc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--ELPVTKVDIIISE 196 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~Iv~~ 196 (405)
..++.+|||||||+|.++..+++.+..+|+|+|+|+ |++.|+++....+ .+++++.+|+.++ ++++++||+|+++
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~fD~V~~d 135 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYD 135 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhcccCCCceEEEEEC
Confidence 357789999999999999999887666999999999 9999999887766 5699999999998 7777899999993
Q ss_pred ccc--ccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 197 WMG--YFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 197 ~~~--~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
.+. ....+......++..+.++|||||+++...
T Consensus 136 ~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 136 TYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred CcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 211 111223455678999999999999998654
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-14 Score=129.40 Aligned_cols=109 Identities=19% Similarity=0.252 Sum_probs=91.0
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (405)
.+.......++.+|||||||+|.++..+++.+ ..+|+|+|+|+ +++.|++++..+++ ++++++.+|+.+.....++|
T Consensus 31 ~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~ 109 (204)
T 3e05_A 31 VTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGLDDLPDP 109 (204)
T ss_dssp HHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTCTTSCCC
T ss_pred HHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhhhcCCCC
Confidence 34444566788999999999999999999975 57999999999 99999999999988 67999999997654434789
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
|+|++.... ..+..++..+.++|+|||+++..
T Consensus 110 D~i~~~~~~------~~~~~~l~~~~~~LkpgG~l~~~ 141 (204)
T 3e05_A 110 DRVFIGGSG------GMLEEIIDAVDRRLKSEGVIVLN 141 (204)
T ss_dssp SEEEESCCT------TCHHHHHHHHHHHCCTTCEEEEE
T ss_pred CEEEECCCC------cCHHHHHHHHHHhcCCCeEEEEE
Confidence 999986532 25678999999999999999853
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.9e-15 Score=137.46 Aligned_cols=110 Identities=21% Similarity=0.321 Sum_probs=91.1
Q ss_pred cCCC-CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEE
Q 015534 118 KFLF-KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDII 193 (405)
Q Consensus 118 ~~~~-~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~I 193 (405)
.... ++.+|||+|||+|.+++.+++.+..+|+|+|+++ +++.|++++..+++.++++++++|+.++. ++.++||+|
T Consensus 44 ~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~I 123 (259)
T 3lpm_A 44 SYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIV 123 (259)
T ss_dssp CCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEE
T ss_pred hcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEE
Confidence 3455 7889999999999999999998766999999999 99999999999999888999999999876 345899999
Q ss_pred EEccccccc-----cC------------hhhHHHHHHHHHhcccCCcEEEe
Q 015534 194 ISEWMGYFL-----LF------------ENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 194 v~~~~~~~l-----~~------------~~~~~~~l~~~~~~LkpgG~lip 227 (405)
++++..+.. .. ...+..++..+.++|+|||+++.
T Consensus 124 i~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~ 174 (259)
T 3lpm_A 124 TCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANF 174 (259)
T ss_dssp EECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred EECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEE
Confidence 998642211 00 12356789999999999999885
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-14 Score=136.06 Aligned_cols=115 Identities=21% Similarity=0.186 Sum_probs=95.8
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (405)
..+.+.......++.+|||||||+|.++..+++ .|. +|+|+|+|+ +++.|++++...++.++++++.+|+.+++
T Consensus 52 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--- 127 (287)
T 1kpg_A 52 KIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--- 127 (287)
T ss_dssp HHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---
T ss_pred HHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---
Confidence 444555556677889999999999999999995 666 999999999 99999999998888778999999998764
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
++||+|++..+.+++. ......++..+.++|||||+++...
T Consensus 128 ~~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~ 168 (287)
T 1kpg_A 128 EPVDRIVSIGAFEHFG-HERYDAFFSLAHRLLPADGVMLLHT 168 (287)
T ss_dssp CCCSEEEEESCGGGTC-TTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCeeEEEEeCchhhcC-hHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 7899999965543332 2567889999999999999998644
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-15 Score=135.93 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=92.8
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (405)
.+...+... ..++.+|||||||+|.++..+++.|..+|+|+|+|+ +++.|+++.... .+++++.+|+.++++++
T Consensus 31 ~~~~~l~~~--~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~---~~i~~~~~d~~~~~~~~ 105 (215)
T 2pxx_A 31 SFRALLEPE--LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHV---PQLRWETMDVRKLDFPS 105 (215)
T ss_dssp HHHHHHGGG--CCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTC---TTCEEEECCTTSCCSCS
T ss_pred HHHHHHHHh--cCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccC---CCcEEEEcchhcCCCCC
Confidence 345555543 367789999999999999999998777999999999 999999987642 46999999999988777
Q ss_pred CceeEEEEcccccccc------------ChhhHHHHHHHHHhcccCCcEEEec
Q 015534 188 TKVDIIISEWMGYFLL------------FENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~------------~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
++||+|++..+.+.+. +......++..+.++|||||.++..
T Consensus 106 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 158 (215)
T 2pxx_A 106 ASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISM 158 (215)
T ss_dssp SCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEE
Confidence 8999999976543332 2346678999999999999998853
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-15 Score=130.59 Aligned_cols=105 Identities=19% Similarity=0.208 Sum_probs=86.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc-cCCCCceeEEEEcc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDIIISEW 197 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~Iv~~~ 197 (405)
..++.+|||+|||+|.++..+++.|..+|+|+|+|+ +++.|++++..+++.++++++.+|+.+. +...++||+|++++
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 457789999999999999999998778999999999 9999999999999877899999999874 32236799999976
Q ss_pred ccccccChhhHHHHHHHHH--hcccCCcEEEec
Q 015534 198 MGYFLLFENMLNTVLYARD--KWLVDDGIVLPD 228 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~--~~LkpgG~lip~ 228 (405)
... ......++..+. ++|+|||+++..
T Consensus 109 ~~~----~~~~~~~~~~l~~~~~L~~gG~l~~~ 137 (177)
T 2esr_A 109 PYA----KETIVATIEALAAKNLLSEQVMVVCE 137 (177)
T ss_dssp SSH----HHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred CCC----cchHHHHHHHHHhCCCcCCCcEEEEE
Confidence 421 134456666665 999999998853
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-14 Score=128.35 Aligned_cols=105 Identities=19% Similarity=0.214 Sum_probs=90.2
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
...++.+|||||||+|.++..+++.|. +|+|+|+|+ +++.|++++..++++ +++++.+|+.++++ .++||+|++..
T Consensus 29 ~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~-~~~~D~v~~~~ 105 (199)
T 2xvm_A 29 KVVKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENLD-NLHTRVVDLNNLTF-DRQYDFILSTV 105 (199)
T ss_dssp TTSCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECCGGGCCC-CCCEEEEEEES
T ss_pred hccCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCCC-CcEEEEcchhhCCC-CCCceEEEEcc
Confidence 345678999999999999999999865 999999999 999999999888874 49999999999877 58999999976
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+.+++ .......++..+.++|+|||.++.
T Consensus 106 ~l~~~-~~~~~~~~l~~~~~~L~~gG~l~~ 134 (199)
T 2xvm_A 106 VLMFL-EAKTIPGLIANMQRCTKPGGYNLI 134 (199)
T ss_dssp CGGGS-CGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred hhhhC-CHHHHHHHHHHHHHhcCCCeEEEE
Confidence 54444 234778899999999999999764
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.3e-15 Score=135.44 Aligned_cols=106 Identities=21% Similarity=0.291 Sum_probs=92.2
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
....++.+|||||||+|.++..+++.+. +|+|+|+|+ +++.|++++...+++ +++++.+|++++++++++||+|++.
T Consensus 17 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~v~~~ 94 (239)
T 1xxl_A 17 AECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESLPFPDDSFDIITCR 94 (239)
T ss_dssp HTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBCCSCTTCEEEEEEE
T ss_pred hCcCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCC-CeEEEecccccCCCCCCcEEEEEEC
Confidence 4467889999999999999999999865 999999999 999999999988875 5999999999988877899999996
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.+.++ ..++..++..+.++|||||+++..
T Consensus 95 ~~l~~---~~~~~~~l~~~~~~LkpgG~l~~~ 123 (239)
T 1xxl_A 95 YAAHH---FSDVRKAVREVARVLKQDGRFLLV 123 (239)
T ss_dssp SCGGG---CSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred Cchhh---ccCHHHHHHHHHHHcCCCcEEEEE
Confidence 54333 356788999999999999998853
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-15 Score=137.70 Aligned_cols=107 Identities=20% Similarity=0.203 Sum_probs=89.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISE 196 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~ 196 (405)
..+|.+|||||||+|..+..+++.+..+|++||+|+ +++.|+++....+ .+++++.+|+.++. +++++||.|+.+
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~FD~i~~D 135 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYD 135 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC--CceEEEeehHHhhcccccccCCceEEEe
Confidence 357889999999999999999987666999999999 9999999988776 45899999987753 567899999976
Q ss_pred ccc--ccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 197 WMG--YFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 197 ~~~--~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.+. ..+.+..+...++.++.|+|||||++++.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 136 TYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred eeecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 432 33455567889999999999999999864
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.60 E-value=3.7e-15 Score=135.76 Aligned_cols=103 Identities=20% Similarity=0.245 Sum_probs=89.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc-c
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW-M 198 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~-~ 198 (405)
.++.+|||||||+|.++..+++.|. +|+|+|+|+ |++.|+++....+. +++++.+|+.+++++ ++||+|++.. +
T Consensus 36 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~-~~fD~v~~~~~~ 111 (246)
T 1y8c_A 36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNIN-RKFDLITCCLDS 111 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCS-CCEEEEEECTTG
T ss_pred CCCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCCcc-CCceEEEEcCcc
Confidence 3778999999999999999999865 899999999 99999999988775 589999999998877 8999999965 5
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.+++.....+..++..+.++|+|||+++.
T Consensus 112 l~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 140 (246)
T 1y8c_A 112 TNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp GGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 45554446788999999999999999885
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.3e-15 Score=135.67 Aligned_cols=116 Identities=18% Similarity=0.191 Sum_probs=94.9
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (405)
+...+.......++.+|||||||+|.++..+++.+..+|+++|+|+ +++.|++++... .+++++.+|+.+++++.+
T Consensus 81 ~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~ 157 (254)
T 1xtp_A 81 GSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPPN 157 (254)
T ss_dssp HHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCSS
T ss_pred HHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCCCCCC
Confidence 3344444455667899999999999999999997777899999999 999999987654 469999999999887778
Q ss_pred ceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+||+|++..+.+++. ...+..++..+.++|||||+++...
T Consensus 158 ~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 197 (254)
T 1xtp_A 158 TYDLIVIQWTAIYLT-DADFVKFFKHCQQALTPNGYIFFKE 197 (254)
T ss_dssp CEEEEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CeEEEEEcchhhhCC-HHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 999999976544332 2567899999999999999998643
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.4e-15 Score=142.24 Aligned_cols=118 Identities=11% Similarity=0.106 Sum_probs=98.3
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHH--HcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCA--KAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la--~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (405)
.+...+. ....++.+|||||||+|.++..++ ..+..+|+|+|+|+ +++.|++++...++.++++++++|+.++++
T Consensus 107 ~~~~~l~--~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 184 (305)
T 3ocj_A 107 HFRRALQ--RHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT 184 (305)
T ss_dssp HHHHHHH--HHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC
T ss_pred HHHHHHH--hhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc
Confidence 3445553 345688999999999999999985 34566999999999 999999999999988889999999999988
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+ ++||+|++..+.+++........++..+.++|||||+++...
T Consensus 185 ~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 227 (305)
T 3ocj_A 185 R-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSF 227 (305)
T ss_dssp C-SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred c-CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 7 999999997765555455555668999999999999998644
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.8e-15 Score=133.53 Aligned_cols=107 Identities=26% Similarity=0.252 Sum_probs=92.6
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcC--CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 194 (405)
....++.+|||||||+|.++..+++.+ ..+|+|+|+|+ +++.|++++...+++ +++++.+|+.+++++.++||+|+
T Consensus 33 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~fD~v~ 111 (219)
T 3dh0_A 33 FGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIPLPDNTVDFIF 111 (219)
T ss_dssp HTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCSSCSSCEEEEE
T ss_pred hCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCCCCCCCeeEEE
Confidence 345678899999999999999999964 45999999999 999999999998885 69999999999888778999999
Q ss_pred EccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+..+.+++ .+...++..+.++|+|||.++..
T Consensus 112 ~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~i~ 142 (219)
T 3dh0_A 112 MAFTFHEL---SEPLKFLEELKRVAKPFAYLAII 142 (219)
T ss_dssp EESCGGGC---SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred eehhhhhc---CCHHHHHHHHHHHhCCCeEEEEE
Confidence 96554433 56788999999999999999853
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.3e-15 Score=138.09 Aligned_cols=113 Identities=18% Similarity=0.212 Sum_probs=92.8
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH--cCCCeEEEEechH-HHHHHHHHHHHc-CCCCcEEEEEcccccccC
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK--AGAAHVYAVECSQ-MANMAKQIVEAN-GFSNVITVLKGKIEEIEL 185 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~--~g~~~V~~vD~s~-~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~~ 185 (405)
+.+.|.... ..++.+|||||||+|.++..+++ .+..+|+|+|+|+ +++.|++++... +...+++++++|++++++
T Consensus 25 ~~~~l~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~ 103 (299)
T 3g5t_A 25 FYKMIDEYH-DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKF 103 (299)
T ss_dssp HHHHHHHHC-CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGG
T ss_pred HHHHHHHHh-cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCc
Confidence 344444322 35788999999999999999997 3567999999999 999999999887 445679999999999887
Q ss_pred CC------CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 186 PV------TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 186 ~~------~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+. ++||+|++..+.+++ ++..++..+.++|+|||.++.
T Consensus 104 ~~~~~~~~~~fD~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 104 LGADSVDKQKIDMITAVECAHWF----DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp GCTTTTTSSCEEEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccccCCCeeEEeHhhHHHHh----CHHHHHHHHHHhcCCCcEEEE
Confidence 65 799999997654433 678899999999999999885
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.2e-15 Score=136.67 Aligned_cols=117 Identities=19% Similarity=0.252 Sum_probs=98.6
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (405)
.+...+.......++.+|||||||+|.++..+++.+ ..+|+|+|+|+ +++.|++++...+++ +++++.+|+.+++++
T Consensus 24 ~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~ 102 (276)
T 3mgg_A 24 TLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK-NVKFLQANIFSLPFE 102 (276)
T ss_dssp HHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGCCSC
T ss_pred HHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEcccccCCCC
Confidence 445555555566788999999999999999999964 56999999999 999999999998885 599999999999887
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
.++||+|++..+.+++ .++..++..+.++|||||+++...
T Consensus 103 ~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 103 DSSFDHIFVCFVLEHL---QSPEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp TTCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCeeEEEEechhhhc---CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 7899999997654433 566789999999999999988643
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-14 Score=134.19 Aligned_cols=102 Identities=14% Similarity=0.256 Sum_probs=86.5
Q ss_pred cCCCCCCEEEEEcCCCcHHH-HHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015534 118 KFLFKDKVVLDVGAGTGILS-LFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~-~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (405)
....++.+|||||||+|.++ +.+++....+|+|+|+|+ |++.|+++++..++ ++++++++|+.+++ +++||+|++
T Consensus 118 a~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~--d~~FDvV~~ 194 (298)
T 3fpf_A 118 GRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVID--GLEFDVLMV 194 (298)
T ss_dssp TTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGG--GCCCSEEEE
T ss_pred cCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCC--CCCcCEEEE
Confidence 56788999999999998654 666774445999999999 99999999999998 78999999999875 489999997
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
... .+....++.++.++|||||+++..
T Consensus 195 ~a~------~~d~~~~l~el~r~LkPGG~Lvv~ 221 (298)
T 3fpf_A 195 AAL------AEPKRRVFRNIHRYVDTETRIIYR 221 (298)
T ss_dssp CTT------CSCHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCC------ccCHHHHHHHHHHHcCCCcEEEEE
Confidence 532 256678999999999999999853
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-14 Score=130.64 Aligned_cols=116 Identities=18% Similarity=0.198 Sum_probs=95.4
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (405)
...+.+.+.... .++.+|||||||+|.++..+++.+. +|+|+|+|+ +++.|+++...++ .+++++.+|+.++++
T Consensus 25 ~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~ 99 (227)
T 1ve3_A 25 IETLEPLLMKYM--KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSF 99 (227)
T ss_dssp HHHHHHHHHHSC--CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCS
T ss_pred HHHHHHHHHHhc--CCCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCCC
Confidence 445555565443 3478999999999999999999876 999999999 9999999998877 469999999999877
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+.++||+|++..+.+ +.+......++..+.++|+|||.++..
T Consensus 100 ~~~~~D~v~~~~~~~-~~~~~~~~~~l~~~~~~L~~gG~l~~~ 141 (227)
T 1ve3_A 100 EDKTFDYVIFIDSIV-HFEPLELNQVFKEVRRVLKPSGKFIMY 141 (227)
T ss_dssp CTTCEEEEEEESCGG-GCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCcEEEEEEcCchH-hCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 768999999975422 334567788999999999999998853
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.8e-15 Score=132.62 Aligned_cols=104 Identities=23% Similarity=0.291 Sum_probs=87.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
..++.+|||||||+|.++..+++.. ..+|+|+|+|+ +++.|++++...+ +++++.+|+.+++++ ++||+|++..
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~-~~fD~v~~~~ 117 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDFE-EKYDMVVSAL 117 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCCC-SCEEEEEEES
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCCC-CCceEEEEeC
Confidence 5677899999999999999999963 55999999999 9999999876554 699999999999877 8999999976
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+.+++ .......++..+.++|||||+++..
T Consensus 118 ~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~ 147 (234)
T 3dtn_A 118 SIHHL-EDEDKKELYKRSYSILKESGIFINA 147 (234)
T ss_dssp CGGGS-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccC-CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 54444 2233446899999999999999854
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.5e-15 Score=129.55 Aligned_cols=109 Identities=15% Similarity=0.163 Sum_probs=89.9
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEE
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIII 194 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Iv 194 (405)
...++.+|||+|||+|.++..+++. +..+|+|+|+++ +++.|++++..+++.++++++++|+.++. ...++||+|+
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~ 98 (197)
T 3eey_A 19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVM 98 (197)
T ss_dssp HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEE
Confidence 3467889999999999999999995 456999999999 99999999999988778999999998875 4458999999
Q ss_pred Ecccc------ccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 195 SEWMG------YFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 195 ~~~~~------~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+++.. ...........++..+.++|||||+++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~ 137 (197)
T 3eey_A 99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITV 137 (197)
T ss_dssp EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEE
Confidence 97521 0122233556789999999999999885
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.58 E-value=7.6e-16 Score=142.62 Aligned_cols=110 Identities=12% Similarity=0.110 Sum_probs=86.3
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCC----------------------------
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF---------------------------- 169 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~---------------------------- 169 (405)
...++.+|||||||+|.++..++..|+.+|+|+|+|+ |++.|++++..+..
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 4567889999999999998888888887899999999 99999987755421
Q ss_pred CCcEE-EEEcccccc-cC---CCCceeEEEEccccccc-cChhhHHHHHHHHHhcccCCcEEEec
Q 015534 170 SNVIT-VLKGKIEEI-EL---PVTKVDIIISEWMGYFL-LFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 170 ~~~i~-~~~~d~~~~-~~---~~~~~D~Iv~~~~~~~l-~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
..+++ ++++|+.+. ++ ..++||+|++..+.+++ .+...+..++..+.++|||||.++..
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~ 196 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTT 196 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 01244 899999874 22 24689999997665543 23356778999999999999999875
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-14 Score=133.02 Aligned_cols=116 Identities=21% Similarity=0.239 Sum_probs=93.0
Q ss_pred HHHHHHHHHh-ccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc
Q 015534 107 TKSYQNVIYQ-NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (405)
Q Consensus 107 ~~~~~~~i~~-~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (405)
...+.+.+.. .....++.+|||||||+|.++..+++.+. +|+|+|+|+ +++.|++++ . +...+++++.+|+.+++
T Consensus 23 ~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-~-~~~~~~~~~~~d~~~~~ 99 (263)
T 2yqz_A 23 AGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQKI-A-GVDRKVQVVQADARAIP 99 (263)
T ss_dssp HHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHHHHHHHHT-T-TSCTTEEEEESCTTSCC
T ss_pred HHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh-h-ccCCceEEEEcccccCC
Confidence 3344444432 23456788999999999999999999864 999999999 999999987 2 22356999999999988
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+++++||+|++..+.++ ..+...++..+.++|||||.++..
T Consensus 100 ~~~~~fD~v~~~~~l~~---~~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 100 LPDESVHGVIVVHLWHL---VPDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp SCTTCEEEEEEESCGGG---CTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCCeeEEEECCchhh---cCCHHHHHHHHHHHCCCCcEEEEE
Confidence 77789999999655333 356788999999999999999865
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-14 Score=136.63 Aligned_cols=116 Identities=16% Similarity=0.088 Sum_probs=96.9
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (405)
...+.+.......++.+|||||||+|.++..+++. |. +|+|+|+|+ +++.|++++...++.++++++.+|+.+++
T Consensus 77 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 153 (318)
T 2fk8_A 77 AKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA-- 153 (318)
T ss_dssp HHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC--
T ss_pred HHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC--
Confidence 34455555566778899999999999999999986 66 999999999 99999999999888888999999998874
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
++||+|++..+.+++ ....+..++..+.++|||||+++...
T Consensus 154 -~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~ 194 (318)
T 2fk8_A 154 -EPVDRIVSIEAFEHF-GHENYDDFFKRCFNIMPADGRMTVQS 194 (318)
T ss_dssp -CCCSEEEEESCGGGT-CGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred -CCcCEEEEeChHHhc-CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 789999996554333 22577899999999999999998643
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.5e-15 Score=136.94 Aligned_cols=116 Identities=26% Similarity=0.296 Sum_probs=94.9
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (405)
....+.......++.+|||||||+|.++..+++....+|+|+|+|+ +++.|+++.... .+++++.+|+.+++++.+
T Consensus 43 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~ 119 (266)
T 3ujc_A 43 ATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKEFPEN 119 (266)
T ss_dssp HHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTCCCCTT
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccCCCCCC
Confidence 3445555566778899999999999999999996234999999999 999999876554 469999999999988779
Q ss_pred ceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+||+|++..+.+++ ....+..++..+.++|||||.++...
T Consensus 120 ~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (266)
T 3ujc_A 120 NFDLIYSRDAILAL-SLENKNKLFQKCYKWLKPTGTLLITD 159 (266)
T ss_dssp CEEEEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEEeHHHHHHhc-ChHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 99999996543333 22678899999999999999998643
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.6e-15 Score=132.37 Aligned_cols=107 Identities=14% Similarity=0.155 Sum_probs=92.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCC----CCcEEEEEcccccccCCCCceeEEEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF----SNVITVLKGKIEEIELPVTKVDIIIS 195 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (405)
.++.+|||||||+|.++..+++.|. +|+|+|+|+ +++.|++++...++ .++++++.+|+..++++.++||+|++
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 107 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM 107 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence 4788999999999999999999966 999999999 99999999887776 24689999999998887789999999
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
..+.+++........++..+.++|+|||+++..
T Consensus 108 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (235)
T 3sm3_A 108 QAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLV 140 (235)
T ss_dssp ESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 766555544444558999999999999999854
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.4e-15 Score=140.16 Aligned_cols=107 Identities=14% Similarity=0.085 Sum_probs=82.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCC-----cEEEEEccc------cccc--CCC
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSN-----VITVLKGKI------EEIE--LPV 187 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~-----~i~~~~~d~------~~~~--~~~ 187 (405)
++.+|||||||+|..+..+++.+..+|+|+|+|+ |++.|+++....+... .+++.+.|+ .++. ++.
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 5789999999999876666676666999999999 9999999987765421 267888887 3332 345
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
++||+|+|..+.+++.+......++.++.++|||||+++..
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~ 168 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLIT 168 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 79999999655444434345679999999999999999864
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=135.97 Aligned_cols=102 Identities=20% Similarity=0.224 Sum_probs=90.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
.++.+|||+|||+|.++..+++.|. +|+|+|+|+ +++.|++++..+++ +++++.+|+.++.. .++||+|++..+.
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-~~~fD~i~~~~~~ 194 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANI-QENYDFIVSTVVF 194 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCC-CSCEEEEEECSSG
T ss_pred cCCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccc-cCCccEEEEccch
Confidence 3788999999999999999999977 999999999 99999999999887 59999999999877 5899999998765
Q ss_pred ccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+++ .......++..+.++|+|||.++.
T Consensus 195 ~~~-~~~~~~~~l~~~~~~LkpgG~l~i 221 (286)
T 3m70_A 195 MFL-NRERVPSIIKNMKEHTNVGGYNLI 221 (286)
T ss_dssp GGS-CGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred hhC-CHHHHHHHHHHHHHhcCCCcEEEE
Confidence 544 445678999999999999999764
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.8e-15 Score=140.06 Aligned_cols=108 Identities=18% Similarity=0.259 Sum_probs=86.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCC-----------------------------
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGF----------------------------- 169 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~----------------------------- 169 (405)
.++.+|||||||+|.++..+++. +..+|+|+|+|+ |++.|++++...+.
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 46889999999999999999995 567999999999 99999998765442
Q ss_pred ----------------------------CCcEEEEEccccccc-----CCCCceeEEEEcccccccc---ChhhHHHHHH
Q 015534 170 ----------------------------SNVITVLKGKIEEIE-----LPVTKVDIIISEWMGYFLL---FENMLNTVLY 213 (405)
Q Consensus 170 ----------------------------~~~i~~~~~d~~~~~-----~~~~~~D~Iv~~~~~~~l~---~~~~~~~~l~ 213 (405)
+++++|+++|+.... +..++||+|+|..+..+++ +...+..++.
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 257999999997654 3458999999976543332 4457788999
Q ss_pred HHHhcccCCcEEEec
Q 015534 214 ARDKWLVDDGIVLPD 228 (405)
Q Consensus 214 ~~~~~LkpgG~lip~ 228 (405)
.+.++|+|||+++..
T Consensus 205 ~~~~~LkpGG~lil~ 219 (292)
T 3g07_A 205 RIYRHLRPGGILVLE 219 (292)
T ss_dssp HHHHHEEEEEEEEEE
T ss_pred HHHHHhCCCcEEEEe
Confidence 999999999999863
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.57 E-value=5.5e-15 Score=131.33 Aligned_cols=102 Identities=18% Similarity=0.226 Sum_probs=84.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc-cCCCCceeEEEEcccc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDIIISEWMG 199 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~Iv~~~~~ 199 (405)
++.+|||+|||+|.+++.+++.|+.+|+|+|+|+ |++.|++++..+++ ++++++++|+.+. +...++||+|++++.
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~~~~fD~V~~~~p- 131 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPP- 131 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCS-
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhcCCCCCEEEECCC-
Confidence 6789999999999999998888877999999999 99999999999988 5799999999874 444578999999865
Q ss_pred ccccChhhHHHHHHHHHh--cccCCcEEEec
Q 015534 200 YFLLFENMLNTVLYARDK--WLVDDGIVLPD 228 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~--~LkpgG~lip~ 228 (405)
+. ......++..+.+ +|+|||+++..
T Consensus 132 ~~---~~~~~~~l~~l~~~~~L~pgG~l~i~ 159 (202)
T 2fpo_A 132 FR---RGLLEETINLLEDNGWLADEALIYVE 159 (202)
T ss_dssp SS---TTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred CC---CCcHHHHHHHHHhcCccCCCcEEEEE
Confidence 22 2455566666654 69999998853
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=5.8e-15 Score=139.14 Aligned_cols=105 Identities=18% Similarity=0.164 Sum_probs=86.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCC--CcEEEEEcccccccCCCCceeEEEEccc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS--NVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
++.+|||||||+|.++..+++.|. +|+|+|+|+ +++.|++++...++. .+++++++|+.+++++ ++||+|++...
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~ 159 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALD-KRFGTVVISSG 159 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCS-CCEEEEEECHH
T ss_pred CCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcC-CCcCEEEECCc
Confidence 344999999999999999999865 899999999 999999999877642 4699999999998874 89999997432
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
............++..+.++|||||+++..
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 189 (299)
T 3g2m_A 160 SINELDEADRRGLYASVREHLEPGGKFLLS 189 (299)
T ss_dssp HHTTSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 222334456789999999999999999854
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.57 E-value=8.6e-15 Score=127.73 Aligned_cols=105 Identities=14% Similarity=0.183 Sum_probs=85.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----CCCceeEEE
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----PVTKVDIII 194 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~D~Iv 194 (405)
..++.+|||+|||+|.++..+++.+..+|+|+|+++ +++.|++++..+++.++++++++|+.+... ..++||+|+
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 42 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 357889999999999999999998778999999999 999999999999887789999999987431 247899999
Q ss_pred EccccccccChhhHHHHHHHH--HhcccCCcEEEec
Q 015534 195 SEWMGYFLLFENMLNTVLYAR--DKWLVDDGIVLPD 228 (405)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~--~~~LkpgG~lip~ 228 (405)
+++. +.. .....++..+ .++|+|||+++..
T Consensus 122 ~~~~-~~~---~~~~~~~~~l~~~~~L~~gG~l~~~ 153 (187)
T 2fhp_A 122 LDPP-YAK---QEIVSQLEKMLERQLLTNEAVIVCE 153 (187)
T ss_dssp ECCC-GGG---CCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred ECCC-CCc---hhHHHHHHHHHHhcccCCCCEEEEE
Confidence 9865 221 2344555555 7899999998853
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-14 Score=130.87 Aligned_cols=113 Identities=23% Similarity=0.312 Sum_probs=93.2
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015534 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (405)
Q Consensus 108 ~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (405)
..+.+.+... ..++.+|||||||+|.++..+++. .+|+|+|+|+ +++.|+++....+ .+++++.+|+.+++++
T Consensus 21 ~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~ 94 (243)
T 3d2l_A 21 PEWVAWVLEQ--VEPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELELP 94 (243)
T ss_dssp HHHHHHHHHH--SCTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCCCS
T ss_pred HHHHHHHHHH--cCCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcCCC
Confidence 3455555543 345689999999999999999887 5999999999 9999999998776 3589999999998776
Q ss_pred CCceeEEEEcc-ccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 187 VTKVDIIISEW-MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 187 ~~~~D~Iv~~~-~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
++||+|++.. +.+++.....+..++..+.++|+|||+++.
T Consensus 95 -~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 135 (243)
T 3d2l_A 95 -EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLF 135 (243)
T ss_dssp -SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred -CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 8999999864 444454556788899999999999999885
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.56 E-value=8.7e-15 Score=133.44 Aligned_cols=105 Identities=20% Similarity=0.223 Sum_probs=88.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (405)
++.+|||||||+|.++..+++.+..+|+|+|+|+ +++.|++++...+ ..+++++.+|+.+++++.++||+|++..+.+
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 5789999999999999999987767999999999 9999999987764 2469999999999887767999999975544
Q ss_pred cccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 201 FLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
++ .......++..+.++|+|||+++..
T Consensus 158 ~~-~~~~~~~~l~~~~~~LkpgG~l~i~ 184 (241)
T 2ex4_A 158 HL-TDQHLAEFLRRCKGSLRPNGIIVIK 184 (241)
T ss_dssp GS-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hC-CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 33 2233568999999999999999864
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.56 E-value=9.9e-15 Score=129.77 Aligned_cols=105 Identities=20% Similarity=0.269 Sum_probs=86.4
Q ss_pred CCCCCEEEEEcCCCcHHH-HHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 120 LFKDKVVLDVGAGTGILS-LFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~-~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
..++.+|||+|||+|.++ ..+++.|. +|+|+|+|+ +++.|++++...+ .+++++.+|+.+++++.++||+|++..
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~ 97 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENN--FKLNISKGDIRKLPFKDESMSFVYSYG 97 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCTTSCCSCTTCEEEEEECS
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcC--CceEEEECchhhCCCCCCceeEEEEcC
Confidence 356789999999999874 45555654 999999999 9999999988776 358999999999887778999999965
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+.+++ .......++..+.++|||||+++..
T Consensus 98 ~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~ 127 (209)
T 2p8j_A 98 TIFHM-RKNDVKEAIDEIKRVLKPGGLACIN 127 (209)
T ss_dssp CGGGS-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hHHhC-CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 44433 2467889999999999999999864
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.56 E-value=6.7e-15 Score=134.16 Aligned_cols=98 Identities=17% Similarity=0.201 Sum_probs=83.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
.++.+|||||||+|.++..+++.+. +|+|+|+|+ +++.|+++... +++++.+|+.++ .++++||+|++..+.
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~-~~~~~fD~v~~~~~l 113 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD-----GITYIHSRFEDA-QLPRRYDNIVLTHVL 113 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGC-CCSSCEEEEEEESCG
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHc-CcCCcccEEEEhhHH
Confidence 4677899999999999999999866 899999999 99999987543 599999999988 455899999996554
Q ss_pred ccccChhhHHHHHHHHH-hcccCCcEEEec
Q 015534 200 YFLLFENMLNTVLYARD-KWLVDDGIVLPD 228 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~-~~LkpgG~lip~ 228 (405)
+ +..++..++.++. ++|||||+++..
T Consensus 114 ~---~~~~~~~~l~~~~~~~LkpgG~l~i~ 140 (250)
T 2p7i_A 114 E---HIDDPVALLKRINDDWLAEGGRLFLV 140 (250)
T ss_dssp G---GCSSHHHHHHHHHHTTEEEEEEEEEE
T ss_pred H---hhcCHHHHHHHHHHHhcCCCCEEEEE
Confidence 3 3356789999999 999999998863
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=6e-15 Score=137.73 Aligned_cols=101 Identities=20% Similarity=0.152 Sum_probs=87.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
..++.+|||+|||+|.+++.+++.|..+|+|+|+|+ +++.|++++..+++.++++++++|+.++.. .++||+|++++.
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p 201 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc
Confidence 356899999999999999999998776899999999 999999999999998889999999999876 489999999764
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
. ....++..+.++|+|||+++..
T Consensus 202 ~-------~~~~~l~~~~~~LkpgG~l~~~ 224 (278)
T 2frn_A 202 V-------RTHEFIPKALSIAKDGAIIHYH 224 (278)
T ss_dssp S-------SGGGGHHHHHHHEEEEEEEEEE
T ss_pred h-------hHHHHHHHHHHHCCCCeEEEEE
Confidence 2 2245677788999999999853
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=125.77 Aligned_cols=109 Identities=16% Similarity=0.109 Sum_probs=86.3
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc-ccCCCC
Q 015534 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-IELPVT 188 (405)
Q Consensus 112 ~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~ 188 (405)
..+.......++.+|||+|||+|.++..+++. +..+|+++|+|+ +++.|++++..+++++++ ++.+|..+ ++...+
T Consensus 15 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 15 ALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD 93 (178)
T ss_dssp HHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred HHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence 33444445678889999999999999999985 456999999999 999999999999987678 88888854 322227
Q ss_pred ceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+||+|++... +.+ ..++..+.++|+|||+++..
T Consensus 94 ~~D~i~~~~~---~~~----~~~l~~~~~~L~~gG~l~~~ 126 (178)
T 3hm2_A 94 NPDVIFIGGG---LTA----PGVFAAAWKRLPVGGRLVAN 126 (178)
T ss_dssp CCSEEEECC----TTC----TTHHHHHHHTCCTTCEEEEE
T ss_pred CCCEEEECCc---ccH----HHHHHHHHHhcCCCCEEEEE
Confidence 8999998543 222 56788889999999998853
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-14 Score=139.03 Aligned_cols=114 Identities=19% Similarity=0.252 Sum_probs=90.7
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHH-------HHcCCC-CcEEEEEcccc
Q 015534 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIV-------EANGFS-NVITVLKGKIE 181 (405)
Q Consensus 112 ~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~-------~~~~~~-~~i~~~~~d~~ 181 (405)
..+.......++.+|||||||+|.+++.+|. .|+.+|+|||+++ ++++|+++. ..+|+. ++|+|+++|+.
T Consensus 163 ~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~ 242 (438)
T 3uwp_A 163 AQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFL 242 (438)
T ss_dssp HHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTT
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECccc
Confidence 3344445678899999999999999999987 6777899999999 999998754 345653 67999999999
Q ss_pred cccCCC--CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 182 EIELPV--TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 182 ~~~~~~--~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+++++. ..||+|+++.+ ++ .+.+...+.++.+.|||||+||...
T Consensus 243 ~lp~~d~~~~aDVVf~Nn~---~F-~pdl~~aL~Ei~RvLKPGGrIVssE 288 (438)
T 3uwp_A 243 SEEWRERIANTSVIFVNNF---AF-GPEVDHQLKERFANMKEGGRIVSSK 288 (438)
T ss_dssp SHHHHHHHHTCSEEEECCT---TC-CHHHHHHHHHHHTTSCTTCEEEESS
T ss_pred CCccccccCCccEEEEccc---cc-CchHHHHHHHHHHcCCCCcEEEEee
Confidence 887642 47999999754 22 2566777788999999999998654
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-14 Score=132.79 Aligned_cols=99 Identities=16% Similarity=0.164 Sum_probs=86.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC---CCceeEEEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDIIIS 195 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~Iv~ 195 (405)
.++.+|||||||+|..++.++.. +..+|+++|+|+ +++.|++++..+++.+ ++++++|++++... .++||+|++
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~-v~~~~~d~~~~~~~~~~~~~fD~I~s 157 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKG-ARALWGRAEVLAREAGHREAYARAVA 157 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCc-eEEEECcHHHhhcccccCCCceEEEE
Confidence 56789999999999999999984 567999999999 9999999999999965 99999999988642 378999999
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
..+ ..+..++..+.++|||||+++.
T Consensus 158 ~a~-------~~~~~ll~~~~~~LkpgG~l~~ 182 (249)
T 3g89_A 158 RAV-------APLCVLSELLLPFLEVGGAAVA 182 (249)
T ss_dssp ESS-------CCHHHHHHHHGGGEEEEEEEEE
T ss_pred CCc-------CCHHHHHHHHHHHcCCCeEEEE
Confidence 654 3457889999999999999874
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-14 Score=124.22 Aligned_cols=111 Identities=21% Similarity=0.266 Sum_probs=91.1
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCC-cEEEEEcccccccCCCCcee
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKIEEIELPVTKVD 191 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~D 191 (405)
+.......++.+|||+|||+|.++..+++. ..+|+|+|+++ +++.|++++..+++++ +++++.+|+.+.. +.++||
T Consensus 44 l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D 121 (194)
T 1dus_A 44 LVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV-KDRKYN 121 (194)
T ss_dssp HHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC-TTSCEE
T ss_pred HHHHcccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccc-ccCCce
Confidence 333344568889999999999999999998 55999999999 9999999999988864 5999999998753 357999
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+|+++...+ ........++..+.++|+|||.++..
T Consensus 122 ~v~~~~~~~--~~~~~~~~~l~~~~~~L~~gG~l~~~ 156 (194)
T 1dus_A 122 KIITNPPIR--AGKEVLHRIIEEGKELLKDNGEIWVV 156 (194)
T ss_dssp EEEECCCST--TCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECCCcc--cchhHHHHHHHHHHHHcCCCCEEEEE
Confidence 999976422 12456778999999999999998853
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-14 Score=132.37 Aligned_cols=99 Identities=20% Similarity=0.205 Sum_probs=85.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC---CCceeEEEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDIIIS 195 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~Iv~ 195 (405)
.++.+|||||||+|.++..+++ .+..+|+|+|+|+ |++.|++++..+++++ ++++++|+.++..+ .++||+|++
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~V~~ 147 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLEN-TTFCHDRAETFGQRKDVRESYDIVTA 147 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEeccHHHhcccccccCCccEEEE
Confidence 4678999999999999999997 3456999999999 9999999999999864 99999999988753 478999998
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
..+ ..+..++..+.++|+|||.++.
T Consensus 148 ~~~-------~~~~~~l~~~~~~LkpgG~l~~ 172 (240)
T 1xdz_A 148 RAV-------ARLSVLSELCLPLVKKNGLFVA 172 (240)
T ss_dssp ECC-------SCHHHHHHHHGGGEEEEEEEEE
T ss_pred ecc-------CCHHHHHHHHHHhcCCCCEEEE
Confidence 543 3567899999999999999875
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.5e-15 Score=134.07 Aligned_cols=100 Identities=21% Similarity=0.250 Sum_probs=86.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
.++.+|||||||+|.++..+++.|. +|+|+|+|+ +++.|+++. ...+++++.+|+.+++++.++||+|++..+
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~- 125 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSLPFENEQFEAIMAINS- 125 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBCSSCTTCEEEEEEESC-
T ss_pred CCCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcCCCCCCCccEEEEcCh-
Confidence 4788999999999999999999966 999999999 999998764 225699999999999887799999999654
Q ss_pred ccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+.+......++..+.++|+|||+++..
T Consensus 126 --l~~~~~~~~~l~~~~~~L~pgG~l~i~ 152 (242)
T 3l8d_A 126 --LEWTEEPLRALNEIKRVLKSDGYACIA 152 (242)
T ss_dssp --TTSSSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred --HhhccCHHHHHHHHHHHhCCCeEEEEE
Confidence 444467788999999999999998854
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-14 Score=131.98 Aligned_cols=108 Identities=17% Similarity=0.208 Sum_probs=89.7
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (405)
+.......++.+|||||||+|.++..+++.|..+|+|+|+|+ +++.|+++... .+++++.+|+.+++++.++||+
T Consensus 35 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~ 110 (243)
T 3bkw_A 35 LRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLHLPQDSFDL 110 (243)
T ss_dssp HHHHSCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCCCCTTCEEE
T ss_pred HHHhccccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhccCCCCCceE
Confidence 333345567889999999999999999998767999999999 99999887543 3599999999998877789999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
|++..+.+ +...+..++..+.++|+|||+++..
T Consensus 111 v~~~~~l~---~~~~~~~~l~~~~~~L~pgG~l~~~ 143 (243)
T 3bkw_A 111 AYSSLALH---YVEDVARLFRTVHQALSPGGHFVFS 143 (243)
T ss_dssp EEEESCGG---GCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEecccc---ccchHHHHHHHHHHhcCcCcEEEEE
Confidence 99965433 3356788999999999999998864
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.4e-14 Score=128.00 Aligned_cols=117 Identities=11% Similarity=0.156 Sum_probs=93.5
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCC-CcEEEEEcccccc
Q 015534 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEI 183 (405)
Q Consensus 108 ~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~ 183 (405)
..+...+.......++.+|||||||+|..++.+++. + ..+|+++|+++ +++.|++++...++. ++++++.+|+.++
T Consensus 42 ~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~ 121 (221)
T 3dr5_A 42 GQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDV 121 (221)
T ss_dssp HHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH
T ss_pred HHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHH
Confidence 344455554444444569999999999999999984 3 46999999999 999999999999998 7899999999876
Q ss_pred c--CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCc
Q 015534 184 E--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 184 ~--~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
. ++.++||+|++... ......++..+.++|+|||+++....
T Consensus 122 l~~~~~~~fD~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~dn~ 164 (221)
T 3dr5_A 122 MSRLANDSYQLVFGQVS------PMDLKALVDAAWPLLRRGGALVLADA 164 (221)
T ss_dssp GGGSCTTCEEEEEECCC------TTTHHHHHHHHHHHEEEEEEEEETTT
T ss_pred HHHhcCCCcCeEEEcCc------HHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 3 33589999998542 23556788999999999999997653
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-14 Score=126.54 Aligned_cols=101 Identities=21% Similarity=0.251 Sum_probs=87.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
.++ +|||||||+|.++..+++.|. +|+|+|+|+ +++.|+++....+. +++++.+|+.+++++.++||+|++...
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~- 103 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFDIVADAWEGIVSIFC- 103 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBSCCTTTCSEEEEECC-
T ss_pred CCC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcCCCcCCccEEEEEhh-
Confidence 456 999999999999999999866 999999999 99999999988775 599999999998877789999998432
Q ss_pred ccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.........++..+.++|+|||.++..
T Consensus 104 --~~~~~~~~~~l~~~~~~L~pgG~l~~~ 130 (202)
T 2kw5_A 104 --HLPSSLRQQLYPKVYQGLKPGGVFILE 130 (202)
T ss_dssp --CCCHHHHHHHHHHHHTTCCSSEEEEEE
T ss_pred --cCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 224567889999999999999998853
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-14 Score=131.81 Aligned_cols=103 Identities=15% Similarity=0.066 Sum_probs=87.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (405)
++.+|||||||+|.++..+++.|. +|+|+|+|+ +++.|++++...+...+++++.+|+.++... ++||+|++..+.+
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~l~ 143 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPT-ELFDLIFDYVFFC 143 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCS-SCEEEEEEESSTT
T ss_pred CCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCC-CCeeEEEEChhhh
Confidence 445999999999999999988755 899999999 9999999988766667799999999998644 7999999966544
Q ss_pred cccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 201 FLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
++ .......++..+.++|||||.++.
T Consensus 144 ~~-~~~~~~~~l~~~~~~LkpgG~l~~ 169 (235)
T 3lcc_A 144 AI-EPEMRPAWAKSMYELLKPDGELIT 169 (235)
T ss_dssp TS-CGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred cC-CHHHHHHHHHHHHHHCCCCcEEEE
Confidence 43 234778999999999999999885
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.8e-14 Score=127.32 Aligned_cols=102 Identities=21% Similarity=0.176 Sum_probs=87.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
..++.+|||||||+|.+++.+++.| +.+|+|+|+++ +++.|++++..+++.++++++.+|..+...+.++||+|+...
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaG 98 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICG 98 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeC
Confidence 4577899999999999999999976 56899999999 999999999999999899999999988765534799988644
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
++. ..+..++......|+++|.+|
T Consensus 99 mGg-----~lI~~IL~~~~~~l~~~~~lI 122 (230)
T 3lec_A 99 MGG-----RLIADILNNDIDKLQHVKTLV 122 (230)
T ss_dssp ECH-----HHHHHHHHHTGGGGTTCCEEE
T ss_pred Cch-----HHHHHHHHHHHHHhCcCCEEE
Confidence 421 456788888889999999988
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.9e-14 Score=133.42 Aligned_cols=107 Identities=20% Similarity=0.209 Sum_probs=90.6
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 194 (405)
....++.+|||||||+|.++..+++. + ..+|+|+|+|+ +++.|++++...+. +++++.+|+.+++++ ++||+|+
T Consensus 18 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~-~~fD~v~ 94 (284)
T 3gu3_A 18 WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIELN-DKYDIAI 94 (284)
T ss_dssp SCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCCS-SCEEEEE
T ss_pred hccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhcCcC-CCeeEEE
Confidence 34567899999999999999999985 3 36999999999 99999999887664 699999999998875 7999999
Q ss_pred EccccccccChhhHHHHHHHHHhcccCCcEEEecCc
Q 015534 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
+..+.+ +..+...++..+.++|||||+++....
T Consensus 95 ~~~~l~---~~~~~~~~l~~~~~~LkpgG~l~~~~~ 127 (284)
T 3gu3_A 95 CHAFLL---HMTTPETMLQKMIHSVKKGGKIICFEP 127 (284)
T ss_dssp EESCGG---GCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ECChhh---cCCCHHHHHHHHHHHcCCCCEEEEEec
Confidence 976533 335678999999999999999986543
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-14 Score=133.05 Aligned_cols=100 Identities=21% Similarity=0.225 Sum_probs=85.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc-c
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW-M 198 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~-~ 198 (405)
.++.+|||||||+|.++..+++.|. +|+|+|+|+ +++.|+++.. +++++.+|+.++++ .++||+|++.. +
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~-~~~fD~v~~~~~~ 120 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNP------DAVLHHGDMRDFSL-GRRFSAVTCMFSS 120 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCCC-SCCEEEEEECTTG
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC------CCEEEECChHHCCc-cCCcCEEEEcCch
Confidence 4568999999999999999999865 999999999 9999998743 48999999999877 48999999975 5
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.+++.....+..++..+.++|||||.++..
T Consensus 121 l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 121 IGHLAGQAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp GGGSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred hhhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 455544467788999999999999999975
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-14 Score=129.23 Aligned_cols=98 Identities=27% Similarity=0.326 Sum_probs=83.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
.++.+|||||||+|.++..+++.+. +|+|+|+|+ +++.|++++. .+++++.+|+.+++++ ++||+|++..+.
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~~-~~fD~v~~~~~l 116 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEVP-TSIDTIVSTYAF 116 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCCC-SCCSEEEEESCG
T ss_pred cCCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCCC-CCeEEEEECcch
Confidence 4788999999999999999999865 999999999 9999998754 3589999999999887 999999997654
Q ss_pred ccccChhhHH--HHHHHHHhcccCCcEEEec
Q 015534 200 YFLLFENMLN--TVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 200 ~~l~~~~~~~--~~l~~~~~~LkpgG~lip~ 228 (405)
+++ .... .++..+.++|||||.++..
T Consensus 117 ~~~---~~~~~~~~l~~~~~~LkpgG~l~i~ 144 (220)
T 3hnr_A 117 HHL---TDDEKNVAIAKYSQLLNKGGKIVFA 144 (220)
T ss_dssp GGS---CHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred hcC---ChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 433 3433 4899999999999999864
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-14 Score=132.95 Aligned_cols=109 Identities=25% Similarity=0.234 Sum_probs=88.8
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHH---cCCCCcEEEEEccccccc-------C
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEA---NGFSNVITVLKGKIEEIE-------L 185 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~---~~~~~~i~~~~~d~~~~~-------~ 185 (405)
....++.+|||+|||+|.+++.+++.+ ..+|+|+|+++ +++.|++++.. +++.++++++++|+.++. +
T Consensus 32 ~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~ 111 (260)
T 2ozv_A 32 VADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGL 111 (260)
T ss_dssp CCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTC
T ss_pred hcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhcc
Confidence 345677899999999999999999964 46999999999 99999999998 888878999999998872 4
Q ss_pred CCCceeEEEEcccccccc----------------ChhhHHHHHHHHHhcccCCcEEEe
Q 015534 186 PVTKVDIIISEWMGYFLL----------------FENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~----------------~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+.++||+|++++. ++.. ....+..++..+.++|||||+++.
T Consensus 112 ~~~~fD~Vv~nPP-y~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~ 168 (260)
T 2ozv_A 112 PDEHFHHVIMNPP-YNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSL 168 (260)
T ss_dssp CTTCEEEEEECCC-C---------------------CCHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCcCEEEECCC-CcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEE
Confidence 4579999999864 2211 112367889999999999999874
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-14 Score=124.36 Aligned_cols=112 Identities=13% Similarity=0.059 Sum_probs=86.0
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (405)
.+.+...+.... .+..+|||||||+|.+++.++.. +..+|+|+|+|+ |++++++++..+|...++++ .|.....
T Consensus 36 ld~fY~~~~~~l--~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~ 111 (200)
T 3fzg_A 36 LNDFYTYVFGNI--KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDV 111 (200)
T ss_dssp HHHHHHHHHHHS--CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHH
T ss_pred HHHHHHHHHhhc--CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccC
Confidence 334444444333 55789999999999999999884 444999999999 99999999999998766777 5555443
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
+.++||+|++.-+.+++ ...+..+..+.+.|+|||++|
T Consensus 112 -~~~~~DvVLa~k~LHlL---~~~~~al~~v~~~L~pggvfI 149 (200)
T 3fzg_A 112 -YKGTYDVVFLLKMLPVL---KQQDVNILDFLQLFHTQNFVI 149 (200)
T ss_dssp -TTSEEEEEEEETCHHHH---HHTTCCHHHHHHTCEEEEEEE
T ss_pred -CCCCcChhhHhhHHHhh---hhhHHHHHHHHHHhCCCCEEE
Confidence 34899999996655555 344455557889999999988
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.1e-14 Score=127.28 Aligned_cols=107 Identities=24% Similarity=0.238 Sum_probs=86.3
Q ss_pred CCCCCCEEEEEcCC-CcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEEE
Q 015534 119 FLFKDKVVLDVGAG-TGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIIS 195 (405)
Q Consensus 119 ~~~~~~~VLDiGcG-~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Iv~ 195 (405)
...++.+|||+||| +|.++..+++.+..+|+|+|+|+ +++.|++++..+++ +++++++|+..+. ++.++||+|++
T Consensus 52 ~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~~fD~I~~ 129 (230)
T 3evz_A 52 FLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKGVVEGTFDVIFS 129 (230)
T ss_dssp TCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTTTCCSCEEEEEE
T ss_pred hcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhhcccCceeEEEE
Confidence 34678999999999 99999999997445999999999 99999999999987 5999999975442 44589999999
Q ss_pred ccccccc----------------cChhhHHHHHHHHHhcccCCcEEEe
Q 015534 196 EWMGYFL----------------LFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 196 ~~~~~~l----------------~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
++..+.. .+...+..++..+.++|||||+++.
T Consensus 130 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 177 (230)
T 3evz_A 130 APPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVAL 177 (230)
T ss_dssp CCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEE
Confidence 8642211 1112347889999999999999875
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.2e-14 Score=127.44 Aligned_cols=103 Identities=22% Similarity=0.273 Sum_probs=87.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
..++.+|||||||+|.+++.+++.| ..+|+|+|+++ +++.|++++..+++.++|+++.+|..+...+..+||+|+...
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviag 98 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAG 98 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeC
Confidence 4577899999999999999999976 56899999999 999999999999998899999999988765433699988644
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
++ -..+..++......|+++|++|.
T Consensus 99 mG-----g~lI~~IL~~~~~~L~~~~~lIl 123 (244)
T 3gnl_A 99 MG-----GTLIRTILEEGAAKLAGVTKLIL 123 (244)
T ss_dssp EC-----HHHHHHHHHHTGGGGTTCCEEEE
T ss_pred Cc-----hHHHHHHHHHHHHHhCCCCEEEE
Confidence 32 24567888888999999999883
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=5.8e-14 Score=125.88 Aligned_cols=103 Identities=20% Similarity=0.182 Sum_probs=86.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
..++.+|||||||+|.+++.+++.+ ..+|+|+|+++ +++.|++++..+++.++|+++.+|..+...+..+||+|+...
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG 92 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAG 92 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcC
Confidence 4577899999999999999999976 56899999999 999999999999998899999999965422213699988644
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
++ -..+..++......|+|+|++|.
T Consensus 93 ~G-----g~~i~~Il~~~~~~L~~~~~lVl 117 (225)
T 3kr9_A 93 MG-----GRLIARILEEGLGKLANVERLIL 117 (225)
T ss_dssp EC-----HHHHHHHHHHTGGGCTTCCEEEE
T ss_pred CC-----hHHHHHHHHHHHHHhCCCCEEEE
Confidence 42 23467889999999999999884
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.2e-14 Score=125.26 Aligned_cols=102 Identities=15% Similarity=0.125 Sum_probs=85.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
..++.+|||||||+|.++..+++.|. +|+|+|+|+ +++.|++ .+. .+++++.+|+.++ ++.++||+|++..+
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~-~~~~~~D~v~~~~~ 116 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDW-TPDRQWDAVFFAHW 116 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSC-CCSSCEEEEEEESC
T ss_pred CCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccC-CCCCceeEEEEech
Confidence 56778999999999999999999865 999999999 9999987 444 4599999999988 66689999999765
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
.+++. .+....++..+.++|+|||.++...
T Consensus 117 l~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~ 146 (218)
T 3ou2_A 117 LAHVP-DDRFEAFWESVRSAVAPGGVVEFVD 146 (218)
T ss_dssp GGGSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcCC-HHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 44442 2335789999999999999988643
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.4e-14 Score=126.59 Aligned_cols=95 Identities=22% Similarity=0.239 Sum_probs=81.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (405)
++.+|||||||+|.++..+ +..+|+|+|+|+ +++.|+++. .+++++.+|+.++++++++||+|++..+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~-- 104 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEALPFPGESFDVVLLFTT-- 104 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSCCSCSSCEEEEEEESC--
T ss_pred CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccCCCCCCcEEEEEEcCh--
Confidence 7889999999999998877 556999999999 999999876 3488999999998887789999999654
Q ss_pred cccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 201 FLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+.+..++..++..+.++|||||.++..
T Consensus 105 -l~~~~~~~~~l~~~~~~L~pgG~l~i~ 131 (211)
T 2gs9_A 105 -LEFVEDVERVLLEARRVLRPGGALVVG 131 (211)
T ss_dssp -TTTCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred -hhhcCCHHHHHHHHHHHcCCCCEEEEE
Confidence 334457789999999999999998853
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.52 E-value=7.7e-14 Score=124.87 Aligned_cols=106 Identities=16% Similarity=0.165 Sum_probs=86.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISE 196 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~ 196 (405)
.++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|++++..+++ ++++++.+|+.+++ ++.++||+|+++
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~D~i~~~ 118 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLN 118 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCCCCCCEEEEE
Confidence 35779999999999999999985 356999999999 99999999999988 56999999999876 666889999997
Q ss_pred ccccccc--Ch---hhHHHHHHHHHhcccCCcEEEe
Q 015534 197 WMGYFLL--FE---NMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 197 ~~~~~l~--~~---~~~~~~l~~~~~~LkpgG~lip 227 (405)
....... ++ .....++..+.++|+|||.++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (214)
T 1yzh_A 119 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHF 154 (214)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEE
T ss_pred CCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEE
Confidence 5321110 00 0235788999999999999875
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.52 E-value=9e-14 Score=123.83 Aligned_cols=103 Identities=19% Similarity=0.116 Sum_probs=84.8
Q ss_pred HhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEE
Q 015534 115 YQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193 (405)
Q Consensus 115 ~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~I 193 (405)
.......++.+|||||||+|.++..+++.+ .+|+++|+++ +++.|++++..++++ +++++.+|+.+...+.++||+|
T Consensus 70 ~~~l~~~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~D~i 147 (210)
T 3lbf_A 70 TELLELTPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQGWQARAPFDAI 147 (210)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGGCCEEEE
T ss_pred HHhcCCCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccCCccCCCccEE
Confidence 333456788999999999999999999984 5999999999 999999999998886 6999999998866555799999
Q ss_pred EEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
++......+. ..+.++|||||+++..
T Consensus 148 ~~~~~~~~~~---------~~~~~~L~pgG~lv~~ 173 (210)
T 3lbf_A 148 IVTAAPPEIP---------TALMTQLDEGGILVLP 173 (210)
T ss_dssp EESSBCSSCC---------THHHHTEEEEEEEEEE
T ss_pred EEccchhhhh---------HHHHHhcccCcEEEEE
Confidence 9965433222 2467899999998854
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.2e-14 Score=124.46 Aligned_cols=99 Identities=29% Similarity=0.402 Sum_probs=86.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
..++.+|||+|||+|.++..+++.|..+|+|+|+|+ +++.|++++..+++.+ ++++.+|+.+.. .++||+|+++.+
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~--~~~fD~i~~~~~ 134 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADV--DGKFDLIVANIL 134 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTC--CSCEEEEEEESC
T ss_pred ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccC--CCCceEEEECCc
Confidence 357889999999999999999998888999999999 9999999999999866 999999997753 489999999754
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
. ..+..++..+.++|+|||+++.
T Consensus 135 ~------~~~~~~l~~~~~~L~~gG~l~~ 157 (205)
T 3grz_A 135 A------EILLDLIPQLDSHLNEDGQVIF 157 (205)
T ss_dssp H------HHHHHHGGGSGGGEEEEEEEEE
T ss_pred H------HHHHHHHHHHHHhcCCCCEEEE
Confidence 2 3457888999999999999885
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=5.6e-14 Score=126.43 Aligned_cols=107 Identities=20% Similarity=0.301 Sum_probs=84.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc-c-CC----CCcee
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-E-LP----VTKVD 191 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~~----~~~~D 191 (405)
.++.+|||||||+|..+..+++. + ..+|+++|+++ +++.|++++..+++.++++++.+|+.+. + ++ .++||
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 46789999999999999999984 2 46999999999 9999999999999988899999998664 2 22 16899
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCce
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
+|+++.... +......++..+ ++|+|||+++.....
T Consensus 137 ~V~~d~~~~---~~~~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 137 MVFLDHWKD---RYLPDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp EEEECSCGG---GHHHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred EEEEcCCcc---cchHHHHHHHhc-cccCCCeEEEEeCCC
Confidence 999864321 122333566666 999999999976543
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.4e-14 Score=129.92 Aligned_cols=107 Identities=14% Similarity=0.098 Sum_probs=81.1
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-----
Q 015534 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----- 185 (405)
Q Consensus 112 ~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----- 185 (405)
..+.......++.+|||||||+|.++..+++.|+ +|+|+|+|+ |++.|++++..+ ++..++.++..
T Consensus 35 ~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~-------~v~~~~~~~~~~~~~~ 106 (261)
T 3iv6_A 35 ENDIFLENIVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADR-------CVTIDLLDITAEIPKE 106 (261)
T ss_dssp HHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSS-------CCEEEECCTTSCCCGG
T ss_pred HHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhc-------cceeeeeecccccccc
Confidence 3344456677889999999999999999999876 999999999 999999987654 22333333322
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
..++||+|+++.+.+++ .......++..+.++| |||+++.+
T Consensus 107 ~~~~fD~Vv~~~~l~~~-~~~~~~~~l~~l~~lL-PGG~l~lS 147 (261)
T 3iv6_A 107 LAGHFDFVLNDRLINRF-TTEEARRACLGMLSLV-GSGTVRAS 147 (261)
T ss_dssp GTTCCSEEEEESCGGGS-CHHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred cCCCccEEEEhhhhHhC-CHHHHHHHHHHHHHhC-cCcEEEEE
Confidence 13789999997654433 3346678899999999 99999854
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.2e-14 Score=125.99 Aligned_cols=98 Identities=23% Similarity=0.268 Sum_probs=84.0
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccccc
Q 015534 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (405)
Q Consensus 123 ~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~ 201 (405)
+.+|||||||+|.++..+++.|. +|+|+|+|+ |++.|+++. .+++++.+|+.++++++++||+|++..+.++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 114 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTH------PSVTFHHGTITDLSDSPKRWAGLLAWYSLIH 114 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHC------TTSEEECCCGGGGGGSCCCEEEEEEESSSTT
T ss_pred CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhC------CCCeEEeCcccccccCCCCeEEEEehhhHhc
Confidence 77999999999999999999866 999999999 999999872 3589999999999887789999999655443
Q ss_pred ccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 202 LLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+ ....+..++..+.++|+|||.++..
T Consensus 115 ~-~~~~~~~~l~~~~~~L~pgG~l~i~ 140 (203)
T 3h2b_A 115 M-GPGELPDALVALRMAVEDGGGLLMS 140 (203)
T ss_dssp C-CTTTHHHHHHHHHHTEEEEEEEEEE
T ss_pred C-CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 3 2247789999999999999998853
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.5e-14 Score=127.65 Aligned_cols=103 Identities=16% Similarity=0.228 Sum_probs=86.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc-cC-C-CCceeEEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-EL-P-VTKVDIII 194 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~-~-~~~~D~Iv 194 (405)
.++.+|||||||+|..+..+++. + ..+|+++|+++ +++.|++++...++.++++++.+|+.+. +. . .++||+|+
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~ 141 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF 141 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence 46789999999999999999995 3 56999999999 9999999999999988899999999774 22 1 24899999
Q ss_pred EccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+... ......++..+.++|||||+++...
T Consensus 142 ~d~~------~~~~~~~l~~~~~~LkpGG~lv~~~ 170 (248)
T 3tfw_A 142 IDAD------KPNNPHYLRWALRYSRPGTLIIGDN 170 (248)
T ss_dssp ECSC------GGGHHHHHHHHHHTCCTTCEEEEEC
T ss_pred ECCc------hHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 8542 2456678999999999999998654
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.4e-14 Score=126.97 Aligned_cols=105 Identities=15% Similarity=0.150 Sum_probs=84.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc-c--CCCCceeEEEEc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-E--LPVTKVDIIISE 196 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~--~~~~~~D~Iv~~ 196 (405)
++.+|||||||+|.++..+|+. +...|+|+|+|+ +++.|++++..+++.+ ++++.+|+.++ + +++++||.|++.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~n-v~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSN-LRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSS-EEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHHcCCCChheEEEe
Confidence 5679999999999999999985 456899999999 9999999999999864 99999999885 2 567899999986
Q ss_pred cccccccChhh------HHHHHHHHHhcccCCcEEEec
Q 015534 197 WMGYFLLFENM------LNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 197 ~~~~~l~~~~~------~~~~l~~~~~~LkpgG~lip~ 228 (405)
...... .... .+.++..+.++|||||+++..
T Consensus 113 ~~~p~~-~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~ 149 (218)
T 3dxy_A 113 FPDPWH-KARHNKRRIVQVPFAELVKSKLQLGGVFHMA 149 (218)
T ss_dssp SCCCCC-SGGGGGGSSCSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCcc-chhhhhhhhhhHHHHHHHHHHcCCCcEEEEE
Confidence 322211 1111 135899999999999998753
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.6e-14 Score=124.78 Aligned_cols=99 Identities=19% Similarity=0.171 Sum_probs=84.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
..++.+|||||||+|.++..+++.|. +|+|+|+|+ +++.|++++ +++++.+|+..++ +.++||+|++..+
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~-~~~~fD~v~~~~~ 111 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL-------GRPVRTMLFHQLD-AIDAYDAVWAHAC 111 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCC-CCSCEEEEEECSC
T ss_pred cCCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc-------CCceEEeeeccCC-CCCcEEEEEecCc
Confidence 45788999999999999999999866 999999999 999999886 2678899999988 5689999999765
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.+++. ...+..++..+.++|||||+++..
T Consensus 112 l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~ 140 (211)
T 3e23_A 112 LLHVP-RDELADVLKLIWRALKPGGLFYAS 140 (211)
T ss_dssp GGGSC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhcC-HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 44432 347789999999999999999863
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=8.5e-14 Score=121.52 Aligned_cols=107 Identities=23% Similarity=0.270 Sum_probs=88.9
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC-Ccee
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV-TKVD 191 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D 191 (405)
+.......++.+|||+|||+|.++..+++.+ .+|+++|+++ +++.|++++..+++.++++++.+|+.+. ++. ++||
T Consensus 25 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D 102 (192)
T 1l3i_A 25 IMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA-LCKIPDID 102 (192)
T ss_dssp HHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH-HTTSCCEE
T ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHh-cccCCCCC
Confidence 3333456788999999999999999999987 7999999999 9999999999998866799999999872 222 5899
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+|++... + ..+..++..+.++|+|||.++..
T Consensus 103 ~v~~~~~---~---~~~~~~l~~~~~~l~~gG~l~~~ 133 (192)
T 1l3i_A 103 IAVVGGS---G---GELQEILRIIKDKLKPGGRIIVT 133 (192)
T ss_dssp EEEESCC---T---TCHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEECCc---h---HHHHHHHHHHHHhcCCCcEEEEE
Confidence 9998643 2 24578899999999999998853
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.7e-14 Score=127.47 Aligned_cols=103 Identities=22% Similarity=0.279 Sum_probs=87.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC--CCCceeEEEEc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL--PVTKVDIIISE 196 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~D~Iv~~ 196 (405)
.++.+|||||||+|..+..+++. +..+|+++|+++ +++.|++++...++.++++++.+|+.+... ..++||+|++.
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 46789999999999999999994 356999999999 999999999999998789999999987522 14899999975
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
.. ......++..+.++|+|||+++...
T Consensus 150 ~~------~~~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 150 AA------KAQSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp TT------SSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred Cc------HHHHHHHHHHHHHhcCCCeEEEEee
Confidence 32 2456778999999999999998643
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=8.9e-14 Score=131.88 Aligned_cols=108 Identities=15% Similarity=0.116 Sum_probs=88.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcC------CCCcEEEEEccccccc----CC--C
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANG------FSNVITVLKGKIEEIE----LP--V 187 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~------~~~~i~~~~~d~~~~~----~~--~ 187 (405)
.++.+|||||||+|.++..+++.+..+|+|+|+|+ |++.|+++....+ ...+++++++|+.+++ ++ .
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 36789999999999999999987677999999999 9999999887642 2246999999999875 43 3
Q ss_pred CceeEEEEccccccc-cChhhHHHHHHHHHhcccCCcEEEec
Q 015534 188 TKVDIIISEWMGYFL-LFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l-~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
++||+|++..+.+++ .+...+..++..+.++|||||.++..
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGT 154 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 589999997654444 45567789999999999999999854
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.51 E-value=4.8e-14 Score=125.24 Aligned_cols=98 Identities=18% Similarity=0.238 Sum_probs=85.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
++.+|||+|||+|.++..+++. +..+|+|+|+|+ +++.|++++..+++++ ++++.+|+.+.. +.++||+|++..+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~-~~~~~D~i~~~~~- 141 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFP-SEPPFDGVISRAF- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSC-CCSCEEEEECSCS-
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEecchhhCC-ccCCcCEEEEecc-
Confidence 5789999999999999999984 556999999999 9999999999998865 999999998876 3478999998543
Q ss_pred ccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
..+..++..+.++|+|||.++..
T Consensus 142 ------~~~~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 142 ------ASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp ------SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred ------CCHHHHHHHHHHhcCCCcEEEEE
Confidence 34678899999999999998854
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=134.47 Aligned_cols=118 Identities=21% Similarity=0.222 Sum_probs=95.5
Q ss_pred HHHHHHHHHhcc--CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc
Q 015534 107 TKSYQNVIYQNK--FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (405)
Q Consensus 107 ~~~~~~~i~~~~--~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (405)
...+.+.+.... ...++.+|||+|||+|.++..+++.|. +|+++|+|+ +++.|++++..+++. ++++.+|+.+.
T Consensus 216 t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~~--v~~~~~D~~~~ 292 (381)
T 3dmg_A 216 SLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALK--AQALHSDVDEA 292 (381)
T ss_dssp HHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTT
T ss_pred HHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCC--eEEEEcchhhc
Confidence 344555554332 234778999999999999999999866 999999999 999999999999874 89999999988
Q ss_pred cCCCCceeEEEEccccccc--cChhhHHHHHHHHHhcccCCcEEEe
Q 015534 184 ELPVTKVDIIISEWMGYFL--LFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l--~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
..+.++||+|++++..+.. ........++..+.++|+|||+++.
T Consensus 293 ~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~i 338 (381)
T 3dmg_A 293 LTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFL 338 (381)
T ss_dssp SCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEE
Confidence 7656899999998754331 1135677899999999999999885
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=7.7e-14 Score=128.40 Aligned_cols=108 Identities=22% Similarity=0.357 Sum_probs=89.5
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (405)
.+.+++... ..++.+|||+|||+|.++..+++.|+ +|+|+|+++ +++.|++++..+++. ++++.+|+.+. ++.
T Consensus 109 ~~~~~l~~~--~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~-~~~ 182 (254)
T 2nxc_A 109 LALKALARH--LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAA-LPF 182 (254)
T ss_dssp HHHHHHHHH--CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHH-GGG
T ss_pred HHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhc-CcC
Confidence 344455433 46788999999999999999999888 999999999 999999999999875 89999998874 334
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
++||+|+++.+. ..+..++..+.++|+|||+++..
T Consensus 183 ~~fD~Vv~n~~~------~~~~~~l~~~~~~LkpgG~lils 217 (254)
T 2nxc_A 183 GPFDLLVANLYA------ELHAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp CCEEEEEEECCH------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCEEEECCcH------HHHHHHHHHHHHHcCCCCEEEEE
Confidence 789999997542 34568889999999999999853
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-14 Score=132.72 Aligned_cols=106 Identities=31% Similarity=0.305 Sum_probs=87.2
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (405)
+.+.+.......++.+|||||||+|.++..+++.+ .+|+|+|+|+ |++.|+++. +++++.+|+++++++++
T Consensus 22 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~~~~ 93 (261)
T 3ege_A 22 IVNAIINLLNLPKGSVIADIGAGTGGYSVALANQG-LFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENLALPDK 93 (261)
T ss_dssp HHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTT-CEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSCCSCTT
T ss_pred HHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCC-CEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhCCCCCC
Confidence 34444444556788999999999999999999965 4999999999 999876643 59999999999988778
Q ss_pred ceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+||+|++..+.++ ..++..++..+.++|| ||+++.
T Consensus 94 ~fD~v~~~~~l~~---~~~~~~~l~~~~~~Lk-gG~~~~ 128 (261)
T 3ege_A 94 SVDGVISILAIHH---FSHLEKSFQEMQRIIR-DGTIVL 128 (261)
T ss_dssp CBSEEEEESCGGG---CSSHHHHHHHHHHHBC-SSCEEE
T ss_pred CEeEEEEcchHhh---ccCHHHHHHHHHHHhC-CcEEEE
Confidence 9999999765333 3678899999999999 997764
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.51 E-value=5.1e-14 Score=137.43 Aligned_cols=107 Identities=27% Similarity=0.354 Sum_probs=89.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHc-----C-CC-CcEEEEEcccccc------
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEAN-----G-FS-NVITVLKGKIEEI------ 183 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~-----~-~~-~~i~~~~~d~~~~------ 183 (405)
..++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|++++..+ | +. .+++++.+|+.++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 457889999999999999999984 345999999999 999999988765 3 22 4699999999987
Q ss_pred cCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
++++++||+|+++.+.+++ .++..++..+.++|||||+++...
T Consensus 161 ~~~~~~fD~V~~~~~l~~~---~d~~~~l~~~~r~LkpgG~l~i~~ 203 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLS---TNKLALFKEIHRVLRDGGELYFSD 203 (383)
T ss_dssp CCCTTCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCCEEEEEEccchhcC---CCHHHHHHHHHHHcCCCCEEEEEE
Confidence 7777899999997664433 567899999999999999998643
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.50 E-value=6.4e-14 Score=133.81 Aligned_cols=106 Identities=23% Similarity=0.146 Sum_probs=87.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCC-cEEEEEcccccccCC----CCceeEEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKIEEIELP----VTKVDIII 194 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~~----~~~~D~Iv 194 (405)
.++.+|||+|||+|.+++.+++.|+ +|+++|+|+ +++.|++++..+++.+ +++++++|+.++... .++||+|+
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 4678999999999999999999888 999999999 9999999999999876 599999999876421 36899999
Q ss_pred Ecccccccc-------ChhhHHHHHHHHHhcccCCcEEEe
Q 015534 195 SEWMGYFLL-------FENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 195 ~~~~~~~l~-------~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+++..+... .......++..+.++|+|||.++.
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli 270 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLV 270 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEE
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEE
Confidence 987432221 234567889999999999999664
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-13 Score=122.99 Aligned_cols=101 Identities=25% Similarity=0.231 Sum_probs=79.9
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc----cCCCCceeE
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI----ELPVTKVDI 192 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~D~ 192 (405)
...++.+|||||||+|.++..+++. |..+|+|+|+|+ |++.+.+..+.. .++.++.+|+... +++ ++||+
T Consensus 54 ~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~-~~fD~ 129 (210)
T 1nt2_A 54 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIV-EKVDL 129 (210)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTC-CCEEE
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhcccc-cceeE
Confidence 4567889999999999999999985 446999999999 998777766653 3589999998774 344 78999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
|+++.. .......++.++.++|||||+++..
T Consensus 130 V~~~~~-----~~~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 130 IYQDIA-----QKNQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp EEECCC-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEecc-----ChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 999732 2234455689999999999998853
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.8e-14 Score=127.82 Aligned_cols=105 Identities=15% Similarity=0.161 Sum_probs=86.7
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCcee
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (405)
+.......++.+|||||||+|.++..+++. +..+|+|+|+|+ |++.|+++ . .+++++.+|+.+++ ++++||
T Consensus 25 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-----~-~~~~~~~~d~~~~~-~~~~fD 97 (259)
T 2p35_A 25 LLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR-----L-PNTNFGKADLATWK-PAQKAD 97 (259)
T ss_dssp HHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH-----S-TTSEEEECCTTTCC-CSSCEE
T ss_pred HHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----C-CCcEEEECChhhcC-ccCCcC
Confidence 344455567889999999999999999985 345999999999 99999887 1 45899999999887 668999
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+|++..+.+++ .++..++..+.++|+|||.++..
T Consensus 98 ~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~ 131 (259)
T 2p35_A 98 LLYANAVFQWV---PDHLAVLSQLMDQLESGGVLAVQ 131 (259)
T ss_dssp EEEEESCGGGS---TTHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEEEeCchhhC---CCHHHHHHHHHHhcCCCeEEEEE
Confidence 99996554433 57789999999999999998864
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-13 Score=119.10 Aligned_cols=103 Identities=22% Similarity=0.282 Sum_probs=85.9
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (405)
+.......++.+|||+|||+|.++..+++ +..+|+|+|+++ +++.|++++..+++ .+++++.+|+.+ .++.++||+
T Consensus 27 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~-~~~~~~~D~ 103 (183)
T 2yxd_A 27 SIGKLNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKGRAED-VLDKLEFNK 103 (183)
T ss_dssp HHHHHCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEESCHHH-HGGGCCCSE
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEECCccc-cccCCCCcE
Confidence 33334556788999999999999999999 566999999999 99999999999988 469999999988 555578999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
|++..+ .....++..+.++ |||.++..
T Consensus 104 i~~~~~-------~~~~~~l~~~~~~--~gG~l~~~ 130 (183)
T 2yxd_A 104 AFIGGT-------KNIEKIIEILDKK--KINHIVAN 130 (183)
T ss_dssp EEECSC-------SCHHHHHHHHHHT--TCCEEEEE
T ss_pred EEECCc-------ccHHHHHHHHhhC--CCCEEEEE
Confidence 999654 4567788888887 99998853
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=6e-15 Score=134.49 Aligned_cols=103 Identities=19% Similarity=0.210 Sum_probs=86.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
.++.+|||+|||+|.++..+++.| .+|+|+|+|+ +++.|++++..+++.++++++++|+.++. +.++||+|+++++.
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPW 154 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCC
T ss_pred cCCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCc
Confidence 378899999999999999999987 6999999999 99999999999998768999999999887 44799999998653
Q ss_pred ccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+.. ......+..+.++|+|||.++..
T Consensus 155 ~~~---~~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 155 GGP---DYATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp SSG---GGGGSSSBCTTTSCSSCHHHHHH
T ss_pred CCc---chhhhHHHHHHhhcCCcceeHHH
Confidence 332 33333556678999999987654
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-13 Score=124.56 Aligned_cols=110 Identities=19% Similarity=0.243 Sum_probs=88.1
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (405)
.+.+.+.... .++.+|||||||+|.++..+++.+. +|+|+|+|+ +++.|+++. .+++++.+|+.++++ .
T Consensus 29 ~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~-~ 98 (239)
T 3bxo_A 29 DIADLVRSRT--PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRL------PDATLHQGDMRDFRL-G 98 (239)
T ss_dssp HHHHHHHHHC--TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCCC-S
T ss_pred HHHHHHHHhc--CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHccc-C
Confidence 3344444322 5778999999999999999999766 999999999 999998864 248999999998876 4
Q ss_pred CceeEEEEcc-ccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 188 TKVDIIISEW-MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 188 ~~~D~Iv~~~-~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
++||+|+|.. +.+++.....+..++..+.++|+|||.++..
T Consensus 99 ~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (239)
T 3bxo_A 99 RKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVE 140 (239)
T ss_dssp SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred CCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 8999999632 3344444567789999999999999999865
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=123.37 Aligned_cols=106 Identities=14% Similarity=0.141 Sum_probs=84.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEcc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEW 197 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~~ 197 (405)
++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|++++..++++ +++++.+|+.+++ ++.++||.|++..
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~-nv~~~~~d~~~l~~~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVFEPGEVKRVYLNF 116 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCC-CEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence 5679999999999999999985 456999999999 999999999999884 5999999998875 5668899998753
Q ss_pred cccccc--Ch---hhHHHHHHHHHhcccCCcEEEec
Q 015534 198 MGYFLL--FE---NMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 198 ~~~~l~--~~---~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
...... +. -....++..+.++|||||.++..
T Consensus 117 ~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~ 152 (213)
T 2fca_A 117 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK 152 (213)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred CCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEE
Confidence 221110 00 01367899999999999998853
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=133.84 Aligned_cols=114 Identities=15% Similarity=0.085 Sum_probs=90.4
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCCCC--cEEEEEcccccccCCCC
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSN--VITVLKGKIEEIELPVT 188 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~--~i~~~~~d~~~~~~~~~ 188 (405)
.+.......++.+|||+|||+|.++..+++.+ ..+|+|+|+|+ +++.|++++..+++.+ +++++.+|+.+. ++.+
T Consensus 213 ~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~-~~~~ 291 (375)
T 4dcm_A 213 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPF 291 (375)
T ss_dssp HHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTT-CCTT
T ss_pred HHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhcc-CCCC
Confidence 34444555667899999999999999999964 56999999999 9999999999998753 588999999874 4557
Q ss_pred ceeEEEEccccccc--cChhhHHHHHHHHHhcccCCcEEEe
Q 015534 189 KVDIIISEWMGYFL--LFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l--~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+||+|++++..+.. ........++..+.++|||||+++.
T Consensus 292 ~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 332 (375)
T 4dcm_A 292 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYI 332 (375)
T ss_dssp CEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEE
T ss_pred CeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 99999998753321 1123445789999999999999885
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.6e-14 Score=130.82 Aligned_cols=99 Identities=20% Similarity=0.165 Sum_probs=85.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
..+|.+|||+|||+|.+++.+|+.|+++|+|+|+|+ +++.++++++.|++.++++++++|..++... +.||.|+++++
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~-~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE-NIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC-SCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccc-cCCCEEEECCC
Confidence 468999999999999999999999888999999999 9999999999999999999999999988654 89999998764
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
... ..++..+.++|||||++.
T Consensus 202 ~~~-------~~~l~~a~~~lk~gG~ih 222 (278)
T 3k6r_A 202 VRT-------HEFIPKALSIAKDGAIIH 222 (278)
T ss_dssp SSG-------GGGHHHHHHHEEEEEEEE
T ss_pred CcH-------HHHHHHHHHHcCCCCEEE
Confidence 322 234555668899999875
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.49 E-value=6e-14 Score=127.75 Aligned_cols=98 Identities=19% Similarity=0.244 Sum_probs=82.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc--cCCCCceeEEEEc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--ELPVTKVDIIISE 196 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~Iv~~ 196 (405)
..++.+|||||||+|.++..+++.|. +|+|+|+|+ +++.|+++ ++++.+|+.+. ++++++||+|++.
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~~~~~fD~i~~~ 108 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSLPDKYLDGVMIS 108 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTSCTTCBSEEEEE
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhcCCCCeeEEEEC
Confidence 45678999999999999999999866 899999999 99998865 68899999886 5667899999997
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.+.+++. .+.+..++..+.++|||||+++..
T Consensus 109 ~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~ 139 (240)
T 3dli_A 109 HFVEHLD-PERLFELLSLCYSKMKYSSYIVIE 139 (240)
T ss_dssp SCGGGSC-GGGHHHHHHHHHHHBCTTCCEEEE
T ss_pred CchhhCC-cHHHHHHHHHHHHHcCCCcEEEEE
Confidence 6544442 346689999999999999999863
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.49 E-value=7e-14 Score=130.34 Aligned_cols=99 Identities=19% Similarity=0.238 Sum_probs=83.6
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
...++.+|||||||+|.++..+++.+ .+|+|+|+|+ |++.|+++. .+++++.+|+.+++++ ++||+|++..
T Consensus 54 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~-~~fD~v~~~~ 125 (279)
T 3ccf_A 54 NPQPGEFILDLGCGTGQLTEKIAQSG-AEVLGTDNAATMIEKARQNY------PHLHFDVADARNFRVD-KPLDAVFSNA 125 (279)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTCCCS-SCEEEEEEES
T ss_pred CCCCCCEEEEecCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHhhC------CCCEEEECChhhCCcC-CCcCEEEEcc
Confidence 35678899999999999999999954 4999999999 999998764 3488999999998874 8999999965
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+.+++ .++..++..+.++|||||+++..
T Consensus 126 ~l~~~---~d~~~~l~~~~~~LkpgG~l~~~ 153 (279)
T 3ccf_A 126 MLHWV---KEPEAAIASIHQALKSGGRFVAE 153 (279)
T ss_dssp CGGGC---SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhC---cCHHHHHHHHHHhcCCCcEEEEE
Confidence 53333 56788999999999999998853
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.2e-14 Score=131.24 Aligned_cols=105 Identities=20% Similarity=0.162 Sum_probs=77.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHH----H-cCCCeE--EEEechH-HHHHHHHHHHHc-CCCC-cEEEEEccccccc------
Q 015534 121 FKDKVVLDVGAGTGILSLFCA----K-AGAAHV--YAVECSQ-MANMAKQIVEAN-GFSN-VITVLKGKIEEIE------ 184 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la----~-~g~~~V--~~vD~s~-~~~~a~~~~~~~-~~~~-~i~~~~~d~~~~~------ 184 (405)
.++.+|||||||+|.++..++ . .+...| +|+|+|+ |++.|++++... ++++ ++.+..++++++.
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 466799999999997664332 2 233444 9999999 999999998754 3422 2345566776554
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+++++||+|++..+ +++..++..++.++.++|||||+++..
T Consensus 131 ~~~~~fD~V~~~~~---l~~~~d~~~~l~~~~r~LkpgG~l~i~ 171 (292)
T 2aot_A 131 KELQKWDFIHMIQM---LYYVKDIPATLKFFHSLLGTNAKMLII 171 (292)
T ss_dssp TCCCCEEEEEEESC---GGGCSCHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCCCceeEEEEeee---eeecCCHHHHHHHHHHHcCCCcEEEEE
Confidence 34689999999655 444467889999999999999998853
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-13 Score=126.79 Aligned_cols=106 Identities=24% Similarity=0.324 Sum_probs=90.0
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (405)
.+.......++.+|||+|||+|.++..+++. + ..+|+++|+++ +++.|++++..++++++++++.+|+.+. ++.++
T Consensus 84 ~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~ 162 (255)
T 3mb5_A 84 LIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IEEEN 162 (255)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CCCCS
T ss_pred HHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cCCCC
Confidence 3444456778999999999999999999996 4 56999999999 9999999999999988899999999876 55578
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
||+|++++. ....++..+.++|+|||.++.
T Consensus 163 ~D~v~~~~~--------~~~~~l~~~~~~L~~gG~l~~ 192 (255)
T 3mb5_A 163 VDHVILDLP--------QPERVVEHAAKALKPGGFFVA 192 (255)
T ss_dssp EEEEEECSS--------CGGGGHHHHHHHEEEEEEEEE
T ss_pred cCEEEECCC--------CHHHHHHHHHHHcCCCCEEEE
Confidence 999998542 334678888899999999885
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=124.19 Aligned_cols=103 Identities=16% Similarity=0.209 Sum_probs=86.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CC---CCceeE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LP---VTKVDI 192 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~---~~~~D~ 192 (405)
.++.+|||||||+|..+..+++. + ..+|+++|+++ +++.|++++...++.++++++.+|+.+.. ++ .++||+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 46789999999999999999995 2 45999999999 99999999999999888999999997642 11 157999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
|++... ......++..+.++|+|||+++...
T Consensus 137 v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~ 167 (223)
T 3duw_A 137 IFIDAD------KQNNPAYFEWALKLSRPGTVIIGDN 167 (223)
T ss_dssp EEECSC------GGGHHHHHHHHHHTCCTTCEEEEES
T ss_pred EEEcCC------cHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 998643 2455788899999999999988654
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-14 Score=129.34 Aligned_cols=122 Identities=19% Similarity=0.018 Sum_probs=74.4
Q ss_pred CHHhHHHHHHHHHhccCC-CCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcc
Q 015534 103 DVVRTKSYQNVIYQNKFL-FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK 179 (405)
Q Consensus 103 d~~r~~~~~~~i~~~~~~-~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d 179 (405)
.+...+.+...+...... .++.+|||+|||+|.++..+++.+ ..+|+|+|+|+ +++.|++++..+++ +++++++|
T Consensus 10 p~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d 87 (215)
T 4dzr_A 10 PRPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAAD 87 (215)
T ss_dssp CCHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHH
T ss_pred CCccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcc
Confidence 344455555555544433 678899999999999999999974 34999999999 99999999988876 68999999
Q ss_pred cccccCCC-----CceeEEEEccccccccC-----------------------hhhHHHHHHHHHhcccCCcE-EEe
Q 015534 180 IEEIELPV-----TKVDIIISEWMGYFLLF-----------------------ENMLNTVLYARDKWLVDDGI-VLP 227 (405)
Q Consensus 180 ~~~~~~~~-----~~~D~Iv~~~~~~~l~~-----------------------~~~~~~~l~~~~~~LkpgG~-lip 227 (405)
+.+ .++. ++||+|++++..+.... ......++..+.++|||||+ ++.
T Consensus 88 ~~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 163 (215)
T 4dzr_A 88 GIE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFL 163 (215)
T ss_dssp HHH-HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEE
T ss_pred hHh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 987 3333 79999999754211100 00126778888999999999 553
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3e-13 Score=125.98 Aligned_cols=123 Identities=19% Similarity=0.184 Sum_probs=95.0
Q ss_pred CHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccc
Q 015534 103 DVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI 180 (405)
Q Consensus 103 d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~ 180 (405)
.+..++.+...+..... .++.+|||+|||+|.++..+++ .+..+|+|+|+|+ +++.|++++..++++ +++++++|+
T Consensus 91 pr~~te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~ 168 (276)
T 2b3t_A 91 PRPDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDW 168 (276)
T ss_dssp CCTTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCST
T ss_pred cCchHHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcch
Confidence 34445556666655443 5678999999999999999997 5566999999999 999999999999885 699999999
Q ss_pred ccccCCCCceeEEEEcccccc----------ccCh------------hhHHHHHHHHHhcccCCcEEEec
Q 015534 181 EEIELPVTKVDIIISEWMGYF----------LLFE------------NMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 181 ~~~~~~~~~~D~Iv~~~~~~~----------l~~~------------~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.+. ++.++||+|++++.... +.++ .....++..+.++|+|||+++..
T Consensus 169 ~~~-~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~ 237 (276)
T 2b3t_A 169 FSA-LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE 237 (276)
T ss_dssp TGG-GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred hhh-cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 875 33478999999853211 0011 34578889999999999998864
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-13 Score=123.81 Aligned_cols=101 Identities=19% Similarity=0.236 Sum_probs=83.7
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc----ccCCCCcee
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE----IELPVTKVD 191 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~~~D 191 (405)
....++.+|||+|||+|.++..+++. |..+|+|+|+|+ +++.|++++..+ ++++++.+|+.+ .+++ ++||
T Consensus 70 ~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~-~~~D 145 (230)
T 1fbn_A 70 MPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIV-EKVD 145 (230)
T ss_dssp CCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTS-CCEE
T ss_pred cCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcccccccC-ccEE
Confidence 44567889999999999999999995 657999999999 999999987654 569999999988 6665 7899
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|++.. ........++..+.++|||||.++.
T Consensus 146 ~v~~~~-----~~~~~~~~~l~~~~~~LkpgG~l~i 176 (230)
T 1fbn_A 146 VIYEDV-----AQPNQAEILIKNAKWFLKKGGYGMI 176 (230)
T ss_dssp EEEECC-----CSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEec-----CChhHHHHHHHHHHHhCCCCcEEEE
Confidence 999542 2233456778999999999999885
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.6e-13 Score=126.74 Aligned_cols=118 Identities=18% Similarity=0.285 Sum_probs=88.0
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEec-hH-HHHHHHHHH-----HHcCCC----CcEEE
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVEC-SQ-MANMAKQIV-----EANGFS----NVITV 175 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~-s~-~~~~a~~~~-----~~~~~~----~~i~~ 175 (405)
...+.+.+.......++.+|||||||+|.+++.+++.|+.+|+|+|+ |+ +++.|++++ ..+++. +++++
T Consensus 64 ~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~ 143 (281)
T 3bzb_A 64 ARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKV 143 (281)
T ss_dssp HHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEE
T ss_pred HHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEE
Confidence 44555666655555688899999999999999999988779999999 89 999999999 555553 46888
Q ss_pred EEccccccc--C----CCCceeEEEEccccccccChhhHHHHHHHHHhccc---C--CcEEEe
Q 015534 176 LKGKIEEIE--L----PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLV---D--DGIVLP 227 (405)
Q Consensus 176 ~~~d~~~~~--~----~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lk---p--gG~lip 227 (405)
+..+..+.. + +.++||+|++..+ +.+......++..+.++|+ | ||+++.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~fD~Ii~~dv---l~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v 203 (281)
T 3bzb_A 144 VPYRWGDSPDSLQRCTGLQRFQVVLLADL---LSFHQAHDALLRSVKMLLALPANDPTAVALV 203 (281)
T ss_dssp EECCTTSCTHHHHHHHSCSSBSEEEEESC---CSCGGGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred EEecCCCccHHHHhhccCCCCCEEEEeCc---ccChHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence 866654321 1 3478999998433 4455778899999999999 9 997653
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.5e-13 Score=126.02 Aligned_cols=113 Identities=16% Similarity=0.130 Sum_probs=89.6
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CC-CeEEEEechH-------HHHHHHHHHHHcCCCCcEEEEEcc---c
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQ-------MANMAKQIVEANGFSNVITVLKGK---I 180 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~-~~V~~vD~s~-------~~~~a~~~~~~~~~~~~i~~~~~d---~ 180 (405)
.+.......++.+|||||||+|.++..+++. |. .+|+|+|+|+ +++.|++++...++.++++++.+| .
T Consensus 34 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 113 (275)
T 3bkx_A 34 AIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSD 113 (275)
T ss_dssp HHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTT
T ss_pred HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhh
Confidence 3444455678899999999999999999996 43 6999999986 799999999988887789999998 4
Q ss_pred ccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 181 EEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 181 ~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
..++++.++||+|++..+.+++ .....++..+.++++|||+++..
T Consensus 114 ~~~~~~~~~fD~v~~~~~l~~~---~~~~~~~~~~~~l~~~gG~l~~~ 158 (275)
T 3bkx_A 114 DLGPIADQHFDRVVLAHSLWYF---ASANALALLFKNMAAVCDHVDVA 158 (275)
T ss_dssp CCGGGTTCCCSEEEEESCGGGS---SCHHHHHHHHHHHTTTCSEEEEE
T ss_pred ccCCCCCCCEEEEEEccchhhC---CCHHHHHHHHHHHhCCCCEEEEE
Confidence 4455566899999997654444 34456777777888889998854
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=9.8e-14 Score=130.05 Aligned_cols=108 Identities=15% Similarity=0.153 Sum_probs=80.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc-----------------CCC------------
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-----------------GFS------------ 170 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-----------------~~~------------ 170 (405)
.++.+|||||||+|.++..++..+..+|+|+|+|+ |++.|++++... +..
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 47789999999999976656554455999999999 999998865421 100
Q ss_pred CcEEEEEccccc-ccC-----CCCceeEEEEccccccccC-hhhHHHHHHHHHhcccCCcEEEec
Q 015534 171 NVITVLKGKIEE-IEL-----PVTKVDIIISEWMGYFLLF-ENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 171 ~~i~~~~~d~~~-~~~-----~~~~~D~Iv~~~~~~~l~~-~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
..++++.+|+.+ +++ +.++||+|++..+.+++.. ...+..++..+.++|||||+++..
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~ 214 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI 214 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 126788889987 443 3467999999765443322 357889999999999999999864
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.2e-14 Score=121.58 Aligned_cols=96 Identities=22% Similarity=0.273 Sum_probs=81.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
..++.+|||+|||+|.++..+++.+. +|+|+|+++ +++.|+++ . ++++++.+| .+++.++||+|++..+
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~-~~v~~~~~d---~~~~~~~~D~v~~~~~ 84 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK-----F-DSVITLSDP---KEIPDNSVDFILFANS 84 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH-----C-TTSEEESSG---GGSCTTCEEEEEEESC
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh-----C-CCcEEEeCC---CCCCCCceEEEEEccc
Confidence 46778999999999999999999865 999999999 99999987 2 468999999 5566689999999655
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.+ +..+...++..+.++|||||+++..
T Consensus 85 l~---~~~~~~~~l~~~~~~L~pgG~l~~~ 111 (170)
T 3i9f_A 85 FH---DMDDKQHVISEVKRILKDDGRVIII 111 (170)
T ss_dssp ST---TCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred hh---cccCHHHHHHHHHHhcCCCCEEEEE
Confidence 33 3356788999999999999999854
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.47 E-value=5.2e-14 Score=120.82 Aligned_cols=99 Identities=17% Similarity=0.096 Sum_probs=79.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CC--CCceeEEEEc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LP--VTKVDIIISE 196 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~--~~~~D~Iv~~ 196 (405)
++.+|||+|||+|.++..+++.|. +|+|+|+|+ +++.|++++..+++ +++++++|+.+.. .+ .++||+|+++
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~D~i~~~ 117 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhccCCceEEEEEC
Confidence 678999999999999999999877 599999999 99999999999887 5999999998742 11 2479999998
Q ss_pred cccccccChhhHHHHHHHHH--hcccCCcEEEec
Q 015534 197 WMGYFLLFENMLNTVLYARD--KWLVDDGIVLPD 228 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~--~~LkpgG~lip~ 228 (405)
+..+ ...+.++..+. ++|+|||+++..
T Consensus 118 ~~~~-----~~~~~~~~~~~~~~~L~~gG~~~~~ 146 (171)
T 1ws6_A 118 PPYA-----MDLAALFGELLASGLVEAGGLYVLQ 146 (171)
T ss_dssp CCTT-----SCTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred CCCc-----hhHHHHHHHHHhhcccCCCcEEEEE
Confidence 6422 22234445555 999999998853
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=128.22 Aligned_cols=123 Identities=24% Similarity=0.261 Sum_probs=93.9
Q ss_pred cCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccc
Q 015534 102 KDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI 180 (405)
Q Consensus 102 ~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~ 180 (405)
-.+..++.+.+.+.......++.+|||+|||+|.+++.+++.+..+|+|+|+|+ +++.|++++..+++.++++++++|+
T Consensus 103 ipr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~ 182 (284)
T 1nv8_A 103 VPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEF 182 (284)
T ss_dssp CCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESST
T ss_pred ecChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcc
Confidence 344555556655554333336679999999999999999987556999999999 9999999999999987899999999
Q ss_pred ccccCCCCce---eEEEEcccccccc---------ChhhH--------HHHHHHHH-hcccCCcEEEe
Q 015534 181 EEIELPVTKV---DIIISEWMGYFLL---------FENML--------NTVLYARD-KWLVDDGIVLP 227 (405)
Q Consensus 181 ~~~~~~~~~~---D~Iv~~~~~~~l~---------~~~~~--------~~~l~~~~-~~LkpgG~lip 227 (405)
.+. ++ ++| |+|++++. |... +++.. ..++..+. +.|+|||+++.
T Consensus 183 ~~~-~~-~~f~~~D~IvsnPP-yi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~ 247 (284)
T 1nv8_A 183 LEP-FK-EKFASIEMILSNPP-YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM 247 (284)
T ss_dssp TGG-GG-GGTTTCCEEEECCC-CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred hhh-cc-cccCCCCEEEEcCC-CCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence 874 33 578 99999853 2211 22211 26788888 99999999885
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.7e-14 Score=129.61 Aligned_cols=103 Identities=17% Similarity=0.129 Sum_probs=87.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC------CCcee
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP------VTKVD 191 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~------~~~~D 191 (405)
.++.+|||||||+|..++.+++. + ..+|+++|+++ +++.|++++...++.++++++.+|+.+.... .++||
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 45679999999999999999994 2 46999999999 9999999999999988899999999775321 37899
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+|++... ......++..+.++|+|||+++...
T Consensus 139 ~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~ 170 (242)
T 3r3h_A 139 FIFIDAD------KTNYLNYYELALKLVTPKGLIAIDN 170 (242)
T ss_dssp EEEEESC------GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEEcCC------hHHhHHHHHHHHHhcCCCeEEEEEC
Confidence 9998542 2456678899999999999998754
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.9e-14 Score=130.59 Aligned_cols=111 Identities=15% Similarity=0.115 Sum_probs=87.8
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCC----------------------------
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF---------------------------- 169 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~---------------------------- 169 (405)
...++.+|||||||+|.++..+++.|..+|+|+|+|+ |++.|++++...+.
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 4467789999999999999999887767999999999 99999988765431
Q ss_pred CCcE-EEEEcccccccC-CC---CceeEEEEcccccccc-ChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 170 SNVI-TVLKGKIEEIEL-PV---TKVDIIISEWMGYFLL-FENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 170 ~~~i-~~~~~d~~~~~~-~~---~~~D~Iv~~~~~~~l~-~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
..++ +++.+|+.+... +. ++||+|++..+.+++. +...+..++..+.++|||||+++...
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 198 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVD 198 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Confidence 0137 999999988643 44 7899999965433221 44577899999999999999988643
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-13 Score=124.48 Aligned_cols=103 Identities=19% Similarity=0.218 Sum_probs=86.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCC----Ccee
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPV----TKVD 191 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~----~~~D 191 (405)
.++.+|||||||+|..+..+++. + ..+|+++|+++ +++.|++++...++.++++++++|+.+.. +.. ++||
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 46789999999999999999985 3 56999999999 99999999999999888999999996652 111 6899
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+|++... ......++..+.++|+|||+++...
T Consensus 143 ~v~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~ 174 (225)
T 3tr6_A 143 LIYIDAD------KANTDLYYEESLKLLREGGLIAVDN 174 (225)
T ss_dssp EEEECSC------GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEECCC------HHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 9997542 2456778899999999999998644
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.2e-13 Score=128.42 Aligned_cols=105 Identities=23% Similarity=0.156 Sum_probs=85.2
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcCC--CeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~--~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (405)
+.......++.+|||||||+|.++..+++.+. .+|+|+|+|+ +++.|++++..+++++ ++++.+|+.+...+.++|
T Consensus 67 l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~-v~~~~~d~~~~~~~~~~f 145 (317)
T 1dl5_A 67 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYYGVPEFSPY 145 (317)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCCGGGCCE
T ss_pred HHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-eEEEECChhhccccCCCe
Confidence 33345567889999999999999999999643 4699999999 9999999999999865 999999998865444789
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
|+|++..+...+. ..+.++|||||+++..
T Consensus 146 D~Iv~~~~~~~~~---------~~~~~~LkpgG~lvi~ 174 (317)
T 1dl5_A 146 DVIFVTVGVDEVP---------ETWFTQLKEGGRVIVP 174 (317)
T ss_dssp EEEEECSBBSCCC---------HHHHHHEEEEEEEEEE
T ss_pred EEEEEcCCHHHHH---------HHHHHhcCCCcEEEEE
Confidence 9999976533321 4567899999998864
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.46 E-value=5.6e-13 Score=130.77 Aligned_cols=114 Identities=19% Similarity=0.216 Sum_probs=88.6
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHH-------HHHHHHcCCC-CcEEEEEcccc
Q 015534 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMA-------KQIVEANGFS-NVITVLKGKIE 181 (405)
Q Consensus 112 ~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a-------~~~~~~~~~~-~~i~~~~~d~~ 181 (405)
..+.......++.+|||||||+|.++..+++ .|..+|+|+|+++ +++.| ++++...|+. .+++++.+|..
T Consensus 232 ~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~ 311 (433)
T 1u2z_A 232 SDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSF 311 (433)
T ss_dssp HHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCS
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcc
Confidence 3344445667889999999999999999999 5777999999999 99999 8888888853 57999997543
Q ss_pred cc--cC--CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 182 EI--EL--PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 182 ~~--~~--~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
.. .+ ..++||+|+++.. +. ...+..++..+.+.|||||+++...
T Consensus 312 ~~~~~~~~~~~~FDvIvvn~~---l~-~~d~~~~L~el~r~LKpGG~lVi~d 359 (433)
T 1u2z_A 312 VDNNRVAELIPQCDVILVNNF---LF-DEDLNKKVEKILQTAKVGCKIISLK 359 (433)
T ss_dssp TTCHHHHHHGGGCSEEEECCT---TC-CHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred ccccccccccCCCCEEEEeCc---cc-cccHHHHHHHHHHhCCCCeEEEEee
Confidence 21 11 1378999998532 22 2566778899999999999988653
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.4e-13 Score=125.43 Aligned_cols=97 Identities=25% Similarity=0.353 Sum_probs=80.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (405)
++.+|||||||+|.++..+++.|. +|+|+|+|+ |++.|+++.. . .++.+|+.+++++.++||+|++.....
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~-----~--~~~~~d~~~~~~~~~~fD~v~~~~~~~ 125 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV-----K--NVVEAKAEDLPFPSGAFEAVLALGDVL 125 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC-----S--CEEECCTTSCCSCTTCEEEEEECSSHH
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcC-----C--CEEECcHHHCCCCCCCEEEEEEcchhh
Confidence 778999999999999999999865 999999999 9999988753 1 288999999888778999999854222
Q ss_pred cccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 201 FLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
++. ..+..++..+.++|||||.++..
T Consensus 126 ~~~--~~~~~~l~~~~~~LkpgG~l~~~ 151 (260)
T 2avn_A 126 SYV--ENKDKAFSEIRRVLVPDGLLIAT 151 (260)
T ss_dssp HHC--SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred hcc--ccHHHHHHHHHHHcCCCeEEEEE
Confidence 221 34788999999999999999854
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-13 Score=126.65 Aligned_cols=115 Identities=10% Similarity=0.022 Sum_probs=85.9
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc---CCCeEEEEechH-HHHHHHHHHHHc---CCCCc-------------
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA---GAAHVYAVECSQ-MANMAKQIVEAN---GFSNV------------- 172 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~---g~~~V~~vD~s~-~~~~a~~~~~~~---~~~~~------------- 172 (405)
.+.......++.+|||+|||+|.++..+++. +..+|+|+|+|+ +++.|++++..+ ++.++
T Consensus 42 ~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (250)
T 1o9g_A 42 RALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGK 121 (250)
T ss_dssp HHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhccc
Confidence 3333333346679999999999999999886 245999999999 999999988766 44333
Q ss_pred ------------EE-------------EEEcccccccC-----CCCceeEEEEccccccccC------hhhHHHHHHHHH
Q 015534 173 ------------IT-------------VLKGKIEEIEL-----PVTKVDIIISEWMGYFLLF------ENMLNTVLYARD 216 (405)
Q Consensus 173 ------------i~-------------~~~~d~~~~~~-----~~~~~D~Iv~~~~~~~l~~------~~~~~~~l~~~~ 216 (405)
++ ++++|+.+... ...+||+|++++....... ......++..+.
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~ 201 (250)
T 1o9g_A 122 PSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLA 201 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHH
Confidence 66 99999987532 3348999999864222211 245678899999
Q ss_pred hcccCCcEEEe
Q 015534 217 KWLVDDGIVLP 227 (405)
Q Consensus 217 ~~LkpgG~lip 227 (405)
++|+|||+++.
T Consensus 202 ~~LkpgG~l~~ 212 (250)
T 1o9g_A 202 SALPAHAVIAV 212 (250)
T ss_dssp HHSCTTCEEEE
T ss_pred HhcCCCcEEEE
Confidence 99999999885
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=5e-13 Score=121.15 Aligned_cols=102 Identities=18% Similarity=0.193 Sum_probs=83.0
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc---cCCCCcee
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI---ELPVTKVD 191 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~D 191 (405)
....++.+|||+|||+|.++..+++. +..+|+|+|+|+ +++.+.+++..+ .+++++.+|+.+. +...++||
T Consensus 73 ~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~~D 149 (233)
T 2ipx_A 73 IHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRMLIAMVD 149 (233)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGGCCCEE
T ss_pred ecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhcccCCcEE
Confidence 44567889999999999999999985 346999999999 999888888776 4699999999873 33457899
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|+++.. .......++..+.++|||||+++.
T Consensus 150 ~V~~~~~-----~~~~~~~~~~~~~~~LkpgG~l~i 180 (233)
T 2ipx_A 150 VIFADVA-----QPDQTRIVALNAHTFLRNGGHFVI 180 (233)
T ss_dssp EEEECCC-----CTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEcCC-----CccHHHHHHHHHHHHcCCCeEEEE
Confidence 9999653 223445667889999999999886
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.8e-13 Score=132.18 Aligned_cols=108 Identities=17% Similarity=0.154 Sum_probs=88.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCC-cEEEEEcccccccC----CCCceeEEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKIEEIEL----PVTKVDIII 194 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~----~~~~~D~Iv 194 (405)
.++.+|||+|||+|.+++.+++.|+++|+|+|+|+ +++.|++++..+++.+ +++++++|+.+... ...+||+|+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 57789999999999999999998888999999999 9999999999999975 79999999977421 135899999
Q ss_pred Ecccccc-----c-cChhhHHHHHHHHHhcccCCcEEEec
Q 015534 195 SEWMGYF-----L-LFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 195 ~~~~~~~-----l-~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+++..+. . ........++..+.++|+|||+++.+
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~ 330 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAS 330 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 9864321 1 11234456778888999999998854
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.5e-13 Score=123.12 Aligned_cols=103 Identities=18% Similarity=0.251 Sum_probs=86.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc-cCC--CCceeEEEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELP--VTKVDIIIS 195 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~--~~~~D~Iv~ 195 (405)
.++.+|||||||+|.++..+++. +..+|+++|+++ +++.|++++...++.++++++.+|+.+. +.. .++||+|++
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 46789999999999999999995 356999999999 9999999999999877899999999874 211 378999998
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
... . .....++..+.++|+|||+++...
T Consensus 133 ~~~---~---~~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 133 DAA---K---GQYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EGG---G---SCHHHHHHHHGGGEEEEEEEEEET
T ss_pred CCC---H---HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 543 1 356788999999999999998754
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.2e-13 Score=117.33 Aligned_cols=100 Identities=23% Similarity=0.272 Sum_probs=83.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc-c
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE-W 197 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~-~ 197 (405)
..++.+|||||||+|.++..+++.+. +|+++|+++ +++.|+++.. +++++.+|+.+++++.++||+|++. .
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~~------~~~~~~~d~~~~~~~~~~~D~i~~~~~ 116 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDFP------EARWVVGDLSVDQISETDFDLIVSAGN 116 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCT------TSEEEECCTTTSCCCCCCEEEEEECCC
T ss_pred ccCCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhCC------CCcEEEcccccCCCCCCceeEEEECCc
Confidence 35788999999999999999999865 999999999 9999988652 3789999999887777899999996 3
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+.+++ .......++..+.++|+|||.++.
T Consensus 117 ~~~~~-~~~~~~~~l~~~~~~l~~~G~l~~ 145 (195)
T 3cgg_A 117 VMGFL-AEDGREPALANIHRALGADGRAVI 145 (195)
T ss_dssp CGGGS-CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred HHhhc-ChHHHHHHHHHHHHHhCCCCEEEE
Confidence 33322 345668899999999999999885
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.5e-13 Score=128.74 Aligned_cols=118 Identities=20% Similarity=0.140 Sum_probs=95.2
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC--CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (405)
.+..++.......++.+|||+|||+|.+++.++..+ ..+|+|+|+++ +++.|++++...++. +++++++|+.+++.
T Consensus 190 ~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~~ 268 (354)
T 3tma_A 190 VLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLPR 268 (354)
T ss_dssp HHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGGG
T ss_pred HHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCcc
Confidence 455555555667788899999999999999999953 46999999999 999999999999987 79999999999887
Q ss_pred CCCceeEEEEccccccccC-----hhhHHHHHHHHHhcccCCcEEEe
Q 015534 186 PVTKVDIIISEWMGYFLLF-----ENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~-----~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+.+.||+|++++....... ......++..+.++|+|||.++.
T Consensus 269 ~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i 315 (354)
T 3tma_A 269 FFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVAL 315 (354)
T ss_dssp TCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEE
T ss_pred ccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 6677999999864211111 12236788899999999999875
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.3e-13 Score=121.34 Aligned_cols=102 Identities=18% Similarity=0.256 Sum_probs=85.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc-cCCCCceeEEEEc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDIIISE 196 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~Iv~~ 196 (405)
.++.+|||||||+|..+..+++. + ..+|+++|+++ +++.|++++...++.++++++.+|+.+. +...+ ||+|++.
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~ 133 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMD 133 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence 35679999999999999999985 3 46999999999 9999999999988877899999999775 33336 9999985
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
.. ......++..+.++|+|||+++...
T Consensus 134 ~~------~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 134 CD------VFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp TT------TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred CC------hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 31 2456788999999999999998754
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=4.2e-13 Score=121.28 Aligned_cols=103 Identities=21% Similarity=0.211 Sum_probs=82.0
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCcee
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (405)
.+.......++.+|||||||+|.++..+++.+ .+|+|+|+++ +++.|++++...+ +++++.+|+.+.....++||
T Consensus 61 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~~~~~~~fD 136 (231)
T 1vbf_A 61 FMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGYEEEKPYD 136 (231)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCCGGGCCEE
T ss_pred HHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCcccccccCCCcc
Confidence 33334456788899999999999999999986 6999999999 9999999987765 59999999987333347899
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+|++..+.+.+. ..+.++|+|||+++..
T Consensus 137 ~v~~~~~~~~~~---------~~~~~~L~pgG~l~~~ 164 (231)
T 1vbf_A 137 RVVVWATAPTLL---------CKPYEQLKEGGIMILP 164 (231)
T ss_dssp EEEESSBBSSCC---------HHHHHTEEEEEEEEEE
T ss_pred EEEECCcHHHHH---------HHHHHHcCCCcEEEEE
Confidence 999965433221 3567899999998754
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-13 Score=124.08 Aligned_cols=100 Identities=20% Similarity=0.258 Sum_probs=81.1
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc---cCC-CCceeE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI---ELP-VTKVDI 192 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~-~~~~D~ 192 (405)
....++.+|||||||+|.++..+++.|. +|+|+|+|+ +++.|+++ .++.++.+|+.++ +.. ..+||+
T Consensus 48 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~fD~ 119 (227)
T 3e8s_A 48 ILGRQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKVPVGKDYDL 119 (227)
T ss_dssp HHHTCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCSCCCCCEEE
T ss_pred hhcCCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh-------cccccchhhHHhhcccccccCCCccE
Confidence 3345678999999999999999999866 999999999 99999886 2367888898887 333 356999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
|++..+.+ ..++..++..+.++|||||+++...
T Consensus 120 v~~~~~l~----~~~~~~~l~~~~~~L~pgG~l~~~~ 152 (227)
T 3e8s_A 120 ICANFALL----HQDIIELLSAMRTLLVPGGALVIQT 152 (227)
T ss_dssp EEEESCCC----SSCCHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEECchhh----hhhHHHHHHHHHHHhCCCeEEEEEe
Confidence 99965433 3566789999999999999998643
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.44 E-value=5e-13 Score=122.74 Aligned_cols=106 Identities=26% Similarity=0.222 Sum_probs=88.4
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHc-CCCCcEEEEEcccccccCCCC
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEAN-GFSNVITVLKGKIEEIELPVT 188 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~~~~~ 188 (405)
.+.......++.+|||+|||+|.++..+++. | ..+|+++|+++ +++.|++++..+ + .++++++.+|+.+.+++.+
T Consensus 87 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~~~~~~ 165 (258)
T 2pwy_A 87 AMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEEAELEEA 165 (258)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGGCCCCTT
T ss_pred HHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhhcCCCCC
Confidence 3444456678899999999999999999996 5 56999999999 999999999887 7 3579999999998866667
Q ss_pred ceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+||+|++++ +....++..+.++|+|||.++.
T Consensus 166 ~~D~v~~~~--------~~~~~~l~~~~~~L~~gG~l~~ 196 (258)
T 2pwy_A 166 AYDGVALDL--------MEPWKVLEKAALALKPDRFLVA 196 (258)
T ss_dssp CEEEEEEES--------SCGGGGHHHHHHHEEEEEEEEE
T ss_pred CcCEEEECC--------cCHHHHHHHHHHhCCCCCEEEE
Confidence 899999853 2334678888899999999885
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.5e-13 Score=118.24 Aligned_cols=105 Identities=21% Similarity=0.190 Sum_probs=82.6
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcCC--CeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~--~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (405)
+.......++.+|||||||+|.++..+++.+. .+|+++|+++ +++.|++++...++. +++++.+|+.......++|
T Consensus 69 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~f 147 (215)
T 2yxe_A 69 MCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD-NVIVIVGDGTLGYEPLAPY 147 (215)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEESCGGGCCGGGCCE
T ss_pred HHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCCCCCCCe
Confidence 33334567889999999999999999999642 6999999999 999999999988875 4999999986543324789
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
|+|++......+ . ..+.++|||||+++..
T Consensus 148 D~v~~~~~~~~~---~------~~~~~~L~pgG~lv~~ 176 (215)
T 2yxe_A 148 DRIYTTAAGPKI---P------EPLIRQLKDGGKLLMP 176 (215)
T ss_dssp EEEEESSBBSSC---C------HHHHHTEEEEEEEEEE
T ss_pred eEEEECCchHHH---H------HHHHHHcCCCcEEEEE
Confidence 999996543322 1 3667999999998753
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-13 Score=125.09 Aligned_cols=90 Identities=18% Similarity=0.122 Sum_probs=76.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccc-ccccCC-CCceeEEEEcc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI-EEIELP-VTKVDIIISEW 197 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~-~~~~D~Iv~~~ 197 (405)
.++.+|||||||+|.++..+++.|. +|+|+|+|+ +++.|+++ . .+++++++|+ ..++++ +++||+|++..
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~-~~~~~~~~d~~~~~~~~~~~~fD~v~~~~ 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARAN-----A-PHADVYEWNGKGELPAGLGAPFGLIVSRR 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHH-----C-TTSEEEECCSCSSCCTTCCCCEEEEEEES
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHh-----C-CCceEEEcchhhccCCcCCCCEEEEEeCC
Confidence 5788999999999999999999865 999999999 99999987 1 3589999999 556666 68999999851
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
.+..++..+.++|||||+++
T Consensus 120 ---------~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 120 ---------GPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp ---------CCSGGGGGHHHHEEEEEEEE
T ss_pred ---------CHHHHHHHHHHHcCCCcEEE
Confidence 33466778889999999998
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.43 E-value=3e-13 Score=121.92 Aligned_cols=102 Identities=18% Similarity=0.178 Sum_probs=83.5
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc---cCCCCcee
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI---ELPVTKVD 191 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~D 191 (405)
..+.+|.+|||+|||+|.++..+|+. | ..+|+|+|+++ |++.+++++... .++..+.+|.... +...+.+|
T Consensus 73 l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~d~~~p~~~~~~~~~vD 149 (233)
T 4df3_A 73 LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILGDARFPEKYRHLVEGVD 149 (233)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---TTEEEEESCTTCGGGGTTTCCCEE
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEEeccCccccccccceEE
Confidence 56789999999999999999999993 4 56999999999 999999887654 3588888888654 34457899
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|++... +......++.++.++|||||.++.
T Consensus 150 vVf~d~~-----~~~~~~~~l~~~~r~LKpGG~lvI 180 (233)
T 4df3_A 150 GLYADVA-----QPEQAAIVVRNARFFLRDGGYMLM 180 (233)
T ss_dssp EEEECCC-----CTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEecc-----CChhHHHHHHHHHHhccCCCEEEE
Confidence 9998532 235667889999999999999874
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.3e-13 Score=122.37 Aligned_cols=102 Identities=13% Similarity=-0.027 Sum_probs=84.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC-----CceeEE
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV-----TKVDII 193 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-----~~~D~I 193 (405)
..++.+|||||||+|.++..+++.+. +|+|+|+|+ +++.|+++... .+++++++|+.++.... ..||+|
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~d~v 128 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTA----ANISYRLLDGLVPEQAAQIHSEIGDANI 128 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCC----TTEEEEECCTTCHHHHHHHHHHHCSCEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCcc----cCceEEECcccccccccccccccCccEE
Confidence 56778999999999999999999877 999999999 99999987621 36999999998865431 248999
Q ss_pred EEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
++..+.+++ .......++..+.++|||||+++.
T Consensus 129 ~~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i 161 (245)
T 3ggd_A 129 YMRTGFHHI-PVEKRELLGQSLRILLGKQGAMYL 161 (245)
T ss_dssp EEESSSTTS-CGGGHHHHHHHHHHHHTTTCEEEE
T ss_pred EEcchhhcC-CHHHHHHHHHHHHHHcCCCCEEEE
Confidence 997665444 334778999999999999999774
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.3e-13 Score=124.91 Aligned_cols=106 Identities=20% Similarity=0.190 Sum_probs=88.9
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (405)
+.......++.+|||+|||+|.++..+++. + ..+|+++|+++ +++.|++++..+++.++++++.+|+.+. ++.++|
T Consensus 104 i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~ 182 (277)
T 1o54_A 104 IAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKDV 182 (277)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCSE
T ss_pred HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCCcc
Confidence 334456678899999999999999999996 5 56999999999 9999999999998867899999999887 555789
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
|+|++++. ....++..+.++|+|||.++..
T Consensus 183 D~V~~~~~--------~~~~~l~~~~~~L~pgG~l~~~ 212 (277)
T 1o54_A 183 DALFLDVP--------DPWNYIDKCWEALKGGGRFATV 212 (277)
T ss_dssp EEEEECCS--------CGGGTHHHHHHHEEEEEEEEEE
T ss_pred CEEEECCc--------CHHHHHHHHHHHcCCCCEEEEE
Confidence 99998542 2346778888999999998853
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.7e-13 Score=136.53 Aligned_cols=105 Identities=15% Similarity=0.098 Sum_probs=86.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCC--CeEEEEechH-HHHHHHHHHHHc------CCCCcEEEEEcccccccCCCCce
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEAN------GFSNVITVLKGKIEEIELPVTKV 190 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~--~~V~~vD~s~-~~~~a~~~~~~~------~~~~~i~~~~~d~~~~~~~~~~~ 190 (405)
..++.+|||||||+|.++..+++.+. .+|+|+|+|+ |++.|++++... ++ .+++++++|+.+++++.++|
T Consensus 719 ~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiqGDa~dLp~~d~sF 797 (950)
T 3htx_A 719 ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYDGSILEFDSRLHDV 797 (950)
T ss_dssp HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEESCTTSCCTTSCSC
T ss_pred ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEECchHhCCcccCCe
Confidence 35788999999999999999999762 6999999999 999999877643 44 46999999999998877899
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+|++..+..++. ......++..+.++|||| .++.
T Consensus 798 DlVV~~eVLeHL~-dp~l~~~L~eI~RvLKPG-~LII 832 (950)
T 3htx_A 798 DIGTCLEVIEHME-EDQACEFGEKVLSLFHPK-LLIV 832 (950)
T ss_dssp CEEEEESCGGGSC-HHHHHHHHHHHHHTTCCS-EEEE
T ss_pred eEEEEeCchhhCC-hHHHHHHHHHHHHHcCCC-EEEE
Confidence 9999965544442 234457899999999999 5554
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.4e-13 Score=121.27 Aligned_cols=107 Identities=15% Similarity=0.158 Sum_probs=80.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHH------cCCCCcEEEEEccccc-cc--CCCCc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEA------NGFSNVITVLKGKIEE-IE--LPVTK 189 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~------~~~~~~i~~~~~d~~~-~~--~~~~~ 189 (405)
.++.+|||||||+|.++..+|+. +...|+|+|+|+ |++.|++++.. .++ .+++++.+|+.+ ++ ++.++
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~~~~~ 123 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFFYKGQ 123 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHCCTTC
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhCCCcC
Confidence 45679999999999999999985 456999999999 99999988764 345 469999999987 55 66689
Q ss_pred eeEEEEcccccccc--Chh---hHHHHHHHHHhcccCCcEEEec
Q 015534 190 VDIIISEWMGYFLL--FEN---MLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~--~~~---~~~~~l~~~~~~LkpgG~lip~ 228 (405)
||.|++........ +.. ..+.++..+.++|||||.++..
T Consensus 124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~ 167 (235)
T 3ckk_A 124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTI 167 (235)
T ss_dssp EEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence 99998743211110 000 0146899999999999998753
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.5e-13 Score=123.44 Aligned_cols=103 Identities=15% Similarity=0.154 Sum_probs=86.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--C-----CCCce
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L-----PVTKV 190 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~-----~~~~~ 190 (405)
.++.+|||||||+|..+..+++. + ..+|+++|+++ +++.|++++...++.++++++.+|+.+.. + +.++|
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 46679999999999999999995 3 46999999999 99999999999999888999999997652 2 13789
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
|+|++... ......++..+.++|+|||+++...
T Consensus 158 D~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 158 DFIFVDAD------KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp SEEEECSC------STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEEcCc------hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 99998532 2356788899999999999998654
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-12 Score=119.75 Aligned_cols=105 Identities=19% Similarity=0.193 Sum_probs=87.8
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (405)
+.......++.+|||+|||+|.++..+++. ..+|+++|+++ +++.|+++...+++.++++++.+|+.+..++.++||+
T Consensus 83 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 161 (248)
T 2yvl_A 83 IALKLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHA 161 (248)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSE
T ss_pred HHHhcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccE
Confidence 333455678899999999999999999998 56999999999 9999999999998877899999999886535578999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|++++. ....++..+.++|+|||.++.
T Consensus 162 v~~~~~--------~~~~~l~~~~~~L~~gG~l~~ 188 (248)
T 2yvl_A 162 AFVDVR--------EPWHYLEKVHKSLMEGAPVGF 188 (248)
T ss_dssp EEECSS--------CGGGGHHHHHHHBCTTCEEEE
T ss_pred EEECCc--------CHHHHHHHHHHHcCCCCEEEE
Confidence 998532 334567888899999999885
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.2e-13 Score=123.57 Aligned_cols=100 Identities=21% Similarity=0.265 Sum_probs=84.8
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
...++.+|||+|||+|.+++.+++. +..+|+|+|+++ +++.|+++++.+++. +++++.+|+.+++. .++||+|+++
T Consensus 116 ~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~d~~~~~~-~~~~D~Vi~d 193 (272)
T 3a27_A 116 ISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILADNRDVEL-KDVADRVIMG 193 (272)
T ss_dssp SCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEESCGGGCCC-TTCEEEEEEC
T ss_pred hcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEECChHHcCc-cCCceEEEEC
Confidence 3567889999999999999999996 466999999999 999999999999985 48899999998833 4789999997
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+.. ....++..+.+.|+|||+++.
T Consensus 194 ~p~-------~~~~~l~~~~~~LkpgG~l~~ 217 (272)
T 3a27_A 194 YVH-------KTHKFLDKTFEFLKDRGVIHY 217 (272)
T ss_dssp CCS-------SGGGGHHHHHHHEEEEEEEEE
T ss_pred Ccc-------cHHHHHHHHHHHcCCCCEEEE
Confidence 642 334567777899999999874
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-12 Score=120.57 Aligned_cols=104 Identities=14% Similarity=0.162 Sum_probs=83.2
Q ss_pred CCCEEEEEcCCC---cHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----------C
Q 015534 122 KDKVVLDVGAGT---GILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----------L 185 (405)
Q Consensus 122 ~~~~VLDiGcG~---G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~ 185 (405)
...+|||||||+ |.++..+++. +..+|+++|+|+ |++.|++++... ++++++.+|+.+.. +
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~---~~v~~~~~D~~~~~~~~~~~~~~~~~ 153 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD---PNTAVFTADVRDPEYILNHPDVRRMI 153 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC---TTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC---CCeEEEEeeCCCchhhhccchhhccC
Confidence 447999999999 9888777663 446999999999 999999988432 56999999997531 2
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+..+||+|++..+.+++..+ ....++..+.++|+|||.++...
T Consensus 154 d~~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~ 196 (274)
T 2qe6_A 154 DFSRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMTS 196 (274)
T ss_dssp CTTSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCCCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEEE
Confidence 33589999998766666443 57899999999999999998654
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-12 Score=117.83 Aligned_cols=102 Identities=21% Similarity=0.259 Sum_probs=81.6
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCcee
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVD 191 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D 191 (405)
....++.+|||+|||+|.++..+++. | ..+|+|+|+|+ +++.+++++..+ .+++++.+|+.+.. ...++||
T Consensus 69 ~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~D 145 (227)
T 1g8a_A 69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRALVPKVD 145 (227)
T ss_dssp CCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTTCCCEE
T ss_pred cCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhcccCCce
Confidence 33567889999999999999999985 4 36999999999 999999988765 46999999998742 1136899
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|+++.. .......++..+.++|||||.++.
T Consensus 146 ~v~~~~~-----~~~~~~~~l~~~~~~LkpgG~l~~ 176 (227)
T 1g8a_A 146 VIFEDVA-----QPTQAKILIDNAEVYLKRGGYGMI 176 (227)
T ss_dssp EEEECCC-----STTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEECCC-----CHhHHHHHHHHHHHhcCCCCEEEE
Confidence 9998653 223344558899999999999885
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.41 E-value=8.2e-13 Score=123.00 Aligned_cols=108 Identities=28% Similarity=0.357 Sum_probs=88.8
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHc-C-CCCcEEEEEcccccccCCC
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEAN-G-FSNVITVLKGKIEEIELPV 187 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~-~-~~~~i~~~~~d~~~~~~~~ 187 (405)
.+.......++.+|||+|||+|.++..+++. + ..+|+++|+++ +++.|++++..+ + +.++++++.+|+.+..++.
T Consensus 90 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~ 169 (280)
T 1i9g_A 90 QIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPD 169 (280)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCT
T ss_pred HHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCC
Confidence 3444455678899999999999999999984 3 56999999999 999999999887 5 4467999999999887766
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
++||+|+++.. ....++..+.++|+|||.++..
T Consensus 170 ~~~D~v~~~~~--------~~~~~l~~~~~~L~pgG~l~~~ 202 (280)
T 1i9g_A 170 GSVDRAVLDML--------APWEVLDAVSRLLVAGGVLMVY 202 (280)
T ss_dssp TCEEEEEEESS--------CGGGGHHHHHHHEEEEEEEEEE
T ss_pred CceeEEEECCc--------CHHHHHHHHHHhCCCCCEEEEE
Confidence 88999998532 3336788889999999998853
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=5.8e-13 Score=139.13 Aligned_cols=108 Identities=15% Similarity=0.158 Sum_probs=90.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCC-CcEEEEEcccccc-cCCCCceeEEEEcc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEI-ELPVTKVDIIISEW 197 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~-~~~~~~~D~Iv~~~ 197 (405)
.+|.+|||+|||+|.+++.+++.|+.+|+++|+|+ +++.|++++..|++. ++++++++|+.++ ....++||+|++++
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 36889999999999999999998888999999999 999999999999997 5899999999874 23347899999987
Q ss_pred cccc--------ccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 198 MGYF--------LLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 198 ~~~~--------l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
..+. .........++..+.++|+|||+++.+
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s 656 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFS 656 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 4321 122345677888999999999999854
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.40 E-value=5.3e-13 Score=124.23 Aligned_cols=106 Identities=15% Similarity=0.106 Sum_probs=85.2
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHc-CCCCcEEEEEcccccccCCCC
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEAN-GFSNVITVLKGKIEEIELPVT 188 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~~~~~ 188 (405)
.+.......++.+|||+|||+|.++..+++. +..+|+++|+++ +++.|++++..+ +. ++++++.+|+.+ .++.+
T Consensus 101 ~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~-~~~~~ 178 (275)
T 1yb2_A 101 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIAD-FISDQ 178 (275)
T ss_dssp -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTT-CCCSC
T ss_pred HHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhc-cCcCC
Confidence 3444456778899999999999999999986 356999999999 999999999888 75 469999999988 45557
Q ss_pred ceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+||+|++.+ +....++..+.++|||||+++..
T Consensus 179 ~fD~Vi~~~--------~~~~~~l~~~~~~LkpgG~l~i~ 210 (275)
T 1yb2_A 179 MYDAVIADI--------PDPWNHVQKIASMMKPGSVATFY 210 (275)
T ss_dssp CEEEEEECC--------SCGGGSHHHHHHTEEEEEEEEEE
T ss_pred CccEEEEcC--------cCHHHHHHHHHHHcCCCCEEEEE
Confidence 899999843 23357788889999999998854
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.2e-12 Score=122.11 Aligned_cols=106 Identities=17% Similarity=0.239 Sum_probs=88.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
.++.+|||||||+|.++..+++. +..+++++|++.+++.|++++...++.++++++.+|+.+.+++ ..||+|++..+.
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~v~~~~~l 242 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYG-NDYDLVLLPNFL 242 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCC-SCEEEEEEESCG
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCcEEEEcchh
Confidence 67789999999999999999985 4459999999999999999999988878899999999887666 459999996543
Q ss_pred ccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+.. .......++..+.++|+|||+++..
T Consensus 243 ~~~-~~~~~~~~l~~~~~~L~pgG~l~i~ 270 (335)
T 2r3s_A 243 HHF-DVATCEQLLRKIKTALAVEGKVIVF 270 (335)
T ss_dssp GGS-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccC-CHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 333 2345678999999999999988753
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-13 Score=123.24 Aligned_cols=106 Identities=18% Similarity=0.076 Sum_probs=79.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHH----HHcCCCCcEEEEEcccccccCCCCceeEE
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIV----EANGFSNVITVLKGKIEEIELPVTKVDII 193 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~----~~~~~~~~i~~~~~d~~~~~~~~~~~D~I 193 (405)
..++.+|||||||+|.++..+++.+ ..+|+|+|+|+ |++.+.+.+ ...+++ +++++++|+.+++++.+. |.|
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~-~v~~~~~d~~~l~~~~~~-d~v 102 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLP-NLLYLWATAERLPPLSGV-GEL 102 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCT-TEEEEECCSTTCCSCCCE-EEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCC-ceEEEecchhhCCCCCCC-CEE
Confidence 4578899999999999999999963 56999999999 999644333 234553 699999999998877566 887
Q ss_pred EEcccccccc--ChhhHHHHHHHHHhcccCCcEEEe
Q 015534 194 ISEWMGYFLL--FENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 194 v~~~~~~~l~--~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+.......+. +..+...++..+.++|||||+++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 138 (218)
T 3mq2_A 103 HVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLV 138 (218)
T ss_dssp EEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEE
T ss_pred EEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEE
Confidence 7432111110 112337889999999999999986
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.40 E-value=5.1e-13 Score=130.94 Aligned_cols=107 Identities=25% Similarity=0.257 Sum_probs=89.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----CCCceeEEEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----PVTKVDIIIS 195 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~D~Iv~ 195 (405)
.++.+|||+|||+|.+++.+++.|+++|+|+|+|+ +++.|++++..+++.++++++.+|+.++.. ..++||+|++
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 37889999999999999999998888999999999 999999999999987689999999987632 2468999999
Q ss_pred ccccccccCh-------hhHHHHHHHHHhcccCCcEEEec
Q 015534 196 EWMGYFLLFE-------NMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 196 ~~~~~~l~~~-------~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
++..+ .... .....++..+.++|+|||.++..
T Consensus 296 dpP~~-~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~ 334 (396)
T 2as0_A 296 DPPAF-VQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTC 334 (396)
T ss_dssp CCCCS-CSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCCCC-CCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 86422 1111 34567888889999999998754
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.40 E-value=6.1e-13 Score=122.18 Aligned_cols=106 Identities=18% Similarity=0.134 Sum_probs=77.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc---cCC---CCceeEE
Q 015534 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI---ELP---VTKVDII 193 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~---~~~~D~I 193 (405)
++.+|||+|||+|.++..+++. +..+|+|+|+|+ |++.|++++..+++.++++++++|+.+. .++ +++||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 5779999999999999888874 346999999999 9999999999999988899999998762 233 2589999
Q ss_pred EEccccccccCh------------hhHHHHHHHHHhcccCCcEEEe
Q 015534 194 ISEWMGYFLLFE------------NMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 194 v~~~~~~~l~~~------------~~~~~~l~~~~~~LkpgG~lip 227 (405)
++++..+....+ .....++..+.++|||||.+.+
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~ 190 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEF 190 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHH
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEE
Confidence 998642221100 0112456677899999998754
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.6e-13 Score=121.33 Aligned_cols=102 Identities=22% Similarity=0.292 Sum_probs=85.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc-c------------
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-E------------ 184 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~------------ 184 (405)
.++.+|||||||+|..+..+++. + ..+|+++|+++ +++.|++++...++.++++++.+|+.+. +
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 46789999999999999999995 3 46999999999 9999999999999877899999998763 1
Q ss_pred --CCC--CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 185 --LPV--TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 185 --~~~--~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
++. ++||+|++... ......++..+.++|+|||+++..
T Consensus 139 ~~f~~~~~~fD~I~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~ 180 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDAD------KENYPNYYPLILKLLKPGGLLIAD 180 (239)
T ss_dssp TTTCCSTTCEEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccCCCCCcCEEEEeCC------HHHHHHHHHHHHHHcCCCeEEEEE
Confidence 111 68999998532 245668889999999999999864
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-12 Score=125.55 Aligned_cols=105 Identities=18% Similarity=0.153 Sum_probs=87.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc--cCCCCceeEEEEc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--ELPVTKVDIIISE 196 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~Iv~~ 196 (405)
..+.+|||||||+|.++..+++. +..+|+++|+ + +++.|++++...++.++++++.+|+.+. +++ ++||+|++.
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~ 255 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMS 255 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEe
Confidence 45679999999999999999984 4569999999 8 9999999999888878899999999886 355 789999986
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.+.+.+ .......+++.+.+.|||||+++..
T Consensus 256 ~vlh~~-~~~~~~~~l~~~~~~L~pgG~l~i~ 286 (363)
T 3dp7_A 256 QFLDCF-SEEEVISILTRVAQSIGKDSKVYIM 286 (363)
T ss_dssp SCSTTS-CHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred chhhhC-CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 553332 2345568899999999999998753
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.7e-13 Score=130.08 Aligned_cols=108 Identities=20% Similarity=0.208 Sum_probs=89.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCC-CCcEEEEEcccccccC----CCCceeEEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF-SNVITVLKGKIEEIEL----PVTKVDIII 194 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~-~~~i~~~~~d~~~~~~----~~~~~D~Iv 194 (405)
.++.+|||+|||+|.+++.+++.|+.+|+|+|+|+ +++.|++++..+++ .++++++.+|+.++.. ..++||+|+
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 47789999999999999999998888999999999 99999999999998 6579999999987632 136899999
Q ss_pred Ecccccc------ccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 195 SEWMGYF------LLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 195 ~~~~~~~------l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+++..+. .........++..+.++|+|||+++.+
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 338 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTF 338 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 9864221 111245678888889999999998854
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-12 Score=119.54 Aligned_cols=103 Identities=17% Similarity=0.129 Sum_probs=86.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--C-----CCCce
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L-----PVTKV 190 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~-----~~~~~ 190 (405)
.++.+|||||||+|..+..+++. + ..+|+++|+++ +++.|++++...++.++++++.+|+.+.. + +.++|
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 46779999999999999999985 3 46999999999 99999999999999878999999997652 2 13789
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
|+|++... ......++..+.++|+|||+++...
T Consensus 149 D~I~~d~~------~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 149 DFGFVDAD------KPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CEEEECCc------hHHHHHHHHHHHHhcCCCeEEEEec
Confidence 99998532 2456788899999999999998654
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.6e-12 Score=123.80 Aligned_cols=112 Identities=10% Similarity=0.110 Sum_probs=91.9
Q ss_pred HHhccCCCC-CCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCC
Q 015534 114 IYQNKFLFK-DKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVT 188 (405)
Q Consensus 114 i~~~~~~~~-~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~ 188 (405)
+.......+ +.+|||||||+|.++..+++. +..+++++|+ + +++.|++++...++.++++++.+|+.+.+ .+ +
T Consensus 170 ~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~ 247 (352)
T 3mcz_A 170 VVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEG-G 247 (352)
T ss_dssp HHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTT-C
T ss_pred HHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCC-C
Confidence 333444555 789999999999999999984 4569999999 7 99999999999998888999999998876 44 6
Q ss_pred ceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.||+|++..+.+.+ .......+++.+.+.|+|||+++..
T Consensus 248 ~~D~v~~~~vlh~~-~~~~~~~~l~~~~~~L~pgG~l~i~ 286 (352)
T 3mcz_A 248 AADVVMLNDCLHYF-DAREAREVIGHAAGLVKPGGALLIL 286 (352)
T ss_dssp CEEEEEEESCGGGS-CHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CccEEEEecccccC-CHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 79999996654433 3345678999999999999998853
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=7.1e-13 Score=119.59 Aligned_cols=103 Identities=17% Similarity=0.119 Sum_probs=85.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCC----Ccee
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPV----TKVD 191 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~----~~~D 191 (405)
.++.+|||||||+|..+..+++. + ..+|+++|+++ +++.|++++..+++.++++++.+|+.+.. ++. ++||
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 46789999999999999999984 3 56999999999 99999999999998788999999987642 211 6899
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+|+++.. ......++..+.++|+|||+++...
T Consensus 148 ~v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 148 VAVVDAD------KENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp EEEECSC------STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEECCC------HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 9998642 2345678888999999999998644
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=5.6e-12 Score=121.83 Aligned_cols=112 Identities=15% Similarity=0.138 Sum_probs=90.8
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (405)
.+.......++.+|||||||+|.++..+++. +..+|+++|+ + +++.|++++...+++++++++.+|+.+.+++ .+
T Consensus 181 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~ 257 (359)
T 1x19_A 181 LLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP--EA 257 (359)
T ss_dssp HHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCC--CC
T ss_pred HHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCC--CC
Confidence 3443445567889999999999999999985 3459999999 9 9999999999999888899999999987665 34
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
|+|++..+.+.. .......+++.+.++|+|||+++..
T Consensus 258 D~v~~~~vlh~~-~d~~~~~~l~~~~~~L~pgG~l~i~ 294 (359)
T 1x19_A 258 DAVLFCRILYSA-NEQLSTIMCKKAFDAMRSGGRLLIL 294 (359)
T ss_dssp SEEEEESCGGGS-CHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred CEEEEechhccC-CHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 999996554333 2234788999999999999998753
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.39 E-value=8.2e-13 Score=122.92 Aligned_cols=111 Identities=15% Similarity=0.077 Sum_probs=88.3
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHH--cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----CCCcee
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAK--AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----PVTKVD 191 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~--~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~D 191 (405)
...++.+|||+|||+|..+..+++ .+..+|+|+|+++ +++.+++++..+++. +++++++|+.++.. ..++||
T Consensus 80 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~~fD 158 (274)
T 3ajd_A 80 NPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLLKNEIFFD 158 (274)
T ss_dssp CCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhhhccccCC
Confidence 356789999999999999999998 3447999999999 999999999999985 69999999988754 247899
Q ss_pred EEEEcccccccc--C-------------hhhHHHHHHHHHhcccCCcEEEecCc
Q 015534 192 IIISEWMGYFLL--F-------------ENMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 192 ~Iv~~~~~~~l~--~-------------~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
+|++++...... . ......++..+.++|||||+++.++.
T Consensus 159 ~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stc 212 (274)
T 3ajd_A 159 KILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTC 212 (274)
T ss_dssp EEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEES
T ss_pred EEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 999974322110 0 12346788999999999999986543
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=5.8e-12 Score=122.20 Aligned_cols=113 Identities=15% Similarity=0.155 Sum_probs=90.9
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc
Q 015534 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (405)
Q Consensus 112 ~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (405)
..+.......++.+|||||||+|.++..+++. +..+++++|+ + +++.|++++...++.++++++.+|+. .+++ ..
T Consensus 192 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p-~~ 268 (369)
T 3gwz_A 192 GQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIP-DG 268 (369)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCC-SS
T ss_pred HHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCC-CC
Confidence 33444445567789999999999999999985 4559999999 8 99999999999998889999999998 4455 38
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
||+|++..+.+.. .......+++.+.+.|+|||+++..
T Consensus 269 ~D~v~~~~vlh~~-~d~~~~~~L~~~~~~L~pgG~l~i~ 306 (369)
T 3gwz_A 269 ADVYLIKHVLHDW-DDDDVVRILRRIATAMKPDSRLLVI 306 (369)
T ss_dssp CSEEEEESCGGGS-CHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred ceEEEhhhhhccC-CHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 9999996654433 2233447999999999999998853
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-12 Score=124.32 Aligned_cols=112 Identities=13% Similarity=0.071 Sum_probs=88.2
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 194 (405)
....++.+|||+|||+|..+..+++. +..+|+|+|+++ +++.+++++..+++. +++++++|+.++....++||+|+
T Consensus 114 l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~~~~~~~fD~Il 192 (315)
T 1ixk_A 114 LDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGELNVEFDKIL 192 (315)
T ss_dssp HCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGGGCCCEEEEE
T ss_pred hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhhcccccccCCEEE
Confidence 34578899999999999999999984 346999999999 999999999999985 59999999998764347899999
Q ss_pred Ecccccc---ccChh----------------hHHHHHHHHHhcccCCcEEEecCc
Q 015534 195 SEWMGYF---LLFEN----------------MLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 195 ~~~~~~~---l~~~~----------------~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
++...+. +...+ ....++..+.++|||||+++.++.
T Consensus 193 ~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stc 247 (315)
T 1ixk_A 193 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC 247 (315)
T ss_dssp EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred EeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 9643111 11111 125788899999999999986543
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.38 E-value=8.1e-13 Score=127.00 Aligned_cols=111 Identities=20% Similarity=0.192 Sum_probs=88.2
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCC-CeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~-~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (405)
.+.......++.+|||+|||+|.++..+++.+. .+|+++|+|+ +++.|++++..+++. ++++.+|+.+.. .++|
T Consensus 187 ~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~~~--~~~f 262 (343)
T 2pjd_A 187 LLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFSEV--KGRF 262 (343)
T ss_dssp HHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTC--CSCE
T ss_pred HHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEccccccc--cCCe
Confidence 344334344567999999999999999999753 4999999999 999999999998875 577889987653 4799
Q ss_pred eEEEEcccccccc--ChhhHHHHHHHHHhcccCCcEEEe
Q 015534 191 DIIISEWMGYFLL--FENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 191 D~Iv~~~~~~~l~--~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+|+++++.+... +......++..+.++|||||.++.
T Consensus 263 D~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i 301 (343)
T 2pjd_A 263 DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRI 301 (343)
T ss_dssp EEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred eEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 9999987533211 234567899999999999999875
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.9e-12 Score=122.44 Aligned_cols=106 Identities=19% Similarity=0.055 Sum_probs=87.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
..++.+|||||||+|.++..+++ .+..+++++|+ + +++.|++++...++.++++++.+|+. .+.+ .+||+|++..
T Consensus 167 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p-~~~D~v~~~~ 243 (332)
T 3i53_A 167 WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLP-AGAGGYVLSA 243 (332)
T ss_dssp CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCC-CSCSEEEEES
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCC-CCCcEEEEeh
Confidence 34568999999999999999988 44569999999 8 99999999999998889999999997 3455 3899999966
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+.+.. ..+....+++.+.+.|+|||+++...
T Consensus 244 vlh~~-~~~~~~~~l~~~~~~L~pgG~l~i~e 274 (332)
T 3i53_A 244 VLHDW-DDLSAVAILRRCAEAAGSGGVVLVIE 274 (332)
T ss_dssp CGGGS-CHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred hhccC-CHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 54433 22345789999999999999988643
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=4.4e-12 Score=123.18 Aligned_cols=112 Identities=21% Similarity=0.175 Sum_probs=89.4
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCcee
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (405)
+.......++.+|||||||+|.++..+++.. ..+++++|+ + +++.|++++...++.++++++.+|+.+ .++ ..||
T Consensus 174 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D 250 (374)
T 1qzz_A 174 PADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLP-VTAD 250 (374)
T ss_dssp HHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-CCEE
T ss_pred HHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCC-CCCC
Confidence 3333445678899999999999999999853 459999999 9 999999999999988789999999976 344 4599
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+|++..+.+.+ .......++..+.++|+|||+++...
T Consensus 251 ~v~~~~vl~~~-~~~~~~~~l~~~~~~L~pgG~l~i~e 287 (374)
T 1qzz_A 251 VVLLSFVLLNW-SDEDALTILRGCVRALEPGGRLLVLD 287 (374)
T ss_dssp EEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeccccCC-CHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 99996654433 22333588999999999999988644
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-12 Score=118.04 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=85.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc----cCCC--Ccee
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI----ELPV--TKVD 191 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~--~~~D 191 (405)
.++.+|||||||+|..+..+++. + ..+|+++|+++ +++.|++++...++.++++++.+|+.+. +... ++||
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 35679999999999999999985 3 45999999999 9999999999999877899999998653 2222 6899
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+|++... ......++..+.++|+|||+++...
T Consensus 151 ~V~~d~~------~~~~~~~l~~~~~~LkpgG~lv~~~ 182 (232)
T 3cbg_A 151 LIFIDAD------KRNYPRYYEIGLNLLRRGGLMVIDN 182 (232)
T ss_dssp EEEECSC------GGGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred EEEECCC------HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 9998542 2456788899999999999998654
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.7e-12 Score=115.63 Aligned_cols=100 Identities=21% Similarity=0.197 Sum_probs=80.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-CC-CeEEEEechH-HHHHHHHHHHHcCC----CCcEEEEEcccccccCCCCceeE
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQ-MANMAKQIVEANGF----SNVITVLKGKIEEIELPVTKVDI 192 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~-g~-~~V~~vD~s~-~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~~D~ 192 (405)
..++.+|||||||+|.++..+++. |. .+|+++|+++ +++.|++++..+++ .++++++.+|+.......++||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 567889999999999999999985 43 5999999999 99999999988764 35699999999876544578999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
|++..... .++..+.++|||||+++..
T Consensus 155 i~~~~~~~---------~~~~~~~~~LkpgG~lv~~ 181 (226)
T 1i1n_A 155 IHVGAAAP---------VVPQALIDQLKPGGRLILP 181 (226)
T ss_dssp EEECSBBS---------SCCHHHHHTEEEEEEEEEE
T ss_pred EEECCchH---------HHHHHHHHhcCCCcEEEEE
Confidence 99865321 1235677999999998853
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-12 Score=124.71 Aligned_cols=102 Identities=20% Similarity=0.292 Sum_probs=79.7
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc-CC-CeEEEEechH-HHHHHHHHHHHcC----------CCCcEEEEEcccccc-
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQ-MANMAKQIVEANG----------FSNVITVLKGKIEEI- 183 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~-g~-~~V~~vD~s~-~~~~a~~~~~~~~----------~~~~i~~~~~d~~~~- 183 (405)
....++.+|||+|||+|.++..+++. |. .+|+++|+++ +++.|++++...+ +.++++++.+|+.+.
T Consensus 101 l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~ 180 (336)
T 2b25_A 101 MDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT 180 (336)
T ss_dssp HTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC
T ss_pred cCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcc
Confidence 45678899999999999999999995 54 7999999999 9999999988632 235799999999886
Q ss_pred -cCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 184 -ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 184 -~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.++.++||+|+++... ...++..+.++|+|||.++.
T Consensus 181 ~~~~~~~fD~V~~~~~~--------~~~~l~~~~~~LkpgG~lv~ 217 (336)
T 2b25_A 181 EDIKSLTFDAVALDMLN--------PHVTLPVFYPHLKHGGVCAV 217 (336)
T ss_dssp -------EEEEEECSSS--------TTTTHHHHGGGEEEEEEEEE
T ss_pred cccCCCCeeEEEECCCC--------HHHHHHHHHHhcCCCcEEEE
Confidence 3455689999986431 12367888999999999873
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.38 E-value=6.3e-12 Score=111.49 Aligned_cols=99 Identities=25% Similarity=0.205 Sum_probs=80.3
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
...++.+|||+|||+|.++..+++.|..+|+|+|+++ +++.|++++..+++ +++++++|+.+++ ++||+|++++
T Consensus 46 ~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~---~~~D~v~~~~ 120 (207)
T 1wy7_A 46 GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFN---SRVDIVIMNP 120 (207)
T ss_dssp TSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCC---CCCSEEEECC
T ss_pred CCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHcC---CCCCEEEEcC
Confidence 3457889999999999999999998877999999999 99999999988887 5999999999863 5899999987
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEE
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIV 225 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l 225 (405)
..+ .........++..+.++| ||.+
T Consensus 121 p~~-~~~~~~~~~~l~~~~~~l--~~~~ 145 (207)
T 1wy7_A 121 PFG-SQRKHADRPFLLKAFEIS--DVVY 145 (207)
T ss_dssp CCS-SSSTTTTHHHHHHHHHHC--SEEE
T ss_pred CCc-cccCCchHHHHHHHHHhc--CcEE
Confidence 533 222234456777777877 5543
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.38 E-value=2e-12 Score=118.32 Aligned_cols=107 Identities=21% Similarity=0.253 Sum_probs=82.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCC-CeEEEEechH-HHHHHHHHHHHc--------CCCCcEEEEEccccc-cc--CC
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEAN--------GFSNVITVLKGKIEE-IE--LP 186 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~-~~V~~vD~s~-~~~~a~~~~~~~--------~~~~~i~~~~~d~~~-~~--~~ 186 (405)
..++.+|||||||+|.++..+++.+. .+|+|+|+|+ +++.|++++..+ ++. +++++.+|+.+ ++ ++
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-nv~~~~~D~~~~l~~~~~ 125 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQ-NINVLRGNAMKFLPNFFE 125 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTT-TEEEEECCTTSCGGGTSC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCC-cEEEEeccHHHHHHHhcc
Confidence 35678999999999999999999753 4899999999 999999998876 664 69999999987 44 55
Q ss_pred CCceeEEEEccccccccC-----hhhHHHHHHHHHhcccCCcEEEe
Q 015534 187 VTKVDIIISEWMGYFLLF-----ENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~-----~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.+.+|.|+.......... ......++..+.++|+|||.++.
T Consensus 126 ~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~ 171 (246)
T 2vdv_E 126 KGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYT 171 (246)
T ss_dssp TTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEE
T ss_pred ccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEE
Confidence 688999986422111000 00014788899999999999885
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.1e-12 Score=116.33 Aligned_cols=101 Identities=16% Similarity=0.178 Sum_probs=81.2
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCC------CeEEEEechH-HHHHHHHHHHHcCC----CCcEEEEEccccccc---
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKAGA------AHVYAVECSQ-MANMAKQIVEANGF----SNVITVLKGKIEEIE--- 184 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~g~------~~V~~vD~s~-~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~--- 184 (405)
...++.+|||||||+|.++..+++... .+|+++|+++ +++.|++++...++ .++++++.+|+.+..
T Consensus 77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE 156 (227)
T ss_dssp TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence 456788999999999999999999632 5999999999 99999999998873 356999999998754
Q ss_pred -CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 185 -~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
...++||+|++...... ++..+.++|+|||+++..
T Consensus 157 ~~~~~~fD~I~~~~~~~~---------~~~~~~~~LkpgG~lv~~ 192 (227)
T 2pbf_A 157 KKELGLFDAIHVGASASE---------LPEILVDLLAENGKLIIP 192 (227)
T ss_dssp HHHHCCEEEEEECSBBSS---------CCHHHHHHEEEEEEEEEE
T ss_pred CccCCCcCEEEECCchHH---------HHHHHHHhcCCCcEEEEE
Confidence 33478999998654221 236667899999998753
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.37 E-value=7.2e-13 Score=123.29 Aligned_cols=107 Identities=21% Similarity=0.214 Sum_probs=76.7
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEE-EEccccccc--
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITV-LKGKIEEIE-- 184 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~-~~~d~~~~~-- 184 (405)
.+..++.......++.+|||||||||.++..+++.|+.+|+|+|+|+ |++.+.+. + .++.. ...++..+.
T Consensus 72 Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~---~---~rv~~~~~~ni~~l~~~ 145 (291)
T 3hp7_A 72 KLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ---D---DRVRSMEQYNFRYAEPV 145 (291)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT---C---TTEEEECSCCGGGCCGG
T ss_pred HHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---C---cccceecccCceecchh
Confidence 34444544434457889999999999999999999988999999999 99885432 1 23333 234554443
Q ss_pred -CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 185 -~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
++..+||+|+++.... .+..++.++.++|+|||.++.
T Consensus 146 ~l~~~~fD~v~~d~sf~------sl~~vL~e~~rvLkpGG~lv~ 183 (291)
T 3hp7_A 146 DFTEGLPSFASIDVSFI------SLNLILPALAKILVDGGQVVA 183 (291)
T ss_dssp GCTTCCCSEEEECCSSS------CGGGTHHHHHHHSCTTCEEEE
T ss_pred hCCCCCCCEEEEEeeHh------hHHHHHHHHHHHcCcCCEEEE
Confidence 3434599999965322 236788899999999999874
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2e-12 Score=117.38 Aligned_cols=100 Identities=22% Similarity=0.243 Sum_probs=79.0
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC-CceeEEEE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV-TKVDIIIS 195 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~Iv~ 195 (405)
....++.+|||||||+|.++..+++.+..+|+++|+++ +++.|++++...++.+ ++++.+|+ ...++. .+||+|++
T Consensus 87 l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~-~~~~~~~~~fD~Ii~ 164 (235)
T 1jg1_A 87 ANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKN-VHVILGDG-SKGFPPKAPYDVIIV 164 (235)
T ss_dssp HTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCG-GGCCGGGCCEEEEEE
T ss_pred cCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEECCc-ccCCCCCCCccEEEE
Confidence 45678889999999999999999995426999999999 9999999999998865 99999998 333332 35999998
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
......+ ...+.+.|+|||+++..
T Consensus 165 ~~~~~~~---------~~~~~~~L~pgG~lvi~ 188 (235)
T 1jg1_A 165 TAGAPKI---------PEPLIEQLKIGGKLIIP 188 (235)
T ss_dssp CSBBSSC---------CHHHHHTEEEEEEEEEE
T ss_pred CCcHHHH---------HHHHHHhcCCCcEEEEE
Confidence 6542222 12567899999998753
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.37 E-value=6.7e-12 Score=113.30 Aligned_cols=103 Identities=18% Similarity=0.182 Sum_probs=77.3
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC---CCCcee
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---PVTKVD 191 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~D 191 (405)
..+.+|.+|||+|||+|.++..+++. | ..+|+|+|+++ |++.+.+..... .++.++.+|+..... ..++||
T Consensus 72 ~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~~~~~~~~~D 148 (232)
T 3id6_C 72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQSYKSVVENVD 148 (232)
T ss_dssp CSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGGTTTTCCCEE
T ss_pred cCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchhhhccccceE
Confidence 34788999999999999999999984 3 56999999999 986665555443 359999999976431 136899
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+|+++.. . ......+...+.++|||||+++..
T Consensus 149 ~I~~d~a---~--~~~~~il~~~~~~~LkpGG~lvis 180 (232)
T 3id6_C 149 VLYVDIA---Q--PDQTDIAIYNAKFFLKVNGDMLLV 180 (232)
T ss_dssp EEEECCC---C--TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEecCC---C--hhHHHHHHHHHHHhCCCCeEEEEE
Confidence 9999743 1 223334455666699999999864
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=3.3e-12 Score=118.34 Aligned_cols=106 Identities=18% Similarity=0.217 Sum_probs=80.4
Q ss_pred CCCEEEEEcCCCcH----HHHHHHHc-C----CCeEEEEechH-HHHHHHHHHHH-----------------------cC
Q 015534 122 KDKVVLDVGAGTGI----LSLFCAKA-G----AAHVYAVECSQ-MANMAKQIVEA-----------------------NG 168 (405)
Q Consensus 122 ~~~~VLDiGcG~G~----l~~~la~~-g----~~~V~~vD~s~-~~~~a~~~~~~-----------------------~~ 168 (405)
++.+|||+|||||. +++.+++. | ..+|+|+|+|+ |++.|++.+-. .+
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999998 67777774 4 23899999999 99999986410 00
Q ss_pred -------CCCcEEEEEcccccccCC-CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 169 -------FSNVITVLKGKIEEIELP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 169 -------~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+.++|+|.+.|+.+.+++ .++||+|+|..+..++ .......++..+++.|+|||.++..
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf-~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF-DKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS-CHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhC-CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 013699999999886554 4789999996544333 3445688999999999999999864
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-12 Score=117.15 Aligned_cols=96 Identities=23% Similarity=0.247 Sum_probs=79.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc--ccCCCCceeEEEEcc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE--IELPVTKVDIIISEW 197 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~D~Iv~~~ 197 (405)
.++.+|||||||+|.++..+++.| .+|+|+|+|+ +++.|+++. .+++.+|+.+ .++++++||+|++..
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~~~fD~v~~~~ 101 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYEEEQFDCVIFGD 101 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSCTTCEEEEEEES
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCCCCccCEEEECC
Confidence 577899999999999999999986 6999999999 999888643 3688999987 445568999999965
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+.+ +..+...++..+.++|+|||.++..
T Consensus 102 ~l~---~~~~~~~~l~~~~~~L~~gG~l~~~ 129 (230)
T 3cc8_A 102 VLE---HLFDPWAVIEKVKPYIKQNGVILAS 129 (230)
T ss_dssp CGG---GSSCHHHHHHHTGGGEEEEEEEEEE
T ss_pred hhh---hcCCHHHHHHHHHHHcCCCCEEEEE
Confidence 433 3346678999999999999998863
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.8e-13 Score=122.28 Aligned_cols=106 Identities=14% Similarity=0.100 Sum_probs=77.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEech-H-HHHHH---HHHHHHcCCCCcEEEEEcccccccCC-CCceeEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECS-Q-MANMA---KQIVEANGFSNVITVLKGKIEEIELP-VTKVDII 193 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s-~-~~~~a---~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~I 193 (405)
.++.+|||||||+|.++..+++ .+..+|+|+|+| + |++.| ++++...+++ +++++.+|+++++.. ...+|.|
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~-~v~~~~~d~~~l~~~~~d~v~~i 101 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLS-NVVFVIAAAESLPFELKNIADSI 101 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCS-SEEEECCBTTBCCGGGTTCEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEcCHHHhhhhccCeEEEE
Confidence 5778999999999999999997 345589999999 6 87777 7777777775 599999999988531 1455666
Q ss_pred EEcccccccc-C-hhhHHHHHHHHHhcccCCcEEEe
Q 015534 194 ISEWMGYFLL-F-ENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 194 v~~~~~~~l~-~-~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+++....... + ....+.++.++.++|||||.++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 5543211110 0 01124678999999999999886
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-12 Score=125.28 Aligned_cols=108 Identities=16% Similarity=0.169 Sum_probs=84.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHc--CC-CCcEEEEEccccccc--CCCCceeEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEAN--GF-SNVITVLKGKIEEIE--LPVTKVDII 193 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~~--~~~~~~D~I 193 (405)
.++.+|||||||+|.++..+++. +..+|+++|+|+ +++.|++++... ++ ..+++++.+|+.+.. .+.++||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 45689999999999999999986 457999999999 999999988752 34 257999999998752 334789999
Q ss_pred EEccccccccChh-hHHHHHHHHHhcccCCcEEEec
Q 015534 194 ISEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 194 v~~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+++.......... ....++..+.++|+|||+++..
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9975422111111 1368899999999999999864
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-12 Score=111.60 Aligned_cols=106 Identities=13% Similarity=0.083 Sum_probs=76.5
Q ss_pred hHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc
Q 015534 106 RTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (405)
Q Consensus 106 r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (405)
....+.+.+... ..++.+|||+|||+|.++..+++.+ +|+|+|+|+ |++. .++++++++|+.+ .
T Consensus 9 ~~~~l~~~l~~~--~~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~----------~~~~~~~~~d~~~-~ 73 (170)
T 3q87_B 9 DTYTLMDALERE--GLEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES----------HRGGNLVRADLLC-S 73 (170)
T ss_dssp HHHHHHHHHHHH--TCCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT----------CSSSCEEECSTTT-T
T ss_pred cHHHHHHHHHhh--cCCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc----------ccCCeEEECChhh-h
Confidence 344444444321 2467799999999999999999987 999999999 9887 2458999999987 4
Q ss_pred CCCCceeEEEEcccccccc------ChhhHHHHHHHHHhcccCCcEEEe
Q 015534 185 LPVTKVDIIISEWMGYFLL------FENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~------~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
++.++||+|++++..+... .......++..+.+.| |||.++.
T Consensus 74 ~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~ 121 (170)
T 3q87_B 74 INQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYL 121 (170)
T ss_dssp BCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEE
T ss_pred cccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEE
Confidence 4458999999986532111 1112235666677777 9999874
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.4e-13 Score=133.02 Aligned_cols=113 Identities=18% Similarity=0.237 Sum_probs=86.7
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEE-EEEcccccccC
Q 015534 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVIT-VLKGKIEEIEL 185 (405)
Q Consensus 108 ~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~-~~~~d~~~~~~ 185 (405)
..+.+.+.......++.+|||||||+|.++..+++.|. +|+|+|+|+ +++.|+++ ++..... +...+...+++
T Consensus 93 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~ 167 (416)
T 4e2x_A 93 AMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRR 167 (416)
T ss_dssp HHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhccc
Confidence 34556666666667889999999999999999999877 999999999 99998875 4322111 22344555555
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
++++||+|++..+ +.+..++..++..+.++|||||+++..
T Consensus 168 ~~~~fD~I~~~~v---l~h~~d~~~~l~~~~r~LkpgG~l~i~ 207 (416)
T 4e2x_A 168 TEGPANVIYAANT---LCHIPYVQSVLEGVDALLAPDGVFVFE 207 (416)
T ss_dssp HHCCEEEEEEESC---GGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCEEEEEECCh---HHhcCCHHHHHHHHHHHcCCCeEEEEE
Confidence 5689999999655 334468889999999999999999864
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.4e-12 Score=121.50 Aligned_cols=107 Identities=20% Similarity=0.101 Sum_probs=81.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHH---cCCCCcEEEEEcccccccC--CCCceeEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEA---NGFSNVITVLKGKIEEIEL--PVTKVDII 193 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~---~~~~~~i~~~~~d~~~~~~--~~~~~D~I 193 (405)
.++.+|||||||+|.++..+++. +..+|+++|+++ +++.|++++.. .....+++++.+|+.++.. +.++||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 46689999999999999999986 467999999999 99999998742 1123579999999988753 35899999
Q ss_pred EEccccccccChhhH--HHHHHHHHhcccCCcEEEec
Q 015534 194 ISEWMGYFLLFENML--NTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 194 v~~~~~~~l~~~~~~--~~~l~~~~~~LkpgG~lip~ 228 (405)
+++....... ...+ ..++..+.++|||||+++..
T Consensus 174 i~d~~~~~~~-~~~l~~~~~l~~~~~~LkpgG~lv~~ 209 (304)
T 3bwc_A 174 IIDTTDPAGP-ASKLFGEAFYKDVLRILKPDGICCNQ 209 (304)
T ss_dssp EEECC----------CCHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCCcccc-chhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9976432211 1111 57889999999999999864
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-12 Score=122.70 Aligned_cols=108 Identities=18% Similarity=0.146 Sum_probs=81.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHH--cCC-CCcEEEEEcccccc-cCCCCceeEEEE
Q 015534 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEA--NGF-SNVITVLKGKIEEI-ELPVTKVDIIIS 195 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~--~~~-~~~i~~~~~d~~~~-~~~~~~~D~Iv~ 195 (405)
.+.+|||||||+|.++..+++. +..+|+++|+++ +++.|++++.. .++ .++++++.+|+.+. ....++||+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 4589999999999999999996 667999999999 99999998765 333 35799999998774 333478999999
Q ss_pred ccccccccChh--hHHHHHHHHHhcccCCcEEEecC
Q 015534 196 EWMGYFLLFEN--MLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 196 ~~~~~~l~~~~--~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+.......... ....++..+.++|+|||+++...
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 75422010001 12578889999999999998643
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.6e-12 Score=124.47 Aligned_cols=96 Identities=19% Similarity=0.296 Sum_probs=83.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
.++.+|||+|||+|.+++. ++ ++.+|+|+|+|+ +++.|++++..+++.++++++++|+.++. ++||+|++++..
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~ 268 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPK 268 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTT
T ss_pred CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcH
Confidence 4788999999999999999 88 678999999999 99999999999999778999999999875 789999998642
Q ss_pred ccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+. ..++..+.++|+|||.++..
T Consensus 269 ~~-------~~~l~~~~~~L~~gG~l~~~ 290 (336)
T 2yx1_A 269 FA-------HKFIDKALDIVEEGGVIHYY 290 (336)
T ss_dssp TG-------GGGHHHHHHHEEEEEEEEEE
T ss_pred hH-------HHHHHHHHHHcCCCCEEEEE
Confidence 21 25677788999999998753
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.34 E-value=2.5e-12 Score=115.31 Aligned_cols=91 Identities=23% Similarity=0.281 Sum_probs=76.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (405)
++.+|||||||+|.++..+++. +|+|+|+ +++.|+++ +++++.+|+.+++++.++||+|++..+.+
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 113 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTTIC 113 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESCGG
T ss_pred CCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc--------CCEEEEcccccCCCCCCCeeEEEEcchHh
Confidence 3789999999999998887654 9999999 99999876 37899999999887778999999965433
Q ss_pred cccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 201 FLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
++ ..+..++..+.++|+|||.++..
T Consensus 114 ~~---~~~~~~l~~~~~~L~pgG~l~i~ 138 (219)
T 1vlm_A 114 FV---DDPERALKEAYRILKKGGYLIVG 138 (219)
T ss_dssp GS---SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred hc---cCHHHHHHHHHHHcCCCcEEEEE
Confidence 33 56778999999999999998854
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=8.8e-12 Score=120.43 Aligned_cols=107 Identities=23% Similarity=0.277 Sum_probs=87.0
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (405)
....++.+|||||||+|.++..+++.+ ..+++++|+ + +++.|++++...++.++++++.+|+.+ .++ ..||+|++
T Consensus 179 ~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~ 255 (360)
T 1tw3_A 179 YDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLP-RKADAIIL 255 (360)
T ss_dssp SCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-SCEEEEEE
T ss_pred CCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCC-CCccEEEE
Confidence 445677899999999999999999853 458999999 8 999999999999988789999999976 344 45999998
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
..+.+.+ .......++..+.++|+|||+++..
T Consensus 256 ~~vl~~~-~~~~~~~~l~~~~~~L~pgG~l~i~ 287 (360)
T 1tw3_A 256 SFVLLNW-PDHDAVRILTRCAEALEPGGRILIH 287 (360)
T ss_dssp ESCGGGS-CHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccccCC-CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 6554333 2233458899999999999998854
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=7.9e-13 Score=123.47 Aligned_cols=107 Identities=19% Similarity=0.128 Sum_probs=82.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc--CC--------CCcEEEEEcccccccCCCCc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN--GF--------SNVITVLKGKIEEIELPVTK 189 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~--~~--------~~~i~~~~~d~~~~~~~~~~ 189 (405)
.++.+|||||||+|.++..+++.+..+|++||+++ +++.|++++ .. ++ .++++++.+|+.+.....++
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 35689999999999999999988777999999999 999999987 33 32 36799999998764211478
Q ss_pred eeEEEEccccccccChhh-HHHHHHHHHhcccCCcEEEec
Q 015534 190 VDIIISEWMGYFLLFENM-LNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~-~~~~l~~~~~~LkpgG~lip~ 228 (405)
||+|+++........... ...++..+.++|+|||+++..
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 192 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 192 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 999999764321110111 267889999999999999864
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.34 E-value=2.1e-12 Score=120.85 Aligned_cols=85 Identities=25% Similarity=0.338 Sum_probs=71.5
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc
Q 015534 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (405)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (405)
.+.|.......++.+|||||||+|.++..+++.+. +|+|+|+++ |++.|++++...++.++++++++|+.+++++ .
T Consensus 17 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~--~ 93 (285)
T 1zq9_A 17 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--F 93 (285)
T ss_dssp HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--C
T ss_pred HHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch--h
Confidence 33444445567888999999999999999999865 999999999 9999999988777656799999999987664 7
Q ss_pred eeEEEEccc
Q 015534 190 VDIIISEWM 198 (405)
Q Consensus 190 ~D~Iv~~~~ 198 (405)
||+|++++.
T Consensus 94 fD~vv~nlp 102 (285)
T 1zq9_A 94 FDTCVANLP 102 (285)
T ss_dssp CSEEEEECC
T ss_pred hcEEEEecC
Confidence 999999764
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.34 E-value=5e-12 Score=120.84 Aligned_cols=107 Identities=19% Similarity=0.163 Sum_probs=87.1
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (405)
....+ .+|||||||+|.++..+++. +..+++++|+ + +++.|++++...++.++++++.+|+.+ +++ ++||+|++
T Consensus 164 ~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~ 239 (334)
T 2ip2_A 164 LDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLL 239 (334)
T ss_dssp SCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEE
T ss_pred CCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEE
Confidence 33444 89999999999999999984 4569999999 9 999999998887777789999999987 555 78999999
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
..+.+.. .......++..+.+.|+|||+++...
T Consensus 240 ~~vl~~~-~~~~~~~~l~~~~~~L~pgG~l~i~e 272 (334)
T 2ip2_A 240 SRIIGDL-DEAASLRLLGNCREAMAGDGRVVVIE 272 (334)
T ss_dssp ESCGGGC-CHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred chhccCC-CHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 6554332 23345689999999999999988643
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.6e-12 Score=125.27 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=83.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEcc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEW 197 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~~ 197 (405)
.+|.+|||+|||+|.+++.+++.|+. |+|+|+|+ +++.|++++..+++.. ++.++|+.++. +. +.||+|++++
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~~~l~~~~-~~fD~Ii~dp 288 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALRLGLRV--DIRHGEALPTLRGLE-GPFHHVLLDP 288 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHHHHHHTCC-CCEEEEEECC
T ss_pred cCCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHHHHHHHhc-CCCCEEEECC
Confidence 46899999999999999999999875 99999999 9999999999999864 46699998753 23 4499999986
Q ss_pred ccccccC-------hhhHHHHHHHHHhcccCCcEEEec
Q 015534 198 MGYFLLF-------ENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 198 ~~~~l~~-------~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.. +... ......++..+.++|+|||.++..
T Consensus 289 P~-f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~ 325 (393)
T 4dmg_A 289 PT-LVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLS 325 (393)
T ss_dssp CC-CCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred Cc-CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 42 2211 123457788889999999998843
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.34 E-value=2e-12 Score=120.29 Aligned_cols=108 Identities=17% Similarity=0.117 Sum_probs=83.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHH--cCC-CCcEEEEEcccccc-cCCCCceeEEEE
Q 015534 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEA--NGF-SNVITVLKGKIEEI-ELPVTKVDIIIS 195 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~--~~~-~~~i~~~~~d~~~~-~~~~~~~D~Iv~ 195 (405)
.+.+|||||||+|.++..+++. |..+|++||+++ +++.|++++.. +++ .++++++.+|+.+. ....++||+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 5689999999999999999996 678999999999 99999998754 234 35799999998774 333478999999
Q ss_pred ccccccccChh-hHHHHHHHHHhcccCCcEEEecC
Q 015534 196 EWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 196 ~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+.......... ....++..+.++|+|||+++...
T Consensus 155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 76432111000 12578889999999999998653
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-12 Score=124.59 Aligned_cols=108 Identities=17% Similarity=0.161 Sum_probs=83.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHH--cCC-CCcEEEEEccccccc-CCCCceeEEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEA--NGF-SNVITVLKGKIEEIE-LPVTKVDIII 194 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~--~~~-~~~i~~~~~d~~~~~-~~~~~~D~Iv 194 (405)
.++.+|||||||+|.++..+++. +..+|+++|+++ +++.|++++.. +++ .++++++.+|+.+.. ...++||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 35689999999999999999986 567999999999 99999998765 233 357999999987742 2347899999
Q ss_pred EccccccccChhhH-HHHHHHHHhcccCCcEEEec
Q 015534 195 SEWMGYFLLFENML-NTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 195 ~~~~~~~l~~~~~~-~~~l~~~~~~LkpgG~lip~ 228 (405)
++............ ..++..+.++|+|||+++..
T Consensus 195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 229 (321)
T 2pt6_A 195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ 229 (321)
T ss_dssp EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 97542211111111 68889999999999999864
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2e-12 Score=126.06 Aligned_cols=106 Identities=21% Similarity=0.191 Sum_probs=87.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----CCCceeEEEEc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----PVTKVDIIISE 196 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~D~Iv~~ 196 (405)
++.+|||+|||+|.+++.+++. +.+|+|+|+|+ +++.|++++..+++.+ ++++.+|+.++.. ..++||+|+++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 7789999999999999999998 67999999999 9999999999999966 9999999987642 14789999998
Q ss_pred cccccccC------hhhHHHHHHHHHhcccCCcEEEecC
Q 015534 197 WMGYFLLF------ENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 197 ~~~~~l~~------~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+..+.... ......++..+.++|+|||.++.+.
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 325 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATAS 325 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 74322111 1345678888999999999988543
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.33 E-value=8.7e-13 Score=124.85 Aligned_cols=108 Identities=21% Similarity=0.242 Sum_probs=80.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHc--CC-CCcEEEEEcccccc-cCCCCceeEEEE
Q 015534 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEAN--GF-SNVITVLKGKIEEI-ELPVTKVDIIIS 195 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~-~~~~~~~D~Iv~ 195 (405)
++.+|||||||+|.++..+++. +..+|+++|+++ +++.|++++... ++ .++++++.+|+.+. ....++||+|++
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 5679999999999999999986 467999999999 999999988653 33 36799999999774 223478999999
Q ss_pred ccccccccChhhH-HHHHHHHHhcccCCcEEEecC
Q 015534 196 EWMGYFLLFENML-NTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 196 ~~~~~~l~~~~~~-~~~l~~~~~~LkpgG~lip~~ 229 (405)
+............ ..++..+.++|+|||+++...
T Consensus 188 d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 188 DSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp CCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred cCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 7643211111111 678899999999999998654
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=4.5e-12 Score=123.09 Aligned_cols=109 Identities=18% Similarity=0.138 Sum_probs=86.0
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCC-CeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~-~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (405)
+...+.... ..++.+|||+|||+|.+++.+++.+. .+|+|+|+|+ |++.|++++..+++.++++++++|+.+++.+.
T Consensus 206 la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~ 284 (373)
T 3tm4_A 206 IANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYV 284 (373)
T ss_dssp HHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTC
T ss_pred HHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCccc
Confidence 333344334 56788999999999999999999754 4999999999 99999999999999778999999999998777
Q ss_pred CceeEEEEcccccc-ccC----hhhHHHHHHHHHhcc
Q 015534 188 TKVDIIISEWMGYF-LLF----ENMLNTVLYARDKWL 219 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~-l~~----~~~~~~~l~~~~~~L 219 (405)
++||+|++++.... +.. +.....++..+.++|
T Consensus 285 ~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l 321 (373)
T 3tm4_A 285 DSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL 321 (373)
T ss_dssp SCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE
T ss_pred CCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc
Confidence 89999999864211 111 122367788888888
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.4e-12 Score=118.57 Aligned_cols=97 Identities=9% Similarity=0.104 Sum_probs=77.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-----CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc---cC-CCCcee
Q 015534 122 KDKVVLDVGAGTGILSLFCAKA-----GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI---EL-PVTKVD 191 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~-----g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~-~~~~~D 191 (405)
++.+|||||||+|..+..+++. +..+|+|+|+++ |++.|+ ++.++++++++|+.+. +. ...+||
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~~~v~~~~gD~~~~~~l~~~~~~~fD 154 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGDCSDLTTFEHLREMAHP 154 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECCSSCSGGGGGGSSSCSS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccCCceEEEECcchhHHHHHhhccCCCC
Confidence 5679999999999999999986 346999999999 999887 2235799999999884 32 324799
Q ss_pred EEEEccccccccChhhHHHHHHHHHh-cccCCcEEEecCc
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDK-WLVDDGIVLPDKA 230 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~-~LkpgG~lip~~~ 230 (405)
+|++... + .....++..+.+ +|||||+++....
T Consensus 155 ~I~~d~~-----~-~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 155 LIFIDNA-----H-ANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp EEEEESS-----C-SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred EEEECCc-----h-HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 9998543 1 255678888887 9999999997664
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.6e-12 Score=119.15 Aligned_cols=104 Identities=12% Similarity=0.179 Sum_probs=81.7
Q ss_pred CEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEcccc
Q 015534 124 KVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEWMG 199 (405)
Q Consensus 124 ~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~~~~ 199 (405)
.+|||||||+|.++..+++ .+..+|++||+++ +++.|++++.... ..+++++.+|..++. .+.++||+|+++.+.
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 4999999999999999999 5555999999999 9999999875432 357999999998763 345789999997543
Q ss_pred ccccChh-hHHHHHHHHHhcccCCcEEEec
Q 015534 200 YFLLFEN-MLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 200 ~~l~~~~-~~~~~l~~~~~~LkpgG~lip~ 228 (405)
....... ....++..+.++|+|||+++..
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~ 199 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVAN 199 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 2211111 1267899999999999999854
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.32 E-value=9.5e-12 Score=120.88 Aligned_cols=100 Identities=11% Similarity=0.173 Sum_probs=83.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCC-CeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc-ccC-CCCceeEEEE
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-IEL-PVTKVDIIIS 195 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~-~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~-~~~~~D~Iv~ 195 (405)
..++.+|||+| |+|.++..+++.+. .+|+++|+++ |++.|++++..+++. +++++.+|+.+ ++. ..++||+|++
T Consensus 170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~~~~fD~Vi~ 247 (373)
T 2qm3_A 170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYALHKFDTFIT 247 (373)
T ss_dssp CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTTSSCBSEEEE
T ss_pred CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhccCCccEEEE
Confidence 34688999999 99999999999765 7999999999 999999999999986 79999999988 543 2368999999
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEE
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIV 225 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 225 (405)
+++.. . .....++..+.++|+|||++
T Consensus 248 ~~p~~-~---~~~~~~l~~~~~~LkpgG~~ 273 (373)
T 2qm3_A 248 DPPET-L---EAIRAFVGRGIATLKGPRCA 273 (373)
T ss_dssp CCCSS-H---HHHHHHHHHHHHTBCSTTCE
T ss_pred CCCCc-h---HHHHHHHHHHHHHcccCCeE
Confidence 86421 1 13578899999999999954
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.5e-12 Score=121.91 Aligned_cols=109 Identities=17% Similarity=0.141 Sum_probs=84.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHH--cC-C-CCcEEEEEcccccc-cCCCCceeEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEA--NG-F-SNVITVLKGKIEEI-ELPVTKVDII 193 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~--~~-~-~~~i~~~~~d~~~~-~~~~~~~D~I 193 (405)
.++.+|||||||+|.++..+++. +..+|+++|+++ +++.|++++.. .+ + .++++++.+|+.+. ....++||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 35689999999999999999986 567999999999 99999998764 22 2 35799999999874 3334789999
Q ss_pred EEcccccc-ccC-hhh--HHHHHHHHHhcccCCcEEEecC
Q 015534 194 ISEWMGYF-LLF-ENM--LNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 194 v~~~~~~~-l~~-~~~--~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+++..... ... ... ...++..+.++|+|||+++...
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 99764322 001 111 3688999999999999998653
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=5.5e-12 Score=118.91 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=81.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHH--cCC-CCcEEEEEcccccc-cCCCCceeEEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEA--NGF-SNVITVLKGKIEEI-ELPVTKVDIII 194 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~--~~~-~~~i~~~~~d~~~~-~~~~~~~D~Iv 194 (405)
.++.+|||||||+|.++..+++. +..+|++||+++ +++.|++++.. .++ .++++++.+|+.+. ....++||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 45689999999999999999986 457999999999 99999998865 344 36799999999774 33347899999
Q ss_pred EccccccccCh-hhHHHHHHHHHhcccCCcEEEec
Q 015534 195 SEWMGYFLLFE-NMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 195 ~~~~~~~l~~~-~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
++......... .....++..+.++|+|||+++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 208 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ 208 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEe
Confidence 97543211000 11246788999999999999864
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.31 E-value=4.9e-12 Score=114.12 Aligned_cols=99 Identities=17% Similarity=0.184 Sum_probs=78.1
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHH-cCC------CeEEEEechH-HHHHHHHHHHHcCC----CCcEEEEEcccccccCC
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAK-AGA------AHVYAVECSQ-MANMAKQIVEANGF----SNVITVLKGKIEEIELP 186 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~-~g~------~~V~~vD~s~-~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~ 186 (405)
...++.+|||||||+|.++..+++ .+. .+|+++|+++ +++.|++++...++ ..+++++.+|..+. ++
T Consensus 81 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~ 159 (227)
T 1r18_A 81 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKG-YP 159 (227)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGC-CG
T ss_pred hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccC-CC
Confidence 356788999999999999999998 443 5999999999 99999999887651 14699999999873 33
Q ss_pred C-CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 187 V-TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 187 ~-~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
. ++||+|++......+ ...+.+.|||||+++.
T Consensus 160 ~~~~fD~I~~~~~~~~~---------~~~~~~~LkpgG~lvi 192 (227)
T 1r18_A 160 PNAPYNAIHVGAAAPDT---------PTELINQLASGGRLIV 192 (227)
T ss_dssp GGCSEEEEEECSCBSSC---------CHHHHHTEEEEEEEEE
T ss_pred cCCCccEEEECCchHHH---------HHHHHHHhcCCCEEEE
Confidence 2 689999986542221 2567789999999874
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.3e-12 Score=130.86 Aligned_cols=100 Identities=24% Similarity=0.249 Sum_probs=77.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc--cCCCCceeEEEEcc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--ELPVTKVDIIISEW 197 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~Iv~~~ 197 (405)
.++.+|||||||+|.++..+|+.|+ .|+|||.++ +++.|+.++...+.. +|++.+++++++ ...+++||+|+|.-
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDF-AAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTS-EEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCC-ceEEEECCHHHHhhhccCCCccEEEECc
Confidence 4567999999999999999999988 999999999 999999999888753 499999999998 34557999999955
Q ss_pred ccccccChhhHHHH--HHHHHhcccCCcEE
Q 015534 198 MGYFLLFENMLNTV--LYARDKWLVDDGIV 225 (405)
Q Consensus 198 ~~~~l~~~~~~~~~--l~~~~~~LkpgG~l 225 (405)
+.+++ .++..+ +..+.+.|+++|..
T Consensus 143 ~~ehv---~~~~~~~~~~~~~~tl~~~~~~ 169 (569)
T 4azs_A 143 VFHHI---VHLHGIDEVKRLLSRLADVTQA 169 (569)
T ss_dssp CHHHH---HHHHCHHHHHHHHHHHHHHSSE
T ss_pred chhcC---CCHHHHHHHHHHHHHhccccce
Confidence 54444 333222 22344556676654
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=4e-12 Score=125.87 Aligned_cols=111 Identities=15% Similarity=0.059 Sum_probs=87.5
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-CCCceeEEE
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-PVTKVDIII 194 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~Iv 194 (405)
...++.+|||+|||+|..+..+++. +..+|+|+|+|+ +++.+++++..+|+. ++++++|+.++.. ..++||+|+
T Consensus 98 ~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~~~~~~FD~Il 175 (464)
T 3m6w_A 98 DPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAEAFGTYFHRVL 175 (464)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHHHHCSCEEEEE
T ss_pred CcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhhhccccCCEEE
Confidence 4568899999999999999999984 336999999999 999999999999985 9999999988751 247899999
Q ss_pred Ecccccc--c--cCh--------h-------hHHHHHHHHHhcccCCcEEEecCce
Q 015534 195 SEWMGYF--L--LFE--------N-------MLNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 195 ~~~~~~~--l--~~~--------~-------~~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
+++.... . .++ . ....++..+.++|||||+++.++++
T Consensus 176 ~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs 231 (464)
T 3m6w_A 176 LDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCT 231 (464)
T ss_dssp EECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred ECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 8643111 1 000 1 1267888999999999999976544
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-12 Score=118.67 Aligned_cols=106 Identities=17% Similarity=0.181 Sum_probs=70.1
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEE-Eccccccc---
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVL-KGKIEEIE--- 184 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~-~~d~~~~~--- 184 (405)
+..++.......++.+|||||||+|.++..+++.|+.+|+|+|+|+ |++.|+++... +... ..++..+.
T Consensus 25 L~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~------~~~~~~~~~~~~~~~~ 98 (232)
T 3opn_A 25 LEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDER------VVVMEQFNFRNAVLAD 98 (232)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTT------EEEECSCCGGGCCGGG
T ss_pred HHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCcc------ccccccceEEEeCHhH
Confidence 3344444444456789999999999999999999878999999999 99987764321 2221 11222111
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
++...+|.+.++.+... +..++..+.++|||||.++.
T Consensus 99 ~~~~~~d~~~~D~v~~~------l~~~l~~i~rvLkpgG~lv~ 135 (232)
T 3opn_A 99 FEQGRPSFTSIDVSFIS------LDLILPPLYEILEKNGEVAA 135 (232)
T ss_dssp CCSCCCSEEEECCSSSC------GGGTHHHHHHHSCTTCEEEE
T ss_pred cCcCCCCEEEEEEEhhh------HHHHHHHHHHhccCCCEEEE
Confidence 12123555555432111 25688899999999999885
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-11 Score=108.93 Aligned_cols=90 Identities=20% Similarity=0.124 Sum_probs=71.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
..++.+|||+|||+|.++..+++.|..+|+|+|+|+ +++.|++++. +++++++|+.+++ ++||+|++++.
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~~---~~~D~v~~~~p 119 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEIS---GKYDTWIMNPP 119 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGCC---CCEEEEEECCC
T ss_pred CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHCC---CCeeEEEECCC
Confidence 457789999999999999999998877899999999 9999998764 4899999999863 78999999876
Q ss_pred cccccChhhHHHHHHHHHhcc
Q 015534 199 GYFLLFENMLNTVLYARDKWL 219 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~L 219 (405)
.+.... .....++..+.+.+
T Consensus 120 ~~~~~~-~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 120 FGSVVK-HSDRAFIDKAFETS 139 (200)
T ss_dssp C--------CHHHHHHHHHHE
T ss_pred chhccC-chhHHHHHHHHHhc
Confidence 443322 22346777777777
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.1e-11 Score=109.10 Aligned_cols=99 Identities=16% Similarity=0.165 Sum_probs=81.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
.++.+|||||||+|.+++.++ +..+|+|+|+++ +++.+++++..++. ...+..+|....+++ ++||+|++..+.
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~--~~~~~v~D~~~~~~~-~~~DvvLllk~l 178 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDW--DFTFALQDVLCAPPA-EAGDLALIFKLL 178 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTC--EEEEEECCTTTSCCC-CBCSEEEEESCH
T ss_pred CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeecccCCCC-CCcchHHHHHHH
Confidence 567899999999999999988 677999999999 99999999999884 489999999888776 799999987665
Q ss_pred ccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
++|.+... ...+ .+...|+++|++|
T Consensus 179 h~LE~q~~-~~~~-~ll~aL~~~~vvV 203 (253)
T 3frh_A 179 PLLEREQA-GSAM-ALLQSLNTPRMAV 203 (253)
T ss_dssp HHHHHHST-THHH-HHHHHCBCSEEEE
T ss_pred HHhhhhch-hhHH-HHHHHhcCCCEEE
Confidence 66643322 2333 5566889999887
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-11 Score=106.25 Aligned_cols=99 Identities=18% Similarity=0.249 Sum_probs=75.8
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc-CC-CeEEEEechHHHHHHHHHHHHcCCCCcEEEEEccccccc--------CCC
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------LPV 187 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~-g~-~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~ 187 (405)
....++.+|||+|||+|.++..+++. |. .+|+|+|++++++ . .+++++.+|+.+.+ ++.
T Consensus 18 ~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~----------~-~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (180)
T 1ej0_A 18 KLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP----------I-VGVDFLQGDFRDELVMKALLERVGD 86 (180)
T ss_dssp CCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC----------C-TTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred CCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc----------c-CcEEEEEcccccchhhhhhhccCCC
Confidence 34567889999999999999999996 53 6999999998221 1 35999999998875 556
Q ss_pred CceeEEEEccccccccCh--hh------HHHHHHHHHhcccCCcEEEe
Q 015534 188 TKVDIIISEWMGYFLLFE--NM------LNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~--~~------~~~~l~~~~~~LkpgG~lip 227 (405)
++||+|+++...+..... .. ...++..+.++|+|||.++.
T Consensus 87 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~ 134 (180)
T 1ej0_A 87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVV 134 (180)
T ss_dssp CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 799999997653332221 01 15788999999999999884
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.27 E-value=8.3e-12 Score=115.46 Aligned_cols=91 Identities=20% Similarity=0.237 Sum_probs=76.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
.++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|+++. .++.++.+|+.++++++++||+|++...
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 157 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTSMDAIIRIYA 157 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTCEEEEEEESC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhCCCCCCceeEEEEeCC
Confidence 56789999999999999999996 345999999999 999998764 3478999999988877789999998432
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
...+..+.++|||||.++.
T Consensus 158 ----------~~~l~~~~~~L~pgG~l~~ 176 (269)
T 1p91_A 158 ----------PCKAEELARVVKPGGWVIT 176 (269)
T ss_dssp ----------CCCHHHHHHHEEEEEEEEE
T ss_pred ----------hhhHHHHHHhcCCCcEEEE
Confidence 1246778899999999885
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-11 Score=114.81 Aligned_cols=108 Identities=16% Similarity=0.119 Sum_probs=83.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcC--C-CCcEEEEEccccccc-CCCCceeEEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANG--F-SNVITVLKGKIEEIE-LPVTKVDIII 194 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~-~~~~~~D~Iv 194 (405)
.++.+|||||||+|.++..+++. +..+|+++|+++ +++.|++++...+ + ..+++++.+|+.+.. ...++||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 35689999999999999999986 467999999999 9999999876432 2 257999999997752 2247899999
Q ss_pred EccccccccChhhH--HHHHHHHHhcccCCcEEEecC
Q 015534 195 SEWMGYFLLFENML--NTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 195 ~~~~~~~l~~~~~~--~~~l~~~~~~LkpgG~lip~~ 229 (405)
++...... ....+ ..++..+.++|+|||+++...
T Consensus 157 ~d~~~~~~-~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 157 VDSSDPIG-PAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EECCCTTT-GGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCC-cchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 97543221 11222 688999999999999998653
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-11 Score=108.90 Aligned_cols=97 Identities=18% Similarity=0.213 Sum_probs=72.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-C--CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEccccccc------------
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKA-G--AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE------------ 184 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~-g--~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------------ 184 (405)
..++.+|||||||+|.++..+++. + ..+|+|+|+|++. .. .+++++++|+.+..
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----------~~-~~v~~~~~d~~~~~~~~~~~~~~i~~ 88 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----------PI-PNVYFIQGEIGKDNMNNIKNINYIDN 88 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----------CC-TTCEEEECCTTTTSSCCC--------
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----------CC-CCceEEEccccchhhhhhcccccccc
Confidence 467889999999999999999985 4 4699999999921 12 35899999998775
Q ss_pred -------------CCCCceeEEEEccccccccC-hhh-------HHHHHHHHHhcccCCcEEEe
Q 015534 185 -------------LPVTKVDIIISEWMGYFLLF-ENM-------LNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 185 -------------~~~~~~D~Iv~~~~~~~l~~-~~~-------~~~~l~~~~~~LkpgG~lip 227 (405)
++.++||+|+++...+.... ..+ ...++..+.++|||||.++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~ 152 (201)
T 2plw_A 89 MNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIV 152 (201)
T ss_dssp ---CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 45578999999764332110 011 12477888999999999884
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-11 Score=122.54 Aligned_cols=112 Identities=19% Similarity=0.057 Sum_probs=87.8
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEE
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIII 194 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Iv 194 (405)
...++.+|||+|||+|..+..+++. +..+|+|+|+++ +++.+++++.++|+. ++.++++|+.++. ...++||+|+
T Consensus 102 ~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~Da~~l~~~~~~~FD~Il 180 (456)
T 3m4x_A 102 AAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-NAIVTNHAPAELVPHFSGFFDRIV 180 (456)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECCCHHHHHHHHTTCEEEEE
T ss_pred CCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhhhccccCCEEE
Confidence 4578899999999999999999984 346999999999 999999999999996 5999999998875 1237899999
Q ss_pred Ecccccc--c--cCh---------------hhHHHHHHHHHhcccCCcEEEecCce
Q 015534 195 SEWMGYF--L--LFE---------------NMLNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 195 ~~~~~~~--l--~~~---------------~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
++..... . .++ .....++..+.++|||||+++.++++
T Consensus 181 ~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 236 (456)
T 3m4x_A 181 VDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCT 236 (456)
T ss_dssp EECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred ECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEee
Confidence 8753111 1 111 11236788889999999999976544
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-11 Score=111.43 Aligned_cols=112 Identities=9% Similarity=0.036 Sum_probs=87.6
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015534 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (405)
Q Consensus 108 ~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (405)
+.+...+.... .+..+|||||||+|.+++.++.. +..+|+|+|+++ |++.+++++..+|+. .++.+.|...-+.
T Consensus 120 D~fY~~i~~~i--~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~~~~p 195 (281)
T 3lcv_B 120 DEFYRELFRHL--PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLLEDRL 195 (281)
T ss_dssp HHHHHHHGGGS--CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTTTSCC
T ss_pred HHHHHHHHhcc--CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeecccCC
Confidence 34444444333 44679999999999999999885 778999999999 999999999999975 7888888877765
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
+ ++||++++..+.++|..+.. ...+ .+...|+|+|++|
T Consensus 196 ~-~~~DvaL~lkti~~Le~q~k-g~g~-~ll~aL~~~~vvV 233 (281)
T 3lcv_B 196 D-EPADVTLLLKTLPCLETQQR-GSGW-EVIDIVNSPNIVV 233 (281)
T ss_dssp C-SCCSEEEETTCHHHHHHHST-THHH-HHHHHSSCSEEEE
T ss_pred C-CCcchHHHHHHHHHhhhhhh-HHHH-HHHHHhCCCCEEE
Confidence 5 89999999776555533222 2334 6778899999988
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.2e-11 Score=121.67 Aligned_cols=109 Identities=13% Similarity=0.037 Sum_probs=86.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-CCCceeEEEEcc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-PVTKVDIIISEW 197 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~Iv~~~ 197 (405)
++.+|||+|||+|..+..+++. + ..+|+|+|+++ +++.+++++..+|+. +++++++|+..+.. ..++||+|++++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~D~~~~~~~~~~~fD~Il~D~ 195 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS-NVALTHFDGRVFGAAVPEMFDAILLDA 195 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHhhhhccccCCEEEECC
Confidence 8899999999999999999984 2 46999999999 999999999999985 59999999988753 347899999864
Q ss_pred cccc---c-cCh---------------hhHHHHHHHHHhcccCCcEEEecCce
Q 015534 198 MGYF---L-LFE---------------NMLNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 198 ~~~~---l-~~~---------------~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
.... + .++ .....++..+.++|||||+++.++++
T Consensus 196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs 248 (479)
T 2frx_A 196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT 248 (479)
T ss_dssp CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 3111 1 111 11246788889999999999976544
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.7e-11 Score=117.93 Aligned_cols=118 Identities=13% Similarity=0.109 Sum_probs=92.9
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCC---------------------------------------CeE
Q 015534 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA---------------------------------------AHV 148 (405)
Q Consensus 108 ~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~---------------------------------------~~V 148 (405)
+.+..+|.......++.+|||+|||+|.+++.++..+. .+|
T Consensus 181 e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V 260 (385)
T 3ldu_A 181 ETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKI 260 (385)
T ss_dssp HHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCE
T ss_pred HHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceE
Confidence 34666677667777889999999999999999988532 379
Q ss_pred EEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc-ccccChhhHHHHHHHHHhcccC--CcE
Q 015534 149 YAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG-YFLLFENMLNTVLYARDKWLVD--DGI 224 (405)
Q Consensus 149 ~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~-~~l~~~~~~~~~l~~~~~~Lkp--gG~ 224 (405)
+|+|+++ +++.|++++..+++.+.|++.++|+.++..+ .+||+|++++.. .-+.....+..+...+.+.||+ |+.
T Consensus 261 ~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~ 339 (385)
T 3ldu_A 261 YGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWS 339 (385)
T ss_dssp EEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCE
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCE
Confidence 9999999 9999999999999987899999999998765 699999999742 1122234556677777777776 555
Q ss_pred EE
Q 015534 225 VL 226 (405)
Q Consensus 225 li 226 (405)
+.
T Consensus 340 ~~ 341 (385)
T 3ldu_A 340 YY 341 (385)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.2e-11 Score=119.97 Aligned_cols=111 Identities=14% Similarity=0.117 Sum_probs=87.4
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc-CC-CeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEE
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDII 193 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~-g~-~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~I 193 (405)
...++.+|||+|||+|..+..+++. +. .+|+|+|+++ +++.+++++...|+. +++++++|+.++. ++.++||+|
T Consensus 256 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~fD~V 334 (450)
T 2yxl_A 256 DPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK-IVKPLVKDARKAPEIIGEEVADKV 334 (450)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCTTCCSSSSCSSCEEEE
T ss_pred CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEEEcChhhcchhhccCCCCEE
Confidence 4578889999999999999999984 33 6999999999 999999999999985 5999999998875 444789999
Q ss_pred EEcccccc---ccChhh----------------HHHHHHHHHhcccCCcEEEecCc
Q 015534 194 ISEWMGYF---LLFENM----------------LNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 194 v~~~~~~~---l~~~~~----------------~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
++++.... +...++ ...++..+.++|||||+++..++
T Consensus 335 l~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tc 390 (450)
T 2yxl_A 335 LLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTC 390 (450)
T ss_dssp EEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred EEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 98642111 111111 15788899999999999986543
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.2e-11 Score=113.49 Aligned_cols=81 Identities=21% Similarity=0.315 Sum_probs=65.2
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (405)
+.......++.+|||||||+|.++..+++.+ .+|+|+|+++ +++.|++++..+++ ++++++.+|+.++++ ++||+
T Consensus 34 i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~-~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~~~--~~~D~ 109 (299)
T 2h1r_A 34 IIYAAKIKSSDIVLEIGCGTGNLTVKLLPLA-KKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKTVF--PKFDV 109 (299)
T ss_dssp HHHHHCCCTTCEEEEECCTTSTTHHHHTTTS-SEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSSCC--CCCSE
T ss_pred HHHhcCCCCcCEEEEEcCcCcHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhCCc--ccCCE
Confidence 3333445678899999999999999999985 4999999999 99999999988877 569999999988765 48999
Q ss_pred EEEccc
Q 015534 193 IISEWM 198 (405)
Q Consensus 193 Iv~~~~ 198 (405)
|++++.
T Consensus 110 Vv~n~p 115 (299)
T 2h1r_A 110 CTANIP 115 (299)
T ss_dssp EEEECC
T ss_pred EEEcCC
Confidence 999864
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.5e-11 Score=114.93 Aligned_cols=118 Identities=15% Similarity=0.219 Sum_probs=93.9
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCC---------------------------------------CeE
Q 015534 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA---------------------------------------AHV 148 (405)
Q Consensus 108 ~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~---------------------------------------~~V 148 (405)
+.+..++.......++..|||.+||+|.+++.++..+. .+|
T Consensus 180 e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v 259 (384)
T 3ldg_A 180 ENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDI 259 (384)
T ss_dssp HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred HHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceE
Confidence 34566666666777889999999999999999887433 359
Q ss_pred EEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc-cccccChhhHHHHHHHHHhcccC--CcE
Q 015534 149 YAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM-GYFLLFENMLNTVLYARDKWLVD--DGI 224 (405)
Q Consensus 149 ~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~-~~~l~~~~~~~~~l~~~~~~Lkp--gG~ 224 (405)
+|+|+++ |++.|++++..+|+.+.++++++|+.++..+ .+||+|++++. +.-+..+..+..+...+.+.||+ ||.
T Consensus 260 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~ 338 (384)
T 3ldg_A 260 SGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWS 338 (384)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSE
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcE
Confidence 9999999 9999999999999988899999999998766 68999999974 22233345667777777777775 666
Q ss_pred EE
Q 015534 225 VL 226 (405)
Q Consensus 225 li 226 (405)
+.
T Consensus 339 ~~ 340 (384)
T 3ldg_A 339 QF 340 (384)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=6.5e-11 Score=116.58 Aligned_cols=98 Identities=19% Similarity=0.235 Sum_probs=79.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
..++.+|||+|||+|.+++.+++.+ .+|+|+|+|+ +++.|++++..+++. ++++.+|+.++. + .+||+|++++.
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~~-~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~~-~-~~fD~Vv~dPP 362 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKRG-FNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREVS-V-KGFDTVIVDPP 362 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTCC-C-TTCSEEEECCC
T ss_pred cCCCCEEEEeeccchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHcC-c-cCCCEEEEcCC
Confidence 4577899999999999999999974 5999999999 999999999999985 999999999874 3 38999999864
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
-. +....++..+. .|+|+|+++.+
T Consensus 363 r~-----g~~~~~~~~l~-~l~p~givyvs 386 (425)
T 2jjq_A 363 RA-----GLHPRLVKRLN-REKPGVIVYVS 386 (425)
T ss_dssp TT-----CSCHHHHHHHH-HHCCSEEEEEE
T ss_pred cc-----chHHHHHHHHH-hcCCCcEEEEE
Confidence 21 11223445443 48999988754
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.8e-11 Score=117.05 Aligned_cols=118 Identities=13% Similarity=0.122 Sum_probs=91.4
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCC---------------------------------------CeE
Q 015534 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA---------------------------------------AHV 148 (405)
Q Consensus 108 ~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~---------------------------------------~~V 148 (405)
+.+..++.......++..|||++||+|.+++.++..+. .+|
T Consensus 187 e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V 266 (393)
T 3k0b_A 187 ETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNI 266 (393)
T ss_dssp HHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred HHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceE
Confidence 34566666666777888999999999999999888433 359
Q ss_pred EEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc-ccccChhhHHHHHHHHHhcccC--CcE
Q 015534 149 YAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG-YFLLFENMLNTVLYARDKWLVD--DGI 224 (405)
Q Consensus 149 ~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~-~~l~~~~~~~~~l~~~~~~Lkp--gG~ 224 (405)
+|+|+++ |++.|++++..+|+.++++++++|+.+++.+ .+||+|++++.. .-+.....+..+...+.+.||+ ||.
T Consensus 267 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~ 345 (393)
T 3k0b_A 267 IGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWS 345 (393)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCE
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCE
Confidence 9999999 9999999999999988899999999998766 699999999742 1121223455666666666665 666
Q ss_pred EE
Q 015534 225 VL 226 (405)
Q Consensus 225 li 226 (405)
+.
T Consensus 346 ~~ 347 (393)
T 3k0b_A 346 VY 347 (393)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3.1e-11 Score=110.89 Aligned_cols=107 Identities=13% Similarity=0.118 Sum_probs=78.9
Q ss_pred CCCEEEEEcCCC---cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----C--CCce
Q 015534 122 KDKVVLDVGAGT---GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----P--VTKV 190 (405)
Q Consensus 122 ~~~~VLDiGcG~---G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~--~~~~ 190 (405)
...+|||||||+ |.+...+.+ .+..+|+++|.|+ |++.|++++...+ ..+++++++|+.+... + .+.|
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~~~~~~~l~~~~~~~~~ 156 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADMLDPASILDAPELRDTL 156 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEecccChhhhhccccccccc
Confidence 346899999997 344444433 4556999999999 9999999887543 2479999999987520 0 1334
Q ss_pred e-----EEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 191 D-----IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 191 D-----~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
| .|+++.+.+++.....+..++..+.+.|+|||+++.+.
T Consensus 157 D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~ 200 (277)
T 3giw_A 157 DLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSI 200 (277)
T ss_dssp CTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEE
T ss_pred CcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEe
Confidence 4 56777666777555457789999999999999998653
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.4e-11 Score=116.87 Aligned_cols=95 Identities=19% Similarity=0.185 Sum_probs=74.3
Q ss_pred CCCCEEEEEcCC------CcHHHHHHHH-c-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC-----
Q 015534 121 FKDKVVLDVGAG------TGILSLFCAK-A-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP----- 186 (405)
Q Consensus 121 ~~~~~VLDiGcG------~G~l~~~la~-~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~----- 186 (405)
.++.+||||||| +|..++.+++ . +..+|+|+|+|+ |.. ...+++++++|+.++++.
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~----------~~~rI~fv~GDa~dlpf~~~l~~ 284 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV----------DELRIRTIQGDQNDAEFLDRIAR 284 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG----------CBTTEEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh----------cCCCcEEEEecccccchhhhhhc
Confidence 456899999999 6666666665 3 456999999999 831 125799999999987654
Q ss_pred -CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 187 -VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 187 -~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
.++||+|+++.. ++......++..+.++|||||+++..+
T Consensus 285 ~d~sFDlVisdgs----H~~~d~~~aL~el~rvLKPGGvlVi~D 324 (419)
T 3sso_A 285 RYGPFDIVIDDGS----HINAHVRTSFAALFPHVRPGGLYVIED 324 (419)
T ss_dssp HHCCEEEEEECSC----CCHHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred ccCCccEEEECCc----ccchhHHHHHHHHHHhcCCCeEEEEEe
Confidence 589999999643 233567789999999999999998654
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=4.8e-12 Score=117.53 Aligned_cols=105 Identities=17% Similarity=0.157 Sum_probs=73.9
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHHHHHHHHH-HHcCCCCcEEEE--EcccccccCCCCceeEEE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIV-EANGFSNVITVL--KGKIEEIELPVTKVDIII 194 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~-~~~~~~~~i~~~--~~d~~~~~~~~~~~D~Iv 194 (405)
....++.+|||||||+|.++..+++. .+|+|||+++|+..+++.. .......+++++ ++|+.+++ +++||+|+
T Consensus 78 ~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vv 153 (276)
T 2wa2_A 78 GGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVL 153 (276)
T ss_dssp TSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEE
T ss_pred CCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEE
Confidence 44567889999999999999999998 5999999999433332210 001111258899 99998875 47999999
Q ss_pred EccccccccCh-hh-H--HHHHHHHHhcccCCc--EEEe
Q 015534 195 SEWMGYFLLFE-NM-L--NTVLYARDKWLVDDG--IVLP 227 (405)
Q Consensus 195 ~~~~~~~l~~~-~~-~--~~~l~~~~~~LkpgG--~lip 227 (405)
|+.. +..... .+ . ..++..+.++||||| .++.
T Consensus 154 sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~ 191 (276)
T 2wa2_A 154 CDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCV 191 (276)
T ss_dssp ECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEE
T ss_pred ECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEE
Confidence 9865 332221 11 1 136788889999999 8774
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.2e-11 Score=105.06 Aligned_cols=97 Identities=25% Similarity=0.256 Sum_probs=71.8
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc-CC---------CeEEEEechH-HHHHHHHHHHHcCCCCcEEEE-Eccccccc--
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKA-GA---------AHVYAVECSQ-MANMAKQIVEANGFSNVITVL-KGKIEEIE-- 184 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~-g~---------~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~-~~d~~~~~-- 184 (405)
...++.+|||||||+|.++..+++. |. .+|+|+|+|+ + .+ .+++++ .+|+....
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-~~~~~~~~~d~~~~~~~ 86 (196)
T 2nyu_A 19 ILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-EGATFLCPADVTDPRTS 86 (196)
T ss_dssp CCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-TTCEEECSCCTTSHHHH
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-CCCeEEEeccCCCHHHH
Confidence 3567899999999999999999995 54 6999999999 3 12 347888 88876643
Q ss_pred ------CCCCceeEEEEccccccccCh-hhH-------HHHHHHHHhcccCCcEEEe
Q 015534 185 ------LPVTKVDIIISEWMGYFLLFE-NML-------NTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 185 ------~~~~~~D~Iv~~~~~~~l~~~-~~~-------~~~l~~~~~~LkpgG~lip 227 (405)
++.++||+|+++...+...+. .+. ..++..+.++|||||.++.
T Consensus 87 ~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~ 143 (196)
T 2nyu_A 87 QRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLC 143 (196)
T ss_dssp HHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 233689999996532222111 111 4778889999999999885
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.20 E-value=2.9e-11 Score=106.23 Aligned_cols=97 Identities=18% Similarity=0.259 Sum_probs=71.9
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCC-----------
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELP----------- 186 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~----------- 186 (405)
....++.+|||+|||+|.++..+++. ..+|+|+|++++. .+ .+++++++|+.+....
T Consensus 21 ~~~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~----------~~-~~v~~~~~D~~~~~~~~~~~~~~~~~~ 88 (191)
T 3dou_A 21 RVVRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME----------EI-AGVRFIRCDIFKETIFDDIDRALREEG 88 (191)
T ss_dssp CCSCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC----------CC-TTCEEEECCTTSSSHHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc----------cC-CCeEEEEccccCHHHHHHHHHHhhccc
Confidence 34567899999999999999999998 5599999999821 12 3589999999875421
Q ss_pred CCceeEEEEccccccccC--------hhhHHHHHHHHHhcccCCcEEE
Q 015534 187 VTKVDIIISEWMGYFLLF--------ENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~--------~~~~~~~l~~~~~~LkpgG~li 226 (405)
.++||+|++++....... ......++..+.++|||||.++
T Consensus 89 ~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv 136 (191)
T 3dou_A 89 IEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVL 136 (191)
T ss_dssp CSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred CCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEE
Confidence 148999999753221111 1123467778889999999988
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.20 E-value=4.2e-11 Score=118.49 Aligned_cols=110 Identities=16% Similarity=0.061 Sum_probs=86.6
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEE
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIII 194 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv 194 (405)
...++.+|||+|||+|..+..+++.+ ..+|+|+|+++ +++.+++++..+++. ++++++|+.++. ++.++||+|+
T Consensus 243 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~Vl 320 (429)
T 1sqg_A 243 APQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDGRYPSQWCGEQQFDRIL 320 (429)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC--CEEEECCTTCTHHHHTTCCEEEEE
T ss_pred CCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCC--eEEEeCchhhchhhcccCCCCEEE
Confidence 45788999999999999999999954 36999999999 999999999999873 789999998775 4447899999
Q ss_pred Ecccccc---ccChhh----------------HHHHHHHHHhcccCCcEEEecCc
Q 015534 195 SEWMGYF---LLFENM----------------LNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 195 ~~~~~~~---l~~~~~----------------~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
+++.... +.+.+. ...++..+.++|||||+++.+++
T Consensus 321 ~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystc 375 (429)
T 1sqg_A 321 LDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 375 (429)
T ss_dssp EECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred EeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 8642111 111111 14778889999999999986543
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=9.8e-11 Score=115.90 Aligned_cols=112 Identities=21% Similarity=0.129 Sum_probs=85.1
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc--
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-- 183 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-- 183 (405)
++.+.+.+.......++.+|||+|||+|.+++.+++. ..+|+|+|+|+ +++.|++++..+++. +++|+.+|+.+.
T Consensus 271 ~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~d~~~~l~ 348 (433)
T 1uwv_A 271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVT 348 (433)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCCS
T ss_pred HHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHhh
Confidence 4445555554455567889999999999999999998 56999999999 999999999999986 699999999873
Q ss_pred --cCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 184 --ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 184 --~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+++.++||+|++++.-..+ ..++..+.+ ++|+++++.
T Consensus 349 ~~~~~~~~fD~Vv~dPPr~g~------~~~~~~l~~-~~p~~ivyv 387 (433)
T 1uwv_A 349 KQPWAKNGFDKVLLDPARAGA------AGVMQQIIK-LEPIRIVYV 387 (433)
T ss_dssp SSGGGTTCCSEEEECCCTTCC------HHHHHHHHH-HCCSEEEEE
T ss_pred hhhhhcCCCCEEEECCCCccH------HHHHHHHHh-cCCCeEEEE
Confidence 2334689999998752211 134444433 688887664
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.8e-11 Score=116.42 Aligned_cols=109 Identities=16% Similarity=0.152 Sum_probs=81.0
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (405)
+.......++.+|||||||+|.++..+++. +..+++++|+++++. +++....++.++++++.+|+. .+++ +||+
T Consensus 176 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~--~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~ 250 (348)
T 3lst_A 176 LARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVA--RHRLDAPDVAGRWKVVEGDFL-REVP--HADV 250 (348)
T ss_dssp HHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHT--TCCCCCGGGTTSEEEEECCTT-TCCC--CCSE
T ss_pred HHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhh--cccccccCCCCCeEEEecCCC-CCCC--CCcE
Confidence 333445567889999999999999999884 455899999966444 333444456678999999997 3344 8999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
|++..+.+.. .......+++++.++|||||+++..
T Consensus 251 v~~~~vlh~~-~d~~~~~~L~~~~~~LkpgG~l~i~ 285 (348)
T 3lst_A 251 HVLKRILHNW-GDEDSVRILTNCRRVMPAHGRVLVI 285 (348)
T ss_dssp EEEESCGGGS-CHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred EEEehhccCC-CHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9996654333 2233368999999999999999854
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.3e-11 Score=117.99 Aligned_cols=100 Identities=13% Similarity=0.010 Sum_probs=83.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHcCCCCc-EEEEEcccccccC--CCCceeEEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNV-ITVLKGKIEEIEL--PVTKVDIII 194 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~-i~~~~~d~~~~~~--~~~~~D~Iv 194 (405)
.++.+|||++||+|.+++.++.. |+.+|+++|+++ +++.++++++.|++.++ ++++++|+.++.. ..++||+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 46789999999999999999984 667999999999 99999999999999877 9999999977532 136899999
Q ss_pred EccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+++.+ ....++..+.++|+|||+++.
T Consensus 131 lDP~g-------~~~~~l~~a~~~Lk~gGll~~ 156 (392)
T 3axs_A 131 LDPFG-------TPVPFIESVALSMKRGGILSL 156 (392)
T ss_dssp ECCSS-------CCHHHHHHHHHHEEEEEEEEE
T ss_pred ECCCc-------CHHHHHHHHHHHhCCCCEEEE
Confidence 98731 123577777888999998764
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.19 E-value=4e-12 Score=117.41 Aligned_cols=105 Identities=18% Similarity=0.224 Sum_probs=73.3
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHHHHHHHHH-HHcCCCCcEEEE--EcccccccCCCCceeEEE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIV-EANGFSNVITVL--KGKIEEIELPVTKVDIII 194 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~-~~~~~~~~i~~~--~~d~~~~~~~~~~~D~Iv 194 (405)
....++.+|||||||+|.++..+++. .+|+|||+++|+..+++.. .......+++++ ++|+.+++ +++||+|+
T Consensus 70 ~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~ 145 (265)
T 2oxt_A 70 GYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIM 145 (265)
T ss_dssp TSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEE
T ss_pred CCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEE
Confidence 44567889999999999999999998 5999999999422222110 000111158889 89998875 47999999
Q ss_pred EccccccccCh-hhHH---HHHHHHHhcccCCc--EEEe
Q 015534 195 SEWMGYFLLFE-NMLN---TVLYARDKWLVDDG--IVLP 227 (405)
Q Consensus 195 ~~~~~~~l~~~-~~~~---~~l~~~~~~LkpgG--~lip 227 (405)
|+.. +...+. .+.. .++..+.++||||| .++.
T Consensus 146 sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~ 183 (265)
T 2oxt_A 146 CDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVV 183 (265)
T ss_dssp ECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred EeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEE
Confidence 9865 332221 1111 36788889999999 8774
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.6e-11 Score=113.28 Aligned_cols=94 Identities=17% Similarity=0.042 Sum_probs=76.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHH--cCC-CCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA--NGF-SNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~--~~~-~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
.+.+|||||||+|.++..+++.+ .+|+++|+++ +++.|++++.. .++ .++++++.+|..++. ++||+|+++.
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d~ 147 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCLQ 147 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEESS
T ss_pred CCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEECC
Confidence 55799999999999999998886 8999999999 99999887532 112 257999999998764 7899999863
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
. ++..++..+.+.|+|||+++.
T Consensus 148 ~--------dp~~~~~~~~~~L~pgG~lv~ 169 (262)
T 2cmg_A 148 E--------PDIHRIDGLKRMLKEDGVFIS 169 (262)
T ss_dssp C--------CCHHHHHHHHTTEEEEEEEEE
T ss_pred C--------ChHHHHHHHHHhcCCCcEEEE
Confidence 2 122488899999999999985
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.9e-10 Score=104.96 Aligned_cols=83 Identities=18% Similarity=0.281 Sum_probs=67.0
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC-
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV- 187 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~- 187 (405)
+.+.+.......++.+|||||||+|.++..+++.+ .+|+|+|+++ +++.|++++... ++++++++|+.+++++.
T Consensus 18 ~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~~~~~~~~ 93 (244)
T 1qam_A 18 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFPKN 93 (244)
T ss_dssp HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCCSS
T ss_pred HHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccC---CCeEEEEChHHhCCcccC
Confidence 44455555666788999999999999999999986 5999999999 999999887542 46999999999987763
Q ss_pred CceeEEEEcc
Q 015534 188 TKVDIIISEW 197 (405)
Q Consensus 188 ~~~D~Iv~~~ 197 (405)
..| .|++++
T Consensus 94 ~~~-~vv~nl 102 (244)
T 1qam_A 94 QSY-KIFGNI 102 (244)
T ss_dssp CCC-EEEEEC
T ss_pred CCe-EEEEeC
Confidence 345 566665
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.6e-11 Score=114.25 Aligned_cols=103 Identities=17% Similarity=0.256 Sum_probs=71.9
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEec----hH-HHHHHHHHHHHcCCCCcEEEEEc-ccccccCCCCcee
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVEC----SQ-MANMAKQIVEANGFSNVITVLKG-KIEEIELPVTKVD 191 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~----s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~D 191 (405)
....++.+|||||||+|.++..+++. .+|+|+|+ ++ +++.+. ....+. ++++++.+ |+..++ .++||
T Consensus 78 ~~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~~-~~v~~~~~~D~~~l~--~~~fD 150 (305)
T 2p41_A 78 NLVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYGW-NLVRLQSGVDVFFIP--PERCD 150 (305)
T ss_dssp TSSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTTG-GGEEEECSCCTTTSC--CCCCS
T ss_pred CCCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcCC-CCeEEEeccccccCC--cCCCC
Confidence 34567889999999999999999998 48999999 55 443211 111111 46999999 887764 47899
Q ss_pred EEEEccccccccChhhH---HHHHHHHHhcccCCcEEEe
Q 015534 192 IIISEWMGYFLLFENML---NTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~---~~~l~~~~~~LkpgG~lip 227 (405)
+|+|++.........+. ..++..+.++|||||.++.
T Consensus 151 ~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~ 189 (305)
T 2p41_A 151 TLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCV 189 (305)
T ss_dssp EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred EEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence 99997653311111111 1467778899999998875
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.8e-10 Score=107.60 Aligned_cols=85 Identities=27% Similarity=0.422 Sum_probs=71.2
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (405)
+.+.|.......++.+|||||||+|.++..+++.+ .+|+|+|+++ +++.|++++... ++++++++|+.+++++..
T Consensus 38 i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li~~a~~~~~~~---~~v~vi~gD~l~~~~~~~ 113 (295)
T 3gru_A 38 FVNKAVESANLTKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLEPYANKLKELY---NNIEIIWGDALKVDLNKL 113 (295)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGHHHHHHHHHHC---SSEEEEESCTTTSCGGGS
T ss_pred HHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhccC---CCeEEEECchhhCCcccC
Confidence 34444444566788999999999999999999984 5999999999 999999998742 469999999999887756
Q ss_pred ceeEEEEccc
Q 015534 189 KVDIIISEWM 198 (405)
Q Consensus 189 ~~D~Iv~~~~ 198 (405)
+||+|++++.
T Consensus 114 ~fD~Iv~NlP 123 (295)
T 3gru_A 114 DFNKVVANLP 123 (295)
T ss_dssp CCSEEEEECC
T ss_pred CccEEEEeCc
Confidence 7999999864
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=8.4e-11 Score=113.97 Aligned_cols=98 Identities=21% Similarity=0.158 Sum_probs=81.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHc---------------CCCCcEEEEEccccccc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEAN---------------GFSNVITVLKGKIEEIE 184 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~---------------~~~~~i~~~~~d~~~~~ 184 (405)
++.+|||+|||+|.+++.+++. |..+|+++|+++ +++.|+++++.+ ++.+ ++++++|+..+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~-i~v~~~Da~~~~ 125 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKT-IVINHDDANRLM 125 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSE-EEEEESCHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCc-eEEEcCcHHHHH
Confidence 6789999999999999999995 677899999999 999999999999 8754 999999998763
Q ss_pred CC-CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 185 LP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 185 ~~-~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.. .++||+|+.++.+ ....++..+.+.|+|||+++.
T Consensus 126 ~~~~~~fD~I~lDP~~-------~~~~~l~~a~~~lk~gG~l~v 162 (378)
T 2dul_A 126 AERHRYFHFIDLDPFG-------SPMEFLDTALRSAKRRGILGV 162 (378)
T ss_dssp HHSTTCEEEEEECCSS-------CCHHHHHHHHHHEEEEEEEEE
T ss_pred HhccCCCCEEEeCCCC-------CHHHHHHHHHHhcCCCCEEEE
Confidence 21 2589999987642 124677777889999998764
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.4e-10 Score=110.74 Aligned_cols=98 Identities=18% Similarity=0.226 Sum_probs=77.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
..++.+|||||||+|.++..+++ .+..+++++|+ + +++.|++. ++++++.+|+.+ +++. . |+|++..
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~p~-~-D~v~~~~ 269 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFD-GVPK-G-DAIFIKW 269 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CCCC-C-SEEEEES
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCC-CCCC-C-CEEEEec
Confidence 45678999999999999999998 45569999999 7 88877642 469999999987 5663 3 9999866
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+.+.. .......+++++.+.|+|||+++...
T Consensus 270 vlh~~-~~~~~~~~l~~~~~~L~pgG~l~i~e 300 (368)
T 3reo_A 270 ICHDW-SDEHCLKLLKNCYAALPDHGKVIVAE 300 (368)
T ss_dssp CGGGB-CHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhhcC-CHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 54433 33455688999999999999988643
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=6.2e-11 Score=105.66 Aligned_cols=85 Identities=18% Similarity=0.155 Sum_probs=70.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (405)
.++.+|||||||+|.++..++ .+|+|+|+|+. +++++.+|+.+++++.++||+|++..+
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~---------------~~~~~~~d~~~~~~~~~~fD~v~~~~~-- 124 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASL---------------DPRVTVCDMAQVPLEDESVDVAVFCLS-- 124 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS---------------STTEEESCTTSCSCCTTCEEEEEEESC--
T ss_pred CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC---------------CceEEEeccccCCCCCCCEeEEEEehh--
Confidence 567899999999999987772 59999999983 367889999998877789999999654
Q ss_pred cccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 201 FLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+++ ..+..++..+.++|+|||.++..
T Consensus 125 -l~~-~~~~~~l~~~~~~L~~gG~l~i~ 150 (215)
T 2zfu_A 125 -LMG-TNIRDFLEEANRVLKPGGLLKVA 150 (215)
T ss_dssp -CCS-SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred -ccc-cCHHHHHHHHHHhCCCCeEEEEE
Confidence 323 57788999999999999998854
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=3e-10 Score=109.88 Aligned_cols=98 Identities=20% Similarity=0.184 Sum_probs=77.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
..+..+|||||||+|.++..+++ .+..+++++|+ + +++.|++. ++++++.+|+.+ +++.+ |+|++..
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~--D~v~~~~ 267 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-------PGVTHVGGDMFK-EVPSG--DTILMKW 267 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CCCCC--SEEEEES
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-------CCeEEEeCCcCC-CCCCC--CEEEehH
Confidence 55678999999999999999988 45569999999 7 88877642 469999999987 66633 9999866
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+.+.. .......+++++++.|||||+++...
T Consensus 268 vlh~~-~d~~~~~~L~~~~~~L~pgG~l~i~e 298 (364)
T 3p9c_A 268 ILHDW-SDQHCATLLKNCYDALPAHGKVVLVQ 298 (364)
T ss_dssp CGGGS-CHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred HhccC-CHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 54333 33456789999999999999988643
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.1e-10 Score=111.33 Aligned_cols=98 Identities=16% Similarity=0.101 Sum_probs=76.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
..++.+|||||||+|.++..+++.+ ..+++++|+ + +++.|++. .+++++.+|+.+ +++ . ||+|++..
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~-~-~D~v~~~~ 275 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL-------SGIEHVGGDMFA-SVP-Q-GDAMILKA 275 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CCC-C-EEEEEEES
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc-------CCCEEEeCCccc-CCC-C-CCEEEEec
Confidence 4567899999999999999999953 558999999 8 99877642 359999999987 565 3 99999966
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+.+.+ .......+++.+.++|+|||+++...
T Consensus 276 ~lh~~-~d~~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 276 VCHNW-SDEKCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp SGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccC-CHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 54433 12233489999999999999988643
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.6e-10 Score=109.52 Aligned_cols=104 Identities=16% Similarity=0.113 Sum_probs=80.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCC------CeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGA------AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~------~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~I 193 (405)
.++.+|||+|||+|.++..+++... .+|+|+|+++ +++.|+.++...++ ++.++++|..... +.++||+|
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~l~~~-~~~~fD~I 205 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANL-LVDPVDVV 205 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCC-CCCCEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCCCCcc-ccCCccEE
Confidence 4667999999999999999988531 5899999999 99999999988887 4889999987643 34789999
Q ss_pred EEccccccccChh--------------hH-HHHHHHHHhcccCCcEEEe
Q 015534 194 ISEWMGYFLLFEN--------------ML-NTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 194 v~~~~~~~l~~~~--------------~~-~~~l~~~~~~LkpgG~lip 227 (405)
++++......... .. ..++..+.+.|+|||+++.
T Consensus 206 i~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~ 254 (344)
T 2f8l_A 206 ISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFF 254 (344)
T ss_dssp EEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEE
T ss_pred EECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEE
Confidence 9987532221111 11 2578888899999998764
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.2e-10 Score=110.98 Aligned_cols=107 Identities=17% Similarity=0.097 Sum_probs=78.3
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--C
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L 185 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~ 185 (405)
.+...+...... .+.+|||+|||+|.+++.+++. +.+|+|+|+|+ +++.|++++..+++. +++++.+|+.++. +
T Consensus 201 ~l~~~~~~~~~~-~~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~-~v~~~~~d~~~~~~~~ 277 (369)
T 3bt7_A 201 QMLEWALDVTKG-SKGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHID-NVQIIRMAAEEFTQAM 277 (369)
T ss_dssp HHHHHHHHHTTT-CCSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCC-SEEEECCCSHHHHHHH
T ss_pred HHHHHHHHHhhc-CCCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHHHHH
Confidence 334444433332 3578999999999999999885 56999999999 999999999999984 6999999998753 1
Q ss_pred CC--------------CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 186 PV--------------TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 186 ~~--------------~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.. .+||+|+.++.-..+ ...+.+.|+++|.++.
T Consensus 278 ~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~---------~~~~~~~l~~~g~ivy 324 (369)
T 3bt7_A 278 NGVREFNRLQGIDLKSYQCETIFVDPPRSGL---------DSETEKMVQAYPRILY 324 (369)
T ss_dssp SSCCCCTTGGGSCGGGCCEEEEEECCCTTCC---------CHHHHHHHTTSSEEEE
T ss_pred hhccccccccccccccCCCCEEEECcCcccc---------HHHHHHHHhCCCEEEE
Confidence 11 279999998642211 1223355668888763
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.09 E-value=8.7e-10 Score=103.91 Aligned_cols=111 Identities=11% Similarity=0.003 Sum_probs=82.7
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC---CceeE
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV---TKVDI 192 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~---~~~D~ 192 (405)
...++.+|||+|||+|..+..+++. +..+|+|+|+++ +++.++++++++|+. +++++++|+.++.... .+||.
T Consensus 99 ~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~~fD~ 177 (309)
T 2b9e_A 99 DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSDPRYHEVHY 177 (309)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTCGGGTTEEE
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCChHhcCccccccCCCCE
Confidence 4578899999999999999999983 457999999999 999999999999984 5999999998875321 47999
Q ss_pred EEEccccc--cc--cC----------hhh-------HHHHHHHHHhcccCCcEEEecCce
Q 015534 193 IISEWMGY--FL--LF----------ENM-------LNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 193 Iv~~~~~~--~l--~~----------~~~-------~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
|++++... .. .+ ... ...++..+.++|+ ||+++.++++
T Consensus 178 Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs 236 (309)
T 2b9e_A 178 ILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS 236 (309)
T ss_dssp EEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred EEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence 99864211 11 10 011 1246677777786 9988855433
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=3.5e-10 Score=111.46 Aligned_cols=98 Identities=13% Similarity=0.029 Sum_probs=74.6
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (405)
...++.+|||+|||+|.++..+++. +..+|+|+|+++ +++.| .+++++++|+.+.... ++||+|++
T Consensus 36 ~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~~~~~~-~~fD~Ii~ 104 (421)
T 2ih2_A 36 EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLLWEPG-EAFDLILG 104 (421)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGGCCCS-SCEEEEEE
T ss_pred ccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChhhcCcc-CCCCEEEE
Confidence 3345679999999999999999984 456999999999 98877 3589999999887543 78999999
Q ss_pred ccccccccC---------hh-----------------hHHHHHHHHHhcccCCcEEEe
Q 015534 196 EWMGYFLLF---------EN-----------------MLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 196 ~~~~~~l~~---------~~-----------------~~~~~l~~~~~~LkpgG~lip 227 (405)
++....... .. ....++..+.++|+|||.++.
T Consensus 105 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~ 162 (421)
T 2ih2_A 105 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVF 162 (421)
T ss_dssp CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEE
T ss_pred CcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEE
Confidence 864221111 11 112567888899999998764
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.5e-11 Score=112.44 Aligned_cols=104 Identities=18% Similarity=0.247 Sum_probs=78.2
Q ss_pred ccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC-CceeEEE
Q 015534 117 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV-TKVDIII 194 (405)
Q Consensus 117 ~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~Iv 194 (405)
.....++.+|||||||+|.++..+++.+ .+|+|+|+++ +++.|++++. . .++++++++|+.+++++. ++| .|+
T Consensus 24 ~~~~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~--~-~~~v~~~~~D~~~~~~~~~~~f-~vv 98 (245)
T 1yub_A 24 QLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLK--L-NTRVTLIHQDILQFQFPNKQRY-KIV 98 (245)
T ss_dssp HCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTT--T-CSEEEECCSCCTTTTCCCSSEE-EEE
T ss_pred hcCCCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhc--c-CCceEEEECChhhcCcccCCCc-EEE
Confidence 3455678899999999999999999986 6999999999 9999987765 1 257999999999987663 688 777
Q ss_pred EccccccccChhhHHHHH--------------HHHHhcccCCcEEEe
Q 015534 195 SEWMGYFLLFENMLNTVL--------------YARDKWLVDDGIVLP 227 (405)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l--------------~~~~~~LkpgG~lip 227 (405)
+++. +... ...+..++ ..+.++|+|||.+..
T Consensus 99 ~n~P-y~~~-~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v 143 (245)
T 1yub_A 99 GNIP-YHLS-TQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGL 143 (245)
T ss_dssp EECC-SSSC-HHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHH
T ss_pred EeCC-cccc-HHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhh
Confidence 7753 3221 22222322 457788999987653
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-09 Score=104.76 Aligned_cols=113 Identities=16% Similarity=0.094 Sum_probs=85.9
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015534 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (405)
Q Consensus 112 ~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (405)
..+.......+..+|||||||+|.++..+++ .+..+++..|..++++.|++++...+ .++|+++.+|+.+.+. ..+
T Consensus 169 ~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~~--~~~ 245 (353)
T 4a6d_A 169 RSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQE-EEQIDFQEGDFFKDPL--PEA 245 (353)
T ss_dssp HHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC---CCSEEEEESCTTTSCC--CCC
T ss_pred HHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcc-cCceeeecCccccCCC--CCc
Confidence 3444445556678999999999999999998 55668889998449999998876544 5789999999987644 468
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
|++++..+.+.. ..+....+++.+.+.|+|||+++..
T Consensus 246 D~~~~~~vlh~~-~d~~~~~iL~~~~~al~pgg~lli~ 282 (353)
T 4a6d_A 246 DLYILARVLHDW-ADGKCSHLLERIYHTCKPGGGILVI 282 (353)
T ss_dssp SEEEEESSGGGS-CHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred eEEEeeeecccC-CHHHHHHHHHHHHhhCCCCCEEEEE
Confidence 999986554432 2344568899999999999998754
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-10 Score=100.85 Aligned_cols=88 Identities=15% Similarity=0.050 Sum_probs=71.5
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC---CCCceeEE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---PVTKVDII 193 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~D~I 193 (405)
....+|.+|||||||. +++|+|+ |++.|+++... +++++.+|+.++++ ++++||+|
T Consensus 8 ~g~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~-----~~~~~~~d~~~~~~~~~~~~~fD~V 67 (176)
T 2ld4_A 8 FGISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN-----EGRVSVENIKQLLQSAHKESSFDII 67 (176)
T ss_dssp TTCCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT-----TSEEEEEEGGGGGGGCCCSSCEEEE
T ss_pred cCCCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc-----CcEEEEechhcCccccCCCCCEeEE
Confidence 3567899999999996 2399999 99999987532 38999999999876 67899999
Q ss_pred EEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
++..+.+++ ..+...++.+++++|||||+++.
T Consensus 68 ~~~~~l~~~--~~~~~~~l~~~~r~LkpgG~l~~ 99 (176)
T 2ld4_A 68 LSGLVPGST--TLHSAEILAEIARILRPGGCLFL 99 (176)
T ss_dssp EECCSTTCC--CCCCHHHHHHHHHHEEEEEEEEE
T ss_pred EECChhhhc--ccCHHHHHHHHHHHCCCCEEEEE
Confidence 996543333 14557899999999999999987
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=8.5e-10 Score=101.90 Aligned_cols=93 Identities=17% Similarity=0.235 Sum_probs=71.3
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC-Cce
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV-TKV 190 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~ 190 (405)
.|.......++ +|||||||+|.++..+++.+ .+|+|+|+++ |++.+++++.. .+++++++|+.+++++. ..+
T Consensus 38 ~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~~----~~v~vi~~D~l~~~~~~~~~~ 111 (271)
T 3fut_A 38 RIVEAARPFTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLSG----LPVRLVFQDALLYPWEEVPQG 111 (271)
T ss_dssp HHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTTT----SSEEEEESCGGGSCGGGSCTT
T ss_pred HHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcCC----CCEEEEECChhhCChhhccCc
Confidence 33333456678 99999999999999999986 5999999999 99999988752 46999999999987653 268
Q ss_pred eEEEEccccccccChhhHHHHHH
Q 015534 191 DIIISEWMGYFLLFENMLNTVLY 213 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~ 213 (405)
|.|++++. |.+ ..+.+..++.
T Consensus 112 ~~iv~NlP-y~i-ss~il~~ll~ 132 (271)
T 3fut_A 112 SLLVANLP-YHI-ATPLVTRLLK 132 (271)
T ss_dssp EEEEEEEC-SSC-CHHHHHHHHH
T ss_pred cEEEecCc-ccc-cHHHHHHHhc
Confidence 99999864 333 2334444443
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.02 E-value=5.1e-10 Score=102.61 Aligned_cols=81 Identities=12% Similarity=0.234 Sum_probs=66.3
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC----C
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP----V 187 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~----~ 187 (405)
.|.......++.+|||||||+|.++..+++.+ .+|+|+|+++ |++.+++++.. .++++++++|+.+++++ .
T Consensus 20 ~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~~~~~ 95 (255)
T 3tqs_A 20 KIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDALQFDFSSVKTD 95 (255)
T ss_dssp HHHHHHCCCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT---CTTEEEEESCTTTCCGGGSCCS
T ss_pred HHHHhcCCCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh---CCCcEEEEcchHhCCHHHhccC
Confidence 34444556788999999999999999999986 5999999999 99999998865 25699999999988754 2
Q ss_pred CceeEEEEccc
Q 015534 188 TKVDIIISEWM 198 (405)
Q Consensus 188 ~~~D~Iv~~~~ 198 (405)
++|| |++++.
T Consensus 96 ~~~~-vv~NlP 105 (255)
T 3tqs_A 96 KPLR-VVGNLP 105 (255)
T ss_dssp SCEE-EEEECC
T ss_pred CCeE-EEecCC
Confidence 5688 777753
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=4.7e-10 Score=108.01 Aligned_cols=98 Identities=14% Similarity=0.167 Sum_probs=76.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
..++.+|||||||+|.++..+++. +..+++++|+ + +++.|++. .+++++.+|+.+ +++ .||+|++..
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~p--~~D~v~~~~ 254 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS-------NNLTYVGGDMFT-SIP--NADAVLLKY 254 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB-------TTEEEEECCTTT-CCC--CCSEEEEES
T ss_pred cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC-------CCcEEEeccccC-CCC--CccEEEeeh
Confidence 446689999999999999999985 4559999999 8 99887651 249999999976 555 399999966
Q ss_pred ccccccChhhHHHHHHHHHhcccC---CcEEEecC
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVD---DGIVLPDK 229 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~Lkp---gG~lip~~ 229 (405)
+.+.+ .......+++.+.++||| ||+++...
T Consensus 255 ~lh~~-~d~~~~~~l~~~~~~L~p~~~gG~l~i~e 288 (352)
T 1fp2_A 255 ILHNW-TDKDCLRILKKCKEAVTNDGKRGKVTIID 288 (352)
T ss_dssp CGGGS-CHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred hhccC-CHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 54433 122334899999999999 99988643
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.01 E-value=4.8e-10 Score=111.40 Aligned_cols=117 Identities=16% Similarity=0.016 Sum_probs=86.9
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc--------------CCCeEEEEechH-HHHHHHHHHHHcCCCC-cE
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--------------GAAHVYAVECSQ-MANMAKQIVEANGFSN-VI 173 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~--------------g~~~V~~vD~s~-~~~~a~~~~~~~~~~~-~i 173 (405)
..+.+.......++.+|||.|||+|.++..+++. ...+++|+|+++ +++.|+.++...++.. .+
T Consensus 159 v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~ 238 (445)
T 2okc_A 159 LIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS 238 (445)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred HHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCC
Confidence 3344444445567789999999999999888873 235899999999 9999999999888752 57
Q ss_pred EEEEcccccccCCCCceeEEEEccccccccCh--------------hhHHHHHHHHHhcccCCcEEEe
Q 015534 174 TVLKGKIEEIELPVTKVDIIISEWMGYFLLFE--------------NMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 174 ~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~--------------~~~~~~l~~~~~~LkpgG~lip 227 (405)
.++++|....+.. .+||+|++++........ .....++..+.++|+|||++..
T Consensus 239 ~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~ 305 (445)
T 2okc_A 239 PIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAV 305 (445)
T ss_dssp SEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred CEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEE
Confidence 8899998776544 589999999743221110 0113678888899999998763
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.6e-09 Score=100.80 Aligned_cols=103 Identities=15% Similarity=0.097 Sum_probs=72.9
Q ss_pred HHHHHHH-hccCCCCCCEEEEEcCCC------cHHHHHHHH-cC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEE-EEc
Q 015534 109 SYQNVIY-QNKFLFKDKVVLDVGAGT------GILSLFCAK-AG-AAHVYAVECSQMANMAKQIVEANGFSNVITV-LKG 178 (405)
Q Consensus 109 ~~~~~i~-~~~~~~~~~~VLDiGcG~------G~l~~~la~-~g-~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~-~~~ 178 (405)
.+...+. ......++.+|||||||+ |. ..+++ .+ ..+|+|+|+|+. + .++++ +++
T Consensus 49 ~l~~~l~~~~l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~------------v-~~v~~~i~g 113 (290)
T 2xyq_A 49 QLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF------------V-SDADSTLIG 113 (290)
T ss_dssp HHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC------------B-CSSSEEEES
T ss_pred HHHHHHHHhhcCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC------------C-CCCEEEEEC
Confidence 3444442 234567889999999944 66 33444 55 369999999994 1 24788 999
Q ss_pred ccccccCCCCceeEEEEcccccc--------ccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 179 KIEEIELPVTKVDIIISEWMGYF--------LLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 179 d~~~~~~~~~~~D~Iv~~~~~~~--------l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+.+++++ ++||+|++++.... .........++..+.++|||||.++.
T Consensus 114 D~~~~~~~-~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~ 169 (290)
T 2xyq_A 114 DCATVHTA-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAV 169 (290)
T ss_dssp CGGGCCCS-SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccCCcc-CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 99988765 78999999753211 11123456889999999999999985
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.95 E-value=7.8e-09 Score=90.75 Aligned_cols=98 Identities=19% Similarity=0.189 Sum_probs=76.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCC--CCcEEEEEcccccc---------------
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF--SNVITVLKGKIEEI--------------- 183 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~--~~~i~~~~~d~~~~--------------- 183 (405)
+.++|||+||| ..++.+|+....+|++||.++ .++.|++++++.|+ .++|+++.+|+.+.
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l 107 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY 107 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence 56799999984 688888885356999999999 99999999999998 78999999996542
Q ss_pred c--------C-CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 184 E--------L-PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 184 ~--------~-~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+ . ..++||+|+.+.- .. ..++..+.++|+|||+|+...
T Consensus 108 ~~~~~~i~~~~~~~~fDlIfIDg~-------k~-~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 108 PDYPLAVWRTEGFRHPDVVLVDGR-------FR-VGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp THHHHGGGGCTTCCCCSEEEECSS-------SH-HHHHHHHHHHCSSCEEEEETT
T ss_pred HHHhhhhhccccCCCCCEEEEeCC-------Cc-hhHHHHHHHhcCCCeEEEEeC
Confidence 1 1 1368999998641 11 244455568999999998655
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=3.9e-09 Score=110.26 Aligned_cols=119 Identities=15% Similarity=0.098 Sum_probs=89.0
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-------------------------------------------
Q 015534 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG------------------------------------------- 144 (405)
Q Consensus 108 ~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g------------------------------------------- 144 (405)
+.+..++.......++.+|||.+||+|.+++.++..+
T Consensus 176 e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~ 255 (703)
T 3v97_A 176 ETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEY 255 (703)
T ss_dssp HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccC
Confidence 3456666666666788899999999999999888742
Q ss_pred CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC--CCceeEEEEcccc-ccccChhhHHHHHHHHHhc--
Q 015534 145 AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--VTKVDIIISEWMG-YFLLFENMLNTVLYARDKW-- 218 (405)
Q Consensus 145 ~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~D~Iv~~~~~-~~l~~~~~~~~~l~~~~~~-- 218 (405)
..+|+|+|+++ +++.|++++..+|+.+.++|.++|+.++..+ .++||+|++++.. .-+.....+..+...+.+.
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk 335 (703)
T 3v97_A 256 SSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMK 335 (703)
T ss_dssp CCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHH
T ss_pred CccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHH
Confidence 14799999999 9999999999999988899999999988543 2389999999742 1222233455555555444
Q ss_pred -ccCCcEEE
Q 015534 219 -LVDDGIVL 226 (405)
Q Consensus 219 -LkpgG~li 226 (405)
+.|||.+.
T Consensus 336 ~~~~g~~~~ 344 (703)
T 3v97_A 336 NQFGGWNLS 344 (703)
T ss_dssp HHCTTCEEE
T ss_pred hhCCCCeEE
Confidence 45798765
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.5e-09 Score=105.53 Aligned_cols=75 Identities=19% Similarity=0.177 Sum_probs=65.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc--CCCCcEEEEEcccccc-cC-CCCceeEEEEc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN--GFSNVITVLKGKIEEI-EL-PVTKVDIIISE 196 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~--~~~~~i~~~~~d~~~~-~~-~~~~~D~Iv~~ 196 (405)
+|.+|||+|||+|..++.+++.+. +|+++|+|+ +++.|++++..+ |+ ++++++++|+.+. .. +.++||+|+++
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCCEEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 488999999999999999998865 999999999 999999999988 88 6799999999875 21 22589999998
Q ss_pred cc
Q 015534 197 WM 198 (405)
Q Consensus 197 ~~ 198 (405)
+.
T Consensus 171 PP 172 (410)
T 3ll7_A 171 PA 172 (410)
T ss_dssp CE
T ss_pred CC
Confidence 64
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=3.5e-09 Score=102.11 Aligned_cols=98 Identities=15% Similarity=0.201 Sum_probs=75.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
.++.+|||||||+|.++..+++. +..+++++|++.+++.|++ . .+++++.+|+.+ +++ .||+|++..+.
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~-~~v~~~~~d~~~-~~~--~~D~v~~~~vl 261 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG------N-ENLNFVGGDMFK-SIP--SADAVLLKWVL 261 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCC------C-SSEEEEECCTTT-CCC--CCSEEEEESCG
T ss_pred cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhccc------C-CCcEEEeCccCC-CCC--CceEEEEcccc
Confidence 45679999999999999999985 4458999999338877664 2 349999999987 555 49999997654
Q ss_pred ccccChhhHHHHHHHHHhcccC---CcEEEecC
Q 015534 200 YFLLFENMLNTVLYARDKWLVD---DGIVLPDK 229 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~Lkp---gG~lip~~ 229 (405)
+.. .......+++.+.+.|+| ||+++...
T Consensus 262 h~~-~d~~~~~~l~~~~~~L~p~~~gG~l~i~e 293 (358)
T 1zg3_A 262 HDW-NDEQSLKILKNSKEAISHKGKDGKVIIID 293 (358)
T ss_dssp GGS-CHHHHHHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred cCC-CHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 433 122344899999999999 99988643
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.2e-09 Score=100.59 Aligned_cols=77 Identities=18% Similarity=0.278 Sum_probs=65.6
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CC---CCcee
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LP---VTKVD 191 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~---~~~~D 191 (405)
...++.+|||+|||+|..+..+++. +..+|+|+|.|+ |++.|++++..++ ++++++++|+.+++ +. ..+||
T Consensus 23 ~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~~~g~~~~D 100 (301)
T 1m6y_A 23 KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTLGIEKVD 100 (301)
T ss_dssp CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHTTCSCEE
T ss_pred CCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHHHHhcCCCCCC
Confidence 4567889999999999999999996 356999999999 9999999998877 57999999998874 11 15799
Q ss_pred EEEEcc
Q 015534 192 IIISEW 197 (405)
Q Consensus 192 ~Iv~~~ 197 (405)
.|++++
T Consensus 101 ~Vl~D~ 106 (301)
T 1m6y_A 101 GILMDL 106 (301)
T ss_dssp EEEEEC
T ss_pred EEEEcC
Confidence 999865
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.86 E-value=8.6e-10 Score=101.31 Aligned_cols=79 Identities=27% Similarity=0.145 Sum_probs=63.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-H-------HHHHHHHHHHcCCCCcEEEEEccccccc--CCC--
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-M-------ANMAKQIVEANGFSNVITVLKGKIEEIE--LPV-- 187 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~-------~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~-- 187 (405)
..++.+|||+|||+|.+++.+++.|. +|+|+|+++ + ++.|++++..+++.++++++++|+.++. +++
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~ 159 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQ 159 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccC
Confidence 44678999999999999999999865 999999998 5 4456666666666567999999998852 333
Q ss_pred CceeEEEEcccc
Q 015534 188 TKVDIIISEWMG 199 (405)
Q Consensus 188 ~~~D~Iv~~~~~ 199 (405)
++||+|+++++.
T Consensus 160 ~~fD~V~~dP~~ 171 (258)
T 2r6z_A 160 GKPDIVYLDPMY 171 (258)
T ss_dssp CCCSEEEECCCC
T ss_pred CCccEEEECCCC
Confidence 589999998753
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.84 E-value=6.1e-09 Score=96.63 Aligned_cols=81 Identities=16% Similarity=0.139 Sum_probs=63.3
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCC---eEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAA---HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~---~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (405)
.|.......++.+|||||||+|.++..+++.+.. +|+|+|+++ |++.|+++. .++++++++|+.+++++.-
T Consensus 33 ~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~~~~~~~~ 107 (279)
T 3uzu_A 33 AIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDALTFDFGSI 107 (279)
T ss_dssp HHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGGGCCGGGG
T ss_pred HHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChhcCChhHh
Confidence 3444445678899999999999999999997542 299999999 999999883 2569999999999876421
Q ss_pred ------ceeEEEEccc
Q 015534 189 ------KVDIIISEWM 198 (405)
Q Consensus 189 ------~~D~Iv~~~~ 198 (405)
..+.||+|+.
T Consensus 108 ~~~~~~~~~~vv~NlP 123 (279)
T 3uzu_A 108 ARPGDEPSLRIIGNLP 123 (279)
T ss_dssp SCSSSSCCEEEEEECC
T ss_pred cccccCCceEEEEccC
Confidence 3457888763
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.83 E-value=4.2e-09 Score=96.20 Aligned_cols=82 Identities=17% Similarity=0.277 Sum_probs=65.2
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC--
Q 015534 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV-- 187 (405)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-- 187 (405)
.+.|.......++.+|||||||+|.++..+++.|..+|+|+|+++ +++.++++ . ..+++++++|+.+++++.
T Consensus 20 ~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~---~--~~~v~~i~~D~~~~~~~~~~ 94 (249)
T 3ftd_A 20 LKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI---G--DERLEVINEDASKFPFCSLG 94 (249)
T ss_dssp HHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS---C--CTTEEEECSCTTTCCGGGSC
T ss_pred HHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc---c--CCCeEEEEcchhhCChhHcc
Confidence 344444455678899999999999999999998767999999999 99999876 1 256999999999887652
Q ss_pred CceeEEEEccc
Q 015534 188 TKVDIIISEWM 198 (405)
Q Consensus 188 ~~~D~Iv~~~~ 198 (405)
+.+ +|++++.
T Consensus 95 ~~~-~vv~NlP 104 (249)
T 3ftd_A 95 KEL-KVVGNLP 104 (249)
T ss_dssp SSE-EEEEECC
T ss_pred CCc-EEEEECc
Confidence 233 7777753
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.77 E-value=7.4e-09 Score=94.78 Aligned_cols=80 Identities=16% Similarity=0.181 Sum_probs=64.1
Q ss_pred cCCCCC--CEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc-------C-CCCcEEEEEccccccc--
Q 015534 118 KFLFKD--KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------G-FSNVITVLKGKIEEIE-- 184 (405)
Q Consensus 118 ~~~~~~--~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-------~-~~~~i~~~~~d~~~~~-- 184 (405)
....++ .+|||+|||+|..++.++..|+ +|+++|.++ +++.++++++.. + +.++++++++|..++.
T Consensus 82 l~l~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~ 160 (258)
T 2oyr_A 82 VGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD 160 (258)
T ss_dssp TTCBTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT
T ss_pred hcccCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHh
Confidence 334566 8999999999999999999877 799999999 988888776532 2 3246999999998853
Q ss_pred CCCCceeEEEEcccc
Q 015534 185 LPVTKVDIIISEWMG 199 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~ 199 (405)
++ .+||+|+++++.
T Consensus 161 ~~-~~fDvV~lDP~y 174 (258)
T 2oyr_A 161 IT-PRPQVVYLDPMF 174 (258)
T ss_dssp CS-SCCSEEEECCCC
T ss_pred Cc-ccCCEEEEcCCC
Confidence 23 579999999863
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.75 E-value=5.1e-09 Score=95.77 Aligned_cols=80 Identities=10% Similarity=0.060 Sum_probs=61.5
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCe--EEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC--
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAH--VYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV-- 187 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~--V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-- 187 (405)
.|.+.....++.+|||||||+|.++. +++ + .+ |+|+|+++ |++.+++++... ++++++++|+.+++++.
T Consensus 12 ~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~~~~~~~ 85 (252)
T 1qyr_A 12 SIVSAINPQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNFGELA 85 (252)
T ss_dssp HHHHHHCCCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCHHHHH
T ss_pred HHHHhcCCCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhCCHHHhh
Confidence 33333456678899999999999999 765 3 36 99999999 999999876542 46999999999876541
Q ss_pred ---CceeEEEEccc
Q 015534 188 ---TKVDIIISEWM 198 (405)
Q Consensus 188 ---~~~D~Iv~~~~ 198 (405)
+..|+|++++.
T Consensus 86 ~~~~~~~~vvsNlP 99 (252)
T 1qyr_A 86 EKMGQPLRVFGNLP 99 (252)
T ss_dssp HHHTSCEEEEEECC
T ss_pred cccCCceEEEECCC
Confidence 23578888864
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.71 E-value=2e-08 Score=101.89 Aligned_cols=114 Identities=13% Similarity=-0.070 Sum_probs=82.7
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHc----C---------------CCeEEEEechH-HHHHHHHHHHHcCCCC--
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA----G---------------AAHVYAVECSQ-MANMAKQIVEANGFSN-- 171 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~----g---------------~~~V~~vD~s~-~~~~a~~~~~~~~~~~-- 171 (405)
+.......++.+|||.|||+|.+...+++. + ...++|+|+++ ++++|+.++...++..
T Consensus 161 mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~ 240 (541)
T 2ar0_A 161 IIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNL 240 (541)
T ss_dssp HHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBG
T ss_pred HHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccc
Confidence 333344567789999999999998888763 1 13799999999 9999999998888753
Q ss_pred --cEEEEEccccccc-CCCCceeEEEEccccccccC-----------hhhHHHHHHHHHhcccCCcEEEe
Q 015534 172 --VITVLKGKIEEIE-LPVTKVDIIISEWMGYFLLF-----------ENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 172 --~i~~~~~d~~~~~-~~~~~~D~Iv~~~~~~~l~~-----------~~~~~~~l~~~~~~LkpgG~lip 227 (405)
++.++++|....+ .+.++||+|++++....... ...-..++..+.++|+|||++..
T Consensus 241 ~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~ 310 (541)
T 2ar0_A 241 DHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAV 310 (541)
T ss_dssp GGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEE
Confidence 2678899876543 23468999999974222111 01123678888899999998763
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.8e-08 Score=92.03 Aligned_cols=108 Identities=17% Similarity=0.206 Sum_probs=83.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHc--C-C-CCcEEEEEccccccc-CCCCceeEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEAN--G-F-SNVITVLKGKIEEIE-LPVTKVDII 193 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~--~-~-~~~i~~~~~d~~~~~-~~~~~~D~I 193 (405)
...++||-||.|.|..+..+++. +..+|+.||+++ +++.|++.+... + + ..+++++.+|...+. ...++||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 35679999999999999999995 578999999999 999999987542 1 1 268999999998865 235789999
Q ss_pred EEccccccccChh-hHHHHHHHHHhcccCCcEEEec
Q 015534 194 ISEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 194 v~~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+.+.......... .-..+++.+.+.|+|||+++.+
T Consensus 162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q 197 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQ 197 (294)
T ss_dssp EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEE
T ss_pred EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEe
Confidence 9975432211111 1246788999999999999854
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.57 E-value=6e-07 Score=82.95 Aligned_cols=119 Identities=9% Similarity=0.075 Sum_probs=87.0
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc------CCCeEEEEech--------------------------
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA------GAAHVYAVECS-------------------------- 154 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~------g~~~V~~vD~s-------------------------- 154 (405)
...+...+...........|||+|+..|..++.+++. ...+|+++|..
T Consensus 91 ~~~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~ 170 (282)
T 2wk1_A 91 LENIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVL 170 (282)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccc
Confidence 3334444433333345669999999999988887762 25689999953
Q ss_pred H-HHHHHHHHHHHcCCC-CcEEEEEccccccc--CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCc
Q 015534 155 Q-MANMAKQIVEANGFS-NVITVLKGKIEEIE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 155 ~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~--~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
+ .++.+++++++.|+. ++|+++.+++.+.. ++.++||+|+.+. + .+ ......+..+...|+|||+|+..+.
T Consensus 171 ~~~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDa-D---~y-~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 171 AVSEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDG-D---LY-ESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp CCCHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECC-C---SH-HHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred hhHHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcC-C---cc-ccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 2 467789999999984 88999999997753 3347899999753 1 11 2345678889999999999998874
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.5e-07 Score=85.47 Aligned_cols=114 Identities=17% Similarity=0.160 Sum_probs=72.4
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (405)
+.+...+ ..+.++.+|||||||+|.++..+++. ++..|+|+|++. +....... ...+. ++..+..+++...++.
T Consensus 63 L~ei~ek-~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g~--~ii~~~~~~dv~~l~~ 138 (277)
T 3evf_A 63 LRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLGW--NIITFKDKTDIHRLEP 138 (277)
T ss_dssp HHHHHHT-TSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTTG--GGEEEECSCCTTTSCC
T ss_pred HHHHHHh-CCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCCC--CeEEEeccceehhcCC
Confidence 3333343 45678889999999999999998874 677899999874 31100000 00011 3444566665555666
Q ss_pred CceeEEEEccccccccChhhH---HHHHHHHHhcccCC-cEEEe
Q 015534 188 TKVDIIISEWMGYFLLFENML---NTVLYARDKWLVDD-GIVLP 227 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~---~~~l~~~~~~Lkpg-G~lip 227 (405)
++||+|+|++..+...+.-+- -.+++.+.++|+|| |.++.
T Consensus 139 ~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~ 182 (277)
T 3evf_A 139 VKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV 182 (277)
T ss_dssp CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 899999998754411111111 13467778999999 99884
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.55 E-value=4.9e-07 Score=91.41 Aligned_cols=106 Identities=14% Similarity=0.067 Sum_probs=81.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc----CCCeEEEEechH-HHHHHHHHHHHcCCC-CcEEEEEcccccc--c-CCCCce
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKA----GAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEI--E-LPVTKV 190 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~----g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~--~-~~~~~~ 190 (405)
..++.+|||.+||+|.+...+++. +...++|+|+++ ++.+|+.++..+|+. +++.+.++|.... + .+..+|
T Consensus 219 ~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~f 298 (542)
T 3lkd_A 219 DKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNF 298 (542)
T ss_dssp TCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCB
T ss_pred CCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccc
Confidence 356789999999999988888774 346899999999 999999999999885 4689999998765 2 335789
Q ss_pred eEEEEccccccccC--h------------------hh-HHHHHHHHHhccc-CCcEEE
Q 015534 191 DIIISEWMGYFLLF--E------------------NM-LNTVLYARDKWLV-DDGIVL 226 (405)
Q Consensus 191 D~Iv~~~~~~~l~~--~------------------~~-~~~~l~~~~~~Lk-pgG~li 226 (405)
|+|++++... ... . .. --.++..+.+.|+ |||++.
T Consensus 299 D~IvaNPPf~-~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a 355 (542)
T 3lkd_A 299 DGVLMNPPYS-AKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMA 355 (542)
T ss_dssp SEEEECCCTT-CCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEE
T ss_pred cEEEecCCcC-CccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEE
Confidence 9999987422 111 0 00 0147788889999 999865
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.55 E-value=8.3e-08 Score=97.19 Aligned_cols=106 Identities=14% Similarity=0.029 Sum_probs=77.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc--------C--------CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKA--------G--------AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE 182 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~--------g--------~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~ 182 (405)
..++ +|||.+||+|.+...+++. + ...++|+|+++ ++.+|+.++..+++..++.+.++|...
T Consensus 243 p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~ 321 (544)
T 3khk_A 243 PYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFL 321 (544)
T ss_dssp CCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTT
T ss_pred cCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhc
Confidence 3444 9999999999888777542 0 34899999999 999999999999987655557888755
Q ss_pred cc-CCCCceeEEEEcccccccc-------------------------Chh-hHHHHHHHHHhcccCCcEEE
Q 015534 183 IE-LPVTKVDIIISEWMGYFLL-------------------------FEN-MLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 183 ~~-~~~~~~D~Iv~~~~~~~l~-------------------------~~~-~~~~~l~~~~~~LkpgG~li 226 (405)
.+ .+..+||+|++++....-. ... .--.++..+.+.|+|||++.
T Consensus 322 ~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a 392 (544)
T 3khk_A 322 DDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMA 392 (544)
T ss_dssp SCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEE
T ss_pred CcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEE
Confidence 43 3357899999997432100 000 01157888889999999865
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=2.3e-07 Score=88.28 Aligned_cols=71 Identities=18% Similarity=0.219 Sum_probs=59.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
+.+|.+||||||++|.++..+++.|. +|+|||+.+|...+. .. .+|+++.+|...+..+..++|+|+|++.
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~l~~~l~----~~---~~V~~~~~d~~~~~~~~~~~D~vvsDm~ 279 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGPMAQSLM----DT---GQVTWLREDGFKFRPTRSNISWMVCDMV 279 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSCCCHHHH----TT---TCEEEECSCTTTCCCCSSCEEEEEECCS
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhhcChhhc----cC---CCeEEEeCccccccCCCCCcCEEEEcCC
Confidence 57899999999999999999999976 999999887433322 12 4699999999998877678999999865
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.4e-07 Score=88.46 Aligned_cols=120 Identities=20% Similarity=0.181 Sum_probs=84.8
Q ss_pred HHHHHHHhcc-CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc---CC----CCcEEEEEcc
Q 015534 109 SYQNVIYQNK-FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN---GF----SNVITVLKGK 179 (405)
Q Consensus 109 ~~~~~i~~~~-~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~---~~----~~~i~~~~~d 179 (405)
.|.+.+.... ...++++||-||.|.|..+..+.+.+..+|+.||+++ +++.|++.+... .+ .++++++.+|
T Consensus 191 ~Y~e~l~h~~l~~~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~D 270 (381)
T 3c6k_A 191 AYTRAIMGSGKEDYTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIED 270 (381)
T ss_dssp HHHHHHTTTTCCCCTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESC
T ss_pred HHHHHHHHHHhhcCCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHH
Confidence 3555444221 1235689999999999999999997778999999999 999999976321 11 1468999999
Q ss_pred cccccC----CCCceeEEEEcccccccc------Ch-hhHHHHHHHHHhcccCCcEEEec
Q 015534 180 IEEIEL----PVTKVDIIISEWMGYFLL------FE-NMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 180 ~~~~~~----~~~~~D~Iv~~~~~~~l~------~~-~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
...+.- ..++||+|+.+....... .. .-...+++.+.+.|+|||+++.+
T Consensus 271 a~~fl~~~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 271 CIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp HHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHhhhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 876531 236899999875321110 01 12256788899999999998854
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.40 E-value=9.4e-08 Score=86.99 Aligned_cols=107 Identities=17% Similarity=0.169 Sum_probs=68.0
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (405)
..+.++.+|||||||.|.++..+++ .|+..|+|+|++. +...+... ...+ .++..+..++....++.+++|+|+|
T Consensus 86 ~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g--~~ii~~~~~~dv~~l~~~~~DvVLS 162 (282)
T 3gcz_A 86 GYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLG--WNLIRFKDKTDVFNMEVIPGDTLLC 162 (282)
T ss_dssp TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTT--GGGEEEECSCCGGGSCCCCCSEEEE
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCC--CceEEeeCCcchhhcCCCCcCEEEe
Confidence 3567888999999999999999886 6778999999975 43222110 0011 1233334333333455689999999
Q ss_pred ccccccccChhh---HHHHHHHHHhcccCC--cEEEe
Q 015534 196 EWMGYFLLFENM---LNTVLYARDKWLVDD--GIVLP 227 (405)
Q Consensus 196 ~~~~~~l~~~~~---~~~~l~~~~~~Lkpg--G~lip 227 (405)
++........-+ .-.++.-+.++|+|| |.++.
T Consensus 163 DmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~ 199 (282)
T 3gcz_A 163 DIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCI 199 (282)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred cCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEE
Confidence 875541111111 113466677999999 99873
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.40 E-value=4.9e-07 Score=82.71 Aligned_cols=106 Identities=21% Similarity=0.161 Sum_probs=71.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-------CC------CeEEEEechH---------------HHHHHHHHHHHcC----
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-------GA------AHVYAVECSQ---------------MANMAKQIVEANG---- 168 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-------g~------~~V~~vD~s~---------------~~~~a~~~~~~~~---- 168 (405)
.++.+|||||+|+|..++.+++. +. .+++++|..| +.+.|++.+....
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 35579999999999888776552 22 4899999754 3335666655421
Q ss_pred ------CC---CcEEEEEcccccc-c-CCC---CceeEEEEccccccccChh-hHHHHHHHHHhcccCCcEEEe
Q 015534 169 ------FS---NVITVLKGKIEEI-E-LPV---TKVDIIISEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 169 ------~~---~~i~~~~~d~~~~-~-~~~---~~~D~Iv~~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip 227 (405)
+. .+++++.+|+.+. + ++. ..||+|+.+.+.-.- ++. .-+.++..+.++|+|||+++.
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~-~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAK-NPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTT-CGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCccc-ChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 11 3588999999874 2 221 279999987542211 222 135789999999999999884
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=6e-07 Score=85.90 Aligned_cols=114 Identities=18% Similarity=0.057 Sum_probs=86.7
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCC-CeEEEEechH-HHHHHHHHHHHcCCC-----CcEEEEEccccccc-CCCCc
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFS-----NVITVLKGKIEEIE-LPVTK 189 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~-~~V~~vD~s~-~~~~a~~~~~~~~~~-----~~i~~~~~d~~~~~-~~~~~ 189 (405)
+...+|.+|||+.+|.|.=+..+++.+. ..|+|+|+++ -+..+++++.+.+.. .++.+...|...+. ...+.
T Consensus 144 L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~ 223 (359)
T 4fzv_A 144 LGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDT 223 (359)
T ss_dssp HCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTC
T ss_pred hCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhcccc
Confidence 4567899999999999999999998643 4799999999 999999999887653 46899999988764 23478
Q ss_pred eeEEEEcccccc----ccC----------hh-------hHHHHHHHHHhcccCCcEEEecCce
Q 015534 190 VDIIISEWMGYF----LLF----------EN-------MLNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 190 ~D~Iv~~~~~~~----l~~----------~~-------~~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
||.|+++..-.. ... .. ....++....++|||||+++-++++
T Consensus 224 fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCS 286 (359)
T 4fzv_A 224 YDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCS 286 (359)
T ss_dssp EEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred CCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Confidence 999998643221 110 01 1136777888999999999976655
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.1e-06 Score=88.94 Aligned_cols=105 Identities=13% Similarity=0.134 Sum_probs=71.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC----CCeEEEEechH-HHHHH--HHHHHHcCCC---CcEEEEEccccccc-CCCCc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAG----AAHVYAVECSQ-MANMA--KQIVEANGFS---NVITVLKGKIEEIE-LPVTK 189 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g----~~~V~~vD~s~-~~~~a--~~~~~~~~~~---~~i~~~~~d~~~~~-~~~~~ 189 (405)
.++.+|||.|||+|.++..+++.. ..+++|+|+++ +++.| +.++..+++. +...+...|+.... ...++
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 467899999999999999998842 24799999999 99999 5544432221 12355566665532 22468
Q ss_pred eeEEEEcccccccc-C-h-------------------------hhHHHHHHHHHhcccCCcEEE
Q 015534 190 VDIIISEWMGYFLL-F-E-------------------------NMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~-~-~-------------------------~~~~~~l~~~~~~LkpgG~li 226 (405)
||+|++++. |... . . .....++..+.++|+|||++.
T Consensus 400 FDVVIgNPP-Yg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLA 462 (878)
T 3s1s_A 400 VSVVVMNPP-YVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVIS 462 (878)
T ss_dssp EEEEEECCB-CCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEE
T ss_pred CCEEEECCC-ccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEE
Confidence 999999974 3221 1 0 012346777889999999876
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.30 E-value=6.7e-07 Score=73.18 Aligned_cols=68 Identities=16% Similarity=0.183 Sum_probs=51.5
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCc-HHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTG-ILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G-~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (405)
.+...|.+. ..++.+|||||||.| ..+..|++ .|. .|+++|+++ .++ +++.|+.+..+
T Consensus 24 ~LaeYI~~~--~~~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~----------------~v~dDiF~P~~ 84 (153)
T 2k4m_A 24 DLAVYIIRC--SGPGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGG----------------IVRDDITSPRM 84 (153)
T ss_dssp HHHHHHHHH--SCSSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTT----------------EECCCSSSCCH
T ss_pred HHHHHHHhc--CCCCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccc----------------eEEccCCCCcc
Confidence 455555533 245679999999999 69999997 876 899999999 554 78888877433
Q ss_pred C-CCceeEEEE
Q 015534 186 P-VTKVDIIIS 195 (405)
Q Consensus 186 ~-~~~~D~Iv~ 195 (405)
. -+.||+|.+
T Consensus 85 ~~Y~~~DLIYs 95 (153)
T 2k4m_A 85 EIYRGAALIYS 95 (153)
T ss_dssp HHHTTEEEEEE
T ss_pred cccCCcCEEEE
Confidence 2 148999976
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1e-05 Score=71.37 Aligned_cols=103 Identities=17% Similarity=0.243 Sum_probs=69.3
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEc-ccccccCCCCceeEEEE
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEEIELPVTKVDIIIS 195 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~D~Iv~ 195 (405)
.+.++.+||||||++|.++..++. .|+.+|+|+|+-. -.+. -..++..|+ +.++|..+ |+..++. .++|+|+|
T Consensus 75 ~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~-P~~~~s~gw-n~v~fk~gvDv~~~~~--~~~Dtllc 150 (267)
T 3p8z_A 75 MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEE-PVPMSTYGW-NIVKLMSGKDVFYLPP--EKCDTLLC 150 (267)
T ss_dssp SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCCTTT-TSEEEECSCCGGGCCC--CCCSEEEE
T ss_pred CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccC-cchhhhcCc-CceEEEeccceeecCC--ccccEEEE
Confidence 567888999999999999998877 7888999999965 2110 001123455 45999999 9866643 77999999
Q ss_pred ccccccccChhhH---HHHHHHHHhcccCCcEEE
Q 015534 196 EWMGYFLLFENML---NTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 196 ~~~~~~l~~~~~~---~~~l~~~~~~LkpgG~li 226 (405)
++-......+-.- -.+++-+.++|++ |-++
T Consensus 151 DIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc 183 (267)
T 3p8z_A 151 DIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFC 183 (267)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEE
T ss_pred ecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEE
Confidence 7633221111111 2356666799998 5443
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=8.7e-07 Score=81.13 Aligned_cols=114 Identities=17% Similarity=0.149 Sum_probs=69.2
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (405)
+.++..+ ....++.+||||||++|.++..+++ .|+..|+|+|+.. +...... ....+. +.+.+ ..++....++.
T Consensus 70 L~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~~-~iv~~-~~~~di~~l~~ 145 (300)
T 3eld_A 70 IRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLGW-NIVKF-KDKSNVFTMPT 145 (300)
T ss_dssp HHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTTG-GGEEE-ECSCCTTTSCC
T ss_pred HHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccCC-ceEEe-ecCceeeecCC
Confidence 3334444 4456889999999999999999998 5777899999975 3111000 000011 22333 33333233455
Q ss_pred CceeEEEEccccccccChhh---HHHHHHHHHhcccCC-cEEEe
Q 015534 188 TKVDIIISEWMGYFLLFENM---LNTVLYARDKWLVDD-GIVLP 227 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~---~~~~l~~~~~~Lkpg-G~lip 227 (405)
+++|+|+|+...+.....-+ ...++.-+.++|+|| |.++.
T Consensus 146 ~~~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~ 189 (300)
T 3eld_A 146 EPSDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCV 189 (300)
T ss_dssp CCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEE
T ss_pred CCcCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 79999999865541111111 123466677999999 99874
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.19 E-value=2.9e-06 Score=77.64 Aligned_cols=74 Identities=19% Similarity=0.200 Sum_probs=62.0
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CCCCcee
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTKVD 191 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~D 191 (405)
....++..+||.+||.|..+..+++. ..+|+|+|.++ +++.|++ +.. ++++++++++.++. ...+++|
T Consensus 18 L~~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~~~g~~~vD 91 (285)
T 1wg8_A 18 LAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLAALGVERVD 91 (285)
T ss_dssp HTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHHHTTCSCEE
T ss_pred hCCCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHHHcCCCCcC
Confidence 34568889999999999999999998 45999999999 9999998 543 47999999998874 2235799
Q ss_pred EEEEcc
Q 015534 192 IIISEW 197 (405)
Q Consensus 192 ~Iv~~~ 197 (405)
.|++++
T Consensus 92 gIL~DL 97 (285)
T 1wg8_A 92 GILADL 97 (285)
T ss_dssp EEEEEC
T ss_pred EEEeCC
Confidence 999864
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.14 E-value=2e-05 Score=75.68 Aligned_cols=106 Identities=14% Similarity=0.095 Sum_probs=66.9
Q ss_pred CCEEEEEcCCCcHHHHHHHHc----------------CCCeEEEEechH-HHHHHHHHHHHcC-----------C--C-C
Q 015534 123 DKVVLDVGAGTGILSLFCAKA----------------GAAHVYAVECSQ-MANMAKQIVEANG-----------F--S-N 171 (405)
Q Consensus 123 ~~~VLDiGcG~G~l~~~la~~----------------g~~~V~~vD~s~-~~~~a~~~~~~~~-----------~--~-~ 171 (405)
+.+|+|+|||+|..++.+... +.-+|+..|+.. .....-+.+.... . + -
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 478999999999988887321 234778888766 4333222222110 0 0 0
Q ss_pred cEEEEEcccccccCCCCceeEEEEccccccccChh-----------------------------------hHHHHHHHHH
Q 015534 172 VITVLKGKIEEIELPVTKVDIIISEWMGYFLLFEN-----------------------------------MLNTVLYARD 216 (405)
Q Consensus 172 ~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~-----------------------------------~~~~~l~~~~ 216 (405)
-+.-+.+..-.-.+|.+++|+|+++...+++...+ ++..+++.++
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12223333333447789999999987666654211 5567889999
Q ss_pred hcccCCcEEEec
Q 015534 217 KWLVDDGIVLPD 228 (405)
Q Consensus 217 ~~LkpgG~lip~ 228 (405)
+.|+|||+++..
T Consensus 213 ~eL~pGG~mvl~ 224 (374)
T 3b5i_A 213 AEVKRGGAMFLV 224 (374)
T ss_dssp HHEEEEEEEEEE
T ss_pred HHhCCCCEEEEE
Confidence 999999999854
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.7e-05 Score=72.18 Aligned_cols=105 Identities=20% Similarity=0.197 Sum_probs=68.1
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEc-ccccccCCCCceeEEE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEEIELPVTKVDIII 194 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~D~Iv 194 (405)
..+.++.+||||||++|.++..++. .|+.+|+|+|+-. -.+. -..++..++ +-|+++.+ |+..++. .++|+|+
T Consensus 90 ~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~-P~~~~ql~w-~lV~~~~~~Dv~~l~~--~~~D~iv 165 (321)
T 3lkz_A 90 RFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEE-PQLVQSYGW-NIVTMKSGVDVFYRPS--ECCDTLL 165 (321)
T ss_dssp TSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCC-CCCCCBTTG-GGEEEECSCCTTSSCC--CCCSEEE
T ss_pred cCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccC-cchhhhcCC-cceEEEeccCHhhCCC--CCCCEEE
Confidence 5567888999999999999997777 7888999999865 1100 000012233 34888887 8876653 6799999
Q ss_pred EccccccccChhhH---HHHHHHHHhcccCC-cEEE
Q 015534 195 SEWMGYFLLFENML---NTVLYARDKWLVDD-GIVL 226 (405)
Q Consensus 195 ~~~~~~~l~~~~~~---~~~l~~~~~~Lkpg-G~li 226 (405)
|++--.....+-.- -.+++-+.++|++| |-++
T Consensus 166 cDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~ 201 (321)
T 3lkz_A 166 CDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFC 201 (321)
T ss_dssp ECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred EECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEE
Confidence 97532111111111 23566667899988 6554
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=3e-05 Score=69.48 Aligned_cols=100 Identities=18% Similarity=0.177 Sum_probs=62.9
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc-CC----CeEEEEe--chHHHHHHHHHHHHcCCCCcEEEEEc-ccccccCCCCc
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GA----AHVYAVE--CSQMANMAKQIVEANGFSNVITVLKG-KIEEIELPVTK 189 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~-g~----~~V~~vD--~s~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~ 189 (405)
.-+.++.+|||+||+.|.++..+++. +. ..|+|+| +.|+... ..|+ +-++|..+ |+.++. ..+
T Consensus 69 ~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~------~~Gv-~~i~~~~G~Df~~~~--~~~ 139 (269)
T 2px2_A 69 RFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQ------SYGW-NIVTMKSGVDVFYKP--SEI 139 (269)
T ss_dssp TSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCC------STTG-GGEEEECSCCGGGSC--CCC
T ss_pred CCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCccc------CCCc-eEEEeeccCCccCCC--CCC
Confidence 35678999999999999999999985 23 2455556 3221000 0121 23566667 998753 368
Q ss_pred eeEEEEccccccccChhhHH---HHHHHHHhcccCCc-EEE
Q 015534 190 VDIIISEWMGYFLLFENMLN---TVLYARDKWLVDDG-IVL 226 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~---~~l~~~~~~LkpgG-~li 226 (405)
+|+|+|++........-+.. .+++-+.++|+||| .++
T Consensus 140 ~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~Fv 180 (269)
T 2px2_A 140 SDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFC 180 (269)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEE
T ss_pred CCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEE
Confidence 99999987544211111111 14555668999999 766
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=2.1e-05 Score=75.59 Aligned_cols=102 Identities=14% Similarity=0.093 Sum_probs=65.2
Q ss_pred CCEEEEEcCCCcHHHHHHHHc------------------CCCeEEEEech-----------H-HHHHHHHHHHHcCCCCc
Q 015534 123 DKVVLDVGAGTGILSLFCAKA------------------GAAHVYAVECS-----------Q-MANMAKQIVEANGFSNV 172 (405)
Q Consensus 123 ~~~VLDiGcG~G~l~~~la~~------------------g~~~V~~vD~s-----------~-~~~~a~~~~~~~~~~~~ 172 (405)
..+|+|+|||+|..++.+... +.-+|+..|+. + +.+.++ ...+-..+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~---~~~g~~~~ 129 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLE---KENGRKIG 129 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHH---HHTCCCTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhh---hhccCCCC
Confidence 578999999999888877654 12368888876 3 222221 12221111
Q ss_pred EEEEEccccc---ccCCCCceeEEEEccccccccChh------------------------------------hHHHHHH
Q 015534 173 ITVLKGKIEE---IELPVTKVDIIISEWMGYFLLFEN------------------------------------MLNTVLY 213 (405)
Q Consensus 173 i~~~~~d~~~---~~~~~~~~D~Iv~~~~~~~l~~~~------------------------------------~~~~~l~ 213 (405)
--|+.+.... -.+|.+++|+|+++...+++...+ ++..+++
T Consensus 130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~ 209 (384)
T 2efj_A 130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLR 209 (384)
T ss_dssp SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2445444433 457789999999976655553321 2234588
Q ss_pred HHHhcccCCcEEEe
Q 015534 214 ARDKWLVDDGIVLP 227 (405)
Q Consensus 214 ~~~~~LkpgG~lip 227 (405)
.+++.|+|||+++.
T Consensus 210 ~Ra~eL~pGG~mvl 223 (384)
T 2efj_A 210 IHSEELISRGRMLL 223 (384)
T ss_dssp HHHHHEEEEEEEEE
T ss_pred HHHHHhccCCeEEE
Confidence 88999999999985
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.84 E-value=3.8e-05 Score=71.74 Aligned_cols=47 Identities=34% Similarity=0.357 Sum_probs=43.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcC
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANG 168 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~ 168 (405)
.++.+|||++||+|.++..+++.|. +++|+|+++ +++.|++++....
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~~~ 281 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFAREV 281 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHhc
Confidence 6788999999999999999999876 999999999 9999999987653
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0001 Score=74.40 Aligned_cols=86 Identities=14% Similarity=0.099 Sum_probs=63.5
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc----C----------CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEE
Q 015534 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA----G----------AAHVYAVECSQ-MANMAKQIVEANGFSNVITVL 176 (405)
Q Consensus 112 ~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~----g----------~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~ 176 (405)
+.+.......++.+|+|-+||+|.+...+.+. + ...++|+|+++ +..+|+-++--.|... ..+.
T Consensus 207 ~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~-~~I~ 285 (530)
T 3ufb_A 207 RFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEY-PRID 285 (530)
T ss_dssp HHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSC-CEEE
T ss_pred HHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcc-cccc
Confidence 34444445567789999999999998777652 1 23699999999 9999999888888742 4667
Q ss_pred EcccccccC----CCCceeEEEEccc
Q 015534 177 KGKIEEIEL----PVTKVDIIISEWM 198 (405)
Q Consensus 177 ~~d~~~~~~----~~~~~D~Iv~~~~ 198 (405)
.+|....+. +..+||+|++++.
T Consensus 286 ~~dtL~~~~~~~~~~~~fD~Il~NPP 311 (530)
T 3ufb_A 286 PENSLRFPLREMGDKDRVDVILTNPP 311 (530)
T ss_dssp CSCTTCSCGGGCCGGGCBSEEEECCC
T ss_pred ccccccCchhhhcccccceEEEecCC
Confidence 777654332 2357999999975
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.55 E-value=4e-05 Score=73.10 Aligned_cols=105 Identities=15% Similarity=0.195 Sum_probs=69.8
Q ss_pred CCEEEEEcCCCcHHHHHHHHc------------C-----CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEc---ccc
Q 015534 123 DKVVLDVGAGTGILSLFCAKA------------G-----AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG---KIE 181 (405)
Q Consensus 123 ~~~VLDiGcG~G~l~~~la~~------------g-----~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~---d~~ 181 (405)
..+|+|+||++|..++.+... + .-+|+..|... ....+-+.+....-..+--|+.+ .+-
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy 131 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence 467999999999776654432 1 23799999988 77666555443110001234443 444
Q ss_pred cccCCCCceeEEEEccccccccC------------------------------hhhHHHHHHHHHhcccCCcEEEe
Q 015534 182 EIELPVTKVDIIISEWMGYFLLF------------------------------ENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 182 ~~~~~~~~~D~Iv~~~~~~~l~~------------------------------~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.-.+|.+++|+|+++...+++.. ..++..+++.+++.|+|||+++.
T Consensus 132 ~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl 207 (359)
T 1m6e_X 132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVL 207 (359)
T ss_dssp SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEE
T ss_pred hccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 45578899999999765555432 12456779999999999999985
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00067 Score=61.76 Aligned_cols=107 Identities=14% Similarity=0.102 Sum_probs=70.5
Q ss_pred HHhHHHHHHHHHh-ccCCCCCCEEEEEcC------CCcHHHHHHHHcCC--CeEEEEechH-HHHHHHHHHHHcCCCCcE
Q 015534 104 VVRTKSYQNVIYQ-NKFLFKDKVVLDVGA------GTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVI 173 (405)
Q Consensus 104 ~~r~~~~~~~i~~-~~~~~~~~~VLDiGc------G~G~l~~~la~~g~--~~V~~vD~s~-~~~~a~~~~~~~~~~~~i 173 (405)
-..+..+.+.|.. ......+.+|||+|+ -.|. ..+.+.+. ..|+++|+.+ .. ..+
T Consensus 90 v~kytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~s-----------da~-- 154 (344)
T 3r24_A 90 VAKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVS-----------DAD-- 154 (344)
T ss_dssp HHHHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBC-----------SSS--
T ss_pred HHHHHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCccccc-----------CCC--
Confidence 3445566666643 345567899999997 4455 34445443 3999999988 31 112
Q ss_pred EEEEcccccccCCCCceeEEEEcccccccc--------ChhhHHHHHHHHHhcccCCcEEE
Q 015534 174 TVLKGKIEEIELPVTKVDIIISEWMGYFLL--------FENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 174 ~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~--------~~~~~~~~l~~~~~~LkpgG~li 226 (405)
.++++|...+... ++||+|+|++....-. .....+.+++-+.+.|+|||.++
T Consensus 155 ~~IqGD~~~~~~~-~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFv 214 (344)
T 3r24_A 155 STLIGDCATVHTA-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIA 214 (344)
T ss_dssp EEEESCGGGEEES-SCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEE
T ss_pred eEEEccccccccC-CCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEE
Confidence 4599998776554 8899999975322111 11245666777788999999987
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00031 Score=66.86 Aligned_cols=80 Identities=15% Similarity=0.085 Sum_probs=59.3
Q ss_pred hhcCHHhHHHHHHHHHhccC--CCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEE
Q 015534 100 MLKDVVRTKSYQNVIYQNKF--LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITV 175 (405)
Q Consensus 100 ~l~d~~r~~~~~~~i~~~~~--~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~ 175 (405)
++.|..-.+...+++.-... ..++..|||||.|.|.++..+++. .+++|+++|+++ ++...++.. . .+++++
T Consensus 34 FL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~---~~~l~i 109 (353)
T 1i4w_A 34 YLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E---GSPLQI 109 (353)
T ss_dssp CBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T---TSSCEE
T ss_pred ccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c---CCCEEE
Confidence 56666555555555431110 014689999999999999999985 457999999999 999998876 2 257999
Q ss_pred EEcccccc
Q 015534 176 LKGKIEEI 183 (405)
Q Consensus 176 ~~~d~~~~ 183 (405)
+.+|+.++
T Consensus 110 i~~D~l~~ 117 (353)
T 1i4w_A 110 LKRDPYDW 117 (353)
T ss_dssp ECSCTTCH
T ss_pred EECCccch
Confidence 99999655
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00014 Score=66.45 Aligned_cols=109 Identities=16% Similarity=0.128 Sum_probs=79.9
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc-c
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-E 184 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~ 184 (405)
...|.+.|.. ..+..+||+=+|||.+++.+.+. ..+++.+|.++ .++..++++.. .++++++..|.... .
T Consensus 80 l~~yf~~l~~----~n~~~~LDlfaGSGaLgiEaLS~-~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~ 151 (283)
T 2oo3_A 80 FLEYISVIKQ----INLNSTLSYYPGSPYFAINQLRS-QDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLN 151 (283)
T ss_dssp GHHHHHHHHH----HSSSSSCCEEECHHHHHHHHSCT-TSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHH
T ss_pred HHHHHHHHHH----hcCCCceeEeCCcHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHH
Confidence 3467777765 24556899999999999999984 57999999999 99999888865 36799999997552 2
Q ss_pred ---CCCCceeEEEEccccccccChhhHHHHHHHHHh--cccCCcEEE
Q 015534 185 ---LPVTKVDIIISEWMGYFLLFENMLNTVLYARDK--WLVDDGIVL 226 (405)
Q Consensus 185 ---~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~--~LkpgG~li 226 (405)
.+..+||+|+.++. |.. ......++..+.+ .+.|+|+++
T Consensus 152 ~l~~~~~~fdLVfiDPP-Ye~--k~~~~~vl~~L~~~~~r~~~Gi~v 195 (283)
T 2oo3_A 152 ALLPPPEKRGLIFIDPS-YER--KEEYKEIPYAIKNAYSKFSTGLYC 195 (283)
T ss_dssp HHCSCTTSCEEEEECCC-CCS--TTHHHHHHHHHHHHHHHCTTSEEE
T ss_pred HhcCCCCCccEEEECCC-CCC--CcHHHHHHHHHHHhCccCCCeEEE
Confidence 23357999999874 321 1355555555543 457899877
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0004 Score=63.37 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=42.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCC
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF 169 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~ 169 (405)
..++..|||..||+|..+..+.+.|. +++|+|+++ .++.|++++..+++
T Consensus 210 ~~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~~~~r~~~~~~ 259 (260)
T 1g60_A 210 SNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLNQLEI 259 (260)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC---
T ss_pred CCCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhccC
Confidence 36888999999999999999999875 999999999 99999999987653
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00068 Score=63.41 Aligned_cols=75 Identities=17% Similarity=0.263 Sum_probs=60.2
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CC----CC
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LP----VT 188 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~----~~ 188 (405)
+...+|..++|..||.|..+..+++. | ..+|+|+|.++ +++.|+ ++ ..+++++++++..++. ++ .+
T Consensus 53 L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~~l~~~L~~~g~~~ 127 (347)
T 3tka_A 53 LNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFSALGEYVAERDLIG 127 (347)
T ss_dssp TCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGGGHHHHHHHTTCTT
T ss_pred hCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHHHHHHHHHhcCCCC
Confidence 45678999999999999999999984 3 56999999999 999884 33 1368999999998874 11 13
Q ss_pred ceeEEEEcc
Q 015534 189 KVDIIISEW 197 (405)
Q Consensus 189 ~~D~Iv~~~ 197 (405)
++|.|+.++
T Consensus 128 ~vDgILfDL 136 (347)
T 3tka_A 128 KIDGILLDL 136 (347)
T ss_dssp CEEEEEEEC
T ss_pred cccEEEECC
Confidence 699999864
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0034 Score=59.31 Aligned_cols=119 Identities=13% Similarity=0.160 Sum_probs=82.7
Q ss_pred hHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcC----------------
Q 015534 106 RTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANG---------------- 168 (405)
Q Consensus 106 r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~---------------- 168 (405)
|+..+.+.+.+.....+...|+.||||.......+... +..+++-||..++++.-++.+...+
T Consensus 81 Rt~~iD~~v~~fl~~~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~ 160 (334)
T 1rjd_A 81 RTVGIDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKS 160 (334)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCT
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhccccccccccc
Confidence 44444444443332245678999999999998888874 4447888888448877777777652
Q ss_pred ----CCCcEEEEEccccccc--------C-CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 169 ----FSNVITVLKGKIEEIE--------L-PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 169 ----~~~~i~~~~~d~~~~~--------~-~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
.+++..++..|+.+.. . ......+++++.+..++ .+.....++..+.... |+|.++
T Consensus 161 ~~~~~~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL-~~~~~~~ll~~ia~~~-~~~~~v 229 (334)
T 1rjd_A 161 PFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYM-HNNESQLLINTIMSKF-SHGLWI 229 (334)
T ss_dssp TEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGS-CHHHHHHHHHHHHHHC-SSEEEE
T ss_pred ccccCCCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCC-CHHHHHHHHHHHHhhC-CCcEEE
Confidence 1367999999998732 1 23568899999887766 4556778888887776 677664
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0051 Score=58.95 Aligned_cols=96 Identities=23% Similarity=0.274 Sum_probs=64.4
Q ss_pred hccCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc----c-CCC
Q 015534 116 QNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI----E-LPV 187 (405)
Q Consensus 116 ~~~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~-~~~ 187 (405)
......++.+||.+|+|. |.++..+|+ .|+.+|+++|.++ .++.+++. |. + .++..+-.++ . ...
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga-~--~vi~~~~~~~~~~~~~~~~ 256 (371)
T 1f8f_A 184 NALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GA-T--HVINSKTQDPVAAIKEITD 256 (371)
T ss_dssp TTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TC-S--EEEETTTSCHHHHHHHHTT
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CC-C--EEecCCccCHHHHHHHhcC
Confidence 345678899999999987 788888888 6777899999999 88887653 32 1 2232211111 0 112
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+.+|+|+-.. + . ...+....++|+++|+++.
T Consensus 257 gg~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~ 287 (371)
T 1f8f_A 257 GGVNFALEST-G----S----PEILKQGVDALGILGKIAV 287 (371)
T ss_dssp SCEEEEEECS-C----C----HHHHHHHHHTEEEEEEEEE
T ss_pred CCCcEEEECC-C----C----HHHHHHHHHHHhcCCEEEE
Confidence 3799998532 1 1 2345666689999999874
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0019 Score=62.20 Aligned_cols=69 Identities=26% Similarity=0.149 Sum_probs=56.3
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC--------CCCceeEEE
Q 015534 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL--------PVTKVDIII 194 (405)
Q Consensus 124 ~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~~~D~Iv 194 (405)
.+|+|+-||.|.+++.+.++|+..|.++|+++ .++..+.++. ...++.+|+.++.. ....+|+|+
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~------~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ 76 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP------RSLHVQEDVSLLNAEIIKGFFKNDMPIDGII 76 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT------TSEEECCCGGGCCHHHHHHHHCSCCCCCEEE
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC------CCceEecChhhcCHHHHHhhcccCCCeeEEE
Confidence 47999999999999999999998899999999 8888776642 25788899987741 236899999
Q ss_pred Eccc
Q 015534 195 SEWM 198 (405)
Q Consensus 195 ~~~~ 198 (405)
..+.
T Consensus 77 ggpP 80 (376)
T 3g7u_A 77 GGPP 80 (376)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 8653
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.00095 Score=63.47 Aligned_cols=69 Identities=22% Similarity=0.184 Sum_probs=55.5
Q ss_pred CEEEEEcCCCcHHHHHHHHcC--CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC---CCCceeEEEEcc
Q 015534 124 KVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---PVTKVDIIISEW 197 (405)
Q Consensus 124 ~~VLDiGcG~G~l~~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~D~Iv~~~ 197 (405)
.+|+|+.||.|.+++.+.++| +..|+++|+++ +++..+.++.. ..++.+|+.++.. +...+|+|+..+
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~------~~~~~~Di~~~~~~~~~~~~~D~l~~gp 76 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH------TQLLAKTIEGITLEEFDRLSFDMILMSP 76 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc------cccccCCHHHccHhHcCcCCcCEEEEcC
Confidence 579999999999999999998 56899999999 99988887532 3477899988742 112699999865
Q ss_pred c
Q 015534 198 M 198 (405)
Q Consensus 198 ~ 198 (405)
.
T Consensus 77 P 77 (343)
T 1g55_A 77 P 77 (343)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0038 Score=58.82 Aligned_cols=68 Identities=21% Similarity=0.295 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC-CCceeEEEEcc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEW 197 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~ 197 (405)
.+.+|+|+.||.|.+++.+.++|+..|.++|+++ .++..+.++... . .+|+.++... ...+|+|+..+
T Consensus 10 ~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~-----~---~~Di~~~~~~~~~~~D~l~~gp 79 (327)
T 2c7p_A 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-----P---EGDITQVNEKTIPDHDILCAGF 79 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-----C---BSCGGGSCGGGSCCCSEEEEEC
T ss_pred CCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC-----C---cCCHHHcCHhhCCCCCEEEECC
Confidence 4579999999999999999999998999999999 998888876421 1 6888776421 13599999854
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0085 Score=58.29 Aligned_cols=63 Identities=17% Similarity=0.140 Sum_probs=51.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHH-Hc-C-CCeEEEEechH-HHHHHHHHHHH--cCCC-CcEEEEEccccc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCA-KA-G-AAHVYAVECSQ-MANMAKQIVEA--NGFS-NVITVLKGKIEE 182 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la-~~-g-~~~V~~vD~s~-~~~~a~~~~~~--~~~~-~~i~~~~~d~~~ 182 (405)
..++.+|+||||+.|..+..++ +. | ..+|+++|++| ..+.+++++.. |+.. +++++++.-+.+
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~~ 293 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGE 293 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECS
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEEC
Confidence 3678899999999999999888 43 3 37999999999 99999999998 4333 578888766544
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.047 Score=50.87 Aligned_cols=120 Identities=7% Similarity=0.044 Sum_probs=82.0
Q ss_pred hHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCC--CCcEEEEEccccc
Q 015534 106 RTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF--SNVITVLKGKIEE 182 (405)
Q Consensus 106 r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~--~~~i~~~~~d~~~ 182 (405)
|+..+.+.+...... ....|++||||-=..+..+......+|+-||. | +++..++.+...+. +++..++.+|+.+
T Consensus 87 Rt~~~d~~v~~~~~~-g~~QvV~LGaGlDTra~Rl~~~~~~~v~evD~-P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d 164 (310)
T 2uyo_A 87 RTNFFDTYFNNAVID-GIRQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQ 164 (310)
T ss_dssp HHHHHHHHHHHHHHT-TCCEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTS
T ss_pred HHHHHHHHHHHHHHh-CCCeEEEeCCCCCchhhhccCCCCcEEEEcCC-HHHHHHHHHHHHhcCCCCCCCeEEEecchHh
Confidence 444444444433221 23579999999876655544211358999995 6 99998988876542 3678999999976
Q ss_pred cc---------CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 183 IE---------LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 183 ~~---------~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
. +.....=+++++.+.+++.. .....++..+...+.||+.++.+.
T Consensus 165 -~~~~~l~~~g~d~~~Pt~~i~Egvl~Yl~~-~~~~~ll~~l~~~~~~gs~l~~d~ 218 (310)
T 2uyo_A 165 -DWPPALRSAGFDPSARTAWLAEGLLMYLPA-TAQDGLFTEIGGLSAVGSRIAVET 218 (310)
T ss_dssp -CHHHHHHHTTCCTTSCEEEEECSCGGGSCH-HHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred -hHHHHHHhccCCCCCCEEEEEechHhhCCH-HHHHHHHHHHHHhCCCCeEEEEEe
Confidence 2 12245667888887776644 477889999988889999988654
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.01 Score=57.49 Aligned_cols=103 Identities=17% Similarity=0.052 Sum_probs=64.3
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc-----c--CCC
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-----E--LPV 187 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~--~~~ 187 (405)
....+|.+||.+|+|. |.++..+|+ .|+.+|+++|.++ .++.+++ .|. +++..+-.++ . ...
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa----~~i~~~~~~~~~~~~~~~~~g 252 (398)
T 2dph_A 181 AGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AGF----ETIDLRNSAPLRDQIDQILGK 252 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TTC----EEEETTSSSCHHHHHHHHHSS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC----cEEcCCCcchHHHHHHHHhCC
Confidence 5677899999999987 888888888 6877999999999 8877654 343 2332221111 0 122
Q ss_pred CceeEEEEccccccccC-----hhhHHHHHHHHHhcccCCcEEEec
Q 015534 188 TKVDIIISEWMGYFLLF-----ENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~-----~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
..+|+|+-..-.....+ .......+....++|++||+++..
T Consensus 253 ~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 253 PEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp SCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred CCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 36999986321100000 000123456666899999998743
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.031 Score=54.14 Aligned_cols=98 Identities=18% Similarity=0.102 Sum_probs=62.7
Q ss_pred CCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc------CCCCc
Q 015534 119 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTK 189 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~ 189 (405)
...+|.+||-+|+|. |.++..+|+ .|+.+|+++|.++ -++.+++. |.. .++..+-.++. .....
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~i~~~t~g~g 282 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL----GAD---HVIDPTKENFVEAVLDYTNGLG 282 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCS---EEECTTTSCHHHHHHHHTTTCC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCC---EEEcCCCCCHHHHHHHHhCCCC
Confidence 577899999999976 777888887 6777999999999 88888754 321 22322111111 12247
Q ss_pred eeEEEEccccccccCh-hhHHHHHHHHHhcccCCcEEEec
Q 015534 190 VDIIISEWMGYFLLFE-NMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~-~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+|+|+-.. ... .....++..+.+.++++|+++..
T Consensus 283 ~D~vid~~-----g~~~~~~~~~~~~l~~~~~~~G~iv~~ 317 (404)
T 3ip1_A 283 AKLFLEAT-----GVPQLVWPQIEEVIWRARGINATVAIV 317 (404)
T ss_dssp CSEEEECS-----SCHHHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred CCEEEECC-----CCcHHHHHHHHHHHHhccCCCcEEEEe
Confidence 99998532 111 13334444444556999998854
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.024 Score=52.52 Aligned_cols=106 Identities=17% Similarity=0.134 Sum_probs=63.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHH----cC-CC--eEEEEechH----------HHHHHHHHHHHcCC--CC--cEEEEEccc
Q 015534 122 KDKVVLDVGAGTGILSLFCAK----AG-AA--HVYAVECSQ----------MANMAKQIVEANGF--SN--VITVLKGKI 180 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~----~g-~~--~V~~vD~s~----------~~~~a~~~~~~~~~--~~--~i~~~~~d~ 180 (405)
+.-+|||+|-|+|...+...+ .+ .. +++++|..+ ..+..+........ .. .+++..+|+
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa 175 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA 175 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence 345899999999976544332 22 22 567777521 22223333332210 12 356788888
Q ss_pred cccc--CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 181 EEIE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 181 ~~~~--~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.+.. ++..+||+|+.+.+...-..+---+.++..++++++|||.+.-
T Consensus 176 ~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT 224 (308)
T 3vyw_A 176 RKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS 224 (308)
T ss_dssp HHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE
Confidence 6642 3445899999876543222122236899999999999999873
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.012 Score=55.83 Aligned_cols=96 Identities=19% Similarity=0.188 Sum_probs=63.7
Q ss_pred ccCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc------CCC
Q 015534 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPV 187 (405)
Q Consensus 117 ~~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~ 187 (405)
.....+|.+||-+|+|. |.++..+|+ .|+.+|+++|.++ -++.+++. |.. .++..+-.++. ...
T Consensus 161 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~v~~~t~g 233 (352)
T 3fpc_A 161 LANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY----GAT---DIINYKNGDIVEQILKATDG 233 (352)
T ss_dssp HTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH----TCC---EEECGGGSCHHHHHHHHTTT
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCc---eEEcCCCcCHHHHHHHHcCC
Confidence 35678899999999986 788888888 6777999999999 88887763 331 23322211111 122
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
..+|+|+-.. + .. ..+....++|+|||+++..
T Consensus 234 ~g~D~v~d~~-g----~~----~~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 234 KGVDKVVIAG-G----DV----HTFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp CCEEEEEECS-S----CT----THHHHHHHHEEEEEEEEEC
T ss_pred CCCCEEEECC-C----Ch----HHHHHHHHHHhcCCEEEEe
Confidence 4799998532 1 11 2345556889999998743
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.019 Score=54.52 Aligned_cols=94 Identities=30% Similarity=0.275 Sum_probs=62.6
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcc---cccc----c--C
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK---IEEI----E--L 185 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d---~~~~----~--~ 185 (405)
....+|.+||.+|+|. |.++..+++ .|+.+|+++|.++ -++.+++ .|.. .++..+ ..++ . .
T Consensus 167 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~~i~~~~ 239 (356)
T 1pl8_A 167 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGAD---LVLQISKESPQEIARKVEGQL 239 (356)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS---EEEECSSCCHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC---EEEcCcccccchHHHHHHHHh
Confidence 4567899999999986 788888888 6777999999999 8877764 3432 223222 1111 0 1
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
. ..+|+|+-.. + . ...+....++|+|||+++..
T Consensus 240 ~-~g~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 240 G-CKPEVTIECT-G----A----EASIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp T-SCCSEEEECS-C----C----HHHHHHHHHHSCTTCEEEEC
T ss_pred C-CCCCEEEECC-C----C----hHHHHHHHHHhcCCCEEEEE
Confidence 2 5699998532 1 1 12345556889999998743
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.022 Score=54.51 Aligned_cols=95 Identities=22% Similarity=0.285 Sum_probs=63.6
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEc---cccc-cc----CC
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG---KIEE-IE----LP 186 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~---d~~~-~~----~~ 186 (405)
....+|.+||-+|+|. |.++..+|+ .|+.+|+++|.++ -.+.+++. |.. .++.. |..+ +. ..
T Consensus 178 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~i~~~~~~~ 250 (370)
T 4ej6_A 178 SGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV----GAT---ATVDPSAGDVVEAIAGPVGLV 250 (370)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCS---EEECTTSSCHHHHHHSTTSSS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCC---EEECCCCcCHHHHHHhhhhcc
Confidence 5578899999999976 778888888 6887999999999 88877763 432 22221 2111 10 22
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.+.+|+|+-.. + . ...+....++|++||+++..
T Consensus 251 ~gg~Dvvid~~-G----~----~~~~~~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 251 PGGVDVVIECA-G----V----AETVKQSTRLAKAGGTVVIL 283 (370)
T ss_dssp TTCEEEEEECS-C----C----HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCCEEEECC-C----C----HHHHHHHHHHhccCCEEEEE
Confidence 24899998532 1 1 23455666889999998753
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.018 Score=54.77 Aligned_cols=98 Identities=22% Similarity=0.231 Sum_probs=64.8
Q ss_pred ccCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEc-----cccc-cc--C
Q 015534 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-----KIEE-IE--L 185 (405)
Q Consensus 117 ~~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-----d~~~-~~--~ 185 (405)
.....+|.+||-+|+|. |.++..+|+ .|+..|+++|.++ -++.+++. .. ..+.+... ++.+ +. .
T Consensus 174 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~----~~~~~~~~~~~~~~~~~~v~~~t 248 (363)
T 3m6i_A 174 RAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP----EVVTHKVERLSAEESAKKIVESF 248 (363)
T ss_dssp HHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT----TCEEEECCSCCHHHHHHHHHHHT
T ss_pred HcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch----hcccccccccchHHHHHHHHHHh
Confidence 35578899999999976 788888888 6886799999999 99988875 21 11333211 1111 10 1
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
....+|+|+-.. + . +..+....++|++||+++..
T Consensus 249 ~g~g~Dvvid~~-g----~----~~~~~~~~~~l~~~G~iv~~ 282 (363)
T 3m6i_A 249 GGIEPAVALECT-G----V----ESSIAAAIWAVKFGGKVFVI 282 (363)
T ss_dssp SSCCCSEEEECS-C----C----HHHHHHHHHHSCTTCEEEEC
T ss_pred CCCCCCEEEECC-C----C----hHHHHHHHHHhcCCCEEEEE
Confidence 235799999632 1 1 12445566889999998753
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0021 Score=75.92 Aligned_cols=102 Identities=16% Similarity=0.055 Sum_probs=51.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH-cC-----CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc-cCCCCceeE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAK-AG-----AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDI 192 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~-~g-----~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~ 192 (405)
.+..+|||||.|+|..+..+.+ .+ ...++..|+|+ ..+.|+++++... ++.-..|..+. .+....||+
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d----i~~~~~d~~~~~~~~~~~ydl 1314 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH----VTQGQWDPANPAPGSLGKADL 1314 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT----EEEECCCSSCCCC-----CCE
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc----cccccccccccccCCCCceeE
Confidence 3567999999999976555444 22 34789999999 9888888876532 33322233221 122367999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
|++..+ ++....+...+..+.++|||||.++...
T Consensus 1315 via~~v---l~~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1315 LVCNCA---LATLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp EEEECC-----------------------CCEEEEEE
T ss_pred EEEccc---ccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence 998543 4444667788899999999999987643
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.019 Score=53.56 Aligned_cols=90 Identities=21% Similarity=0.120 Sum_probs=60.7
Q ss_pred hccCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015534 116 QNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (405)
Q Consensus 116 ~~~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (405)
......+|.+||-+|+|. |.++..+|+ .|+ +|++++ ++ -.+.+++. |. -.++ .|...+ ...+|+
T Consensus 136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~l----Ga---~~v~-~d~~~v---~~g~Dv 202 (315)
T 3goh_A 136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKR----GV---RHLY-REPSQV---TQKYFA 202 (315)
T ss_dssp TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHH----TE---EEEE-SSGGGC---CSCEEE
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHc----CC---CEEE-cCHHHh---CCCccE
Confidence 456678899999999965 788888888 677 999999 88 88888663 32 2233 243333 378999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
|+-.. + . . . +....++|+++|+++..
T Consensus 203 v~d~~-g----~-~---~-~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 203 IFDAV-N----S-Q---N-AAALVPSLKANGHIICI 228 (315)
T ss_dssp EECC-----------------TTGGGEEEEEEEEEE
T ss_pred EEECC-C----c-h---h-HHHHHHHhcCCCEEEEE
Confidence 98421 1 1 1 1 13456899999998753
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.021 Score=54.73 Aligned_cols=99 Identities=22% Similarity=0.210 Sum_probs=64.9
Q ss_pred HHhccCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcc--cccc-----
Q 015534 114 IYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK--IEEI----- 183 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d--~~~~----- 183 (405)
+.......++.+||-+|+|. |.++..+|+ .|+.+|+++|.++ -++.|++ .|.. .++... -.++
T Consensus 185 l~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~i~ 257 (378)
T 3uko_A 185 VWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK----FGVN---EFVNPKDHDKPIQEVIV 257 (378)
T ss_dssp HHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT----TTCC---EEECGGGCSSCHHHHHH
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---EEEccccCchhHHHHHH
Confidence 33445678899999999975 788888888 6888999999999 8887764 3432 223221 1111
Q ss_pred cCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCC-cEEEec
Q 015534 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVLPD 228 (405)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lip~ 228 (405)
....+.+|+|+-.. + . +..+....++|++| |+++..
T Consensus 258 ~~~~gg~D~vid~~-g-------~-~~~~~~~~~~l~~g~G~iv~~ 294 (378)
T 3uko_A 258 DLTDGGVDYSFECI-G-------N-VSVMRAALECCHKGWGTSVIV 294 (378)
T ss_dssp HHTTSCBSEEEECS-C-------C-HHHHHHHHHTBCTTTCEEEEC
T ss_pred HhcCCCCCEEEECC-C-------C-HHHHHHHHHHhhccCCEEEEE
Confidence 01224799998532 1 1 23456666899996 998743
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.063 Score=51.19 Aligned_cols=96 Identities=22% Similarity=0.252 Sum_probs=62.9
Q ss_pred hccCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcc-----ccc-cc-C
Q 015534 116 QNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK-----IEE-IE-L 185 (405)
Q Consensus 116 ~~~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d-----~~~-~~-~ 185 (405)
......++.+||-+|+|. |.++..+|+ .|+.+|+++|.++ -++.+++. |.. .++... +.+ +. .
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~v~~~ 256 (373)
T 2fzw_A 184 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT---ECINPQDFSKPIQEVLIEM 256 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS---EEECGGGCSSCHHHHHHHH
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc---eEeccccccccHHHHHHHH
Confidence 345677899999999876 777778887 6777999999999 88887653 432 222211 111 10 1
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCC-cEEEe
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVLP 227 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lip 227 (405)
..+.+|+|+-.. + . ...+....++|+++ |+++.
T Consensus 257 ~~~g~D~vid~~-g----~----~~~~~~~~~~l~~~~G~iv~ 290 (373)
T 2fzw_A 257 TDGGVDYSFECI-G----N----VKVMRAALEACHKGWGVSVV 290 (373)
T ss_dssp TTSCBSEEEECS-C----C----HHHHHHHHHTBCTTTCEEEE
T ss_pred hCCCCCEEEECC-C----c----HHHHHHHHHhhccCCcEEEE
Confidence 124799998532 1 1 23455666899999 99874
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.028 Score=53.12 Aligned_cols=90 Identities=21% Similarity=0.114 Sum_probs=62.2
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 194 (405)
....+|.+||-+|+|. |.++..+++ .|+ +|+++|.++ -++.+++ .|.. .++ .+...+ . ..+|+|+
T Consensus 172 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~v~-~~~~~~--~-~~~D~vi 239 (348)
T 3two_A 172 SKVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALS----MGVK---HFY-TDPKQC--K-EELDFII 239 (348)
T ss_dssp TTCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHH----TTCS---EEE-SSGGGC--C-SCEEEEE
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHh----cCCC---eec-CCHHHH--h-cCCCEEE
Confidence 3678899999999986 788888888 677 999999999 8887765 3432 222 443333 2 3899998
Q ss_pred EccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
-.. + ... .+....++|+|+|+++..
T Consensus 240 d~~-g----~~~----~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 240 STI-P----THY----DLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp ECC-C----SCC----CHHHHHTTEEEEEEEEEC
T ss_pred ECC-C----cHH----HHHHHHHHHhcCCEEEEE
Confidence 532 1 111 234455899999998853
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.056 Score=51.61 Aligned_cols=96 Identities=21% Similarity=0.173 Sum_probs=63.1
Q ss_pred hccCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcc-----ccc-c-cC
Q 015534 116 QNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK-----IEE-I-EL 185 (405)
Q Consensus 116 ~~~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d-----~~~-~-~~ 185 (405)
......++.+||-+|+|. |.++..+|+ .|+.+|+++|.++ -++.+++ .|.. .++..+ +.+ + ..
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~i~~~ 257 (373)
T 1p0f_A 185 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGAT---ECLNPKDYDKPIYEVICEK 257 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc---EEEecccccchHHHHHHHH
Confidence 345677899999999876 777888887 6777999999999 8887764 3432 222211 111 1 01
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCC-cEEEe
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVLP 227 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lip 227 (405)
..+.+|+|+-.. + . ...+....++|+++ |+++.
T Consensus 258 t~gg~Dvvid~~-g----~----~~~~~~~~~~l~~~~G~iv~ 291 (373)
T 1p0f_A 258 TNGGVDYAVECA-G----R----IETMMNALQSTYCGSGVTVV 291 (373)
T ss_dssp TTSCBSEEEECS-C----C----HHHHHHHHHTBCTTTCEEEE
T ss_pred hCCCCCEEEECC-C----C----HHHHHHHHHHHhcCCCEEEE
Confidence 124799998532 1 1 23455666899999 99874
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.024 Score=54.06 Aligned_cols=96 Identities=22% Similarity=0.169 Sum_probs=62.7
Q ss_pred HHhccCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc------
Q 015534 114 IYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------ 184 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------ 184 (405)
+.......+|.+||-+|+|. |.++..+++ .|+ +|+++|.++ -++.+++. |.. .++..+..++.
T Consensus 181 l~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~v~~~ 252 (363)
T 3uog_A 181 LVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFAL----GAD---HGINRLEEDWVERVYAL 252 (363)
T ss_dssp HTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHH
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHHc----CCC---EEEcCCcccHHHHHHHH
Confidence 33445678899999999876 778888888 677 999999998 88877653 432 22322211211
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.....+|+|+-.. + .. .+....++|+|+|+++.
T Consensus 253 ~~g~g~D~vid~~-g-----~~----~~~~~~~~l~~~G~iv~ 285 (363)
T 3uog_A 253 TGDRGADHILEIA-G-----GA----GLGQSLKAVAPDGRISV 285 (363)
T ss_dssp HTTCCEEEEEEET-T-----SS----CHHHHHHHEEEEEEEEE
T ss_pred hCCCCceEEEECC-C-----hH----HHHHHHHHhhcCCEEEE
Confidence 1224799998632 1 11 23445578999999874
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.057 Score=51.53 Aligned_cols=97 Identities=19% Similarity=0.181 Sum_probs=63.0
Q ss_pred hccCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccc--cccc-----C
Q 015534 116 QNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI--EEIE-----L 185 (405)
Q Consensus 116 ~~~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~--~~~~-----~ 185 (405)
......++.+||-+|+|. |.++..+|+ .|+.+|+++|.++ -++.+++ .|.. .++...- .++. .
T Consensus 186 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~~ 258 (374)
T 1cdo_A 186 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGAT---DFVNPNDHSEPISQVLSKM 258 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCC---EEECGGGCSSCHHHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCc---eEEeccccchhHHHHHHHH
Confidence 345677899999999875 777888887 6777999999999 8887764 3432 2222110 1110 1
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCC-cEEEec
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVLPD 228 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lip~ 228 (405)
..+.+|+|+-.. + . ...+....++|+++ |+++..
T Consensus 259 ~~~g~D~vid~~-g----~----~~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 259 TNGGVDFSLECV-G----N----VGVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp HTSCBSEEEECS-C----C----HHHHHHHHHTBCTTTCEEEEC
T ss_pred hCCCCCEEEECC-C----C----HHHHHHHHHHhhcCCcEEEEE
Confidence 124799998532 1 1 23455666899999 998743
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.021 Score=49.18 Aligned_cols=95 Identities=20% Similarity=0.205 Sum_probs=57.9
Q ss_pred hccCCCCCCEEEEEcC--CCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc----c--C
Q 015534 116 QNKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI----E--L 185 (405)
Q Consensus 116 ~~~~~~~~~~VLDiGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~--~ 185 (405)
......++++||..|+ |.|.....+++ .|+ +|+++|.++ ..+.+++ .+.. . ++..+-.+. . .
T Consensus 32 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g~~--~-~~d~~~~~~~~~~~~~~ 103 (198)
T 1pqw_A 32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSR----LGVE--Y-VGDSRSVDFADEILELT 103 (198)
T ss_dssp TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHT----TCCS--E-EEETTCSTHHHHHHHHT
T ss_pred HHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC--E-EeeCCcHHHHHHHHHHh
Confidence 3346678999999995 33555555555 676 899999998 7766643 3431 1 221111111 0 1
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
....+|+|+... + . ..+....+.|+|||+++.-
T Consensus 104 ~~~~~D~vi~~~-g-----~----~~~~~~~~~l~~~G~~v~~ 136 (198)
T 1pqw_A 104 DGYGVDVVLNSL-A-----G----EAIQRGVQILAPGGRFIEL 136 (198)
T ss_dssp TTCCEEEEEECC-C-----T----HHHHHHHHTEEEEEEEEEC
T ss_pred CCCCCeEEEECC-c-----h----HHHHHHHHHhccCCEEEEE
Confidence 224699999642 1 1 2355666899999998743
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.037 Score=49.99 Aligned_cols=103 Identities=17% Similarity=0.229 Sum_probs=69.5
Q ss_pred CCEEEEEcCCCcHHHHHHHHc--------CCCeEEEEechH-HH------------------------HHHHHHH-----
Q 015534 123 DKVVLDVGAGTGILSLFCAKA--------GAAHVYAVECSQ-MA------------------------NMAKQIV----- 164 (405)
Q Consensus 123 ~~~VLDiGcG~G~l~~~la~~--------g~~~V~~vD~s~-~~------------------------~~a~~~~----- 164 (405)
+..|+|+|+-.|..+..++.. ...+|+++|.-+ +- +..++.+
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 348999999999888776652 247999999322 11 1122222
Q ss_pred -HHcCC-CCcEEEEEccccccc------CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCc
Q 015534 165 -EANGF-SNVITVLKGKIEEIE------LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 165 -~~~~~-~~~i~~~~~d~~~~~------~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
...+. .++|+++.+++.+.. .+.+++|+|..+. + .+ ......+..+...|+|||+|++...
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~-D---~Y-~~t~~~le~~~p~l~~GGvIv~DD~ 218 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDL-D---LY-EPTKAVLEAIRPYLTKGSIVAFDEL 218 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECC-C---CH-HHHHHHHHHHGGGEEEEEEEEESST
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcC-c---cc-chHHHHHHHHHHHhCCCcEEEEcCC
Confidence 12344 478999999997752 2345799999864 2 12 2344677888899999999998774
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=95.35 E-value=0.071 Score=50.88 Aligned_cols=96 Identities=20% Similarity=0.254 Sum_probs=62.3
Q ss_pred hccCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcc-----ccc-c-cC
Q 015534 116 QNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK-----IEE-I-EL 185 (405)
Q Consensus 116 ~~~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d-----~~~-~-~~ 185 (405)
......++.+||-+|+|. |.++..+++ .|+.+|+++|.++ -++.+++ .|.. .++..+ +.+ + ..
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~~ 257 (374)
T 2jhf_A 185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGAT---ECVNPQDYKKPIQEVLTEM 257 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc---eEecccccchhHHHHHHHH
Confidence 345677899999999876 777778887 6777899999999 8887764 3432 222211 111 1 01
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCC-cEEEe
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVLP 227 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lip 227 (405)
..+.+|+|+-.. + . ...+....++|+++ |+++.
T Consensus 258 ~~~g~D~vid~~-g----~----~~~~~~~~~~l~~~~G~iv~ 291 (374)
T 2jhf_A 258 SNGGVDFSFEVI-G----R----LDTMVTALSCCQEAYGVSVI 291 (374)
T ss_dssp TTSCBSEEEECS-C----C----HHHHHHHHHHBCTTTCEEEE
T ss_pred hCCCCcEEEECC-C----C----HHHHHHHHHHhhcCCcEEEE
Confidence 124799998532 1 1 23345566889999 99874
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.33 E-value=0.026 Score=54.52 Aligned_cols=102 Identities=22% Similarity=0.114 Sum_probs=64.6
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc-----cc--CCC
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-----IE--LPV 187 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-----~~--~~~ 187 (405)
....+|.+||-+|+|. |.++..+|+ .|+.+|+++|.++ -++.|++ .|. +++...-.+ +. ...
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lGa----~~i~~~~~~~~~~~v~~~t~g 252 (398)
T 1kol_A 181 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGF----EIADLSLDTPLHEQIAALLGE 252 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC----EEEETTSSSCHHHHHHHHHSS
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cCC----cEEccCCcchHHHHHHHHhCC
Confidence 4677899999999877 888888888 6777899999999 8888764 343 223221111 11 122
Q ss_pred CceeEEEEccccccc------cChhhHHHHHHHHHhcccCCcEEEe
Q 015534 188 TKVDIIISEWMGYFL------LFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l------~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
..+|+|+-..-.... .+.......+....++|++||+++.
T Consensus 253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~ 298 (398)
T 1kol_A 253 PEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGI 298 (398)
T ss_dssp SCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEE
T ss_pred CCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEE
Confidence 479999863211000 0001122356666789999999874
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.048 Score=51.30 Aligned_cols=95 Identities=14% Similarity=0.121 Sum_probs=63.1
Q ss_pred ccCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCc
Q 015534 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTK 189 (405)
Q Consensus 117 ~~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~ 189 (405)
.....++.+||-+|+|. |.++..+++ .|+ +|+++|.++ -++.+++ .|.. .++..+-.++. ...+.
T Consensus 161 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~~i~~~~~~~~~~~~~~~g~ 232 (340)
T 3s2e_A 161 VTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARR----LGAE---VAVNARDTDPAAWLQKEIGG 232 (340)
T ss_dssp TTTCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHSS
T ss_pred HcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH----cCCC---EEEeCCCcCHHHHHHHhCCC
Confidence 34678899999999986 888888888 677 999999999 8887765 3432 22222111110 01136
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+|+|+-... . ...+....++|+|+|+++..
T Consensus 233 ~d~vid~~g-----~----~~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 233 AHGVLVTAV-----S----PKAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp EEEEEESSC-----C----HHHHHHHHHHEEEEEEEEEC
T ss_pred CCEEEEeCC-----C----HHHHHHHHHHhccCCEEEEe
Confidence 899985321 1 23455666889999998754
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.037 Score=52.72 Aligned_cols=91 Identities=18% Similarity=0.176 Sum_probs=60.0
Q ss_pred CCCEEEEEc-CCC-cHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcc--cc-cc-cCCCCceeEE
Q 015534 122 KDKVVLDVG-AGT-GILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK--IE-EI-ELPVTKVDII 193 (405)
Q Consensus 122 ~~~~VLDiG-cG~-G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d--~~-~~-~~~~~~~D~I 193 (405)
++.+||-+| +|. |.++..+|+. +..+|+++|.++ -++.+++ .|.. .++... .. .+ ....+.+|+|
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad---~vi~~~~~~~~~v~~~~~~g~Dvv 243 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAH---HVIDHSKPLAAEVAALGLGAPAFV 243 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCS---EEECTTSCHHHHHHTTCSCCEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCC---EEEeCCCCHHHHHHHhcCCCceEE
Confidence 788999999 554 8889999985 666999999998 8887765 3432 222211 11 11 1223589999
Q ss_pred EEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+-.. .-...+....++|+++|+++..
T Consensus 244 id~~---------g~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 244 FSTT---------HTDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp EECS---------CHHHHHHHHHHHSCTTCEEEEC
T ss_pred EECC---------CchhhHHHHHHHhcCCCEEEEE
Confidence 8532 1123456666899999998854
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.064 Score=51.22 Aligned_cols=97 Identities=22% Similarity=0.228 Sum_probs=62.9
Q ss_pred hccCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcc-----ccc-cc-C
Q 015534 116 QNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK-----IEE-IE-L 185 (405)
Q Consensus 116 ~~~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d-----~~~-~~-~ 185 (405)
......++.+||-+|+|. |.++..+|+ .|+.+|+++|.++ -++.+++ .|.. .++..+ +.+ +. .
T Consensus 189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~v~~~ 261 (376)
T 1e3i_A 189 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT---DCLNPRELDKPVQDVITEL 261 (376)
T ss_dssp TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc---EEEccccccchHHHHHHHH
Confidence 345677899999999875 777888887 6777999999999 8887764 3432 222211 111 10 1
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCC-cEEEec
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVLPD 228 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lip~ 228 (405)
..+.+|+|+-.. + . ...+....++|+++ |+++..
T Consensus 262 ~~~g~Dvvid~~-G----~----~~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 262 TAGGVDYSLDCA-G----T----AQTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp HTSCBSEEEESS-C----C----HHHHHHHHHTBCTTTCEEEEC
T ss_pred hCCCccEEEECC-C----C----HHHHHHHHHHhhcCCCEEEEE
Confidence 124799998532 1 1 23455666899999 998743
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.031 Score=52.46 Aligned_cols=67 Identities=27% Similarity=0.244 Sum_probs=54.1
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC-CCceeEEEEcc
Q 015534 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEW 197 (405)
Q Consensus 124 ~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~ 197 (405)
.+|||+-||.|.+++-+-++|...|.++|+++ +++.-+.+. + -+++.+|+.++... -..+|+|+..+
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~-----~--~~~~~~DI~~i~~~~~~~~D~l~ggp 69 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSDEFPKCDGIIGGP 69 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHC-----C--SEEEESCGGGCCGGGSCCCSEEECCC
T ss_pred CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC-----C--CCcccCChhhCCHhhCCcccEEEecC
Confidence 37999999999999999999998899999999 888777653 2 25788999887532 24799999753
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.065 Score=50.44 Aligned_cols=97 Identities=16% Similarity=0.068 Sum_probs=61.9
Q ss_pred HHhccCCCCCCEEEEEcCCC--cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----
Q 015534 114 IYQNKFLFKDKVVLDVGAGT--GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----- 184 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~--G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----- 184 (405)
+.......+|.+||-+|+|. |.++..+++ .|+ +|+++|.++ -++.+++. |.. .++...-.++.
T Consensus 136 ~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~l----ga~---~~~~~~~~~~~~~~~~ 207 (340)
T 3gms_A 136 CTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRL----GAA---YVIDTSTAPLYETVME 207 (340)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----TCS---EEEETTTSCHHHHHHH
T ss_pred HHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhC----CCc---EEEeCCcccHHHHHHH
Confidence 33446678899999999984 677777777 677 999999999 88887763 321 22222111111
Q ss_pred -CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 185 -~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.....+|+|+... + ... ... ..++|+++|+++..
T Consensus 208 ~~~~~g~Dvvid~~-g-----~~~---~~~-~~~~l~~~G~iv~~ 242 (340)
T 3gms_A 208 LTNGIGADAAIDSI-G-----GPD---GNE-LAFSLRPNGHFLTI 242 (340)
T ss_dssp HTTTSCEEEEEESS-C-----HHH---HHH-HHHTEEEEEEEEEC
T ss_pred HhCCCCCcEEEECC-C-----Chh---HHH-HHHHhcCCCEEEEE
Confidence 1234799998632 1 111 222 23789999998753
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.018 Score=54.20 Aligned_cols=68 Identities=9% Similarity=0.091 Sum_probs=53.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCC--CeE-EEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC---CCCceeEEEE
Q 015534 123 DKVVLDVGAGTGILSLFCAKAGA--AHV-YAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---PVTKVDIIIS 195 (405)
Q Consensus 123 ~~~VLDiGcG~G~l~~~la~~g~--~~V-~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~D~Iv~ 195 (405)
..+|+|+.||.|.+++.+.++|. ..| .++|+++ .++..+.++.. . ++.+|+.++.. +...+|+++.
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-----~--~~~~DI~~~~~~~i~~~~~Dil~g 82 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-----E--VQVKNLDSISIKQIESLNCNTWFM 82 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-----C--CBCCCTTTCCHHHHHHTCCCEEEE
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-----C--cccCChhhcCHHHhccCCCCEEEe
Confidence 45899999999999999999984 677 8999999 88888877632 1 56788877642 2236999998
Q ss_pred cc
Q 015534 196 EW 197 (405)
Q Consensus 196 ~~ 197 (405)
.+
T Consensus 83 gp 84 (327)
T 3qv2_A 83 SP 84 (327)
T ss_dssp CC
T ss_pred cC
Confidence 54
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.042 Score=50.81 Aligned_cols=71 Identities=15% Similarity=0.077 Sum_probs=55.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCe--EEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC----CCceeEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAH--VYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP----VTKVDII 193 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~--V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~----~~~~D~I 193 (405)
..+.+|+|+-||.|.+++.+.++|... |.++|+++ .++..+.+.. ...++.+|+.++... .+.+|+|
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~------~~~~~~~DI~~i~~~~i~~~~~~Dll 87 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ------GKIMYVGDVRSVTQKHIQEWGPFDLV 87 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT------TCEEEECCGGGCCHHHHHHTCCCSEE
T ss_pred CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC------CCceeCCChHHccHHHhcccCCcCEE
Confidence 455699999999999999999999866 79999999 8777665532 246788999887521 1369999
Q ss_pred EEcc
Q 015534 194 ISEW 197 (405)
Q Consensus 194 v~~~ 197 (405)
+..+
T Consensus 88 ~ggp 91 (295)
T 2qrv_A 88 IGGS 91 (295)
T ss_dssp EECC
T ss_pred EecC
Confidence 9853
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.015 Score=54.81 Aligned_cols=68 Identities=19% Similarity=0.226 Sum_probs=53.0
Q ss_pred CEEEEEcCCCcHHHHHHHHcCC--CeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC---CCCceeEEEEcc
Q 015534 124 KVVLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---PVTKVDIIISEW 197 (405)
Q Consensus 124 ~~VLDiGcG~G~l~~~la~~g~--~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~D~Iv~~~ 197 (405)
.+++|+-||.|.+++.+.++|. ..|.++|+++ .++.-+.++.. ..++.+|+.++.. +...+|+++..+
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~------~~~~~~DI~~~~~~~~~~~~~D~l~ggp 77 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE------TNLLNRNIQQLTPQVIKKWNVDTILMSP 77 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECCCGGGCCHHHHHHTTCCEEEECC
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC------CceeccccccCCHHHhccCCCCEEEecC
Confidence 4799999999999999999886 6789999999 88777766532 3467889887752 223699999754
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.033 Score=57.90 Aligned_cols=107 Identities=12% Similarity=0.040 Sum_probs=67.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc----------C---CCeEEEEechH-HHHHHHHH--------------HHHcC-----
Q 015534 122 KDKVVLDVGAGTGILSLFCAKA----------G---AAHVYAVECSQ-MANMAKQI--------------VEANG----- 168 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~----------g---~~~V~~vD~s~-~~~~a~~~--------------~~~~~----- 168 (405)
+.-+|||+|.|+|...+.+.+. . ..+++++|..| ..+.+++. +....
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 4469999999999876666552 1 14799999965 44444432 22221
Q ss_pred -----CC---CcEEEEEccccccc--CC---CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 169 -----FS---NVITVLKGKIEEIE--LP---VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 169 -----~~---~~i~~~~~d~~~~~--~~---~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+. -.++++.+|+.+.. +. ...+|.++.+.+...-..+--...++..+.++++|||.+...
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~ 210 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTF 210 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEES
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEec
Confidence 11 14678888886643 21 368999998764322212222367888899999999988643
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.93 E-value=0.0037 Score=58.80 Aligned_cols=61 Identities=15% Similarity=0.137 Sum_probs=48.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (405)
..+|..|||.-||+|..+..+.+.|. +.+|+|+++ .++.+++++...+.. ...+..|+.++
T Consensus 250 ~~~~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~i 311 (323)
T 1boo_A 250 TEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDNNIS--EEKITDIYNRI 311 (323)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCSCSC--HHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHhcccc--hHHHHHHHHHH
Confidence 46889999999999999999999865 999999999 999999988766542 34444454444
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.034 Score=52.44 Aligned_cols=94 Identities=17% Similarity=0.215 Sum_probs=62.7
Q ss_pred CCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccc--cc-cc--CCCCce
Q 015534 119 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI--EE-IE--LPVTKV 190 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~--~~-~~--~~~~~~ 190 (405)
...++.+||-+|+|. |.++..+++ .|..+|+++|.++ -++.+++ .|.. .++..+- .+ +. .....+
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa~---~~i~~~~~~~~~v~~~t~g~g~ 240 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGAD---AAVKSGAGAADAIRELTGGQGA 240 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTCS---EEEECSTTHHHHHHHHHGGGCE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC---EEEcCCCcHHHHHHHHhCCCCC
Confidence 567899999999976 788888888 5667999999999 8887765 3432 2222211 11 00 112479
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
|+|+-.. + . +..+....++|+++|+++..
T Consensus 241 d~v~d~~-G----~----~~~~~~~~~~l~~~G~iv~~ 269 (345)
T 3jv7_A 241 TAVFDFV-G----A----QSTIDTAQQVVAVDGHISVV 269 (345)
T ss_dssp EEEEESS-C----C----HHHHHHHHHHEEEEEEEEEC
T ss_pred eEEEECC-C----C----HHHHHHHHHHHhcCCEEEEE
Confidence 9998532 1 1 23456666889999998754
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.85 E-value=0.052 Score=52.04 Aligned_cols=95 Identities=25% Similarity=0.311 Sum_probs=61.3
Q ss_pred cC-CCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcc---ccc----cc--
Q 015534 118 KF-LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK---IEE----IE-- 184 (405)
Q Consensus 118 ~~-~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d---~~~----~~-- 184 (405)
.. ..+|.+||-+|+|. |.++..+|+ .|+.+|++++.++ -++.+++ .|.. .++..+ -.+ +.
T Consensus 190 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~v~~~ 262 (380)
T 1vj0_A 190 YPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGAD---LTLNRRETSVEERRKAIMDI 262 (380)
T ss_dssp CSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHHH
T ss_pred cCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----cCCc---EEEeccccCcchHHHHHHHH
Confidence 45 67899999999775 777888887 6756999999998 8877764 3432 233322 111 11
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.....+|+|+-.. + .. ..+....++|+++|+++..
T Consensus 263 ~~g~g~Dvvid~~-g----~~----~~~~~~~~~l~~~G~iv~~ 297 (380)
T 1vj0_A 263 THGRGADFILEAT-G----DS----RALLEGSELLRRGGFYSVA 297 (380)
T ss_dssp TTTSCEEEEEECS-S----CT----THHHHHHHHEEEEEEEEEC
T ss_pred hCCCCCcEEEECC-C----CH----HHHHHHHHHHhcCCEEEEE
Confidence 1223799998532 1 11 2344556889999998743
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.092 Score=49.54 Aligned_cols=95 Identities=27% Similarity=0.262 Sum_probs=60.9
Q ss_pred ccCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc------CCC
Q 015534 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPV 187 (405)
Q Consensus 117 ~~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~ 187 (405)
.... ++.+||-+|+|. |.++..+++ .|+.+|+++|.++ -++.+++. |. + .++..+-.++. ...
T Consensus 163 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~----Ga-~--~~~~~~~~~~~~~v~~~~~g 234 (348)
T 2d8a_A 163 AGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV----GA-D--YVINPFEEDVVKEVMDITDG 234 (348)
T ss_dssp TSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH----TC-S--EEECTTTSCHHHHHHHHTTT
T ss_pred hcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CC-C--EEECCCCcCHHHHHHHHcCC
Confidence 3455 899999999964 677777777 6776999999998 88877643 32 1 12222111110 122
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
..+|+|+... + . ...+....++|+++|+++..
T Consensus 235 ~g~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~~ 266 (348)
T 2d8a_A 235 NGVDVFLEFS-G----A----PKALEQGLQAVTPAGRVSLL 266 (348)
T ss_dssp SCEEEEEECS-C----C----HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCEEEECC-C----C----HHHHHHHHHHHhcCCEEEEE
Confidence 4699998632 1 1 23455566889999998743
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.81 E-value=0.023 Score=54.30 Aligned_cols=93 Identities=25% Similarity=0.228 Sum_probs=60.6
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc-c-cCCCCceeE
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I-ELPVTKVDI 192 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~D~ 192 (405)
....+|.+||-+|+|. |.++..+|+ .|+ +|+++|.++ -++.+++. |. + .++...-.+ . ... +.+|+
T Consensus 190 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~l----Ga-~--~vi~~~~~~~~~~~~-~g~Dv 260 (369)
T 1uuf_A 190 WQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKAL----GA-D--EVVNSRNADEMAAHL-KSFDF 260 (369)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH----TC-S--EEEETTCHHHHHTTT-TCEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CC-c--EEeccccHHHHHHhh-cCCCE
Confidence 3567899999999986 788888888 666 799999999 88887752 33 1 222221111 1 122 57999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
|+... + ... .+....+.|+++|+++..
T Consensus 261 vid~~-g----~~~----~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 261 ILNTV-A----APH----NLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp EEECC-S----SCC----CHHHHHTTEEEEEEEEEC
T ss_pred EEECC-C----CHH----HHHHHHHHhccCCEEEEe
Confidence 98632 1 111 234455889999998753
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.81 E-value=0.044 Score=51.90 Aligned_cols=94 Identities=23% Similarity=0.208 Sum_probs=60.6
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccc-cc----cc--CC-
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI-EE----IE--LP- 186 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~-~~----~~--~~- 186 (405)
....++.+||-+|+|. |.++..+++ .|+ +|+++|.++ -++.+++ .|.. .++..+- .+ +. ..
T Consensus 164 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~~~~~~~~~~~~~~i~~~~~~ 235 (352)
T 1e3j_A 164 AGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKN----CGAD---VTLVVDPAKEEESSIIERIRS 235 (352)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCS---EEEECCTTTSCHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCC---EEEcCcccccHHHHHHHHhcc
Confidence 4567899999999875 777778887 677 599999999 8877764 3432 2222110 11 10 11
Q ss_pred --CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 187 --VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 187 --~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
...+|+|+... + . ...+....++|+++|+++..
T Consensus 236 ~~g~g~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 236 AIGDLPNVTIDCS-G----N----EKCITIGINITRTGGTLMLV 270 (352)
T ss_dssp HSSSCCSEEEECS-C----C----HHHHHHHHHHSCTTCEEEEC
T ss_pred ccCCCCCEEEECC-C----C----HHHHHHHHHHHhcCCEEEEE
Confidence 24699998632 1 1 12345556889999998743
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.15 Score=41.08 Aligned_cols=88 Identities=16% Similarity=0.136 Sum_probs=54.5
Q ss_pred CEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEEc
Q 015534 124 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIISE 196 (405)
Q Consensus 124 ~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv~~ 196 (405)
.+|+-+|||. | .++..|.+.|. .|+++|.++ .++.+++ .+ +.++.+|..+.. .....+|+|++.
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~----~g----~~~i~gd~~~~~~l~~a~i~~ad~vi~~ 78 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRE----RG----VRAVLGNAANEEIMQLAHLECAKWLILT 78 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH----TT----CEEEESCTTSHHHHHHTTGGGCSEEEEC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH----cC----CCEEECCCCCHHHHHhcCcccCCEEEEE
Confidence 4789999876 4 33444445666 999999999 8776654 23 577888886542 123679999863
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
.- . ......+-...+.+.|+..++
T Consensus 79 ~~-----~-~~~n~~~~~~a~~~~~~~~ii 102 (140)
T 3fwz_A 79 IP-----N-GYEAGEIVASARAKNPDIEII 102 (140)
T ss_dssp CS-----C-HHHHHHHHHHHHHHCSSSEEE
T ss_pred CC-----C-hHHHHHHHHHHHHHCCCCeEE
Confidence 21 1 111222223445667777665
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.056 Score=50.64 Aligned_cols=98 Identities=19% Similarity=0.103 Sum_probs=60.0
Q ss_pred HHhccCCCCCCEEEEEcC--CCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----
Q 015534 114 IYQNKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----- 184 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----- 184 (405)
+.......++++||..|+ |.|..+..+++ .|+ +|+++|.++ .++.+++ .+.. ..+-..+..++.
T Consensus 137 l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g~~--~~~d~~~~~~~~~~~~~ 209 (333)
T 1v3u_A 137 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQ----IGFD--AAFNYKTVNSLEEALKK 209 (333)
T ss_dssp HHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS--EEEETTSCSCHHHHHHH
T ss_pred HHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCCc--EEEecCCHHHHHHHHHH
Confidence 334456778999999998 44566666665 677 999999998 7777643 2321 222111101110
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
...+.+|+++... + . ..+....++|++||+++..
T Consensus 210 ~~~~~~d~vi~~~-g-------~--~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 210 ASPDGYDCYFDNV-G-------G--EFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp HCTTCEEEEEESS-C-------H--HHHHHHHTTEEEEEEEEEC
T ss_pred HhCCCCeEEEECC-C-------h--HHHHHHHHHHhcCCEEEEE
Confidence 1125799999743 1 1 1355666899999998743
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.082 Score=49.56 Aligned_cols=99 Identities=14% Similarity=0.133 Sum_probs=62.5
Q ss_pred HHHhccCCCCCCEEEEEcC--CCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----
Q 015534 113 VIYQNKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---- 184 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---- 184 (405)
++.......++.+||-+|+ |.|..+..+++ .|+ +|++++.++ -++.+.+ ..|.. .++...-.++.
T Consensus 140 al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~---~~g~~---~~~~~~~~~~~~~~~ 212 (336)
T 4b7c_A 140 ALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLVE---ELGFD---GAIDYKNEDLAAGLK 212 (336)
T ss_dssp HHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH---TTCCS---EEEETTTSCHHHHHH
T ss_pred HHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH---HcCCC---EEEECCCHHHHHHHH
Confidence 3434466789999999998 34677777777 677 999999998 7776622 23431 12221111110
Q ss_pred -CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 185 -~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
...+.+|+|+... + . ..+....+.|+++|+++..
T Consensus 213 ~~~~~~~d~vi~~~-g-------~--~~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 213 RECPKGIDVFFDNV-G-------G--EILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp HHCTTCEEEEEESS-C-------H--HHHHHHHTTEEEEEEEEEC
T ss_pred HhcCCCceEEEECC-C-------c--chHHHHHHHHhhCCEEEEE
Confidence 1125799998632 1 1 2456667899999998743
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.13 Score=48.32 Aligned_cols=95 Identities=21% Similarity=0.210 Sum_probs=61.4
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc---c---CCCC
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI---E---LPVT 188 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~---~~~~ 188 (405)
....++.+||-.|+|. |.++..+++ .|+..++++|.++ -++.|++ .|.. .++..+-.+. . ....
T Consensus 156 ~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~----lGa~---~~i~~~~~~~~~~~~~~~~~~ 228 (346)
T 4a2c_A 156 AQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS----FGAM---QTFNSSEMSAPQMQSVLRELR 228 (346)
T ss_dssp TTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHGGGC
T ss_pred hccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH----cCCe---EEEeCCCCCHHHHHHhhcccC
Confidence 5667899999999986 566777777 7888899999999 8887765 3432 2232221111 0 1124
Q ss_pred ceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.+|+|+... + . ...+....++|++||.++..
T Consensus 229 g~d~v~d~~-G----~----~~~~~~~~~~l~~~G~~v~~ 259 (346)
T 4a2c_A 229 FNQLILETA-G----V----PQTVELAVEIAGPHAQLALV 259 (346)
T ss_dssp SSEEEEECS-C----S----HHHHHHHHHHCCTTCEEEEC
T ss_pred Ccccccccc-c----c----cchhhhhhheecCCeEEEEE
Confidence 578887521 1 1 23455566889999998743
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.091 Score=49.50 Aligned_cols=97 Identities=26% Similarity=0.270 Sum_probs=63.3
Q ss_pred HHHhccCCCCCCEEEEEcC--CCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----
Q 015534 113 VIYQNKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---- 184 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---- 184 (405)
++.......+|.+||-+|+ |.|.++..+++ .|+ +|++++.++ -++.+++. |. + .++..+ .++.
T Consensus 150 ~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----ga-~--~v~~~~-~~~~~~v~ 220 (342)
T 4eye_A 150 AYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSV----GA-D--IVLPLE-EGWAKAVR 220 (342)
T ss_dssp HHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH----TC-S--EEEESS-TTHHHHHH
T ss_pred HHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CC-c--EEecCc-hhHHHHHH
Confidence 3434456788999999997 34777877877 677 999999998 88877763 32 2 223322 2211
Q ss_pred --CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 185 --LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 185 --~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.....+|+|+... + . . .+....+.|+++|+++..
T Consensus 221 ~~~~~~g~Dvvid~~-g----~-~----~~~~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 221 EATGGAGVDMVVDPI-G----G-P----AFDDAVRTLASEGRLLVV 256 (342)
T ss_dssp HHTTTSCEEEEEESC-C-----------CHHHHHHTEEEEEEEEEC
T ss_pred HHhCCCCceEEEECC-c----h-h----HHHHHHHhhcCCCEEEEE
Confidence 2224799999642 1 1 1 344556889999998854
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.1 Score=48.63 Aligned_cols=97 Identities=21% Similarity=0.207 Sum_probs=61.8
Q ss_pred HHhccCCCCCCEEEEEcC-C-CcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----
Q 015534 114 IYQNKFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----- 184 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGc-G-~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----- 184 (405)
+.......++.+||-+|+ | .|..+..+++ .|+ +|++++.++ -++.+++. |. + .++..+-.++.
T Consensus 132 l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----Ga-~--~~~~~~~~~~~~~~~~ 203 (325)
T 3jyn_A 132 LRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKAL----GA-W--ETIDYSHEDVAKRVLE 203 (325)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----TC-S--EEEETTTSCHHHHHHH
T ss_pred HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CC-C--EEEeCCCccHHHHHHH
Confidence 334456788999999993 3 4777777777 677 999999999 88877653 32 1 22222211111
Q ss_pred -CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 185 -~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.....+|+|+... + . ..+....++|+++|+++..
T Consensus 204 ~~~~~g~Dvvid~~-g-----~----~~~~~~~~~l~~~G~iv~~ 238 (325)
T 3jyn_A 204 LTDGKKCPVVYDGV-G-----Q----DTWLTSLDSVAPRGLVVSF 238 (325)
T ss_dssp HTTTCCEEEEEESS-C-----G----GGHHHHHTTEEEEEEEEEC
T ss_pred HhCCCCceEEEECC-C-----h----HHHHHHHHHhcCCCEEEEE
Confidence 1225799998642 1 1 1344556899999998753
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.065 Score=50.58 Aligned_cols=89 Identities=20% Similarity=0.273 Sum_probs=57.3
Q ss_pred CCCEEEEEc-CCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcc--ccc-c-cCCCCceeEE
Q 015534 122 KDKVVLDVG-AGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK--IEE-I-ELPVTKVDII 193 (405)
Q Consensus 122 ~~~~VLDiG-cG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d--~~~-~-~~~~~~~D~I 193 (405)
++.+||-+| +|. |.++..+++ .|+ +|++++.++ -++.+++. |. + .++..+ ..+ + ......+|+|
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga-~--~vi~~~~~~~~~~~~~~~~g~Dvv 221 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKKM----GA-D--IVLNHKESLLNQFKTQGIELVDYV 221 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHHH----TC-S--EEECTTSCHHHHHHHHTCCCEEEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CC-c--EEEECCccHHHHHHHhCCCCccEE
Confidence 789999994 554 777777787 677 999999998 88887763 32 1 122211 100 0 0123579999
Q ss_pred EEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+... . -...+....++|+++|+++.
T Consensus 222 ~d~~--------g-~~~~~~~~~~~l~~~G~iv~ 246 (346)
T 3fbg_A 222 FCTF--------N-TDMYYDDMIQLVKPRGHIAT 246 (346)
T ss_dssp EESS--------C-HHHHHHHHHHHEEEEEEEEE
T ss_pred EECC--------C-chHHHHHHHHHhccCCEEEE
Confidence 8632 1 12345566688999999864
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.11 Score=48.80 Aligned_cols=95 Identities=23% Similarity=0.229 Sum_probs=60.5
Q ss_pred hccCCCCCCEEEEEcC--CCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc------C
Q 015534 116 QNKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------L 185 (405)
Q Consensus 116 ~~~~~~~~~~VLDiGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~ 185 (405)
......++.+||-+|+ |.|..+..+++ .|+ +|++++.++ -++.+++ .|. + .++..+-.++. .
T Consensus 142 ~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga-~--~~~~~~~~~~~~~~~~~~ 213 (334)
T 3qwb_A 142 EAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKE----YGA-E--YLINASKEDILRQVLKFT 213 (334)
T ss_dssp TTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTC-S--EEEETTTSCHHHHHHHHT
T ss_pred HhccCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCC-c--EEEeCCCchHHHHHHHHh
Confidence 3346788999999994 34677777777 677 999999998 8777765 342 1 22222211111 1
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
....+|+|+... +. ..+....++|+++|+++..
T Consensus 214 ~~~g~D~vid~~-g~---------~~~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 214 NGKGVDASFDSV-GK---------DTFEISLAALKRKGVFVSF 246 (334)
T ss_dssp TTSCEEEEEECC-GG---------GGHHHHHHHEEEEEEEEEC
T ss_pred CCCCceEEEECC-Ch---------HHHHHHHHHhccCCEEEEE
Confidence 235799998642 11 2344555789999998753
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.027 Score=53.16 Aligned_cols=90 Identities=20% Similarity=0.281 Sum_probs=59.4
Q ss_pred CCCCCCEEEEEcCCC-cHHHHHHHH-c--CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcc-----cccccCCCC
Q 015534 119 FLFKDKVVLDVGAGT-GILSLFCAK-A--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK-----IEEIELPVT 188 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~-G~l~~~la~-~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d-----~~~~~~~~~ 188 (405)
.. ++.+||-+|+|. |.++..+|+ . |+ +|+++|.++ -++.+++. |. + .++..+ ...+. ...
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga-~--~vi~~~~~~~~~~~~~-~g~ 237 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALEL----GA-D--YVSEMKDAESLINKLT-DGL 237 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHHH----TC-S--EEECHHHHHHHHHHHH-TTC
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHHh----CC-C--EEeccccchHHHHHhh-cCC
Confidence 45 899999999975 777888887 6 77 799999998 88887653 32 1 222211 11111 123
Q ss_pred ceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.+|+|+-.. + . +..+....++|+|+|+++.
T Consensus 238 g~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~ 267 (344)
T 2h6e_A 238 GASIAIDLV-G----T----EETTYNLGKLLAQEGAIIL 267 (344)
T ss_dssp CEEEEEESS-C----C----HHHHHHHHHHEEEEEEEEE
T ss_pred CccEEEECC-C----C----hHHHHHHHHHhhcCCEEEE
Confidence 799999632 1 1 2245556688999999874
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.13 Score=48.46 Aligned_cols=93 Identities=19% Similarity=0.123 Sum_probs=59.8
Q ss_pred cCCCCCCEEEEEcC--CCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc----c--CCC
Q 015534 118 KFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI----E--LPV 187 (405)
Q Consensus 118 ~~~~~~~~VLDiGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~--~~~ 187 (405)
....++.+||.+|+ |.|..+..+++ .|+ +|++++.++ .++.+++. |. + .++...-.++ . ...
T Consensus 162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~----ga-~--~~~d~~~~~~~~~~~~~~~~ 233 (343)
T 2eih_A 162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKAL----GA-D--ETVNYTHPDWPKEVRRLTGG 233 (343)
T ss_dssp SCCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TC-S--EEEETTSTTHHHHHHHHTTT
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhc----CC-C--EEEcCCcccHHHHHHHHhCC
Confidence 35678999999998 56777777777 676 999999998 88877642 32 2 1222111111 0 122
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
..+|+|+... + .. .+....+.|+++|+++.-
T Consensus 234 ~~~d~vi~~~-g-----~~----~~~~~~~~l~~~G~~v~~ 264 (343)
T 2eih_A 234 KGADKVVDHT-G-----AL----YFEGVIKATANGGRIAIA 264 (343)
T ss_dssp TCEEEEEESS-C-----SS----SHHHHHHHEEEEEEEEES
T ss_pred CCceEEEECC-C-----HH----HHHHHHHhhccCCEEEEE
Confidence 4799999643 1 11 234455788999998743
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=93.96 E-value=0.011 Score=55.82 Aligned_cols=94 Identities=16% Similarity=0.215 Sum_probs=59.5
Q ss_pred ccCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CCCC
Q 015534 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVT 188 (405)
Q Consensus 117 ~~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~ 188 (405)
.... ++.+||-+|+|. |.++..+++ .|+.+|+++|.++ -++.+++. . + .++..+-.++. ....
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a-----~--~v~~~~~~~~~~~~~~~~~~ 230 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-A-----D--RLVNPLEEDLLEVVRRVTGS 230 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-C-----S--EEECTTTSCHHHHHHHHHSS
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-H-----H--hccCcCccCHHHHHHHhcCC
Confidence 3456 899999999865 677777777 6766899999998 77776553 1 1 12221111110 0125
Q ss_pred ceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.+|+|+... + . ...+....++|+++|+++.-
T Consensus 231 g~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 231 GVEVLLEFS-G----N----EAAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp CEEEEEECS-C----C----HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCEEEECC-C----C----HHHHHHHHHHHhcCCEEEEE
Confidence 799998632 1 1 13345566889999998743
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=93.89 E-value=0.096 Score=49.68 Aligned_cols=94 Identities=19% Similarity=0.163 Sum_probs=59.8
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccc-cc--cCCCCcee
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIE-EI--ELPVTKVD 191 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~-~~--~~~~~~~D 191 (405)
....++.+||-+|+|. |.++..+++ .|+ +|+++|.++ -++.+++. |. + .++..+-. ++ ... +.+|
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~l----Ga-~--~v~~~~~~~~~~~~~~-~~~D 245 (360)
T 1piw_A 175 NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKM----GA-D--HYIATLEEGDWGEKYF-DTFD 245 (360)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----TC-S--EEEEGGGTSCHHHHSC-SCEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHc----CC-C--EEEcCcCchHHHHHhh-cCCC
Confidence 4567899999999865 777777777 677 799999998 88887752 32 2 22322111 11 122 5799
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|+... +.. .. ..+....++|++||+++.
T Consensus 246 ~vid~~-g~~--~~----~~~~~~~~~l~~~G~iv~ 274 (360)
T 1piw_A 246 LIVVCA-SSL--TD----IDFNIMPKAMKVGGRIVS 274 (360)
T ss_dssp EEEECC-SCS--TT----CCTTTGGGGEEEEEEEEE
T ss_pred EEEECC-CCC--cH----HHHHHHHHHhcCCCEEEE
Confidence 998632 110 01 112334578999999874
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.16 Score=52.53 Aligned_cols=107 Identities=20% Similarity=0.132 Sum_probs=65.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-----------C--CCeEEEEec---hH-HHHHH-----------HHHHHHcCCC---
Q 015534 122 KDKVVLDVGAGTGILSLFCAKA-----------G--AAHVYAVEC---SQ-MANMA-----------KQIVEANGFS--- 170 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~-----------g--~~~V~~vD~---s~-~~~~a-----------~~~~~~~~~~--- 170 (405)
+.-+|||+|-|+|...+.+.+. . .-+++++|. ++ .+..+ ++........
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 3459999999999776665442 1 136899998 44 33321 2222222110
Q ss_pred ----------CcEEEEEccccccc--CC---CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 171 ----------NVITVLKGKIEEIE--LP---VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 171 ----------~~i~~~~~d~~~~~--~~---~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
-.+++..+|+.+.. +. ...||+|+.+.+......+---..++..+.++++|||.+...
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~ 218 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATF 218 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEES
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEec
Confidence 12456667775542 11 367999998765432222222357889999999999998754
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=93.70 E-value=0.17 Score=47.56 Aligned_cols=98 Identities=18% Similarity=0.059 Sum_probs=60.8
Q ss_pred HHhccCCCCCCEEEEEcC--CCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----
Q 015534 114 IYQNKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----- 184 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----- 184 (405)
+.......++.+||.+|+ |.|..+..+++ .|+ +|++++.++ .++.+++. .|.. ..+-..+..++.
T Consensus 147 l~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~---~g~~--~~~d~~~~~~~~~~~~~ 220 (345)
T 2j3h_A 147 FYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKTK---FGFD--DAFNYKEESDLTAALKR 220 (345)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT---SCCS--EEEETTSCSCSHHHHHH
T ss_pred HHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHH---cCCc--eEEecCCHHHHHHHHHH
Confidence 333456778999999997 34677777777 676 999999998 77776532 2431 111111111110
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
...+.+|+|+...- . ..+....++|++||+++.
T Consensus 221 ~~~~~~d~vi~~~g--------~--~~~~~~~~~l~~~G~~v~ 253 (345)
T 2j3h_A 221 CFPNGIDIYFENVG--------G--KMLDAVLVNMNMHGRIAV 253 (345)
T ss_dssp HCTTCEEEEEESSC--------H--HHHHHHHTTEEEEEEEEE
T ss_pred HhCCCCcEEEECCC--------H--HHHHHHHHHHhcCCEEEE
Confidence 11257999986421 1 245666789999999874
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.69 E-value=0.19 Score=47.40 Aligned_cols=97 Identities=21% Similarity=0.217 Sum_probs=59.9
Q ss_pred HHhccCCCCCCEEEEEcC--CCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----
Q 015534 114 IYQNKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----- 184 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----- 184 (405)
+.......++.+||-.|+ |.|..+..+++ .|+ +|++++.++ -++.+++ .+.. .++..+-.++.
T Consensus 162 l~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~---~~~d~~~~~~~~~~~~ 233 (351)
T 1yb5_A 162 LIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQ----NGAH---EVFNHREVNYIDKIKK 233 (351)
T ss_dssp HHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS---EEEETTSTTHHHHHHH
T ss_pred HHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHH----cCCC---EEEeCCCchHHHHHHH
Confidence 333456778999999997 34666666666 676 899999998 7776653 3431 12221111110
Q ss_pred -CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 185 -~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.....+|+|+... + . ..+....++|+++|+++..
T Consensus 234 ~~~~~~~D~vi~~~-G-------~--~~~~~~~~~l~~~G~iv~~ 268 (351)
T 1yb5_A 234 YVGEKGIDIIIEML-A-------N--VNLSKDLSLLSHGGRVIVV 268 (351)
T ss_dssp HHCTTCEEEEEESC-H-------H--HHHHHHHHHEEEEEEEEEC
T ss_pred HcCCCCcEEEEECC-C-------h--HHHHHHHHhccCCCEEEEE
Confidence 1224799998642 1 1 1344556889999998754
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=93.68 E-value=0.043 Score=50.71 Aligned_cols=89 Identities=15% Similarity=0.062 Sum_probs=57.8
Q ss_pred CCCCCEEEEEcC--CCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccc-ccccCCCCceeEEE
Q 015534 120 LFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI-EEIELPVTKVDIII 194 (405)
Q Consensus 120 ~~~~~~VLDiGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~Iv 194 (405)
..+|.+||-+|+ |.|..+..+++ .|+ +|++++.++ .++.+++ .|. + .++..+- .++...-+.+|+|+
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga-~--~~~~~~~~~~~~~~~~~~d~vi 194 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA----LGA-E--EAATYAEVPERAKAWGGLDLVL 194 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH----TTC-S--EEEEGGGHHHHHHHTTSEEEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCC-C--EEEECCcchhHHHHhcCceEEE
Confidence 778999999998 34777777777 676 999999988 7777754 343 2 2222111 11110015799998
Q ss_pred EccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
. . +. . .+....++|+++|+++.
T Consensus 195 d-~-g~-----~----~~~~~~~~l~~~G~~v~ 216 (302)
T 1iz0_A 195 E-V-RG-----K----EVEESLGLLAHGGRLVY 216 (302)
T ss_dssp E-C-SC-----T----THHHHHTTEEEEEEEEE
T ss_pred E-C-CH-----H----HHHHHHHhhccCCEEEE
Confidence 6 3 21 1 24555689999999874
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=93.60 E-value=0.46 Score=44.25 Aligned_cols=101 Identities=19% Similarity=0.179 Sum_probs=66.9
Q ss_pred CCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc-------C-CC---------CcEEEEEccccc
Q 015534 123 DKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------G-FS---------NVITVLKGKIEE 182 (405)
Q Consensus 123 ~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-------~-~~---------~~i~~~~~d~~~ 182 (405)
..+|.-||+|+ | .++..++..|. .|+.+|+++ .++.+.+++... + +. .++++. .|+.+
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~-~~l~~ 83 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGF-RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSC-TNLAE 83 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEE-CCHHH
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccc-cchHh
Confidence 35899999998 3 56777788887 999999999 888877665432 1 11 123322 23222
Q ss_pred ccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCcee
Q 015534 183 IELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASL 232 (405)
Q Consensus 183 ~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (405)
. -...|+|+=.. ......-..++..+.++++|+.+|.-++.++
T Consensus 84 a---~~~ad~ViEav----~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl 126 (319)
T 3ado_A 84 A---VEGVVHIQECV----PENLDLKRKIFAQLDSIVDDRVVLSSSSSCL 126 (319)
T ss_dssp H---TTTEEEEEECC----CSCHHHHHHHHHHHHTTCCSSSEEEECCSSC
T ss_pred H---hccCcEEeecc----ccHHHHHHHHHHHHHHHhhhcceeehhhhhc
Confidence 1 15688887422 3334566789999999999999887655443
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=0.11 Score=49.35 Aligned_cols=92 Identities=23% Similarity=0.203 Sum_probs=60.1
Q ss_pred cCCCCCCEEEEEc--CCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CCCC
Q 015534 118 KFLFKDKVVLDVG--AGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVT 188 (405)
Q Consensus 118 ~~~~~~~~VLDiG--cG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~ 188 (405)
....++.+||-+| .|.|..+..+++ .|+ +|++++.++ -++.+++ .|.. .++..+-.++. ....
T Consensus 159 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~~~~~~~~ 230 (362)
T 2c0c_A 159 GGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKS----LGCD---RPINYKTEPVGTVLKQEYPE 230 (362)
T ss_dssp TCCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHCTT
T ss_pred cCCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH----cCCc---EEEecCChhHHHHHHHhcCC
Confidence 4567899999999 345888888887 677 899999998 7777765 3432 22222111110 1125
Q ss_pred ceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.+|+|+... + . ..+....+.|+++|+++.
T Consensus 231 g~D~vid~~-g----~-----~~~~~~~~~l~~~G~iv~ 259 (362)
T 2c0c_A 231 GVDVVYESV-G----G-----AMFDLAVDALATKGRLIV 259 (362)
T ss_dssp CEEEEEECS-C----T-----HHHHHHHHHEEEEEEEEE
T ss_pred CCCEEEECC-C----H-----HHHHHHHHHHhcCCEEEE
Confidence 799999642 1 1 245556688999999874
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=93.47 E-value=0.22 Score=46.71 Aligned_cols=98 Identities=21% Similarity=0.047 Sum_probs=59.3
Q ss_pred cCCCCCCEEEEEcCCCc-HHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc-cc--CCCCcee
Q 015534 118 KFLFKDKVVLDVGAGTG-ILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-IE--LPVTKVD 191 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G-~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~--~~~~~~D 191 (405)
....+|.+||-+|+|.+ .++..+++ .+..+|+++|.++ -++.+++ .|....+.....|..+ +. .....+|
T Consensus 159 ~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~----~Ga~~~i~~~~~~~~~~v~~~t~g~g~d 234 (348)
T 4eez_A 159 SGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKK----IGADVTINSGDVNPVDEIKKITGGLGVQ 234 (348)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHH----TTCSEEEEC-CCCHHHHHHHHTTSSCEE
T ss_pred cCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhh----cCCeEEEeCCCCCHHHHhhhhcCCCCce
Confidence 45678999999999874 55555555 6677999999999 7776664 3432112222222211 10 1224677
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+++.... . ...+....+.|+++|.++..
T Consensus 235 ~~~~~~~-----~----~~~~~~~~~~l~~~G~~v~~ 262 (348)
T 4eez_A 235 SAIVCAV-----A----RIAFEQAVASLKPMGKMVAV 262 (348)
T ss_dssp EEEECCS-----C----HHHHHHHHHTEEEEEEEEEC
T ss_pred EEEEecc-----C----cchhheeheeecCCceEEEE
Confidence 7775321 1 23445556889999998754
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.37 E-value=0.19 Score=46.90 Aligned_cols=93 Identities=20% Similarity=0.205 Sum_probs=58.2
Q ss_pred ccCCCCCCEEEEEcC--CCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc----c--CC
Q 015534 117 NKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI----E--LP 186 (405)
Q Consensus 117 ~~~~~~~~~VLDiGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~--~~ 186 (405)
.....++.+||-.|+ |.|..+..+++ .|+ +|+++|.++ .++.+++. +. + . ++..+-.+. . ..
T Consensus 135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~----g~-~-~-~~~~~~~~~~~~~~~~~~ 206 (327)
T 1qor_A 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKA----GA-W-Q-VINYREEDLVERLKEITG 206 (327)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----TC-S-E-EEETTTSCHHHHHHHHTT
T ss_pred hhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc----CC-C-E-EEECCCccHHHHHHHHhC
Confidence 456778999999994 34566666666 677 999999998 88777652 32 1 1 222111111 0 11
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
...+|+|+... + . ..+....++|+++|+++.
T Consensus 207 ~~~~D~vi~~~-g-----~----~~~~~~~~~l~~~G~iv~ 237 (327)
T 1qor_A 207 GKKVRVVYDSV-G-----R----DTWERSLDCLQRRGLMVS 237 (327)
T ss_dssp TCCEEEEEECS-C-----G----GGHHHHHHTEEEEEEEEE
T ss_pred CCCceEEEECC-c-----h----HHHHHHHHHhcCCCEEEE
Confidence 24699999643 1 1 234555688999999874
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=93.36 E-value=0.068 Score=50.29 Aligned_cols=92 Identities=18% Similarity=0.104 Sum_probs=59.2
Q ss_pred CCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CCCCce
Q 015534 119 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTKV 190 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~ 190 (405)
...++.+||-+|+|. |.++..+++ .|+ +|+++|.++ -++.+++ .|.. .++...-.++. .. +.+
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~~~d~~~~~~~~~~~~~~-~~~ 231 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE----LGAD---LVVNPLKEDAAKFMKEKV-GGV 231 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTCS---EEECTTTSCHHHHHHHHH-SSE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----CCCC---EEecCCCccHHHHHHHHh-CCC
Confidence 567899999999964 777777777 676 999999998 8877754 3432 12211101110 11 469
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
|+|+... + . ...+....++|+++|+++.-
T Consensus 232 d~vid~~-g----~----~~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 232 HAAVVTA-V----S----KPAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp EEEEESS-C----C----HHHHHHHHHHEEEEEEEEEC
T ss_pred CEEEECC-C----C----HHHHHHHHHHhhcCCEEEEe
Confidence 9998632 1 1 12345566889999998743
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=93.31 E-value=0.2 Score=47.17 Aligned_cols=93 Identities=25% Similarity=0.288 Sum_probs=59.4
Q ss_pred cCCCCCCEEEEEcCCC--cHHHHHHHH-c-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc-----cCCC
Q 015534 118 KFLFKDKVVLDVGAGT--GILSLFCAK-A-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-----ELPV 187 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~--G~l~~~la~-~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~ 187 (405)
....++.+||.+|+|. |..+..+++ . |+ +|+++|.++ .++.+++. +. + ..+-..+ .+. ....
T Consensus 166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~----g~-~-~~~~~~~-~~~~~~~~~~~~ 237 (347)
T 1jvb_A 166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRA----GA-D-YVINASM-QDPLAEIRRITE 237 (347)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHH----TC-S-EEEETTT-SCHHHHHHHHTT
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHh----CC-C-EEecCCC-ccHHHHHHHHhc
Confidence 5567899999999984 556666666 5 77 899999998 88877542 32 1 1121111 111 0111
Q ss_pred -CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 188 -TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 188 -~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+.+|+|+... + . ...+....++|+++|+++.
T Consensus 238 ~~~~d~vi~~~-g----~----~~~~~~~~~~l~~~G~iv~ 269 (347)
T 1jvb_A 238 SKGVDAVIDLN-N----S----EKTLSVYPKALAKQGKYVM 269 (347)
T ss_dssp TSCEEEEEESC-C----C----HHHHTTGGGGEEEEEEEEE
T ss_pred CCCceEEEECC-C----C----HHHHHHHHHHHhcCCEEEE
Confidence 4799999642 1 1 2345556689999999874
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.24 E-value=0.1 Score=49.13 Aligned_cols=94 Identities=18% Similarity=0.203 Sum_probs=59.5
Q ss_pred cCCCCCCEEEEEcC--CCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEE-ccccccc-----CCC
Q 015534 118 KFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK-GKIEEIE-----LPV 187 (405)
Q Consensus 118 ~~~~~~~~VLDiGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~-----~~~ 187 (405)
....++.+||.+|+ |.|..+..+++ .|+ +|+++|.++ .++.+++ .+.. .++. .+..++. ...
T Consensus 165 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~----~g~~---~~~d~~~~~~~~~~~~~~~~ 236 (347)
T 2hcy_A 165 ANLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRS----IGGE---VFIDFTKEKDIVGAVLKATD 236 (347)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHH----TTCC---EEEETTTCSCHHHHHHHHHT
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHH----cCCc---eEEecCccHhHHHHHHHHhC
Confidence 35678999999998 35666666666 676 999999988 7776654 3431 1221 1111111 011
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+.+|+|+...- . ...+....+.|+++|+++.-
T Consensus 237 ~~~D~vi~~~g-----~----~~~~~~~~~~l~~~G~iv~~ 268 (347)
T 2hcy_A 237 GGAHGVINVSV-----S----EAAIEASTRYVRANGTTVLV 268 (347)
T ss_dssp SCEEEEEECSS-----C----HHHHHHHTTSEEEEEEEEEC
T ss_pred CCCCEEEECCC-----c----HHHHHHHHHHHhcCCEEEEE
Confidence 27999997431 1 23456677899999998743
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.16 E-value=0.33 Score=45.07 Aligned_cols=94 Identities=22% Similarity=0.217 Sum_probs=58.7
Q ss_pred hccCCCCCCEEEEEc-CCC-cHHHHHHHH-cCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEccccc-ccCCCCcee
Q 015534 116 QNKFLFKDKVVLDVG-AGT-GILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEE-IELPVTKVD 191 (405)
Q Consensus 116 ~~~~~~~~~~VLDiG-cG~-G~l~~~la~-~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D 191 (405)
......+|.+||-+| +|. |.++..+++ .|+ +|++++.++-.+.+++ .|.. .++..+-.+ +......+|
T Consensus 146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~~~~~~~~~~~----lGa~---~~i~~~~~~~~~~~~~g~D 217 (321)
T 3tqh_A 146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTASKRNHAFLKA----LGAE---QCINYHEEDFLLAISTPVD 217 (321)
T ss_dssp HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEECHHHHHHHHH----HTCS---EEEETTTSCHHHHCCSCEE
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeccchHHHHHH----cCCC---EEEeCCCcchhhhhccCCC
Confidence 346678999999997 554 888888888 677 8999974435555544 4542 233222222 211125799
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|+-.. + . +.+ ....++|+++|+++.
T Consensus 218 ~v~d~~-g-------~-~~~-~~~~~~l~~~G~iv~ 243 (321)
T 3tqh_A 218 AVIDLV-G-------G-DVG-IQSIDCLKETGCIVS 243 (321)
T ss_dssp EEEESS-C-------H-HHH-HHHGGGEEEEEEEEE
T ss_pred EEEECC-C-------c-HHH-HHHHHhccCCCEEEE
Confidence 998532 1 1 122 566789999999874
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=93.07 E-value=0.32 Score=47.68 Aligned_cols=93 Identities=20% Similarity=0.175 Sum_probs=60.2
Q ss_pred cCCCCCCEEEEEcC-C-CcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc-----------
Q 015534 118 KFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE----------- 182 (405)
Q Consensus 118 ~~~~~~~~VLDiGc-G-~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~----------- 182 (405)
....+|.+||-+|+ | .|.++..+++ .|+ +|++++.++ -++.+++. |.. .++...-.+
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga-~vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~d~~~~~~~~~~~ 295 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAGGA-NPICVVSSPQKAEICRAM----GAE---AIIDRNAEGYRFWKDENTQD 295 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TCC---EEEETTTTTCCSEEETTEEC
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHhh----CCc---EEEecCcCcccccccccccc
Confidence 45678999999998 4 3788888888 566 899999888 88887653 432 222211111
Q ss_pred ----------cc--CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 183 ----------IE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 183 ----------~~--~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+. .....+|+|+-.. +. ..+....++|++||.++..
T Consensus 296 ~~~~~~~~~~i~~~t~g~g~Dvvid~~--------G~--~~~~~~~~~l~~~G~iv~~ 343 (456)
T 3krt_A 296 PKEWKRFGKRIRELTGGEDIDIVFEHP--------GR--ETFGASVFVTRKGGTITTC 343 (456)
T ss_dssp HHHHHHHHHHHHHHHTSCCEEEEEECS--------CH--HHHHHHHHHEEEEEEEEES
T ss_pred hHHHHHHHHHHHHHhCCCCCcEEEEcC--------Cc--hhHHHHHHHhhCCcEEEEE
Confidence 10 1225799998532 11 2455566889999998853
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=92.97 E-value=0.061 Score=53.16 Aligned_cols=72 Identities=17% Similarity=0.235 Sum_probs=54.2
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC---------------
Q 015534 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--------------- 186 (405)
Q Consensus 123 ~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--------------- 186 (405)
..+++|+-||.|.+++-+.++|...|.++|+++ .++.-+.++... ....++.+|+.++...
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~ 164 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCD---PATHHFNEDIRDITLSHQEGVSDEAAAEHIR 164 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCC---TTTCEEESCTHHHHCTTCTTSCHHHHHHHHH
T ss_pred cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccC---CCcceeccchhhhhhccccccchhhHHhhhh
Confidence 358999999999999999999988899999999 887766654211 1245677888776421
Q ss_pred --CCceeEEEEcc
Q 015534 187 --VTKVDIIISEW 197 (405)
Q Consensus 187 --~~~~D~Iv~~~ 197 (405)
...+|+|+..+
T Consensus 165 ~~~~~~Dvl~gGp 177 (482)
T 3me5_A 165 QHIPEHDVLLAGF 177 (482)
T ss_dssp HHSCCCSEEEEEC
T ss_pred hcCCCCCEEEecC
Confidence 14689999754
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.72 E-value=0.16 Score=48.36 Aligned_cols=92 Identities=23% Similarity=0.208 Sum_probs=55.4
Q ss_pred CCCCCEEEEEc-CC-CcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCceeE
Q 015534 120 LFKDKVVLDVG-AG-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDI 192 (405)
Q Consensus 120 ~~~~~~VLDiG-cG-~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~ 192 (405)
..+|.+||-+| +| .|.++..+++ .|+ +|++++ ++ -.+.+++ .|.. .++..+-.++. .....+|+
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga-~Vi~~~-~~~~~~~~~~----lGa~---~v~~~~~~~~~~~~~~~~g~D~ 251 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWDA-HVTAVC-SQDASELVRK----LGAD---DVIDYKSGSVEEQLKSLKPFDF 251 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHH----TTCS---EEEETTSSCHHHHHHTSCCBSE
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEe-ChHHHHHHHH----cCCC---EEEECCchHHHHHHhhcCCCCE
Confidence 67899999999 34 3777888887 676 899998 66 6666543 3432 22222111110 11246999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
|+-.. + . . ...+....++|+++|+++..
T Consensus 252 vid~~-g----~-~--~~~~~~~~~~l~~~G~iv~~ 279 (375)
T 2vn8_A 252 ILDNV-G----G-S--TETWAPDFLKKWSGATYVTL 279 (375)
T ss_dssp EEESS-C----T-T--HHHHGGGGBCSSSCCEEEES
T ss_pred EEECC-C----C-h--hhhhHHHHHhhcCCcEEEEe
Confidence 98632 1 1 1 12234455889999998743
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=92.64 E-value=0.34 Score=45.24 Aligned_cols=94 Identities=19% Similarity=0.213 Sum_probs=59.4
Q ss_pred ccCCCCCCEEEEEcC--CCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc----c--CC
Q 015534 117 NKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI----E--LP 186 (405)
Q Consensus 117 ~~~~~~~~~VLDiGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~--~~ 186 (405)
.....++.+||-.|+ |.|..+..+++ .|+ +|+++|.++ .++.+++. +. + . ++..+-.+. . ..
T Consensus 140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~----g~-~-~-~~d~~~~~~~~~i~~~~~ 211 (333)
T 1wly_A 140 THKVKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKL----GC-H-H-TINYSTQDFAEVVREITG 211 (333)
T ss_dssp TSCCCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TC-S-E-EEETTTSCHHHHHHHHHT
T ss_pred hhCCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CC-C-E-EEECCCHHHHHHHHHHhC
Confidence 356778999999995 55777666666 676 999999999 88777652 32 1 1 222111111 0 11
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
...+|+|+... +. ..+....++|+++|+++..
T Consensus 212 ~~~~d~vi~~~-g~---------~~~~~~~~~l~~~G~iv~~ 243 (333)
T 1wly_A 212 GKGVDVVYDSI-GK---------DTLQKSLDCLRPRGMCAAY 243 (333)
T ss_dssp TCCEEEEEECS-CT---------TTHHHHHHTEEEEEEEEEC
T ss_pred CCCCeEEEECC-cH---------HHHHHHHHhhccCCEEEEE
Confidence 24699999643 11 2245556889999998743
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.47 E-value=0.29 Score=46.16 Aligned_cols=97 Identities=24% Similarity=0.251 Sum_probs=60.8
Q ss_pred HHhccCCCCCCEEEEEcC-C-CcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----
Q 015534 114 IYQNKFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----- 184 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGc-G-~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----- 184 (405)
+.......++.+||-+|+ | .|..+..+++ .|+ +|++++.++ -++.+++. |.. .++..+-.++.
T Consensus 159 l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~---~~~~~~~~~~~~~~~~ 230 (353)
T 4dup_A 159 LFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACERL----GAK---RGINYRSEDFAAVIKA 230 (353)
T ss_dssp HTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHH
T ss_pred HHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCC---EEEeCCchHHHHHHHH
Confidence 334456788999999953 3 4777777777 677 899999999 88877653 321 22222111110
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.....+|+|+... + .. .+....+.|+++|.++..
T Consensus 231 ~~~~g~Dvvid~~-g-----~~----~~~~~~~~l~~~G~iv~~ 264 (353)
T 4dup_A 231 ETGQGVDIILDMI-G-----AA----YFERNIASLAKDGCLSII 264 (353)
T ss_dssp HHSSCEEEEEESC-C-----GG----GHHHHHHTEEEEEEEEEC
T ss_pred HhCCCceEEEECC-C-----HH----HHHHHHHHhccCCEEEEE
Confidence 0135799999643 1 11 244456889999998743
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.43 E-value=0.71 Score=44.02 Aligned_cols=94 Identities=17% Similarity=0.171 Sum_probs=66.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCC-cEEEEEcccccccCCCCceeEEEEcccc
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
.+.+||.|+.+.|.++..++.. .++.+.-|- .....+.++..|++++ .+++... ... + ...||+|+..+.
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~---~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~--~-~~~~~~v~~~lp- 109 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH---KPYSIGDSYISELATRENLRLNGIDESSVKFLDS-TAD--Y-PQQPGVVLIKVP- 109 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG---CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET-TSC--C-CSSCSEEEEECC-
T ss_pred CCCCEEEECCCCCHHHHhhccC---CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc-ccc--c-ccCCCEEEEEcC-
Confidence 4567999999999999888754 445554455 5567788999999864 3665432 121 2 378999986432
Q ss_pred ccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
.....+...+..+...|+||+.++
T Consensus 110 ---k~~~~l~~~L~~l~~~l~~~~~i~ 133 (375)
T 4dcm_A 110 ---KTLALLEQQLRALRKVVTSDTRII 133 (375)
T ss_dssp ---SCHHHHHHHHHHHHTTCCTTSEEE
T ss_pred ---CCHHHHHHHHHHHHhhCCCCCEEE
Confidence 233456677788889999999886
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=92.21 E-value=0.096 Score=48.36 Aligned_cols=59 Identities=22% Similarity=0.287 Sum_probs=41.1
Q ss_pred CcEEEEEccccccc--CCCCceeEEEEccccccccC---------------h---hhHHHHHHHHHhcccCCcEEEecCc
Q 015534 171 NVITVLKGKIEEIE--LPVTKVDIIISEWMGYFLLF---------------E---NMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 171 ~~i~~~~~d~~~~~--~~~~~~D~Iv~~~~~~~l~~---------------~---~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
.+++++++|..+.. +++++||+|++++. |.... + ..+..++.++.++|||||.++....
T Consensus 20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPP-Y~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~ 98 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFPEASVHLVVTSPP-YWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG 98 (297)
T ss_dssp -CEEEEESCHHHHHTTSCTTCEEEEEECCC-CCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCCEEEECcHHHHHhhCCCCceeEEEECCC-CCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence 35789999998842 45689999999974 32210 1 1134567788999999999876543
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=92.16 E-value=0.14 Score=48.45 Aligned_cols=96 Identities=13% Similarity=0.150 Sum_probs=59.2
Q ss_pred hccCCCCC--CEEEEEcCC--CcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----
Q 015534 116 QNKFLFKD--KVVLDVGAG--TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----- 184 (405)
Q Consensus 116 ~~~~~~~~--~~VLDiGcG--~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----- 184 (405)
......++ .+||-.|++ .|..+..+++ .|+.+|++++.++ -++.+++. .|.. . ++..+-.++.
T Consensus 152 ~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~---~g~~--~-~~d~~~~~~~~~~~~ 225 (357)
T 2zb4_A 152 EKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSE---LGFD--A-AINYKKDNVAEQLRE 225 (357)
T ss_dssp HHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---SCCS--E-EEETTTSCHHHHHHH
T ss_pred HhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH---cCCc--e-EEecCchHHHHHHHH
Confidence 33566788 999999983 3566666666 6766999999998 77666542 2331 1 2221111110
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
...+.+|+++... + . ..+....++|+++|+++.
T Consensus 226 ~~~~~~d~vi~~~-G-------~--~~~~~~~~~l~~~G~iv~ 258 (357)
T 2zb4_A 226 SCPAGVDVYFDNV-G-------G--NISDTVISQMNENSHIIL 258 (357)
T ss_dssp HCTTCEEEEEESC-C-------H--HHHHHHHHTEEEEEEEEE
T ss_pred hcCCCCCEEEECC-C-------H--HHHHHHHHHhccCcEEEE
Confidence 1113799999643 1 1 345566689999999874
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.12 E-value=1.3 Score=39.90 Aligned_cols=104 Identities=19% Similarity=0.201 Sum_probs=65.8
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEech------------H-HHHHHHHHHHHcCCCCcEEEEEccccccc
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECS------------Q-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s------------~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (405)
..+++||-.|++.| .++..+++.|+ +|+.+|.+ . .++.+...+...+ .++.++..|+.+..
T Consensus 8 l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~ 84 (287)
T 3pxx_A 8 VQDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRA 84 (287)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHH
Confidence 46789999999887 45666677777 89999976 5 5555555555544 46899999987643
Q ss_pred C-----C-----CCceeEEEEccccccc---cChhhHH-----------HHHHHHHhcccCCcEEEe
Q 015534 185 L-----P-----VTKVDIIISEWMGYFL---LFENMLN-----------TVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 185 ~-----~-----~~~~D~Iv~~~~~~~l---~~~~~~~-----------~~l~~~~~~LkpgG~lip 227 (405)
. . -++.|++|.+.-.... .....+. .+.+.+...++.+|.+|.
T Consensus 85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~ 151 (287)
T 3pxx_A 85 AVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIIT 151 (287)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEE
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEE
Confidence 1 0 1478999986311100 1122222 334555667777887763
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=92.02 E-value=0.56 Score=39.44 Aligned_cols=90 Identities=17% Similarity=0.162 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----C-CCCceeE
Q 015534 122 KDKVVLDVGAGT-G-ILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----L-PVTKVDI 192 (405)
Q Consensus 122 ~~~~VLDiGcG~-G-~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~-~~~~~D~ 192 (405)
.+.+|+-+|+|. | .++..|.+. |. .|+++|.++ .++.+++ .+ +.++.+|..+.. . ....+|+
T Consensus 38 ~~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~----~g----~~~~~gd~~~~~~l~~~~~~~~ad~ 108 (183)
T 3c85_A 38 GHAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRS----EG----RNVISGDATDPDFWERILDTGHVKL 108 (183)
T ss_dssp TTCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHH----TT----CCEEECCTTCHHHHHTBCSCCCCCE
T ss_pred CCCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHH----CC----CCEEEcCCCCHHHHHhccCCCCCCE
Confidence 356799999875 3 233444445 76 899999999 7665543 33 456677764421 1 2357999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
|+...- .......++. ..+.+.|++.++
T Consensus 109 vi~~~~-----~~~~~~~~~~-~~~~~~~~~~ii 136 (183)
T 3c85_A 109 VLLAMP-----HHQGNQTALE-QLQRRNYKGQIA 136 (183)
T ss_dssp EEECCS-----SHHHHHHHHH-HHHHTTCCSEEE
T ss_pred EEEeCC-----ChHHHHHHHH-HHHHHCCCCEEE
Confidence 987321 1122222222 335556676666
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=91.96 E-value=0.73 Score=36.81 Aligned_cols=65 Identities=18% Similarity=0.233 Sum_probs=43.6
Q ss_pred CCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEE
Q 015534 123 DKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIIS 195 (405)
Q Consensus 123 ~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv~ 195 (405)
..+|+-+|+|. | .++..+.+.|. +|+++|.++ .++.+++ .+ +.++.+|..+.. .....+|+|+.
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~----~~----~~~~~gd~~~~~~l~~~~~~~~d~vi~ 76 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLED----EG----FDAVIADPTDESFYRSLDLEGVSAVLI 76 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH----TT----CEEEECCTTCHHHHHHSCCTTCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHH----CC----CcEEECCCCCHHHHHhCCcccCCEEEE
Confidence 35799999965 2 23444445666 899999999 7766553 22 577888886642 22357899987
Q ss_pred c
Q 015534 196 E 196 (405)
Q Consensus 196 ~ 196 (405)
.
T Consensus 77 ~ 77 (141)
T 3llv_A 77 T 77 (141)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=91.90 E-value=0.51 Score=44.48 Aligned_cols=94 Identities=21% Similarity=0.141 Sum_probs=58.0
Q ss_pred hccCCCCCCEEEEEcC--CCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc----c--C
Q 015534 116 QNKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI----E--L 185 (405)
Q Consensus 116 ~~~~~~~~~~VLDiGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~--~ 185 (405)
......++.+||-.|+ |.|..+..+++ .|+ +|+++|.++ .++.+++. |. + . ++..+-.++ . .
T Consensus 156 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----g~-~-~-~~~~~~~~~~~~~~~~~ 227 (354)
T 2j8z_A 156 LVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKL----GA-A-A-GFNYKKEDFSEATLKFT 227 (354)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH----TC-S-E-EEETTTSCHHHHHHHHT
T ss_pred HhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc----CC-c-E-EEecCChHHHHHHHHHh
Confidence 3356778999999995 34666666666 666 899999998 88777542 32 1 1 222111111 0 1
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
....+|+|+... +. . .+....++|+++|+++.
T Consensus 228 ~~~~~d~vi~~~-G~-----~----~~~~~~~~l~~~G~iv~ 259 (354)
T 2j8z_A 228 KGAGVNLILDCI-GG-----S----YWEKNVNCLALDGRWVL 259 (354)
T ss_dssp TTSCEEEEEESS-CG-----G----GHHHHHHHEEEEEEEEE
T ss_pred cCCCceEEEECC-Cc-----h----HHHHHHHhccCCCEEEE
Confidence 224799999643 11 1 23444578999999874
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=91.89 E-value=0.17 Score=47.07 Aligned_cols=88 Identities=20% Similarity=0.108 Sum_probs=56.9
Q ss_pred CCEEEEEcC--CCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc-cCCCCceeEEEEcc
Q 015534 123 DKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDIIISEW 197 (405)
Q Consensus 123 ~~~VLDiGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~Iv~~~ 197 (405)
+. ||-+|+ |.|.++..+++ .|+ +|++++.++ -.+.+++. |.. ..+-..+.... .+..+.+|+|+-..
T Consensus 148 g~-VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~--~vi~~~~~~~~~~~~~~~~d~v~d~~ 219 (324)
T 3nx4_A 148 GE-VVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSL----GAN--RILSRDEFAESRPLEKQLWAGAIDTV 219 (324)
T ss_dssp CC-EEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHH----TCS--EEEEGGGSSCCCSSCCCCEEEEEESS
T ss_pred Ce-EEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCC--EEEecCCHHHHHhhcCCCccEEEECC
Confidence 45 999997 34788888888 677 999999999 88888763 432 11211121111 12235799988521
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
. . ..+....++|+|+|+++..
T Consensus 220 ------g--~--~~~~~~~~~l~~~G~iv~~ 240 (324)
T 3nx4_A 220 ------G--D--KVLAKVLAQMNYGGCVAAC 240 (324)
T ss_dssp ------C--H--HHHHHHHHTEEEEEEEEEC
T ss_pred ------C--c--HHHHHHHHHHhcCCEEEEE
Confidence 1 1 1566667899999998753
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=91.74 E-value=2.2 Score=39.89 Aligned_cols=120 Identities=9% Similarity=0.119 Sum_probs=76.1
Q ss_pred HhHHHHHHHHHhccCCC-CCCEEEEEcCCCcHHHHHHHHcC--CCeEEEEechHHHHHHHHHHHHcC-------------
Q 015534 105 VRTKSYQNVIYQNKFLF-KDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQMANMAKQIVEANG------------- 168 (405)
Q Consensus 105 ~r~~~~~~~i~~~~~~~-~~~~VLDiGcG~G~l~~~la~~g--~~~V~~vD~s~~~~~a~~~~~~~~------------- 168 (405)
.|+..+.+.+.+..... +...|+-||||.=.....+...+ ..+++=||..++++.=++.+...+
T Consensus 72 ~Rt~~iD~~v~~fl~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~ 151 (334)
T 3iei_A 72 ARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSED 151 (334)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhccccccc
Confidence 34444444443333222 45789999999988877777642 347888888774444344444311
Q ss_pred ---------CCCcEEEEEccccccc----------CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 169 ---------FSNVITVLKGKIEEIE----------LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 169 ---------~~~~i~~~~~d~~~~~----------~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
.+++..++..|+.+.. +.....-+++++.+..++ .+.....++..+..... +|.++
T Consensus 152 ~~~~~~~~l~s~~y~~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL-~~~~~~~ll~~ia~~f~-~~~~i 226 (334)
T 3iei_A 152 TLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYM-TPEQSANLLKWAANSFE-RAMFI 226 (334)
T ss_dssp SCBCCTTEEECSSEEEEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGS-CHHHHHHHHHHHHHHCS-SEEEE
T ss_pred ccccccccCCCCceEEEccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCC-CHHHHHHHHHHHHHhCC-CceEE
Confidence 1367889999987631 233566789999877666 45577788888877664 45444
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=91.50 E-value=0.85 Score=42.30 Aligned_cols=87 Identities=17% Similarity=0.182 Sum_probs=57.6
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCC-eEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc-ccCCCCceeEEEEccc
Q 015534 124 KVVLDVGAGT--GILSLFCAKAGAA-HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-IELPVTKVDIIISEWM 198 (405)
Q Consensus 124 ~~VLDiGcG~--G~l~~~la~~g~~-~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~Iv~~~~ 198 (405)
.+|.-||+|. |.++..+++.|.. +|+++|.++ .++.+.+ .|..+ -...+..+ .. ...|+|+....
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~----~G~~~---~~~~~~~~~~~---~~aDvVilavp 103 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGIID---EGTTSIAKVED---FSPDFVMLSSP 103 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSCS---EEESCTTGGGG---GCCSEEEECSC
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH----CCCcc---hhcCCHHHHhh---ccCCEEEEeCC
Confidence 6899999886 3556666677753 899999999 7776553 34321 12234433 21 56899997432
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
......++..+...|+||.+++
T Consensus 104 ------~~~~~~vl~~l~~~l~~~~iv~ 125 (314)
T 3ggo_A 104 ------VRTFREIAKKLSYILSEDATVT 125 (314)
T ss_dssp ------GGGHHHHHHHHHHHSCTTCEEE
T ss_pred ------HHHHHHHHHHHhhccCCCcEEE
Confidence 2345677788888899988765
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=91.41 E-value=0.64 Score=43.59 Aligned_cols=92 Identities=22% Similarity=0.220 Sum_probs=59.3
Q ss_pred hccCCCCCCEEEEEcC-C-CcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc------C
Q 015534 116 QNKFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------L 185 (405)
Q Consensus 116 ~~~~~~~~~~VLDiGc-G-~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~ 185 (405)
......+|.+||-+|+ | .|.++..+++ .|+ +|+++ .++ -++.+++. |.. . +. +-.++. .
T Consensus 144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~l----Ga~--~--i~-~~~~~~~~~~~~~ 212 (343)
T 3gaz_A 144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRDL----GAT--P--ID-ASREPEDYAAEHT 212 (343)
T ss_dssp TTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHHH----TSE--E--EE-TTSCHHHHHHHHH
T ss_pred HhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHHc----CCC--E--ec-cCCCHHHHHHHHh
Confidence 4456788999999994 3 3788888887 677 89999 777 77776553 431 1 22 222111 1
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
....+|+|+-.. + . ..+....++|+++|.++..
T Consensus 213 ~~~g~D~vid~~-g----~-----~~~~~~~~~l~~~G~iv~~ 245 (343)
T 3gaz_A 213 AGQGFDLVYDTL-G----G-----PVLDASFSAVKRFGHVVSC 245 (343)
T ss_dssp TTSCEEEEEESS-C----T-----HHHHHHHHHEEEEEEEEES
T ss_pred cCCCceEEEECC-C----c-----HHHHHHHHHHhcCCeEEEE
Confidence 225799998632 1 1 2345556789999998753
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=91.17 E-value=0.57 Score=44.20 Aligned_cols=101 Identities=11% Similarity=0.120 Sum_probs=55.7
Q ss_pred HHhccCCCCCCEEEEEcC--CCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEc------ccccc
Q 015534 114 IYQNKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG------KIEEI 183 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~------d~~~~ 183 (405)
+.......+|.+||-+|+ |.|.++..+|+ .|+..|..++.++ ..+. .+.++..|.. .++.. ++.++
T Consensus 159 l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~-~~~~~~lGa~---~vi~~~~~~~~~~~~~ 234 (357)
T 1zsy_A 159 LMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKL-SDRLKSLGAE---HVITEEELRRPEMKNF 234 (357)
T ss_dssp HHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHH-HHHHHHTTCS---EEEEHHHHHSGGGGGT
T ss_pred HHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHH-HHHHHhcCCc---EEEecCcchHHHHHHH
Confidence 334456788999999997 34788888888 6775555555543 2111 1223344542 22322 11111
Q ss_pred cCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
....+.+|+|+-.. +.. .+ ....++|+++|+++..
T Consensus 235 ~~~~~~~Dvvid~~------g~~---~~-~~~~~~l~~~G~iv~~ 269 (357)
T 1zsy_A 235 FKDMPQPRLALNCV------GGK---SS-TELLRQLARGGTMVTY 269 (357)
T ss_dssp TSSSCCCSEEEESS------CHH---HH-HHHHTTSCTTCEEEEC
T ss_pred HhCCCCceEEEECC------CcH---HH-HHHHHhhCCCCEEEEE
Confidence 11112599998522 111 12 2345899999998753
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=91.02 E-value=0.39 Score=45.39 Aligned_cols=101 Identities=12% Similarity=0.115 Sum_probs=56.5
Q ss_pred HHhccCCCCC-CEEEEEcC-C-CcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccc---ccc--
Q 015534 114 IYQNKFLFKD-KVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI---EEI-- 183 (405)
Q Consensus 114 i~~~~~~~~~-~~VLDiGc-G-~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~---~~~-- 183 (405)
+.......+| .+||-+|+ | .|.++..+|+ .|+ +|+++..++ -++..++.++..|.. .++..+- .++
T Consensus 158 l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~~~lGa~---~vi~~~~~~~~~~~~ 233 (364)
T 1gu7_A 158 LTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGAT---QVITEDQNNSREFGP 233 (364)
T ss_dssp HHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCS---EEEEHHHHHCGGGHH
T ss_pred HHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCCC-EEEEEecCccccHHHHHHHHhcCCe---EEEecCccchHHHHH
Confidence 3333456788 99999997 3 3788888888 677 777776544 322212223344542 2232211 111
Q ss_pred --c--C--CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 184 --E--L--PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 184 --~--~--~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
. . ....+|+|+-.. + . .... ...++|+++|+++..
T Consensus 234 ~i~~~t~~~~~g~Dvvid~~-G-------~-~~~~-~~~~~l~~~G~~v~~ 274 (364)
T 1gu7_A 234 TIKEWIKQSGGEAKLALNCV-G-------G-KSST-GIARKLNNNGLMLTY 274 (364)
T ss_dssp HHHHHHHHHTCCEEEEEESS-C-------H-HHHH-HHHHTSCTTCEEEEC
T ss_pred HHHHHhhccCCCceEEEECC-C-------c-hhHH-HHHHHhccCCEEEEe
Confidence 0 0 124799998532 1 1 1223 445899999998753
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=90.79 E-value=0.58 Score=45.25 Aligned_cols=89 Identities=16% Similarity=0.206 Sum_probs=56.9
Q ss_pred CCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEE
Q 015534 123 DKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIIS 195 (405)
Q Consensus 123 ~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv~ 195 (405)
+.+|+-+|+|. | .++..|.+.|. .|+++|.++ .++.+++ .| +.++.+|..+.. ..-..+|+||+
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~~v~~~~~----~g----~~vi~GDat~~~~L~~agi~~A~~viv 74 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPDHIETLRK----FG----MKVFYGDATRMDLLESAGAAKAEVLIN 74 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHHHHHHHHH----TT----CCCEESCTTCHHHHHHTTTTTCSEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHh----CC----CeEEEcCCCCHHHHHhcCCCccCEEEE
Confidence 34688988876 3 23334444565 899999999 8887763 23 568889987753 23467999987
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
.. ........+-...+.+.|+..+|
T Consensus 75 ~~------~~~~~n~~i~~~ar~~~p~~~Ii 99 (413)
T 3l9w_A 75 AI------DDPQTNLQLTEMVKEHFPHLQII 99 (413)
T ss_dssp CC------SSHHHHHHHHHHHHHHCTTCEEE
T ss_pred CC------CChHHHHHHHHHHHHhCCCCeEE
Confidence 32 11222333444456677887666
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=90.77 E-value=1.9 Score=38.41 Aligned_cols=75 Identities=11% Similarity=0.086 Sum_probs=53.7
Q ss_pred CCCCEEEEEcCC--Cc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-----C---
Q 015534 121 FKDKVVLDVGAG--TG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P--- 186 (405)
Q Consensus 121 ~~~~~VLDiGcG--~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~--- 186 (405)
..+++||-.|++ .| .++..+++.|+ +|+.++.++ ..+.+.+.....+- .++.++.+|+.+... .
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~ 82 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDR-NDSIILPCDVTNDAEIETCFASIK 82 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHHH
Confidence 467899999987 44 35667777887 899999888 77777766655442 258899999976531 0
Q ss_pred --CCceeEEEEcc
Q 015534 187 --VTKVDIIISEW 197 (405)
Q Consensus 187 --~~~~D~Iv~~~ 197 (405)
.+.+|++|.+.
T Consensus 83 ~~~g~id~li~~A 95 (266)
T 3oig_A 83 EQVGVIHGIAHCI 95 (266)
T ss_dssp HHHSCCCEEEECC
T ss_pred HHhCCeeEEEEcc
Confidence 14789999853
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=90.67 E-value=1.4 Score=40.21 Aligned_cols=104 Identities=25% Similarity=0.342 Sum_probs=65.1
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH--HHHHHHHHHHHcCCCCcEEEEEcccccccC----------
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ--MANMAKQIVEANGFSNVITVLKGKIEEIEL---------- 185 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~--~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------- 185 (405)
..+++||-.|++.| .++..+++.|+ +|+.++.++ ..+.+.+.....+ .++.++.+|+.+...
T Consensus 45 l~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~ 121 (291)
T 3ijr_A 45 LKGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVR 121 (291)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence 46789999998887 35666667777 899998875 4455555555444 468999999976430
Q ss_pred CCCceeEEEEcccccc----c--cChhhHH-----------HHHHHHHhcccCCcEEEe
Q 015534 186 PVTKVDIIISEWMGYF----L--LFENMLN-----------TVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~----l--~~~~~~~-----------~~l~~~~~~LkpgG~lip 227 (405)
.-+..|++|.+.-... + .....+. .+.+.+.+.++.+|.||.
T Consensus 122 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~ 180 (291)
T 3ijr_A 122 QLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIIN 180 (291)
T ss_dssp HHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEE
T ss_pred HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEE
Confidence 0147899998631110 0 0112221 344556677778887763
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=90.51 E-value=0.088 Score=49.93 Aligned_cols=93 Identities=22% Similarity=0.156 Sum_probs=57.3
Q ss_pred cCCC-CCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEE-ccccccc-CCCCcee
Q 015534 118 KFLF-KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK-GKIEEIE-LPVTKVD 191 (405)
Q Consensus 118 ~~~~-~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~-~~~~~~D 191 (405)
.... +|.+||-+|+|. |.++..+++ .|+ +|++++.++ -++.+++ ..|... ++. .+...+. .. +.+|
T Consensus 175 ~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~---~lGa~~---vi~~~~~~~~~~~~-~g~D 246 (357)
T 2cf5_A 175 FGLKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQ---DLGADD---YVIGSDQAKMSELA-DSLD 246 (357)
T ss_dssp TSTTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHT---TSCCSC---EEETTCHHHHHHST-TTEE
T ss_pred cCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH---HcCCce---eeccccHHHHHHhc-CCCC
Confidence 3455 899999999875 677777777 677 899999998 7766652 234321 222 1211111 22 4799
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|+-.. + .... +....++|+++|+++.
T Consensus 247 ~vid~~-g----~~~~----~~~~~~~l~~~G~iv~ 273 (357)
T 2cf5_A 247 YVIDTV-P----VHHA----LEPYLSLLKLDGKLIL 273 (357)
T ss_dssp EEEECC-C----SCCC----SHHHHTTEEEEEEEEE
T ss_pred EEEECC-C----ChHH----HHHHHHHhccCCEEEE
Confidence 998532 1 1111 2334478999999874
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=90.36 E-value=0.17 Score=48.17 Aligned_cols=97 Identities=18% Similarity=0.154 Sum_probs=53.8
Q ss_pred CCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 122 KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 122 ~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
++.+||-+|+|. |..+..+++ .|+ +|+++|.++ -++.+++.... .+..+..+..++.-.-..+|+|+....
T Consensus 166 ~~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~DvVI~~~~ 239 (361)
T 1pjc_A 166 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAVAEADLLIGAVL 239 (361)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHHHTCSEEEECCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCc-----eeEeeeCCHHHHHHHHcCCCEEEECCC
Confidence 458999999965 444444444 677 999999999 77777665432 122332222222100136899996431
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.... ..+.-+.....+.++|||.++-
T Consensus 240 ~~~~---~~~~li~~~~~~~~~~g~~ivd 265 (361)
T 1pjc_A 240 VPGR---RAPILVPASLVEQMRTGSVIVD 265 (361)
T ss_dssp CTTS---SCCCCBCHHHHTTSCTTCEEEE
T ss_pred cCCC---CCCeecCHHHHhhCCCCCEEEE
Confidence 1000 0000012233467899998874
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=90.35 E-value=1.3 Score=40.60 Aligned_cols=95 Identities=19% Similarity=0.288 Sum_probs=59.4
Q ss_pred CEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHH-------HcCC-C-------------CcEEEEEcc
Q 015534 124 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVE-------ANGF-S-------------NVITVLKGK 179 (405)
Q Consensus 124 ~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~-------~~~~-~-------------~~i~~~~~d 179 (405)
.+|.-||+|. | .++..+++.|. +|+.+|.++ .++.+++.+. ..|. . .++++. .|
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~-~~ 93 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-TD 93 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-SC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEe-cC
Confidence 5799999997 3 46777777876 999999999 8877655332 1221 0 124432 33
Q ss_pred cccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 180 ~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
..+. + ...|+|+.... ........++..+...++|+.+++-
T Consensus 94 ~~~~-~--~~aD~Vi~avp----~~~~~~~~v~~~l~~~~~~~~iv~s 134 (302)
T 1f0y_A 94 AASV-V--HSTDLVVEAIV----ENLKVKNELFKRLDKFAAEHTIFAS 134 (302)
T ss_dssp HHHH-T--TSCSEEEECCC----SCHHHHHHHHHHHTTTSCTTCEEEE
T ss_pred HHHh-h--cCCCEEEEcCc----CcHHHHHHHHHHHHhhCCCCeEEEE
Confidence 3321 1 56899996432 1112345677778888888876653
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=90.31 E-value=1.1 Score=36.50 Aligned_cols=92 Identities=12% Similarity=0.082 Sum_probs=52.0
Q ss_pred CCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEech-H-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEE
Q 015534 123 DKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS-Q-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIII 194 (405)
Q Consensus 123 ~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s-~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv 194 (405)
..+|+-+|+|. | .++..|.+.|. .|+.+|.+ + .++...+... ..+.++.+|..+.. ..-..+|+|+
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~~~-----~~~~~i~gd~~~~~~l~~a~i~~ad~vi 76 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLG-----DNADVIPGDSNDSSVLKKAGIDRCRAIL 76 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHC-----TTCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECCChHHHHHHHHhhc-----CCCeEEEcCCCCHHHHHHcChhhCCEEE
Confidence 34688888754 2 22333444565 89999997 4 4444433221 23788999886532 1236789998
Q ss_pred EccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
+.. ........+....+.+.|...++
T Consensus 77 ~~~------~~d~~n~~~~~~a~~~~~~~~ii 102 (153)
T 1id1_A 77 ALS------DNDADNAFVVLSAKDMSSDVKTV 102 (153)
T ss_dssp ECS------SCHHHHHHHHHHHHHHTSSSCEE
T ss_pred Eec------CChHHHHHHHHHHHHHCCCCEEE
Confidence 732 11233334444455666666665
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=90.23 E-value=0.34 Score=45.97 Aligned_cols=92 Identities=23% Similarity=0.172 Sum_probs=55.9
Q ss_pred CCC-CCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEE-ccccccc-CCCCceeE
Q 015534 119 FLF-KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK-GKIEEIE-LPVTKVDI 192 (405)
Q Consensus 119 ~~~-~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~-~~~~~~D~ 192 (405)
... +|.+||-+|+|. |.++..+++ .|+ +|++++.++ -++.+++ ..|. + .++. .+...+. .. +.+|+
T Consensus 183 ~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~---~lGa-~--~v~~~~~~~~~~~~~-~~~D~ 254 (366)
T 1yqd_A 183 GLDEPGKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEEALK---NFGA-D--SFLVSRDQEQMQAAA-GTLDG 254 (366)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHHH---TSCC-S--EEEETTCHHHHHHTT-TCEEE
T ss_pred CcCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH---hcCC-c--eEEeccCHHHHHHhh-CCCCE
Confidence 455 889999999865 667777777 676 899999988 7766553 2342 1 2222 1111111 12 47999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+... +. ... +....++|+++|+++.
T Consensus 255 vid~~-g~----~~~----~~~~~~~l~~~G~iv~ 280 (366)
T 1yqd_A 255 IIDTV-SA----VHP----LLPLFGLLKSHGKLIL 280 (366)
T ss_dssp EEECC-SS----CCC----SHHHHHHEEEEEEEEE
T ss_pred EEECC-Cc----HHH----HHHHHHHHhcCCEEEE
Confidence 99632 11 111 2234477899999874
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=90.02 E-value=1.1 Score=40.16 Aligned_cols=74 Identities=26% Similarity=0.330 Sum_probs=57.4
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015534 121 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~---l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (405)
.+|+++|--|++.|+ .+..+++.|+ +|+.+|.++ .++.+.+.+...+ .++.++.+|+.+... .
T Consensus 5 L~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~ 81 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFET 81 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 478999999999983 5667777887 899999999 8877777777766 458899999976430 1
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
-++.|++|.+.
T Consensus 82 ~G~iDiLVNNA 92 (254)
T 4fn4_A 82 YSRIDVLCNNA 92 (254)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEECC
Confidence 26799999864
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=90.00 E-value=0.54 Score=42.29 Aligned_cols=74 Identities=19% Similarity=0.157 Sum_probs=56.9
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----------CC
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LP 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 186 (405)
..|+++|--|++.| ..+..+++.|+ +|+.+|.++ .++.+.+.+...+ .++.++.+|+.+.. -.
T Consensus 7 L~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (255)
T 4g81_D 7 LTGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKG--YDAHGVAFDVTDELAIEAAFSKLDAE 83 (255)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 57899999999888 45677777888 999999998 7777666677666 45888999987642 11
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
-++.|++|.+.
T Consensus 84 ~G~iDiLVNNA 94 (255)
T 4g81_D 84 GIHVDILINNA 94 (255)
T ss_dssp TCCCCEEEECC
T ss_pred CCCCcEEEECC
Confidence 36899999863
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=89.97 E-value=1.7 Score=42.64 Aligned_cols=96 Identities=20% Similarity=0.250 Sum_probs=61.1
Q ss_pred CEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc-------C------C-CCcEEEEEcccccccCC
Q 015534 124 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------G------F-SNVITVLKGKIEEIELP 186 (405)
Q Consensus 124 ~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-------~------~-~~~i~~~~~d~~~~~~~ 186 (405)
.+|.-||+|. | .++..+++.|. .|+.+|.++ .++.+++.+..+ + . .....+ ..|...+
T Consensus 38 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~~~--- 112 (463)
T 1zcj_A 38 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKEL--- 112 (463)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGGGG---
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHHHH---
Confidence 5799999998 3 55666777776 999999999 888776643211 1 0 011232 4444322
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
..+|+||.... ........++..+...++|+.+++-++
T Consensus 113 -~~aDlVIeaVp----e~~~~k~~v~~~l~~~~~~~~ii~snT 150 (463)
T 1zcj_A 113 -STVDLVVEAVF----EDMNLKKKVFAELSALCKPGAFLCTNT 150 (463)
T ss_dssp -TTCSEEEECCC----SCHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred -CCCCEEEEcCC----CCHHHHHHHHHHHHhhCCCCeEEEeCC
Confidence 56899997432 122234567778888899988777543
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=89.97 E-value=0.31 Score=46.07 Aligned_cols=92 Identities=15% Similarity=0.292 Sum_probs=56.2
Q ss_pred CCCCC------CEEEEEcCCC-cHHH-HHHH-H-cCCCeEEEEechH----HHHHHHHHHHHcCCCCcEEEEEcc---cc
Q 015534 119 FLFKD------KVVLDVGAGT-GILS-LFCA-K-AGAAHVYAVECSQ----MANMAKQIVEANGFSNVITVLKGK---IE 181 (405)
Q Consensus 119 ~~~~~------~~VLDiGcG~-G~l~-~~la-~-~g~~~V~~vD~s~----~~~~a~~~~~~~~~~~~i~~~~~d---~~ 181 (405)
...+| .+||-+|+|. |.++ ..+| + .|+.+|+++|.++ -++.++ +.|. +.+..+ +.
T Consensus 163 ~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~----~lGa----~~v~~~~~~~~ 234 (357)
T 2b5w_A 163 YASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIE----ELDA----TYVDSRQTPVE 234 (357)
T ss_dssp HHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHH----HTTC----EEEETTTSCGG
T ss_pred CCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHH----HcCC----cccCCCccCHH
Confidence 34577 9999999865 6777 7888 6 6776699999875 244443 3443 222211 11
Q ss_pred ccc-CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 182 EIE-LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 182 ~~~-~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
++. .. +.+|+|+-.. + . ...+....++|+++|+++..
T Consensus 235 ~i~~~~-gg~Dvvid~~-g----~----~~~~~~~~~~l~~~G~iv~~ 272 (357)
T 2b5w_A 235 DVPDVY-EQMDFIYEAT-G----F----PKHAIQSVQALAPNGVGALL 272 (357)
T ss_dssp GHHHHS-CCEEEEEECS-C----C----HHHHHHHHHHEEEEEEEEEC
T ss_pred HHHHhC-CCCCEEEECC-C----C----hHHHHHHHHHHhcCCEEEEE
Confidence 110 12 3799998532 1 1 12345566889999998743
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=89.96 E-value=0.26 Score=46.05 Aligned_cols=58 Identities=17% Similarity=0.191 Sum_probs=42.4
Q ss_pred CcEEEEEcccccc-c-CCCCceeEEEEccccccccC------------hhhHHHHHHHHHhcccCCcEEEecC
Q 015534 171 NVITVLKGKIEEI-E-LPVTKVDIIISEWMGYFLLF------------ENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 171 ~~i~~~~~d~~~~-~-~~~~~~D~Iv~~~~~~~l~~------------~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+..+++++|..+. . +++++||+|++++. |.... ...+...+..+.++|+|||.++...
T Consensus 13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPP-Y~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~ 84 (323)
T 1boo_A 13 SNGSMYIGDSLELLESFPEESISLVMTSPP-FALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDF 84 (323)
T ss_dssp SSEEEEESCHHHHGGGSCSSCEEEEEECCC-CSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceEEeCcHHHHHhhCCCCCeeEEEECCC-CCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEE
Confidence 4578999998763 2 55689999999874 32221 1246678888899999999988653
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=89.78 E-value=0.41 Score=44.60 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=38.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH----HHHHHHHHHHHcC
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ----MANMAKQIVEANG 168 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~----~~~~a~~~~~~~~ 168 (405)
..+|..|||.-||+|..+..+.+.|. +.+|+|+++ .++.+++++...+
T Consensus 240 ~~~~~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 240 SHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp SCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC----
T ss_pred CCCCCEEEecCCCCCHHHHHHHHcCC-cEEEEECCccHHHHHHHHHHHHHHcc
Confidence 46889999999999999999999865 999999996 5677777765543
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=89.75 E-value=0.95 Score=44.06 Aligned_cols=96 Identities=21% Similarity=0.145 Sum_probs=59.1
Q ss_pred cCCCCCCEEEEEcC-C-CcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccc-------------
Q 015534 118 KFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI------------- 180 (405)
Q Consensus 118 ~~~~~~~~VLDiGc-G-~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~------------- 180 (405)
....+|.+||-.|+ | .|.++..+++ .|+ +|++++.++ -++.+++ .|....+.....+.
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga-~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~~~~~~~ 290 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNGGG-IPVAVVSSAQKEAAVRA----LGCDLVINRAELGITDDIADDPRRVVE 290 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCCCEEEHHHHTCCTTGGGCHHHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCCEEEecccccccccccccccccch
Confidence 55778999999997 3 3677777777 566 899999888 7777754 34322111111111
Q ss_pred ------cccc-CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 181 ------EEIE-LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 181 ------~~~~-~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
..+. .....+|+|+... + . ..+....++|++||.++..
T Consensus 291 ~~~~~~~~v~~~~g~g~Dvvid~~-G-------~--~~~~~~~~~l~~~G~iv~~ 335 (447)
T 4a0s_A 291 TGRKLAKLVVEKAGREPDIVFEHT-G-------R--VTFGLSVIVARRGGTVVTC 335 (447)
T ss_dssp HHHHHHHHHHHHHSSCCSEEEECS-C-------H--HHHHHHHHHSCTTCEEEES
T ss_pred hhhHHHHHHHHHhCCCceEEEECC-C-------c--hHHHHHHHHHhcCCEEEEE
Confidence 0000 0125799998632 1 1 2345556789999998754
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=89.36 E-value=3.4 Score=37.51 Aligned_cols=73 Identities=14% Similarity=0.158 Sum_probs=52.5
Q ss_pred CCCCEEEEEcCC--Cc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC---------
Q 015534 121 FKDKVVLDVGAG--TG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL--------- 185 (405)
Q Consensus 121 ~~~~~VLDiGcG--~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------- 185 (405)
..+++||-.|++ .| .++..+++.|+ +|+.++.++ ..+.+++.....+ ++.++.+|+.+...
T Consensus 29 l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~ 104 (293)
T 3grk_A 29 LQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELG---AFVAGHCDVADAASIDAVFETLE 104 (293)
T ss_dssp TTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHT---CEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC---CceEEECCCCCHHHHHHHHHHHH
Confidence 567899999987 33 45666777887 899999988 6666666555543 48899999876430
Q ss_pred -CCCceeEEEEcc
Q 015534 186 -PVTKVDIIISEW 197 (405)
Q Consensus 186 -~~~~~D~Iv~~~ 197 (405)
.-++.|++|.+.
T Consensus 105 ~~~g~iD~lVnnA 117 (293)
T 3grk_A 105 KKWGKLDFLVHAI 117 (293)
T ss_dssp HHTSCCSEEEECC
T ss_pred HhcCCCCEEEECC
Confidence 125799999863
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=89.23 E-value=2.3 Score=38.22 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=51.0
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEech-H-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECS-Q-MANMAKQIVEANGFSNVITVLKGKIEEIEL---------- 185 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s-~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------- 185 (405)
..+++||-.|++.| .++..+++.|+ +|+.++.+ . ..+...+.+...+ .++.++.+|+.+...
T Consensus 29 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~ 105 (271)
T 3v2g_A 29 LAGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAG--GRAVAIRADNRDAEAIEQAIRETVE 105 (271)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence 57889999999887 35666777777 78887654 3 5555555555544 458899999876430
Q ss_pred CCCceeEEEEcc
Q 015534 186 PVTKVDIIISEW 197 (405)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (405)
..++.|++|.+.
T Consensus 106 ~~g~iD~lvnnA 117 (271)
T 3v2g_A 106 ALGGLDILVNSA 117 (271)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCcEEEECC
Confidence 014789999863
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=89.18 E-value=1.2 Score=44.03 Aligned_cols=86 Identities=28% Similarity=0.253 Sum_probs=53.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 120 ~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
..+|++|+-+|+|. |.....+++ .|+ +|+++|.++ -++.|++ .|. ++ .++.+. + ..+|+|+..
T Consensus 271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~~~~~~~A~~----~Ga----~~--~~l~e~-l--~~aDvVi~a 336 (494)
T 3ce6_A 271 LIGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEIDPINALQAMM----EGF----DV--VTVEEA-I--GDADIVVTA 336 (494)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTC----EE--CCHHHH-G--GGCSEEEEC
T ss_pred CCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCC----EE--ecHHHH-H--hCCCEEEEC
Confidence 56889999999976 444444444 676 999999999 6666543 342 22 233333 2 578999974
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.-...+ +. ....+.+|+||+++-
T Consensus 337 tgt~~~-----i~---~~~l~~mk~ggilvn 359 (494)
T 3ce6_A 337 TGNKDI-----IM---LEHIKAMKDHAILGN 359 (494)
T ss_dssp SSSSCS-----BC---HHHHHHSCTTCEEEE
T ss_pred CCCHHH-----HH---HHHHHhcCCCcEEEE
Confidence 211111 11 123366899999874
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=89.05 E-value=0.39 Score=51.58 Aligned_cols=70 Identities=24% Similarity=0.199 Sum_probs=51.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCC-CeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc---------------c
Q 015534 122 KDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI---------------E 184 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~g~-~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~---------------~ 184 (405)
...+++|+-||.|.+++-+.++|. ..|.|+|+++ .++.-+.+.. ...++.+|+.++ .
T Consensus 539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p------~~~~~~~DI~~l~~~~~~~di~~~~~~~ 612 (1002)
T 3swr_A 539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNP------GSTVFTEDCNILLKLVMAGETTNSRGQR 612 (1002)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCT------TSEEECSCHHHHHHHHHHTCSBCTTCCB
T ss_pred CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC------CCccccccHHHHhhhccchhhhhhhhhh
Confidence 345899999999999999999997 6788999999 8776665532 245666776432 1
Q ss_pred CC-CCceeEEEEcc
Q 015534 185 LP-VTKVDIIISEW 197 (405)
Q Consensus 185 ~~-~~~~D~Iv~~~ 197 (405)
++ .+.+|+|+..+
T Consensus 613 lp~~~~vDll~GGp 626 (1002)
T 3swr_A 613 LPQKGDVEMLCGGP 626 (1002)
T ss_dssp CCCTTTCSEEEECC
T ss_pred cccCCCeeEEEEcC
Confidence 22 25799999854
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=88.98 E-value=0.92 Score=37.00 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=41.4
Q ss_pred CCCCEEEEEcCCC-cH-HHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEE
Q 015534 121 FKDKVVLDVGAGT-GI-LSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDII 193 (405)
Q Consensus 121 ~~~~~VLDiGcG~-G~-l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~I 193 (405)
.++.+|+-+|+|. |. ++..+.+.|. +|+++|.++ .++.++. ..+ +.++.+|..+.. .....+|+|
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~---~~g----~~~~~~d~~~~~~l~~~~~~~ad~V 88 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNS---EFS----GFTVVGDAAEFETLKECGMEKADMV 88 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCT---TCC----SEEEESCTTSHHHHHTTTGGGCSEE
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHh---cCC----CcEEEecCCCHHHHHHcCcccCCEE
Confidence 5678999999876 42 3344444666 999999998 6544321 112 345666654321 112579999
Q ss_pred EEc
Q 015534 194 ISE 196 (405)
Q Consensus 194 v~~ 196 (405)
+..
T Consensus 89 i~~ 91 (155)
T 2g1u_A 89 FAF 91 (155)
T ss_dssp EEC
T ss_pred EEE
Confidence 874
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.80 E-value=1.3 Score=38.89 Aligned_cols=73 Identities=27% Similarity=0.287 Sum_probs=53.8
Q ss_pred CCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----------CCC
Q 015534 122 KDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LPV 187 (405)
Q Consensus 122 ~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~ 187 (405)
.+++||-.|++.| .++..+++.|+ +|++++.++ .++.+.+.+...+ .++.++..|+.+.. -..
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (247)
T 3lyl_A 4 NEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAEN 80 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 5678999998776 35666667777 899999998 7777766666655 45899999987643 012
Q ss_pred CceeEEEEcc
Q 015534 188 TKVDIIISEW 197 (405)
Q Consensus 188 ~~~D~Iv~~~ 197 (405)
++.|++|.+.
T Consensus 81 ~~id~li~~A 90 (247)
T 3lyl_A 81 LAIDILVNNA 90 (247)
T ss_dssp CCCSEEEECC
T ss_pred CCCCEEEECC
Confidence 5789999863
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.79 E-value=2.1 Score=38.05 Aligned_cols=75 Identities=12% Similarity=0.124 Sum_probs=53.0
Q ss_pred CCCCCCEEEEEcCC--Cc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-------
Q 015534 119 FLFKDKVVLDVGAG--TG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL------- 185 (405)
Q Consensus 119 ~~~~~~~VLDiGcG--~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~------- 185 (405)
...++++||-.|++ .| .++..+++.|+ +|+.++.+. ..+.+++.....+ .+.++.+|+.+...
T Consensus 10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~ 85 (271)
T 3ek2_A 10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFG---SELVFPCDVADDAQIDALFAS 85 (271)
T ss_dssp CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHH
Confidence 34678899999976 44 34566666777 899999887 6666666655543 37888999876430
Q ss_pred ---CCCceeEEEEcc
Q 015534 186 ---PVTKVDIIISEW 197 (405)
Q Consensus 186 ---~~~~~D~Iv~~~ 197 (405)
..++.|++|.+.
T Consensus 86 ~~~~~g~id~lv~nA 100 (271)
T 3ek2_A 86 LKTHWDSLDGLVHSI 100 (271)
T ss_dssp HHHHCSCEEEEEECC
T ss_pred HHHHcCCCCEEEECC
Confidence 125799999864
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=88.78 E-value=0.2 Score=47.97 Aligned_cols=98 Identities=17% Similarity=0.102 Sum_probs=52.8
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 121 ~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
.++++|+-+|+|. |......++ .|+ +|+++|.++ -++.+++.+ +. .+.....+..++...-..+|+|+...
T Consensus 166 l~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~~---g~--~~~~~~~~~~~l~~~l~~aDvVi~~~ 239 (377)
T 2vhw_A 166 VEPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAEF---CG--RIHTRYSSAYELEGAVKRADLVIGAV 239 (377)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHT---TT--SSEEEECCHHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhc---CC--eeEeccCCHHHHHHHHcCCCEEEECC
Confidence 4678999999965 443333344 677 999999999 777665432 21 12222111111110014689999732
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
... .. .....+.....+.+||||+++-
T Consensus 240 ~~p-~~--~t~~li~~~~l~~mk~g~~iV~ 266 (377)
T 2vhw_A 240 LVP-GA--KAPKLVSNSLVAHMKPGAVLVD 266 (377)
T ss_dssp CCT-TS--CCCCCBCHHHHTTSCTTCEEEE
T ss_pred CcC-CC--CCcceecHHHHhcCCCCcEEEE
Confidence 100 00 0000112334477899998874
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=88.73 E-value=0.56 Score=42.90 Aligned_cols=87 Identities=14% Similarity=0.138 Sum_probs=49.9
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc
Q 015534 108 KSYQNVIYQNKFLFKDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (405)
Q Consensus 108 ~~~~~~i~~~~~~~~~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (405)
..+...+........+++||-+|+|. | ..+..+++.|+++|+.++.++ -.+...+.+......-.+.. .+..++.
T Consensus 112 ~G~~~~l~~~~~~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~--~~~~~l~ 189 (283)
T 3jyo_A 112 SGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVG--VDARGIE 189 (283)
T ss_dssp HHHHHHHHHHCTTCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEE--ECSTTHH
T ss_pred HHHHHHHHHhCcCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEE--cCHHHHH
Confidence 35556665544456788999999972 1 234455667888999999988 55544444443221112332 2222221
Q ss_pred CCCCceeEEEEc
Q 015534 185 LPVTKVDIIISE 196 (405)
Q Consensus 185 ~~~~~~D~Iv~~ 196 (405)
.....+|+||..
T Consensus 190 ~~l~~~DiVIna 201 (283)
T 3jyo_A 190 DVIAAADGVVNA 201 (283)
T ss_dssp HHHHHSSEEEEC
T ss_pred HHHhcCCEEEEC
Confidence 111469999974
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.53 E-value=0.3 Score=45.44 Aligned_cols=93 Identities=20% Similarity=0.178 Sum_probs=56.4
Q ss_pred CCCCCC-EEEEEcC--CCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccc-cc-c-cCCCCce
Q 015534 119 FLFKDK-VVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI-EE-I-ELPVTKV 190 (405)
Q Consensus 119 ~~~~~~-~VLDiGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~-~~-~-~~~~~~~ 190 (405)
...++. +||-+|+ |.|.++..+++ .|+ +|++++.++ -++.+++ .|... + +-..+. .+ + ....+.+
T Consensus 145 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~----lGa~~-~-i~~~~~~~~~~~~~~~~~~ 217 (328)
T 1xa0_A 145 GLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRV----LGAKE-V-LAREDVMAERIRPLDKQRW 217 (328)
T ss_dssp TCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHH----TTCSE-E-EECC---------CCSCCE
T ss_pred CCCCCCceEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----cCCcE-E-EecCCcHHHHHHHhcCCcc
Confidence 455664 8999997 44778888887 676 799999998 7777764 34321 1 111111 11 1 1122579
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
|+|+-.. + . . .+....++|+++|+++..
T Consensus 218 d~vid~~-g----~-~----~~~~~~~~l~~~G~~v~~ 245 (328)
T 1xa0_A 218 AAAVDPV-G----G-R----TLATVLSRMRYGGAVAVS 245 (328)
T ss_dssp EEEEECS-T----T-T----THHHHHHTEEEEEEEEEC
T ss_pred cEEEECC-c----H-H----HHHHHHHhhccCCEEEEE
Confidence 9998532 1 1 1 234455889999998743
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=88.43 E-value=0.38 Score=45.78 Aligned_cols=99 Identities=16% Similarity=0.171 Sum_probs=53.0
Q ss_pred CCCCEEEEEcCCC-cHHHHHHH-HcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 121 FKDKVVLDVGAGT-GILSLFCA-KAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 121 ~~~~~VLDiGcG~-G~l~~~la-~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
.++++|+-+|+|. |......+ ..|+ +|+++|.++ -++.+++.. +. .+.....+..++.-.-..+|+|+...
T Consensus 164 l~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~~---g~--~~~~~~~~~~~l~~~~~~~DvVi~~~ 237 (369)
T 2eez_A 164 VAPASVVILGGGTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDVF---GG--RVITLTATEANIKKSVQHADLLIGAV 237 (369)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHT---TT--SEEEEECCHHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhc---Cc--eEEEecCCHHHHHHHHhCCCEEEECC
Confidence 4568999999964 33333333 3677 999999998 776655432 22 23332222222210014689998743
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
... .......+.....+.+++||.++--
T Consensus 238 g~~---~~~~~~li~~~~l~~mk~gg~iV~v 265 (369)
T 2eez_A 238 LVP---GAKAPKLVTRDMLSLMKEGAVIVDV 265 (369)
T ss_dssp C----------CCSCHHHHTTSCTTCEEEEC
T ss_pred CCC---ccccchhHHHHHHHhhcCCCEEEEE
Confidence 211 0000011234455778999988743
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=88.20 E-value=0.34 Score=45.09 Aligned_cols=92 Identities=24% Similarity=0.221 Sum_probs=57.7
Q ss_pred CCCCCC-EEEEEcC--CCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEc-cc-cc-c-cCCCCc
Q 015534 119 FLFKDK-VVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KI-EE-I-ELPVTK 189 (405)
Q Consensus 119 ~~~~~~-~VLDiGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~-~~-~-~~~~~~ 189 (405)
...++. +||-+|+ |.|.++..+++ .|+ +|++++.++ -++.+++. |.. .++.. +. .+ + ......
T Consensus 146 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~l----Ga~---~v~~~~~~~~~~~~~~~~~~ 217 (330)
T 1tt7_A 146 GLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQL----GAS---EVISREDVYDGTLKALSKQQ 217 (330)
T ss_dssp TCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHH----TCS---EEEEHHHHCSSCCCSSCCCC
T ss_pred CcCCCCceEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCc---EEEECCCchHHHHHHhhcCC
Confidence 455664 8999997 34777777777 677 799999998 88877652 332 12221 11 11 1 122357
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+|+|+... + . ..+....++|+++|+++..
T Consensus 218 ~d~vid~~-g-------~--~~~~~~~~~l~~~G~iv~~ 246 (330)
T 1tt7_A 218 WQGAVDPV-G-------G--KQLASLLSKIQYGGSVAVS 246 (330)
T ss_dssp EEEEEESC-C-------T--HHHHHHHTTEEEEEEEEEC
T ss_pred ccEEEECC-c-------H--HHHHHHHHhhcCCCEEEEE
Confidence 99998532 1 1 1345566899999998743
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=88.13 E-value=1.1 Score=40.76 Aligned_cols=97 Identities=18% Similarity=0.180 Sum_probs=61.4
Q ss_pred CEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc---------CCC--------CcEEEEEcccccc
Q 015534 124 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN---------GFS--------NVITVLKGKIEEI 183 (405)
Q Consensus 124 ~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~---------~~~--------~~i~~~~~d~~~~ 183 (405)
++|.-||+|. | .++..+++.|. +|+.+|.++ .++.+.+.+... ++. .++++ ..+..+.
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~~~ 82 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLAQA 82 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHHHH
Confidence 4788999987 3 45666677777 999999999 888777653221 110 11332 2333332
Q ss_pred cCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
-...|+|+.... ........++..+...++|+.+++-..
T Consensus 83 ---~~~aDlVi~av~----~~~~~~~~v~~~l~~~~~~~~il~s~t 121 (283)
T 4e12_A 83 ---VKDADLVIEAVP----ESLDLKRDIYTKLGELAPAKTIFATNS 121 (283)
T ss_dssp ---TTTCSEEEECCC----SCHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred ---hccCCEEEEecc----CcHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 156899996432 122355677888888899988776433
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=88.10 E-value=2 Score=41.02 Aligned_cols=70 Identities=14% Similarity=0.236 Sum_probs=45.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc--------CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015534 122 KDKVVLDVGAGTGILSLFCAKA--------GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~~--------g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (405)
..-.|+|+|+|+|.++.-+.+. ...+++.||+|+ ..+.-++.+... ++|.+. .++.+++ ...=+
T Consensus 80 ~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~---~~v~W~-~~l~~lp---~~~~~ 152 (387)
T 1zkd_A 80 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI---RNIHWH-DSFEDVP---EGPAV 152 (387)
T ss_dssp SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC---SSEEEE-SSGGGSC---CSSEE
T ss_pred CCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC---CCeEEe-CChhhcC---CCCeE
Confidence 3457999999999998777652 133899999999 777666555432 246655 3344443 22457
Q ss_pred EEEccc
Q 015534 193 IISEWM 198 (405)
Q Consensus 193 Iv~~~~ 198 (405)
|+++-+
T Consensus 153 viANE~ 158 (387)
T 1zkd_A 153 ILANEY 158 (387)
T ss_dssp EEEESS
T ss_pred EEeccc
Confidence 777533
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=88.02 E-value=1 Score=42.64 Aligned_cols=90 Identities=14% Similarity=0.043 Sum_probs=56.1
Q ss_pred CCCCEEEEEcCC--CcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CCCCcee
Q 015534 121 FKDKVVLDVGAG--TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTKVD 191 (405)
Q Consensus 121 ~~~~~VLDiGcG--~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~D 191 (405)
.+|.+||-+|++ .|.++..+++ .|+ +|+++. ++ -++.+++ .|.. .++...-.++. ...+.+|
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~-~~~~~~~~~~----lGa~---~vi~~~~~~~~~~v~~~t~g~~d 233 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGY-IPIATC-SPHNFDLAKS----RGAE---EVFDYRAPNLAQTIRTYTKNNLR 233 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHH----TTCS---EEEETTSTTHHHHHHHHTTTCCC
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe-CHHHHHHHHH----cCCc---EEEECCCchHHHHHHHHccCCcc
Confidence 788999999993 5888888888 676 888885 77 7776654 3432 23332222111 1124599
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcc-cCCcEEEec
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWL-VDDGIVLPD 228 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~L-kpgG~lip~ 228 (405)
+|+-.. + . +..+....+.| ++||+++..
T Consensus 234 ~v~d~~-g----~----~~~~~~~~~~l~~~~G~iv~~ 262 (371)
T 3gqv_A 234 YALDCI-T----N----VESTTFCFAAIGRAGGHYVSL 262 (371)
T ss_dssp EEEESS-C----S----HHHHHHHHHHSCTTCEEEEES
T ss_pred EEEECC-C----c----hHHHHHHHHHhhcCCCEEEEE
Confidence 998532 1 1 12344455677 699998754
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=87.91 E-value=1.5 Score=38.89 Aligned_cols=74 Identities=18% Similarity=0.108 Sum_probs=55.0
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-----C----C
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P----V 187 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~----~ 187 (405)
..+++||-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+...+ .++.++.+|+.+... . .
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAH 81 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhh
Confidence 45789999999887 35666677787 899999998 7776666666654 469999999876431 0 1
Q ss_pred CceeEEEEcc
Q 015534 188 TKVDIIISEW 197 (405)
Q Consensus 188 ~~~D~Iv~~~ 197 (405)
+..|++|.+.
T Consensus 82 g~id~lv~nA 91 (252)
T 3h7a_A 82 APLEVTIFNV 91 (252)
T ss_dssp SCEEEEEECC
T ss_pred CCceEEEECC
Confidence 5789999863
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=87.70 E-value=3.7 Score=37.31 Aligned_cols=80 Identities=19% Similarity=0.249 Sum_probs=48.6
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (405)
.+...|........+++||-+|+|. | ..+..+++.|+.+|+.++.++ -.+...+.+...+ .+... +..++.
T Consensus 112 G~~~~L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~---~~~~~--~~~~l~- 185 (281)
T 3o8q_A 112 GLVQDLLAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYG---EVKAQ--AFEQLK- 185 (281)
T ss_dssp HHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGS---CEEEE--EGGGCC-
T ss_pred HHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccC---CeeEe--eHHHhc-
Confidence 4555555433345788999999972 1 223444557878999999987 5544444443322 24444 334432
Q ss_pred CCCceeEEEEc
Q 015534 186 PVTKVDIIISE 196 (405)
Q Consensus 186 ~~~~~D~Iv~~ 196 (405)
..+|+||+.
T Consensus 186 --~~aDiIIna 194 (281)
T 3o8q_A 186 --QSYDVIINS 194 (281)
T ss_dssp --SCEEEEEEC
T ss_pred --CCCCEEEEc
Confidence 679999984
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=87.25 E-value=2.2 Score=37.60 Aligned_cols=74 Identities=20% Similarity=0.312 Sum_probs=54.4
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (405)
..+++||-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+...+ .++.++.+|+.+... .
T Consensus 7 ~~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAE 83 (253)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 46789999998876 45666667777 899999998 7776666666554 468899999976430 0
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
.+..|++|.+.
T Consensus 84 ~g~id~li~~A 94 (253)
T 3qiv_A 84 FGGIDYLVNNA 94 (253)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEECC
Confidence 14799999864
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=87.19 E-value=2 Score=37.13 Aligned_cols=86 Identities=14% Similarity=0.077 Sum_probs=50.9
Q ss_pred EEEEEcCCCcHHHHHHH----HcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEE
Q 015534 125 VVLDVGAGTGILSLFCA----KAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIIS 195 (405)
Q Consensus 125 ~VLDiGcG~G~l~~~la----~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv~ 195 (405)
+|+-+|+| .++..++ +.|. .|+.+|.++ .++.+.+. .+ +.++.+|..+.. ..-..+|+|++
T Consensus 2 ~iiIiG~G--~~G~~la~~L~~~g~-~v~vid~~~~~~~~l~~~---~~----~~~i~gd~~~~~~l~~a~i~~ad~vi~ 71 (218)
T 3l4b_C 2 KVIIIGGE--TTAYYLARSMLSRKY-GVVIINKDRELCEEFAKK---LK----ATIIHGDGSHKEILRDAEVSKNDVVVI 71 (218)
T ss_dssp CEEEECCH--HHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHH---SS----SEEEESCTTSHHHHHHHTCCTTCEEEE
T ss_pred EEEEECCC--HHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHH---cC----CeEEEcCCCCHHHHHhcCcccCCEEEE
Confidence 47777864 4444444 4555 899999999 76654332 22 578889887642 12357899987
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
.. .......++....+.+.|...++
T Consensus 72 ~~------~~d~~n~~~~~~a~~~~~~~~ii 96 (218)
T 3l4b_C 72 LT------PRDEVNLFIAQLVMKDFGVKRVV 96 (218)
T ss_dssp CC------SCHHHHHHHHHHHHHTSCCCEEE
T ss_pred ec------CCcHHHHHHHHHHHHHcCCCeEE
Confidence 32 12233334444445555666555
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.06 E-value=2.7 Score=37.46 Aligned_cols=74 Identities=23% Similarity=0.302 Sum_probs=55.7
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (405)
..+++||-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+...+ .++.++.+|+.+... .
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 85 (264)
T 3ucx_A 9 LTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMKA 85 (264)
T ss_dssp TTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 56789999999887 45666777887 899999998 7777666666655 468999999976430 1
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
-++.|++|.+.
T Consensus 86 ~g~id~lv~nA 96 (264)
T 3ucx_A 86 YGRVDVVINNA 96 (264)
T ss_dssp TSCCSEEEECC
T ss_pred cCCCcEEEECC
Confidence 25799999864
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.82 E-value=2.2 Score=38.70 Aligned_cols=76 Identities=20% Similarity=0.203 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCCcH---HHHHHHHcCC--CeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------
Q 015534 122 KDKVVLDVGAGTGI---LSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---------- 185 (405)
Q Consensus 122 ~~~~VLDiGcG~G~---l~~~la~~g~--~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------- 185 (405)
.+++||-.|++.|+ ++..+++.|+ .+|+.++.++ .++.+.+.+....-..++.++.+|+.+...
T Consensus 32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 111 (287)
T 3rku_A 32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ 111 (287)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 57899999988773 3445555555 4999999998 776666655554323568999999976531
Q ss_pred CCCceeEEEEcc
Q 015534 186 PVTKVDIIISEW 197 (405)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (405)
.-+..|++|.+.
T Consensus 112 ~~g~iD~lVnnA 123 (287)
T 3rku_A 112 EFKDIDILVNNA 123 (287)
T ss_dssp GGCSCCEEEECC
T ss_pred hcCCCCEEEECC
Confidence 124799999864
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=86.63 E-value=4 Score=39.91 Aligned_cols=98 Identities=11% Similarity=0.178 Sum_probs=61.6
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCCeEEEEechH--HHHHHHHHH---HHcC-CC--------CcEEEEEcccccccCCC
Q 015534 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ--MANMAKQIV---EANG-FS--------NVITVLKGKIEEIELPV 187 (405)
Q Consensus 124 ~~VLDiGcG~--G~l~~~la~~g~~~V~~vD~s~--~~~~a~~~~---~~~~-~~--------~~i~~~~~d~~~~~~~~ 187 (405)
.+|.-||+|+ +.++..+++.|. .|+.+|.++ .....++.+ .+.| +. .++++. .|...+
T Consensus 55 ~kVaVIGaG~MG~~IA~~la~aG~-~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t-~dl~al---- 128 (460)
T 3k6j_A 55 NSVAIIGGGTMGKAMAICFGLAGI-ETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKIT-SDFHKL---- 128 (460)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEE-SCGGGC----
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEe-CCHHHH----
Confidence 5899999997 366777888887 999999998 333222222 1222 11 235443 344322
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCce
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
...|+||.... ........++..+...++|+.+++-.+.+
T Consensus 129 ~~aDlVIeAVp----e~~~vk~~v~~~l~~~~~~~aIlasnTSs 168 (460)
T 3k6j_A 129 SNCDLIVESVI----EDMKLKKELFANLENICKSTCIFGTNTSS 168 (460)
T ss_dssp TTCSEEEECCC----SCHHHHHHHHHHHHTTSCTTCEEEECCSS
T ss_pred ccCCEEEEcCC----CCHHHHHHHHHHHHhhCCCCCEEEecCCC
Confidence 57899996432 12234567788888999999888754433
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=86.57 E-value=7.3 Score=34.69 Aligned_cols=80 Identities=11% Similarity=-0.014 Sum_probs=53.1
Q ss_pred CEEEEEcCCCcHHHHHHHH----cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 124 KVVLDVGAGTGILSLFCAK----AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 124 ~~VLDiGcG~G~l~~~la~----~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
++||-.|+ |.++..+++ .|. +|++++.++ -...... ..++++.+|+.++. ...+|+||....
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~--------~~~~~~~~D~~d~~--~~~~d~vi~~a~ 72 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRA--------SGAEPLLWPGEEPS--LDGVTHLLISTA 72 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHH--------TTEEEEESSSSCCC--CTTCCEEEECCC
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhh--------CCCeEEEecccccc--cCCCCEEEECCC
Confidence 58999995 777776665 455 999999988 5543322 24899999999876 478999998432
Q ss_pred cccccChhhHHHHHHHHHh
Q 015534 199 GYFLLFENMLNTVLYARDK 217 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~ 217 (405)
...........+++.+.+
T Consensus 73 -~~~~~~~~~~~l~~a~~~ 90 (286)
T 3ius_A 73 -PDSGGDPVLAALGDQIAA 90 (286)
T ss_dssp -CBTTBCHHHHHHHHHHHH
T ss_pred -ccccccHHHHHHHHHHHh
Confidence 111122334556665544
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=86.53 E-value=2.2 Score=39.42 Aligned_cols=76 Identities=18% Similarity=0.189 Sum_probs=55.8
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----C-----C
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----P 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~ 186 (405)
..+++||-.|++.| .++..+++.|+ +|++++.++ -++.+.+.+...+...++.++..|+.+.. + .
T Consensus 6 l~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 84 (319)
T 3ioy_A 6 FAGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEAR 84 (319)
T ss_dssp CTTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 46789999999887 35666667777 899999998 77777666665554346999999997643 0 0
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
.+.+|++|.+.
T Consensus 85 ~g~id~lv~nA 95 (319)
T 3ioy_A 85 FGPVSILCNNA 95 (319)
T ss_dssp TCCEEEEEECC
T ss_pred CCCCCEEEECC
Confidence 25789999863
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.53 E-value=2.6 Score=37.82 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-----C-----C
Q 015534 122 KDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P-----V 187 (405)
Q Consensus 122 ~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~-----~ 187 (405)
.+++||-.|++.| .++..+++.|+ +|++++.++ -++...+.+...+.+.++.++.+|+.+... . .
T Consensus 31 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 109 (279)
T 1xg5_A 31 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH 109 (279)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence 5689999997765 34555566776 899999988 766666666666655568899999876431 0 1
Q ss_pred CceeEEEEcc
Q 015534 188 TKVDIIISEW 197 (405)
Q Consensus 188 ~~~D~Iv~~~ 197 (405)
+.+|+||.+.
T Consensus 110 g~iD~vi~~A 119 (279)
T 1xg5_A 110 SGVDICINNA 119 (279)
T ss_dssp CCCSEEEECC
T ss_pred CCCCEEEECC
Confidence 3689999853
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=86.13 E-value=2 Score=38.92 Aligned_cols=74 Identities=20% Similarity=0.248 Sum_probs=52.9
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (405)
..+++||-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+...+ .++.++.+|+.+... .
T Consensus 26 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 102 (283)
T 3v8b_A 26 QPSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAG--GQAIALEADVSDELQMRNAVRDLVLK 102 (283)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 46789999998887 34566667777 999999998 7666655554433 468999999876420 0
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
.++.|++|.+.
T Consensus 103 ~g~iD~lVnnA 113 (283)
T 3v8b_A 103 FGHLDIVVANA 113 (283)
T ss_dssp HSCCCEEEECC
T ss_pred hCCCCEEEECC
Confidence 14799999863
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=85.94 E-value=0.59 Score=43.51 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=40.4
Q ss_pred CcEEEE-Eccccccc--CCCCceeEEEEcccccccc---------ChhhHHHHHHHHHhcccCCcEEEec
Q 015534 171 NVITVL-KGKIEEIE--LPVTKVDIIISEWMGYFLL---------FENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 171 ~~i~~~-~~d~~~~~--~~~~~~D~Iv~~~~~~~l~---------~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
....++ ++|..+.. ++.+++|+|++++. |... ....+...+..+.++|+|||.++..
T Consensus 37 ~~~~l~i~gD~l~~L~~l~~~svDlI~tDPP-Y~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~ 105 (319)
T 1eg2_A 37 TTRHVYDVCDCLDTLAKLPDDSVQLIICDPP-YNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF 105 (319)
T ss_dssp CEEEEEEECCHHHHHHTSCTTCEEEEEECCC-SBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccceEEECCcHHHHHHhCccCCcCEEEECCC-CCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 346778 99987642 45679999999874 3332 1124566777889999999998764
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=85.82 E-value=3.3 Score=37.19 Aligned_cols=70 Identities=10% Similarity=0.133 Sum_probs=50.7
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc---------CCC
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---------LPV 187 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---------~~~ 187 (405)
..+++||-.|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+ + .++.++..|+.+.. ...
T Consensus 28 l~~k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~---~--~~~~~~~~Dl~~~~~v~~~~~~~~~~ 101 (281)
T 3ppi_A 28 FEGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGKALADEL---G--NRAEFVSTNVTSEDSVLAAIEAANQL 101 (281)
T ss_dssp GTTEEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---C--TTEEEEECCTTCHHHHHHHHHHHTTS
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHh---C--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 46789999998887 35666667777 899999988 665554443 2 46899999987643 112
Q ss_pred CceeEEEEc
Q 015534 188 TKVDIIISE 196 (405)
Q Consensus 188 ~~~D~Iv~~ 196 (405)
+..|++|.+
T Consensus 102 ~~id~lv~~ 110 (281)
T 3ppi_A 102 GRLRYAVVA 110 (281)
T ss_dssp SEEEEEEEC
T ss_pred CCCCeEEEc
Confidence 578999976
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=85.75 E-value=2.7 Score=38.38 Aligned_cols=74 Identities=16% Similarity=0.227 Sum_probs=55.3
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-----C-----
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P----- 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~----- 186 (405)
..+++||-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+...+ .++.++..|+.+... .
T Consensus 29 l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 105 (301)
T 3tjr_A 29 FDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAFRL 105 (301)
T ss_dssp STTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence 56789999999887 45666667777 899999998 7777766666655 458999999977531 0
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
.+.+|++|.+.
T Consensus 106 ~g~id~lvnnA 116 (301)
T 3tjr_A 106 LGGVDVVFSNA 116 (301)
T ss_dssp HSSCSEEEECC
T ss_pred CCCCCEEEECC
Confidence 14789999863
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=85.71 E-value=4.1 Score=39.58 Aligned_cols=86 Identities=23% Similarity=0.227 Sum_probs=51.5
Q ss_pred CCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015534 119 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (405)
....|++|+-+|+|. |......++ .|+ +|+++|.++ ....+. ..| +++ .++.++. ...|+|+.
T Consensus 243 ~~L~GKTVgVIG~G~IGr~vA~~lrafGa-~Viv~d~dp~~a~~A~----~~G----~~v--v~LeElL---~~ADIVv~ 308 (464)
T 3n58_A 243 VMMAGKVAVVCGYGDVGKGSAQSLAGAGA-RVKVTEVDPICALQAA----MDG----FEV--VTLDDAA---STADIVVT 308 (464)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHH----HTT----CEE--CCHHHHG---GGCSEEEE
T ss_pred CcccCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCcchhhHHH----hcC----cee--ccHHHHH---hhCCEEEE
Confidence 356889999999987 544444444 666 999999998 543332 223 233 2444432 57899986
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
..-...+.. ......+|||++++
T Consensus 309 atgt~~lI~--------~e~l~~MK~GAILI 331 (464)
T 3n58_A 309 TTGNKDVIT--------IDHMRKMKDMCIVG 331 (464)
T ss_dssp CCSSSSSBC--------HHHHHHSCTTEEEE
T ss_pred CCCCccccC--------HHHHhcCCCCeEEE
Confidence 321111211 22336689999887
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=85.65 E-value=2.4 Score=37.61 Aligned_cols=74 Identities=20% Similarity=0.289 Sum_probs=54.8
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-----C-----
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P----- 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~----- 186 (405)
..+++||-.|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+...+ .++.++..|+.+... .
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 86 (256)
T 3gaf_A 10 LNDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAG--GKAIGLECNVTDEQHREAVIKAALDQ 86 (256)
T ss_dssp CTTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 46789999998887 34666677777 899999998 7776666666655 468999999876431 0
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
-++.|++|.+.
T Consensus 87 ~g~id~lv~nA 97 (256)
T 3gaf_A 87 FGKITVLVNNA 97 (256)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEECC
Confidence 14789999863
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=85.53 E-value=4.3 Score=36.40 Aligned_cols=84 Identities=18% Similarity=0.094 Sum_probs=53.9
Q ss_pred EEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccccc
Q 015534 125 VVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (405)
Q Consensus 125 ~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~ 201 (405)
+|.-||||. | .++..+++.|. +|+++|.++ .++.+. ..+... . ...+..+. ...|+|+....
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~----~~g~~~--~-~~~~~~~~----~~~D~vi~av~--- 66 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAV----ERQLVD--E-AGQDLSLL----QTAKIIFLCTP--- 66 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHH----HTTSCS--E-EESCGGGG----TTCSEEEECSC---
T ss_pred EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH----hCCCCc--c-ccCCHHHh----CCCCEEEEECC---
Confidence 688899886 3 44555666776 899999998 766543 234322 1 22343333 46899997432
Q ss_pred ccChhhHHHHHHHHHhcccCCcEEE
Q 015534 202 LLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
......++..+...++|+..++
T Consensus 67 ---~~~~~~~~~~l~~~~~~~~~vv 88 (279)
T 2f1k_A 67 ---IQLILPTLEKLIPHLSPTAIVT 88 (279)
T ss_dssp ---HHHHHHHHHHHGGGSCTTCEEE
T ss_pred ---HHHHHHHHHHHHhhCCCCCEEE
Confidence 2355677777878888887665
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=85.50 E-value=0.33 Score=46.33 Aligned_cols=40 Identities=28% Similarity=0.403 Sum_probs=31.0
Q ss_pred CCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHH
Q 015534 122 KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQ 162 (405)
Q Consensus 122 ~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~ 162 (405)
++.+|+-+|+|. |..+...++ .|+ +|+++|.++ -++.+++
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~ 225 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGA-KTTGYDVRPEVAEQVRS 225 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSGGGHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 678999999986 555554444 677 899999999 7777765
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=85.45 E-value=2.2 Score=40.21 Aligned_cols=95 Identities=14% Similarity=0.095 Sum_probs=59.3
Q ss_pred CCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHH------HcCCCCcEEEEEcccccccCCCCceeEE
Q 015534 123 DKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVE------ANGFSNVITVLKGKIEEIELPVTKVDII 193 (405)
Q Consensus 123 ~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~------~~~~~~~i~~~~~d~~~~~~~~~~~D~I 193 (405)
..+|.-||+|. | .++..+++.|. .|+.+|.++ .++..++.-. ...++.++.+. .|..+.. ...|+|
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~-~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t-~d~~ea~---~~aDvV 103 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQ-KVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAY-CDLKASL---EGVTDI 103 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTC-CEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEE-SCHHHHH---TTCCEE
T ss_pred CCeEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEE-CCHHHHH---hcCCEE
Confidence 35799999987 3 45666666765 899999998 7666554311 01122234332 2332221 468999
Q ss_pred EEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+... ....+..++..+...++|+..++..
T Consensus 104 ilaV------p~~~~~~vl~~i~~~l~~~~ivvs~ 132 (356)
T 3k96_A 104 LIVV------PSFAFHEVITRMKPLIDAKTRIAWG 132 (356)
T ss_dssp EECC------CHHHHHHHHHHHGGGCCTTCEEEEC
T ss_pred EECC------CHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 8643 2246678888888889988877643
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=85.18 E-value=4.3 Score=36.46 Aligned_cols=87 Identities=18% Similarity=0.214 Sum_probs=53.5
Q ss_pred EEEEEcCCC-c-HHHHHHHHcCC-CeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC-ceeEEEEcccc
Q 015534 125 VVLDVGAGT-G-ILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT-KVDIIISEWMG 199 (405)
Q Consensus 125 ~VLDiGcG~-G-~l~~~la~~g~-~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~D~Iv~~~~~ 199 (405)
+|.-||+|. | .++..+++.|. .+|+++|.++ .++.++ ..|... . ...+..+.. . ..|+|+....
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~----~~g~~~--~-~~~~~~~~~---~~~aDvVilavp- 71 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV----DLGIID--E-GTTSIAKVE---DFSPDFVMLSSP- 71 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH----HTTSCS--E-EESCGGGGG---GTCCSEEEECSC-
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH----HCCCcc--c-ccCCHHHHh---cCCCCEEEEcCC-
Confidence 688899886 3 44555566664 3799999998 766554 334321 1 123332221 4 6899987432
Q ss_pred ccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
......++..+...++++.+++.
T Consensus 72 -----~~~~~~v~~~l~~~l~~~~iv~~ 94 (281)
T 2g5c_A 72 -----VRTFREIAKKLSYILSEDATVTD 94 (281)
T ss_dssp -----HHHHHHHHHHHHHHSCTTCEEEE
T ss_pred -----HHHHHHHHHHHHhhCCCCcEEEE
Confidence 23445666777778888886663
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=85.08 E-value=6.2 Score=38.84 Aligned_cols=95 Identities=15% Similarity=0.163 Sum_probs=61.9
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHH-------cCC-C--------CcEEEEEccccccc
Q 015534 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-------NGF-S--------NVITVLKGKIEEIE 184 (405)
Q Consensus 124 ~~VLDiGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~-------~~~-~--------~~i~~~~~d~~~~~ 184 (405)
.+|.-||+|. +.++..+++.|. .|+.+|.++ .++.+.+.+.. .|. . .++++. .|...+
T Consensus 6 ~kVgVIGaG~MG~~IA~~la~aG~-~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 82 (483)
T 3mog_A 6 QTVAVIGSGTMGAGIAEVAASHGH-QVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPV-TDIHAL- 82 (483)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEE-CCGGGG-
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEe-CCHHHh-
Confidence 3688899987 356777778887 899999999 88887765322 111 0 134433 333322
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
...|+||.... ........++..+...++|+.+++-.
T Consensus 83 ---~~aDlVIeAVp----e~~~vk~~v~~~l~~~~~~~~Ilasn 119 (483)
T 3mog_A 83 ---AAADLVIEAAS----ERLEVKKALFAQLAEVCPPQTLLTTN 119 (483)
T ss_dssp ---GGCSEEEECCC----CCHHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred ---cCCCEEEEcCC----CcHHHHHHHHHHHHHhhccCcEEEec
Confidence 57899996432 12224457788888889999887643
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=85.06 E-value=2.7 Score=37.36 Aligned_cols=75 Identities=13% Similarity=0.168 Sum_probs=54.2
Q ss_pred CCCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-----C----
Q 015534 120 LFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P---- 186 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~---- 186 (405)
...+++||-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+...+ .++.++..|+.+... .
T Consensus 26 ~l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~ 102 (262)
T 3rkr_A 26 SLSGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAFATGVLA 102 (262)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHHH
Confidence 356789999998776 34555666777 899999998 7777666666654 468999999876431 0
Q ss_pred -CCceeEEEEcc
Q 015534 187 -VTKVDIIISEW 197 (405)
Q Consensus 187 -~~~~D~Iv~~~ 197 (405)
.++.|++|.+.
T Consensus 103 ~~g~id~lv~~A 114 (262)
T 3rkr_A 103 AHGRCDVLVNNA 114 (262)
T ss_dssp HHSCCSEEEECC
T ss_pred hcCCCCEEEECC
Confidence 14689999864
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=85.04 E-value=3.1 Score=37.68 Aligned_cols=71 Identities=14% Similarity=0.236 Sum_probs=52.2
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (405)
.+|+++|--|++.| ..+..+++.|+ +|+.+|.++ .++.+.+.+ + .++..+.+|+.+... .
T Consensus 27 L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~---g--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 100 (273)
T 4fgs_A 27 LNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEI---G--GGAVGIQADSANLAELDRLYEKVKAE 100 (273)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---C--TTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred hCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---C--CCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 67899999999988 45677777888 999999998 666554333 3 457788889876430 1
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
-++.|++|.+.
T Consensus 101 ~G~iDiLVNNA 111 (273)
T 4fgs_A 101 AGRIDVLFVNA 111 (273)
T ss_dssp HSCEEEEEECC
T ss_pred cCCCCEEEECC
Confidence 26799999863
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=85.00 E-value=2.6 Score=39.67 Aligned_cols=84 Identities=20% Similarity=0.194 Sum_probs=51.3
Q ss_pred CCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEech----HHHHHHHHHHHHcCCCCcEEEEEcccccccCC------CCce
Q 015534 123 DKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECS----QMANMAKQIVEANGFSNVITVLKGKIEEIELP------VTKV 190 (405)
Q Consensus 123 ~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s----~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~------~~~~ 190 (405)
+.+||-+|+|. |.++..+++ .|+ +|+++|.+ +-++.+++ .|. +.+ | .+ .+. .+.+
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~----~ga----~~v--~-~~-~~~~~~~~~~~~~ 247 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEE----TKT----NYY--N-SS-NGYDKLKDSVGKF 247 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHH----HTC----EEE--E-CT-TCSHHHHHHHCCE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHH----hCC----cee--c-hH-HHHHHHHHhCCCC
Confidence 89999999843 555666666 677 99999986 32344433 342 222 2 21 111 1469
Q ss_pred eEEEEccccccccChhhHHHHH-HHHHhcccCCcEEEec
Q 015534 191 DIIISEWMGYFLLFENMLNTVL-YARDKWLVDDGIVLPD 228 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l-~~~~~~LkpgG~lip~ 228 (405)
|+|+... + .. ..+ ....+.|+++|.++..
T Consensus 248 d~vid~~-g----~~----~~~~~~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 248 DVIIDAT-G----AD----VNILGNVIPLLGRNGVLGLF 277 (366)
T ss_dssp EEEEECC-C----CC----THHHHHHGGGEEEEEEEEEC
T ss_pred CEEEECC-C----Ch----HHHHHHHHHHHhcCCEEEEE
Confidence 9999642 1 11 123 5667889999998743
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=84.96 E-value=0.42 Score=45.96 Aligned_cols=40 Identities=23% Similarity=0.344 Sum_probs=31.1
Q ss_pred CCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHH
Q 015534 122 KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQ 162 (405)
Q Consensus 122 ~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~ 162 (405)
++.+|+-+|+|. |..+..+++ .|+ +|+++|.++ -++.+++
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~ 231 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLGA-VVSATDVRPAAKEQVAS 231 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSTTHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH
Confidence 578999999986 555555555 677 999999999 7777665
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=84.91 E-value=3.6 Score=36.60 Aligned_cols=74 Identities=20% Similarity=0.244 Sum_probs=52.3
Q ss_pred CCCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEccccccc-----CCCCcee
Q 015534 120 LFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTKVD 191 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~D 191 (405)
...|+++|--|.+.| ..+..+++.|+ +|+.+|.+.. +.+.+.+...+ .++.++..|+.+.. +..++.|
T Consensus 6 ~L~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~-~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~g~iD 81 (247)
T 4hp8_A 6 SLEGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAP-DETLDIIAKDG--GNASALLIDFADPLAAKDSFTDAGFD 81 (247)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCC-HHHHHHHHHTT--CCEEEEECCTTSTTTTTTSSTTTCCC
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcH-HHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHhCCCC
Confidence 357899999999988 45777788888 8999998751 12233344455 45889999987643 2347899
Q ss_pred EEEEcc
Q 015534 192 IIISEW 197 (405)
Q Consensus 192 ~Iv~~~ 197 (405)
++|.+.
T Consensus 82 iLVNNA 87 (247)
T 4hp8_A 82 ILVNNA 87 (247)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999863
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.86 E-value=0.57 Score=44.02 Aligned_cols=96 Identities=14% Similarity=0.103 Sum_probs=55.6
Q ss_pred HHhccCCCCCCEEEEEcCC--CcHHHHHHHH-cCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEccccccc-----C
Q 015534 114 IYQNKFLFKDKVVLDVGAG--TGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE-----L 185 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG--~G~l~~~la~-~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~ 185 (405)
+.+.....+|.+||-.|++ .|.++..+++ .|..+|++++.+.-.+.++ .|.. .++..+ .++. .
T Consensus 134 l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~~~~~~~~~~-----~ga~---~~~~~~-~~~~~~~~~~ 204 (349)
T 4a27_A 134 LFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEAIK-----DSVT---HLFDRN-ADYVQEVKRI 204 (349)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEECGGGHHHHG-----GGSS---EEEETT-SCHHHHHHHH
T ss_pred HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHH-----cCCc---EEEcCC-ccHHHHHHHh
Confidence 3344567889999999983 3677777877 4567999998433444443 2332 222211 1110 1
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
..+.+|+|+-.. + . . . +....++|+++|+++..
T Consensus 205 ~~~g~Dvv~d~~-g----~-~---~-~~~~~~~l~~~G~~v~~ 237 (349)
T 4a27_A 205 SAEGVDIVLDCL-C----G-D---N-TGKGLSLLKPLGTYILY 237 (349)
T ss_dssp CTTCEEEEEEEC-C----------------CTTEEEEEEEEEE
T ss_pred cCCCceEEEECC-C----c-h---h-HHHHHHHhhcCCEEEEE
Confidence 236799999532 1 1 1 1 24556899999998743
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=84.83 E-value=8.7 Score=29.81 Aligned_cols=66 Identities=17% Similarity=0.315 Sum_probs=39.8
Q ss_pred CCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEE
Q 015534 123 DKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIIS 195 (405)
Q Consensus 123 ~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv~ 195 (405)
+.+|+-+|+|. | .++..+++.|. +|+.+|.++ .++.+++ ..+ +.++.+|..+.. .....+|+|+.
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~---~~~----~~~~~~d~~~~~~l~~~~~~~~d~vi~ 75 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASA---EID----ALVINGDCTKIKTLEDAGIEDADMYIA 75 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH---HCS----SEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHH---hcC----cEEEEcCCCCHHHHHHcCcccCCEEEE
Confidence 46899998865 2 23344445565 899999998 6655432 122 456667664321 11257999987
Q ss_pred c
Q 015534 196 E 196 (405)
Q Consensus 196 ~ 196 (405)
.
T Consensus 76 ~ 76 (140)
T 1lss_A 76 V 76 (140)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=84.75 E-value=6.2 Score=35.57 Aligned_cols=84 Identities=19% Similarity=0.234 Sum_probs=54.7
Q ss_pred CEEEEEcC-CC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 124 KVVLDVGA-GT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 124 ~~VLDiGc-G~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
.+|.-||+ |. | .++..+++.|. +|+++|.++ .++.+.+ .|+ .+ .+..+. ...+|+|+....
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~----~g~----~~--~~~~~~---~~~aDvVi~av~- 76 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSAH-HLAAIEIAPEGRDRLQG----MGI----PL--TDGDGW---IDEADVVVLALP- 76 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSSS-EEEEECCSHHHHHHHHH----TTC----CC--CCSSGG---GGTCSEEEECSC-
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHh----cCC----Cc--CCHHHH---hcCCCEEEEcCC-
Confidence 47999999 86 3 45566667776 899999998 7665543 332 11 122222 146899997432
Q ss_pred ccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
......++..+...++||..++-
T Consensus 77 -----~~~~~~v~~~l~~~l~~~~ivv~ 99 (286)
T 3c24_A 77 -----DNIIEKVAEDIVPRVRPGTIVLI 99 (286)
T ss_dssp -----HHHHHHHHHHHGGGSCTTCEEEE
T ss_pred -----chHHHHHHHHHHHhCCCCCEEEE
Confidence 23456777778788888877663
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=84.70 E-value=6.9 Score=40.69 Aligned_cols=99 Identities=20% Similarity=0.253 Sum_probs=67.7
Q ss_pred CEEEEEcCCCc--HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc-----------C---CCCcEEEEEcccccccCC
Q 015534 124 KVVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-----------G---FSNVITVLKGKIEEIELP 186 (405)
Q Consensus 124 ~~VLDiGcG~G--~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-----------~---~~~~i~~~~~d~~~~~~~ 186 (405)
++|--||+|+- .++..++..|. .|+.+|+++ .++.+++.+... . ...++++ ..+..++
T Consensus 317 ~~v~ViGaG~MG~gIA~~~a~aG~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l--- 391 (742)
T 3zwc_A 317 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKEL--- 391 (742)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEE-ESCGGGG---
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-chhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcc-cCcHHHH---
Confidence 58999999993 56677777877 999999999 988887765432 0 1122322 2333333
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCcee
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASL 232 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (405)
..+|+||=.. ......-..++..+..+++|+.+|.-++.++
T Consensus 392 -~~aDlVIEAV----~E~l~iK~~vf~~le~~~~~~aIlASNTSsl 432 (742)
T 3zwc_A 392 -STVDLVVEAV----FEDMNLKKKVFAELSALCKPGAFLCTNTSAL 432 (742)
T ss_dssp -GSCSEEEECC----CSCHHHHHHHHHHHHHHSCTTCEEEECCSSS
T ss_pred -hhCCEEEEec----cccHHHHHHHHHHHhhcCCCCceEEecCCcC
Confidence 5689988432 3344566789999999999999887665443
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=84.63 E-value=2.3 Score=41.06 Aligned_cols=67 Identities=22% Similarity=0.397 Sum_probs=45.9
Q ss_pred CCEEEEEcCCCcHHHHHHHHc----C--CCeEEEEechH-HHHHHHHHHHHcC--CCCcEEEEEcccccccCCCCcee-E
Q 015534 123 DKVVLDVGAGTGILSLFCAKA----G--AAHVYAVECSQ-MANMAKQIVEANG--FSNVITVLKGKIEEIELPVTKVD-I 192 (405)
Q Consensus 123 ~~~VLDiGcG~G~l~~~la~~----g--~~~V~~vD~s~-~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D-~ 192 (405)
..+|+|+|+|+|.++.-+.+. + ..+++.||+|+ +.+.-++.+.... +..+|.+.. + +| +.+. +
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~~~~~~~v~W~~----~--lP-~~~~g~ 210 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGAQAPGLAARVRWLD----A--LP-ERFEGV 210 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHHHSTTTGGGEEEES----S--CC-SCEEEE
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhccccccCCCceecc----c--CC-ccCceE
Confidence 469999999999987776652 2 24899999999 8888787776421 224577653 1 33 3455 6
Q ss_pred EEEc
Q 015534 193 IISE 196 (405)
Q Consensus 193 Iv~~ 196 (405)
|+++
T Consensus 211 iiAN 214 (432)
T 4f3n_A 211 VVGN 214 (432)
T ss_dssp EEEE
T ss_pred EEee
Confidence 6664
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=84.60 E-value=3.7 Score=37.23 Aligned_cols=61 Identities=16% Similarity=0.073 Sum_probs=42.6
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEe-chH-HHHHHHHHHH-HcCCCCcEEEEEccccccc
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVE-CSQ-MANMAKQIVE-ANGFSNVITVLKGKIEEIE 184 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD-~s~-~~~~a~~~~~-~~~~~~~i~~~~~d~~~~~ 184 (405)
..+++||-.|++.| .++..+++.|+ +|+.++ .++ .++.+.+.+. ..+ .++.++..|+.+..
T Consensus 7 l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dl~~~~ 73 (291)
T 1e7w_A 7 PTVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANALSATLNARRP--NSAITVQADLSNVA 73 (291)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHST--TCEEEEECCCSSSC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHHhhhcC--CeeEEEEeecCCcc
Confidence 35678999898776 34555666777 899999 887 6665555554 333 45889999987654
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=84.52 E-value=2.7 Score=37.69 Aligned_cols=73 Identities=18% Similarity=0.184 Sum_probs=53.3
Q ss_pred CCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------CC
Q 015534 122 KDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------PV 187 (405)
Q Consensus 122 ~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~~ 187 (405)
.+++||-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+...+ .++.++..|+.+... ..
T Consensus 3 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 79 (264)
T 3tfo_A 3 MDKVILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAG--GTALAQVLDVTDRHSVAAFAQAAVDTW 79 (264)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4678999998877 34566667777 899999998 7777666666654 468889999876430 01
Q ss_pred CceeEEEEcc
Q 015534 188 TKVDIIISEW 197 (405)
Q Consensus 188 ~~~D~Iv~~~ 197 (405)
+..|++|.+.
T Consensus 80 g~iD~lVnnA 89 (264)
T 3tfo_A 80 GRIDVLVNNA 89 (264)
T ss_dssp SCCCEEEECC
T ss_pred CCCCEEEECC
Confidence 4799999863
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=84.32 E-value=1.6 Score=40.81 Aligned_cols=90 Identities=18% Similarity=0.106 Sum_probs=52.5
Q ss_pred CCC-CEEEEE-cCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc------CCCCc
Q 015534 121 FKD-KVVLDV-GAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTK 189 (405)
Q Consensus 121 ~~~-~~VLDi-GcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~ 189 (405)
.++ .+||-. |+|. |.++..+++ .|+ +|++++.++ -++.+++. |. + .++..+-.++. .....
T Consensus 162 ~~g~~~vli~gg~g~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~~----Ga-~--~~~~~~~~~~~~~v~~~~~~~g 233 (349)
T 3pi7_A 162 QEGEKAFVMTAGASQLCKLIIGLAKEEGF-RPIVTVRRDEQIALLKDI----GA-A--HVLNEKAPDFEATLREVMKAEQ 233 (349)
T ss_dssp HHCCSEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESCGGGHHHHHHH----TC-S--EEEETTSTTHHHHHHHHHHHHC
T ss_pred hCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CC-C--EEEECCcHHHHHHHHHHhcCCC
Confidence 344 567654 4432 566666666 677 999999998 88887653 32 1 22322212111 01136
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+|+|+-.. + ... +....++|+++|+++..
T Consensus 234 ~D~vid~~-g-----~~~----~~~~~~~l~~~G~iv~~ 262 (349)
T 3pi7_A 234 PRIFLDAV-T-----GPL----ASAIFNAMPKRARWIIY 262 (349)
T ss_dssp CCEEEESS-C-----HHH----HHHHHHHSCTTCEEEEC
T ss_pred CcEEEECC-C-----Chh----HHHHHhhhcCCCEEEEE
Confidence 99998632 1 111 24456889999998753
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=84.24 E-value=3.9 Score=37.42 Aligned_cols=94 Identities=18% Similarity=0.221 Sum_probs=58.3
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 122 ~~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
..++|--||+|. | .++..++ .|. .|+..|.++ .++.+.+.+....+ .++++. .+..+ -...|+|+....
T Consensus 11 ~~~~V~vIG~G~MG~~iA~~la-aG~-~V~v~d~~~~~~~~~~~~l~~~~~-~~i~~~-~~~~~----~~~aDlVieavp 82 (293)
T 1zej_A 11 HHMKVFVIGAGLMGRGIAIAIA-SKH-EVVLQDVSEKALEAAREQIPEELL-SKIEFT-TTLEK----VKDCDIVMEAVF 82 (293)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-TTS-EEEEECSCHHHHHHHHHHSCGGGG-GGEEEE-SSCTT----GGGCSEEEECCC
T ss_pred CCCeEEEEeeCHHHHHHHHHHH-cCC-EEEEEECCHHHHHHHHHHHHHHHh-CCeEEe-CCHHH----HcCCCEEEEcCc
Confidence 457899999997 3 5777788 877 999999999 88887765211101 135533 34432 267899997432
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
........++..+..+ ||.+++-+.
T Consensus 83 ----e~~~vk~~l~~~l~~~--~~~Ilasnt 107 (293)
T 1zej_A 83 ----EDLNTKVEVLREVERL--TNAPLCSNT 107 (293)
T ss_dssp ----SCHHHHHHHHHHHHTT--CCSCEEECC
T ss_pred ----CCHHHHHHHHHHHhcC--CCCEEEEEC
Confidence 1222234555666555 777765443
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=84.24 E-value=8.5 Score=34.83 Aligned_cols=90 Identities=21% Similarity=0.222 Sum_probs=55.1
Q ss_pred CEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEE--------c---ccccccCCCCc
Q 015534 124 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK--------G---KIEEIELPVTK 189 (405)
Q Consensus 124 ~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~--------~---d~~~~~~~~~~ 189 (405)
.+|.-||+|. | .++..+++.|. +|+.+|.++ .++.+++. + +.+.. . +..+....-..
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~----g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQWPAHIEAIRKN----G----LIADFNGEEVVANLPIFSPEEIDHQNEQ 74 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHH----C----EEEEETTEEEEECCCEECGGGCCTTSCC
T ss_pred CeEEEECcCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhC----C----EEEEeCCCeeEecceeecchhhcccCCC
Confidence 4799999986 3 45566666776 999999988 76655432 3 22211 0 11111100127
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+|+|+.... ......++..+...++|+..++..
T Consensus 75 ~d~vi~~v~------~~~~~~v~~~l~~~l~~~~~iv~~ 107 (316)
T 2ew2_A 75 VDLIIALTK------AQQLDAMFKAIQPMITEKTYVLCL 107 (316)
T ss_dssp CSEEEECSC------HHHHHHHHHHHGGGCCTTCEEEEC
T ss_pred CCEEEEEec------cccHHHHHHHHHHhcCCCCEEEEe
Confidence 899987432 235567778888888888777643
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=84.21 E-value=3 Score=37.57 Aligned_cols=74 Identities=14% Similarity=0.177 Sum_probs=52.3
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (405)
..+++||-.|++.| .++..+++.|+ +|++++.++ .++.+.+.+...+ .++.++.+|+.+... .
T Consensus 22 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 98 (279)
T 3sju_A 22 SRPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTSTDEVHAAVAAAVER 98 (279)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35689999998877 35666677777 899999998 7776666666554 458999999876430 0
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
-++.|++|.+.
T Consensus 99 ~g~id~lv~nA 109 (279)
T 3sju_A 99 FGPIGILVNSA 109 (279)
T ss_dssp HCSCCEEEECC
T ss_pred cCCCcEEEECC
Confidence 14789999863
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.15 E-value=4.5 Score=36.14 Aligned_cols=75 Identities=16% Similarity=0.186 Sum_probs=52.4
Q ss_pred CCCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----C-----
Q 015534 120 LFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L----- 185 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~----- 185 (405)
...+++||-.|++.| .++..+++.|+ +|++++.++ .++...+.+...+ .++.++.+|+.+.. +
T Consensus 28 ~l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 104 (272)
T 1yb1_A 28 SVTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKA 104 (272)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCHHHHHHHHHHHHhcC--CeEEEEEeeCCCHHHHHHHHHHHHH
Confidence 356789999998765 34555556776 899999988 6666555555544 45899999987642 0
Q ss_pred CCCceeEEEEcc
Q 015534 186 PVTKVDIIISEW 197 (405)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (405)
..+.+|+||.+.
T Consensus 105 ~~g~iD~li~~A 116 (272)
T 1yb1_A 105 EIGDVSILVNNA 116 (272)
T ss_dssp HTCCCSEEEECC
T ss_pred HCCCCcEEEECC
Confidence 014789999853
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=84.14 E-value=3.6 Score=39.70 Aligned_cols=95 Identities=24% Similarity=0.261 Sum_probs=54.7
Q ss_pred HHHHHHhcc-CCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015534 110 YQNVIYQNK-FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (405)
Q Consensus 110 ~~~~i~~~~-~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (405)
..+++.+.. ....|++|+-+|+|. |......++ .|+ +|+++|.++ ....|. ..|. ++ .++.+..
T Consensus 206 ~~~gi~rat~~~L~GktV~ViG~G~IGk~vA~~Lra~Ga-~Viv~D~dp~ra~~A~----~~G~----~v--~~Leeal- 273 (435)
T 3gvp_A 206 ILDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGS-IVYVTEIDPICALQAC----MDGF----RL--VKLNEVI- 273 (435)
T ss_dssp HHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHH----HTTC----EE--CCHHHHT-
T ss_pred HHHHHHHhhCceecCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEeCChhhhHHHH----HcCC----Ee--ccHHHHH-
Confidence 334444332 346889999999997 544444444 666 899999998 544433 2232 22 2444432
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
...|+|+...-...+.. ....+.+|+|++++
T Consensus 274 --~~ADIVi~atgt~~lI~--------~e~l~~MK~gailI 304 (435)
T 3gvp_A 274 --RQVDIVITCTGNKNVVT--------REHLDRMKNSCIVC 304 (435)
T ss_dssp --TTCSEEEECSSCSCSBC--------HHHHHHSCTTEEEE
T ss_pred --hcCCEEEECCCCcccCC--------HHHHHhcCCCcEEE
Confidence 46899987310011111 12336689998876
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=84.12 E-value=3.5 Score=38.08 Aligned_cols=90 Identities=18% Similarity=0.205 Sum_probs=55.0
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCC---CcEEE-----EEcccccccCCCCce
Q 015534 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS---NVITV-----LKGKIEEIELPVTKV 190 (405)
Q Consensus 122 ~~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~---~~i~~-----~~~d~~~~~~~~~~~ 190 (405)
...+|+-||+|. | .++..+++.|. .|+.+ .++ .++..++. |+. ....+ ...+... ...+
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~~G~-~V~l~-~~~~~~~~i~~~----g~~~~~~~~~~~~~~~~~~~~~~----~~~~ 87 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLARAGH-EVILI-ARPQHVQAIEAT----GLRLETQSFDEQVKVSASSDPSA----VQGA 87 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHHTTC-EEEEE-CCHHHHHHHHHH----CEEEECSSCEEEECCEEESCGGG----GTTC
T ss_pred cCCcEEEECcCHHHHHHHHHHHHCCC-eEEEE-EcHhHHHHHHhC----CeEEEcCCCcEEEeeeeeCCHHH----cCCC
Confidence 446899999997 3 56777777776 89999 777 66655442 310 00011 0112211 1578
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+|+...- ...+..++..+...++|+..++.
T Consensus 88 D~vilavk------~~~~~~~l~~l~~~l~~~~~iv~ 118 (318)
T 3hwr_A 88 DLVLFCVK------STDTQSAALAMKPALAKSALVLS 118 (318)
T ss_dssp SEEEECCC------GGGHHHHHHHHTTTSCTTCEEEE
T ss_pred CEEEEEcc------cccHHHHHHHHHHhcCCCCEEEE
Confidence 99987432 23567788888888988877663
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=83.70 E-value=4 Score=36.32 Aligned_cols=75 Identities=12% Similarity=0.086 Sum_probs=53.4
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHH-cCCCCcEEEEEcccccccC----------
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-NGFSNVITVLKGKIEEIEL---------- 185 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~-~~~~~~i~~~~~d~~~~~~---------- 185 (405)
..+++||-.|++.| .++..+++.|+ +|+.++.++ -++.+.+.+.. .+ ..++.++..|+.+...
T Consensus 6 l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (265)
T 3lf2_A 6 LSEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFP-GARLFASVCDVLDALQVRAFAEACER 83 (265)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHST-TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcC-CceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 46789999999887 44666677777 899999998 76666555554 33 2348899999876431
Q ss_pred CCCceeEEEEcc
Q 015534 186 PVTKVDIIISEW 197 (405)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (405)
.-++.|++|.+.
T Consensus 84 ~~g~id~lvnnA 95 (265)
T 3lf2_A 84 TLGCASILVNNA 95 (265)
T ss_dssp HHCSCSEEEECC
T ss_pred HcCCCCEEEECC
Confidence 014789999863
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.67 E-value=2.8 Score=36.84 Aligned_cols=73 Identities=16% Similarity=0.221 Sum_probs=51.5
Q ss_pred CCCCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc------CCCC
Q 015534 119 FLFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVT 188 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~ 188 (405)
...++++||-.|++.| .++..+++.|+ +|+.++.++ .++...+.+. .++.++..|+.+.. ...+
T Consensus 10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~ 83 (249)
T 3f9i_A 10 IDLTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNEEKLKSLGNALK-----DNYTIEVCNLANKEECSNLISKTS 83 (249)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC-----SSEEEEECCTTSHHHHHHHHHTCS
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhc-----cCccEEEcCCCCHHHHHHHHHhcC
Confidence 3467889999998877 34566666776 899999988 6665544332 45888998887642 1125
Q ss_pred ceeEEEEcc
Q 015534 189 KVDIIISEW 197 (405)
Q Consensus 189 ~~D~Iv~~~ 197 (405)
..|++|.+.
T Consensus 84 ~id~li~~A 92 (249)
T 3f9i_A 84 NLDILVCNA 92 (249)
T ss_dssp CCSEEEECC
T ss_pred CCCEEEECC
Confidence 799999863
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=83.60 E-value=3.4 Score=36.47 Aligned_cols=76 Identities=17% Similarity=0.150 Sum_probs=53.7
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCC-CcEEEEEcccccccC----------
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIEL---------- 185 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~---------- 185 (405)
..++++|-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+....-. .++.++.+|+.+...
T Consensus 5 ~~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (250)
T 3nyw_A 5 KQKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ 83 (250)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence 45789999999887 45666777787 899999998 766665555544211 458889999876431
Q ss_pred CCCceeEEEEcc
Q 015534 186 PVTKVDIIISEW 197 (405)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (405)
..++.|++|.+.
T Consensus 84 ~~g~iD~lvnnA 95 (250)
T 3nyw_A 84 KYGAVDILVNAA 95 (250)
T ss_dssp HHCCEEEEEECC
T ss_pred hcCCCCEEEECC
Confidence 014799999864
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=83.47 E-value=4.7 Score=39.26 Aligned_cols=100 Identities=14% Similarity=0.072 Sum_probs=57.5
Q ss_pred CEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHH------------HHHcCCCCcEEEEEcccccccCCCC
Q 015534 124 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQI------------VEANGFSNVITVLKGKIEEIELPVT 188 (405)
Q Consensus 124 ~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~------------~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (405)
.+|.-||+|. | .++..+++.|. +|+++|.++ .++..++. +..+--..++++. .|..+.. .
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~-~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t-~d~~ea~---~ 77 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGA-NVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFG-TEIEQAV---P 77 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEE-SCHHHHG---G
T ss_pred CEEEEECcCHHHHHHHHHHHhcCC-EEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEE-CCHHHHH---h
Confidence 4788899986 3 44566667776 999999999 77765541 0000001234432 3333321 4
Q ss_pred ceeEEEEcccccc----ccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 189 KVDIIISEWMGYF----LLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 189 ~~D~Iv~~~~~~~----l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
..|+|+....... -.....+..++..+...|++|..++..
T Consensus 78 ~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~ 121 (450)
T 3gg2_A 78 EADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTK 121 (450)
T ss_dssp GCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred cCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEe
Confidence 6899886421110 001125667777888888888776643
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=83.29 E-value=3.3 Score=36.82 Aligned_cols=75 Identities=20% Similarity=0.291 Sum_probs=54.0
Q ss_pred CCCCEEEEEcC-CCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-----C----
Q 015534 121 FKDKVVLDVGA-GTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P---- 186 (405)
Q Consensus 121 ~~~~~VLDiGc-G~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~---- 186 (405)
..+++||-.|+ |.| .++..+++.|+ +|+.++.++ -++.+.+.+...+- .++.++.+|+.+... .
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~ 97 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLGL-GRVEAVVCDVTSTEAVDALITQTVE 97 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCS-SCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCC-CceEEEEeCCCCHHHHHHHHHHHHH
Confidence 45789999998 666 45667777877 899999998 77666666654432 469999999976431 0
Q ss_pred -CCceeEEEEcc
Q 015534 187 -VTKVDIIISEW 197 (405)
Q Consensus 187 -~~~~D~Iv~~~ 197 (405)
.++.|++|.+.
T Consensus 98 ~~g~id~li~~A 109 (266)
T 3o38_A 98 KAGRLDVLVNNA 109 (266)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCcEEEECC
Confidence 14789999863
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=83.22 E-value=4.3 Score=35.69 Aligned_cols=74 Identities=20% Similarity=0.289 Sum_probs=51.0
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CC-----
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LP----- 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~----- 186 (405)
..+++||-.|++.| .++..+++.|+ +|++++.++ .++...+.+...+ .++.++.+|+.+.. +.
T Consensus 11 l~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 87 (260)
T 3awd_A 11 LDNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDEAMATKAVEDLRMEG--HDVSSVVMDVTNTESVQNAVRSVHEQ 87 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHH
Confidence 35789999998765 34555566776 899999988 6665555555444 45899999987643 10
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
.+.+|+||.+.
T Consensus 88 ~~~id~vi~~A 98 (260)
T 3awd_A 88 EGRVDILVACA 98 (260)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEECC
Confidence 13689999853
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=83.17 E-value=3.2 Score=38.43 Aligned_cols=87 Identities=14% Similarity=0.163 Sum_probs=48.9
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEech---H-HHH-HHHHHHHHcCCCCcEEEEEc
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECS---Q-MAN-MAKQIVEANGFSNVITVLKG 178 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s---~-~~~-~a~~~~~~~~~~~~i~~~~~ 178 (405)
...+...|........+++||-+|+| | ..+..+++.|+++|+.++.+ . -++ .+.+.....+ ..+.++..
T Consensus 138 ~~Gf~~~L~~~~~~l~gk~~lVlGaG-G~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~--~~~~~~~~ 214 (315)
T 3tnl_A 138 GTGYMRALKEAGHDIIGKKMTICGAG-GAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTD--CKAQLFDI 214 (315)
T ss_dssp HHHHHHHHHHTTCCCTTSEEEEECCS-HHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSS--CEEEEEET
T ss_pred HHHHHHHHHHcCCCccCCEEEEECCC-hHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcC--CceEEecc
Confidence 33556666554444578999999997 4 33455666888899999988 5 333 3333322222 12444322
Q ss_pred c-cccccCCCCceeEEEEc
Q 015534 179 K-IEEIELPVTKVDIIISE 196 (405)
Q Consensus 179 d-~~~~~~~~~~~D~Iv~~ 196 (405)
+ ..++......+|+||+.
T Consensus 215 ~~~~~l~~~l~~aDiIINa 233 (315)
T 3tnl_A 215 EDHEQLRKEIAESVIFTNA 233 (315)
T ss_dssp TCHHHHHHHHHTCSEEEEC
T ss_pred chHHHHHhhhcCCCEEEEC
Confidence 1 11121001469999974
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=83.16 E-value=4.4 Score=37.52 Aligned_cols=61 Identities=16% Similarity=0.073 Sum_probs=42.4
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEe-chH-HHHHHHHHHH-HcCCCCcEEEEEccccccc
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVE-CSQ-MANMAKQIVE-ANGFSNVITVLKGKIEEIE 184 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD-~s~-~~~~a~~~~~-~~~~~~~i~~~~~d~~~~~ 184 (405)
..+++||-.|++.| .++..|++.|+ +|+.++ .++ .++.+.+.+. ..+ .++.++.+|+.+..
T Consensus 44 l~~k~~lVTGas~GIG~aia~~La~~G~-~Vv~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dl~d~~ 110 (328)
T 2qhx_A 44 PTVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANALSATLNARRP--NSAITVQADLSNVA 110 (328)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHST--TCEEEEECCCSSSC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhhcC--CeEEEEEeeCCCch
Confidence 35678999888776 34555666777 899999 887 6665555444 333 45889999987654
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=83.02 E-value=3 Score=37.54 Aligned_cols=74 Identities=20% Similarity=0.264 Sum_probs=54.2
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-----C-----
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P----- 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~----- 186 (405)
..+++||-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+...+ .++.++.+|+.+... .
T Consensus 30 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~ 106 (276)
T 3r1i_A 30 LSGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVG--GKALPIRCDVTQPDQVRGMLDQMTGE 106 (276)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 56789999999887 35666677777 899999988 7766666666554 458889999876431 0
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
-++.|++|.+.
T Consensus 107 ~g~iD~lvnnA 117 (276)
T 3r1i_A 107 LGGIDIAVCNA 117 (276)
T ss_dssp HSCCSEEEECC
T ss_pred cCCCCEEEECC
Confidence 14799999863
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=82.97 E-value=3.4 Score=37.35 Aligned_cols=71 Identities=20% Similarity=0.309 Sum_probs=50.3
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----C-CCCce
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L-PVTKV 190 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-~~~~~ 190 (405)
..+++||-.|++.| .++..+++.|+ +|++++.++ -++.+.+. +..++.++..|+.+.. . .-+..
T Consensus 14 l~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~Dl~d~~~v~~~~~~~~~i 87 (291)
T 3rd5_A 14 FAQRTVVITGANSGLGAVTARELARRGA-TVIMAVRDTRKGEAAART-----MAGQVEVRELDLQDLSSVRRFADGVSGA 87 (291)
T ss_dssp CTTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTT-----SSSEEEEEECCTTCHHHHHHHHHTCCCE
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHH-----hcCCeeEEEcCCCCHHHHHHHHHhcCCC
Confidence 56789999998876 34556666776 899999988 65544332 2357999999987653 0 11478
Q ss_pred eEEEEcc
Q 015534 191 DIIISEW 197 (405)
Q Consensus 191 D~Iv~~~ 197 (405)
|++|.+.
T Consensus 88 D~lv~nA 94 (291)
T 3rd5_A 88 DVLINNA 94 (291)
T ss_dssp EEEEECC
T ss_pred CEEEECC
Confidence 9999863
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=82.91 E-value=6.2 Score=38.73 Aligned_cols=85 Identities=22% Similarity=0.269 Sum_probs=50.0
Q ss_pred CCCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015534 120 LFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (405)
...|++|+-+|+| | ..+..++..|+ +|+.+|.++ ....+.. .+ +. ..+..+. ...+|+|+.
T Consensus 262 ~L~GKtVvVtGaG-gIG~aiA~~Laa~GA-~Viv~D~~~~~a~~Aa~----~g----~d--v~~lee~---~~~aDvVi~ 326 (488)
T 3ond_A 262 MIAGKVAVVAGYG-DVGKGCAAALKQAGA-RVIVTEIDPICALQATM----EG----LQ--VLTLEDV---VSEADIFVT 326 (488)
T ss_dssp CCTTCEEEEECCS-HHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TT----CE--ECCGGGT---TTTCSEEEE
T ss_pred cccCCEEEEECCC-HHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH----hC----Cc--cCCHHHH---HHhcCEEEe
Confidence 3678999999998 4 33444555777 999999998 5554432 22 12 2233333 256898886
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
..-...+. -....+.+++|++++-
T Consensus 327 atG~~~vl--------~~e~l~~mk~gaiVvN 350 (488)
T 3ond_A 327 TTGNKDII--------MLDHMKKMKNNAIVCN 350 (488)
T ss_dssp CSSCSCSB--------CHHHHTTSCTTEEEEE
T ss_pred CCCChhhh--------hHHHHHhcCCCeEEEE
Confidence 32101111 1123467899887763
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=82.89 E-value=5.6 Score=35.89 Aligned_cols=80 Identities=16% Similarity=0.138 Sum_probs=47.2
Q ss_pred HHHHH-HHhccCCCCCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc
Q 015534 109 SYQNV-IYQNKFLFKDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (405)
Q Consensus 109 ~~~~~-i~~~~~~~~~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (405)
.+... +........++++|-+|+|. | ..+..+++.|+.+|+.++.++ -.+...+.+.. ..+... ...++.
T Consensus 105 G~~~~lL~~~~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~----~~~~~~--~~~~l~ 178 (272)
T 3pwz_A 105 GLLRDIEENLGEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDH----SRLRIS--RYEALE 178 (272)
T ss_dssp HHHHHHHTTSCCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCC----TTEEEE--CSGGGT
T ss_pred HHHHHHHHHcCCCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcc----CCeeEe--eHHHhc
Confidence 45555 43323345788999999972 1 234455567888999999887 44433333321 124443 333432
Q ss_pred CCCCceeEEEEc
Q 015534 185 LPVTKVDIIISE 196 (405)
Q Consensus 185 ~~~~~~D~Iv~~ 196 (405)
. ..+|+||+.
T Consensus 179 ~--~~~DivIna 188 (272)
T 3pwz_A 179 G--QSFDIVVNA 188 (272)
T ss_dssp T--CCCSEEEEC
T ss_pred c--cCCCEEEEC
Confidence 1 679999984
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=82.87 E-value=4.5 Score=36.78 Aligned_cols=75 Identities=21% Similarity=0.320 Sum_probs=52.7
Q ss_pred CCCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEech------------H-HHHHHHHHHHHcCCCCcEEEEEcccccc
Q 015534 120 LFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECS------------Q-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s------------~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (405)
...+++||-.|++.| .++..+++.|+ +|+++|.+ + .++.+.+.+...+ .++.++..|+.+.
T Consensus 25 ~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~ 101 (299)
T 3t7c_A 25 KVEGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG--RRIIASQVDVRDF 101 (299)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCH
T ss_pred ccCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecccccccccccccCHHHHHHHHHHHHhcC--CceEEEECCCCCH
Confidence 356789999999887 35666777777 89999976 5 4554444455544 4689999999764
Q ss_pred cC----------CCCceeEEEEcc
Q 015534 184 EL----------PVTKVDIIISEW 197 (405)
Q Consensus 184 ~~----------~~~~~D~Iv~~~ 197 (405)
.. .-+..|++|.+.
T Consensus 102 ~~v~~~~~~~~~~~g~iD~lv~nA 125 (299)
T 3t7c_A 102 DAMQAAVDDGVTQLGRLDIVLANA 125 (299)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCEEEECC
Confidence 31 014799999863
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=82.86 E-value=3 Score=41.06 Aligned_cols=102 Identities=12% Similarity=0.119 Sum_probs=60.1
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHH---cCC---------CCcEEEEEcccccccCC
Q 015534 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA---NGF---------SNVITVLKGKIEEIELP 186 (405)
Q Consensus 122 ~~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~---~~~---------~~~i~~~~~d~~~~~~~ 186 (405)
...+|.-||+|. | .++..+++.|. +|+++|.++ .++.+++.... .++ ..++++. .|..+.
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la~~G~-~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~t-td~~~a--- 81 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLADIGH-DVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFS-TDIEAA--- 81 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEE-CCHHHH---
T ss_pred CCceEEEECcCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEE-CCHHHH---
Confidence 446899999996 4 45677777877 899999998 77766542100 000 0123332 222211
Q ss_pred CCceeEEEEccccc----cccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 187 VTKVDIIISEWMGY----FLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~----~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
-...|+|+...... .-.....+..++..+...|+||..++..
T Consensus 82 ~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~ 127 (478)
T 2y0c_A 82 VAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDK 127 (478)
T ss_dssp HHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred hhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 14689888642110 0001145667778888889998777654
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=82.63 E-value=0.94 Score=40.68 Aligned_cols=55 Identities=11% Similarity=-0.063 Sum_probs=38.0
Q ss_pred EEEEEccccccc--CCCCceeEEEEcccccccc-C-----------hhhHHHHHHHHHhcccCCcEEEec
Q 015534 173 ITVLKGKIEEIE--LPVTKVDIIISEWMGYFLL-F-----------ENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 173 i~~~~~d~~~~~--~~~~~~D~Iv~~~~~~~l~-~-----------~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.+++++|..+.. ++.++||+|++++. |... . ...+...+..+.++|+|||.++..
T Consensus 5 ~~l~~gD~~~~l~~l~~~~vdlI~~DPP-Y~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~ 73 (260)
T 1g60_A 5 NKIHQMNCFDFLDQVENKSVQLAVIDPP-YNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF 73 (260)
T ss_dssp SSEEECCHHHHHHHSCTTCEEEEEECCC-CSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CeEEechHHHHHHhccccccCEEEECCC-CCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 457888875532 45579999999874 3322 0 024566778888999999998753
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=82.60 E-value=2.5 Score=37.54 Aligned_cols=74 Identities=24% Similarity=0.293 Sum_probs=53.3
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (405)
..+++||-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+...+ .++.++.+|+.+... .
T Consensus 4 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (257)
T 3imf_A 4 MKEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFP--GQILTVQMDVRNTDDIQKMIEQIDEK 80 (257)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCST--TCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 35789999998876 34666667777 899999998 7776666554433 568999999976430 0
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
.++.|++|.+.
T Consensus 81 ~g~id~lv~nA 91 (257)
T 3imf_A 81 FGRIDILINNA 91 (257)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEECC
Confidence 14789999863
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=82.55 E-value=4.4 Score=36.27 Aligned_cols=74 Identities=24% Similarity=0.368 Sum_probs=51.9
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEech------------H-HHHHHHHHHHHcCCCCcEEEEEccccccc
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECS------------Q-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s------------~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (405)
..+++||-.|++.| .++..+++.|+ +|+++|.+ + .++...+.+...+ .++.++.+|+.+..
T Consensus 11 l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~ 87 (278)
T 3sx2_A 11 LTGKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG--SRIVARQADVRDRE 87 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT--CCEEEEECCTTCHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEecccccccccccccchHHHHHHHHHHHhcC--CeEEEEeCCCCCHH
Confidence 46789999998877 45666777777 89999976 5 5554444444444 46999999997643
Q ss_pred -----CC-----CCceeEEEEcc
Q 015534 185 -----LP-----VTKVDIIISEW 197 (405)
Q Consensus 185 -----~~-----~~~~D~Iv~~~ 197 (405)
+. -++.|++|.+.
T Consensus 88 ~v~~~~~~~~~~~g~id~lv~nA 110 (278)
T 3sx2_A 88 SLSAALQAGLDELGRLDIVVANA 110 (278)
T ss_dssp HHHHHHHHHHHHHCCCCEEEECC
T ss_pred HHHHHHHHHHHHcCCCCEEEECC
Confidence 00 14799999864
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=82.50 E-value=4.9 Score=35.32 Aligned_cols=74 Identities=22% Similarity=0.235 Sum_probs=51.9
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-----C-----
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P----- 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~----- 186 (405)
..++++|-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+...+ .++.++.+|+.+... .
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~ 81 (247)
T 2jah_A 5 LQGKVALITGASSGIGEATARALAAEGA-AVAIAARRVEKLRALGDELTAAG--AKVHVLELDVADRQGVDAAVASTVEA 81 (247)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35789999998876 34556666777 899999988 6666555555444 458899999876421 0
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
-+.+|++|.+.
T Consensus 82 ~g~id~lv~nA 92 (247)
T 2jah_A 82 LGGLDILVNNA 92 (247)
T ss_dssp HSCCSEEEECC
T ss_pred cCCCCEEEECC
Confidence 14789999853
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=82.45 E-value=4.8 Score=36.14 Aligned_cols=76 Identities=24% Similarity=0.176 Sum_probs=54.4
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCC-CcEEEEEcccccccC----------
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIEL---------- 185 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~---------- 185 (405)
..+++||-.|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+...+.. .++.++.+|+.+...
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 87 (281)
T 3svt_A 9 FQDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTA 87 (281)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 46789999998877 35666677777 899999998 776666666554421 268999999876430
Q ss_pred CCCceeEEEEcc
Q 015534 186 PVTKVDIIISEW 197 (405)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (405)
..++.|++|.+.
T Consensus 88 ~~g~id~lv~nA 99 (281)
T 3svt_A 88 WHGRLHGVVHCA 99 (281)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 014789999864
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.33 E-value=4.8 Score=35.80 Aligned_cols=76 Identities=21% Similarity=0.264 Sum_probs=51.6
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-----C-----
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P----- 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~----- 186 (405)
..+++||-.|++.| .++..+++.|+ +|++++.++ .++.+.+.+.......++.++.+|+.+... .
T Consensus 11 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 89 (267)
T 1iy8_A 11 FTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 89 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45789999998876 44556666777 899999988 666555444443112458899999876430 0
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
-+.+|++|.+.
T Consensus 90 ~g~id~lv~nA 100 (267)
T 1iy8_A 90 FGRIDGFFNNA 100 (267)
T ss_dssp HSCCSEEEECC
T ss_pred cCCCCEEEECC
Confidence 14689999863
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=82.31 E-value=3.6 Score=36.73 Aligned_cols=76 Identities=20% Similarity=0.249 Sum_probs=53.0
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----C-CCCce
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L-PVTKV 190 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-~~~~~ 190 (405)
..+++||-.|++.| .++..+++.|+ +|+.++.++ -++.+.+.+...+....+.++..|+.+.. . .-++.
T Consensus 8 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~i 86 (267)
T 3t4x_A 8 LKGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKV 86 (267)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCC
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCC
Confidence 46789999998776 34566667777 899999998 66665555555443356888888886642 0 12578
Q ss_pred eEEEEcc
Q 015534 191 DIIISEW 197 (405)
Q Consensus 191 D~Iv~~~ 197 (405)
|++|.+.
T Consensus 87 d~lv~nA 93 (267)
T 3t4x_A 87 DILINNL 93 (267)
T ss_dssp SEEEECC
T ss_pred CEEEECC
Confidence 9999863
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=82.21 E-value=5.3 Score=41.52 Aligned_cols=96 Identities=18% Similarity=0.186 Sum_probs=60.7
Q ss_pred CEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc-------C---------CCCcEEEEEccccccc
Q 015534 124 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------G---------FSNVITVLKGKIEEIE 184 (405)
Q Consensus 124 ~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-------~---------~~~~i~~~~~d~~~~~ 184 (405)
.+|--||+|. | .++..+++.|. .|+.+|.++ .++.+++.+..+ | ...++++. .|...+
T Consensus 313 ~kV~VIGaG~MG~~iA~~la~aG~-~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~d~~~~- 389 (725)
T 2wtb_A 313 KKVAIIGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGS-LDYESF- 389 (725)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTC-CEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEE-SSSGGG-
T ss_pred cEEEEEcCCHhhHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEe-CCHHHH-
Confidence 4699999997 2 56667777777 899999999 887765543221 1 11234433 343222
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
...|+||.... ........++..+...++|+.+++-++
T Consensus 390 ---~~aDlVIeaVp----e~~~vk~~v~~~l~~~~~~~~Ilasnt 427 (725)
T 2wtb_A 390 ---RDVDMVIEAVI----ENISLKQQIFADLEKYCPQHCILASNT 427 (725)
T ss_dssp ---TTCSEEEECCC----SCHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred ---CCCCEEEEcCc----CCHHHHHHHHHHHHhhCCCCcEEEeCC
Confidence 56899996432 122234567778888899988775443
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=82.16 E-value=2.4 Score=39.87 Aligned_cols=44 Identities=25% Similarity=0.357 Sum_probs=35.1
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-c-CCCeEEEEechH-HHHHHHH
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-A-GAAHVYAVECSQ-MANMAKQ 162 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~-g~~~V~~vD~s~-~~~~a~~ 162 (405)
....++.+||-+|+|. |.++..+|+ . |+ +|+++|.++ -++.+++
T Consensus 182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga-~Vi~~~~~~~~~~~~~~ 229 (359)
T 1h2b_A 182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMTPA-TVIALDVKEEKLKLAER 229 (359)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHCCC-EEEEEESSHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHH
Confidence 4567899999999864 566777777 6 77 899999998 8877764
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=82.11 E-value=4.6 Score=36.34 Aligned_cols=74 Identities=20% Similarity=0.319 Sum_probs=51.8
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEech----------------H-HHHHHHHHHHHcCCCCcEEEEEccc
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECS----------------Q-MANMAKQIVEANGFSNVITVLKGKI 180 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s----------------~-~~~~a~~~~~~~~~~~~i~~~~~d~ 180 (405)
..+++||-.|++.| .++..+++.|+ +|+++|.+ + .++.+.+.+...+ .++.++..|+
T Consensus 9 l~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv 85 (286)
T 3uve_A 9 VEGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN--RRIVTAEVDV 85 (286)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT--CCEEEEECCT
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeccccccccccccccccCCHHHHHHHHHHHhhcC--CceEEEEcCC
Confidence 46789999999887 45666777777 89999876 4 4444444444443 5689999998
Q ss_pred ccccC----------CCCceeEEEEcc
Q 015534 181 EEIEL----------PVTKVDIIISEW 197 (405)
Q Consensus 181 ~~~~~----------~~~~~D~Iv~~~ 197 (405)
.+... .-++.|++|.+.
T Consensus 86 ~~~~~v~~~~~~~~~~~g~id~lv~nA 112 (286)
T 3uve_A 86 RDYDALKAAVDSGVEQLGRLDIIVANA 112 (286)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 76430 014799999863
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=81.88 E-value=5.2 Score=35.58 Aligned_cols=88 Identities=14% Similarity=0.140 Sum_probs=55.0
Q ss_pred CCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 123 DKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 123 ~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
+.+|.-||||. | .++..+++.|...|+.+|.++ .++.+.+. .+ +.+ ..+..+.. ...|+|+....
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~---~g----~~~-~~~~~~~~---~~~Dvvi~av~- 77 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQK---VE----AEY-TTDLAEVN---PYAKLYIVSLK- 77 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHH---TT----CEE-ESCGGGSC---SCCSEEEECCC-
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHH---cC----Cce-eCCHHHHh---cCCCEEEEecC-
Confidence 35799999985 3 445556667774599999998 66554432 23 222 23443331 46899997432
Q ss_pred ccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
......++..+...+++|..++-
T Consensus 78 -----~~~~~~v~~~l~~~~~~~~ivv~ 100 (266)
T 3d1l_A 78 -----DSAFAELLQGIVEGKREEALMVH 100 (266)
T ss_dssp -----HHHHHHHHHHHHTTCCTTCEEEE
T ss_pred -----HHHHHHHHHHHHhhcCCCcEEEE
Confidence 23346667777777888877664
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=81.76 E-value=4.8 Score=36.08 Aligned_cols=75 Identities=17% Similarity=0.252 Sum_probs=53.2
Q ss_pred CCCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEec-------------hH-HHHHHHHHHHHcCCCCcEEEEEccccc
Q 015534 120 LFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVEC-------------SQ-MANMAKQIVEANGFSNVITVLKGKIEE 182 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~-------------s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~ 182 (405)
...+++||-.|++.| .++..+++.|+ +|+++|. ++ .++.+.+.+...+ .++.++..|+.+
T Consensus 12 ~l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~ 88 (280)
T 3pgx_A 12 SLQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQG--RKALTRVLDVRD 88 (280)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT--CCEEEEECCTTC
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEEcCCCC
Confidence 356889999999887 35666777777 8999987 55 5655555555544 468899999876
Q ss_pred ccC----------CCCceeEEEEcc
Q 015534 183 IEL----------PVTKVDIIISEW 197 (405)
Q Consensus 183 ~~~----------~~~~~D~Iv~~~ 197 (405)
... .-++.|++|.+.
T Consensus 89 ~~~v~~~~~~~~~~~g~id~lvnnA 113 (280)
T 3pgx_A 89 DAALRELVADGMEQFGRLDVVVANA 113 (280)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECC
Confidence 430 014799999863
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=81.74 E-value=5.2 Score=35.39 Aligned_cols=74 Identities=18% Similarity=0.177 Sum_probs=51.7
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CC-----
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LP----- 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~----- 186 (405)
..+++||-.|++.| .++..+++.|+ +|++++.++ .++.+.+.+...+ .++.++.+|+.+.. +.
T Consensus 7 l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (260)
T 2ae2_A 7 LEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANH 83 (260)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 35789999998776 34555666777 899999988 6665555555443 46889999987642 10
Q ss_pred C-CceeEEEEcc
Q 015534 187 V-TKVDIIISEW 197 (405)
Q Consensus 187 ~-~~~D~Iv~~~ 197 (405)
- +.+|++|.+.
T Consensus 84 ~~g~id~lv~~A 95 (260)
T 2ae2_A 84 FHGKLNILVNNA 95 (260)
T ss_dssp TTTCCCEEEECC
T ss_pred cCCCCCEEEECC
Confidence 1 5799999863
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=81.68 E-value=5.7 Score=38.44 Aligned_cols=96 Identities=22% Similarity=0.278 Sum_probs=61.9
Q ss_pred CCCCCCEEEEEcCCCc--HHHHHHHHcCCCeEEEEechHHH--HHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015534 119 FLFKDKVVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQMA--NMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G--~l~~~la~~g~~~V~~vD~s~~~--~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 194 (405)
...++++|.-||+|+= ..++-|...|..-++|+-..... ....+++...|+ + ..++.+.. ...|+|+
T Consensus 33 ~~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf----~--v~~~~eA~---~~ADvV~ 103 (491)
T 3ulk_A 33 SYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGF----K--VGTYEELI---PQADLVI 103 (491)
T ss_dssp GGGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTC----E--EEEHHHHG---GGCSEEE
T ss_pred HHHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCC----E--ecCHHHHH---HhCCEEE
Confidence 4567899999999994 44566666888677777533210 122334556665 2 23444442 6789998
Q ss_pred EccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
. |........+...+...||||..+.++.
T Consensus 104 ~------L~PD~~q~~vy~~I~p~lk~G~~L~faH 132 (491)
T 3ulk_A 104 N------LTPDKQHSDVVRTVQPLMKDGAALGYSH 132 (491)
T ss_dssp E------CSCGGGHHHHHHHHGGGSCTTCEEEESS
T ss_pred E------eCChhhHHHHHHHHHhhCCCCCEEEecC
Confidence 6 3333455667788999999999888654
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=81.64 E-value=5.1 Score=35.90 Aligned_cols=74 Identities=15% Similarity=0.188 Sum_probs=51.7
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----C-----C
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----P 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~ 186 (405)
..+++||-.|++.| .++..+++.|+ +|++++.++ -++.+.+.+...+ .++.++.+|+.+.. + .
T Consensus 20 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 96 (277)
T 2rhc_B 20 QDSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVER 96 (277)
T ss_dssp TTSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence 35679999998776 34555666776 899999988 6665555555544 45888999987642 0 0
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
-+.+|++|.+.
T Consensus 97 ~g~iD~lv~~A 107 (277)
T 2rhc_B 97 YGPVDVLVNNA 107 (277)
T ss_dssp TCSCSEEEECC
T ss_pred hCCCCEEEECC
Confidence 24789999863
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.57 E-value=4.9 Score=35.64 Aligned_cols=74 Identities=22% Similarity=0.276 Sum_probs=52.0
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (405)
..+++||-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+...+ .++.++.+|+.+... .
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (262)
T 1zem_A 5 FNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRD 81 (262)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 35789999998877 34556666777 899999988 6665555555443 458899999876420 0
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
-+.+|++|.+.
T Consensus 82 ~g~id~lv~nA 92 (262)
T 1zem_A 82 FGKIDFLFNNA 92 (262)
T ss_dssp HSCCCEEEECC
T ss_pred hCCCCEEEECC
Confidence 14789999863
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=81.46 E-value=2.7 Score=37.78 Aligned_cols=74 Identities=24% Similarity=0.333 Sum_probs=53.9
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC---------CC
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---------PV 187 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------~~ 187 (405)
..+++||-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+...+ .++.++.+|+.+... ..
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~ 107 (275)
T 4imr_A 31 LRGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASG--GTAQELAGDLSEAGAGTDLIERAEAI 107 (275)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTT--CCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEecCCCHHHHHHHHHHHHHh
Confidence 46789999998876 34666667777 899999988 6666666565554 458999999976531 01
Q ss_pred CceeEEEEcc
Q 015534 188 TKVDIIISEW 197 (405)
Q Consensus 188 ~~~D~Iv~~~ 197 (405)
+..|++|.+.
T Consensus 108 g~iD~lvnnA 117 (275)
T 4imr_A 108 APVDILVINA 117 (275)
T ss_dssp SCCCEEEECC
T ss_pred CCCCEEEECC
Confidence 4789999864
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.30 E-value=5.5 Score=35.58 Aligned_cols=74 Identities=18% Similarity=0.208 Sum_probs=52.2
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CC-----
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LP----- 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~----- 186 (405)
..+++||-.|++.| .++..+++.|+ +|++++.++ .++.+.+.+...+ .++.++.+|+.+.. +.
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 95 (273)
T 1ae1_A 19 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHV 95 (273)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence 45789999998776 34556666777 899999988 6665555555444 35889999987642 00
Q ss_pred C-CceeEEEEcc
Q 015534 187 V-TKVDIIISEW 197 (405)
Q Consensus 187 ~-~~~D~Iv~~~ 197 (405)
- +.+|++|.+.
T Consensus 96 ~~g~id~lv~nA 107 (273)
T 1ae1_A 96 FDGKLNILVNNA 107 (273)
T ss_dssp TTSCCCEEEECC
T ss_pred cCCCCcEEEECC
Confidence 1 6799999864
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=80.97 E-value=11 Score=33.17 Aligned_cols=73 Identities=15% Similarity=0.133 Sum_probs=46.2
Q ss_pred CCCCEEEEEcCC--Cc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----------
Q 015534 121 FKDKVVLDVGAG--TG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---------- 184 (405)
Q Consensus 121 ~~~~~VLDiGcG--~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---------- 184 (405)
..+++||-.|++ .| .++..+++.|+ +|+.++.++ ..+.+.+.....+ . ..++.+|+.+..
T Consensus 7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~--~-~~~~~~D~~~~~~v~~~~~~~~ 82 (265)
T 1qsg_A 7 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLG--S-DIVLQCDVAEDASIDTMFAELG 82 (265)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTT--C-CCEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHHhcC--C-cEEEEccCCCHHHHHHHHHHHH
Confidence 356789999986 34 34555566776 899998876 4444444333322 2 367888887642
Q ss_pred CCCCceeEEEEcc
Q 015534 185 LPVTKVDIIISEW 197 (405)
Q Consensus 185 ~~~~~~D~Iv~~~ 197 (405)
-.-+.+|++|.+.
T Consensus 83 ~~~g~iD~lv~~A 95 (265)
T 1qsg_A 83 KVWPKFDGFVHSI 95 (265)
T ss_dssp TTCSSEEEEEECC
T ss_pred HHcCCCCEEEECC
Confidence 1124799999864
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=80.86 E-value=11 Score=34.17 Aligned_cols=88 Identities=18% Similarity=0.239 Sum_probs=51.5
Q ss_pred CCCCCCEEEEEcCCC-cHH-HHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEE-cccccccCCCCceeEEE
Q 015534 119 FLFKDKVVLDVGAGT-GIL-SLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK-GKIEEIELPVTKVDIII 194 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~-G~l-~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~D~Iv 194 (405)
....+++|+-||+|. |.. +..+...|. +|+++|.++ -.+.+.+ .+ ++.+. .++.++ + ..+|+|+
T Consensus 153 ~~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~~~~~~~~~~----~g----~~~~~~~~l~~~-l--~~aDvVi 220 (300)
T 2rir_A 153 YTIHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARSSAHLARITE----MG----LVPFHTDELKEH-V--KDIDICI 220 (300)
T ss_dssp SCSTTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TT----CEEEEGGGHHHH-S--TTCSEEE
T ss_pred CCCCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----CC----CeEEchhhHHHH-h--hCCCEEE
Confidence 346789999999976 332 233333676 999999988 5544332 23 23322 233332 2 5799999
Q ss_pred EccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
...... +... .....+|||++++-
T Consensus 221 ~~~p~~-~i~~--------~~~~~mk~g~~lin 244 (300)
T 2rir_A 221 NTIPSM-ILNQ--------TVLSSMTPKTLILD 244 (300)
T ss_dssp ECCSSC-CBCH--------HHHTTSCTTCEEEE
T ss_pred ECCChh-hhCH--------HHHHhCCCCCEEEE
Confidence 854322 2221 12367899998773
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=80.81 E-value=6.1 Score=35.31 Aligned_cols=74 Identities=23% Similarity=0.315 Sum_probs=52.3
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEec-------------hH-HHHHHHHHHHHcCCCCcEEEEEcccccc
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVEC-------------SQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~-------------s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (405)
..++++|-.|++.| .++..+++.|+ +|+.+|. ++ .++.+.+.+...+ .++.++..|+.+.
T Consensus 9 l~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~ 85 (277)
T 3tsc_A 9 LEGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN--RRIVAAVVDTRDF 85 (277)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCH
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCCCH
Confidence 46789999999887 45666777887 8999987 55 5555555555544 4589999998764
Q ss_pred cC-----C-----CCceeEEEEcc
Q 015534 184 EL-----P-----VTKVDIIISEW 197 (405)
Q Consensus 184 ~~-----~-----~~~~D~Iv~~~ 197 (405)
.. . -++.|++|.+.
T Consensus 86 ~~v~~~~~~~~~~~g~id~lvnnA 109 (277)
T 3tsc_A 86 DRLRKVVDDGVAALGRLDIIVANA 109 (277)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECC
Confidence 30 0 14799999863
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=80.74 E-value=4.3 Score=39.27 Aligned_cols=85 Identities=21% Similarity=0.179 Sum_probs=50.7
Q ss_pred CCCCCEEEEEcCCC-cHH-HHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 120 LFKDKVVLDVGAGT-GIL-SLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 120 ~~~~~~VLDiGcG~-G~l-~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
...|++|.-+|.|. |.. +..+...|+ +|+++|.++ ....|.. .| +++ .++.++. ...|+|+..
T Consensus 208 ~L~GktVgIiG~G~IG~~vA~~Lka~Ga-~Viv~D~~p~~a~~A~~----~G----~~~--~sL~eal---~~ADVVilt 273 (436)
T 3h9u_A 208 MIAGKTACVCGYGDVGKGCAAALRGFGA-RVVVTEVDPINALQAAM----EG----YQV--LLVEDVV---EEAHIFVTT 273 (436)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TT----CEE--CCHHHHT---TTCSEEEEC
T ss_pred cccCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCChhhhHHHHH----hC----Cee--cCHHHHH---hhCCEEEEC
Confidence 45789999999887 433 333334676 899999998 5544432 23 222 2444442 568999973
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
.-...+.... ....+|||++++
T Consensus 274 ~gt~~iI~~e--------~l~~MK~gAIVI 295 (436)
T 3h9u_A 274 TGNDDIITSE--------HFPRMRDDAIVC 295 (436)
T ss_dssp SSCSCSBCTT--------TGGGCCTTEEEE
T ss_pred CCCcCccCHH--------HHhhcCCCcEEE
Confidence 3111222222 236689998776
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=80.71 E-value=3.9 Score=36.97 Aligned_cols=75 Identities=12% Similarity=0.129 Sum_probs=52.7
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc-cC----------
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-EL---------- 185 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~---------- 185 (405)
..+++||-.|++.| .++..+++.|+ +|++++.++ -.+.+.+.+...+- .++.++..|+.+. ..
T Consensus 10 ~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~~~v~~~~~~~~~ 87 (311)
T 3o26_A 10 TKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNH-ENVVFHQLDVTDPIATMSSLADFIKT 87 (311)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTC-CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEccCCCcHHHHHHHHHHHHH
Confidence 35789999998876 34556666777 999999998 66666555555432 4699999999875 20
Q ss_pred CCCceeEEEEcc
Q 015534 186 PVTKVDIIISEW 197 (405)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (405)
..+.+|++|.+.
T Consensus 88 ~~g~iD~lv~nA 99 (311)
T 3o26_A 88 HFGKLDILVNNA 99 (311)
T ss_dssp HHSSCCEEEECC
T ss_pred hCCCCCEEEECC
Confidence 014799999864
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=80.57 E-value=7.7 Score=34.91 Aligned_cols=87 Identities=17% Similarity=0.174 Sum_probs=53.7
Q ss_pred CEEEEEcCCC-c-HHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 124 KVVLDVGAGT-G-ILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 124 ~~VLDiGcG~-G-~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
.+|.-||+|. | .++..+++.| ..+|+++|.++ .++.+.+ .+... ....+..+. -...|+|+....
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g~~~---~~~~~~~~~---~~~aDvVilavp- 75 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALE----RGIVD---EATADFKVF---AALADVIILAVP- 75 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH----TTSCS---EEESCTTTT---GGGCSEEEECSC-
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH----cCCcc---cccCCHHHh---hcCCCEEEEcCC-
Confidence 5799999987 3 4455566664 34899999998 7665543 34311 122233222 156899997432
Q ss_pred ccccChhhHHHHHHHHHhc-ccCCcEEE
Q 015534 200 YFLLFENMLNTVLYARDKW-LVDDGIVL 226 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~-LkpgG~li 226 (405)
......++..+... ++++..++
T Consensus 76 -----~~~~~~v~~~l~~~~l~~~~ivi 98 (290)
T 3b1f_A 76 -----IKKTIDFIKILADLDLKEDVIIT 98 (290)
T ss_dssp -----HHHHHHHHHHHHTSCCCTTCEEE
T ss_pred -----HHHHHHHHHHHHhcCCCCCCEEE
Confidence 23446677777777 88877666
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=80.41 E-value=4.4 Score=36.99 Aligned_cols=88 Identities=18% Similarity=0.168 Sum_probs=53.9
Q ss_pred CCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 123 DKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 123 ~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
..+|.-||+|. | .++..+++.|. +|+++|.++ .++.+.+ .|. .....+..+.. ...|+|+....
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~----~g~----~~~~~~~~e~~---~~aDvvi~~vp- 73 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGL-STWGADLNPQACANLLA----EGA----CGAAASAREFA---GVVDALVILVV- 73 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTC----SEEESSSTTTT---TTCSEEEECCS-
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHH----cCC----ccccCCHHHHH---hcCCEEEEECC-
Confidence 35799999987 3 45666677776 999999998 7665543 232 11233433332 56899987432
Q ss_pred ccccChhhHHHHH---HHHHhcccCCcEEEe
Q 015534 200 YFLLFENMLNTVL---YARDKWLVDDGIVLP 227 (405)
Q Consensus 200 ~~l~~~~~~~~~l---~~~~~~LkpgG~lip 227 (405)
.......++ ..+...|+||..++-
T Consensus 74 ----~~~~~~~v~~~~~~l~~~l~~g~ivv~ 100 (303)
T 3g0o_A 74 ----NAAQVRQVLFGEDGVAHLMKPGSAVMV 100 (303)
T ss_dssp ----SHHHHHHHHC--CCCGGGSCTTCEEEE
T ss_pred ----CHHHHHHHHhChhhHHhhCCCCCEEEe
Confidence 222344444 445567788777663
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=80.29 E-value=7.7 Score=34.83 Aligned_cols=75 Identities=11% Similarity=0.137 Sum_probs=52.8
Q ss_pred CCCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEec-hH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC--------
Q 015534 120 LFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVEC-SQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-------- 186 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~-s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-------- 186 (405)
...+++||-.|++.| .++..+++.|+ +|+.++. ++ .++...+.+...+ .++.++.+|+.+...-
T Consensus 26 ~~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~ 102 (280)
T 4da9_A 26 QKARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLG--ARVIFLRADLADLSSHQATVDAVV 102 (280)
T ss_dssp CCCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTT--CCEEEEECCTTSGGGHHHHHHHHH
T ss_pred ccCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHH
Confidence 356789999998887 35666777777 8999985 55 5555555555544 4589999999875310
Q ss_pred --CCceeEEEEcc
Q 015534 187 --VTKVDIIISEW 197 (405)
Q Consensus 187 --~~~~D~Iv~~~ 197 (405)
-++.|++|.+.
T Consensus 103 ~~~g~iD~lvnnA 115 (280)
T 4da9_A 103 AEFGRIDCLVNNA 115 (280)
T ss_dssp HHHSCCCEEEEEC
T ss_pred HHcCCCCEEEECC
Confidence 14789999864
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=80.22 E-value=12 Score=34.62 Aligned_cols=95 Identities=15% Similarity=0.209 Sum_probs=54.7
Q ss_pred CEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHH----cCCCCcEE--EEEcccccccCCCCceeEEE
Q 015534 124 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA----NGFSNVIT--VLKGKIEEIELPVTKVDIII 194 (405)
Q Consensus 124 ~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~----~~~~~~i~--~~~~d~~~~~~~~~~~D~Iv 194 (405)
.+|.-||+|. | .++..+++.|. +|+.+|.++ .++.+++.... .+...... ....+..+. ...+|+|+
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~D~vi 80 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA---VKDADVIL 80 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH---HTTCSEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHH---HhcCCEEE
Confidence 5799999987 3 45556666776 899999988 66655443100 00000000 111222221 14689998
Q ss_pred EccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.... ......++..+...+++|..++..
T Consensus 81 ~~v~------~~~~~~~~~~l~~~l~~~~~vv~~ 108 (359)
T 1bg6_A 81 IVVP------AIHHASIAANIASYISEGQLIILN 108 (359)
T ss_dssp ECSC------GGGHHHHHHHHGGGCCTTCEEEES
T ss_pred EeCC------chHHHHHHHHHHHhCCCCCEEEEc
Confidence 7432 123456777788889998876644
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=80.18 E-value=3.1 Score=37.60 Aligned_cols=75 Identities=13% Similarity=0.216 Sum_probs=50.1
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (405)
..+++||-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+...+- ..+.++.+|+.+... .
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~ 108 (281)
T 4dry_A 31 GEGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRPDVLDAAAGEIGGRTG-NIVRAVVCDVGDPDQVAALFAAVRAE 108 (281)
T ss_dssp ---CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHS-SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46789999998876 34566666777 899999998 66665555544332 336889999876431 0
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
-++.|++|.+.
T Consensus 109 ~g~iD~lvnnA 119 (281)
T 4dry_A 109 FARLDLLVNNA 119 (281)
T ss_dssp HSCCSEEEECC
T ss_pred cCCCCEEEECC
Confidence 14789999864
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=80.07 E-value=2 Score=39.81 Aligned_cols=47 Identities=17% Similarity=0.221 Sum_probs=32.7
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEech
Q 015534 108 KSYQNVIYQNKFLFKDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS 154 (405)
Q Consensus 108 ~~~~~~i~~~~~~~~~~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s 154 (405)
..+...|........+++||-+|+|. | ..+..|++.|+++|+.+.-+
T Consensus 133 ~Gf~~~L~~~~~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt 181 (312)
T 3t4e_A 133 TGHIRAIKESGFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRK 181 (312)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred HHHHHHHHhcCCCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 35566666544445788999999873 2 23445566888899999988
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 405 | ||||
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 1e-120 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 1e-109 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 1e-102 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 1e-09 | |
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 4e-09 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 1e-08 | |
| d2esra1 | 152 | c.66.1.46 (A:28-179) Putative methyltransferase SP | 7e-08 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 9e-07 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 2e-05 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 2e-05 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 2e-05 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 4e-05 | |
| d1ne2a_ | 197 | c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae | 1e-04 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 2e-04 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 2e-04 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 3e-04 | |
| d2dula1 | 375 | c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tR | 5e-04 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 6e-04 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 7e-04 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 0.001 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 0.001 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 0.003 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 0.004 |
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 349 bits (897), Expect = e-120
Identities = 188/316 (59%), Positives = 242/316 (76%)
Query: 90 SYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVY 149
SY+HFGIHEEMLKD VRT +Y+N ++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V
Sbjct: 1 SYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVI 60
Query: 150 AVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLN 209
+ECS +++ A +IV+AN +V+T++KGK+EE+ELPV KVDIIISEWMGY L +E+MLN
Sbjct: 61 GIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLN 120
Query: 210 TVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEP 269
TVL+ARDKWL DG++ PD+A+LY+TAIED +YKD KI +W NVYGFDMSCIK A+ EP
Sbjct: 121 TVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEP 180
Query: 270 LVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKC 329
LVD VD Q+VTN L+K +DI + D +FT+PF L +RNDY+HALVAYF++ FT+C
Sbjct: 181 LVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRC 240
Query: 330 HKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSL 389
HK GFST P+S THWKQTV Y+ED LT+ GE I G++ + PN KN RD+D +
Sbjct: 241 HKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDF 300
Query: 390 QGRHSAISRIQYYKMR 405
+G+ +S Y+MR
Sbjct: 301 KGQLCELSCSTDYRMR 316
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 321 bits (824), Expect = e-109
Identities = 166/327 (50%), Positives = 225/327 (68%), Gaps = 7/327 (2%)
Query: 85 DYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG 144
DYYFDSY H+GIHEEML+D VRT SY+N I QNK LFKDK+VLDVG GTGILS+F AK G
Sbjct: 1 DYYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHG 60
Query: 145 AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLF 204
A HV V+ S + MAK++VE NGFS+ IT+L+GK+E++ LP KVDIIISEWMGYFLL+
Sbjct: 61 AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLY 120
Query: 205 ENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQ 264
E+M++TVLYARD +LV+ G++ PDK S++L +ED++YKD+K+ +W +VYGFD S
Sbjct: 121 ESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYGFDYSPFVPL 180
Query: 265 AMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDV 324
+ EP+VDTV++N + T L D++ + D +F + FKL A+R D I+ +V +FD+
Sbjct: 181 VLHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDLAFKSNFKLTAKRQDMINGIVTWFDI 240
Query: 325 TF--TKCHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVD 382
F K + + FSTGP + THWKQT+ Y D L G+ I G L +PN+KN RD++
Sbjct: 241 VFPAPKGKRPVEFSTGPHAPYTHWKQTIFYFPDDLDAETGDTIEGELVCSPNEKNNRDLN 300
Query: 383 IMLKYSLQ-----GRHSAISRIQYYKM 404
I + Y + G + Y M
Sbjct: 301 IKISYKFESNGIDGNSRSRKNEGSYLM 327
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 304 bits (779), Expect = e-102
Identities = 149/306 (48%), Positives = 202/306 (66%), Gaps = 1/306 (0%)
Query: 88 FDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAH 147
F SY H+GIHEEMLKD +RT+SY++ IYQN +FKDKVVLDVG GTGILS+F AKAGA
Sbjct: 1 FSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKK 60
Query: 148 VYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENM 207
V V+ S++ A I+ N + IT++KGKIEE+ LPV KVD+IISEWMGYFLLFE+M
Sbjct: 61 VLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESM 120
Query: 208 LNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMM 267
L++VLYA++K+L G V PD ++ L A+ D D+I FW++VYGF MSC+KK +
Sbjct: 121 LDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADRIAFWDDVYGFKMSCMKKAVIP 180
Query: 268 EPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFT 327
E +V+ +D +++ +K +D D F++ F L R A+ YFD+ F
Sbjct: 181 EAVVEVLDPKTLISEPCGIKHIDCHTTSISDLEFSSDFTLKITRTSMCTAIAGYFDIYFE 240
Query: 328 K-CHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLK 386
K CH + FSTGP+S THWKQTV LE ++ GEA+ G +TV NKK+PR + + L
Sbjct: 241 KNCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSVKAGEALKGKVTVHKNKKDPRSLTVTLT 300
Query: 387 YSLQGR 392
+ +
Sbjct: 301 LNNSTQ 306
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 56.1 bits (134), Expect = 1e-09
Identities = 22/146 (15%), Positives = 41/146 (28%), Gaps = 7/146 (4%)
Query: 117 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITV 175
+ + VLD+G G G L +AG Y V+ ++ N A+ +
Sbjct: 19 RLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFF 78
Query: 176 LKGKI--EEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGI---VLPDKA 230
++L I Y L+ + L G +P +
Sbjct: 79 RAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRD 138
Query: 231 SLYLTAIEDAEYKDDKIEFWNNVYGF 256
+ L + +D +
Sbjct: 139 VI-LERYKQGRMSNDFYKIELEKMED 163
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 54.8 bits (131), Expect = 4e-09
Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 16/149 (10%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVL 176
K D++V+D+ AG G LSL A G A V A+E + + N + ++
Sbjct: 103 KVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAY 162
Query: 177 KGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTA 236
+ D I+ MGY + + L D I+ + T
Sbjct: 163 NMDNRDFP-GENIADRIL---MGYVVRTHEFIPKAL----SIAKDGAIIH-----YHNTV 209
Query: 237 IEDAEYKD--DKIEFWNNVYGFDMSCIKK 263
E ++ + + YG+D+ + +
Sbjct: 210 PEKLMPREPFETFKRITKEYGYDVEKLNE 238
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 52.1 bits (124), Expect = 1e-08
Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 1/129 (0%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 179
K+ V +DVG GTG ++L A + + + ++ +G + +T+++G
Sbjct: 31 PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGD 90
Query: 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIED 239
E + +DI + G L + ++ I+L + + + D
Sbjct: 91 APEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILL-ETKFEAMECLRD 149
Query: 240 AEYKDDKIE 248
+ + E
Sbjct: 150 LGFDVNITE 158
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Score = 49.1 bits (116), Expect = 7e-08
Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 12/142 (8%)
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVL--KG 178
F VLD+ AG+G L++ G + VE ++ A Q + L
Sbjct: 13 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKME 72
Query: 179 KIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL--------PDKA 230
I+ + D++ + + + A L + +V+ K
Sbjct: 73 AERAIDCLTGRFDLVFLDPPYAKETIVATIEAL--AAKNLLSEQVMVVCETDKTVLLPKE 130
Query: 231 SLYLTAIEDAEYKDDKIEFWNN 252
L ++ Y K+ + N
Sbjct: 131 IATLGIWKEKIYGISKVTVYVN 152
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 47.3 bits (111), Expect = 9e-07
Identities = 27/179 (15%), Positives = 62/179 (34%), Gaps = 11/179 (6%)
Query: 87 YFDSYSHFGIHEEMLKDVVRTKSYQNVIYQ--NKFLFKDKVVLDVGAGTGILSLFCAKAG 144
++ ++H I++++++ V K + + I + + LD+ GTG L+
Sbjct: 2 CYNKFAH--IYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF 59
Query: 145 AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLF 204
+M + A+ + G + I + + I +++
Sbjct: 60 KNTWAVDLSQEMLSEAENKFRSQGLKPRL--ACQDISNLNINRKFDLITCCLDSTNYIID 117
Query: 205 ENMLNTVLYARDKWLVDDGIVL-----PDKASLYLTAIEDAEYKDDKIEFWNNVYGFDM 258
+ L A L + G+ + K S L + D+ +W N + D+
Sbjct: 118 SDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDL 176
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.8 bits (102), Expect = 2e-05
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 2/91 (2%)
Query: 84 ADYYFDSYSHFGIHEEMLKDV-VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK 142
D Y D + + + + D RT Y+ + VLDV GTG+ S+ +
Sbjct: 18 PDQYADGEAAR-VWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVE 76
Query: 143 AGAAHVYAVECSQMANMAKQIVEANGFSNVI 173
G + +M A +
Sbjct: 77 EGFSVTSVDASDKMLKYALKERWNRRKEPAF 107
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 43.6 bits (101), Expect = 2e-05
Identities = 20/170 (11%), Positives = 52/170 (30%), Gaps = 5/170 (2%)
Query: 87 YFDSYSHF--GIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG 144
+ + + I+ ++ V + I++ + + VLD+ GTGI +L A+
Sbjct: 4 LYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAE-R 62
Query: 145 AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLF 204
V ++ + + + + + D + +
Sbjct: 63 GYEVVGLDLHEEMLRVARRKAKERNLKIEFL--QGDVLEIAFKNEFDAVTMFFSTIMYFD 120
Query: 205 ENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVY 254
E L + + L G+ + D + + +++ V
Sbjct: 121 EEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVI 170
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (100), Expect = 2e-05
Identities = 14/133 (10%), Positives = 39/133 (29%), Gaps = 8/133 (6%)
Query: 84 ADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA 143
Y +Y F ++++ + ++D+G+G I + A
Sbjct: 13 PRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACD 72
Query: 144 GAAHVYAVECS-QMANMAKQIVEANGFSN-------VITVLKGKIEEIELPVTKVDIIIS 195
+ + + + ++ ++ + L+G E K+ +
Sbjct: 73 SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVK 132
Query: 196 EWMGYFLLFENML 208
+ + N L
Sbjct: 133 RVLKCDVHLGNPL 145
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 42.2 bits (98), Expect = 4e-05
Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 4/101 (3%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIEL 185
VLD+GAG G +L + V+ ++ + +G E +
Sbjct: 20 VLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF 78
Query: 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
P DII Y + + + + L DG L
Sbjct: 79 PDDSFDII---TCRYAAHHFSDVRKAVREVARVLKQDGRFL 116
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 40.5 bits (94), Expect = 1e-04
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSN 171
+ V+D G G GIL+ GA V A + A AK+ F
Sbjct: 47 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMV 98
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 40.3 bits (93), Expect = 2e-04
Identities = 17/117 (14%), Positives = 37/117 (31%), Gaps = 11/117 (9%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 179
F+ +L++G+ G + + + VE S+ A Q +G +
Sbjct: 18 FFRPGNLLELGSFKGDFTSRLQEHF-NDITCVEASEEAISHAQGRLKDGITY-------I 69
Query: 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDG---IVLPDKASLY 233
E ++ + + D WL + G +V P+ ++
Sbjct: 70 HSRFEDAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVS 126
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 40.3 bits (93), Expect = 2e-04
Identities = 14/107 (13%), Positives = 32/107 (29%), Gaps = 3/107 (2%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 179
+ +LD+G+G+G + A+ ++ S + + +
Sbjct: 31 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHN 90
Query: 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
+ K D+ +G + + L GI+L
Sbjct: 91 DAAGYVANEKCDVAAC--VGATWIAGGFAGAEELLA-QSLKPGGIML 134
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 39.6 bits (91), Expect = 3e-04
Identities = 26/164 (15%), Positives = 55/164 (33%), Gaps = 27/164 (16%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 179
L ++ VLDV G G ++ A V A + ++ + + ++G
Sbjct: 13 LKGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGD 71
Query: 180 IEEIELPVTKVDIIISEWM---------------------GYFLLFENMLNT-----VLY 213
E++ + I+ G LL +N V Y
Sbjct: 72 AEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFY 131
Query: 214 ARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFD 257
+ D K S +L +E+A ++ +++ ++ + F+
Sbjct: 132 NYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHKTFIFE 175
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} Length = 375 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 39.6 bits (92), Expect = 5e-04
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMA-NMAKQIVEANGFSNV 172
+ K+VLD + TGI + A A V+ + S+ A + K+ V N +
Sbjct: 43 ILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGEL 97
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 38.4 bits (88), Expect = 6e-04
Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 17/142 (11%)
Query: 85 DYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG 144
+Y+ + Y H ++L + LD+G G G SL+ A G
Sbjct: 7 NYFTEKYGLTRTHSDVLAAAK--------------VVAPGRTLDLGCGNGRNSLYLAANG 52
Query: 145 AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLF 204
+ ++I A G N+ T L + D I+S + FL
Sbjct: 53 YDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNT--LTFDGEYDFILSTVVMMFLEA 110
Query: 205 ENMLNTVLYARDKWLVDDGIVL 226
+ + ++ + G L
Sbjct: 111 QT-IPGLIANMQRCTKPGGYNL 131
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.3 bits (91), Expect = 7e-04
Identities = 24/157 (15%), Positives = 54/157 (34%), Gaps = 7/157 (4%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK 177
L K +D+G+G G + A G A + E +++ E + ++
Sbjct: 214 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR 273
Query: 178 GKIEEIELPV--TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLT 235
E L + + ++ +N L+ D + I+ K +
Sbjct: 274 LNNVEFSLKKSFVDNNRVAELIPQCDVIL---VNNFLFDEDLNKKVEKILQTAKVGCKII 330
Query: 236 AIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVD 272
+++ +I F+N F+ +++ + E V
Sbjct: 331 SLKSLRSLTYQINFYNVENIFNRLKVQRYDLKEDSVS 367
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 37.7 bits (87), Expect = 0.001
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECS-QMANMAKQIVEANGFSNVITVL 176
L +L+VG G+G +S + A G + VE A + +
Sbjct: 83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTS 142
Query: 177 KGKI 180
+ I
Sbjct: 143 RSDI 146
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (88), Expect = 0.001
Identities = 15/75 (20%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVL 176
+ VL+ G+G+G +SLF +KA V + E + ++AK+ + S ++ +
Sbjct: 96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHV 155
Query: 177 KGKIEEIELPVTKVD 191
+ + ++ +
Sbjct: 156 EEWPDNVDFIHKDIS 170
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 36.8 bits (84), Expect = 0.003
Identities = 25/153 (16%), Positives = 45/153 (29%), Gaps = 7/153 (4%)
Query: 102 KDVVRTKSYQNVIYQNKF-LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMA 160
+D+ Y + + + + K ++D G G G L L +
Sbjct: 6 RDLYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLL 65
Query: 161 KQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLV 220
+ E + K DI I FLL T+L +
Sbjct: 66 AEARELFRLLPYDSEFLEGDATEIELNDKYDIAIC---HAFLLHMTTPETMLQKMIHSVK 122
Query: 221 DDGIVL---PDKASLYLTAIEDAEYKDDKIEFW 250
G ++ P S + + D E + + I+
Sbjct: 123 KGGKIICFEPHWISNMASYLLDGEKQSEFIQLG 155
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 35.9 bits (82), Expect = 0.004
Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 7/107 (6%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKGK 179
+D +L +GA G A VYA+E ++ I K
Sbjct: 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANK 133
Query: 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
+E V KVD + + N ++ +L G +
Sbjct: 134 PQEYANIVEKVD-----VIYEDVAQPNQAEILIKNAKWFLKKGGYGM 175
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 405 | |||
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 100.0 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 100.0 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 100.0 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.8 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.8 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.78 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.77 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.77 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.74 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.74 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.71 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.7 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.68 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.68 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.67 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.66 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.66 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.65 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.65 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.64 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.64 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.63 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.63 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.61 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.59 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.58 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.58 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.56 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.56 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.55 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.54 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.54 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.52 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.5 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.5 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.5 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.5 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.49 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.48 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.47 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.46 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.44 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.44 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.42 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.42 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.41 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.41 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.4 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.4 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.39 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.39 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.38 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.38 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.37 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.36 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.35 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.35 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.34 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.31 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.31 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.31 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.3 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.29 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.18 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.17 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.15 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.12 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.04 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.02 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.01 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.9 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.83 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.83 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.76 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.71 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.71 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.69 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.69 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.68 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.64 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.62 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.6 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.57 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.56 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.55 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.55 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.44 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.42 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.39 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.33 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.32 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.3 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.25 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.22 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.22 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.18 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.0 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.98 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.97 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.65 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.43 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.42 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.4 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.31 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.31 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.29 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 97.25 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 97.19 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.13 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 97.11 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.92 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.85 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.83 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.81 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.77 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.61 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.27 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.23 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.03 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 95.78 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 95.78 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.75 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.74 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.5 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 95.43 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.42 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.19 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 95.08 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 95.02 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 94.98 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 94.97 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 94.96 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 94.82 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 94.66 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 94.6 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 94.47 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 94.47 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 94.29 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 94.25 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 94.2 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 93.81 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 93.61 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 93.6 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 93.52 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 92.73 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 92.63 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 92.43 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 92.27 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 92.07 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 92.05 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 91.74 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 91.72 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 91.57 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 91.56 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 90.86 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 90.77 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 90.63 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 90.62 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 90.12 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 90.0 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 89.66 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 89.43 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 89.35 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 89.15 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 88.52 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 88.51 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 88.33 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 88.31 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 88.3 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 88.22 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 87.89 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 87.64 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 86.51 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 86.39 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 86.1 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 85.18 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 85.13 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 84.68 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 84.21 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 84.2 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 83.33 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 83.32 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 83.15 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 83.15 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 82.72 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 82.67 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 81.55 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 81.52 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 80.9 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 80.89 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 80.88 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 80.83 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 80.36 |
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1.1e-59 Score=447.75 Aligned_cols=316 Identities=59% Similarity=1.020 Sum_probs=299.4
Q ss_pred ccCchhhhHHhhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCC
Q 015534 90 SYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGF 169 (405)
Q Consensus 90 ~y~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~ 169 (405)
+|+++++|..|++|..|+..|.++|..+....+|++|||||||+|.+++.+|++|+++|+|+|.|+++..|++++..+++
T Consensus 1 ~y~~~~~h~~Ml~D~~R~~~y~~ai~~~~~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~ 80 (316)
T d1oria_ 1 SYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKL 80 (316)
T ss_dssp CHHHHHHHHHHHHCHHHHHHHHHHHHTCHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTC
T ss_pred CCccchHHHHHhCCHHHHHHHHHHHHhccccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCC
Confidence 46778999999999999999999998777778999999999999999999999999999999999944777888999999
Q ss_pred CCcEEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCceeEEEEccccccccccccc
Q 015534 170 SNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEF 249 (405)
Q Consensus 170 ~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~~~~~~ 249 (405)
.++++++++|+.+++++.++||+|+++++++++.++..++.++.++.++|||||.++|+.+++|++++++..++.....+
T Consensus 81 ~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP~~~~~~~~~v~~~~~~~~~~~~ 160 (316)
T d1oria_ 81 DHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHW 160 (316)
T ss_dssp TTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHHHHHHTTT
T ss_pred ccccceEeccHHHcccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEeeeEEEEEEEecCHHHHhhhccc
Confidence 99999999999999988889999999999999999999999999999999999999999999999999999888888899
Q ss_pred ccccccccchhhhhhhccCCeEEeeCCCcccccceeeeEeeCCCCCCCCCceeeeEEEEEeecceEeEEEEEEEEEEcCC
Q 015534 250 WNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTFTKC 329 (405)
Q Consensus 250 w~~~~g~~~~~~~~~~~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~ 329 (405)
|.+++|+|++.+...+..+|.+....+..++++|+.++++||.+...+++.+...+++.+.++|++|||++||+++|+++
T Consensus 161 ~~~~~g~d~~~~~~~~~~~~~v~~~~~~~~ls~p~~~~~~d~~~~~~~~l~~~~~~~~~~~~~g~~hg~~~wFd~~l~~~ 240 (316)
T d1oria_ 161 WENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRC 240 (316)
T ss_dssp TTCBTTBCCHHHHHHHHTSCEEECCCGGGEEEEEEEEEEEETTTCCGGGGSEEEEEEEEBCSSEEEEEEEEEEEEECTTS
T ss_pred ccccccccchhhhhhhccccEEEEecCceEeeCCEEeEEEcCCCCcccCccEEEEEEEeecCCceEEEEEEEEEEEeeCC
Confidence 99999999999999999999999888999999999999999999888888889999999999999999999999999976
Q ss_pred CceeEEecCCCCCCCCeeeEEEecCCceecCCCCEEEEEEEEeeCCCCCceEEEEEEEEEcceeeeecceEEeeeC
Q 015534 330 HKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 405 (405)
Q Consensus 330 ~~~~~lst~p~~~~~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (405)
.+++.+||+|..+.+||+|++|+|++|+.|++||+|+++++++++..++|+++|+++|++.|+..+...++.|+||
T Consensus 241 ~~~v~lST~P~~~~thW~Q~v~~l~~p~~v~~g~~i~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~y~~~ 316 (316)
T d1oria_ 241 HKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRMR 316 (316)
T ss_dssp SSCCEEECSTTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSSTTCEEEEEEEEEECSSCEEEEEEEEEEC
T ss_pred CCCeEEECCCCcCCCceecEEEEcCCceEcCCCCEEEEEEEEEECCCCCceEEEEEEEEecCeeeccccceeeecC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999997
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4e-58 Score=439.27 Aligned_cols=320 Identities=51% Similarity=0.910 Sum_probs=298.6
Q ss_pred cccccccCchhhhHHhhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHHHHHHHHH
Q 015534 85 DYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIV 164 (405)
Q Consensus 85 ~~~~~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~ 164 (405)
++||++|+++..|..|++|..|+..|.++|.++....++++|||||||+|.+++.+|++|+++|+|+|.|+++..|+++.
T Consensus 1 d~yf~~y~~~~~h~~ml~D~~r~~~y~~aI~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~ 80 (328)
T d1g6q1_ 1 DYYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELV 80 (328)
T ss_dssp CCCCCCCCCHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHH
T ss_pred CCcchhhcCchHHHHHhCCHHHHHHHHHHHHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHH
Confidence 46999999999999999999999999999988777788999999999999999999999999999999999778999999
Q ss_pred HHcCCCCcEEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCceeEEEEcccccccc
Q 015534 165 EANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKD 244 (405)
Q Consensus 165 ~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~ 244 (405)
..+++.++++++++++.+++++.++||+|+++++++++.++..+..++.++.++|||||+++|+.+++|+++++++.++.
T Consensus 81 ~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP~~~~~~~~~v~~~~l~~ 160 (328)
T d1g6q1_ 81 ELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKD 160 (328)
T ss_dssp HHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHHHH
T ss_pred HHhCccccceEEEeehhhccCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEeeecceeeecccCHHHHH
Confidence 99999999999999999999888899999999999999999999999999999999999999999999999999999998
Q ss_pred cccccccccccccchhhhhhhccCCeEEeeCCCcccccceeeeEeeCCCCCCCCCceeeeEEEEEeecceEeEEEEEEEE
Q 015534 245 DKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDV 324 (405)
Q Consensus 245 ~~~~~w~~~~g~~~~~~~~~~~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~ 324 (405)
....+|.+++|||++++......+|++..+.+..+++.|..+..+||.....+++.+...+++.+.++|++|||++||++
T Consensus 161 ~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~hg~~~wFd~ 240 (328)
T d1g6q1_ 161 EKLNYWQDVYGFDYSPFVPLVLHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDLAFKSNFKLTAKRQDMINGIVTWFDI 240 (328)
T ss_dssp HHHHHTTCBTTBCCTTHHHHHTTSCEEECCCGGGBCBCCEEEEEEETTTCCGGGGSEEEEEEEEBCSSCEEEEEEEEEEE
T ss_pred HhccccccccccccchhhhhhccCcEEEEecCceeecCceeEEEecccccchhhcceeeeEEEEecCCcEEEEEEEEEEE
Confidence 88889999999999999999999999999999999999999999999998888888899999999999999999999999
Q ss_pred EEcCC--CceeEEecCCCCCCCCeeeEEEecCCceecCCCCEEEEEEEEeeCCCCCceEEEEEEEEEccee-----eeec
Q 015534 325 TFTKC--HKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRH-----SAIS 397 (405)
Q Consensus 325 ~l~~~--~~~~~lst~p~~~~~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~-----~~~~ 397 (405)
+|+++ ..++.+||+|..+.+||+|++|+|++|+.|++||+|++++++.+++.+.|+++|+++|.+++.. .+.-
T Consensus 241 ~l~~~~~~~~i~lST~P~~~~thW~Q~v~~l~~pi~v~~gd~i~~~~~~~~~~~~~r~~~v~~~~~~~~~~~~~~~~~~~ 320 (328)
T d1g6q1_ 241 VFPAPKGKRPVEFSTGPHAPYTHWKQTIFYFPDDLDAETGDTIEGELVCSPNEKNNRDLNIKISYKFESNGIDGNSRSRK 320 (328)
T ss_dssp ECCCCTTSCCCEEECSTTSCCCTTCEEEEEEEEEEECCTTCEEEEEEEEEEETTEEEEEEEEEEEEEECCSSTHHHHCEE
T ss_pred EccCCCCCCceEEeCCCCCCCCceeeEEEEeCCceEeCCCCEEEEEEEEEECCCCCeeEEEEEEEEEEecCCCCccccee
Confidence 99863 3468999999999999999999999999999999999999999999999999999999876544 3355
Q ss_pred ceEEeee
Q 015534 398 RIQYYKM 404 (405)
Q Consensus 398 ~~~~~~~ 404 (405)
++++|-|
T Consensus 321 ~~~~~~~ 327 (328)
T d1g6q1_ 321 NEGSYLM 327 (328)
T ss_dssp EEEEEEE
T ss_pred ccceEec
Confidence 5677766
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-55 Score=418.70 Aligned_cols=303 Identities=49% Similarity=0.865 Sum_probs=283.0
Q ss_pred ccccCchhhhHHhhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHH
Q 015534 88 FDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA 166 (405)
Q Consensus 88 ~~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~ 166 (405)
|++|+.++.|..|++|..|+..|.++|.++....++++|||||||+|.+++.+|++|+++|+|+|.|+ +. .|++....
T Consensus 1 ~~~y~~~~~h~~ml~D~~r~~~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~-~a~~~~~~ 79 (311)
T d2fyta1 1 FSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILY-QAMDIIRL 79 (311)
T ss_dssp CCGGGSHHHHHHHHTCHHHHHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHH-HHHHHHHH
T ss_pred CCCcccchHHHHHhCCHHHHHHHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHH-HHHHHHHH
Confidence 67899999999999999999999999999888889999999999999999999999999999999999 75 56777788
Q ss_pred cCCCCcEEEEEcccccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCceeEEEEcccccccccc
Q 015534 167 NGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDK 246 (405)
Q Consensus 167 ~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~~~ 246 (405)
+++.++++++++|+.++.++.++||+|+++++++++.++..++.++.++.++|||||+++|+.+++|++++++..++...
T Consensus 80 ~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~~~~~~~~~v~~~~~~~~~ 159 (311)
T d2fyta1 80 NKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADR 159 (311)
T ss_dssp TTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHHHHHH
T ss_pred hCCCccceEEEeeHHHhcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEeccccceEEEEecCHHHHHhh
Confidence 88889999999999999988889999999999999999999999999999999999999999999999999998888888
Q ss_pred cccccccccccchhhhhhhccCCeEEeeCCCcccccceeeeEeeCCCCCCCCCceeeeEEEEEeecceEeEEEEEEEEEE
Q 015534 247 IEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTAPFKLVAQRNDYIHALVAYFDVTF 326 (405)
Q Consensus 247 ~~~w~~~~g~~~~~~~~~~~~~p~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l 326 (405)
..+|.+++|++++++.+....+|++...++..++++|+.++++||.+...+++.....+++.+.++|++|||++||+++|
T Consensus 160 ~~~~~~~~G~d~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~Wfd~~f 239 (311)
T d2fyta1 160 IAFWDDVYGFKMSCMKKAVIPEAVVEVLDPKTLISEPCGIKHIDCHTTSISDLEFSSDFTLKITRTSMCTAIAGYFDIYF 239 (311)
T ss_dssp TGGGGCBTTBCCGGGHHHHTTBCEEECCCGGGBCBCCEEEEEEETTTCCGGGGSEEEEEEEEBCSCEEEEEEEEEEEEEE
T ss_pred hccccccccccccchhhccccccEEEecChhheecCCEeEEEeccCcCccccccEEEEEEeeecCCcceEEEEEEEEEEE
Confidence 88999999999999999988999999999999999999999999999888888889999999999999999999999998
Q ss_pred cC-CCceeEEecCCCCCCCCeeeEEEecCCceecCCCCEEEEEEEEeeCCCCCceEEEEEEEEEcc
Q 015534 327 TK-CHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQG 391 (405)
Q Consensus 327 ~~-~~~~~~lst~p~~~~~~W~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~ 391 (405)
+. .++++++||+|..+.+||+|++|+|++|++|++||+|++++++.++..+.|+++|+++++.++
T Consensus 240 ~~~~~~~~~lST~P~~~~thW~q~~~~l~~p~~v~~gd~l~~~~~~~~~~~~~r~~~~~~~~~~~~ 305 (311)
T d2fyta1 240 EKNCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSVKAGEALKGKVTVHKNKKDPRSLTVTLTLNNST 305 (311)
T ss_dssp CTTCSSCEEEECSTTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSCTTSEEEEEEETTEE
T ss_pred ECCCCCceEEeCCCCcCCCccccEEEEeCCceEeCCCCEEEEEEEEEECCCCCEEEEEEEEEeCCc
Confidence 75 246899999999999999999999999999999999999999999999999999888765443
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.80 E-value=4.1e-19 Score=160.99 Aligned_cols=117 Identities=21% Similarity=0.322 Sum_probs=97.5
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (405)
.+...+.......++++|||||||+|.++..+++.|+ +|+|||+|+ |++.|++++...++ +++++++|+++++++
T Consensus 28 ~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~~~- 103 (251)
T d1wzna1 28 DFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFK- 103 (251)
T ss_dssp HHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCC-
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccccc--cchheehhhhhcccc-
Confidence 3444455445667778999999999999999999987 999999999 99999999998876 499999999999887
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
++||+|+|........+......+++.++++|||||++++..
T Consensus 104 ~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 104 NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 799999995322233455677899999999999999998754
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.80 E-value=1.4e-19 Score=162.73 Aligned_cols=111 Identities=20% Similarity=0.300 Sum_probs=97.9
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015534 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (405)
Q Consensus 112 ~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (405)
+.+.+....++|.+|||||||+|.++..+++.+. +|+|||+|+ |++.|++++..++++ ++.++++|++++++++++|
T Consensus 6 ~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~~f 83 (234)
T d1xxla_ 6 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESLPFPDDSF 83 (234)
T ss_dssp HHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBCCSCTTCE
T ss_pred HHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhcccccc-ccccccccccccccccccc
Confidence 3455557789999999999999999999999864 999999999 999999999999884 5999999999999988999
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+|+|..+ +.+..++..+++++.++|||||+++.
T Consensus 84 D~v~~~~~---l~~~~d~~~~l~~~~r~LkpgG~~~~ 117 (234)
T d1xxla_ 84 DIITCRYA---AHHFSDVRKAVREVARVLKQDGRFLL 117 (234)
T ss_dssp EEEEEESC---GGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred ceeeeece---eecccCHHHHHHHHHHeeCCCcEEEE
Confidence 99999554 44446788999999999999999875
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=6.2e-19 Score=159.57 Aligned_cols=117 Identities=15% Similarity=0.133 Sum_probs=100.0
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (405)
...+.+.....+.+|.+|||||||+|.++..+++....+|+|||+|+ |++.|+++....+++++++|+.+|+.++. ++
T Consensus 20 ~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~-~~ 98 (245)
T d1nkva_ 20 EKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV-AN 98 (245)
T ss_dssp HHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC-CS
T ss_pred HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcc-cc
Confidence 34455666678899999999999999999999885335999999999 99999999999999999999999999984 56
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
++||+|+|..+.+ +..++..++.++.++|||||++++..
T Consensus 99 ~~fD~v~~~~~~~---~~~d~~~~l~~~~r~LkPGG~l~i~~ 137 (245)
T d1nkva_ 99 EKCDVAACVGATW---IAGGFAGAEELLAQSLKPGGIMLIGE 137 (245)
T ss_dssp SCEEEEEEESCGG---GTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred CceeEEEEEehhh---ccCCHHHHHHHHHHHcCcCcEEEEEe
Confidence 8999999965533 33567899999999999999998753
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.77 E-value=7.4e-19 Score=157.27 Aligned_cols=107 Identities=19% Similarity=0.218 Sum_probs=93.8
Q ss_pred ccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015534 117 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (405)
Q Consensus 117 ~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (405)
...+.++.+|||||||+|.++..+++.|. +|+|+|+|+ |++.|++++...+.+ +++++++|++++++++++||+|+|
T Consensus 10 ~~~l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~~-~i~~~~~d~~~l~~~~~~fD~v~~ 87 (231)
T d1vl5a_ 10 IAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQMPFTDERFHIVTC 87 (231)
T ss_dssp HHTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CCCSCTTCEEEEEE
T ss_pred hcCCCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhcccccccc-cccccccccccccccccccccccc
Confidence 35678899999999999999999999875 999999999 999999999998884 599999999999988899999999
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
..+ +++..++..++.++.++|||||+++..
T Consensus 88 ~~~---l~~~~d~~~~l~~~~r~LkpgG~l~i~ 117 (231)
T d1vl5a_ 88 RIA---AHHFPNPASFVSEAYRVLKKGGQLLLV 117 (231)
T ss_dssp ESC---GGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccc---ccccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 654 334467889999999999999998863
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.77 E-value=9.9e-19 Score=161.58 Aligned_cols=117 Identities=19% Similarity=0.146 Sum_probs=101.4
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (405)
.+...+.....+.++.+|||||||+|.++..+++....+|+|+|+|+ |++.|+++....|+.++++++++|+.++++++
T Consensus 54 ~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~ 133 (282)
T d2o57a1 54 WLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCED 133 (282)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCT
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccc
Confidence 45555666677889999999999999999999985334999999999 99999999999999999999999999999888
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
++||+|++..+. .+.+++..++.++.++|||||+++..
T Consensus 134 ~sfD~V~~~~~l---~h~~d~~~~l~~~~~~LkpgG~l~~~ 171 (282)
T d2o57a1 134 NSYDFIWSQDAF---LHSPDKLKVFQECARVLKPRGVMAIT 171 (282)
T ss_dssp TCEEEEEEESCG---GGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccchhhccchh---hhccCHHHHHHHHHHhcCCCcEEEEE
Confidence 999999996543 33467788999999999999998864
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.74 E-value=2.9e-18 Score=155.11 Aligned_cols=104 Identities=20% Similarity=0.218 Sum_probs=90.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc-c
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE-W 197 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~-~ 197 (405)
..++++|||||||+|.++..+++.|. +|+|+|+|+ |++.|+++....++ +++++++|+.++.++ ++||+|+|. .
T Consensus 35 ~~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~~~-~~fD~i~~~~~ 110 (246)
T d1y8ca_ 35 NLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNIN-RKFDLITCCLD 110 (246)
T ss_dssp TCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCS-CCEEEEEECTT
T ss_pred CCCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCc--cceeeccchhhhccc-ccccccceeee
Confidence 34567999999999999999999976 999999999 99999999988886 499999999999876 799999983 2
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
..+++.+...+..+++.++++|||||.++.
T Consensus 111 ~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~ 140 (246)
T d1y8ca_ 111 STNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp GGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred eeeccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 234455677888999999999999999985
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.74 E-value=1.1e-17 Score=148.73 Aligned_cols=113 Identities=19% Similarity=0.204 Sum_probs=93.8
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (405)
+...+.+. ..++.+|||||||+|.++..+++.|. +|+|+|+|+ |++.|++++...+. .+.++.+|+.+++++++
T Consensus 27 ~~~~~~~~--l~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~~d~~~l~~~~~ 101 (226)
T d1ve3a1 27 LEPLLMKY--MKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRES--NVEFIVGDARKLSFEDK 101 (226)
T ss_dssp HHHHHHHS--CCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCTTSCCSCTT
T ss_pred HHHHHHHh--cCCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhccccc--cccccccccccccccCc
Confidence 33444433 35778999999999999999999876 899999999 99999999988774 47889999999998889
Q ss_pred ceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+||+|+|..+.+++ ...++..+++.+.++|||||+++..
T Consensus 102 ~fD~I~~~~~l~~~-~~~d~~~~l~~i~~~LkpgG~lii~ 140 (226)
T d1ve3a1 102 TFDYVIFIDSIVHF-EPLELNQVFKEVRRVLKPSGKFIMY 140 (226)
T ss_dssp CEEEEEEESCGGGC-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CceEEEEecchhhC-ChhHHHHHHHHHHHHcCcCcEEEEE
Confidence 99999997654444 2346778999999999999998753
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.71 E-value=1.9e-17 Score=143.33 Aligned_cols=111 Identities=23% Similarity=0.302 Sum_probs=94.8
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (405)
.+..+.......++.+|||||||+|.+++.+|+. +.+|+|+|+++ +++.|+++++.+++.++++++++|+.+...+.+
T Consensus 21 ir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~ 99 (186)
T d1l3ia_ 21 VRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIP 99 (186)
T ss_dssp HHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSC
T ss_pred HHHHHHHhcCCCCCCEEEEEECCeEccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccC
Confidence 3344445567789999999999999999999987 45999999999 999999999999998899999999998877778
Q ss_pred ceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.||+|++.... .....++..+.+.|||||+++.
T Consensus 100 ~~D~v~~~~~~------~~~~~~~~~~~~~LkpgG~lvi 132 (186)
T d1l3ia_ 100 DIDIAVVGGSG------GELQEILRIIKDKLKPGGRIIV 132 (186)
T ss_dssp CEEEEEESCCT------TCHHHHHHHHHHTEEEEEEEEE
T ss_pred CcCEEEEeCcc------ccchHHHHHHHHHhCcCCEEEE
Confidence 99999986431 3456788999999999999874
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.70 E-value=3.7e-17 Score=148.29 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=93.9
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC-CCCceeEEEEc
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-PVTKVDIIISE 196 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~Iv~~ 196 (405)
...++.+|||||||+|..+..+++.|.++|+|+|+|+ |++.|+++....+...++.+.++|+....+ ..++||+|+|.
T Consensus 21 ~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~ 100 (252)
T d1ri5a_ 21 YTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 100 (252)
T ss_dssp HCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred hCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEc
Confidence 3568899999999999999999998888999999999 999999999888877789999999977664 35789999997
Q ss_pred ccccc-ccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 197 WMGYF-LLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 197 ~~~~~-l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.+.++ +..+..+..++..+.++|||||+++.
T Consensus 101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~ 132 (252)
T d1ri5a_ 101 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIM 132 (252)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred ceeeecCCCHHHHHHHHHHHhceeCCCCEEEE
Confidence 65444 34567788999999999999999885
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.68 E-value=1.3e-16 Score=139.34 Aligned_cols=103 Identities=20% Similarity=0.236 Sum_probs=90.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
.++.+|||||||+|..+..+++.|. +|+|+|+|+ |++.|+++....+++ ++++...|+..+..+ ++||+|++..+.
T Consensus 29 ~~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~d~~~~~~~-~~fD~I~~~~~~ 105 (198)
T d2i6ga1 29 VAPGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGLD-NLQTDLVDLNTLTFD-GEYDFILSTVVM 105 (198)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCT-TEEEEECCTTTCCCC-CCEEEEEEESCG
T ss_pred CCCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhcccc-chhhhheeccccccc-ccccEEEEeeee
Confidence 3455999999999999999999987 999999999 999999999999885 599999999998765 899999997665
Q ss_pred ccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+++ .......++..+.++|+|||+++.
T Consensus 106 ~~~-~~~~~~~~l~~~~~~L~pgG~~~~ 132 (198)
T d2i6ga1 106 MFL-EAQTIPGLIANMQRCTKPGGYNLI 132 (198)
T ss_dssp GGS-CTTHHHHHHHHHHHTEEEEEEEEE
T ss_pred ecC-CHHHHHHHHHHHHHHcCCCcEEEE
Confidence 554 345678899999999999999875
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.68 E-value=2.6e-17 Score=148.17 Aligned_cols=98 Identities=26% Similarity=0.364 Sum_probs=81.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc-c
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE-W 197 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~-~ 197 (405)
..++.+|||+|||+|.++..+++.|+ +|+|+|+|+ |++.|+++. . ..++.+|++++++++++||+|+|. .
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~----~---~~~~~~~~~~l~~~~~~fD~ii~~~~ 111 (246)
T d2avna1 40 LKNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKG----V---KNVVEAKAEDLPFPSGAFEAVLALGD 111 (246)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHT----C---SCEEECCTTSCCSCTTCEEEEEECSS
T ss_pred cCCCCEEEEECCCCchhcccccccce-EEEEeeccccccccccccc----c---cccccccccccccccccccceeeecc
Confidence 45778999999999999999999977 899999999 999998752 2 236789999999888999999984 3
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+.+ +..++..+++.+.++|||||.++..
T Consensus 112 ~~~---~~~d~~~~l~~i~r~Lk~gG~~ii~ 139 (246)
T d2avna1 112 VLS---YVENKDKAFSEIRRVLVPDGLLIAT 139 (246)
T ss_dssp HHH---HCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhh---hhhhHHHHHHHHHhhcCcCcEEEEE
Confidence 333 3356778999999999999999864
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=4.5e-17 Score=144.87 Aligned_cols=108 Identities=19% Similarity=0.187 Sum_probs=90.9
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
...++.+|||||||+|.++..+++.+..+|+|||+|+ |++.|++++...+. .+++|+++|+++++++.++||+|++..
T Consensus 57 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~-~~~~f~~~d~~~~~~~~~~fD~I~~~~ 135 (222)
T d2ex4a1 57 NKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTPEPDSYDVIWIQW 135 (222)
T ss_dssp -CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred CCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc-ccccccccccccccccccccccccccc
Confidence 3456789999999999999988776677999999999 99999999888776 458999999999988779999999976
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+.+++. .+....++..+.++|||||.++..
T Consensus 136 ~l~h~~-~~~~~~~l~~i~~~Lk~~G~~~i~ 165 (222)
T d2ex4a1 136 VIGHLT-DQHLAEFLRRCKGSLRPNGIIVIK 165 (222)
T ss_dssp CGGGSC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccch-hhhhhhHHHHHHHhcCCcceEEEE
Confidence 655442 234568999999999999998864
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.66 E-value=4.1e-16 Score=143.11 Aligned_cols=114 Identities=16% Similarity=0.092 Sum_probs=97.4
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015534 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (405)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (405)
.+.+.....+.+|.+|||||||.|.++..+++. |+ +|+|+|+|+ +++.|++++++.++..++.+...|..+++ +
T Consensus 41 ~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~---~ 116 (280)
T d2fk8a1 41 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---E 116 (280)
T ss_dssp HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---C
T ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhc---c
Confidence 445666678899999999999999999999985 65 999999999 99999999999999888999998887663 7
Q ss_pred ceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+||.|++..+..++ +....+.+++.+.++|||||+++.+.
T Consensus 117 ~fD~i~si~~~eh~-~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 117 PVDRIVSIEAFEHF-GHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp CCSEEEEESCGGGT-CGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred chhhhhHhhHHHHh-hhhhHHHHHHHHHhccCCCceEEEEE
Confidence 89999996665444 34577899999999999999998653
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.66 E-value=1.5e-16 Score=143.55 Aligned_cols=110 Identities=23% Similarity=0.363 Sum_probs=90.7
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (405)
+....+++.. ...+|.+|||+|||+|.+++.+++.|+ +|+|+|+|+ +++.|+++++.+++. ++++++|+.+. +
T Consensus 107 T~l~l~~l~~--~~~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~~--~~~~~~d~~~~-~ 180 (254)
T d2nxca1 107 TRLALKALAR--HLRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAA-L 180 (254)
T ss_dssp HHHHHHHHHH--HCCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHH-G
T ss_pred hhHHHHHHHh--hcCccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCCc--eeEEecccccc-c
Confidence 4455555653 346899999999999999999999876 899999999 999999999999985 57889998765 3
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+.++||+|+++... ..+..++..+.++|||||+++.+
T Consensus 181 ~~~~fD~V~ani~~------~~l~~l~~~~~~~LkpGG~lilS 217 (254)
T d2nxca1 181 PFGPFDLLVANLYA------ELHAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp GGCCEEEEEEECCH------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccchhhhcccc------ccHHHHHHHHHHhcCCCcEEEEE
Confidence 44899999997542 35567888899999999999853
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.65 E-value=3.6e-16 Score=136.01 Aligned_cols=110 Identities=21% Similarity=0.286 Sum_probs=91.7
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCC-cEEEEEcccccccCCCCcee
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKIEEIELPVTKVD 191 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~D 191 (405)
+.+.....++.+|||+|||+|.+++.+++.+ .+|+++|+|+ +++.|++++..+++.+ +++++.+|+.+ .+++++||
T Consensus 44 Li~~l~~~~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD 121 (194)
T d1dusa_ 44 LVENVVVDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYN 121 (194)
T ss_dssp HHHHCCCCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEE
T ss_pred HHHhCCcCCCCeEEEEeecCChhHHHHHhhc-cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccCCce
Confidence 3444567789999999999999999999874 5999999999 9999999999999864 69999999977 45568999
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|+++++.+. .......++..+.++|+|||.++.
T Consensus 122 ~Ii~~~p~~~--~~~~~~~~l~~~~~~LkpgG~l~i 155 (194)
T d1dusa_ 122 KIITNPPIRA--GKEVLHRIIEEGKELLKDNGEIWV 155 (194)
T ss_dssp EEEECCCSTT--CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEcccEEe--cchhhhhHHHHHHHhcCcCcEEEE
Confidence 9999876332 234567889999999999999864
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.65 E-value=4.1e-16 Score=138.84 Aligned_cols=106 Identities=19% Similarity=0.259 Sum_probs=90.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc---CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKA---GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~---g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (405)
..++.+|||||||+|..+..+++. +..+|+|+|+|+ |++.|++++...+...++++..+|..+++. +.+|+|++
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~--~~~d~i~~ 114 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI--KNASMVIL 114 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCC--CSEEEEEE
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcccc--ccceeeEE
Confidence 468889999999999999999983 345999999999 999999999988877789999999887654 68899999
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
..+.+++ +..+...+++.+++.|||||.++..
T Consensus 115 ~~~l~~~-~~~d~~~~l~~i~~~LkpgG~li~~ 146 (225)
T d1im8a_ 115 NFTLQFL-PPEDRIALLTKIYEGLNPNGVLVLS 146 (225)
T ss_dssp ESCGGGS-CGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred eeecccc-ChhhHHHHHHHHHHhCCCCceeecc
Confidence 7655443 4567889999999999999999864
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.64 E-value=1.4e-15 Score=139.94 Aligned_cols=116 Identities=18% Similarity=0.073 Sum_probs=96.6
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (405)
..+.+.....+.+|.+|||||||.|.++..+|+ .|+ +|+|+++|+ +++.|++++...++.+++++...|.... +
T Consensus 49 k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~---~ 124 (291)
T d1kpia_ 49 KRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---D 124 (291)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---C
T ss_pred HHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc---c
Confidence 345566667899999999999999999999887 665 999999999 9999999999999999999999887543 4
Q ss_pred CceeEEEEccccccccC------hhhHHHHHHHHHhcccCCcEEEecC
Q 015534 188 TKVDIIISEWMGYFLLF------ENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~------~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
++||.|+|..+..++.. ....+.+++.+.++|||||+++.+.
T Consensus 125 ~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 125 EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 172 (291)
T ss_dssp CCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred cccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 89999999554433322 2457899999999999999998654
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.64 E-value=1.3e-15 Score=139.73 Aligned_cols=116 Identities=21% Similarity=0.186 Sum_probs=98.6
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (405)
...+.+.....+.+|.+|||||||.|.+++.+|+ .|+ +|+|+++|+ .++.|++++...++.+++++..+|..+++
T Consensus 49 ~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~-- 125 (285)
T d1kpga_ 49 AKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-- 125 (285)
T ss_dssp HHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--
T ss_pred HHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc--
Confidence 3445666678889999999999999999999888 665 999999999 99999999999999999999999998774
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
++||.|++-.+..++.+ .....+++.+.++|||||+++.+.
T Consensus 126 -~~fD~i~si~~~eh~~~-~~~~~~~~~~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 126 -EPVDRIVSIGAFEHFGH-ERYDAFFSLAHRLLPADGVMLLHT 166 (285)
T ss_dssp -CCCSEEEEESCGGGTCT-TTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred -ccccceeeehhhhhcCc-hhHHHHHHHHHhhcCCCCcEEEEE
Confidence 78999999655444432 456789999999999999998654
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.63 E-value=2e-16 Score=137.38 Aligned_cols=108 Identities=12% Similarity=-0.015 Sum_probs=87.0
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCC-----------CCcEEEEEcccccccC
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF-----------SNVITVLKGKIEEIEL 185 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~-----------~~~i~~~~~d~~~~~~ 185 (405)
+...++.+|||+|||+|..+..+|+.|+ +|+|+|+|+ |++.|++++...+. ...++++.+|+.++..
T Consensus 16 l~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 94 (201)
T d1pjza_ 16 LNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA 94 (201)
T ss_dssp HCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccc
Confidence 4567999999999999999999999987 999999999 99999998865432 1235788888877653
Q ss_pred C-CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 186 P-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 186 ~-~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
. ...||+|++..+.+++ .......++..+.++|||||.++.
T Consensus 95 ~~~~~~D~i~~~~~l~~l-~~~~~~~~~~~i~~~LkpgG~l~l 136 (201)
T d1pjza_ 95 RDIGHCAAFYDRAAMIAL-PADMRERYVQHLEALMPQACSGLL 136 (201)
T ss_dssp HHHHSEEEEEEESCGGGS-CHHHHHHHHHHHHHHSCSEEEEEE
T ss_pred ccccceeEEEEEeeeEec-chhhhHHHHHHHHHhcCCCcEEEE
Confidence 2 3689999997655444 345677899999999999999864
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.63 E-value=5.6e-16 Score=140.49 Aligned_cols=110 Identities=19% Similarity=0.212 Sum_probs=90.8
Q ss_pred HhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEE
Q 015534 115 YQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193 (405)
Q Consensus 115 ~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~I 193 (405)
.+.....++.+|||+|||+|.++..++..+..+|++||+|+ |++.|++++... .+++++++|+.++++++++||+|
T Consensus 86 l~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~I 162 (254)
T d1xtpa_ 86 IASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPPNTYDLI 162 (254)
T ss_dssp HHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCSSCEEEE
T ss_pred HhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc---ccceeEEccccccccCCCccceE
Confidence 33455567789999999999999988775566999999999 999999886543 45899999999998887899999
Q ss_pred EEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
++.++.+++. ...+..++..+.++|+|||.++..
T Consensus 163 ~~~~vl~hl~-d~d~~~~l~~~~~~LkpgG~iii~ 196 (254)
T d1xtpa_ 163 VIQWTAIYLT-DADFVKFFKHCQQALTPNGYIFFK 196 (254)
T ss_dssp EEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred Eeeccccccc-hhhhHHHHHHHHHhcCCCcEEEEE
Confidence 9987655552 345668899999999999998853
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.61 E-value=1.2e-15 Score=140.44 Aligned_cols=114 Identities=19% Similarity=0.223 Sum_probs=92.9
Q ss_pred HHHHHHHhc-cCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc
Q 015534 109 SYQNVIYQN-KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (405)
Q Consensus 109 ~~~~~i~~~-~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (405)
.|...+... ....++.+|||||||+|.++..+++. + ..+|+|+|+|+ +++.|++++...+. +++|+++|+.+++
T Consensus 13 d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~~ 90 (281)
T d2gh1a1 13 DYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIE 90 (281)
T ss_dssp HHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTCC
T ss_pred HHHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--ccccccccccccc
Confidence 445545433 24567789999999999999999983 3 35899999999 99999999988775 5999999999988
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
++ ++||+|+|..+.+ +..++..+++.+.++|||||.++..
T Consensus 91 ~~-~~fD~v~~~~~l~---~~~d~~~~l~~~~~~LkpgG~lii~ 130 (281)
T d2gh1a1 91 LN-DKYDIAICHAFLL---HMTTPETMLQKMIHSVKKGGKIICF 130 (281)
T ss_dssp CS-SCEEEEEEESCGG---GCSSHHHHHHHHHHTEEEEEEEEEE
T ss_pred cc-CCceEEEEehhhh---cCCCHHHHHHHHHHHcCcCcEEEEE
Confidence 76 7899999976544 4456788999999999999998753
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.59 E-value=8e-16 Score=136.94 Aligned_cols=98 Identities=20% Similarity=0.302 Sum_probs=82.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
.++.+|||||||+|.++..+++.|. +|+|+|+|+ +++.|+++.. ++++++.++++++.++ ++||+|++..+
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~-----~~~~~~~~~~~~~~~~-~~fD~I~~~~v- 90 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLK-----DGITYIHSRFEDAQLP-RRYDNIVLTHV- 90 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSC-----SCEEEEESCGGGCCCS-SCEEEEEEESC-
T ss_pred CCCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhcccc-----cccccccccccccccc-cccccccccce-
Confidence 5677899999999999999999876 899999999 9999987643 4599999999998775 89999999655
Q ss_pred ccccChhhHHHHHHHHH-hcccCCcEEEec
Q 015534 200 YFLLFENMLNTVLYARD-KWLVDDGIVLPD 228 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~-~~LkpgG~lip~ 228 (405)
+.|..++..++..+. ++|+|||.++..
T Consensus 91 --leh~~d~~~~l~~i~~~~Lk~gG~l~i~ 118 (225)
T d2p7ia1 91 --LEHIDDPVALLKRINDDWLAEGGRLFLV 118 (225)
T ss_dssp --GGGCSSHHHHHHHHHHTTEEEEEEEEEE
T ss_pred --eEecCCHHHHHHHHHHHhcCCCceEEEE
Confidence 444467778888886 899999998853
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.58 E-value=2e-15 Score=139.67 Aligned_cols=121 Identities=18% Similarity=0.124 Sum_probs=87.6
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCC---CcEEEEEccccc
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS---NVITVLKGKIEE 182 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~---~~i~~~~~d~~~ 182 (405)
...+.+.+.......++.+|||||||+|.++..+++.|. +|+|+|+|+ |++.|+++....+.. ....+...++..
T Consensus 41 ~~~~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (292)
T d1xvaa_ 41 TAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT 119 (292)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred HHHHHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccc
Confidence 334444444444456678999999999999999999986 899999999 999999998877643 123455555543
Q ss_pred cc--C-CCCceeEEEEcc-ccccccC----hhhHHHHHHHHHhcccCCcEEEec
Q 015534 183 IE--L-PVTKVDIIISEW-MGYFLLF----ENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 183 ~~--~-~~~~~D~Iv~~~-~~~~l~~----~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+. + ..++||+|+|.. ...++.. ......+++.+.++|||||++|+.
T Consensus 120 ~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 120 LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp HHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence 32 1 247899999842 1222322 245778999999999999999863
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=2.8e-15 Score=133.70 Aligned_cols=117 Identities=14% Similarity=-0.092 Sum_probs=92.9
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcC----------------CCC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANG----------------FSN 171 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~----------------~~~ 171 (405)
.+.+.+.+.....++.+|||+|||+|..+..+|+.|+ +|+|||+|+ +++.|++.....+ ...
T Consensus 32 ~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (229)
T d2bzga1 32 LLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSG 110 (229)
T ss_dssp HHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTS
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCC
Confidence 3444454445567889999999999999999999988 999999999 9999988765321 124
Q ss_pred cEEEEEccccccc-CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 172 VITVLKGKIEEIE-LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 172 ~i~~~~~d~~~~~-~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+++++++|+.++. ...+.||+|+...+.+++ +......++..+.++|||||.++.
T Consensus 111 ~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~-~~~~r~~~~~~~~~~LkpgG~~~l 166 (229)
T d2bzga1 111 NISLYCCSIFDLPRTNIGKFDMIWDRGALVAI-NPGDRKCYADTMFSLLGKKFQYLL 166 (229)
T ss_dssp SEEEEESCGGGGGGSCCCCEEEEEESSSTTTS-CGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred cEEEEEcchhhccccccCceeEEEEEEEEEec-cchhhHHHHHHHHhhcCCcceEEE
Confidence 6899999998875 345799999987654444 446778899999999999998764
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=4.3e-15 Score=132.48 Aligned_cols=105 Identities=20% Similarity=0.230 Sum_probs=87.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc--cCCCCceeEEEEcc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--ELPVTKVDIIISEW 197 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~Iv~~~ 197 (405)
.+|.+|||||||+|..+..+++.+..+|+|||+|+ +++.|+++....+ .++.++..++... .++.++||.|+.+.
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~fD~i~fD~ 129 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYDT 129 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc--cccccccccccccccccccccccceeecc
Confidence 57889999999999999999997667999999999 9999999987765 4588888887665 35678999999754
Q ss_pred c--cccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 198 M--GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 198 ~--~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+ .+.+.+..+...++..+.|+|||||+++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~ 161 (229)
T d1zx0a1 130 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTY 161 (229)
T ss_dssp CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred cccccccccccCHHHHHHHHHHHcCCCcEEEE
Confidence 3 23445556778899999999999999875
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.56 E-value=2.5e-15 Score=131.86 Aligned_cols=92 Identities=23% Similarity=0.267 Sum_probs=77.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
.++.+|||||||+|.++..+ .+++|+|+|+ |++.|+++ +++++++|++++++++++||+|++..+.
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~-----~~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~~~~~~fD~I~~~~~l 101 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPL-----KIKIGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTTI 101 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHH-----TCCEEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred CCCCeEEEECCCCccccccc-----ceEEEEeCChhhccccccc--------cccccccccccccccccccccccccccc
Confidence 45668999999999987766 2579999999 99998863 3899999999999888999999996654
Q ss_pred ccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+ +..++..++.++.++|+|||.+++.
T Consensus 102 ~---h~~d~~~~l~~~~~~L~pgG~l~i~ 127 (208)
T d1vlma_ 102 C---FVDDPERALKEAYRILKKGGYLIVG 127 (208)
T ss_dssp G---GSSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred c---cccccccchhhhhhcCCCCceEEEE
Confidence 4 4467889999999999999998854
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.55 E-value=3e-15 Score=124.73 Aligned_cols=104 Identities=20% Similarity=0.250 Sum_probs=86.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc-cCCCCceeEEEEccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDIIISEWM 198 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~Iv~~~~ 198 (405)
..|.+|||+|||+|.+++.++.+|+++|+++|.++ +++.+++++..+++.++++++++|+..+ ....++||+|++++.
T Consensus 13 ~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 13 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 57899999999999999999999999999999999 9999999999999999999999999875 233589999999874
Q ss_pred cccccChhhHHHHHHHH--HhcccCCcEEEec
Q 015534 199 GYFLLFENMLNTVLYAR--DKWLVDDGIVLPD 228 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~--~~~LkpgG~lip~ 228 (405)
+. .......+..+ .++|+|||.++.+
T Consensus 93 -y~---~~~~~~~l~~i~~~~~L~~~g~iiiE 120 (152)
T d2esra1 93 -YA---KETIVATIEALAAKNLLSEQVMVVCE 120 (152)
T ss_dssp -SH---HHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred -hc---cchHHHHHHHHHHCCCcCCCeEEEEE
Confidence 21 23344445544 3679999999864
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.54 E-value=5.9e-15 Score=132.41 Aligned_cols=106 Identities=15% Similarity=0.090 Sum_probs=87.3
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (405)
.|.....+.+|.+|||+|||+|.++..+|+. +..+|+++|.++ +++.|++++...+..+++++.++|+.+. ++++.
T Consensus 76 ~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~ 154 (250)
T d1yb2a1 76 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQM 154 (250)
T ss_dssp -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCC
T ss_pred HHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccce
Confidence 3455577899999999999999999999984 356999999999 9999999999887778899999999887 44589
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
||.|++++. .+..++..+.++|||||+++.
T Consensus 155 fD~V~ld~p--------~p~~~l~~~~~~LKpGG~lv~ 184 (250)
T d1yb2a1 155 YDAVIADIP--------DPWNHVQKIASMMKPGSVATF 184 (250)
T ss_dssp EEEEEECCS--------CGGGSHHHHHHTEEEEEEEEE
T ss_pred eeeeeecCC--------chHHHHHHHHHhcCCCceEEE
Confidence 999997642 334678888999999999885
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.54 E-value=8.9e-15 Score=132.06 Aligned_cols=107 Identities=27% Similarity=0.327 Sum_probs=90.7
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHc--CCCCcEEEEEcccccccCCC
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEAN--GFSNVITVLKGKIEEIELPV 187 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~--~~~~~i~~~~~d~~~~~~~~ 187 (405)
.|.....+.+|.+|||+|||+|.++..+|+. | ..+|+++|+++ +++.|+++++.. +..++++++++|+.+..+++
T Consensus 87 ~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~ 166 (264)
T d1i9ga_ 87 QIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPD 166 (264)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCT
T ss_pred HHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccC
Confidence 4555577899999999999999999999994 4 56999999999 999999998864 34578999999999988888
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+.||.|++++ +++..++..+.++|||||+++.
T Consensus 167 ~~fDaV~ldl--------p~P~~~l~~~~~~LkpGG~lv~ 198 (264)
T d1i9ga_ 167 GSVDRAVLDM--------LAPWEVLDAVSRLLVAGGVLMV 198 (264)
T ss_dssp TCEEEEEEES--------SCGGGGHHHHHHHEEEEEEEEE
T ss_pred CCcceEEEec--------CCHHHHHHHHHhccCCCCEEEE
Confidence 9999999753 3445678889999999999874
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.52 E-value=5.1e-14 Score=127.36 Aligned_cols=113 Identities=22% Similarity=0.235 Sum_probs=90.7
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCcee
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (405)
.+.......+.++|||||||+|.++..+++. +..+++++|++++++.+++++...++.++++++.+|+.+. .+ .+||
T Consensus 71 ~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-~~-~~~D 148 (253)
T d1tw3a2 71 APAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEP-LP-RKAD 148 (253)
T ss_dssp HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSC-CS-SCEE
T ss_pred HHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhh-cc-cchh
Confidence 3344455667789999999999999999984 4569999998339999999999999999999999998763 33 6799
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+|++..+.+++ .......+++++.+.|||||+++..
T Consensus 149 ~v~~~~vlh~~-~d~~~~~~L~~~~~~LkPGG~l~i~ 184 (253)
T d1tw3a2 149 AIILSFVLLNW-PDHDAVRILTRCAEALEPGGRILIH 184 (253)
T ss_dssp EEEEESCGGGS-CHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred heeeccccccC-CchhhHHHHHHHHHhcCCCcEEEEE
Confidence 99987654443 2344568899999999999998853
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.50 E-value=3.4e-14 Score=133.00 Aligned_cols=109 Identities=25% Similarity=0.262 Sum_probs=90.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEE
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIII 194 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv 194 (405)
..+|.+|||+|||+|.+++.++..|+++|+++|+|+ +++.|++++..||+.++++++++|+.+.. ....+||+|+
T Consensus 143 ~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi 222 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 222 (324)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence 467899999999999999999999999999999999 99999999999999889999999987642 2347899999
Q ss_pred EccccccccChh-------hHHHHHHHHHhcccCCcEEEecC
Q 015534 195 SEWMGYFLLFEN-------MLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 195 ~~~~~~~l~~~~-------~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+++..+ ..+.. ....++..+.++|+|||+++.+.
T Consensus 223 ~DpP~~-~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s 263 (324)
T d2as0a2 223 LDPPAF-VQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS 263 (324)
T ss_dssp ECCCCS-CSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cCCccc-cCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 987533 22222 23457778889999999998543
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.50 E-value=7.5e-14 Score=122.76 Aligned_cols=104 Identities=23% Similarity=0.169 Sum_probs=83.4
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHH-cC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCce
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (405)
+.+...+.+|.+|||||||+|.++..+++ .| ..+|+++|+++ +++.|++++...++. ++.++++|..+.....++|
T Consensus 67 ~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~-n~~~~~~d~~~~~~~~~~f 145 (213)
T d1dl5a1 67 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYYGVPEFSPY 145 (213)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGGCCE
T ss_pred HHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhccc-ccccccCchHHccccccch
Confidence 34446788999999999999999999998 34 45899999999 999999999999885 5889999998876666789
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+|++..... + .+ ..+.+.|||||+++.
T Consensus 146 D~I~~~~~~~---~--~p----~~l~~~LkpGG~lv~ 173 (213)
T d1dl5a1 146 DVIFVTVGVD---E--VP----ETWFTQLKEGGRVIV 173 (213)
T ss_dssp EEEEECSBBS---C--CC----HHHHHHEEEEEEEEE
T ss_pred hhhhhhccHH---H--hH----HHHHHhcCCCcEEEE
Confidence 9999865322 1 11 234577999999863
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=6e-14 Score=127.36 Aligned_cols=131 Identities=19% Similarity=0.208 Sum_probs=102.9
Q ss_pred hhhhHHhhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCC
Q 015534 94 FGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSN 171 (405)
Q Consensus 94 ~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~ 171 (405)
+......+-+++.++.+.+...... ...+.+|||+|||+|.+++.++. .+..+|+|+|+|+ +++.|++++..+++.
T Consensus 81 ~~v~~~VlIPRpeTE~lv~~~l~~~-~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~- 158 (274)
T d2b3ta1 81 LFVSPATLIPRPDTECLVEQALARL-PEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK- 158 (274)
T ss_dssp EECCTTSCCCCTTHHHHHHHHHHHS-CSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-
T ss_pred EEEeccccccccchhhhhhhHhhhh-cccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcc-
Confidence 4455567778888888877665533 34567899999999999999988 5667999999999 999999999999994
Q ss_pred cEEEEEcccccccCCCCceeEEEEcccccccc-----------Ch------------hhHHHHHHHHHhcccCCcEEEec
Q 015534 172 VITVLKGKIEEIELPVTKVDIIISEWMGYFLL-----------FE------------NMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 172 ~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~-----------~~------------~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+++++++|+.+. ++..+||+|+|++. |.-. ++ .....++....++|+|||.++..
T Consensus 159 ~v~~~~~d~~~~-~~~~~fDlIvsNPP-Yi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE 236 (274)
T d2b3ta1 159 NIHILQSDWFSA-LAGQQFAMIVSNPP-YIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE 236 (274)
T ss_dssp SEEEECCSTTGG-GTTCCEEEEEECCC-CBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred cceeeecccccc-cCCCceeEEEecch-hhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE
Confidence 599999999774 34479999999974 3211 11 22456888889999999998863
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.50 E-value=4.2e-14 Score=123.88 Aligned_cols=103 Identities=23% Similarity=0.201 Sum_probs=84.3
Q ss_pred ccCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC---Ccee
Q 015534 117 NKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV---TKVD 191 (405)
Q Consensus 117 ~~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~---~~~D 191 (405)
...+.||.+|||||||+|..+..+++ .+..+|+|+|+|+ |++.|+++++..+ ++.++.+|........ ..+|
T Consensus 51 ~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~---ni~~i~~d~~~~~~~~~~~~~vd 127 (209)
T d1nt2a_ 51 RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDASKPWKYSGIVEKVD 127 (209)
T ss_dssp CCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTTCGGGTTTTCCCEE
T ss_pred cCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC---CceEEEeeccCccccccccceEE
Confidence 36678999999999999999999998 5667999999999 9999999988764 5999999998765432 4566
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|+++ +.+......++.++.++|||||.++.
T Consensus 128 ~v~~~-----~~~~~~~~~~l~~~~~~LkpgG~l~i 158 (209)
T d1nt2a_ 128 LIYQD-----IAQKNQIEILKANAEFFLKEKGEVVI 158 (209)
T ss_dssp EEEEC-----CCSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEec-----ccChhhHHHHHHHHHHHhccCCeEEE
Confidence 66653 22345677889999999999999874
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.49 E-value=2.8e-14 Score=129.07 Aligned_cols=99 Identities=20% Similarity=0.165 Sum_probs=85.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
..+|.+|||+|||+|.+++.+|+.|+++|+|+|+|+ +++.|+++++.|++.++++++++|+.++... +.||.|+++++
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~-~~~D~Ii~~~p 183 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE-NIADRILMGYV 183 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC-SCEEEEEECCC
T ss_pred cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccC-CCCCEEEECCC
Confidence 468999999999999999999998878999999999 9999999999999999999999999988654 88999998754
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
... ..++..+.++|+|||++.
T Consensus 184 ~~~-------~~~l~~a~~~l~~gG~lh 204 (260)
T d2frna1 184 VRT-------HEFIPKALSIAKDGAIIH 204 (260)
T ss_dssp SSG-------GGGHHHHHHHEEEEEEEE
T ss_pred Cch-------HHHHHHHHhhcCCCCEEE
Confidence 321 234555668899999875
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=4.7e-14 Score=128.67 Aligned_cols=93 Identities=19% Similarity=0.192 Sum_probs=77.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
..++.+|||||||+|.++..+++.+ ..+|+|+|+|+ |++.|++.. .+++++++|+.++++++++||+|++..
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l~~~~~sfD~v~~~~ 155 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTSMDAIIRIY 155 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTCEEEEEEES
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc------ccccceeeehhhccCCCCCEEEEeecC
Confidence 4567899999999999999999964 45999999999 999998753 358999999999999889999999843
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
. +.+ +.++.|+|||||.++..
T Consensus 156 ~---~~~-------~~e~~rvLkpgG~l~~~ 176 (268)
T d1p91a_ 156 A---PCK-------AEELARVVKPGGWVITA 176 (268)
T ss_dssp C---CCC-------HHHHHHHEEEEEEEEEE
T ss_pred C---HHH-------HHHHHHHhCCCcEEEEE
Confidence 2 221 35678999999999853
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.47 E-value=7.5e-14 Score=126.60 Aligned_cols=106 Identities=20% Similarity=0.204 Sum_probs=89.9
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (405)
.|.....+.+|.+|||+|||+|.++..+|+. | ..+|+++|+++ +++.|+++++..++.+++.+...|+... ++...
T Consensus 94 ~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~-~~~~~ 172 (266)
T d1o54a_ 94 FIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKD 172 (266)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCS
T ss_pred HHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccc-ccccc
Confidence 4555577899999999999999999999984 3 46999999999 9999999999999988999999997654 34478
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
||.|+... +.+..++..+.++|||||+++.
T Consensus 173 ~D~V~~d~--------p~p~~~l~~~~~~LKpGG~lv~ 202 (266)
T d1o54a_ 173 VDALFLDV--------PDPWNYIDKCWEALKGGGRFAT 202 (266)
T ss_dssp EEEEEECC--------SCGGGTHHHHHHHEEEEEEEEE
T ss_pred eeeeEecC--------CCHHHHHHHHHhhcCCCCEEEE
Confidence 99998643 3456778999999999999874
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.46 E-value=1.8e-13 Score=119.23 Aligned_cols=105 Identities=13% Similarity=0.133 Sum_probs=84.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEcc
Q 015534 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEW 197 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~~ 197 (405)
.+..|||||||+|..+..+|+ .+...++|||+++ ++..|.+++...++. ++.++++|+..+. ++++++|.|++..
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~-Nv~~~~~Da~~l~~~~~~~~~d~v~i~f 107 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVFEPGEVKRVYLNF 107 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhcc-CchhcccchhhhhcccCchhhhcccccc
Confidence 345899999999999999998 5567999999999 999999999999995 6999999998875 6778999998754
Q ss_pred ccccccChh-----hHHHHHHHHHhcccCCcEEEe
Q 015534 198 MGYFLLFEN-----MLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 198 ~~~~l~~~~-----~~~~~l~~~~~~LkpgG~lip 227 (405)
......... ..+.++..++++|||||.|+.
T Consensus 108 p~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i 142 (204)
T d2fcaa1 108 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHF 142 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEE
T ss_pred ccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEE
Confidence 322221110 125789999999999999875
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.44 E-value=2.9e-13 Score=120.09 Aligned_cols=105 Identities=14% Similarity=0.116 Sum_probs=81.0
Q ss_pred ccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEE
Q 015534 117 NKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDII 193 (405)
Q Consensus 117 ~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~I 193 (405)
...+.+|.+|||||||+|..+..+++. +...|+|+|+|+ |++.|++++... +++.++.+|..... ..+..+|++
T Consensus 69 ~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~~~~~~~~v~ 145 (230)
T d1g8sa_ 69 VMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIVEKVD 145 (230)
T ss_dssp CCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTCCCEE
T ss_pred hCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh---cccceEEEeeccCcccccccceeE
Confidence 356789999999999999999999995 456999999999 999999887655 34778888877654 223455554
Q ss_pred EEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
++. ..+.+......++.++.++|||||.++.
T Consensus 146 ~i~---~~~~~~~~~~~~l~~~~r~LKpgG~~~i 176 (230)
T d1g8sa_ 146 VIY---EDVAQPNQAEILIKNAKWFLKKGGYGMI 176 (230)
T ss_dssp EEE---ECCCSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred Eee---ccccchHHHHHHHHHHHHhcccCceEEE
Confidence 441 1233446778889999999999998774
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.44 E-value=7.1e-13 Score=119.80 Aligned_cols=113 Identities=22% Similarity=0.177 Sum_probs=90.4
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (405)
+..........+|||||||+|.++..+++ .+..+++++|++++++.|++++...++.++++++.+|..+ +.+ .+||+
T Consensus 73 ~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p-~~~D~ 150 (256)
T d1qzza2 73 PADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFK-PLP-VTADV 150 (256)
T ss_dssp HHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-CCEEE
T ss_pred HHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc-ccchh
Confidence 34444456668999999999999999999 4556999999844999999999999999999999999876 344 57999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
|++..+.+.. .......+++++++.|||||+++...
T Consensus 151 v~~~~vLh~~-~d~~~~~lL~~i~~~LkpgG~llI~d 186 (256)
T d1qzza2 151 VLLSFVLLNW-SDEDALTILRGCVRALEPGGRLLVLD 186 (256)
T ss_dssp EEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcccccccc-CcHHHHHHHHHHHhhcCCcceeEEEE
Confidence 9986654433 23455688999999999999888543
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=4.8e-13 Score=118.30 Aligned_cols=100 Identities=19% Similarity=0.180 Sum_probs=80.7
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCC----CcEEEEEcccccccCCCCcee
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFS----NVITVLKGKIEEIELPVTKVD 191 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~----~~i~~~~~d~~~~~~~~~~~D 191 (405)
...+|.+|||||||+|.++..+|+. | ..+|+++|.++ +++.|++++.+.++. ++++++.+|......+.++||
T Consensus 73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD 152 (224)
T d1i1na_ 73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYD 152 (224)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhh
Confidence 5689999999999999999999983 4 56999999999 999999999876642 468999999988776667999
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|++... +.+ .+ ..+.+.|||||+++.
T Consensus 153 ~I~~~~~---~~~--ip----~~l~~~LkpGG~LV~ 179 (224)
T d1i1na_ 153 AIHVGAA---APV--VP----QALIDQLKPGGRLIL 179 (224)
T ss_dssp EEEECSB---BSS--CC----HHHHHTEEEEEEEEE
T ss_pred hhhhhcc---hhh--cC----HHHHhhcCCCcEEEE
Confidence 9998643 211 11 235588999999873
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=2.3e-13 Score=127.55 Aligned_cols=114 Identities=19% Similarity=0.253 Sum_probs=88.8
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHc-------CC-CCcEEEEEccc
Q 015534 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEAN-------GF-SNVITVLKGKI 180 (405)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~-------~~-~~~i~~~~~d~ 180 (405)
...+.+...+.++.+|||||||+|.++..+|+ .|+++++|||+|+ +++.|++..... |+ ..+++++++|+
T Consensus 140 ~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~ 219 (328)
T d1nw3a_ 140 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF 219 (328)
T ss_dssp HHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCT
T ss_pred HHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcc
Confidence 34445556788999999999999999999887 6778999999999 999998876542 22 24699999999
Q ss_pred ccccCCCC--ceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 181 EEIELPVT--KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 181 ~~~~~~~~--~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.+.++.+. .+|+|+++.+ . +.+.+...+.++.+.|||||++|..
T Consensus 220 ~~~~~~~~~~~advi~~~~~---~-f~~~~~~~l~e~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 220 LSEEWRERIANTSVIFVNNF---A-FGPEVDHQLKERFANMKEGGRIVSS 265 (328)
T ss_dssp TSHHHHHHHHHCSEEEECCT---T-TCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred cccccccccCcceEEEEcce---e-cchHHHHHHHHHHHhCCCCcEEEEe
Confidence 88765432 3588887543 2 2356678888999999999999853
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.41 E-value=2.7e-13 Score=114.87 Aligned_cols=114 Identities=15% Similarity=0.148 Sum_probs=82.4
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc--ccC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE--IEL 185 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~ 185 (405)
.+.+.|.. ...+|.+|||+|||+|.+++.++..|+ +|+++|.++ +++.++++++.+++.+++....+|... ...
T Consensus 30 ~lf~~l~~--~~~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~ 106 (171)
T d1ws6a1 30 ALFDYLRL--RYPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKA 106 (171)
T ss_dssp HHHHHHHH--HCTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHH
T ss_pred HHHHHhhc--cccCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccc
Confidence 34444442 346788999999999999999999987 899999999 999999999999998766555555321 123
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
..++||+|++++. |.......+..++. ..+|+|||+++.+
T Consensus 107 ~~~~fD~If~DPP-Y~~~~~~~l~~l~~--~~ll~~~g~ivie 146 (171)
T d1ws6a1 107 QGERFTVAFMAPP-YAMDLAALFGELLA--SGLVEAGGLYVLQ 146 (171)
T ss_dssp TTCCEEEEEECCC-TTSCTTHHHHHHHH--HTCEEEEEEEEEE
T ss_pred cCCccceeEEccc-cccCHHHHHHHHHH--cCCcCCCeEEEEE
Confidence 3478999999875 32222233333332 3689999998753
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.41 E-value=1.7e-13 Score=127.63 Aligned_cols=107 Identities=21% Similarity=0.212 Sum_probs=85.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIIS 195 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv~ 195 (405)
.+|++|||++||+|.+++.+|+ |+++|+++|+|+ +++.|++++..||+. +++++++|+.++. ...++||+|++
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl~-~~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCCC-CcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 4689999999999999999886 466999999999 999999999999995 5999999987742 23478999999
Q ss_pred ccccccccC------hhhHHHHHHHHHhcccCCcEEEecC
Q 015534 196 EWMGYFLLF------ENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 196 ~~~~~~l~~------~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
++..+.... ......++..+.++|+|||.++.++
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~s 261 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATAS 261 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 875332211 1233467778889999999988543
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=3.3e-13 Score=125.44 Aligned_cols=107 Identities=20% Similarity=0.270 Sum_probs=84.1
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHc----------CCCCcEEEEEcc
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEAN----------GFSNVITVLKGK 179 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~----------~~~~~i~~~~~d 179 (405)
.|.....+.+|.+|||+|||+|.++..+|+. | ..+|+++|+++ +++.|+++++.. ++.+++++.++|
T Consensus 89 ~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~d 168 (324)
T d2b25a1 89 MILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD 168 (324)
T ss_dssp HHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred HHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecc
Confidence 3445567899999999999999999999994 3 46999999999 999999999864 345789999999
Q ss_pred ccccc--CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 180 IEEIE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 180 ~~~~~--~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+.+.. ++...||.|+.++. .+..++..+.++|||||+++.
T Consensus 169 i~~~~~~~~~~~fD~V~LD~p--------~P~~~l~~~~~~LKpGG~lv~ 210 (324)
T d2b25a1 169 ISGATEDIKSLTFDAVALDML--------NPHVTLPVFYPHLKHGGVCAV 210 (324)
T ss_dssp TTCCC-------EEEEEECSS--------STTTTHHHHGGGEEEEEEEEE
T ss_pred hhhcccccCCCCcceEeecCc--------CHHHHHHHHHHhccCCCEEEE
Confidence 98764 34578999997532 233567888999999999874
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.40 E-value=5.3e-13 Score=123.96 Aligned_cols=110 Identities=16% Similarity=0.139 Sum_probs=90.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCC-CcEEEEEccccccc----CCCCceeEE
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIE----LPVTKVDII 193 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~----~~~~~~D~I 193 (405)
..+|++|||++||+|.+++.++..|+.+|++||+|+ +++.|++++..|++. ++++++.+|+.+.. ...++||+|
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I 221 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 221 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence 457899999999999999999999999999999999 999999999999985 57999999997652 234689999
Q ss_pred EEccccccc------cChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 194 ISEWMGYFL------LFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 194 v~~~~~~~l------~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
++++..+.- ........++..+.++|+|||+++.+.
T Consensus 222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~s 263 (317)
T d2b78a2 222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST 263 (317)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 998753211 112345678888899999999998643
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.39 E-value=8.1e-13 Score=116.38 Aligned_cols=101 Identities=22% Similarity=0.221 Sum_probs=78.9
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeE
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (405)
+.+...+.++.+|||||||+|.++..+++.+ .+|+++|.++ +++.|++++... ++++++.+|........++||+
T Consensus 62 ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~d~~~g~~~~~pfD~ 137 (224)
T d1vbfa_ 62 MLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYY---NNIKLILGDGTLGYEEEKPYDR 137 (224)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTC---SSEEEEESCGGGCCGGGCCEEE
T ss_pred HHHHhhhcccceEEEecCCCCHHHHHHHHHh-cccccccccHHHHHHHHHHHhcc---cccccccCchhhcchhhhhHHH
Confidence 3444678899999999999999999999984 5999999999 999999887643 5699999998765444578999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|++... +.+ .+ ..+.+.|||||+++.
T Consensus 138 Iiv~~a---~~~--ip----~~l~~qLk~GGrLV~ 163 (224)
T d1vbfa_ 138 VVVWAT---APT--LL----CKPYEQLKEGGIMIL 163 (224)
T ss_dssp EEESSB---BSS--CC----HHHHHTEEEEEEEEE
T ss_pred HHhhcc---hhh--hh----HHHHHhcCCCCEEEE
Confidence 998542 211 22 234478999999863
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.39 E-value=4.7e-13 Score=122.90 Aligned_cols=125 Identities=19% Similarity=0.109 Sum_probs=94.7
Q ss_pred hhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCC-cEEEEE
Q 015534 100 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLK 177 (405)
Q Consensus 100 ~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~ 177 (405)
++.|...+..+...... ...++.+|||++||+|.+++.+++.|+ +|++||.|+ +++.|++++..|++.+ ++++++
T Consensus 112 ~f~dqr~nr~~~~~~~~--~~~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~ 188 (309)
T d2igta1 112 VFPEQIVHWEWLKNAVE--TADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWIC 188 (309)
T ss_dssp CCGGGHHHHHHHHHHHH--HSSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEEC
T ss_pred cccchhHHHHHHHHHHh--hccCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEe
Confidence 44444444444443332 235688999999999999999999888 899999999 9999999999999874 699999
Q ss_pred ccccccc----CCCCceeEEEEccccccccC-------hhhHHHHHHHHHhcccCCcEEEe
Q 015534 178 GKIEEIE----LPVTKVDIIISEWMGYFLLF-------ENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 178 ~d~~~~~----~~~~~~D~Iv~~~~~~~l~~-------~~~~~~~l~~~~~~LkpgG~lip 227 (405)
+|+.++. ....+||+||+++..+.... +.....++..+.++|+|||.++.
T Consensus 189 ~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll 249 (309)
T d2igta1 189 EDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLV 249 (309)
T ss_dssp SCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEE
T ss_pred CCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 9997753 22478999999875332211 24456777888899999997653
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=8.9e-14 Score=125.64 Aligned_cols=110 Identities=11% Similarity=0.096 Sum_probs=80.2
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCc-------------------------
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNV------------------------- 172 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~------------------------- 172 (405)
...++.+|||||||+|.++..++..+..+|+|+|+|+ |++.|++++...+....
T Consensus 48 ~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (257)
T d2a14a1 48 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 127 (257)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence 3456789999999999998888887777999999999 99999999876553210
Q ss_pred ---E-EEEEcccc----cccCCCCceeEEEEccccccc-cChhhHHHHHHHHHhcccCCcEEEec
Q 015534 173 ---I-TVLKGKIE----EIELPVTKVDIIISEWMGYFL-LFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 173 ---i-~~~~~d~~----~~~~~~~~~D~Iv~~~~~~~l-~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+ .....+.. ..+.+.++||+|++..+.+++ .....+..+++.+.++|||||.+|..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~ 192 (257)
T d2a14a1 128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTT 192 (257)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEE
Confidence 0 11111111 123446899999996554443 23457788999999999999998853
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.38 E-value=1.8e-12 Score=112.72 Aligned_cols=105 Identities=16% Similarity=0.171 Sum_probs=84.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCCCceeEEEEcc
Q 015534 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEW 197 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~~ 197 (405)
....|||||||+|.++..+|+ .+...++|+|+++ ++..|.+++...+++ ++.++.+|+.++. ++..++|.|++..
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~-Ni~~~~~da~~l~~~~~~~~~~~i~i~f 109 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVP-NIKLLWVDGSDLTDYFEDGEIDRLYLNF 109 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCS-SEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccc-cceeeecCHHHHhhhccCCceehhcccc
Confidence 345899999999999999998 5677999999999 999999999999995 5999999998875 5678999998754
Q ss_pred ccccccC--h---hhHHHHHHHHHhcccCCcEEEe
Q 015534 198 MGYFLLF--E---NMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 198 ~~~~l~~--~---~~~~~~l~~~~~~LkpgG~lip 227 (405)
.....-. . -..+.++..+.++|||||.+++
T Consensus 110 PdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i 144 (204)
T d1yzha1 110 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHF 144 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEE
T ss_pred cccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEE
Confidence 3221100 0 0126789999999999999875
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=3.2e-13 Score=123.76 Aligned_cols=105 Identities=20% Similarity=0.152 Sum_probs=77.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc------C-CCeEEEEechH-HHHHHHHHHHHcCCCCcE--EEEEcccccc------
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKA------G-AAHVYAVECSQ-MANMAKQIVEANGFSNVI--TVLKGKIEEI------ 183 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~------g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i--~~~~~d~~~~------ 183 (405)
..++.+|||||||+|.++..+++. + ..+++|||+|+ |++.|++++........+ .+...+++++
T Consensus 38 ~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (280)
T d1jqea_ 38 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLE 117 (280)
T ss_dssp TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTT
T ss_pred CCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcc
Confidence 344458999999999988777652 1 23689999999 999999988764432334 4455555432
Q ss_pred cCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
..+.++||+|++..+ +++..++..++..+.++|+|||.++.
T Consensus 118 ~~~~~~fD~I~~~~~---l~~~~d~~~~l~~l~~~LkpgG~l~i 158 (280)
T d1jqea_ 118 KKELQKWDFIHMIQM---LYYVKDIPATLKFFHSLLGTNAKMLI 158 (280)
T ss_dssp SSSCCCEEEEEEESC---GGGCSCHHHHHHHHHHTEEEEEEEEE
T ss_pred cCCCCceeEEEEccc---eecCCCHHHHHHHHHhhCCCCCEEEE
Confidence 244689999999554 44446788999999999999998874
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.36 E-value=7.9e-13 Score=116.83 Aligned_cols=103 Identities=21% Similarity=0.264 Sum_probs=82.9
Q ss_pred ccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc---CCCCce
Q 015534 117 NKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKV 190 (405)
Q Consensus 117 ~~~~~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~ 190 (405)
...+.+|.+|||+|||+|..+..+++. | ..+|+|+|+++ |++.|+++++..+ ++..+..|..... .....+
T Consensus 68 ~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~---~~~~i~~d~~~~~~~~~~~~~v 144 (227)
T d1g8aa_ 68 NFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR---NIVPILGDATKPEEYRALVPKV 144 (227)
T ss_dssp CCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT---TEEEEECCTTCGGGGTTTCCCE
T ss_pred ccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC---CceEEEEECCCcccccccccce
Confidence 356889999999999999999999993 4 56999999999 9999999876553 4777777775433 334789
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
|+|++... +......++..+.++|||||.++.
T Consensus 145 D~i~~d~~-----~~~~~~~~l~~~~~~LkpgG~lvi 176 (227)
T d1g8aa_ 145 DVIFEDVA-----QPTQAKILIDNAEVYLKRGGYGMI 176 (227)
T ss_dssp EEEEECCC-----STTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEEcc-----ccchHHHHHHHHHHhcccCCeEEE
Confidence 99987532 335677889999999999999874
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.35 E-value=1.7e-12 Score=117.39 Aligned_cols=133 Identities=24% Similarity=0.278 Sum_probs=100.4
Q ss_pred hhhHHhhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcE
Q 015534 95 GIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVI 173 (405)
Q Consensus 95 ~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i 173 (405)
......+-+++.++.+.+.+.......+..+|||+|||+|.++..+++.+..+|+|+|+|+ +++.|+++++.+++.+++
T Consensus 83 ~v~~~vlIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~ 162 (271)
T d1nv8a_ 83 LVEEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRF 162 (271)
T ss_dssp ECCTTSCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSE
T ss_pred EEecCccCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCcee
Confidence 3445567778888888877665444445678999999999999999988778999999999 999999999999999999
Q ss_pred EEEEcccccccC-CCCceeEEEEccccccc---------cChhh---------HHHHHHHHHhcccCCcEEEec
Q 015534 174 TVLKGKIEEIEL-PVTKVDIIISEWMGYFL---------LFENM---------LNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 174 ~~~~~d~~~~~~-~~~~~D~Iv~~~~~~~l---------~~~~~---------~~~~l~~~~~~LkpgG~lip~ 228 (405)
.+..+|+.+... ..++||+||||+. |.- .+|+. +.-+.+-+.++|+|||+++..
T Consensus 163 ~i~~~~~~~~~~~~~~~fDlIVsNPP-YI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~E 235 (271)
T d1nv8a_ 163 FVRKGEFLEPFKEKFASIEMILSNPP-YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 235 (271)
T ss_dssp EEEESSTTGGGGGGTTTCCEEEECCC-CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred EEeecccccccccccCcccEEEEccc-ccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEE
Confidence 999999877532 2368999999873 221 11211 122223346889999998754
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.35 E-value=1.4e-12 Score=111.44 Aligned_cols=105 Identities=14% Similarity=0.171 Sum_probs=86.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEE
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIII 194 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv 194 (405)
...|.+|||++||+|.+++.++.+|+++|++||.++ +++.+++++...+..++++++++|+.... ....+||+|+
T Consensus 39 ~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIf 118 (182)
T d2fhpa1 39 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 118 (182)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEE
Confidence 457899999999999999999999999999999999 99999999999998889999999997642 2346899999
Q ss_pred EccccccccChhhHHHHHHHHH--hcccCCcEEEec
Q 015534 195 SEWMGYFLLFENMLNTVLYARD--KWLVDDGIVLPD 228 (405)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~--~~LkpgG~lip~ 228 (405)
+++. |.. .....++..+. .+|+|+|+++.+
T Consensus 119 lDPP-Y~~---~~~~~~l~~i~~~~~L~~~giIi~E 150 (182)
T d2fhpa1 119 LDPP-YAK---QEIVSQLEKMLERQLLTNEAVIVCE 150 (182)
T ss_dssp ECCC-GGG---CCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred echh-hhh---hHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 9984 322 33344555543 579999998854
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=7.5e-13 Score=120.18 Aligned_cols=110 Identities=13% Similarity=0.093 Sum_probs=79.2
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCC--------------------------
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-------------------------- 170 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-------------------------- 170 (405)
.....|.+|||||||+|.++...+..+..+|+|+|+|+ |++.|++.+...+..
T Consensus 50 ~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 129 (263)
T d2g72a1 50 TGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ 129 (263)
T ss_dssp TSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred CCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHH
Confidence 35567899999999999887666654466999999999 999999877543311
Q ss_pred ---CcEEEEEccccccc------CCCCceeEEEEcccccccc-ChhhHHHHHHHHHhcccCCcEEEe
Q 015534 171 ---NVITVLKGKIEEIE------LPVTKVDIIISEWMGYFLL-FENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 171 ---~~i~~~~~d~~~~~------~~~~~~D~Iv~~~~~~~l~-~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
....++..|+..-. .+.++||+|++..+.+++. +...+..+++.+.++|||||.+|.
T Consensus 130 ~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~ 196 (263)
T d2g72a1 130 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLL 196 (263)
T ss_dssp HHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred hhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 01233445554321 2346899999966554443 334678999999999999999885
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.31 E-value=1e-11 Score=107.79 Aligned_cols=76 Identities=30% Similarity=0.338 Sum_probs=67.8
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
.....|++|||+|||+|.+++.++..|+.+|+|+|+++ +++.|++++..++. +.+++.+|...+. ++||+|+++
T Consensus 42 ~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~--~~~~~~~d~~~~~---~~fD~Vi~n 116 (201)
T d1wy7a1 42 LGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFN---SRVDIVIMN 116 (201)
T ss_dssp TTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCC---CCCSEEEEC
T ss_pred cCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC--CceEEECchhhhC---CcCcEEEEc
Confidence 45568899999999999999999999988999999999 99999999988875 4899999987763 789999999
Q ss_pred cc
Q 015534 197 WM 198 (405)
Q Consensus 197 ~~ 198 (405)
+.
T Consensus 117 PP 118 (201)
T d1wy7a1 117 PP 118 (201)
T ss_dssp CC
T ss_pred Cc
Confidence 75
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.31 E-value=6.8e-12 Score=119.45 Aligned_cols=114 Identities=19% Similarity=0.218 Sum_probs=82.5
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcC-------CC-CcEEE-EEcc
Q 015534 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANG-------FS-NVITV-LKGK 179 (405)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~-------~~-~~i~~-~~~d 179 (405)
...|.....+.++.+|||||||+|.+++.+|+ .|.++|+|||+|+ |++.|+++....+ .. ..+.+ +.++
T Consensus 205 i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~ 284 (406)
T d1u2za_ 205 LSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 284 (406)
T ss_dssp HHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeec
Confidence 33445557789999999999999999999887 6778999999999 9999999887532 11 12333 3344
Q ss_pred cccccC---CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 180 IEEIEL---PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 180 ~~~~~~---~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
...... .-..+|+|+++.. + +.+.+...+.++.+.|||||+||..
T Consensus 285 f~~~~~~d~~~~~adVV~inn~---~-f~~~l~~~L~ei~r~LKPGGrIVs~ 332 (406)
T d1u2za_ 285 FVDNNRVAELIPQCDVILVNNF---L-FDEDLNKKVEKILQTAKVGCKIISL 332 (406)
T ss_dssp STTCHHHHHHGGGCSEEEECCT---T-CCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred hhhccccccccccceEEEEecc---c-CchHHHHHHHHHHHhcCCCcEEEEe
Confidence 332211 1246889987532 2 3467788899999999999999854
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.31 E-value=3.3e-12 Score=111.71 Aligned_cols=102 Identities=21% Similarity=0.237 Sum_probs=82.4
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCcee
Q 015534 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (405)
+.+.....++.+|||||||+|.++..+++. | .+|+++|.++ +++.|++++...++ ++++++++|........++||
T Consensus 70 ml~~L~l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~g~-~nv~~~~gd~~~g~~~~~pfD 147 (215)
T d1jg1a_ 70 MLEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGV-KNVHVILGDGSKGFPPKAPYD 147 (215)
T ss_dssp HHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCGGGCCEE
T ss_pred HHHhhccCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHcCC-ceeEEEECccccCCcccCcce
Confidence 344466889999999999999999999984 5 4899999999 99999999999998 469999999988655568999
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
.|++... +. ..+.. +...|+|||+++
T Consensus 148 ~Iiv~~a---~~--~ip~~----l~~qL~~gGrLv 173 (215)
T d1jg1a_ 148 VIIVTAG---AP--KIPEP----LIEQLKIGGKLI 173 (215)
T ss_dssp EEEECSB---BS--SCCHH----HHHTEEEEEEEE
T ss_pred eEEeecc---cc--cCCHH----HHHhcCCCCEEE
Confidence 9998542 21 12223 336789999987
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.30 E-value=2.9e-12 Score=110.26 Aligned_cols=72 Identities=25% Similarity=0.247 Sum_probs=63.4
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEc
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (405)
.....|++|||+|||+|.+++.++..|+.+|+|+|+++ +++.|++++. +++++.+|+.+++ ++||+|+++
T Consensus 44 ~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~------~~~~~~~D~~~l~---~~fD~Vi~N 114 (197)
T d1ne2a_ 44 DGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEIS---GKYDTWIMN 114 (197)
T ss_dssp HTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGCC---CCEEEEEEC
T ss_pred cCCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc------cccEEEEehhhcC---CcceEEEeC
Confidence 34567999999999999999999999998999999999 9999998753 4789999998764 789999999
Q ss_pred cc
Q 015534 197 WM 198 (405)
Q Consensus 197 ~~ 198 (405)
+.
T Consensus 115 PP 116 (197)
T d1ne2a_ 115 PP 116 (197)
T ss_dssp CC
T ss_pred cc
Confidence 74
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=5.9e-12 Score=107.70 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=83.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEEEccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWM 198 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Iv~~~~ 198 (405)
..+.+|||++||+|.+++.++.+|+.+|++||.++ +++.+++++...+.. +++++.+|+..+. ....+||+|++++.
T Consensus 42 ~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~-~~~ii~~d~~~~l~~~~~~fDlIf~DPP 120 (183)
T d2fpoa1 42 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAG-NARVVNSNAMSFLAQKGTPHNIVFVDPP 120 (183)
T ss_dssp HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCHHHHHSSCCCCEEEEEECCS
T ss_pred cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhcccc-ceeeeeecccccccccccccCEEEEcCc
Confidence 46789999999999999999999999999999999 999999999988874 5899999987753 33578999999975
Q ss_pred cccccChhhHHHHHHHHH--hcccCCcEEEec
Q 015534 199 GYFLLFENMLNTVLYARD--KWLVDDGIVLPD 228 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~--~~LkpgG~lip~ 228 (405)
|. ......++..+. .+|+++|+++.+
T Consensus 121 -Y~---~~~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 121 -FR---RGLLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp -SS---TTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred -cc---cchHHHHHHHHHHCCCCCCCeEEEEE
Confidence 32 234445555543 579999998853
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.18 E-value=2.4e-11 Score=106.87 Aligned_cols=99 Identities=16% Similarity=0.165 Sum_probs=76.1
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc-C------CCeEEEEechH-HHHHHHHHHHHcCCC----CcEEEEEcccccccCC
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKA-G------AAHVYAVECSQ-MANMAKQIVEANGFS----NVITVLKGKIEEIELP 186 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~-g------~~~V~~vD~s~-~~~~a~~~~~~~~~~----~~i~~~~~d~~~~~~~ 186 (405)
.+.++.+|||||||+|.++..+++. | ..+|+++|.++ +++.|++++...++. .++.++++|..+...+
T Consensus 77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~ 156 (223)
T d1r18a_ 77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP 156 (223)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccc
Confidence 5678999999999999999888883 2 23899999999 999999887553211 4699999999887666
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
.++||+|++... +.. .+. .+.+.|||||+++
T Consensus 157 ~~~fD~Iiv~~a---~~~--~p~----~l~~~Lk~gG~lV 187 (223)
T d1r18a_ 157 NAPYNAIHVGAA---APD--TPT----ELINQLASGGRLI 187 (223)
T ss_dssp GCSEEEEEECSC---BSS--CCH----HHHHTEEEEEEEE
T ss_pred ccceeeEEEEee---chh--chH----HHHHhcCCCcEEE
Confidence 679999998543 211 112 3457899999986
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.17 E-value=3.4e-11 Score=105.31 Aligned_cols=104 Identities=20% Similarity=0.383 Sum_probs=82.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc------CCCCcee
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTKVD 191 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~~D 191 (405)
.++++|||||||+|..++.+|++ + ..+|+++|.++ +++.|++++...|+.++|+++.+|..+.. ...++||
T Consensus 55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D 134 (214)
T d2cl5a1 55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 134 (214)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccc
Confidence 45679999999999999999984 2 45999999999 99999999999999999999999998752 2346899
Q ss_pred EEEEccccccccChhh-HHHHHHHHHhcccCCcEEEecC
Q 015534 192 IIISEWMGYFLLFENM-LNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~-~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+|+...- +... ....+....++|+|||+|+...
T Consensus 135 ~ifiD~~-----~~~~~~~~~l~~~~~lLkpGGvIv~Dd 168 (214)
T d2cl5a1 135 MVFLDHW-----KDRYLPDTLLLEKCGLLRKGTVLLADN 168 (214)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTTCEEEEEEEEESC
T ss_pred eeeeccc-----ccccccHHHHHHHhCccCCCcEEEEeC
Confidence 9997521 1111 2223555668999999988765
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=1.1e-10 Score=104.57 Aligned_cols=78 Identities=21% Similarity=0.196 Sum_probs=65.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC------CCCceeE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL------PVTKVDI 192 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~------~~~~~D~ 192 (405)
.+..+|||||||+|.+++.+++ .+..+|+|+|+|+ +++.|+++++.+++.+++.+++.+.....+ ..++||+
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 139 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 139 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence 3446999999999999998888 4456999999999 999999999999999999999877654322 2468999
Q ss_pred EEEccc
Q 015534 193 IISEWM 198 (405)
Q Consensus 193 Iv~~~~ 198 (405)
|+|++.
T Consensus 140 ivsNPP 145 (250)
T d2h00a1 140 CMCNPP 145 (250)
T ss_dssp EEECCC
T ss_pred EEecCc
Confidence 999985
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=1.1e-10 Score=102.32 Aligned_cols=103 Identities=17% Similarity=0.093 Sum_probs=85.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc------CCCCcee
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTKVD 191 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~~D 191 (405)
...++|||||||+|..++.+|+. + ..+|+++|.++ ..+.|++++...|+.++++++.+|+.+.. ...++||
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD 137 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 137 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCcc
Confidence 56789999999999999999984 2 45999999999 99999999999999999999999986642 1247899
Q ss_pred EEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+|+.+. ........+..+.++|+|||.++...
T Consensus 138 ~ifiD~------dk~~y~~~~~~~~~lL~~GGvii~Dn 169 (219)
T d2avda1 138 VAVVDA------DKENCSAYYERCLQLLRPGGILAVLR 169 (219)
T ss_dssp EEEECS------CSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEEeC------CHHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 999742 12345667788889999999998654
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.04 E-value=4.6e-10 Score=95.64 Aligned_cols=104 Identities=17% Similarity=0.225 Sum_probs=82.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCC-cEEEEEccccccc---CCCCceeEEEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKIEEIE---LPVTKVDIIIS 195 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~---~~~~~~D~Iv~ 195 (405)
..+.+|||+.||||.+++.++.+|+.+|+.||.+. .++..+++++..+..+ ...++..|..+.. ....+||+|++
T Consensus 42 ~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl 121 (183)
T d2ifta1 42 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 121 (183)
T ss_dssp HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred cccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence 36789999999999999999999999999999999 9999999999988754 5777777765542 22357999999
Q ss_pred ccccccccChhhHHHHHHHHH--hcccCCcEEEec
Q 015534 196 EWMGYFLLFENMLNTVLYARD--KWLVDDGIVLPD 228 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~--~~LkpgG~lip~ 228 (405)
++. |.. .....++..+. .+|+++|.++.+
T Consensus 122 DPP-Y~~---~~~~~~l~~l~~~~~L~~~~liiiE 152 (183)
T d2ifta1 122 DPP-FHF---NLAEQAISLLCENNWLKPNALIYVE 152 (183)
T ss_dssp CCC-SSS---CHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred chh-Hhh---hhHHHHHHHHHHhCCcCCCcEEEEE
Confidence 985 322 34455555553 579999999864
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.02 E-value=2.9e-10 Score=99.93 Aligned_cols=103 Identities=15% Similarity=0.149 Sum_probs=85.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--C-----CCCce
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L-----PVTKV 190 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~-----~~~~~ 190 (405)
...++|||||+++|..++.+|+. + ..+|+.+|.++ .++.|++++.+.|+.++|+++.+++.+.. + ..++|
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f 137 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 137 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence 45679999999999999999983 3 46999999999 99999999999999999999999997652 1 13689
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
|+|+.+. ........+..+.++|+|||.+|...
T Consensus 138 D~iFiDa------~k~~y~~~~e~~~~ll~~gGiii~DN 170 (227)
T d1susa1 138 DFIFVDA------DKDNYLNYHKRLIDLVKVGGVIGYDN 170 (227)
T ss_dssp SEEEECS------CSTTHHHHHHHHHHHBCTTCCEEEET
T ss_pred eEEEecc------chhhhHHHHHHHHhhcCCCcEEEEcc
Confidence 9999753 12345677788889999999999765
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.01 E-value=5.8e-10 Score=95.42 Aligned_cols=106 Identities=18% Similarity=0.227 Sum_probs=84.3
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CCCCce
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTKV 190 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~ 190 (405)
....++.++||++||+|..+..+++ .+..+|+|+|.++ |++.|++++...+ +++.++++++.++. +..++|
T Consensus 19 l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~~~~~~~~~~~v 96 (192)
T d1m6ya2 19 LKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTLGIEKV 96 (192)
T ss_dssp HCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHTTCSCE
T ss_pred hCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHHHHHHHcCCCCc
Confidence 4567899999999999999999988 4567999999999 9999999987765 67999999987753 335799
Q ss_pred eEEEEccccccc-------cChhhHHHHHHHHHhcccCCcEEE
Q 015534 191 DIIISEWMGYFL-------LFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 191 D~Iv~~~~~~~l-------~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
|.|+.+. |..- ..-......+..+.++|+|||.++
T Consensus 97 dgIl~Dl-GvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ 138 (192)
T d1m6ya2 97 DGILMDL-GVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIV 138 (192)
T ss_dssp EEEEEEC-SCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEE
T ss_pred ceeeecc-chhHhhhhhhhccchhHHHHHHHHHHhcCCCCeee
Confidence 9999763 1100 112345677888899999999987
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=3.8e-09 Score=91.11 Aligned_cols=99 Identities=17% Similarity=0.216 Sum_probs=85.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
.++.+|+|||+|.|.-++.+|- .+..+|+.+|.+. -+...++.....++. ++++++.+++++... .+||+|+|..+
T Consensus 64 ~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~~~-~~fD~V~sRA~ 141 (207)
T d1jsxa_ 64 LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFPSE-PPFDGVISRAF 141 (207)
T ss_dssp CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSCCC-SCEEEEECSCS
T ss_pred hcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCc-ceeeeccchhhhccc-cccceehhhhh
Confidence 3567999999999999999998 5567999999999 999999999999995 599999999987543 78999999766
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
..+..++.-+..+++++|.++.-
T Consensus 142 -------~~~~~ll~~~~~~l~~~g~~~~~ 164 (207)
T d1jsxa_ 142 -------ASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp -------SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred -------cCHHHHHHHHHHhcCCCcEEEEE
Confidence 45678888889999999998853
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.83 E-value=1.8e-09 Score=97.73 Aligned_cols=108 Identities=19% Similarity=0.122 Sum_probs=82.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc---------CCCCcEEEEEcccccccCCCCce
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN---------GFSNVITVLKGKIEEIELPVTKV 190 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~---------~~~~~i~~~~~d~~~~~~~~~~~ 190 (405)
.++++||.||+|.|..+..+++.+..+|++||+++ +++.|++.+..+ .-.++++++.+|+..+.-..++|
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y 150 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 150 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence 45679999999999999998887778999999999 999999876432 12368999999997764335789
Q ss_pred eEEEEccccccccCh-hhHHHHHHHHHhcccCCcEEEec
Q 015534 191 DIIISEWMGYFLLFE-NMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~-~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
|+|+++......... -.-..+++.+++.|+|||+++.+
T Consensus 151 DvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q 189 (276)
T d1mjfa_ 151 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 189 (276)
T ss_dssp EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence 999997643211000 01157889999999999998743
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.83 E-value=7e-09 Score=91.48 Aligned_cols=86 Identities=17% Similarity=0.258 Sum_probs=70.8
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (405)
...+.|.+.....++.+|||||||+|.++..+++.+ ++|+|||+++ +++.++++.... ++++++++|+.++.++.
T Consensus 8 ~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~-~~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~D~l~~~~~~ 83 (235)
T d1qama_ 8 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFPK 83 (235)
T ss_dssp HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCCS
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCc-CceEEEeeccchHHHHHHHhhcc---cchhhhhhhhhhccccc
Confidence 345556666777899999999999999999999985 5999999999 999999876543 56999999999988765
Q ss_pred CceeEEEEccc
Q 015534 188 TKVDIIISEWM 198 (405)
Q Consensus 188 ~~~D~Iv~~~~ 198 (405)
.....||++..
T Consensus 84 ~~~~~vv~NLP 94 (235)
T d1qama_ 84 NQSYKIFGNIP 94 (235)
T ss_dssp SCCCEEEEECC
T ss_pred cccceeeeeeh
Confidence 55567788763
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.76 E-value=4.2e-08 Score=83.87 Aligned_cols=108 Identities=16% Similarity=0.133 Sum_probs=71.4
Q ss_pred CCCCEEEEEcCCCcH----HHHHHHHcC-----CCeEEEEechH-HHHHHHHHH--------------H----HcCCC--
Q 015534 121 FKDKVVLDVGAGTGI----LSLFCAKAG-----AAHVYAVECSQ-MANMAKQIV--------------E----ANGFS-- 170 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~----l~~~la~~g-----~~~V~~vD~s~-~~~~a~~~~--------------~----~~~~~-- 170 (405)
.+..+||++|||+|. +++.+.+.+ .-+|+|+|+|+ +++.|++-. . ..+..
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 345699999999996 455555431 12799999999 999997421 1 10100
Q ss_pred ----------CcEEEEEccccccc-CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 171 ----------NVITVLKGKIEEIE-LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 171 ----------~~i~~~~~d~~~~~-~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
..+.+...+..... .+.++||+|+|.-+..++ ..+....++..+++.|+|||.++...
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf-~~~~~~~vl~~l~~~L~pGG~L~lG~ 171 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF-DKTTQEDILRRFVPLLKPDGLLFAGH 171 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS-CHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhc-CHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 12344444443332 234789999996554443 45666889999999999999988643
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.71 E-value=6.1e-08 Score=91.03 Aligned_cols=93 Identities=20% Similarity=0.144 Sum_probs=76.3
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (405)
.+.+.+.+.+.....++.+|||+-||+|.+++.+|+. +++|+|+|.++ +++.|++++..|++. +++|+.++.++...
T Consensus 197 ~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai~~A~~na~~n~i~-n~~~~~~~~~~~~~ 274 (358)
T d1uwva2 197 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVT 274 (358)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCCS
T ss_pred hhHHHHHHHHhhccCCCceEEEecccccccchhcccc-ccEEEeccCcHHHHHHHHHhHHhcccc-cceeeecchhhhhh
Confidence 4455555665566678889999999999999999987 56999999999 999999999999995 59999999877531
Q ss_pred ----CCCceeEEEEcccccc
Q 015534 186 ----PVTKVDIIISEWMGYF 201 (405)
Q Consensus 186 ----~~~~~D~Iv~~~~~~~ 201 (405)
...++|+||.++.-.+
T Consensus 275 ~~~~~~~~~d~vilDPPR~G 294 (358)
T d1uwva2 275 KQPWAKNGFDKVLLDPARAG 294 (358)
T ss_dssp SSGGGTTCCSEEEECCCTTC
T ss_pred hhhhhhccCceEEeCCCCcc
Confidence 2367999999876443
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.71 E-value=1.1e-08 Score=94.11 Aligned_cols=108 Identities=15% Similarity=0.051 Sum_probs=82.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHc--C--CCCcEEEEEccccccc-CCCCceeEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEAN--G--FSNVITVLKGKIEEIE-LPVTKVDII 193 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~--~--~~~~i~~~~~d~~~~~-~~~~~~D~I 193 (405)
...++||.||.|.|..+..+++. +..+|++||+++ +++.|++.+... + -.++++++.+|...+. ...++||+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 35679999999999999999885 467999999999 999999987542 1 1367999999998864 224789999
Q ss_pred EEccccccccCh----hhHHHHHHHHHhcccCCcEEEec
Q 015534 194 ISEWMGYFLLFE----NMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 194 v~~~~~~~l~~~----~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+++......... -.-..+++.+.+.|+|||+++..
T Consensus 156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~ 194 (312)
T d1uira_ 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (312)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence 987643222110 11257889999999999999854
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.69 E-value=9.7e-08 Score=84.56 Aligned_cols=107 Identities=15% Similarity=0.058 Sum_probs=78.8
Q ss_pred HHHHhccC-CCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCc
Q 015534 112 NVIYQNKF-LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (405)
Q Consensus 112 ~~i~~~~~-~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (405)
..+..... .....+|||||||+|.++..+++ .+..+++..|..+.++ ..+..++++++.+|+.+- .| .
T Consensus 70 ~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~-------~~~~~~ri~~~~gd~~~~-~p--~ 139 (244)
T d1fp1d2 70 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIE-------NAPPLSGIEHVGGDMFAS-VP--Q 139 (244)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHT-------TCCCCTTEEEEECCTTTC-CC--C
T ss_pred HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhh-------ccCCCCCeEEecCCcccc-cc--c
Confidence 33444344 34557999999999999999988 5667999999966443 334457899999998753 33 4
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
.|++++..+.+.. ..+....+++.+++.|+|||+++..+
T Consensus 140 ~D~~~l~~vLh~~-~de~~~~iL~~~~~aL~pgg~llI~e 178 (244)
T d1fp1d2 140 GDAMILKAVCHNW-SDEKCIEFLSNCHKALSPNGKVIIVE 178 (244)
T ss_dssp EEEEEEESSGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEEEehhhhhC-CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 5999986554433 33456688999999999999988654
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.69 E-value=6.4e-08 Score=84.88 Aligned_cols=100 Identities=20% Similarity=0.191 Sum_probs=86.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC---CCceeEEEEc
Q 015534 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDIIISE 196 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~Iv~~ 196 (405)
.+.+|+|||+|.|.-++.+|- .+..+|+.+|.+. -+...+......++. ++.+++..++++... .++||+|+|.
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~-n~~i~~~R~E~~~~~~~~~~~~D~v~sR 148 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKDVRESYDIVTAR 148 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCC-CcEEEeehhhhccccccccccceEEEEh
Confidence 567999999999999999997 6778999999999 999999999999995 599999999887532 3689999997
Q ss_pred cccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
.+ ..+..++.-...++++||.++.-.
T Consensus 149 Av-------a~l~~ll~~~~~~l~~~g~~i~~K 174 (239)
T d1xdza_ 149 AV-------ARLSVLSELCLPLVKKNGLFVALK 174 (239)
T ss_dssp CC-------SCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred hh-------hCHHHHHHHHhhhcccCCEEEEEC
Confidence 66 467788899999999999988543
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.68 E-value=1.2e-08 Score=92.59 Aligned_cols=109 Identities=17% Similarity=0.114 Sum_probs=81.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcC--C-CCcEEEEEcccccccC-CCCceeEEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANG--F-SNVITVLKGKIEEIEL-PVTKVDIII 194 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~~-~~~~~D~Iv 194 (405)
...++||-||.|.|..+..+++. +..+|++||+++ +++.|++.+..+. + .++++++.+|...+.. ..++||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 34679999999999999999885 467999999999 9999999876532 1 3689999999987642 247899999
Q ss_pred EccccccccChh--hHHHHHHHHHhcccCCcEEEecC
Q 015534 195 SEWMGYFLLFEN--MLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 195 ~~~~~~~l~~~~--~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
++.......... .-..+++.+++.|+|||+++...
T Consensus 168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~ 204 (295)
T d1inla_ 168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 204 (295)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence 875432110001 12578899999999999988543
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.64 E-value=4.2e-08 Score=91.01 Aligned_cols=112 Identities=17% Similarity=0.131 Sum_probs=79.5
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc----C--CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc
Q 015534 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA----G--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (405)
Q Consensus 112 ~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~----g--~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (405)
..+.......++.+|||.|||+|.+...+.+. + ..+++|+|+++ ++..|+.++...+.. ..+.++|.....
T Consensus 107 ~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~--~~~~~~d~~~~~ 184 (328)
T d2f8la1 107 YLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK--MTLLHQDGLANL 184 (328)
T ss_dssp HHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC--CEEEESCTTSCC
T ss_pred HHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh--hhhhcccccccc
Confidence 33333344567789999999999998888652 1 23799999999 999999998887753 567777765543
Q ss_pred CCCCceeEEEEccccccccCh---------------hhHHHHHHHHHhcccCCcEEE
Q 015534 185 LPVTKVDIIISEWMGYFLLFE---------------NMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~---------------~~~~~~l~~~~~~LkpgG~li 226 (405)
. ..+||+|++++........ .....++..+.++|+|||+++
T Consensus 185 ~-~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~ 240 (328)
T d2f8la1 185 L-VDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLF 240 (328)
T ss_dssp C-CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEE
T ss_pred c-cccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceE
Confidence 3 3799999999752211110 112246777889999999865
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.62 E-value=1.9e-09 Score=95.67 Aligned_cols=85 Identities=22% Similarity=0.348 Sum_probs=69.9
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCcee
Q 015534 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (405)
.|.+.....++.+|||||||+|.++..+++.+ ++|+|||+++ +++.+++++... .+++++++|+.++.++...++
T Consensus 20 kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~-~~v~aIE~D~~l~~~l~~~~~~~---~n~~ii~~D~l~~~~~~~~~~ 95 (245)
T d1yuba_ 20 QIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKLN---TRVTLIHQDILQFQFPNKQRY 95 (245)
T ss_dssp HHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTTC---SEEEECCSCCTTTTCCCSSEE
T ss_pred HHHHhcCCCCCCeEEEECCCccHHHHHHHhhc-CceeEeeecccchhhhhhhhhhc---cchhhhhhhhhccccccceee
Confidence 34444667788999999999999999999985 5999999999 999887765432 579999999999988877888
Q ss_pred EEEEccccccc
Q 015534 192 IIISEWMGYFL 202 (405)
Q Consensus 192 ~Iv~~~~~~~l 202 (405)
.||++.. |.+
T Consensus 96 ~vv~NLP-Y~I 105 (245)
T d1yuba_ 96 KIVGNIP-YHL 105 (245)
T ss_dssp EEEEECC-SSS
T ss_pred eEeeeee-hhh
Confidence 8998864 444
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.60 E-value=5e-08 Score=88.55 Aligned_cols=109 Identities=15% Similarity=0.120 Sum_probs=83.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcC---CCCcEEEEEccccccc--CCCCceeEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANG---FSNVITVLKGKIEEIE--LPVTKVDII 193 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~---~~~~i~~~~~d~~~~~--~~~~~~D~I 193 (405)
...++||-||-|.|..+..+.+. +..+|+.||+++ +++.|++.+..+. -.++++++.+|..... .+.++||+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 35579999999999999999985 567999999999 9999999875422 2368999999987764 334689999
Q ss_pred EEccccccccChh-hHHHHHHHHHhcccCCcEEEecC
Q 015534 194 ISEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 194 v~~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+.+.......... .-..+++.+++.|+|||+++.+.
T Consensus 159 i~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 195 (290)
T d1xj5a_ 159 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 195 (290)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence 9876432211111 12578899999999999998644
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=4.5e-08 Score=88.52 Aligned_cols=108 Identities=19% Similarity=0.163 Sum_probs=80.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcC---CCCcEEEEEccccccc-CCCCceeEEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANG---FSNVITVLKGKIEEIE-LPVTKVDIII 194 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~---~~~~i~~~~~d~~~~~-~~~~~~D~Iv 194 (405)
...++||-||.|.|..+..+.+. +..+|+.||+++ +++.|++.+..+. -..+++++.+|...+. ...++||+|+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 35579999999999999999985 578999999999 9999999875421 1368999999987764 2347899999
Q ss_pred EccccccccChh-hHHHHHHHHHhcccCCcEEEec
Q 015534 195 SEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 195 ~~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~ 228 (405)
++.......... .-..+++.+++.|+|||+++.+
T Consensus 157 ~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 191 (285)
T d2o07a1 157 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ 191 (285)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred EcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence 975432111111 1236788999999999998854
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.56 E-value=6e-08 Score=87.31 Aligned_cols=109 Identities=17% Similarity=0.092 Sum_probs=83.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcC--C-CCcEEEEEccccccc-CCCCceeEEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANG--F-SNVITVLKGKIEEIE-LPVTKVDIII 194 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~-~~~~~~D~Iv 194 (405)
...++||-||.|.|..+..+.+. +.++|+.||+++ +++.|++.+..+. + ..+++++.+|..... ...++||+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 35679999999999999999985 678999999999 9999999875422 1 268999999987754 2347899999
Q ss_pred EccccccccChh-hHHHHHHHHHhcccCCcEEEecC
Q 015534 195 SEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 195 ~~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
.+.......... .-..+++.+.+.|+|||+++...
T Consensus 154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence 975432111111 13578889999999999988543
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=1.4e-07 Score=84.86 Aligned_cols=86 Identities=24% Similarity=0.332 Sum_probs=71.5
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCC
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (405)
..+.|.......++..|||||+|+|.++..+++.+. +|+++|+++ +++..++.+......++++++.+|+....++
T Consensus 9 i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~-- 85 (278)
T d1zq9a1 9 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP-- 85 (278)
T ss_dssp HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--
T ss_pred HHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh--
Confidence 344455556677889999999999999999999864 999999999 9999999988776667899999999888764
Q ss_pred ceeEEEEccc
Q 015534 189 KVDIIISEWM 198 (405)
Q Consensus 189 ~~D~Iv~~~~ 198 (405)
.++.||++..
T Consensus 86 ~~~~vV~NLP 95 (278)
T d1zq9a1 86 FFDTCVANLP 95 (278)
T ss_dssp CCSEEEEECC
T ss_pred hhhhhhcchH
Confidence 4678888864
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.55 E-value=4.2e-08 Score=89.44 Aligned_cols=109 Identities=19% Similarity=0.138 Sum_probs=79.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCC---CCcEEEEEccccccc-CCCCceeEEE
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGF---SNVITVLKGKIEEIE-LPVTKVDIII 194 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~---~~~i~~~~~d~~~~~-~~~~~~D~Iv 194 (405)
...++||-||.|.|..+..+++. +..+|+.||+++ +++.|++.+..+.- .++++++.+|...+. ...++||+|+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 35679999999999999999995 467999999999 99999998754321 268999999998764 2347899999
Q ss_pred EccccccccCh-hhHHHHHHHHHhcccCCcEEEecC
Q 015534 195 SEWMGYFLLFE-NMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 195 ~~~~~~~l~~~-~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
.+......... -.-..+++.+++.|+|||+++.+.
T Consensus 185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~ 220 (312)
T d2b2ca1 185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 220 (312)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence 97543211111 112567889999999999998543
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.44 E-value=3.6e-07 Score=80.81 Aligned_cols=96 Identities=17% Similarity=0.158 Sum_probs=73.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccc
Q 015534 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (405)
...+|||||||+|.++..+++ .+..+++..|..+.++. .+..++++++.+|+.+- . ..+|++++..+.+
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~-------~~~~~rv~~~~gD~f~~-~--p~aD~~~l~~vLH 149 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVEN-------LSGSNNLTYVGGDMFTS-I--PNADAVLLKYILH 149 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTT-------CCCBTTEEEEECCTTTC-C--CCCSEEEEESCGG
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHh-------CcccCceEEEecCcccC-C--CCCcEEEEEeecc
Confidence 346899999999999999988 56679999999665433 34558899999999763 2 4689999866544
Q ss_pred cccChhhHHHHHHHHHhcccCC---cEEEec
Q 015534 201 FLLFENMLNTVLYARDKWLVDD---GIVLPD 228 (405)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~Lkpg---G~lip~ 228 (405)
.. .......+++.+++.|+|| |+++..
T Consensus 150 dw-~d~~~~~iL~~~~~al~pgg~~~~lli~ 179 (244)
T d1fp2a2 150 NW-TDKDCLRILKKCKEAVTNDGKRGKVTII 179 (244)
T ss_dssp GS-CHHHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred cC-ChHHHHHHHHHHHHHcCcccCCcEEEEE
Confidence 33 3445568899999999998 666643
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.42 E-value=2.4e-07 Score=86.93 Aligned_cols=100 Identities=20% Similarity=0.117 Sum_probs=79.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCC--------------cEEEEEcccccccC
Q 015534 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSN--------------VITVLKGKIEEIEL 185 (405)
Q Consensus 122 ~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~--------------~i~~~~~d~~~~~~ 185 (405)
.+.+|||..||+|..++..+. .|+.+|+++|+|+ .++.++++++.|+..+ .+.+.+.|+..+..
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 578999999999999997665 7888999999999 9999999999998643 36677777655432
Q ss_pred -CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 186 -PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 186 -~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
..+.||+|..++++ ....+++...+.++.||.+...
T Consensus 125 ~~~~~fDvIDiDPfG-------s~~pfldsAi~a~~~~Gll~vT 161 (375)
T d2dula1 125 ERHRYFHFIDLDPFG-------SPMEFLDTALRSAKRRGILGVT 161 (375)
T ss_dssp HSTTCEEEEEECCSS-------CCHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcCcCCcccCCCCC-------CcHHHHHHHHHHhccCCEEEEE
Confidence 23679999998863 2345777777889999998753
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.39 E-value=4.1e-07 Score=78.94 Aligned_cols=105 Identities=12% Similarity=0.026 Sum_probs=73.2
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH-c-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC
Q 015534 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-A-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (405)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (405)
.+.+.......++.+|||.|||+|.+...+.+ . ....++|+|+++ .+..+ .+..++++|.......
T Consensus 8 ~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~----------~~~~~~~~~~~~~~~~- 76 (223)
T d2ih2a1 8 VDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLLWEPG- 76 (223)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGGCCCS-
T ss_pred HHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc----------ccceeeeeehhccccc-
Confidence 34445555667889999999999998887776 2 346899999999 65432 3367888888776544
Q ss_pred CceeEEEEccccccccC--------------------------hhhHHHHHHHHHhcccCCcEEE
Q 015534 188 TKVDIIISEWMGYFLLF--------------------------ENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~--------------------------~~~~~~~l~~~~~~LkpgG~li 226 (405)
.+||+|++++....... ......++....++|+|||++.
T Consensus 77 ~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~ 141 (223)
T d2ih2a1 77 EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLV 141 (223)
T ss_dssp SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEE
T ss_pred cccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceE
Confidence 89999999864221100 0012345667778999999975
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.33 E-value=9.3e-07 Score=80.98 Aligned_cols=113 Identities=15% Similarity=0.081 Sum_probs=86.4
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 194 (405)
....+|.+|||+.||.|.=+..++.. +...++++|.++ -+..+++++.+.++.+ +.+...|...+......||.|+
T Consensus 112 l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~-i~~~~~d~~~~~~~~~~fD~IL 190 (313)
T d1ixka_ 112 LDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN-VILFHSSSLHIGELNVEFDKIL 190 (313)
T ss_dssp HCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS-EEEESSCGGGGGGGCCCEEEEE
T ss_pred ccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhc-cccccccccccccccccccEEE
Confidence 34678999999999999988888873 345899999999 9999999999999854 7788888877765558899999
Q ss_pred Eccccccc--c----------Chhh-------HHHHHHHHHhcccCCcEEEecCce
Q 015534 195 SEWMGYFL--L----------FENM-------LNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 195 ~~~~~~~l--~----------~~~~-------~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
.+..-... . .... ...++....++|||||.+|-++++
T Consensus 191 vDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCS 246 (313)
T d1ixka_ 191 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 246 (313)
T ss_dssp EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred EccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeecc
Confidence 85422211 0 1111 136677788999999999976655
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.32 E-value=9.5e-07 Score=79.82 Aligned_cols=113 Identities=14% Similarity=0.015 Sum_probs=81.9
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-CCCCceeEEE
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIII 194 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Iv 194 (405)
....++.+|||+++|.|.=+..+++.+ ...|+|+|+++ -+..+++++++.|+.. +.+...|..... ...+.||.|+
T Consensus 98 L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~-~~~~~~~~~~~~~~~~~~fd~IL 176 (284)
T d1sqga2 98 LAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKA-TVKQGDGRYPSQWCGEQQFDRIL 176 (284)
T ss_dssp HCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCC-EEEECCTTCTHHHHTTCCEEEEE
T ss_pred cCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccc-eeeeccccccchhcccccccEEE
Confidence 346789999999999999999988853 36899999999 9999999999999864 444444433222 2237899999
Q ss_pred Eccccccc----cCh--------hh-------HHHHHHHHHhcccCCcEEEecCce
Q 015534 195 SEWMGYFL----LFE--------NM-------LNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 195 ~~~~~~~l----~~~--------~~-------~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
.+..-... .++ .. ...++..+.++|||||+++-++++
T Consensus 177 ~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS 232 (284)
T d1sqga2 177 LDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 232 (284)
T ss_dssp EECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred EeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeec
Confidence 86422111 111 11 246778888999999999976655
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.30 E-value=1.7e-06 Score=76.29 Aligned_cols=98 Identities=17% Similarity=0.154 Sum_probs=71.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (405)
....+|||||||+|.++..+++ .+..+++..|..+.++. ....++++++.+|+.+- .| ..|+++...+.
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~-------~~~~~r~~~~~~d~~~~-~P--~ad~~~l~~vl 149 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIED-------APSYPGVEHVGGDMFVS-IP--KADAVFMKWIC 149 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTT-------CCCCTTEEEEECCTTTC-CC--CCSCEECSSSS
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhh-------cccCCceEEeccccccc-CC--CcceEEEEEEe
Confidence 3357899999999999999999 56679999999774332 23347899999999653 34 35666654332
Q ss_pred ccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
+. ........+++.+.+.|+|||+++...
T Consensus 150 h~-~~d~~~~~iL~~~~~al~pgg~~li~d 178 (243)
T d1kyza2 150 HD-WSDEHCLKFLKNCYEALPDNGKVIVAE 178 (243)
T ss_dssp TT-SCHHHHHHHHHHHHHHCCSSSCEEEEE
T ss_pred ec-CCHHHHHHHHHHHHHhcCCCceEEEEE
Confidence 22 234566789999999999999987544
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=6.2e-06 Score=74.63 Aligned_cols=79 Identities=13% Similarity=0.101 Sum_probs=66.0
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC---CCceeE
Q 015534 119 FLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDI 192 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G~l~~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~ 192 (405)
...+|.+|||++||.|.-+..++.. +..+|+|+|+++ -++.+++++.+.|+. ++.+...|...+... .++||.
T Consensus 91 ~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~-~~~~~~~d~~~~~~~~~~~~~fD~ 169 (293)
T d2b9ea1 91 DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSDPRYHEVHY 169 (293)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTCGGGTTEEE
T ss_pred CCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcc-ceeeeehhhhhhcccccccceeeE
Confidence 4578999999999999988888773 456999999999 999999999999995 599999998876532 257999
Q ss_pred EEEccc
Q 015534 193 IISEWM 198 (405)
Q Consensus 193 Iv~~~~ 198 (405)
|+.+..
T Consensus 170 VL~DaP 175 (293)
T d2b9ea1 170 ILLDPS 175 (293)
T ss_dssp EEECCC
T ss_pred EeecCc
Confidence 998653
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.22 E-value=2.8e-06 Score=71.21 Aligned_cols=103 Identities=20% Similarity=0.214 Sum_probs=78.1
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CCCCcee
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTKVD 191 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~D 191 (405)
....+|..++|..+|.|..+..+.+.+ .+|+|+|.++ ++..|++. ..+++.+++++..++. ...+.+|
T Consensus 14 l~~~~g~~~vD~T~G~GGhs~~iL~~~-~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~~~~l~~~~~~~vd 87 (182)
T d1wg8a2 14 LAVRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHLKRHLAALGVERVD 87 (182)
T ss_dssp HTCCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGHHHHHHHTTCSCEE
T ss_pred cCCCCCCEEEEeCCCCcHHHHHHhccc-CcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHHHHHHHHcCCCccC
Confidence 446789999999999999999999975 4999999999 99988764 2257999999987764 2347899
Q ss_pred EEEEccccccccC-------hhhHHHHHHHHHhcccCCcEEEe
Q 015534 192 IIISEWMGYFLLF-------ENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 192 ~Iv~~~~~~~l~~-------~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.|+.++ |....+ -..+...+.....+|+|||.++.
T Consensus 88 gIl~DL-GvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~i 129 (182)
T d1wg8a2 88 GILADL-GVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVV 129 (182)
T ss_dssp EEEEEC-SCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEc-cCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEE
Confidence 999864 211110 01234567778899999999773
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.22 E-value=4.4e-06 Score=69.93 Aligned_cols=98 Identities=18% Similarity=0.248 Sum_probs=70.4
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHH-c-CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEccccccc--------CCC
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAK-A-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------LPV 187 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~-~-g~~~V~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~ 187 (405)
.-..++.+||||||+.|.++..+++ . ....|+++|+.+| ..+ +.+.++.+|+.+.. ...
T Consensus 18 ~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----------~~i-~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (180)
T d1ej0a_ 18 KLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----------DPI-VGVDFLQGDFRDELVMKALLERVGD 86 (180)
T ss_dssp CCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----------CCC-TTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred CccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----------ccc-CCceEeecccccchhhhhhhhhccC
Confidence 3457889999999999999999987 3 3568999999772 123 45899999987643 234
Q ss_pred CceeEEEEccccccccCh--------hhHHHHHHHHHhcccCCcEEE
Q 015534 188 TKVDIIISEWMGYFLLFE--------NMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~--------~~~~~~l~~~~~~LkpgG~li 226 (405)
.++|+|+|++....-.+. ......+..+.++|++||.+|
T Consensus 87 ~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV 133 (180)
T d1ej0a_ 87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFV 133 (180)
T ss_dssp CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred cceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEE
Confidence 789999998654432111 112344555679999999988
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.18 E-value=5.5e-07 Score=79.72 Aligned_cols=82 Identities=10% Similarity=0.082 Sum_probs=62.2
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCC---
Q 015534 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV--- 187 (405)
Q Consensus 112 ~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~--- 187 (405)
+.|.......++..|||||||+|.++..+++.+ ++|+|+|+++ +++.+++..... ++++++.+|+..+.++.
T Consensus 11 ~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~~~---~~~~ii~~D~l~~~~~~~~~ 86 (252)
T d1qyra_ 11 DSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp HHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCHHHHHH
T ss_pred HHHHHhcCCCCCCEEEEECCCchHHHHHHHccC-CceEEEEeccchhHHHHHHhhhc---cchhHHhhhhhhhccccccc
Confidence 334444456788899999999999999999985 5999999999 999988754332 57999999998875431
Q ss_pred --CceeEEEEcc
Q 015534 188 --TKVDIIISEW 197 (405)
Q Consensus 188 --~~~D~Iv~~~ 197 (405)
+..-.|+++.
T Consensus 87 ~~~~~~~vvgNl 98 (252)
T d1qyra_ 87 KMGQPLRVFGNL 98 (252)
T ss_dssp HHTSCEEEEEEC
T ss_pred ccCCCeEEEecc
Confidence 2223666765
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.00 E-value=7.8e-06 Score=78.05 Aligned_cols=115 Identities=17% Similarity=0.022 Sum_probs=82.2
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC--------------CCeEEEEechH-HHHHHHHHHHHcCCC-CcE
Q 015534 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG--------------AAHVYAVECSQ-MANMAKQIVEANGFS-NVI 173 (405)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g--------------~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i 173 (405)
..+.+.......++.+|+|..||+|.+...+.+.- ...++|+|+++ +...|+.++.-.+.. ...
T Consensus 150 Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~ 229 (425)
T d2okca1 150 LIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS 229 (425)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred hhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccc
Confidence 33444444555678899999999999988887731 12599999999 999999988887764 335
Q ss_pred EEEEcccccccCCCCceeEEEEccccccccC---------------hhhHHHHHHHHHhcccCCcEEE
Q 015534 174 TVLKGKIEEIELPVTKVDIIISEWMGYFLLF---------------ENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 174 ~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~---------------~~~~~~~l~~~~~~LkpgG~li 226 (405)
.+..+|...... ..+||+|++++.. .... ...-..++..+.++|++||++.
T Consensus 230 ~i~~~d~l~~~~-~~~fD~Ii~NPPf-g~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~ 295 (425)
T d2okca1 230 PIVCEDSLEKEP-STLVDVILANPPF-GTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAA 295 (425)
T ss_dssp SEEECCTTTSCC-SSCEEEEEECCCS-SCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred eeecCchhhhhc-ccccceEEecCCC-CCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEE
Confidence 677777765543 4789999999753 2111 0112357888889999999865
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.98 E-value=9.6e-06 Score=70.56 Aligned_cols=116 Identities=15% Similarity=0.226 Sum_probs=75.8
Q ss_pred hhcCHHhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH----cC-CCeEEEEechH-HHHHHHHHHHHcCCCCcE
Q 015534 100 MLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK----AG-AAHVYAVECSQ-MANMAKQIVEANGFSNVI 173 (405)
Q Consensus 100 ~l~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~----~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i 173 (405)
+++.+.....|.+.|.+ .++++|||||++.|..+.+++. .+ ..+|+++|+.+ ....+.. ..+++
T Consensus 62 ~~k~p~d~~~~~eli~~----~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~------~~~~I 131 (232)
T d2bm8a1 62 MLKDPDTQAVYHDMLWE----LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENI 131 (232)
T ss_dssp CCSCHHHHHHHHHHHHH----HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTE
T ss_pred cccCHHHHHHHHHHHHH----hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc------cccce
Confidence 55555555566555554 3567999999999987777664 22 46999999987 5433221 12579
Q ss_pred EEEEccccccc----CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCc
Q 015534 174 TVLKGKIEEIE----LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (405)
Q Consensus 174 ~~~~~d~~~~~----~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (405)
+++.+|..+.. +....+|+|+.+.- ..++..+..+ ....+|+|||++|..+.
T Consensus 132 ~~i~gDs~~~~~~~~l~~~~~dlIfID~~---H~~~~v~~~~--~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 132 TLHQGDCSDLTTFEHLREMAHPLIFIDNA---HANTFNIMKW--AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp EEEECCSSCSGGGGGGSSSCSSEEEEESS---CSSHHHHHHH--HHHHTCCTTCEEEECSC
T ss_pred eeeecccccHHHHHHHHhcCCCEEEEcCC---cchHHHHHHH--HHhcccCcCCEEEEEcC
Confidence 99999986543 22356888887532 2233333332 34589999999998763
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.97 E-value=1.1e-05 Score=70.50 Aligned_cols=90 Identities=12% Similarity=0.036 Sum_probs=66.0
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcC--------CCCcEEEEE
Q 015534 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANG--------FSNVITVLK 177 (405)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~--------~~~~i~~~~ 177 (405)
.+.+.+++. .......+|||+-||.|..++.+|..|+ +|+++|.++ +....++.+.... +..++++++
T Consensus 75 ~~~l~kA~g--l~~~~~~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~ 151 (250)
T d2oyra1 75 GEAVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_dssp GSHHHHHTT--CBTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEE
T ss_pred hhHHHHHhc--CCCCCCCEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeec
Confidence 344555543 1222334899999999999999999986 899999999 8777776554432 124799999
Q ss_pred cccccccC-CCCceeEEEEcccc
Q 015534 178 GKIEEIEL-PVTKVDIIISEWMG 199 (405)
Q Consensus 178 ~d~~~~~~-~~~~~D~Iv~~~~~ 199 (405)
+|..++.. ....||+|+.++|.
T Consensus 152 ~Ds~~~L~~~~~~~DvIYlDPMF 174 (250)
T d2oyra1 152 ASSLTALTDITPRPQVVYLDPMF 174 (250)
T ss_dssp SCHHHHSTTCSSCCSEEEECCCC
T ss_pred CcHHHHHhccCCCCCEEEECCCC
Confidence 99877642 24679999999874
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.65 E-value=4.4e-05 Score=65.99 Aligned_cols=108 Identities=16% Similarity=0.228 Sum_probs=63.3
Q ss_pred hccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEE
Q 015534 116 QNKFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193 (405)
Q Consensus 116 ~~~~~~~~~~VLDiGcG~G~l~~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~I 193 (405)
+.....++.+|+|||||.|.++..++... ...|.|+++-- ..+. -......+. +.+++...+.... ++.+.+|+|
T Consensus 60 ~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~-P~~~~~~~~-ni~~~~~~~dv~~-l~~~~~D~v 136 (257)
T d2p41a1 60 ERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE-PIPMSTYGW-NLVRLQSGVDVFF-IPPERCDTL 136 (257)
T ss_dssp HTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCSTTG-GGEEEECSCCTTT-SCCCCCSEE
T ss_pred HhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccC-Ccccccccc-ccccchhhhhHHh-cCCCcCCEE
Confidence 33456778899999999999999999853 34777877731 1000 000011111 2345444333222 345899999
Q ss_pred EEccccccccCh---hhHHHHHHHHHhcccCCcEEE
Q 015534 194 ISEWMGYFLLFE---NMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 194 v~~~~~~~l~~~---~~~~~~l~~~~~~LkpgG~li 226 (405)
+|++.......+ ...-.++..+.++|+|||.++
T Consensus 137 lcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~Fv 172 (257)
T d2p41a1 137 LCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFC 172 (257)
T ss_dssp EECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEE
T ss_pred EeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEE
Confidence 998633211110 112256677789999999876
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.43 E-value=6.8e-05 Score=62.50 Aligned_cols=100 Identities=24% Similarity=0.309 Sum_probs=65.5
Q ss_pred HHHHhccCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEc---ccccc--
Q 015534 112 NVIYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG---KIEEI-- 183 (405)
Q Consensus 112 ~~i~~~~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~---d~~~~-- 183 (405)
.++.+.....+|.+||-+|||. |.++..+++ .|+++|+++|.++ -++.|++. |.. .++.. +..+.
T Consensus 18 ~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~~ 90 (182)
T d1vj0a2 18 HAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GAD---LTLNRRETSVEERRK 90 (182)
T ss_dssp HHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TCS---EEEETTTSCHHHHHH
T ss_pred HHHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc----cce---EEEeccccchHHHHH
Confidence 3445545678899999999986 788888888 7888999999999 88888753 321 22222 11111
Q ss_pred ---c-CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 184 ---E-LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 184 ---~-~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
. .....+|+|+-.. + .+ ..+....++|+|||+++.
T Consensus 91 ~i~~~~~~~g~Dvvid~v-G----~~----~~~~~a~~~l~~~G~iv~ 129 (182)
T d1vj0a2 91 AIMDITHGRGADFILEAT-G----DS----RALLEGSELLRRGGFYSV 129 (182)
T ss_dssp HHHHHTTTSCEEEEEECS-S----CT----THHHHHHHHEEEEEEEEE
T ss_pred HHHHhhCCCCceEEeecC-C----ch----hHHHHHHHHhcCCCEEEE
Confidence 0 1235699998521 1 11 234555588999999864
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.42 E-value=0.0003 Score=58.01 Aligned_cols=98 Identities=22% Similarity=0.248 Sum_probs=66.3
Q ss_pred HHhccCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----C
Q 015534 114 IYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L 185 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~ 185 (405)
+.......++.+||-+|||. |.++..+++ .|+.+|+++|.++ -++.|++. |. .+++..+-.+.. +
T Consensus 20 ~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga---~~~i~~~~~~~~~~i~~~ 92 (174)
T d1f8fa2 20 CINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GA---THVINSKTQDPVAAIKEI 92 (174)
T ss_dssp HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TC---SEEEETTTSCHHHHHHHH
T ss_pred HHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CC---eEEEeCCCcCHHHHHHHH
Confidence 34445678999999999986 566777776 7888999999999 88888764 33 234433322221 2
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.++.+|+|+-.. + . +..+....++++|+|+++.
T Consensus 93 t~gg~D~vid~~-G----~----~~~~~~~~~~~~~~G~i~~ 125 (174)
T d1f8fa2 93 TDGGVNFALEST-G----S----PEILKQGVDALGILGKIAV 125 (174)
T ss_dssp TTSCEEEEEECS-C----C----HHHHHHHHHTEEEEEEEEE
T ss_pred cCCCCcEEEEcC-C----c----HHHHHHHHhcccCceEEEE
Confidence 236899998521 1 1 2345566689999999874
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.40 E-value=0.00015 Score=61.18 Aligned_cols=102 Identities=22% Similarity=0.104 Sum_probs=67.5
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc------CCCC
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVT 188 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~ 188 (405)
....+|.+||.+|||. |.++..+++ .|+.+|+++|.++ -++.|++. |. ..++...-.++. ....
T Consensus 21 a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga---~~~~~~~~~~~~~~i~~~t~g~ 93 (195)
T d1kola2 21 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GF---EIADLSLDTPLHEQIAALLGEP 93 (195)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TC---EEEETTSSSCHHHHHHHHHSSS
T ss_pred hCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----cc---cEEEeCCCcCHHHHHHHHhCCC
Confidence 5778999999999998 677777777 7888999999999 88888764 32 222221111110 1235
Q ss_pred ceeEEEEccccc-------cccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 189 KVDIIISEWMGY-------FLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 189 ~~D~Iv~~~~~~-------~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.+|+++-.. +. ...........++...++++|||+++.
T Consensus 94 g~D~vid~v-G~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~ 138 (195)
T d1kola2 94 EVDCAVDAV-GFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGI 138 (195)
T ss_dssp CEEEEEECC-CTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEE
T ss_pred CcEEEEECc-cccccCCcccceeecCcHHHHHHHHHHHhcCCEEEE
Confidence 799998521 10 000111234567888899999999874
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.31 E-value=0.00017 Score=59.65 Aligned_cols=95 Identities=25% Similarity=0.247 Sum_probs=64.4
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc------CCCC
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVT 188 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~ 188 (405)
....+|.+||-+|||. |.++..+++ .|+.+|+++|.++ -++.|++. |.. .++...-.++. ....
T Consensus 23 a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l----Ga~---~~i~~~~~~~~~~v~~~t~g~ 95 (174)
T d1jqba2 23 ADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY----GAT---DILNYKNGHIEDQVMKLTNGK 95 (174)
T ss_dssp TTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH----TCS---EEECGGGSCHHHHHHHHTTTS
T ss_pred hCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh----Ccc---ccccccchhHHHHHHHHhhcc
Confidence 5678999999999997 888888988 6788999999999 88888753 321 23322211111 1235
Q ss_pred ceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.+|+|+-.. + .. ..+....++++|+|.++.-
T Consensus 96 G~D~vid~~-g----~~----~~~~~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 96 GVDRVIMAG-G----GS----ETLSQAVKMVKPGGIISNI 126 (174)
T ss_dssp CEEEEEECS-S----CT----THHHHHHHHEEEEEEEEEC
T ss_pred CcceEEEcc-C----CH----HHHHHHHHHHhcCCEEEEE
Confidence 699988532 1 11 2344555889999998753
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.31 E-value=0.00018 Score=70.12 Aligned_cols=116 Identities=13% Similarity=-0.060 Sum_probs=74.6
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc----C---------------CCeEEEEechH-HHHHHHHHHHHcCCC
Q 015534 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA----G---------------AAHVYAVECSQ-MANMAKQIVEANGFS 170 (405)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~----g---------------~~~V~~vD~s~-~~~~a~~~~~~~~~~ 170 (405)
.+.|.......++.+|+|-.||+|.+...+.++ . ...++|+|+++ +..+|+-++.-.+..
T Consensus 153 v~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~ 232 (524)
T d2ar0a1 153 IKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE 232 (524)
T ss_dssp HHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC
T ss_pred hHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhccc
Confidence 344444455677889999999999998877662 1 12589999999 999999888776653
Q ss_pred Cc----EEEEEccccccc-CCCCceeEEEEcccccccc----------Ch-hhHHHHHHHHHhcccCCcEEE
Q 015534 171 NV----ITVLKGKIEEIE-LPVTKVDIIISEWMGYFLL----------FE-NMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 171 ~~----i~~~~~d~~~~~-~~~~~~D~Iv~~~~~~~l~----------~~-~~~~~~l~~~~~~LkpgG~li 226 (405)
.. -.+..++..... ....+||+|++++....-. .. ..--.++..+.+.|+|||++.
T Consensus 233 ~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~a 304 (524)
T d2ar0a1 233 GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAA 304 (524)
T ss_dssp CBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEE
Confidence 21 122233322111 1236899999997421110 00 111247888889999999865
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.29 E-value=0.00022 Score=64.97 Aligned_cols=80 Identities=15% Similarity=0.074 Sum_probs=58.3
Q ss_pred hhcCHHhHHHHHHHHHhc--cCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEE
Q 015534 100 MLKDVVRTKSYQNVIYQN--KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITV 175 (405)
Q Consensus 100 ~l~d~~r~~~~~~~i~~~--~~~~~~~~VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~ 175 (405)
++.|..-.+...+.+.-. .....+..|||||+|.|.++..+.+. ++++|+++|+++ +++..++.+.. +++++
T Consensus 19 fL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~----~~~~i 94 (322)
T d1i4wa_ 19 YLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG----SPLQI 94 (322)
T ss_dssp CBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT----SSCEE
T ss_pred ccCCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccC----CCcEE
Confidence 455554444555544211 12235679999999999999999986 467999999999 99998877542 56899
Q ss_pred EEcccccc
Q 015534 176 LKGKIEEI 183 (405)
Q Consensus 176 ~~~d~~~~ 183 (405)
+++|+..+
T Consensus 95 i~~D~l~~ 102 (322)
T d1i4wa_ 95 LKRDPYDW 102 (322)
T ss_dssp ECSCTTCH
T ss_pred EeCchhhc
Confidence 99998654
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=97.25 E-value=0.00055 Score=56.39 Aligned_cols=98 Identities=19% Similarity=0.170 Sum_probs=66.7
Q ss_pred HhccCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-------
Q 015534 115 YQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------- 184 (405)
Q Consensus 115 ~~~~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------- 184 (405)
.+.....+|.+||-+|||. |.++..+++ .|+.+|+++|.++ -++.|++. |.. .++.....+..
T Consensus 21 ~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~----Ga~---~~i~~~~~~~~~~~~~~~ 93 (174)
T d1e3ia2 21 INTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----GAT---DCLNPRELDKPVQDVITE 93 (174)
T ss_dssp HTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS---EEECGGGCSSCHHHHHHH
T ss_pred HHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh----CCC---cccCCccchhhhhhhHhh
Confidence 3446678999999999998 888999998 7888999999999 88887764 432 22322111110
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCC-cEEEec
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVLPD 228 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lip~ 228 (405)
...+.+|+++-.. +. +..+....+.+++| |.++.-
T Consensus 94 ~~~~G~d~vie~~--------G~-~~~~~~a~~~~~~g~G~~v~v 129 (174)
T d1e3ia2 94 LTAGGVDYSLDCA--------GT-AQTLKAAVDCTVLGWGSCTVV 129 (174)
T ss_dssp HHTSCBSEEEESS--------CC-HHHHHHHHHTBCTTTCEEEEC
T ss_pred hhcCCCcEEEEec--------cc-chHHHHHHHHhhcCCeEEEec
Confidence 1236799998521 11 34456666889996 888743
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=97.19 E-value=0.0012 Score=54.21 Aligned_cols=98 Identities=17% Similarity=0.173 Sum_probs=61.8
Q ss_pred HhccCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-------
Q 015534 115 YQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------- 184 (405)
Q Consensus 115 ~~~~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------- 184 (405)
.+.....+|.+||-+|||. |.++..+++ .|+.+|+++|.++ -++.|++. |.. .++...-.+..
T Consensus 20 ~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l----Ga~---~~i~~~~~d~~~~~~~~~ 92 (174)
T d1p0fa2 20 VNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL----GAT---ECLNPKDYDKPIYEVICE 92 (174)
T ss_dssp HTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT----TCS---EEECGGGCSSCHHHHHHH
T ss_pred HHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc----CCc---EEEcCCCchhHHHHHHHH
Confidence 3445688999999999997 566777777 7888999999999 99888763 432 23322111110
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
...+.+|+|+-.. .....+...+..+++++|.++.
T Consensus 93 ~~~~G~d~vid~~--------g~~~~~~~~~~~~~~~~G~~v~ 127 (174)
T d1p0fa2 93 KTNGGVDYAVECA--------GRIETMMNALQSTYCGSGVTVV 127 (174)
T ss_dssp HTTSCBSEEEECS--------CCHHHHHHHHHTBCTTTCEEEE
T ss_pred hcCCCCcEEEEcC--------CCchHHHHHHHHHHHhcCceEE
Confidence 1235799988532 1223333444445566788764
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.13 E-value=0.00064 Score=55.64 Aligned_cols=95 Identities=27% Similarity=0.229 Sum_probs=63.5
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--------CC
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--------LP 186 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~ 186 (405)
....++.+||-+|||. |.++..+++ .|+.+|+++|.++ -++.|++. |.. .++..+-.+.. ..
T Consensus 22 ~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~----Ga~---~~~~~~~~~~~~~~~~~~~~~ 94 (171)
T d1pl8a2 22 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GAD---LVLQISKESPQEIARKVEGQL 94 (171)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCS---EEEECSSCCHHHHHHHHHHHH
T ss_pred hCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh----CCc---ccccccccccccccccccccC
Confidence 4567899999999987 577777777 6888999999999 88888764 432 22222211110 01
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
...+|+|+-.. + . +..+....+++++||+++..
T Consensus 95 g~g~Dvvid~~-G----~----~~~~~~a~~~~~~gG~iv~~ 127 (171)
T d1pl8a2 95 GCKPEVTIECT-G----A----EASIQAGIYATRSGGTLVLV 127 (171)
T ss_dssp TSCCSEEEECS-C----C----HHHHHHHHHHSCTTCEEEEC
T ss_pred CCCceEEEecc-C----C----chhHHHHHHHhcCCCEEEEE
Confidence 25789988522 1 1 23456666889999998753
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=97.11 E-value=0.0014 Score=54.00 Aligned_cols=99 Identities=13% Similarity=0.159 Sum_probs=63.4
Q ss_pred HHhccCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEE-cccccc-----c
Q 015534 114 IYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK-GKIEEI-----E 184 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~-~d~~~~-----~ 184 (405)
+.+.....+|.+||-+|||. |.++..+++ .|+++|+++|.++ -++.|++.-.. .++. .+.... .
T Consensus 21 v~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~-------~~in~~~~~~~~~~~~~ 93 (176)
T d1d1ta2 21 AVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGAT-------ECISPKDSTKPISEVLS 93 (176)
T ss_dssp HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCS-------EEECGGGCSSCHHHHHH
T ss_pred HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCc-------EEECccccchHHHHHHH
Confidence 44445678999999999987 566777777 7888999999999 99999876321 2222 111110 0
Q ss_pred -CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 185 -~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.....+|+++-.. .....+...+..+++++|+++.
T Consensus 94 ~~~g~G~d~vi~~~--------g~~~~~~~a~~~~~~~~G~~v~ 129 (176)
T d1d1ta2 94 EMTGNNVGYTFEVI--------GHLETMIDALASCHMNYGTSVV 129 (176)
T ss_dssp HHHTSCCCEEEECS--------CCHHHHHHHHTTSCTTTCEEEE
T ss_pred HhccccceEEEEeC--------CchHHHHHHHHHhhcCCeEEEE
Confidence 1236799887532 2233444455556667688764
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.92 E-value=0.0014 Score=53.59 Aligned_cols=97 Identities=22% Similarity=0.234 Sum_probs=63.4
Q ss_pred HHhccCCCCCCEEEEEcC--CCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----
Q 015534 114 IYQNKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----- 184 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----- 184 (405)
|.......+|.+||-.|+ |.|.++..+++ .|+ +|++++.++ -.+.+++ .|.. .++...-.++.
T Consensus 20 l~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~----~Ga~---~vi~~~~~~~~~~i~~ 91 (174)
T d1yb5a2 20 LIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQ----NGAH---EVFNHREVNYIDKIKK 91 (174)
T ss_dssp HHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS---EEEETTSTTHHHHHHH
T ss_pred HHHHhCCCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccc----cCcc---cccccccccHHHHhhh
Confidence 444456789999999997 34788888888 566 899999888 7777664 4542 23322111110
Q ss_pred -CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 185 -~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.....+|+|+... . ...+....++|+|+|+++..
T Consensus 92 ~t~~~g~d~v~d~~--------g--~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 92 YVGEKGIDIIIEML--------A--NVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp HHCTTCEEEEEESC--------H--HHHHHHHHHHEEEEEEEEEC
T ss_pred hhccCCceEEeecc--------c--HHHHHHHHhccCCCCEEEEE
Confidence 2246799999632 1 12455566889999998853
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.85 E-value=0.0023 Score=52.22 Aligned_cols=94 Identities=17% Similarity=0.175 Sum_probs=62.7
Q ss_pred CCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CCCCce
Q 015534 119 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTKV 190 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~ 190 (405)
...++.+||-+|+|. |.++..+++ .|+.+|+++|.++ -++.+++. +. ..++..+-.... .....+
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----ga---~~~i~~~~~~~~~~~~~~~~~g~ 101 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----GA---DHVVDARRDPVKQVMELTRGRGV 101 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----TC---SEEEETTSCHHHHHHHHTTTCCE
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----cc---ceeecCcccHHHHHHHhhCCCCc
Confidence 457899999999987 566667666 7888999999999 88877753 32 233433221111 123569
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
|+|+-..- . ...+....+.|++||+++..
T Consensus 102 d~vid~~g--------~-~~~~~~a~~~l~~~G~iv~~ 130 (172)
T d1h2ba2 102 NVAMDFVG--------S-QATVDYTPYLLGRMGRLIIV 130 (172)
T ss_dssp EEEEESSC--------C-HHHHHHGGGGEEEEEEEEEC
T ss_pred eEEEEecC--------c-chHHHHHHHHHhCCCEEEEE
Confidence 99985321 1 23456667899999998853
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.83 E-value=0.0002 Score=58.71 Aligned_cols=96 Identities=20% Similarity=0.141 Sum_probs=61.5
Q ss_pred cCCCCCCEEEEEcCC-CcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEc-ccccc-cCCCCceeE
Q 015534 118 KFLFKDKVVLDVGAG-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEEI-ELPVTKVDI 192 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG-~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~~-~~~~~~~D~ 192 (405)
....+|.+||.+|+| .|.++..+++ .|+ +|+++|.++ -++.|++. |.. .++.. +-.+. ....+.+|+
T Consensus 23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~l----Ga~---~~i~~~~~~~~~~~~~~~~d~ 94 (168)
T d1piwa2 23 NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKM----GAD---HYIATLEEGDWGEKYFDTFDL 94 (168)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----TCS---EEEEGGGTSCHHHHSCSCEEE
T ss_pred hCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhcc----CCc---EEeeccchHHHHHhhhcccce
Confidence 467899999999999 4788888887 676 899999999 89888764 432 22322 11111 111367998
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
|+... +. . ... .+....++|+|+|+++..
T Consensus 95 vi~~~-~~-~-~~~----~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 95 IVVCA-SS-L-TDI----DFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp EEECC-SC-S-TTC----CTTTGGGGEEEEEEEEEC
T ss_pred EEEEe-cC-C-ccc----hHHHHHHHhhccceEEEe
Confidence 88521 11 0 000 122345889999998753
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.81 E-value=0.00035 Score=56.70 Aligned_cols=97 Identities=18% Similarity=0.185 Sum_probs=66.2
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcc
Q 015534 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (405)
Q Consensus 121 ~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (405)
.++.+|+-||+|. |..+...|. .|+ .|+++|.++ .++..+..... +++....+-..+.-.-..+|+||...
T Consensus 30 v~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~~-----~~~~~~~~~~~l~~~~~~aDivI~aa 103 (168)
T d1pjca1 30 VKPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAVAEADLLIGAV 103 (168)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHHHTCSEEEECC
T ss_pred CCCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhcc-----cceeehhhhhhHHHhhccCcEEEEee
Confidence 3567999999998 677777777 665 999999999 88887776543 35666555544432225799999854
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
+ ..+...+.-+-+++.+.+|||.+++
T Consensus 104 l---ipG~~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 104 L---VPGRRAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp C---CTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred e---cCCcccCeeecHHHHhhcCCCcEEE
Confidence 3 2222222223355668899999988
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.77 E-value=0.0023 Score=52.05 Aligned_cols=95 Identities=22% Similarity=0.214 Sum_probs=62.3
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc--------c-C
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--------E-L 185 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--------~-~ 185 (405)
....++.+||-+|||. |.++..+++ .|+ +|+++|.++ -++.|++. +. + ..+......+. . .
T Consensus 22 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~----ga-~-~~~~~~~~~~~~~~~~~~~~~~ 94 (170)
T d1e3ja2 22 AGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNC----GA-D-VTLVVDPAKEEESSIIERIRSA 94 (170)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHT----TC-S-EEEECCTTTSCHHHHHHHHHHH
T ss_pred hCCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHc----CC-c-EEEeccccccccchhhhhhhcc
Confidence 4578899999999995 777888888 665 999999999 88888764 32 1 22322211110 0 1
Q ss_pred CCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
....+|+|+-.. + . +..+....++|+|+|+++..
T Consensus 95 ~g~g~D~vid~~-g----~----~~~~~~a~~~~~~~G~iv~~ 128 (170)
T d1e3ja2 95 IGDLPNVTIDCS-G----N----EKCITIGINITRTGGTLMLV 128 (170)
T ss_dssp SSSCCSEEEECS-C----C----HHHHHHHHHHSCTTCEEEEC
T ss_pred cccCCceeeecC-C----C----hHHHHHHHHHHhcCCceEEE
Confidence 125789998521 1 1 23455556889999998843
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.61 E-value=0.0032 Score=50.94 Aligned_cols=93 Identities=16% Similarity=0.131 Sum_probs=59.9
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CCCCc
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTK 189 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~ 189 (405)
....++.+||-+|+|. |.++..+++ .| .+|+++|.++ -++.+++ .|.. .++..+-.+.. ...+.
T Consensus 23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~G-~~Vi~~~~~~~~~~~a~~----~Ga~---~~i~~~~~~~~~~~~~~~~g~ 94 (166)
T d1llua2 23 TNARPGQWVAISGIGGLGHVAVQYARAMG-LHVAAIDIDDAKLELARK----LGAS---LTVNARQEDPVEAIQRDIGGA 94 (166)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHSSE
T ss_pred hCCCCCCEEEEeeccccHHHHHHHHHHcC-CccceecchhhHHHhhhc----cCcc---ccccccchhHHHHHHHhhcCC
Confidence 4578899999999987 777888888 56 5999999999 8887765 3431 33332222211 11234
Q ss_pred eeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+|+|++... ...+....++|+|+|+++..
T Consensus 95 ~~~i~~~~~----------~~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 95 HGVLVTAVS----------NSAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp EEEEECCSC----------HHHHHHHHTTEEEEEEEEEC
T ss_pred ccccccccc----------chHHHHHHHHhcCCcEEEEE
Confidence 455554211 13345566899999998753
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.27 E-value=0.0048 Score=49.99 Aligned_cols=95 Identities=24% Similarity=0.247 Sum_probs=62.8
Q ss_pred cCCCCCCEEEEEcC-C-CcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc------CCC
Q 015534 118 KFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPV 187 (405)
Q Consensus 118 ~~~~~~~~VLDiGc-G-~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~ 187 (405)
....++.+||-+|| | .|.++..+++ .|..+|+++|.++ -++.+++. |.. .++..+-.+.. ...
T Consensus 23 ~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----Ga~---~~i~~~~~~~~~~~~~~~~~ 95 (170)
T d1jvba2 23 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GAD---YVINASMQDPLAEIRRITES 95 (170)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHTTT
T ss_pred hCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----CCc---eeeccCCcCHHHHHHHHhhc
Confidence 46788999999997 3 3566666666 7888999999999 88888764 421 23333322221 123
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+.+|+|+...- . +..+....+.++|||+++..
T Consensus 96 ~~~d~vid~~g-----~----~~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 96 KGVDAVIDLNN-----S----EKTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp SCEEEEEESCC-----C----HHHHTTGGGGEEEEEEEEEC
T ss_pred ccchhhhcccc-----c----chHHHhhhhhcccCCEEEEe
Confidence 67999986321 1 23345556899999998743
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.23 E-value=0.012 Score=47.79 Aligned_cols=97 Identities=21% Similarity=0.138 Sum_probs=62.1
Q ss_pred HHhccCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccc-cc------
Q 015534 114 IYQNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIE-EI------ 183 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~-~~------ 183 (405)
+.+.....+|.+||-.|||. |.++..+++ .|++.|+++|.++ -++.+++. |.. .++..+-. +.
T Consensus 20 l~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l----Ga~---~~i~~~~~~~~~~~~~~ 92 (176)
T d2fzwa2 20 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT---ECINPQDFSKPIQEVLI 92 (176)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS---EEECGGGCSSCHHHHHH
T ss_pred HHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh----CCc---EEEeCCchhhHHHHHHH
Confidence 34445678999999999984 356666666 7888999999999 88888764 322 22322111 11
Q ss_pred cCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
....+.+|+|+-.. + . ...+.....++++||.++
T Consensus 93 ~~~~~g~D~vid~~-G----~----~~~~~~~~~~~~~g~~~~ 126 (176)
T d2fzwa2 93 EMTDGGVDYSFECI-G----N----VKVMRAALEACHKGWGVS 126 (176)
T ss_dssp HHTTSCBSEEEECS-C----C----HHHHHHHHHTBCTTTCEE
T ss_pred HHcCCCCcEeeecC-C----C----HHHHHHHHHhhcCCceeE
Confidence 01236799998532 1 1 234555667888887654
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.03 E-value=0.0028 Score=51.48 Aligned_cols=94 Identities=24% Similarity=0.238 Sum_probs=61.0
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc-ccCCCCceeEE
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-IELPVTKVDII 193 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~I 193 (405)
....+|.+||-+|||. |.++..+++ .|+ +++++|.++ -.+.+++. |. + .++...-.+ .....+.+|++
T Consensus 26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~l----Ga-d--~~i~~~~~~~~~~~~~~~D~v 97 (168)
T d1uufa2 26 WQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKAL----GA-D--EVVNSRNADEMAAHLKSFDFI 97 (168)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH----TC-S--EEEETTCHHHHHTTTTCEEEE
T ss_pred hCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhcc----CC-c--EEEECchhhHHHHhcCCCcee
Confidence 5678999999999986 778888888 666 777899988 77777653 32 1 233222211 11223679998
Q ss_pred EEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+-.. + .... +....+.|+|+|+++..
T Consensus 98 id~~-g----~~~~----~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 98 LNTV-A----APHN----LDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp EECC-S----SCCC----HHHHHTTEEEEEEEEEC
T ss_pred eeee-e----cchh----HHHHHHHHhcCCEEEEe
Confidence 8532 1 1122 23445899999998854
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=95.78 E-value=0.017 Score=49.70 Aligned_cols=109 Identities=11% Similarity=0.058 Sum_probs=75.7
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcC-----------------------------------------CCeEEEEechH-
Q 015534 118 KFLFKDKVVLDVGAGTGILSLFCAKAG-----------------------------------------AAHVYAVECSQ- 155 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~G~l~~~la~~g-----------------------------------------~~~V~~vD~s~- 155 (405)
.....+..++|--||+|.+.+.+|-.. ...++|.|+++
T Consensus 46 ~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ 125 (249)
T d1o9ga_ 46 LPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLE 125 (249)
T ss_dssp SSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred hcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHH
Confidence 444556689999999999988776521 01357899999
Q ss_pred HHHHH---HHHHHHcCCCCcEEEEEcccccccC-----CCCceeEEEEccc-cccccC-----hhhHHHHHHHHHhcccC
Q 015534 156 MANMA---KQIVEANGFSNVITVLKGKIEEIEL-----PVTKVDIIISEWM-GYFLLF-----ENMLNTVLYARDKWLVD 221 (405)
Q Consensus 156 ~~~~a---~~~~~~~~~~~~i~~~~~d~~~~~~-----~~~~~D~Iv~~~~-~~~l~~-----~~~~~~~l~~~~~~Lkp 221 (405)
+++.| ++++...|+.+.|++...|+.+... +....++||+|+. +.-+.. ...+..+...+.+.|..
T Consensus 126 ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~ 205 (249)
T d1o9ga_ 126 AAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPA 205 (249)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCC
Confidence 99988 5688999999999999999866431 2367899999973 122211 12456666677777755
Q ss_pred CcEEE
Q 015534 222 DGIVL 226 (405)
Q Consensus 222 gG~li 226 (405)
...++
T Consensus 206 ~s~~~ 210 (249)
T d1o9ga_ 206 HAVIA 210 (249)
T ss_dssp TCEEE
T ss_pred CcEEE
Confidence 44444
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=95.78 E-value=0.02 Score=46.49 Aligned_cols=97 Identities=18% Similarity=0.157 Sum_probs=63.0
Q ss_pred HHHhccCCCCCCEEEEEcCCC--cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----
Q 015534 113 VIYQNKFLFKDKVVLDVGAGT--GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---- 184 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~--G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---- 184 (405)
++.+.....++.+||-.|+|. |.++..+|+ .|+ +|++++.|+ -.+.+++. |-. .++..+-.++.
T Consensus 19 al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~l----Ga~---~vi~~~~~d~~~~v~ 90 (179)
T d1qora2 19 LLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKA----GAW---QVINYREEDLVERLK 90 (179)
T ss_dssp HHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHH
T ss_pred HHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhc----CCe---EEEECCCCCHHHHHH
Confidence 344445678899999997775 677888888 565 999999999 88887753 432 23332222221
Q ss_pred --CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 185 --LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 185 --~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.....+|+|+...- .. .+......|+++|.++.
T Consensus 91 ~~t~g~g~d~v~d~~g------~~----~~~~~~~~l~~~G~~v~ 125 (179)
T d1qora2 91 EITGGKKVRVVYDSVG------RD----TWERSLDCLQRRGLMVS 125 (179)
T ss_dssp HHTTTCCEEEEEECSC------GG----GHHHHHHTEEEEEEEEE
T ss_pred HHhCCCCeEEEEeCcc------HH----HHHHHHHHHhcCCeeee
Confidence 12467999886321 12 23445578999998764
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.75 E-value=0.027 Score=45.02 Aligned_cols=85 Identities=16% Similarity=0.068 Sum_probs=58.1
Q ss_pred EEEEEcCCC--cHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEcccccc
Q 015534 125 VVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (405)
Q Consensus 125 ~VLDiGcG~--G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~ 201 (405)
+|.-||+|. +.++..+.+.|. +|+++|.++ .++.|++ .++ +.....+.+.+ ...|+|+...
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~----~~~---~~~~~~~~~~~----~~~DiIilav---- 65 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVE----RQL---VDEAGQDLSLL----QTAKIIFLCT---- 65 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTS---CSEEESCGGGG----TTCSEEEECS----
T ss_pred EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHH----hhc---cceeeeecccc----cccccccccC----
Confidence 688899985 356667777776 999999999 8777654 333 21222333322 5789998632
Q ss_pred ccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 202 LLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.......++..+...|+++..++-
T Consensus 66 --p~~~~~~vl~~l~~~l~~~~iv~~ 89 (165)
T d2f1ka2 66 --PIQLILPTLEKLIPHLSPTAIVTD 89 (165)
T ss_dssp --CHHHHHHHHHHHGGGSCTTCEEEE
T ss_pred --cHhhhhhhhhhhhhhcccccceee
Confidence 235667888899888998887763
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.74 E-value=0.011 Score=47.58 Aligned_cols=94 Identities=17% Similarity=0.082 Sum_probs=58.0
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CCCCce
Q 015534 118 KFLFKDKVVLDVGAGT-GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LPVTKV 190 (405)
Q Consensus 118 ~~~~~~~~VLDiGcG~-G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~~ 190 (405)
....++.+||-.|+|. |.++..+++....+|+++|.++ -++.+++ .|.. .++...-.+.. ...+.+
T Consensus 23 ~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~----~Ga~---~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T d1rjwa2 23 TGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGAD---LVVNPLKEDAAKFMKEKVGGVH 95 (168)
T ss_dssp HTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTCS---EEECTTTSCHHHHHHHHHSSEE
T ss_pred hCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh----cCcc---eecccccchhhhhcccccCCCc
Confidence 3567899999999988 6777777774334899999999 8877765 3432 22221111111 112445
Q ss_pred eEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
|+|++.. . ...+....+.|+|+|.++..
T Consensus 96 ~~v~~~~------~----~~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 96 AAVVTAV------S----KPAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp EEEESSC------C----HHHHHHHHHHEEEEEEEEEC
T ss_pred eEEeecC------C----HHHHHHHHHHhccCCceEec
Confidence 5554321 1 23455666889999998854
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.50 E-value=0.0019 Score=52.95 Aligned_cols=42 Identities=26% Similarity=0.364 Sum_probs=34.1
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHH
Q 015534 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQI 163 (405)
Q Consensus 121 ~~~~~VLDiGcG~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~ 163 (405)
.++.+||-||+|. |..+...|. .|+ .|+++|.++ .++..+..
T Consensus 27 V~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l 71 (183)
T d1l7da1 27 VPPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESL 71 (183)
T ss_dssp ECCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHT
T ss_pred cCCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHh
Confidence 4567999999998 666777776 666 999999999 88877764
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=95.43 E-value=0.097 Score=46.14 Aligned_cols=122 Identities=7% Similarity=0.021 Sum_probs=81.2
Q ss_pred hHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCC--CcEEEEEcccccc
Q 015534 106 RTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFS--NVITVLKGKIEEI 183 (405)
Q Consensus 106 r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~~~--~~i~~~~~d~~~~ 183 (405)
|+..+-+.+.+.... ....|+.+|||-=.-...+...+..+++=||.-++++.-++.+.+.+.. .+..++..|+.+.
T Consensus 74 Rtr~~D~~~~~~~~~-g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~ 152 (297)
T d2uyoa1 74 RTNFFDTYFNNAVID-GIRQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQD 152 (297)
T ss_dssp HHHHHHHHHHHHHHT-TCCEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSC
T ss_pred HHHHHHHHHHHHHhh-CCCeEEEeCcccCChhhhcCCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccch
Confidence 444444444433322 2345667999987666555322344788888655888888888877643 5577888887652
Q ss_pred c--------CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecC
Q 015534 184 E--------LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (405)
Q Consensus 184 ~--------~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (405)
. +.....-+++++.+..++ .+.....++..+..+..||+.+++..
T Consensus 153 ~~~~L~~~g~d~~~ptl~i~EGvl~YL-~~~~~~~ll~~i~~~~~~GS~l~~d~ 205 (297)
T d2uyoa1 153 WPPALRSAGFDPSARTAWLAEGLLMYL-PATAQDGLFTEIGGLSAVGSRIAVET 205 (297)
T ss_dssp HHHHHHHTTCCTTSCEEEEECSCGGGS-CHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred HHHHHHhcCCCCCCCEEEEEccccccC-CHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 1 123556788888876666 45678899999999999999988653
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.42 E-value=0.017 Score=47.11 Aligned_cols=97 Identities=20% Similarity=0.205 Sum_probs=60.6
Q ss_pred HHHhccCCCCCCEEEEEcC--CCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----
Q 015534 113 VIYQNKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---- 184 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---- 184 (405)
++.+.....+|.+||-.|. |.|.++..+|+ .|+ +|+++.-++ -.+.+++ .|.. .++..+-.++.
T Consensus 16 al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~----~Ga~---~vi~~~~~~~~~~v~ 87 (183)
T d1pqwa_ 16 SLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSR----LGVE---YVGDSRSVDFADEIL 87 (183)
T ss_dssp HHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHT----TCCS---EEEETTCSTHHHHHH
T ss_pred HHHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeeccccccccccc----cccc---ccccCCccCHHHHHH
Confidence 3444456788999999884 33677788888 566 888887777 6666654 4542 22322222221
Q ss_pred --CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 185 --LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 185 --~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.....+|+|+...- . ..+..+.++|+++|+++.
T Consensus 88 ~~t~~~g~d~v~d~~g-----~-----~~~~~~~~~l~~~G~~v~ 122 (183)
T d1pqwa_ 88 ELTDGYGVDVVLNSLA-----G-----EAIQRGVQILAPGGRFIE 122 (183)
T ss_dssp HHTTTCCEEEEEECCC-----T-----HHHHHHHHTEEEEEEEEE
T ss_pred HHhCCCCEEEEEeccc-----c-----hHHHHHHHHhcCCCEEEE
Confidence 22367999996321 1 234455689999999885
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.19 E-value=0.051 Score=43.49 Aligned_cols=87 Identities=20% Similarity=0.225 Sum_probs=57.4
Q ss_pred EEEEEcCCC-c-HHHHHHHHcCC-CeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEEccccc
Q 015534 125 VVLDVGAGT-G-ILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (405)
Q Consensus 125 ~VLDiGcG~-G-~l~~~la~~g~-~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (405)
+|+-||||. | .++..+.+.|. .+|+++|.++ .++.|++. +. +.....+..... ....|+|+...
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~---~~~~~~~~~~~~--~~~~dlIila~--- 70 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GI---IDEGTTSIAKVE--DFSPDFVMLSS--- 70 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TS---CSEEESCGGGGG--GTCCSEEEECS---
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hc---chhhhhhhhhhh--ccccccccccC---
Confidence 688899986 3 45666666664 5899999999 88887753 32 222222222221 24689998632
Q ss_pred cccChhhHHHHHHHHHhcccCCcEEE
Q 015534 201 FLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
.......++..+...++++..++
T Consensus 71 ---p~~~~~~vl~~l~~~~~~~~ii~ 93 (171)
T d2g5ca2 71 ---PVRTFREIAKKLSYILSEDATVT 93 (171)
T ss_dssp ---CHHHHHHHHHHHHHHSCTTCEEE
T ss_pred ---Cchhhhhhhhhhhcccccccccc
Confidence 23456778888888899887665
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=95.08 E-value=0.069 Score=42.89 Aligned_cols=50 Identities=18% Similarity=0.177 Sum_probs=38.3
Q ss_pred HHhccCCCCCCEEEEEcCCCc-HHHHHHHH-cCCCeEEEEechH-HHHHHHHH
Q 015534 114 IYQNKFLFKDKVVLDVGAGTG-ILSLFCAK-AGAAHVYAVECSQ-MANMAKQI 163 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G-~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~ 163 (405)
+.+....+++.+||-+|+|.+ ..+..+++ .|+..|+++|.++ -++.|++.
T Consensus 20 ~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~ 72 (175)
T d1cdoa2 20 AVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF 72 (175)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred HHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc
Confidence 444456889999999999985 44444444 7888999999999 88887753
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=95.02 E-value=0.037 Score=45.03 Aligned_cols=97 Identities=20% Similarity=0.088 Sum_probs=63.9
Q ss_pred HHHhccCCCCCCEEEEEcCCC--cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----
Q 015534 113 VIYQNKFLFKDKVVLDVGAGT--GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---- 184 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG~--G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---- 184 (405)
++.+.....+|.+||-.|+|. |..+..+++ .|+ +|+++.-++ -.+.+++. |.. .++..+-++..
T Consensus 20 al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~----Ga~---~vi~~~~~~~~~~~~ 91 (182)
T d1v3va2 20 GLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQI----GFD---AAFNYKTVNSLEEAL 91 (182)
T ss_dssp HHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT----TCS---EEEETTSCSCHHHHH
T ss_pred HHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHhh----hhh---hhcccccccHHHHHH
Confidence 344456678999999989866 477888888 555 999999888 77776653 432 22322222111
Q ss_pred --CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 185 --LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 185 --~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.....+|+|+-.. . ...+....++|+|+|.++.
T Consensus 92 ~~~~~~Gvd~v~D~v--------G--~~~~~~~~~~l~~~G~~v~ 126 (182)
T d1v3va2 92 KKASPDGYDCYFDNV--------G--GEFLNTVLSQMKDFGKIAI 126 (182)
T ss_dssp HHHCTTCEEEEEESS--------C--HHHHHHHGGGEEEEEEEEE
T ss_pred HHhhcCCCceeEEec--------C--chhhhhhhhhccCCCeEEe
Confidence 1246799998521 1 1345677799999999884
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=94.98 E-value=0.025 Score=50.20 Aligned_cols=67 Identities=27% Similarity=0.244 Sum_probs=53.2
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC-CCceeEEEEcc
Q 015534 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEW 197 (405)
Q Consensus 124 ~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~ 197 (405)
.+|||+-||.|.+++-+-++|...|.++|+++ +++..+.+. + -+++.+|+.++... -..+|+++..+
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~-----~--~~~~~~Di~~~~~~~~~~~dll~~g~ 69 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSDEFPKCDGIIGGP 69 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHC-----C--SEEEESCTTTSCGGGSCCCSEEEECC
T ss_pred CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC-----C--CCCccCChhhCCHhHcccccEEeecc
Confidence 37999999999999999889998888999999 887766653 2 35678999887532 24789999853
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=94.97 E-value=0.091 Score=42.21 Aligned_cols=50 Identities=20% Similarity=0.229 Sum_probs=38.0
Q ss_pred HHhccCCCCCCEEEEEcCCCc-HHHHHHHH-cCCCeEEEEechH-HHHHHHHH
Q 015534 114 IYQNKFLFKDKVVLDVGAGTG-ILSLFCAK-AGAAHVYAVECSQ-MANMAKQI 163 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~G-~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~ 163 (405)
+.+.....+|.+||-+|+|.+ .++..+++ .|+.+|+++|.++ -.+.+++.
T Consensus 20 l~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~ 72 (176)
T d2jhfa2 20 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV 72 (176)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred HHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh
Confidence 344456889999999999764 44444444 7888999999999 88887764
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.96 E-value=0.073 Score=43.75 Aligned_cols=99 Identities=20% Similarity=0.310 Sum_probs=65.8
Q ss_pred CEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc-------CCC--------------CcEEEEEcc
Q 015534 124 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------GFS--------------NVITVLKGK 179 (405)
Q Consensus 124 ~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-------~~~--------------~~i~~~~~d 179 (405)
++|--||+|+ | .++..++..|. .|+.+|.++ .++.+++.+... +.. .++.+.. |
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~-d 82 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST-D 82 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES-C
T ss_pred EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccc-h
Confidence 4799999998 3 55677777887 999999999 999888776532 221 1222222 2
Q ss_pred cccccCCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCce
Q 015534 180 IEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 180 ~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
..+. -...|+|+-.. ......-..++..+.++++++.++.-++.+
T Consensus 83 ~~~a---~~~ad~ViEav----~E~l~~K~~v~~~l~~~~~~~~ilasnTS~ 127 (192)
T d1f0ya2 83 AASV---VHSTDLVVEAI----VENLKVKNELFKRLDKFAAEHTIFASNTSS 127 (192)
T ss_dssp HHHH---TTSCSEEEECC----CSCHHHHHHHHHHHTTTSCTTCEEEECCSS
T ss_pred hHhh---hcccceehhhc----ccchhHHHHHHHHHhhhcccCceeeccCcc
Confidence 2221 15688888532 223355678999999999999887765543
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=94.82 E-value=0.024 Score=48.62 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=40.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHH
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVE 165 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~ 165 (405)
..+|..|||.-||+|..+..+.+.|- +.+|+|+++ .++.|++++.
T Consensus 210 s~~gd~VlDpF~GSGTT~~aa~~~~R-~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 210 SNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCchHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHc
Confidence 47889999999999999998888865 999999999 9999999875
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=94.66 E-value=0.026 Score=50.50 Aligned_cols=69 Identities=20% Similarity=0.290 Sum_probs=54.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC-CCceeEEEEcc
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEW 197 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~ 197 (405)
..+.+|||+-||.|.+++.|.++|...|.++|+++ +++..+.+... ..++|+.++... ...+|+|+..+
T Consensus 9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~--------~~~~Di~~~~~~~~~~~Dll~ggp 79 (327)
T d2c7pa1 9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE--------KPEGDITQVNEKTIPDHDILCAGF 79 (327)
T ss_dssp TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC--------CCBSCGGGSCGGGSCCCSEEEEEC
T ss_pred CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCC--------CCcCchhcCchhhcceeeeeeccc
Confidence 45689999999999999999999998888999999 99888877632 125788777532 24799999854
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.60 E-value=0.14 Score=38.93 Aligned_cols=84 Identities=14% Similarity=0.147 Sum_probs=51.3
Q ss_pred EEEEEcCCCcHHHHHHH----HcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEE
Q 015534 125 VVLDVGAGTGILSLFCA----KAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIIS 195 (405)
Q Consensus 125 ~VLDiGcG~G~l~~~la----~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv~ 195 (405)
+|+-+|+| .++..++ +.|. .|+.+|.++ .++.+++. .+ +.++.+|..+.. ..-..+|.+++
T Consensus 2 ~IvI~G~G--~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~---~~----~~vi~Gd~~~~~~l~~~~i~~a~~vv~ 71 (132)
T d1lssa_ 2 YIIIAGIG--RVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAE---ID----ALVINGDCTKIKTLEDAGIEDADMYIA 71 (132)
T ss_dssp EEEEECCS--HHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH---CS----SEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred EEEEECCC--HHHHHHHHHHHHCCC-CcceecCChhhhhhhhhh---hh----hhhccCcccchhhhhhcChhhhhhhcc
Confidence 67887775 4444444 4555 999999999 88766543 12 578999987754 23367899987
Q ss_pred ccccccccChhhHHHHHHHHHhcccCCcE
Q 015534 196 EWMGYFLLFENMLNTVLYARDKWLVDDGI 224 (405)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~ 224 (405)
-. .......+.....+.+.+..+
T Consensus 72 ~t------~~d~~N~~~~~~~k~~~~~~i 94 (132)
T d1lssa_ 72 VT------GKEEVNLMSSLLAKSYGINKT 94 (132)
T ss_dssp CC------SCHHHHHHHHHHHHHTTCCCE
T ss_pred cC------CcHHHHHHHHHHHHHcCCceE
Confidence 32 112222333334455666643
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.47 E-value=0.065 Score=46.23 Aligned_cols=76 Identities=17% Similarity=0.253 Sum_probs=60.7
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----------CC
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LP 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 186 (405)
.++++||-.|++.| .++..+++.|+ +|+.++.++ -++.+.+.+...+.+.++.++.+|+.+.. -.
T Consensus 8 lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~ 86 (257)
T d1xg5a_ 8 WRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ 86 (257)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 57899999999998 45667777888 899999999 88888888888777678999999997642 01
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
-+..|++|.+.
T Consensus 87 ~g~iD~lVnnA 97 (257)
T d1xg5a_ 87 HSGVDICINNA 97 (257)
T ss_dssp HCCCSEEEECC
T ss_pred cCCCCEEEecc
Confidence 26799999864
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=94.47 E-value=0.017 Score=51.33 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=41.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN 167 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~ 167 (405)
..+|..|||.-||+|..+..+.+.|- +.+|+|+++ .++.|++++...
T Consensus 248 s~~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~~ 295 (320)
T d1booa_ 248 TEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDN 295 (320)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCS
T ss_pred ccCCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHhc
Confidence 46889999999999999999988865 999999999 999999887554
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=94.29 E-value=0.057 Score=48.90 Aligned_cols=104 Identities=16% Similarity=0.245 Sum_probs=60.1
Q ss_pred CEEEEEcCCCcHHHHHHHHc------------C-----CCeEEEEechH--HHHHHHHHHHHcCCCC--cEEEEEccccc
Q 015534 124 KVVLDVGAGTGILSLFCAKA------------G-----AAHVYAVECSQ--MANMAKQIVEANGFSN--VITVLKGKIEE 182 (405)
Q Consensus 124 ~~VLDiGcG~G~l~~~la~~------------g-----~~~V~~vD~s~--~~~~a~~~~~~~~~~~--~i~~~~~d~~~ 182 (405)
-+|.|+||.+|..++.+... + .-+|+--|... .-...+.......... -+..+.+.+-.
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~ 132 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence 57999999999877543321 1 11455555443 2222222111111111 12334455544
Q ss_pred ccCCCCceeEEEEccccccccC------------------------------hhhHHHHHHHHHhcccCCcEEEe
Q 015534 183 IELPVTKVDIIISEWMGYFLLF------------------------------ENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 183 ~~~~~~~~D~Iv~~~~~~~l~~------------------------------~~~~~~~l~~~~~~LkpgG~lip 227 (405)
-.+|.++.|+++|....++|.. ..++..+|+.+++-|+|||+++.
T Consensus 133 rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl 207 (359)
T d1m6ex_ 133 RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVL 207 (359)
T ss_dssp CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEE
T ss_pred hcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 4577899999999654444321 12456899999999999999884
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.25 E-value=0.027 Score=45.81 Aligned_cols=99 Identities=16% Similarity=0.097 Sum_probs=60.8
Q ss_pred HHhccCCCCCCEEEEEcCCC--cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc--cCCC
Q 015534 114 IYQNKFLFKDKVVLDVGAGT--GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--ELPV 187 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~--G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~ 187 (405)
+.......++.+||--|++. |.++..+++ .|+ +|+++--++ -.+.+++. |....+.. ..+..+. ....
T Consensus 23 L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~l----Ga~~vi~~-~~~~~~~~~~~~~ 96 (176)
T d1xa0a2 23 LEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVL----GAKEVLAR-EDVMAERIRPLDK 96 (176)
T ss_dssp HHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHT----TCSEEEEC-C---------CCS
T ss_pred HHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHhc----ccceeeec-chhHHHHHHHhhc
Confidence 44445566788999999655 578888888 555 999999888 88777653 33211111 1111111 1234
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+.+|+|+-..- ... +....++|+|||+++..
T Consensus 97 ~gvD~vid~vg------g~~----~~~~l~~l~~~Griv~~ 127 (176)
T d1xa0a2 97 QRWAAAVDPVG------GRT----LATVLSRMRYGGAVAVS 127 (176)
T ss_dssp CCEEEEEECST------TTT----HHHHHHTEEEEEEEEEC
T ss_pred cCcCEEEEcCC------chh----HHHHHHHhCCCceEEEe
Confidence 78999885321 112 44455899999999854
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.20 E-value=0.036 Score=48.06 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=42.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN 167 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~ 167 (405)
..+|..|||.-||+|..+..+.+.|- +.+|+|+++ .++.|++++...
T Consensus 205 s~~gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 205 SHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp SCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC
T ss_pred cCCCCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence 46899999999999999999888865 999999999 999999998764
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.81 E-value=0.022 Score=51.16 Aligned_cols=69 Identities=20% Similarity=0.173 Sum_probs=52.4
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCC--eEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC---CCCceeEEEEc
Q 015534 123 DKVVLDVGAGTGILSLFCAKAGAA--HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---PVTKVDIIISE 196 (405)
Q Consensus 123 ~~~VLDiGcG~G~l~~~la~~g~~--~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~D~Iv~~ 196 (405)
+.+|+|+-||.|.+++.+-++|.. -|.++|+++ +++..+.+.. ...++.+|+.++.. +...+|+++..
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~------~~~~~~~di~~~~~~~~~~~~~Dll~gg 75 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFDRLSFDMILMS 75 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC------CCCcccCchhhCCHhHcCCCCccEEEee
Confidence 458999999999999888788863 478999999 8887776542 24567788887652 22468999985
Q ss_pred c
Q 015534 197 W 197 (405)
Q Consensus 197 ~ 197 (405)
+
T Consensus 76 p 76 (343)
T d1g55a_ 76 P 76 (343)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=93.61 E-value=0.022 Score=46.10 Aligned_cols=92 Identities=15% Similarity=0.133 Sum_probs=58.7
Q ss_pred cCCCCCCEEEEEcC-CC-cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccc-cccCCCCceeE
Q 015534 118 KFLFKDKVVLDVGA-GT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIE-EIELPVTKVDI 192 (405)
Q Consensus 118 ~~~~~~~~VLDiGc-G~-G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~~D~ 192 (405)
....++.+||-.|+ |. |.++..+++ .|+ +|++++.++ -.+.+++ .|... + +-..+.. .... ...+|+
T Consensus 23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~----lGa~~-~-i~~~~~~~~~~~-~~g~D~ 94 (171)
T d1iz0a2 23 AQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA----LGAEE-A-ATYAEVPERAKA-WGGLDL 94 (171)
T ss_dssp TTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH----TTCSE-E-EEGGGHHHHHHH-TTSEEE
T ss_pred hCCCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccc----cccce-e-eehhhhhhhhhc-cccccc
Confidence 56789999999985 33 677888888 566 899999988 7777765 34321 1 1111211 1112 367999
Q ss_pred EEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
|+- ..+ +. +....+.|+|+|+++..
T Consensus 95 v~d-~~G------~~----~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 95 VLE-VRG------KE----VEESLGLLAHGGRLVYI 119 (171)
T ss_dssp EEE-CSC------TT----HHHHHTTEEEEEEEEEC
T ss_pred ccc-ccc------hh----HHHHHHHHhcCCcEEEE
Confidence 985 221 12 23445899999998843
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.60 E-value=0.091 Score=42.80 Aligned_cols=95 Identities=13% Similarity=0.108 Sum_probs=58.0
Q ss_pred cCCCCC--CEEEEEcC--CCcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----CC
Q 015534 118 KFLFKD--KVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LP 186 (405)
Q Consensus 118 ~~~~~~--~~VLDiGc--G~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~ 186 (405)
....++ .+||-.|+ |.|..+..+|+ .|+..|+++..++ ....+. ...+.. .++...-.++. ..
T Consensus 24 ~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~---~~~gad---~vi~~~~~~~~~~~~~~~ 97 (187)
T d1vj1a2 24 GHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLT---SELGFD---AAVNYKTGNVAEQLREAC 97 (187)
T ss_dssp SCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHH---HHSCCS---EEEETTSSCHHHHHHHHC
T ss_pred hCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhh---hcccce---EEeeccchhHHHHHHHHh
Confidence 344555 78999883 56899999999 7888888877765 333222 223432 23333222211 12
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
+..+|+|+-.. . ...+....+.|+|+|+++..
T Consensus 98 ~~GvDvv~D~v------G----g~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 98 PGGVDVYFDNV------G----GDISNTVISQMNENSHIILC 129 (187)
T ss_dssp TTCEEEEEESS------C----HHHHHHHHTTEEEEEEEEEC
T ss_pred ccCceEEEecC------C----chhHHHHhhhccccccEEEe
Confidence 36799998522 1 12356667899999998753
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=93.52 E-value=0.089 Score=42.93 Aligned_cols=101 Identities=12% Similarity=0.064 Sum_probs=57.6
Q ss_pred HHHhccCCCCCCEEEEEcCC---CcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEc---cccccc
Q 015534 113 VIYQNKFLFKDKVVLDVGAG---TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG---KIEEIE 184 (405)
Q Consensus 113 ~i~~~~~~~~~~~VLDiGcG---~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~---d~~~~~ 184 (405)
++.......+|.+||-+.+| .|..+..+|+ .|+ +|+++=-++ ..+...+.+++.|... ++.. +..++.
T Consensus 19 ~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGad~---vi~~~~~~~~~~~ 94 (189)
T d1gu7a2 19 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGATQ---VITEDQNNSREFG 94 (189)
T ss_dssp HHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCSE---EEEHHHHHCGGGH
T ss_pred HHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccccE---EEeccccchhHHH
Confidence 34444567888888888433 3567777888 677 777764333 4444444555556532 2322 221111
Q ss_pred --------CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 185 --------LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 185 --------~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.....+|+|+-. + +.+. +....++|+|+|+++.
T Consensus 95 ~~v~~~~~~~g~~vdvv~D~-v-----g~~~----~~~~~~~l~~~G~~v~ 135 (189)
T d1gu7a2 95 PTIKEWIKQSGGEAKLALNC-V-----GGKS----STGIARKLNNNGLMLT 135 (189)
T ss_dssp HHHHHHHHHHTCCEEEEEES-S-----CHHH----HHHHHHTSCTTCEEEE
T ss_pred HHHHHHHhhccCCceEEEEC-C-----Ccch----hhhhhhhhcCCcEEEE
Confidence 012569999842 1 1122 3445588999999884
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=92.73 E-value=0.26 Score=42.26 Aligned_cols=73 Identities=18% Similarity=0.146 Sum_probs=56.4
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----------C-
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------L- 185 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~- 185 (405)
.+|+++|--|++.| .++..+++.|+ +|+.+|.++ -++.+.+.+...+ .++.++.+|+.+.. .
T Consensus 6 L~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d2ae2a_ 6 LEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANH 82 (259)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHH
Confidence 47899999999988 45777777887 899999999 8877777777665 45888999986532 0
Q ss_pred CCCceeEEEEc
Q 015534 186 PVTKVDIIISE 196 (405)
Q Consensus 186 ~~~~~D~Iv~~ 196 (405)
-.++.|++|.+
T Consensus 83 ~~~~idilvnn 93 (259)
T d2ae2a_ 83 FHGKLNILVNN 93 (259)
T ss_dssp TTTCCCEEEEC
T ss_pred hCCCceEEEEC
Confidence 12479999986
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=92.63 E-value=0.28 Score=42.01 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=56.9
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----------C
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----------L 185 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~ 185 (405)
.+|++||-.|+..| .++..+++.|+ +|+.++.++ -++.+.+.+...+. .+.++..|+.+.. .
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~D~s~~~~~~~~~~~~~~~ 80 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAHV 80 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--CceEEEeecCCHHHHHHHHHHHHHH
Confidence 47899999999988 45667777888 999999999 88888777877763 4888899987643 1
Q ss_pred CCCceeEEEEc
Q 015534 186 PVTKVDIIISE 196 (405)
Q Consensus 186 ~~~~~D~Iv~~ 196 (405)
-.+..|+++.+
T Consensus 81 ~~g~idilinn 91 (258)
T d1ae1a_ 81 FDGKLNILVNN 91 (258)
T ss_dssp TTSCCCEEEEC
T ss_pred hCCCcEEEecc
Confidence 12678999874
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=92.43 E-value=0.24 Score=40.32 Aligned_cols=79 Identities=14% Similarity=0.020 Sum_probs=52.8
Q ss_pred HhccCCCCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccc---ccCCC
Q 015534 115 YQNKFLFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE---IELPV 187 (405)
Q Consensus 115 ~~~~~~~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~ 187 (405)
.......++++||-.|++.| .++..+++.|+ +|+.++.++ -++.+.+.+..+. ++.+...|+.+ +.-.-
T Consensus 15 ~~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~ 90 (191)
T d1luaa1 15 KAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRF---KVNVTAAETADDASRAEAV 90 (191)
T ss_dssp HHTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHH---TCCCEEEECCSHHHHHHHT
T ss_pred HHcCCCCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhcc---chhhhhhhcccHHHHHHHh
Confidence 33345678999999998887 55677777887 899999998 7666666555432 23444455433 22112
Q ss_pred CceeEEEEcc
Q 015534 188 TKVDIIISEW 197 (405)
Q Consensus 188 ~~~D~Iv~~~ 197 (405)
+..|++|.+.
T Consensus 91 ~~iDilin~A 100 (191)
T d1luaa1 91 KGAHFVFTAG 100 (191)
T ss_dssp TTCSEEEECC
T ss_pred cCcCeeeecC
Confidence 6789999863
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=92.27 E-value=0.23 Score=39.60 Aligned_cols=98 Identities=19% Similarity=0.108 Sum_probs=60.5
Q ss_pred HHhccCCCCCCEEEEEcCCC--cHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccc---cCC
Q 015534 114 IYQNKFLFKDKVVLDVGAGT--GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI---ELP 186 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG~--G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~ 186 (405)
+.......++.+||--|++. |.++..+|+ .|+ +|+++.-++ -.+.+++. |.. ..+...+...- ...
T Consensus 15 L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~l----Gad--~vi~~~~~~~~~~~~~~ 87 (167)
T d1tt7a2 15 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQL----GAS--EVISREDVYDGTLKALS 87 (167)
T ss_dssp HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHH----TCS--EEEEHHHHCSSCCCSSC
T ss_pred HHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHhh----ccc--ceEeccchhchhhhccc
Confidence 44434445566788887543 588888888 676 999999998 88877664 432 11211221111 122
Q ss_pred CCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
.+.+|+|+-..- . ..+....+.|+|+|+++..
T Consensus 88 ~~gvd~vid~vg------g----~~~~~~~~~l~~~G~iv~~ 119 (167)
T d1tt7a2 88 KQQWQGAVDPVG------G----KQLASLLSKIQYGGSVAVS 119 (167)
T ss_dssp CCCEEEEEESCC------T----HHHHHHHTTEEEEEEEEEC
T ss_pred CCCceEEEecCc------H----HHHHHHHHHhccCceEEEe
Confidence 467999985321 1 2345566899999998743
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.07 E-value=0.31 Score=41.36 Aligned_cols=75 Identities=16% Similarity=0.174 Sum_probs=59.1
Q ss_pred CCCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------
Q 015534 120 LFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---------- 185 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------- 185 (405)
...|++||--|++.| .++..+++.|+ +|+.+|.++ -++...+.+...+ .++.++.+|+.+...
T Consensus 4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~ 80 (244)
T d1yb1a_ 4 SVTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKA 80 (244)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 467899999999998 56777888888 899999999 7777777676665 468999999987531
Q ss_pred CCCceeEEEEcc
Q 015534 186 PVTKVDIIISEW 197 (405)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (405)
..+..|+++.+.
T Consensus 81 ~~g~idilinna 92 (244)
T d1yb1a_ 81 EIGDVSILVNNA 92 (244)
T ss_dssp HTCCCSEEEECC
T ss_pred HcCCCceeEeec
Confidence 136799999853
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=92.05 E-value=0.26 Score=42.25 Aligned_cols=76 Identities=21% Similarity=0.260 Sum_probs=58.4
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (405)
.+|+++|--|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+...+...++.++.+|+.+... .
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 80 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 80 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence 46889999999998 46778888887 899999999 877777666665555578899999876430 1
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
-++.|++|.+.
T Consensus 81 ~G~iDiLVnnA 91 (258)
T d1iy8a_ 81 FGRIDGFFNNA 91 (258)
T ss_dssp HSCCSEEEECC
T ss_pred hCCCCEEEECC
Confidence 26799999863
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=91.74 E-value=0.74 Score=36.78 Aligned_cols=97 Identities=20% Similarity=0.112 Sum_probs=58.6
Q ss_pred HHhccCCCCCCEEEEEcCC--CcHHHHHHHH-cCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--CCC
Q 015534 114 IYQNKFLFKDKVVLDVGAG--TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPV 187 (405)
Q Consensus 114 i~~~~~~~~~~~VLDiGcG--~G~l~~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~ 187 (405)
+.......++.+||-.|+. .|..++.+|+ .|+ +|+++.-++ ..+.+++. |. -.++..+-.+.. +..
T Consensus 23 l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~~~l----Ga---d~vi~~~~~~~~~~l~~ 94 (177)
T d1o89a2 23 LEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSL----GA---SRVLPRDEFAESRPLEK 94 (177)
T ss_dssp HHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHH----TE---EEEEEGGGSSSCCSSCC
T ss_pred HHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHHHhh----cc---ccccccccHHHHHHHHh
Confidence 3333333445578877643 3577888888 566 899999998 87777653 32 233433322221 334
Q ss_pred CceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEec
Q 015534 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (405)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (405)
..+|.|+-. ++ . ..+....+.|+++|+++..
T Consensus 95 ~~~~~vvD~-Vg-----g----~~~~~~l~~l~~~Griv~~ 125 (177)
T d1o89a2 95 QVWAGAIDT-VG-----D----KVLAKVLAQMNYGGCVAAC 125 (177)
T ss_dssp CCEEEEEES-SC-----H----HHHHHHHHTEEEEEEEEEC
T ss_pred hcCCeeEEE-cc-----h----HHHHHHHHHhccccceEee
Confidence 668988632 21 1 2355666889999998853
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=91.72 E-value=0.2 Score=40.75 Aligned_cols=98 Identities=15% Similarity=0.185 Sum_probs=62.9
Q ss_pred CEEEEEcCCCc--HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHc-------C-CC--------CcEEEEEccccccc
Q 015534 124 KVVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------G-FS--------NVITVLKGKIEEIE 184 (405)
Q Consensus 124 ~~VLDiGcG~G--~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~-------~-~~--------~~i~~~~~d~~~~~ 184 (405)
++|--||+|+= .++..++..|. +|+.+|.++ .++.+.+.+... + +. +++.. ..+...+
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~- 81 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGT-PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP-TLSYGDF- 81 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE-ESSSTTG-
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec-ccccccc-
Confidence 46888999873 44556777876 899999999 888877665422 1 10 12222 2222222
Q ss_pred CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEEecCce
Q 015534 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (405)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (405)
...|+|+=.. ......-..++..+.++++|+-+|.-++.+
T Consensus 82 ---~~adlViEav----~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~ 121 (186)
T d1wdka3 82 ---GNVDLVVEAV----VENPKVKQAVLAEVENHVREDAILASNTST 121 (186)
T ss_dssp ---GGCSEEEECC----CSCHHHHHHHHHHHHTTSCTTCEEEECCSS
T ss_pred ---cccceeeeee----cchHHHHHHHHHHHHhhcCCCeeEEecccc
Confidence 5689888432 223345568899999999999887755433
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=91.57 E-value=0.31 Score=41.76 Aligned_cols=73 Identities=23% Similarity=0.313 Sum_probs=57.5
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----------CC
Q 015534 121 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LP 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~---l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 186 (405)
.+|+++|--|++.|+ ++..+++.|+ +|+.+|.++ .++.+.+.+...+ .++..+.+|+.+.. -.
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (260)
T d1zema1 3 FNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRD 79 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 478999999999883 5777788887 899999999 8888888777665 45889999987642 01
Q ss_pred CCceeEEEEc
Q 015534 187 VTKVDIIISE 196 (405)
Q Consensus 187 ~~~~D~Iv~~ 196 (405)
-+..|++|.+
T Consensus 80 ~g~iDilVnn 89 (260)
T d1zema1 80 FGKIDFLFNN 89 (260)
T ss_dssp HSCCCEEEEC
T ss_pred hCCCCeehhh
Confidence 2679999975
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.56 E-value=0.71 Score=40.90 Aligned_cols=121 Identities=12% Similarity=0.114 Sum_probs=74.9
Q ss_pred HhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEechHHHHHHHHHHHHcC---------------
Q 015534 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANG--------------- 168 (405)
Q Consensus 105 ~r~~~~~~~i~~~~~~~~~~~VLDiGcG~G~l~~~la~-~g~~~V~~vD~s~~~~~a~~~~~~~~--------------- 168 (405)
.|+..+...+.+.....+...|+-+|||.=.....+.. .+..+++=||..++++.=++.+..+.
T Consensus 79 ~Rt~~id~~v~~Fl~~~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~ 158 (328)
T d1rjda_ 79 LRTVGIDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAK 158 (328)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCC
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhcccccccccc
Confidence 45555555555444345566899999999887777765 33335566666554444334443321
Q ss_pred -----CCCcEEEEEccccccc---------CCCCceeEEEEccccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 169 -----FSNVITVLKGKIEEIE---------LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 169 -----~~~~i~~~~~d~~~~~---------~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
.+++..++..|+.++. +.....-++++|.+..++ .+.....+++.+.+....+..++
T Consensus 159 ~~~~~~s~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl-~~~~~~~li~~~~~~f~~~~~i~ 229 (328)
T d1rjda_ 159 SPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYM-HNNESQLLINTIMSKFSHGLWIS 229 (328)
T ss_dssp TTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGS-CHHHHHHHHHHHHHHCSSEEEEE
T ss_pred ccccCCCCCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcC-CHHHHHHHHHHHHHhCCCceEEE
Confidence 1246788888887642 223456689999887666 44567788888877765544343
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=90.86 E-value=0.47 Score=40.33 Aligned_cols=70 Identities=23% Similarity=0.350 Sum_probs=53.1
Q ss_pred CEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----------CCCCc
Q 015534 124 KVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LPVTK 189 (405)
Q Consensus 124 ~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~ 189 (405)
+.+|--|++.| .++..+++.|+ +|+.+|.++ -++.+.+.+...+ .++.++.+|+.+.. -.-++
T Consensus 2 KValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 78 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLGG 78 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence 35688898887 45667777887 899999999 8887777777766 45888999997643 01368
Q ss_pred eeEEEEc
Q 015534 190 VDIIISE 196 (405)
Q Consensus 190 ~D~Iv~~ 196 (405)
.|++|.+
T Consensus 79 iDilVnn 85 (255)
T d1gega_ 79 FDVIVNN 85 (255)
T ss_dssp CCEEEEC
T ss_pred ccEEEec
Confidence 9999975
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.77 E-value=0.3 Score=42.14 Aligned_cols=75 Identities=21% Similarity=0.391 Sum_probs=58.7
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCC-CcEEEEEccccccc----------C
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIE----------L 185 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~----------~ 185 (405)
.+|+++|-.|++.| .++..+++.|+ +|+.+|.++ -++.+.+.+...+.. .++.++.+|+.+.. .
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 81 (272)
T d1xkqa_ 3 FSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK 81 (272)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 57899999999888 45677778887 999999999 888888878776643 46899999987642 0
Q ss_pred CCCceeEEEEc
Q 015534 186 PVTKVDIIISE 196 (405)
Q Consensus 186 ~~~~~D~Iv~~ 196 (405)
.-++.|++|.+
T Consensus 82 ~~g~iDilvnn 92 (272)
T d1xkqa_ 82 QFGKIDVLVNN 92 (272)
T ss_dssp HHSCCCEEEEC
T ss_pred HhCCceEEEeC
Confidence 12679999986
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=90.63 E-value=0.33 Score=38.63 Aligned_cols=94 Identities=15% Similarity=0.127 Sum_probs=58.0
Q ss_pred CEEEEEcCCCc--HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcC-CC-CcEE----EEEcccccccCCCCceeEEE
Q 015534 124 KVVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANG-FS-NVIT----VLKGKIEEIELPVTKVDIII 194 (405)
Q Consensus 124 ~~VLDiGcG~G--~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~-~~-~~i~----~~~~d~~~~~~~~~~~D~Iv 194 (405)
++|--||+|.. .++..|++.|. .|+.+|.++ -++.+++.-.... .+ .... .+..|..+. -..+|+|+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~~aD~ii 77 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA---VKDADVIL 77 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH---HTTCSEEE
T ss_pred CEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhH---hcCCCEEE
Confidence 57889999984 55667777877 999999998 7766554311000 00 0001 111122111 15689999
Q ss_pred EccccccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
... .......++..+...|+++..++.
T Consensus 78 i~v------~~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 78 IVV------PAIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp ECS------CGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred EEE------chhHHHHHHHHhhhccCCCCEEEE
Confidence 632 234567888889999999887663
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=90.62 E-value=0.39 Score=43.86 Aligned_cols=59 Identities=15% Similarity=0.101 Sum_probs=46.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHH-cC--CCeEEEEechH-HHHHHHHHHHHcCCC---CcEEEEEc
Q 015534 120 LFKDKVVLDVGAGTGILSLFCAK-AG--AAHVYAVECSQ-MANMAKQIVEANGFS---NVITVLKG 178 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G~l~~~la~-~g--~~~V~~vD~s~-~~~~a~~~~~~~~~~---~~i~~~~~ 178 (405)
..++.+++|||+-.|..+..+++ .+ ..+|+++|+++ ..+..++++..+... .++.++..
T Consensus 210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~n~~~~I~~~~~ 275 (395)
T d2py6a1 210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGC 275 (395)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECS
T ss_pred cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccccccceEEEEEE
Confidence 45677999999999988877765 22 46999999999 999999999887654 24665543
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.12 E-value=0.38 Score=41.48 Aligned_cols=76 Identities=24% Similarity=0.328 Sum_probs=58.8
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCC-CcEEEEEcccccccC----------
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIEL---------- 185 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~---------- 185 (405)
.+|+++|--|++.| .++..+++.|+ +|+.+|.++ -++.+.+.+...+.. .++.++.+|+.+...
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA 80 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence 46899999999988 35677777887 899999999 888877777776653 578999999876430
Q ss_pred CCCceeEEEEcc
Q 015534 186 PVTKVDIIISEW 197 (405)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (405)
.-++.|++|.+.
T Consensus 81 ~~G~iDilVnnA 92 (274)
T d1xhla_ 81 KFGKIDILVNNA 92 (274)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCceEEEeec
Confidence 125789999863
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.00 E-value=0.36 Score=41.12 Aligned_cols=75 Identities=17% Similarity=0.195 Sum_probs=55.5
Q ss_pred CCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------CC
Q 015534 122 KDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------PV 187 (405)
Q Consensus 122 ~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~~ 187 (405)
.|+++|--|++.| .++..+++.|+ +|+.+|.++ -++.+.+.+....-..++.++.+|+.+..- .-
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 80 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 5789999999887 45666777887 899999998 777666655544333578999999976430 12
Q ss_pred CceeEEEEcc
Q 015534 188 TKVDIIISEW 197 (405)
Q Consensus 188 ~~~D~Iv~~~ 197 (405)
++.|++|.+.
T Consensus 81 G~iDilVnnA 90 (254)
T d2gdza1 81 GRLDILVNNA 90 (254)
T ss_dssp SCCCEEEECC
T ss_pred CCcCeecccc
Confidence 6799999864
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=89.66 E-value=0.44 Score=40.76 Aligned_cols=76 Identities=21% Similarity=0.303 Sum_probs=58.2
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCC-CcEEEEEcccccccC----------
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIEL---------- 185 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~---------- 185 (405)
.+|+++|--|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+...+.. .++.++.+|+.+...
T Consensus 3 l~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (264)
T d1spxa_ 3 FAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 81 (264)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence 47889999999988 45677777887 899999999 888777777776543 469999999976420
Q ss_pred CCCceeEEEEcc
Q 015534 186 PVTKVDIIISEW 197 (405)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (405)
.-++.|++|.+.
T Consensus 82 ~~g~iDilvnnA 93 (264)
T d1spxa_ 82 KFGKLDILVNNA 93 (264)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCCEeeccc
Confidence 126799999863
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=89.43 E-value=0.43 Score=40.55 Aligned_cols=75 Identities=24% Similarity=0.309 Sum_probs=55.9
Q ss_pred CCCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----------C
Q 015534 120 LFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------L 185 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~ 185 (405)
..+++++|-.|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+...+ .++.++..|+.+.. -
T Consensus 7 ~lenKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~ 83 (251)
T d2c07a1 7 CGENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILT 83 (251)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 356889999998887 33555555676 999999999 8887777777665 45889999997642 0
Q ss_pred CCCceeEEEEcc
Q 015534 186 PVTKVDIIISEW 197 (405)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (405)
.-++.|++|.+.
T Consensus 84 ~~g~iDilvnna 95 (251)
T d2c07a1 84 EHKNVDILVNNA 95 (251)
T ss_dssp HCSCCCEEEECC
T ss_pred hcCCceeeeecc
Confidence 136899999863
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=89.35 E-value=0.36 Score=36.46 Aligned_cols=62 Identities=18% Similarity=0.234 Sum_probs=38.4
Q ss_pred EEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEE
Q 015534 125 VVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIIS 195 (405)
Q Consensus 125 ~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv~ 195 (405)
+++-+|+|. | .++..|.+.|. .|+.+|.++ .++.++. .+ ..++.+|..+.. ..-..+|.+++
T Consensus 2 ~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~----~~----~~~~~gd~~~~~~l~~a~i~~a~~vi~ 70 (134)
T d2hmva1 2 QFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYAS----YA----THAVIANATEENELLSLGIRNFEYVIV 70 (134)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTT----TC----SEEEECCTTCTTHHHHHTGGGCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHH----hC----CcceeeecccchhhhccCCccccEEEE
Confidence 456666654 2 23334444565 899999999 8776642 22 356778886653 12357888776
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=89.15 E-value=0.41 Score=40.78 Aligned_cols=74 Identities=24% Similarity=0.320 Sum_probs=56.0
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (405)
.+|+++|--|++.| .++..+++.|+ +|+.+|.++ -++.+.+.+...+ .++.++.+|+.+... .
T Consensus 9 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~ 85 (255)
T d1fmca_ 9 LDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISK 85 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 57899999998887 34566666777 899999998 8877777777765 458889999976420 1
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
-++.|++|.+.
T Consensus 86 ~g~iDilvnnA 96 (255)
T d1fmca_ 86 LGKVDILVNNA 96 (255)
T ss_dssp HSSCCEEEECC
T ss_pred cCCCCEeeeCC
Confidence 26799999863
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=88.52 E-value=0.48 Score=40.58 Aligned_cols=73 Identities=19% Similarity=0.307 Sum_probs=53.7
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc-----C-----C
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----P 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~ 186 (405)
.+|+++|-.|++.| .++..+++.|+ +|+.+|.++ -++.+.+.+... +++.++..|+.+.. + .
T Consensus 4 L~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (268)
T d2bgka1 4 LQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSP---DVISFVHCDVTKDEDVRNLVDTTIAK 79 (268)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCC---CceEEEEccCCCHHHHHHHHHHHHHH
Confidence 57899999999988 34666777887 899999998 776666555432 45888999987642 0 1
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
-++.|++|.+.
T Consensus 80 ~g~iD~lVnnA 90 (268)
T d2bgka1 80 HGKLDIMFGNV 90 (268)
T ss_dssp HSCCCEEEECC
T ss_pred cCCcceecccc
Confidence 26799999753
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=88.51 E-value=0.77 Score=38.93 Aligned_cols=71 Identities=15% Similarity=0.201 Sum_probs=54.8
Q ss_pred CCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----------CCCC
Q 015534 123 DKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LPVT 188 (405)
Q Consensus 123 ~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~ 188 (405)
|+++|--|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+...+ .++.++.+|+.+.. -.-+
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 78 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVERYG 78 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 678899998887 35677777887 899999999 8887777777766 45899999987643 0136
Q ss_pred ceeEEEEc
Q 015534 189 KVDIIISE 196 (405)
Q Consensus 189 ~~D~Iv~~ 196 (405)
+.|++|.+
T Consensus 79 ~iDilVnn 86 (257)
T d2rhca1 79 PVDVLVNN 86 (257)
T ss_dssp SCSEEEEC
T ss_pred CCCEEEec
Confidence 89999985
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=88.33 E-value=0.77 Score=38.86 Aligned_cols=74 Identities=22% Similarity=0.304 Sum_probs=53.7
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHH-HHHHHHHHcCCCCcEEEEEccccccc-----C-----
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MAN-MAKQIVEANGFSNVITVLKGKIEEIE-----L----- 185 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~-~a~~~~~~~~~~~~i~~~~~d~~~~~-----~----- 185 (405)
.+|+++|--|++.| .++..+++.|+ +|+.+|.++ -++ .+++.....+ .++.++.+|+.+.. +
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAVKE 79 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 46899999999988 45777788887 899999988 554 4444445545 45888999987642 0
Q ss_pred CCCceeEEEEcc
Q 015534 186 PVTKVDIIISEW 197 (405)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (405)
.-++.|++|.+.
T Consensus 80 ~~g~iDiLVnnA 91 (251)
T d1vl8a_ 80 KFGKLDTVVNAA 91 (251)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 125799999863
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=88.31 E-value=0.75 Score=41.36 Aligned_cols=71 Identities=14% Similarity=0.232 Sum_probs=46.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-------CCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCcee
Q 015534 121 FKDKVVLDVGAGTGILSLFCAKA-G-------AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~l~~~la~~-g-------~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (405)
.+...|+|+|+|+|.++.-+.+. . ...++.+|.|+ +.+.-++.+.. . .++.++ .++.+++ ...-
T Consensus 78 ~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~--~-~~i~w~-~~~~~~~---~~~g 150 (365)
T d1zkda1 78 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG--I-RNIHWH-DSFEDVP---EGPA 150 (365)
T ss_dssp CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT--C-SSEEEE-SSGGGSC---CSSE
T ss_pred CccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc--c-ccceec-cChhhcc---cCCe
Confidence 34468999999999998777662 1 23689999999 77666665542 2 346544 3454443 2346
Q ss_pred EEEEccc
Q 015534 192 IIISEWM 198 (405)
Q Consensus 192 ~Iv~~~~ 198 (405)
+|+|+-+
T Consensus 151 ~iiaNE~ 157 (365)
T d1zkda1 151 VILANEY 157 (365)
T ss_dssp EEEEESS
T ss_pred EEEeccc
Confidence 7888544
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.30 E-value=0.54 Score=39.69 Aligned_cols=70 Identities=24% Similarity=0.202 Sum_probs=51.0
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc------CCCCce
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTKV 190 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~~ 190 (405)
..|+++|-.|++.| .++..+++.|+ +|+.+|.++ -++.+.+.. ..+..+..|+.+.. -.-++.
T Consensus 5 L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~~~g~i 77 (244)
T d1pr9a_ 5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVREC------PGIEPVCVDLGDWEATERALGSVGPV 77 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHhCCc
Confidence 57899999999988 55677777887 899999998 665544322 23677888886642 123689
Q ss_pred eEEEEcc
Q 015534 191 DIIISEW 197 (405)
Q Consensus 191 D~Iv~~~ 197 (405)
|++|.+.
T Consensus 78 DilVnnA 84 (244)
T d1pr9a_ 78 DLLVNNA 84 (244)
T ss_dssp CEEEECC
T ss_pred eEEEecc
Confidence 9999853
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=88.22 E-value=0.62 Score=39.72 Aligned_cols=73 Identities=23% Similarity=0.180 Sum_probs=56.4
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc--------C-C-
Q 015534 121 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--------L-P- 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~---l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~-~- 186 (405)
.+|+++|--|++.|+ ++..+++.|+ +|+.+|.++ -++.+.+.+...+ .++..+..|+.+.. . .
T Consensus 6 LkgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d1xq1a_ 6 LKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSSM 82 (259)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CceEEEeccCCCHHHHHHHHHHHHHH
Confidence 478999999999884 6777788888 899999998 7777777676665 35889999987532 0 0
Q ss_pred -CCceeEEEEc
Q 015534 187 -VTKVDIIISE 196 (405)
Q Consensus 187 -~~~~D~Iv~~ 196 (405)
.+..|++|.+
T Consensus 83 ~~g~idilvnn 93 (259)
T d1xq1a_ 83 FGGKLDILINN 93 (259)
T ss_dssp HTTCCSEEEEE
T ss_pred hCCCccccccc
Confidence 2679999986
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=87.89 E-value=0.49 Score=40.32 Aligned_cols=74 Identities=16% Similarity=0.254 Sum_probs=54.3
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH--HHHHHHHHHHHcCCCCcEEEEEccccccc----------C
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ--MANMAKQIVEANGFSNVITVLKGKIEEIE----------L 185 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~--~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~ 185 (405)
..|+++|--|++.| .++..+++.|+ +|+.+|.++ ..+.+++..+..+ .++.++.+|+.+.. -
T Consensus 7 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (260)
T d1h5qa_ 7 FVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFG--VKTKAYQCDVSNTDIVTKTIQQIDA 83 (260)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhC--CceEEEEccCCCHHHHHHHHHHHHH
Confidence 57899999998887 45677777888 899999987 4455555555555 45889999987643 0
Q ss_pred CCCceeEEEEcc
Q 015534 186 PVTKVDIIISEW 197 (405)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (405)
.-++.|++|.+.
T Consensus 84 ~~g~iDilVnnA 95 (260)
T d1h5qa_ 84 DLGPISGLIANA 95 (260)
T ss_dssp HSCSEEEEEECC
T ss_pred HhCCCcEecccc
Confidence 136899999864
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=87.64 E-value=0.82 Score=39.47 Aligned_cols=75 Identities=20% Similarity=0.327 Sum_probs=54.2
Q ss_pred CCCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHH-HHHHHHcCCCCcEEEEEccccccc----------
Q 015534 120 LFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMA-KQIVEANGFSNVITVLKGKIEEIE---------- 184 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a-~~~~~~~~~~~~i~~~~~d~~~~~---------- 184 (405)
..+|+++|--|++.| .++..+++.|+ +|+.+|.+. -++.+ ++.....+ .++.++..|+.+..
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~ 98 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTG--NKVHAIQCDVRDPDMVQNTVSELI 98 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHS--SCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcC--CceEEEEecccChHHHHHHhhhhh
Confidence 357899999999888 55667777887 999999998 55544 44444444 45888999987643
Q ss_pred CCCCceeEEEEcc
Q 015534 185 LPVTKVDIIISEW 197 (405)
Q Consensus 185 ~~~~~~D~Iv~~~ 197 (405)
...+..|+++.+.
T Consensus 99 ~~~g~iDilvnnA 111 (294)
T d1w6ua_ 99 KVAGHPNIVINNA 111 (294)
T ss_dssp HHTCSCSEEEECC
T ss_pred hhccccchhhhhh
Confidence 1136899999853
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.51 E-value=0.77 Score=38.61 Aligned_cols=69 Identities=20% Similarity=0.172 Sum_probs=49.5
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc------CCCCce
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTKV 190 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~~ 190 (405)
..|+++|--|++.| .++..+++.|+ +|+.+|.++ -++.+.+.. ..+..+..|+.+.. -.-++.
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~~~g~i 75 (242)
T d1cyda_ 3 FSGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKEC------PGIEPVCVDLGDWDATEKALGGIGPV 75 (242)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 47899999999888 35677777887 999999988 554433322 23677888887643 123689
Q ss_pred eEEEEc
Q 015534 191 DIIISE 196 (405)
Q Consensus 191 D~Iv~~ 196 (405)
|++|.+
T Consensus 76 DilVnn 81 (242)
T d1cyda_ 76 DLLVNN 81 (242)
T ss_dssp SEEEEC
T ss_pred eEEEEC
Confidence 999985
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.39 E-value=1.4 Score=38.15 Aligned_cols=78 Identities=17% Similarity=0.170 Sum_probs=55.8
Q ss_pred CCCCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcC---CCCcEEEEEcccccccC------
Q 015534 119 FLFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANG---FSNVITVLKGKIEEIEL------ 185 (405)
Q Consensus 119 ~~~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~---~~~~i~~~~~d~~~~~~------ 185 (405)
...+|+++|--|++.| .++..+++.|+ +|+.+|.++ -++.+.+.+.... ...++.++.+|+.+...
T Consensus 8 g~L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~ 86 (297)
T d1yxma1 8 GLLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVK 86 (297)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHH
Confidence 3468899999999988 34566777887 899999998 7666655554431 22468899999876430
Q ss_pred ----CCCceeEEEEcc
Q 015534 186 ----PVTKVDIIISEW 197 (405)
Q Consensus 186 ----~~~~~D~Iv~~~ 197 (405)
.-++.|++|.+.
T Consensus 87 ~~~~~~G~iDiLVnnA 102 (297)
T d1yxma1 87 STLDTFGKINFLVNNG 102 (297)
T ss_dssp HHHHHHSCCCEEEECC
T ss_pred HHHHHhCCeEEEEeec
Confidence 126799999863
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=86.10 E-value=2.1 Score=33.68 Aligned_cols=81 Identities=15% Similarity=0.173 Sum_probs=49.9
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHH-HHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccCC
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTGIL-SLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G~l-~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (405)
-|...|.......++++||-+|||.-.- ....+..+.++|+.+.-+. -++...+.+...+ .+.....+.. .
T Consensus 4 Gf~~~l~~~~~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~---~~~~~~~~~~----~ 76 (171)
T d1p77a1 4 GLVTDLQRLNWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYG---NIQAVSMDSI----P 76 (171)
T ss_dssp HHHHHHHHTTCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGS---CEEEEEGGGC----C
T ss_pred HHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhcc---ccchhhhccc----c
Confidence 3455565544456889999999987422 2222234567999999988 6555555554332 2444443322 2
Q ss_pred CCceeEEEEc
Q 015534 187 VTKVDIIISE 196 (405)
Q Consensus 187 ~~~~D~Iv~~ 196 (405)
...+|+||..
T Consensus 77 ~~~~diiIN~ 86 (171)
T d1p77a1 77 LQTYDLVINA 86 (171)
T ss_dssp CSCCSEEEEC
T ss_pred ccccceeeec
Confidence 3789999985
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.18 E-value=1.1 Score=37.80 Aligned_cols=72 Identities=11% Similarity=0.096 Sum_probs=53.2
Q ss_pred CCCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------
Q 015534 120 LFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---------- 185 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------- 185 (405)
..+|+++|--|++.| .++..+++.|+ +|+.+|.++ -++.+.+.+. +++.++.+|+.+..-
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~ 76 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELA-----DAARYVHLDVTQPAQWKAAVDTAVT 76 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTG-----GGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhh-----CcceEEEeecCCHHHHHHHHHHHHH
Confidence 357899999999988 45677778888 899999998 6665544432 468889999876420
Q ss_pred CCCceeEEEEcc
Q 015534 186 PVTKVDIIISEW 197 (405)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (405)
.-+..|++|.+.
T Consensus 77 ~~g~idilinnA 88 (244)
T d1nffa_ 77 AFGGLHVLVNNA 88 (244)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCeEEEECC
Confidence 125799999853
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.13 E-value=0.62 Score=39.95 Aligned_cols=73 Identities=16% Similarity=0.177 Sum_probs=52.1
Q ss_pred CCEE-EEEcCCCcH---HHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------CC
Q 015534 123 DKVV-LDVGAGTGI---LSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------PV 187 (405)
Q Consensus 123 ~~~V-LDiGcG~G~---l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~~ 187 (405)
|++| |-=|++.|+ ++..+++.+..+|+.++.++ -++.+.+.+...+. ++.++..|+.+..- ..
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dvs~~~sv~~~~~~~~~~~ 79 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRKEY 79 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEEecCCHHHHHHHHHHHHHhc
Confidence 5566 566777763 34556665445999999999 88888777777663 48899999977531 12
Q ss_pred CceeEEEEcc
Q 015534 188 TKVDIIISEW 197 (405)
Q Consensus 188 ~~~D~Iv~~~ 197 (405)
++.|++|.+.
T Consensus 80 g~iDiLVnNA 89 (275)
T d1wmaa1 80 GGLDVLVNNA 89 (275)
T ss_dssp SSEEEEEECC
T ss_pred CCcEEEEEcC
Confidence 6899999874
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=84.68 E-value=1.1 Score=38.04 Aligned_cols=75 Identities=21% Similarity=0.247 Sum_probs=55.3
Q ss_pred CCCCCEEEEEcCCCc---HHHHHHHHcCCCeEEE-EechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----------
Q 015534 120 LFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYA-VECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---------- 184 (405)
Q Consensus 120 ~~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~-vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---------- 184 (405)
...|++||-.|++.| .++..+++.|+ +|+. ...++ .++.+.+.+...+ .++.++.+|+.+..
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~ 79 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAV 79 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcC--CCceEecCCCCCHHHHHHHHHHHH
Confidence 357899999998877 56777777888 5655 45666 7888888888777 45889999997632
Q ss_pred CCCCceeEEEEcc
Q 015534 185 LPVTKVDIIISEW 197 (405)
Q Consensus 185 ~~~~~~D~Iv~~~ 197 (405)
...+..|++|.+.
T Consensus 80 ~~~g~idilinna 92 (259)
T d1ja9a_ 80 SHFGGLDFVMSNS 92 (259)
T ss_dssp HHHSCEEEEECCC
T ss_pred HHcCCCcEEEecc
Confidence 1136799999863
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=84.21 E-value=1.3 Score=37.37 Aligned_cols=73 Identities=15% Similarity=0.206 Sum_probs=54.6
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (405)
.+|+++|--|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+.. +.++.++.+|+.+... .
T Consensus 4 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (251)
T d1zk4a1 4 LDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGT---PDQIQFFQHDSSDEDGWTKLFDATEKA 79 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCC---CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 57899999998887 45667777888 899999998 77766665532 3568999999976430 1
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
-++.|++|.+.
T Consensus 80 ~G~iDiLVnnA 90 (251)
T d1zk4a1 80 FGPVSTLVNNA 90 (251)
T ss_dssp HSSCCEEEECC
T ss_pred hCCceEEEecc
Confidence 26799999863
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=84.20 E-value=1.5 Score=32.67 Aligned_cols=85 Identities=11% Similarity=0.141 Sum_probs=52.8
Q ss_pred EEEEcCCCcHHHHHHHHc-CCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEEcccc
Q 015534 126 VLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIISEWMG 199 (405)
Q Consensus 126 VLDiGcG~G~l~~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv~~~~~ 199 (405)
|+- ||.|..+..+++. -...|+.+|.++ .++.++. .+ +.++.+|..+.. ..-.+++.+++..
T Consensus 3 ivI--~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~----~~----~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~-- 70 (129)
T d2fy8a1 3 VVI--CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR----SG----ANFVHGDPTRVSDLEKANVRGARAVIVNL-- 70 (129)
T ss_dssp EEE--ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH----TT----CEEEESCTTSHHHHHHTTCTTCSEEEECC--
T ss_pred EEE--ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh----cC----ccccccccCCHHHHHHhhhhcCcEEEEec--
Confidence 444 4567788888882 233788999999 8766543 23 688999987643 2246788888732
Q ss_pred ccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
........+-...+.+.|...++
T Consensus 71 ----~~d~~n~~~~~~~r~~~~~~~ii 93 (129)
T d2fy8a1 71 ----ESDSETIHCILGIRKIDESVRII 93 (129)
T ss_dssp ----SSHHHHHHHHHHHHHHCSSSCEE
T ss_pred ----cchhhhHHHHHHHHHHCCCceEE
Confidence 22222233334456678877655
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=83.33 E-value=1.3 Score=37.82 Aligned_cols=74 Identities=26% Similarity=0.364 Sum_probs=55.7
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEech-H-HHHHHHHHHHHcCCCCcEEEEEccccccc----------C
Q 015534 121 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECS-Q-MANMAKQIVEANGFSNVITVLKGKIEEIE----------L 185 (405)
Q Consensus 121 ~~~~~VLDiGcG~G~---l~~~la~~g~~~V~~vD~s-~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~ 185 (405)
.+|+++|-.|++.|+ ++..+++.|+ +|+.+|.+ + .++.+.+.+...+ .++.++.+|+.+.. -
T Consensus 16 L~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~ 92 (272)
T d1g0oa_ 16 LEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVK 92 (272)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhC--CceeeEeCCCCCHHHHHHHHHHHHH
Confidence 578999999999884 6777888888 89998876 4 6777776677766 35889999987642 0
Q ss_pred CCCceeEEEEcc
Q 015534 186 PVTKVDIIISEW 197 (405)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (405)
..+..|++|.+.
T Consensus 93 ~~g~idilV~na 104 (272)
T d1g0oa_ 93 IFGKLDIVCSNS 104 (272)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCCcccccc
Confidence 126789999853
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=83.32 E-value=0.16 Score=40.01 Aligned_cols=90 Identities=12% Similarity=0.036 Sum_probs=53.4
Q ss_pred CEEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcE--EEEEcccccccCCCCceeEEEEccc
Q 015534 124 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVI--TVLKGKIEEIELPVTKVDIIISEWM 198 (405)
Q Consensus 124 ~~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i--~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (405)
.+|+-||+|. | .++..|++.|. .|+.++.++ -..... ..+..... ..+..+..+ ....+|+|+...
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~~~D~iii~v- 71 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSVN----LVETDGSIFNESLTANDPD---FLATSDLLLVTL- 71 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEEE----EECTTSCEEEEEEEESCHH---HHHTCSEEEECS-
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHhhhhc----cccCCccccccccccchhh---hhcccceEEEee-
Confidence 4789999997 4 66777778877 999998876 222110 00110000 011111111 125789999732
Q ss_pred cccccChhhHHHHHHHHHhcccCCcEEEe
Q 015534 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.......++..+...+.++..++.
T Consensus 72 -----ka~~~~~~~~~l~~~~~~~~~Iv~ 95 (167)
T d1ks9a2 72 -----KAWQVSDAVKSLASTLPVTTPILL 95 (167)
T ss_dssp -----CGGGHHHHHHHHHTTSCTTSCEEE
T ss_pred -----cccchHHHHHhhccccCcccEEee
Confidence 224567788888899998887764
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=83.15 E-value=1.2 Score=31.67 Aligned_cols=65 Identities=12% Similarity=0.229 Sum_probs=41.6
Q ss_pred CCCCEEEEEcC-CCc--HHHHHHHHcCCCeEEEEechH--HHHHHHHHHHHcCCCCcEEEEEcccccccCCCCceeEEEE
Q 015534 121 FKDKVVLDVGA-GTG--ILSLFCAKAGAAHVYAVECSQ--MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (405)
Q Consensus 121 ~~~~~VLDiGc-G~G--~l~~~la~~g~~~V~~vD~s~--~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (405)
...++|.=||. |+| .++..+.+.|. .|+|.|... ..+. +...| +++..+...... ...|+||.
T Consensus 6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~~~~~----L~~~G----i~v~~g~~~~~i---~~~d~vV~ 73 (96)
T d1p3da1 6 RRVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGVVTQR----LAQAG----AKIYIGHAEEHI---EGASVVVV 73 (96)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSHHHHH----HHHTT----CEEEESCCGGGG---TTCSEEEE
T ss_pred hhCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCChhhhH----HHHCC----CeEEECCccccC---CCCCEEEE
Confidence 45568888873 455 55677777888 999999864 4433 33445 455555554432 45788887
Q ss_pred cc
Q 015534 196 EW 197 (405)
Q Consensus 196 ~~ 197 (405)
..
T Consensus 74 S~ 75 (96)
T d1p3da1 74 SS 75 (96)
T ss_dssp CT
T ss_pred CC
Confidence 43
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=83.15 E-value=0.36 Score=41.28 Aligned_cols=53 Identities=17% Similarity=0.146 Sum_probs=38.7
Q ss_pred EEEEcccccc--cCCCCceeEEEEccccccc---------cChhhHHHHHHHHHhcccCCcEEEe
Q 015534 174 TVLKGKIEEI--ELPVTKVDIIISEWMGYFL---------LFENMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 174 ~~~~~d~~~~--~~~~~~~D~Iv~~~~~~~l---------~~~~~~~~~l~~~~~~LkpgG~lip 227 (405)
.++.+|..++ .++++++|+|+.++. |.. .+...+...+.++.|+|||+|.++.
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPP-Yn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~ 69 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPP-YNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAI 69 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCC-SBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred eEEechHHHHHhhCcCCCccEEEECCC-CCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEE
Confidence 4677887765 367899999999874 322 1123456778889999999998874
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=82.72 E-value=1.5 Score=37.10 Aligned_cols=74 Identities=24% Similarity=0.276 Sum_probs=54.8
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEech-H-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECS-Q-MANMAKQIVEANGFSNVITVLKGKIEEIEL---------- 185 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s-~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------- 185 (405)
.+|+++|--|++.| .++..+++.|+ +|+.++.+ + .++.+.+.+...+ .++.++..|+.+...
T Consensus 5 L~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (261)
T d1geea_ 5 LEGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAIK 81 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 47889999999988 45667777887 89999876 4 6676666677665 458889999976420
Q ss_pred CCCceeEEEEcc
Q 015534 186 PVTKVDIIISEW 197 (405)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (405)
.-++.|++|.+.
T Consensus 82 ~~G~iDiLVnnA 93 (261)
T d1geea_ 82 EFGKLDVMINNA 93 (261)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCCEeeccc
Confidence 125799999863
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.67 E-value=1.5 Score=37.19 Aligned_cols=74 Identities=23% Similarity=0.320 Sum_probs=52.9
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (405)
.+|+++|-.|+++| .++..+++.|+ +|+.++.++ -++.+.+....... ..+.++..|..+... .
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~ 89 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGA-ASAHYIAGTMEDMTFAEQFVAQAGKL 89 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTC-SEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhhhhc-ccchhhhhhhhhHHHHHHHHHHHHHH
Confidence 57899999999998 46777778887 999999998 77666555443332 457778877765321 1
Q ss_pred CCceeEEEEc
Q 015534 187 VTKVDIIISE 196 (405)
Q Consensus 187 ~~~~D~Iv~~ 196 (405)
.+..|+++.+
T Consensus 90 ~g~~~~li~n 99 (269)
T d1xu9a_ 90 MGGLDMLILN 99 (269)
T ss_dssp HTSCSEEEEC
T ss_pred hCCccccccc
Confidence 2568888875
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=81.55 E-value=2.7 Score=33.26 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=37.2
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCc--HHHHHHHHcCCCeEEEEechH-HHHHHHHH
Q 015534 109 SYQNVIYQNKFLFKDKVVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQ-MANMAKQI 163 (405)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDiGcG~G--~l~~~la~~g~~~V~~vD~s~-~~~~a~~~ 163 (405)
-|.+++........+++||-+|||.- .....+++.|.++++.++.++ .++.+...
T Consensus 4 Gf~~~l~~~~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l 61 (182)
T d1vi2a1 4 GHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAF 61 (182)
T ss_dssp HHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHH
T ss_pred HHHHHHHHcCCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHH
Confidence 45566665544567899999999842 223445557888999999876 66555443
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=81.52 E-value=0.44 Score=40.07 Aligned_cols=53 Identities=11% Similarity=0.025 Sum_probs=37.6
Q ss_pred EEEEcccccc--cCCCCceeEEEEccccccccC---------h---hhHHHHHHHHHhcccCCcEEEe
Q 015534 174 TVLKGKIEEI--ELPVTKVDIIISEWMGYFLLF---------E---NMLNTVLYARDKWLVDDGIVLP 227 (405)
Q Consensus 174 ~~~~~d~~~~--~~~~~~~D~Iv~~~~~~~l~~---------~---~~~~~~l~~~~~~LkpgG~lip 227 (405)
+++++|..++ .++++++|+|++++. |.... + ..+...+.++.++|+|||.++.
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPP-Y~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~ 72 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPP-YNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYI 72 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCC-CSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCC-CCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccc
Confidence 4788888774 367799999999874 32211 1 2244677889999999998763
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.90 E-value=1.9 Score=36.29 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=51.2
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (405)
..|+++|--|++.| .++..+++.|+ +|+.+|.++ .++.+.+.. .++.++.+|+.+... .
T Consensus 4 l~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~------~~~~~~~~Dvs~~~~v~~~~~~~~~~ 76 (250)
T d1ydea1 4 YAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQEL------PGAVFILCDVTQEDDVKTLVSETIRR 76 (250)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC------TTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhc------CCCeEEEccCCCHHHHHHHHHHHHHh
Confidence 57899999999988 45677777887 899999998 665544332 247888999876420 1
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
-++.|++|.+.
T Consensus 77 ~g~iDilVnnA 87 (250)
T d1ydea1 77 FGRLDCVVNNA 87 (250)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEecc
Confidence 26799999864
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=80.89 E-value=1.7 Score=36.40 Aligned_cols=71 Identities=23% Similarity=0.245 Sum_probs=52.1
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----------CC
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LP 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 186 (405)
.+|+++|--|++.| .++..+++.|+ +|+.+|.++ .++...+.+. .++..+..|+.+.. -.
T Consensus 2 l~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (243)
T d1q7ba_ 2 FEGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLG-----ANGKGLMLNVTDPASIESVLEKIRAE 75 (243)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecCHHHhhhhhhhhhcc
Confidence 46889999999887 45667777887 999999998 7766655443 34778888887642 01
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
-++.|++|.+.
T Consensus 76 ~g~iDilVnnA 86 (243)
T d1q7ba_ 76 FGEVDILVNNA 86 (243)
T ss_dssp TCSCSEEEECC
T ss_pred cCCcceehhhh
Confidence 36899999863
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=80.88 E-value=1.5 Score=37.00 Aligned_cols=71 Identities=15% Similarity=0.128 Sum_probs=51.7
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (405)
.+|+++|--|++.| .++..+++.|+ +|+.+|.++ -++...+. +..++.++.+|+.+..- .
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 76 (254)
T d1hdca_ 3 LSGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARE-----LGDAARYQHLDVTIEEDWQRVVAYAREE 76 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHT-----TGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHH-----hCCceEEEEcccCCHHHHHHHHHHHHHH
Confidence 47899999999998 45777777888 899999988 55443322 23568999999976420 1
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
-++.|++|.+.
T Consensus 77 ~g~iDilVnnA 87 (254)
T d1hdca_ 77 FGSVDGLVNNA 87 (254)
T ss_dssp HSCCCEEEECC
T ss_pred cCCccEEEecC
Confidence 25799999853
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=80.83 E-value=2.2 Score=32.61 Aligned_cols=91 Identities=11% Similarity=0.030 Sum_probs=50.4
Q ss_pred EEEEEcCCC-c-HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEccccccc----CCCCceeEEEEcc
Q 015534 125 VVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIISEW 197 (405)
Q Consensus 125 ~VLDiGcG~-G-~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv~~~ 197 (405)
.|+-+|+|. | .++..|.+.|. .|+.+|.++ ......+.... ..+.++.+|..+.. ..-+.+|.|++..
T Consensus 5 HiII~G~g~~g~~l~~~L~~~~~-~v~vId~d~~~~~~~~~~~~~----~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~ 79 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLG----DNADVIPGDSNDSSVLKKAGIDRCRAILALS 79 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHC----TTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred EEEEECCCHHHHHHHHHHHHcCC-CEEEEeccchhHHHHHHHhhc----CCcEEEEccCcchHHHHHhccccCCEEEEcc
Confidence 477777754 2 22333334554 899999887 44333333332 23789999987653 2236789998732
Q ss_pred ccccccChhhHHHHHHHHHhcccCCcEEE
Q 015534 198 MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (405)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (405)
.............+-+.|...++
T Consensus 80 ------~~d~~n~~~~~~~r~~~~~~~ii 102 (153)
T d1id1a_ 80 ------DNDADNAFVVLSAKDMSSDVKTV 102 (153)
T ss_dssp ------SCHHHHHHHHHHHHHHTSSSCEE
T ss_pred ------ccHHHHHHHHHHHHHhCCCCceE
Confidence 11222222333345567776655
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=80.36 E-value=1.9 Score=36.30 Aligned_cols=71 Identities=15% Similarity=0.232 Sum_probs=51.9
Q ss_pred CCCCEEEEEcCCCc---HHHHHHHHcCCCeEEEEechH-HHHHHHHHHHHcCCCCcEEEEEcccccccC----------C
Q 015534 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (405)
Q Consensus 121 ~~~~~VLDiGcG~G---~l~~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (405)
.+|+++|--|++.| .++..+++.|+ +|+.+|.++ .++.+.+.+ + .++.++.+|+.+... .
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~---~--~~~~~~~~Dvt~~~~v~~~~~~~~~~ 76 (256)
T d1k2wa_ 3 LDGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEI---G--PAACAIALDVTDQASIDRCVAELLDR 76 (256)
T ss_dssp TTTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHH---C--TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---C--CceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 46889999999888 45677777887 899999998 665544433 3 458889999876430 1
Q ss_pred CCceeEEEEcc
Q 015534 187 VTKVDIIISEW 197 (405)
Q Consensus 187 ~~~~D~Iv~~~ 197 (405)
-++.|++|.+.
T Consensus 77 ~g~iDilVnnA 87 (256)
T d1k2wa_ 77 WGSIDILVNNA 87 (256)
T ss_dssp HSCCCEEEECC
T ss_pred hCCccEEEeec
Confidence 26799999863
|