Citrus Sinensis ID: 015539

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-----
Protein Sequence
MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALRPGPPPGSKGKKPKSFSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMKPKKGFPFSQNGIGKKPLGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASDGESGNN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccEEEEEEEcccccccEEEEEcccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEEEEEccccccccEEEEEEcccccccEEEEEcccccHHHcEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mdyqlsdssgtdddlppshhnrfqrgvrptgngrsavigsaslprmqndmATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRkasglqpgmpsipqpvhdpapsptvsasrkktktsqsvaslstgapspgmhpsvqpsssalrpgpppgskgkkpksfstglagrgqvanrgssgafpangpseaatynpligrkvwtrwpednhfyeavitdynpnegrhaLVYDINTADETWewvnlkeispedikwegdepgisrkggrpgpgrgtkkpltrgggvsgagrgrgtmkpkkgfpfsqngigkkplgdieILHTETLIKEVEKVFaanhpdptdVEKAKRVLKEQELALVNAIAKledasdgesgnn
Flexible Loop (DISEMBL)
mdyqlsdssgtdddlppshhnrfqrgvrptgngRSAVIGSASLPRMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRkelrvsdeehrellskvnaddiiLRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSasrkktktsqsvaslstgapspgmhPSVQPSSSALRPGPPPGSKGKKPKSFSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNlkeispedikwegdepgisrkggrpgpgrgtkkpltrgggvsgagrgrgtmkpkkgfpfsqngigkkplGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIakledasdgesgnn
Low Complexity Region (SEG)
MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALRpgpppgskgkkpksFSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISrkggrpgpgrgtkkpLTrgggvsgagrgrgTMKPKKGFPFSQNGIGKKPLGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASDGESGNN
Disordered region (IsUnstruct)
*************************************************************YSSVLRAFKAQSDAITWEKESLITELRK***********LLSKVNADDIILRIREWR*********************************************************************************************************TYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP*************************************************************PLGDIEILHTETLIKEVEKVFAA*******************LALVNAI**************
Disordered Region (DISOPRED)
*****************************************************IHSVEQDAYSSVLRAFKAQ**************LRK*****************************************************************************************************************************************PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPED**************************************************************************************************************************
Disordered Region (DISEMBL)
****************PSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASGLQPGMPSIPQP***************************************************************TGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMKPKKGFPFSQNGIGKKPLGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLE**********
Disordered Region (DISPRO)
*************DLPPSH********************SASL*RMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA*******************************************************************************************************TYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISR************************************************LGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLED*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLxxxxxxxxxxxxxxxxxxxxxVNADDIILRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALRPGPPPGSKGKKPKSFSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMKPKKGFPFSQNGIGKKPLGDIEILHTETLIKEVEKVFAANHPDPTDxxxxxxxxxxxxxxxxxxxxxLEDASDGESGNN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
224057174	399	predicted protein [Populus trichocarpa]	0.977	0.992	0.764	1e-170
297746393	446	unnamed protein product [Vitis vinifera]	0.987	0.896	0.725	1e-165
225435596	449	PREDICTED: uncharacterized protein LOC10	0.987	0.890	0.720	1e-164
255544742	402	conserved hypothetical protein [Ricinus	0.975	0.982	0.764	1e-163
30684221	397	Emsy N Terminus and plant Tudor-like dom	0.962	0.982	0.692	1e-150
7630058	414	putative protein [Arabidopsis thaliana]	0.958	0.937	0.691	1e-149
449502209	418	PREDICTED: uncharacterized protein LOC10	0.987	0.956	0.683	1e-148
449462597	418	PREDICTED: uncharacterized protein LOC10	0.987	0.956	0.681	1e-148
297811421	398	emsy N terminus domain-containing protei	0.965	0.982	0.690	1e-146
359487460	424	PREDICTED: uncharacterized protein LOC10	0.975	0.931	0.669	1e-146

>gi|224057174|ref|XP_002299156.1| predicted protein [Populus trichocarpa] gi|222846414|gb|EEE83961.1| predicted protein [Populus trichocarpa]

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 312/408 (76%), Positives = 344/408 (84%), Gaps = 12/408 (2%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQD 60
           MDY+LSDSSGTDDDLPP+H NRFQ G R  GNGRSAV G+AS PR+ +DM TQIH++EQ+
Sbjct: 1   MDYELSDSSGTDDDLPPTHRNRFQSGARTAGNGRSAVGGAASQPRLHSDMETQIHNIEQE 60

Query: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120
           AY+SVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELL++VNADD+I RIREWRKA
Sbjct: 61  AYTSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLARVNADDMIRRIREWRKA 120

Query: 121 SGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALR 180
           +G+QP MPS  QP HDP PSPTVS SRKK KTSQSVASLS   PSP +HPS+QPS+SALR
Sbjct: 121 NGIQPSMPSTAQPSHDPIPSPTVSGSRKKQKTSQSVASLSMVVPSPVLHPSMQPSTSALR 180

Query: 181 PGPPPGSKGKKPKS-FSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPE 239
            GPPPGS  KKPKS  STGL+ R Q ANRGSSG F  N          LIG+KVWTRWPE
Sbjct: 181 HGPPPGSGNKKPKSQRSTGLSSRAQAANRGSSGVFATND---------LIGKKVWTRWPE 231

Query: 240 DNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGR 299
           DNHFYEAVITDYNP EGRHALVYDINT DETWEWVNLKEISPEDI+WEG+EPG+ R+GGR
Sbjct: 232 DNHFYEAVITDYNPVEGRHALVYDINTGDETWEWVNLKEISPEDIRWEGEEPGLFRRGGR 291

Query: 300 PGPGRGTKKPLTRGGGVSGAGRGRGTMK--PKKGFPFSQNGIGKKPLGDIEILHTETLIK 357
           PGPGRG KK + RGG V  AGRGRGT K   KK FP  QNGIGKK +GDIEILHT TLIK
Sbjct: 292 PGPGRGNKKAIARGGAVVTAGRGRGTTKGQSKKDFPLIQNGIGKKAMGDIEILHTNTLIK 351

Query: 358 EVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASDGESGNN 405
           EVEKVF A+HPDP ++EKAK+ L+EQE ALVNAIA+LE+ASDGESGNN
Sbjct: 352 EVEKVFGASHPDPLEIEKAKKALEEQEQALVNAIARLEEASDGESGNN 399

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746393|emb|CBI16449.3| unnamed protein product [Vitis vinifera]

 Score =  587 bits (1512), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 294/405 (72%), Positives = 331/405 (81%), Gaps = 5/405 (1%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQD 60
           MDY LSDSSGTDDDLPPSH NRF RG R +GNGRS V+GSA  PRM  DM  QIH +EQ+
Sbjct: 1   MDYGLSDSSGTDDDLPPSHQNRFSRGGRASGNGRSGVLGSAPFPRMHGDMEAQIHHIEQE 60

Query: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120
           AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLS+VNADDII  IREWRK 
Sbjct: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSRVNADDIIRSIREWRKG 120

Query: 121 SGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALR 180
            GLQ GM +  QPVH+  PSPTVSASRKK KTSQS+ASLS GAPSP +HP++QPSSSAL+
Sbjct: 121 GGLQHGMAA--QPVHESIPSPTVSASRKKQKTSQSIASLSLGAPSPALHPTMQPSSSALK 178

Query: 181 PGPPPGSKGKKPKSF-STGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPE 239
             P P SK KK K + S GL GR Q+ANRGSSGAF  N  +E  TY+PLIG+KVWTRWPE
Sbjct: 179 HAPTPRSKSKKTKPYPSAGLTGRPQLANRGSSGAFVGNEAAEGTTYDPLIGKKVWTRWPE 238

Query: 240 DNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGR 299
           DNHFYEAVITDYNP EGRHALVYDINT +ETWEWVNLKEISPEDI+WEGDE G+SR+G R
Sbjct: 239 DNHFYEAVITDYNPVEGRHALVYDINTTNETWEWVNLKEISPEDIRWEGDESGMSRRGSR 298

Query: 300 PGPGRGTKKPLTRGGGVSGAGRGRGTMK--PKKGFPFSQNGIGKKPLGDIEILHTETLIK 357
           PGPGRG KK + RGG V+GAGRGRGT K   KK FP SQNG+ KK    +EI +T++LIK
Sbjct: 299 PGPGRGMKKSMARGGAVTGAGRGRGTPKGQSKKVFPPSQNGLEKKDDSSLEIYNTDSLIK 358

Query: 358 EVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASDGES 402
           EVE+V    +PD   + + K++LKEQE ALV+ IAKL++ASDGES
Sbjct: 359 EVERVVTTANPDSVQILEVKKMLKEQEQALVDIIAKLDEASDGES 403

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435596|ref|XP_002285615.1| PREDICTED: uncharacterized protein LOC100257061 [Vitis vinifera]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 294/408 (72%), Positives = 330/408 (80%), Gaps = 8/408 (1%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQD 60
           MDY LSDSSGTDDDLPPSH NRF RG R +GNGRS V+GSA  PRM  DM  QIH +EQ+
Sbjct: 1   MDYGLSDSSGTDDDLPPSHQNRFSRGGRASGNGRSGVLGSAPFPRMHGDMEAQIHHIEQE 60

Query: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120
           AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLS+VNADDII  IREWRK 
Sbjct: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSRVNADDIIRSIREWRKG 120

Query: 121 SGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALR 180
            GLQ GM +  QPVH+  PSPTVSASRKK KTSQS+ASLS GAPSP +HP++QPSSSAL+
Sbjct: 121 GGLQHGMAA--QPVHESIPSPTVSASRKKQKTSQSIASLSLGAPSPALHPTMQPSSSALK 178

Query: 181 PGPPPGSKGKKPKSF----STGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTR 236
             P P SK KK K      S GL GR Q+ANRGSSGAF  N  +E  TY+PLIG+KVWTR
Sbjct: 179 HAPTPRSKSKKTKPSMQYPSAGLTGRPQLANRGSSGAFVGNEAAEGTTYDPLIGKKVWTR 238

Query: 237 WPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRK 296
           WPEDNHFYEAVITDYNP EGRHALVYDINT +ETWEWVNLKEISPEDI+WEGDE G+SR+
Sbjct: 239 WPEDNHFYEAVITDYNPVEGRHALVYDINTTNETWEWVNLKEISPEDIRWEGDESGMSRR 298

Query: 297 GGRPGPGRGTKKPLTRGGGVSGAGRGRGTMK--PKKGFPFSQNGIGKKPLGDIEILHTET 354
           G RPGPGRG KK + RGG V+GAGRGRGT K   KK FP SQNG+ KK    +EI +T++
Sbjct: 299 GSRPGPGRGMKKSMARGGAVTGAGRGRGTPKGQSKKVFPPSQNGLEKKDDSSLEIYNTDS 358

Query: 355 LIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASDGES 402
           LIKEVE+V    +PD   + + K++LKEQE ALV+ IAKL++ASDGES
Sbjct: 359 LIKEVERVVTTANPDSVQILEVKKMLKEQEQALVDIIAKLDEASDGES 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544742|ref|XP_002513432.1| conserved hypothetical protein [Ricinus communis] gi|223547340|gb|EEF48835.1| conserved hypothetical protein [Ricinus communis]

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 308/403 (76%), Positives = 346/403 (85%), Gaps = 8/403 (1%)

Query: 9   SGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQDAYSSVLRA 68
           +GTDDDLPPSH NRFQ GVRP GNGRS  +GS S+PR+ +DM TQIH++EQ+AY+SVLRA
Sbjct: 2   AGTDDDLPPSHRNRFQSGVRPAGNGRSTAVGSTSIPRLHSDMETQIHNIEQEAYTSVLRA 61

Query: 69  FKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASGLQPGMP 128
           FKAQSDAITWEKESLITELRKELRVSDEEHRELLS+VN+DDII RIREWRK +GLQPGMP
Sbjct: 62  FKAQSDAITWEKESLITELRKELRVSDEEHRELLSRVNSDDIIRRIREWRKTNGLQPGMP 121

Query: 129 SIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALRPGPPPGSK 188
           S  QP HDP+PSPTVSAS KK KTSQSVASLS GAPSP + PS+QPSSSA R GPPPG +
Sbjct: 122 STAQPAHDPSPSPTVSASHKKQKTSQSVASLSMGAPSPAL-PSMQPSSSAFRRGPPPGPR 180

Query: 189 GKKPKSF----STGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFY 244
            KKPKS     S GL GR Q ANR SSGAF AN P+EA +Y+ LIGRKVWTRWPEDNHFY
Sbjct: 181 SKKPKSSMQYPSAGLTGRAQAANRSSSGAFAANEPAEATSYD-LIGRKVWTRWPEDNHFY 239

Query: 245 EAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGRPGPGR 304
           EAVITDY P EGRHALVYDINTADETWEWVNLKEISPEDI+W+ ++ G+ R+GGRPGPGR
Sbjct: 240 EAVITDYKPAEGRHALVYDINTADETWEWVNLKEISPEDIRWKDEDQGVFRRGGRPGPGR 299

Query: 305 GTKKPLTRGGGVSGAGRGRGTMK--PKKGFPFSQNGIGKKPLGDIEILHTETLIKEVEKV 362
           G KK +  GGG+ GAGRGRGTMK   +K FP +QNGIG+K L DIEILHT+TLIKEVEKV
Sbjct: 300 GNKKSMAHGGGLGGAGRGRGTMKGQSRKEFPLAQNGIGRKALDDIEILHTDTLIKEVEKV 359

Query: 363 FAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASDGESGNN 405
           F+ANH DP ++EKAK+VL+E E ALV+AIA+LEDASDGESGNN
Sbjct: 360 FSANHADPMEIEKAKKVLQEHEQALVDAIARLEDASDGESGNN 402

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30684221|ref|NP_196806.2| Emsy N Terminus and plant Tudor-like domain-containing protein [Arabidopsis thaliana] gi|332004459|gb|AED91842.1| Emsy N Terminus and plant Tudor-like domain-containing protein [Arabidopsis thaliana]

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 284/410 (69%), Positives = 333/410 (81%), Gaps = 20/410 (4%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQD 60
           MDY+ SDSSGTDDDLPPSH  R+QR  RPTGNGR +V+ SA L R+ N+M TQIH +EQ+
Sbjct: 1   MDYRPSDSSGTDDDLPPSHQGRYQRNARPTGNGRPSVLNSAPLSRVHNEMETQIHLIEQE 60

Query: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120
           AYSS+LRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLS+VNAD++I RIREWRKA
Sbjct: 61  AYSSILRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSRVNADEMIRRIREWRKA 120

Query: 121 SGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALR 180
           + LQ    S+PQ VHD APSP VS SRKK KTSQS+ASL+ G PSP +HPS+QPSSSALR
Sbjct: 121 NSLQ---SSVPQLVHD-APSPAVSGSRKKQKTSQSIASLAMGPPSPSLHPSMQPSSSALR 176

Query: 181 PGPPPGSKGKKPKSF-----STGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWT 235
            G PP     K         STG+AGR Q      +GA   N P E+ +Y+PL+GRKVWT
Sbjct: 177 RGGPPPGPKTKKPKTSMQYPSTGIAGRPQ------AGAL-TNEPGESGSYDPLVGRKVWT 229

Query: 236 RWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISR 295
           +WP+DN +YEAVITDYNP EGRHALVYDIN+A+ETWEWVNLKEISP DI+WEG++PGISR
Sbjct: 230 KWPDDNQYYEAVITDYNPVEGRHALVYDINSANETWEWVNLKEISPGDIRWEGEDPGISR 289

Query: 296 KGGRPGPGRGTKKPLTRGGGVSGA-GRGRGTMKPKKGFPFSQNGIGKKPLGDIEILHTET 354
           KGG PG GRGTK  + RGG  S A GRGRG+M+ ++  P +QNGIGKK LG+IEILHTET
Sbjct: 290 KGGHPGQGRGTKT-MARGGPASNAGGRGRGSMRMQQ--PKTQNGIGKKALGEIEILHTET 346

Query: 355 LIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASDGESGN 404
           L+KEVEKVF + +P+P +VEKAKRVL++ ELAL++AIAKLE+ SDGESGN
Sbjct: 347 LLKEVEKVFGSVNPNPAEVEKAKRVLRDHELALMDAIAKLEEISDGESGN 396

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7630058|emb|CAB88266.1| putative protein [Arabidopsis thaliana]

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 282/408 (69%), Positives = 331/408 (81%), Gaps = 20/408 (4%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQD 60
           MDY+ SDSSGTDDDLPPSH  R+QR  RPTGNGR +V+ SA L R+ N+M TQIH +EQ+
Sbjct: 1   MDYRPSDSSGTDDDLPPSHQGRYQRNARPTGNGRPSVLNSAPLSRVHNEMETQIHLIEQE 60

Query: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120
           AYSS+LRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLS+VNAD++I RIREWRKA
Sbjct: 61  AYSSILRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSRVNADEMIRRIREWRKA 120

Query: 121 SGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALR 180
           + LQ    S+PQ VHD APSP VS SRKK KTSQS+ASL+ G PSP +HPS+QPSSSALR
Sbjct: 121 NSLQ---SSVPQLVHD-APSPAVSGSRKKQKTSQSIASLAMGPPSPSLHPSMQPSSSALR 176

Query: 181 PGPPPGSKGKKPKSF-----STGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWT 235
            G PP     K         STG+AGR Q      +GA   N P E+ +Y+PL+GRKVWT
Sbjct: 177 RGGPPPGPKTKKPKTSMQYPSTGIAGRPQ------AGAL-TNEPGESGSYDPLVGRKVWT 229

Query: 236 RWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISR 295
           +WP+DN +YEAVITDYNP EGRHALVYDIN+A+ETWEWVNLKEISP DI+WEG++PGISR
Sbjct: 230 KWPDDNQYYEAVITDYNPVEGRHALVYDINSANETWEWVNLKEISPGDIRWEGEDPGISR 289

Query: 296 KGGRPGPGRGTKKPLTRGGGVSGA-GRGRGTMKPKKGFPFSQNGIGKKPLGDIEILHTET 354
           KGG PG GRGTK  + RGG  S A GRGRG+M+ ++  P +QNGIGKK LG+IEILHTET
Sbjct: 290 KGGHPGQGRGTKT-MARGGPASNAGGRGRGSMRMQQ--PKTQNGIGKKALGEIEILHTET 346

Query: 355 LIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASDGES 402
           L+KEVEKVF + +P+P +VEKAKRVL++ ELAL++AIAKLE+ SDGES
Sbjct: 347 LLKEVEKVFGSVNPNPAEVEKAKRVLRDHELALMDAIAKLEEISDGES 394

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502209|ref|XP_004161575.1| PREDICTED: uncharacterized protein LOC101228708 [Cucumis sativus]

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 277/405 (68%), Positives = 314/405 (77%), Gaps = 5/405 (1%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQD 60
           M+Y+ SDSSGTDDDLPP H +RFQRG  P GNGRSA + S++LPRM  DM  QIH +EQ+
Sbjct: 1   MEYEPSDSSGTDDDLPPPHQSRFQRGGLPAGNGRSAPVNSSALPRMLGDMEMQIHHIEQE 60

Query: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120
           AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHR+LLS+VNADD+I RIREWR A
Sbjct: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRKLLSRVNADDVIKRIREWRTA 120

Query: 121 SGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALR 180
           +GLQPG  +  QP+ DP PSPT SASRKK KTSQ  ASLS GAP+P M  ++ PSSS LR
Sbjct: 121 NGLQPGKLNSDQPMADPVPSPTASASRKKQKTSQ--ASLSQGAPTPAMPTTIPPSSSTLR 178

Query: 181 PGPPPGSKGKKPKS-FSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPE 239
            GPPPG++  K KS   TG  G  QV NRGS GAF +N  +E   + PLIGRKVWTRWPE
Sbjct: 179 RGPPPGARTTKTKSAMHTGPTGSAQVNNRGSLGAFASNENAEGVNHEPLIGRKVWTRWPE 238

Query: 240 DNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGR 299
           DN FYEAVITDYN  EGRHALVYDINTA ETWEWVNLKEISPEDI+WE +     R G R
Sbjct: 239 DNSFYEAVITDYNHAEGRHALVYDINTAHETWEWVNLKEISPEDIRWEREVSAALRGGAR 298

Query: 300 PGPGRGTKKPLT--RGGGVSGAGRGRGTMKPKKGFPFSQNGIGKKPLGDIEILHTETLIK 357
           PG GRG KK +T        G GRG    + ++  P SQNG  K+P GDIEILHT+TLIK
Sbjct: 299 PGHGRGNKKSMTRGGAVAAGGRGRGTTKGQSRRDLPVSQNGSRKQPTGDIEILHTDTLIK 358

Query: 358 EVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASDGES 402
           EVEKVF AN PDP ++EKAK+VLK+ E +LV+AIA+LEDASDGES
Sbjct: 359 EVEKVFGANQPDPMEIEKAKKVLKDHEQSLVDAIARLEDASDGES 403

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462597|ref|XP_004149027.1| PREDICTED: uncharacterized protein LOC101218087 [Cucumis sativus]

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 276/405 (68%), Positives = 314/405 (77%), Gaps = 5/405 (1%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQD 60
           M+Y+ SDSSGTDDDLPP H +RFQRG  P GNGRSA + S++LPRM  DM  QIH +EQ+
Sbjct: 1   MEYEPSDSSGTDDDLPPPHQSRFQRGGLPAGNGRSAPVNSSALPRMLGDMEMQIHHIEQE 60

Query: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120
           AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHR+LLS+VNADD+I RIREWR A
Sbjct: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRKLLSRVNADDVIKRIREWRTA 120

Query: 121 SGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALR 180
           +GLQPG  +  QP+ DP PSPT SASRKK KTSQ  ASLS GAP+P M  ++ PSSS LR
Sbjct: 121 NGLQPGKLNSDQPMADPVPSPTASASRKKQKTSQ--ASLSQGAPTPAMPTTIPPSSSTLR 178

Query: 181 PGPPPGSKGKKPKS-FSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPE 239
            GPPPG++  K KS   TG  G  QV NRGS GAF +N  +E   + PLIGRKVWTRWPE
Sbjct: 179 RGPPPGARTTKTKSAMHTGPTGSAQVNNRGSLGAFASNENAEGVNHEPLIGRKVWTRWPE 238

Query: 240 DNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGR 299
           DN FYEAVITDYN  EGRHALVYDINTA ETWEWVNLKEISPEDI+WE +     R G R
Sbjct: 239 DNSFYEAVITDYNHAEGRHALVYDINTAHETWEWVNLKEISPEDIRWEREVSAALRGGAR 298

Query: 300 PGPGRGTKKPLT--RGGGVSGAGRGRGTMKPKKGFPFSQNGIGKKPLGDIEILHTETLIK 357
           PG GRG +K +T        G GRG    + ++  P SQNG  K+P GDIEILHT+TLIK
Sbjct: 299 PGHGRGNRKSMTRGGAVAAGGRGRGTTKGQSRRDLPVSQNGSRKQPTGDIEILHTDTLIK 358

Query: 358 EVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASDGES 402
           EVEKVF AN PDP ++EKAK+VLK+ E +LV+AIA+LEDASDGES
Sbjct: 359 EVEKVFGANQPDPMEIEKAKKVLKDHEQSLVDAIARLEDASDGES 403

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811421|ref|XP_002873594.1| emsy N terminus domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297319431|gb|EFH49853.1| emsy N terminus domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 283/410 (69%), Positives = 328/410 (80%), Gaps = 19/410 (4%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQD 60
           MDY+ SDSSGTDDDLPPSH  R+QR  RP GNGR +V+ SA L R+ NDM TQIH +EQ+
Sbjct: 1   MDYRPSDSSGTDDDLPPSHQGRYQRSARPAGNGRPSVLNSAPLSRVHNDMETQIHLIEQE 60

Query: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120
           AYSS+LRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLS+VNAD++I RIREWRK 
Sbjct: 61  AYSSILRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSRVNADEMIRRIREWRKT 120

Query: 121 SGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALR 180
           + LQ    S+PQ VHD APSP VS SRKK KTSQS+ASL+ G PSP +HPS+QPSSSALR
Sbjct: 121 NSLQ---SSVPQLVHD-APSPAVSGSRKKQKTSQSIASLAMGPPSPSLHPSMQPSSSALR 176

Query: 181 PGPPPGSKGKKPKSFS-----TGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWT 235
            G PP     K    S     TG+ GR Q      +GA   N P E+ +Y+PL+GRKVWT
Sbjct: 177 RGGPPPGPKTKKPKTSMQYPPTGMPGRPQ------AGAL-TNEPGESGSYDPLVGRKVWT 229

Query: 236 RWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISR 295
           +WP+DNHFYEAVITDYNP E RHALVYDIN+A+ETWEWVNLKEISP DI+WEG++PG+SR
Sbjct: 230 KWPDDNHFYEAVITDYNPVEVRHALVYDINSANETWEWVNLKEISPGDIRWEGEDPGVSR 289

Query: 296 KGGRPGPGRGTKKPLTRGGGVSGA-GRGRGTMKPKKGFPFSQNGIGKKPLGDIEILHTET 354
           KGG PG GRGT K + RGG  S A GRGRG MK ++  P +QNGIGKK LG+IEILHT+T
Sbjct: 290 KGGHPGQGRGTSKSMARGGPTSNAGGRGRGGMKMQQ--PKTQNGIGKKALGEIEILHTDT 347

Query: 355 LIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASDGESGN 404
           LIKEVEKVF + +P+P +VEKAKRVL++ ELAL+ AIAKLE+ SDGESGN
Sbjct: 348 LIKEVEKVFGSVNPNPAEVEKAKRVLRDHELALMEAIAKLEEISDGESGN 397

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487460|ref|XP_002273408.2| PREDICTED: uncharacterized protein LOC100263217 [Vitis vinifera]

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 278/415 (66%), Positives = 319/415 (76%), Gaps = 20/415 (4%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRM--QNDMATQIHSVE 58
           MDY+  DSSGTDDDLPP H NR  RG R  GNGRSAV+GS    RM  + DM TQIH +E
Sbjct: 1   MDYEPFDSSGTDDDLPPPHQNRIPRGGRVAGNGRSAVVGSIPYSRMYGETDMETQIHQLE 60

Query: 59  QDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWR 118
           Q+AYSSVLRAFKAQ+DAITWEKESLITELRKELR+S+EEHRELL +VNADD+I RIREWR
Sbjct: 61  QEAYSSVLRAFKAQADAITWEKESLITELRKELRLSNEEHRELLGRVNADDVIRRIREWR 120

Query: 119 KASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHP-----SVQ 173
           +A GLQPGM +  Q VHDP PSPTVSASRKK K +QS+ S S G PS   HP     S Q
Sbjct: 121 QAGGLQPGMLTTGQAVHDPIPSPTVSASRKKQKITQSIPSQSFGGPSQSFHPQAIAASNQ 180

Query: 174 PSSSALRPGPPPGSKGKKPKS----FSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLI 229
           PSSSA + GP  G KGKK KS     S+G  GRGQVANRG       N P+EAAT++PLI
Sbjct: 181 PSSSAAKRGPILGPKGKKHKSSMQYASSGPTGRGQVANRG------VNEPAEAATFDPLI 234

Query: 230 GRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGD 289
           GRKV TRWP+DN+FYEAVITDYNP EGRHALVYD+ +A+ETWEWVNL EISPEDI+W+G+
Sbjct: 235 GRKVRTRWPDDNNFYEAVITDYNPVEGRHALVYDMGSANETWEWVNLSEISPEDIQWDGE 294

Query: 290 EPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMK--PKKGFPFSQNGIGKKPLGDI 347
           +PGISR+GG  G G G  + + R   V GAGRGRG  K   KK F  SQNGIGKK   DI
Sbjct: 295 DPGISRRGGYDGSGHGMNRAVGR-DSVQGAGRGRGLPKGQSKKDFLPSQNGIGKKAPDDI 353

Query: 348 EILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASDGES 402
           +ILHT+TLIKEVE+VF ANHPDP +++KAK+VLKE E AL++AI +L D SDGES
Sbjct: 354 QILHTDTLIKEVERVFTANHPDPLEIDKAKKVLKEHEQALLDAIGRLADISDGES 408

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
TAIR|locus:2182345	397	EML3 "AT5G13020" [Arabidopsis	0.977	0.997	0.633	1.7e-130
TAIR|locus:2050594	429	EML4 "AT2G44440" [Arabidopsis	0.429	0.405	0.557	7.9e-93
TAIR|locus:2099287	383	EML1 "AT3G12140" [Arabidopsis	0.276	0.292	0.657	4.1e-85
TAIR|locus:2170179	320	EML2 "AT5G06780" [Arabidopsis	0.439	0.556	0.497	2e-71
TAIR|locus:2095868	319	AT3G57970 "AT3G57970" [Arabido	0.153	0.194	0.353	2.7e-11
TAIR|locus:2095858	223	AT3G57960 "AT3G57960" [Arabido	0.212	0.385	0.287	6.6e-06
TAIR|locus:2147730	326	AT5G20030 [Arabidopsis thalian	0.162	0.202	0.388	3.8e-05

TAIR|locus:2182345 EML3 "AT5G13020" [Arabidopsis thaliana (taxid:3702)]

 Score = 1280 (455.6 bits), Expect = 1.7e-130, P = 1.7e-130
 Identities = 256/404 (63%), Positives = 304/404 (75%)

Query:     1 MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQD 60
             MDY+ SDSSGTDDDLPPSH  R+QR  RPTGNGR +V+ SA L R+ N+M TQIH +EQ+
Sbjct:     1 MDYRPSDSSGTDDDLPPSHQGRYQRNARPTGNGRPSVLNSAPLSRVHNEMETQIHLIEQE 60

Query:    61 AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120
             AYSS+LRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLS+VNAD++I RIREWRKA
Sbjct:    61 AYSSILRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSRVNADEMIRRIREWRKA 120

Query:   121 SGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALR 180
             + LQ    S+PQ VHD APSP VS SRKK KTSQS+ASL+ G PSP +HPS+QPSSSALR
Sbjct:   121 NSLQS---SVPQLVHD-APSPAVSGSRKKQKTSQSIASLAMGPPSPSLHPSMQPSSSALR 176

Query:   181 XXXXXXXXXXXXXXFSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPED 240
                            S      G +A R  +GA   N P E+ +Y+PL+GRKVWT+WP+D
Sbjct:   177 RGGPPPGPKTKKPKTSMQYPSTG-IAGRPQAGAL-TNEPGESGSYDPLVGRKVWTKWPDD 234

Query:   241 NHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISXXXXXX 300
             N +YEAVITDYNP EGRHALVYDIN+A+ETWEWVNLKEISP DI+WEG++PGIS      
Sbjct:   235 NQYYEAVITDYNPVEGRHALVYDINSANETWEWVNLKEISPGDIRWEGEDPGISRKGGHP 294

Query:   301 XXXXXXXXXLTXXXXXXXXXXXXXTMKPKKGFPFSQNGIGKKPLGDIEILHTETLIKEVE 360
                                     +M+ ++  P +QNGIGKK LG+IEILHTETL+KEVE
Sbjct:   295 GQGRGTKTMARGGPASNAGGRGRGSMRMQQ--PKTQNGIGKKALGEIEILHTETLLKEVE 352

Query:   361 KVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASDGESGN 404
             KVF + +P+P +VEKAKRVL++ ELAL++AIAKLE+ SDGESGN
Sbjct:   353 KVFGSVNPNPAEVEKAKRVLRDHELALMDAIAKLEEISDGESGN 396

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008284 "positive regulation of cell proliferation" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2050594 EML4 "AT2G44440" [Arabidopsis thaliana (taxid:3702)]

 Score = 483 (175.1 bits), Expect = 7.9e-93, Sum P(2) = 7.9e-93
 Identities = 102/183 (55%), Positives = 125/183 (68%)

Query:     1 MDYQLSDSSGTDDDLPPSHH----NRFQRGVRPTGNGRSAVIGSASLPRMQNDMAT---- 52
             MD + SDSSGTDDDLPPSH         RG R  GNGR   +   S P+M +D+A     
Sbjct:     1 MDCKSSDSSGTDDDLPPSHRVPRGGGGGRGGRVAGNGRPLNL-PPSYPKMYDDLAADMEA 59

Query:    53 QIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIIL 112
             QIH +E++AY SVLRAFKAQ DAI+WEKES+ITELRKEL +S+EEHRELL +VN+DD I 
Sbjct:    60 QIHQIEKEAYISVLRAFKAQGDAISWEKESVITELRKELSLSNEEHRELLGRVNSDDTIR 119

Query:   113 RIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSV 172
             RIREWR++ G+QP M +  Q VHD  PSP+VSAS K  K +Q + S    + SP  HP  
Sbjct:   120 RIREWRQSGGMQPSMRNAAQVVHDTLPSPSVSASMKTHKPNQPIPSQPFASSSPSFHPQA 179

Query:   173 QPS 175
              P+
Sbjct:   180 DPT 182

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099287 EML1 "AT3G12140" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 4.1e-85, Sum P(3) = 4.1e-85
 Identities = 75/114 (65%), Positives = 87/114 (76%)

Query:    50 MATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADD 109
             M TQIH +EQ+AY++VLRAFKAQSDAI+WEKESLITELRKELRVSD+EHRELLS+VN DD
Sbjct:     1 METQIHQLEQEAYTAVLRAFKAQSDAISWEKESLITELRKELRVSDDEHRELLSRVNKDD 60

Query:   110 IILRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGA 163
              I RIR+WR+    Q    +  QP  D  PSPT SA+RKK KT  S  + S GA
Sbjct:    61 TIQRIRDWRQGGASQITRHATIQPF-DVLPSPTFSAARKKQKTFPSY-NPSIGA 112

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

TAIR|locus:2170179 EML2 "AT5G06780" [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 2.0e-71, Sum P(2) = 2.0e-71
 Identities = 93/187 (49%), Positives = 125/187 (66%)

Query:   216 ANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVN 275
             AN P+EA     LIGRKVWT+WPEDN FYEAV+T YN NEGRHALVYDINT +ETWEWV+
Sbjct:   128 ANEPAEA-----LIGRKVWTKWPEDNSFYEAVVTQYNANEGRHALVYDINTVNETWEWVD 182

Query:   276 LKEISPEDIKWEGDEPGISXXXXXXXXXXXXXXXLTXXXXXXXXXXXXXTMKPKKGFPFS 335
             L EI  +DI+W+G+E G++                                +P++    +
Sbjct:   183 LNEIPTKDIRWDGEEDGVTLNVGHGGGTTRG----NRRTLSHGGRGRGPRTQPRREHLAT 238

Query:   336 QNGIGKKPLGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLE 395
             +NG G+K  G+IE+ +T++L+KEVE+VF +N PDP +++KAK++LKE E AL+ AIA+L 
Sbjct:   239 ENGGGRKFFGEIELFNTDSLVKEVERVFDSNLPDPHELDKAKKLLKEHEQALIAAIARLT 298

Query:   396 DASDGES 402
             DASD ES
Sbjct:   299 DASDYES 305

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2095868 AT3G57970 "AT3G57970" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
 Identities = 23/65 (35%), Positives = 39/65 (60%)

Query:   228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD--ETWEWVNLKEISPEDIK 285
             L+GR+V  + P+++ + E +IT Y+ N   H L+   +  D  +   WV+L+ +  ED+K
Sbjct:   201 LVGRRVHIQMPDEDEYIEFLITKYDANTETHHLLSAFSNKDYEDPCNWVDLRHVQAEDMK 260

Query:   286 W-EGD 289
             W EGD
Sbjct:   261 WPEGD 265

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2095858 AT3G57960 "AT3G57960" [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
 Identities = 27/94 (28%), Positives = 48/94 (51%)

Query:   205 VANRGSSGAFPANGPSEA-ATYNP--LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALV 261
             + N  +   F    P ++  + NP  LIG+ V  R P+   F E +I  Y+  +  H+L+
Sbjct:   114 LTNTATPSTFFVPKPVKSWGSVNPESLIGKWVSIRLPDKAKFTEYIIKAYDAEKEMHSLL 173

Query:   262 YDINTADET-----WEWVNLKEISPEDIKWEGDE 290
              + +   E      + W+++++ISP DI WEG +
Sbjct:   174 TETSNPMEVDCIDPFRWIDIRDISPNDIMWEGGQ 207

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2147730 AT5G20030 [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 3.8e-05, P = 3.8e-05
 Identities = 26/67 (38%), Positives = 40/67 (59%)

Query:    43 LPRMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELL 102
             +PR  ++ A  +H +E DAY S +    A    ITWE+E+ IT LR +L +S+EEH   +
Sbjct:   255 VPRKGSE-AADVHRLELDAYRSSIERLHASGPIITWEQETWITNLRLKLNISNEEHLMQI 313

Query:   103 SKVNADD 109
               + +DD
Sbjct:   314 RNLISDD 320


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.128   0.375    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      405       363   0.00083  117 3  11 23  0.36    35
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  247 KB (2131 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  34.96u 0.16s 35.12t   Elapsed:  00:00:01
  Total cpu time:  34.96u 0.16s 35.12t   Elapsed:  00:00:01
  Start:  Sat May 11 07:17:57 2013   End:  Sat May 11 07:17:58 2013

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	405
pfam03735	74	pfam03735, ENT, ENT domain	5e-36
smart00743	59	smart00743, Agenet, Tudor-like domain present in p	3e-05

>gnl|CDD|146396 pfam03735, ENT, ENT domain

 Score =  126 bits (318), Expect = 5e-36
 Identities = 45/73 (61%), Positives = 59/73 (80%)

Query: 50  MATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADD 109
           M  Q+H +E +AY++VLRAF+AQ DA++WEKE L+TELRKELR+SDEEHRELL +VN+D+
Sbjct: 1   MERQLHRLELEAYAAVLRAFRAQGDALSWEKEELLTELRKELRISDEEHRELLRRVNSDE 60

Query: 110 IILRIREWRKASG 122
            +L IRE R    
Sbjct: 61  RLLTIRENRSGGN 73

This presumed domain is named after Emsy N Terminus (ENT). Emsy is a protein that is amplified in breast cancer and interacts with BRCA2. The N terminus of this protein is found to be similar to other vertebrate and plant proteins of unknown function. This domain has a completely conserved histidine residue that may be functionally important. Length = 74

>gnl|CDD|214798 smart00743, Agenet, Tudor-like domain present in plant sequences

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD--ETWEWVNLKEISPEDI 284
             G +V      ++ ++EAV+T     +G++ + Y   +     T +W +L+   P   
Sbjct: 4   KEGDRVEVFS--EDSWWEAVVTKVL-GDGKYLVEYKGESEPLELTVDWSDLRPHPPWVD 59

Domain in plant sequences with possible chromatin-associated functions. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	405
KOG4675	273	consensus Uncharacterized conserved protein, conta	100.0
PF03735	73	ENT: ENT domain; InterPro: IPR005491 This entry re	99.94
PF09465	55	LBR_tudor: Lamin-B receptor of TUDOR domain; Inter	98.78
smart00743	61	Agenet Tudor-like domain present in plant sequence	98.15
smart00333	57	TUDOR Tudor domain. Domain of unknown function pre	96.61
PF09038	122	53-BP1_Tudor: Tumour suppressor p53-binding protei	95.82
cd04508	48	TUDOR Tudor domains are found in many eukaryotic o	95.63
PF06003	264	SMN: Survival motor neuron protein (SMN); InterPro	88.33
KOG3026	262	consensus Splicing factor SPF30 [RNA processing an	87.88
KOG4675	273	consensus Uncharacterized conserved protein, conta	86.87

>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only]

Probab=100.00  E-value=1.7e-54  Score=416.03  Aligned_cols=264  Identities=42%  Similarity=0.681  Sum_probs=218.8

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHH-HhhhhcCC
Q 015539           45 RMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIR-EWRKASGL  123 (405)
Q Consensus        45 r~~~~~~~~Ih~LE~~AY~sVLrAF~AQS~~lSWeKE~LLTeLR~eL~ISdeEH~~~l~~i~~De~I~~iR-e~rq~gg~  123 (405)
                      ..+++|+.+||+||++||++||+||+||+++||||||++||+||++|+||+|||+++++++.+|+.|.+|| +|+..+..
T Consensus         3 ~s~~~~~~~~~~le~eaY~~vl~af~aq~d~iS~ek~~~~teLrk~l~Is~eeh~~~~r~~~~d~~~~~i~~n~~~~n~~   82 (273)
T KOG4675|consen    3 FSRDEMEAQLHRLELEAYASVLRAFKAQGDAISWEKEELLTELRKELNISDEEHRMLVRRAINDDLITRIRENSRGSNKS   82 (273)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHhhhhccCHHHHHHHHHHHhccHHHHHHHHhhcCCCch
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999 57655544


Q ss_pred             CCCCCCCCCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc----CCC
Q 015539          124 QPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALRPGPPPGSKGKKPKSFS----TGL  199 (405)
Q Consensus       124 q~g~~~~~q~~hd~~psPt~sasrKkqKts~s~ps~s~g~psp~~~p~~qpsssa~k~g~~~~~k~kk~k~~s----~~~  199 (405)
                      |--.+ ......+..|+|+.+.++|+||+.++++++.+.+.+|++++.+++.            +.+.+++++    ..+
T Consensus        83 qe~~~-e~~~~~~i~p~~~~sta~kiqkn~~~~~a~~~~~~~ps~~~t~~~~------------~~~~a~pss~s~~~p~  149 (273)
T KOG4675|consen   83 QEWSG-EGRREWPIAPRPHPSTARKIQKNLLANKAIQHNAVLPSPIPTGPLT------------FNNTATPSSFSVPSPV  149 (273)
T ss_pred             hhhhh-hhhhccccCCCcCchhHHHhhccccchhhhhcccCCCCccccCCcc------------cCcccccccccCCCCC
Confidence            32111 1123466779999999999999999999999999999999877774            222222321    112


Q ss_pred             CCCcccccCCCCCCCCCCCCCCcccCCccccceeecccCCCCCceeEEEee-cCCCCCceeeeecCCCcccchhhhcccc
Q 015539          200 AGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITD-YNPNEGRHALVYDINTADETWEWVNLKE  278 (405)
Q Consensus       200 ~g~~q~~~r~~~~~~~~~~~~~~~~~~~LIGrkV~~~WPdDn~wyEavItd-Yn~~tg~H~LvYD~~t~~EtwEWvdL~e  278 (405)
                      +.|+.                  ....+||||||+++||+++.|||++||+ |+..++.|+|+||+++.+++|+||||++
T Consensus       150 ~~~~n------------------~pp~slvgr~v~~k~pdk~~~te~iit~~~~~~E~~~~l~~~~~~~~~p~~wvdl~~  211 (273)
T KOG4675|consen  150 SSWGN------------------VPPESLVGRKVWIKWPDKRKFTEAIITQYDAEKEGHHLLVPDINDCNDPWEWVDLRE  211 (273)
T ss_pred             Ccccc------------------CCchhhccccccccCcccccccccccccchhhhhhhhhcccccccccCCcccccccc
Confidence            22222                  2335599999999999999999999999 7788899999999999999999999999


Q ss_pred             CCccCccccCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 015539          279 ISPEDIKWEGDEPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMKPKKGFPFSQNGIGKK  342 (405)
Q Consensus       279 ispedI~W~~e~pgi~~~~~~~g~g~g~~~~~~~~g~~~~~grgrg~~k~~k~~~~~qng~~~~  342 (405)
                      |+||||+|+++++++..+.++.++|.|..+.+.+++.  ..+||+|..+ |+.+++.|||.+++
T Consensus       212 I~p~DIrw~g~~~~~~~~~~~~~~g~g~~~~t~~~~~--~~~~~~~~~~-~~~~~~~~ngg~~~  272 (273)
T KOG4675|consen  212 ISPEDIRWEGGDPGNPVAPNHSKPGTGTFNTTRRTQS--PGARGRGPRT-RTGIPKTQNGGGRK  272 (273)
T ss_pred             CCHHhccccCCCCCcccccCCCCCCcccccccCCccC--ccccCCCCcc-ccccccccCccccC
Confidence            9999999999999999999999999999988877663  2335555544 78899999994443

>PF03735 ENT: ENT domain; InterPro: IPR005491 This entry represents a protein regulator which is able to repress transcription, possibly via its interaction with a multi protein chromatin re-modeling complex that modifies the chromatin

Probab=99.94  E-value=9.4e-27  Score=187.15  Aligned_cols=72  Identities=57%  Similarity=0.932  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHhhhhcC
Q 015539           50 MATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASG  122 (405)
Q Consensus        50 ~~~~Ih~LE~~AY~sVLrAF~AQS~~lSWeKE~LLTeLR~eL~ISdeEH~~~l~~i~~De~I~~iRe~rq~gg  122 (405)
                      |+++||+||++||++||+||+||++ |||+||.|||+||++|+||||||++++++|.+|+.|++||+|+++++
T Consensus         1 ~~~~l~~LE~eAY~svl~Af~Aqg~-lsweke~lLt~Lr~~L~IS~e~H~~~l~~~~~De~l~~ir~~~~~~~   72 (73)
T PF03735_consen    1 MERQLHRLELEAYSSVLRAFRAQGP-LSWEKEKLLTELRKELNISDEEHREELRRAVSDEQLKTIREWRQGGN   72 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHTT--HHHHHHHHHHHHH-HHHHHHHHHHH-SS
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHhccHHHHHHHHHhhcCC
Confidence            6799999999999999999999965 99999999999999999999999999999999999999999998875

Its interaction with BRCA2 suggests that it may play a central role in the DNA repair function of BRCA2 []. ; PDB: 1UZ3_B 1UTU_B 2FMM_E.

>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane

Probab=98.78  E-value=4.4e-09  Score=81.35  Aligned_cols=41  Identities=29%  Similarity=0.627  Sum_probs=34.7

Q ss_pred             cccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcc
Q 015539          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  268 (405)
Q Consensus       228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~  268 (405)
                      -+|++|+.+||+++-||||.|++||..+.+|.|.|++||..
T Consensus         7 ~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~DGtel   47 (55)
T PF09465_consen    7 AIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYEDGTEL   47 (55)
T ss_dssp             -SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETTS-EE
T ss_pred             cCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcCCCEE
Confidence            37899999999999999999999999999999999999984

It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.

>smart00743 Agenet Tudor-like domain present in plant sequences

Probab=98.15  E-value=2.5e-06  Score=64.63  Aligned_cols=54  Identities=26%  Similarity=0.395  Sum_probs=49.1

Q ss_pred             cccceeecccCCCCCceeEEEeecCCCCCceeeeecC--CCcccchhhhccccCCcc
Q 015539          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDI--NTADETWEWVNLKEISPE  282 (405)
Q Consensus       228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~--~t~~EtwEWvdL~eispe  282 (405)
                      .+|.+|..+|++++.||+|+|+.++. +++|.|.|+.  ...+|++++.+|+-+.|.
T Consensus         4 ~~G~~Ve~~~~~~~~W~~a~V~~~~~-~~~~~V~~~~~~~~~~e~v~~~~LRp~~~w   59 (61)
T smart00743        4 KKGDRVEVFSKEEDSWWEAVVTKVLG-DGKYLVRYLTESEPLKETVDWSDLRPHPPW   59 (61)
T ss_pred             CCCCEEEEEECCCCEEEEEEEEEECC-CCEEEEEECCCCcccEEEEeHHHcccCCCC
Confidence            47899999999999999999999999 7789999999  778899999999988764

Domain in plant sequences with possible chromatin-associated functions.

>smart00333 TUDOR Tudor domain

Probab=96.61  E-value=0.0032  Score=46.50  Aligned_cols=39  Identities=26%  Similarity=0.399  Sum_probs=34.4

Q ss_pred             ccccceeecccCCCCCceeEEEeecCCCCCceeeeecC-CCc
Q 015539          227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDI-NTA  267 (405)
Q Consensus       227 ~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~-~t~  267 (405)
                      .-+|..|..+| +|+.||.|+|+++++. +...|.|.+ ++.
T Consensus         3 ~~~G~~~~a~~-~d~~wyra~I~~~~~~-~~~~V~f~D~G~~   42 (57)
T smart00333        3 FKVGDKVAARW-EDGEWYRARIIKVDGE-QLYEVFFIDYGNE   42 (57)
T ss_pred             CCCCCEEEEEe-CCCCEEEEEEEEECCC-CEEEEEEECCCcc
Confidence            45788999999 9999999999999998 888888888 665

Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).

>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix

Probab=95.82  E-value=0.0061  Score=54.27  Aligned_cols=41  Identities=20%  Similarity=0.549  Sum_probs=34.0

Q ss_pred             CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCc
Q 015539          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTA  267 (405)
Q Consensus       226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~  267 (405)
                      .+|||.+|-.+|-+++-||-|+|+.. ...++..|.+|++..
T Consensus         2 ~~~iG~rV~AkWS~n~yyY~G~I~~~-~~~~kykv~FdDG~~   42 (122)
T PF09038_consen    2 SSFIGLRVFAKWSDNGYYYPGKITSD-KGKNKYKVLFDDGYE   42 (122)
T ss_dssp             --STT-EEEEESSTTSEEEEEEEEEE-ETTTEEEEEETTS-E
T ss_pred             CcccccEEEEEEccCCcccCceEeec-CCCCeEEEEecCCcc
Confidence            57999999999998888899999994 778999999999986

The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.

>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains

Probab=95.63  E-value=0.016  Score=41.40  Aligned_cols=38  Identities=18%  Similarity=0.443  Sum_probs=30.6

Q ss_pred             cceeecccCCCCCceeEEEeecCCCCCceeeeecC-CCcc
Q 015539          230 GRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDI-NTAD  268 (405)
Q Consensus       230 GrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~-~t~~  268 (405)
                      |..+..+|++|+.||.|+|+..++ ++.-.+.|.+ |+.+
T Consensus         1 G~~c~a~~~~d~~wyra~V~~~~~-~~~~~V~f~DyG~~~   39 (48)
T cd04508           1 GDLCLAKYSDDGKWYRAKITSILS-DGKVEVFFVDYGNTE   39 (48)
T ss_pred             CCEEEEEECCCCeEEEEEEEEECC-CCcEEEEEEcCCCcE
Confidence            456788999999999999999998 5666666666 6654

For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.

>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins

Probab=88.33  E-value=0.52  Score=46.40  Aligned_cols=49  Identities=27%  Similarity=0.500  Sum_probs=37.1

Q ss_pred             cccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccccC
Q 015539          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI  279 (405)
Q Consensus       228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~ei  279 (405)
                      -||-+++..|-+|+.||+|+|+.-+...+.-.|+|+--.-.   |.|.|.++
T Consensus        70 kvGd~C~A~~s~Dg~~Y~A~I~~i~~~~~~~~V~f~gYgn~---e~v~l~dL  118 (264)
T PF06003_consen   70 KVGDKCMAVYSEDGQYYPATIESIDEEDGTCVVVFTGYGNE---EEVNLSDL  118 (264)
T ss_dssp             -TT-EEEEE-TTTSSEEEEEEEEEETTTTEEEEEETTTTEE---EEEEGGGE
T ss_pred             CCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEcccCCe---Eeeehhhh
Confidence            38899999999999999999999999999888888764322   34555555

The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.

>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]

Probab=87.88  E-value=0.43  Score=47.24  Aligned_cols=36  Identities=28%  Similarity=0.556  Sum_probs=32.5

Q ss_pred             cccceeecccCCCCCceeEEEeecCCCCCceeeeec
Q 015539          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYD  263 (405)
Q Consensus       228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD  263 (405)
                      -||.||...|+||..||+|+|.+-.+.++.-+|.++
T Consensus        92 ~vg~K~~A~~~ddg~~y~AtIe~ita~~~~~ai~f~  127 (262)
T KOG3026|consen   92 KVGDKVQAVFSDDGQIYDATIEHITAMEGTVAIIFA  127 (262)
T ss_pred             ccCCEEEEeecCCCceEEeehhhccCCCCceeEEEe
Confidence            478999999999999999999999998888877765

>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only]

Probab=86.87  E-value=7.9  Score=39.02  Aligned_cols=37  Identities=8%  Similarity=-0.226  Sum_probs=32.0

Q ss_pred             CCCCcccCCccccceeecccCCCCCceeEEEeecCCC
Q 015539          218 GPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPN  254 (405)
Q Consensus       218 ~~~~~~~~~~LIGrkV~~~WPdDn~wyEavItdYn~~  254 (405)
                      ...+++...+.+++.++..|+-|+++|+..+.-||..
T Consensus       174 ~~te~iit~~~~~~E~~~~l~~~~~~~~~p~~wvdl~  210 (273)
T KOG4675|consen  174 KFTEAIITQYDAEKEGHHLLVPDINDCNDPWEWVDLR  210 (273)
T ss_pred             cccccccccchhhhhhhhhcccccccccCCccccccc
Confidence            4556677778999999999999999999999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	405
2fmm_E	133	Protein EMSY; ENT domain, chromo shadow domain, EM	3e-36
1uz3_A	102	EMSY protein; chromatin regulator, chromatin regul	3e-27
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08

>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1 Length = 133

 Score =  128 bits (322), Expect = 3e-36
 Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 11/133 (8%)

Query: 41  ASLPRMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRE 100
             L   +++    +  +E +AY+ V+ A +AQ D +T EK+ L+ EL K L +S E HR 
Sbjct: 1   GPLDLSRDECKRILRKLELEAYAGVISALRAQGD-LTKEKKDLLGELSKVLSISTERHRA 59

Query: 101 LLSKVNADDIILRIR----------EWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKT 150
            + +   D+ +  I           EW         +     P      +    A+    
Sbjct: 60  EVRRAVNDERLTTIAHNMSGPNSSSEWSIEGRRLVPLMPRLVPQTAFTVTANAVANAAIQ 119

Query: 151 KTSQSVASLSTGA 163
             +       TG+
Sbjct: 120 HNASLPVPAETGS 132

>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A Length = 102

 Score =  103 bits (258), Expect = 3e-27
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 47  QNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVN 106
           +++    +  +E +AY+ V+ A +AQ D +T EK+ L+ EL K L +S E HR  + +  
Sbjct: 15  RDECKRILRKLELEAYAGVISALRAQGD-LTKEKKDLLGELSKVLSISTERHRAEVRRAV 73

Query: 107 ADDIILRIREWRKAS 121
            D+ +  I       
Sbjct: 74  NDERLTTIAHNMSGP 88

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 2e-08
 Identities = 54/345 (15%), Positives = 93/345 (26%), Gaps = 114/345 (33%)

Query: 3   YQLSDSSGTDDDLPPSHHNRFQ---------RGVRPT---------GNGRSAVIGSASL- 43
            Q       +      + +R Q           +RP          G+G++ V     L 
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173

Query: 44  PRMQNDMATQIH--------SVE------QDAYSSVLRAFKAQSD---AITWEKESLITE 86
            ++Q  M  +I         S E      Q     +   + ++SD    I     S+  E
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 87  LRKELRVSDEEHRELLSKVNADDIILR-IREWR--KASGLQPGMPSIPQPVHDPAPSPTV 143
           LR+ L+   + +   L       ++L  ++  +   A  L                   +
Sbjct: 234 LRRLLK--SKPYENCL-------LVLLNVQNAKAWNAFNLS---------------CKIL 269

Query: 144 SASRKKTKTSQSVA-SLSTGAPSPGMHPSVQPSSSALRPGPPPGSKGKKPKSFSTGLAGR 202
             +R K      V   LS    +   H S+   S  L       +  +        L  R
Sbjct: 270 LTTRFK-----QVTDFLSAATTT---HISLDHHSMTL-------TPDEVKSLLLKYLDCR 314

Query: 203 GQVANRGSSGAFPANGPSEAATYNPL----IGRKV------WTRWPEDN-----HFYEAV 247
                       P + P E  T NP     I   +      W  W   N        E+ 
Sbjct: 315 ------------PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 248 ITDYNPNEGRH---ALV---YDINTADETWE--WVNLKEISPEDI 284
           +    P E R     L       +         W ++ +     +
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	405
1uz3_A	102	EMSY protein; chromatin regulator, chromatin regul	99.92
2fmm_E	133	Protein EMSY; ENT domain, chromo shadow domain, EM	99.9
2equ_A	74	PHD finger protein 20-like 1; tudor domain, struct	97.29
2l8d_A	66	Lamin-B receptor; DNA binding protein; NMR {Gallus	97.11
2dig_A	68	Lamin-B receptor; tudor domain, integral nuclear e	97.08
1mhn_A	59	SurviVal motor neuron protein; SMN, SMA, spinal mu	96.84
4a4f_A	64	SurviVal of motor neuron-related-splicing factor;	96.52
3p8d_A	67	Medulloblastoma antigen MU-MB-50.72; tudor domain,	96.36
1g5v_A	88	SurviVal motor neuron protein 1; mRNA processing,	96.32
2ldm_A	81	Uncharacterized protein; PHF20, tudor domain, epig	95.18
3qii_A	85	PHD finger protein 20; tudor domain, structural ge	96.13
2g3r_A	123	Tumor suppressor P53-binding protein 1; tandem tud	96.07
2d9t_A	78	Tudor domain-containing protein 3; structural geno	96.05
3pnw_C	77	Tudor domain-containing protein 3; FAB, structural	95.96
3s6w_A	54	Tudor domain-containing protein 3; methylated argi	95.56
1ssf_A	156	Transformation related protein 53 binding protein	95.25
2eqj_A	66	Metal-response element-binding transcription facto	95.11
2eqk_A	85	Tudor domain-containing protein 4; structural geno	92.86
2diq_A	110	Tudor and KH domain-containing protein; tudor doma	92.12
3fdr_A	94	Tudor and KH domain-containing protein; TDRD2, str	91.83
2m0o_A	79	PHD finger protein 1; tudor domain, H3K36ME3 bindi	91.22
2xk0_A	69	Polycomb protein PCL; transcription, aromatic CAGE	90.03
4hcz_A	58	PHD finger protein 1; protein-peptide complex, tud	89.25
3ntk_A	169	Maternal protein tudor; tudor domain, OB-fold, GER	86.51
2wac_A	218	CG7008-PA; unknown function, tudor, beta-barrel, n	86.01
2rnz_A	94	Histone acetyltransferase ESA1; HAT, chromodomain,	85.14
2eko_A	87	Histone acetyltransferase htatip; chromo domain, h	83.93
2e5q_A	63	PHD finger protein 19; tudor domain, isoform B, st	83.64

>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A

Probab=99.92  E-value=2.6e-25  Score=187.46  Aligned_cols=75  Identities=28%  Similarity=0.431  Sum_probs=70.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHhhhhcC
Q 015539           47 QNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASG  122 (405)
Q Consensus        47 ~~~~~~~Ih~LE~~AY~sVLrAF~AQS~~lSWeKE~LLTeLR~eL~ISdeEH~~~l~~i~~De~I~~iRe~rq~gg  122 (405)
                      .++++.+||+||++||++||+||+||+ +||||||+|||+||++||||||||+++|+++.+|+.|++||++..+..
T Consensus        15 ~~e~~~~l~~LEleAY~svlrAf~AqG-~Lsweke~LLt~LR~~L~IS~eeH~~elrr~~sDe~l~~Ire~~~g~~   89 (102)
T 1uz3_A           15 RDECKRILRKLELEAYAGVISALRAQG-DLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGPN   89 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCHHHHHHHHHHHCSC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhcchHHHHHHHHHhcCCC
Confidence            358999999999999999999999995 599999999999999999999999999999999999999999987663

>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1

Probab=99.90  E-value=5.5e-24  Score=186.42  Aligned_cols=73  Identities=29%  Similarity=0.439  Sum_probs=69.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHhhhh
Q 015539           47 QNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA  120 (405)
Q Consensus        47 ~~~~~~~Ih~LE~~AY~sVLrAF~AQS~~lSWeKE~LLTeLR~eL~ISdeEH~~~l~~i~~De~I~~iRe~rq~  120 (405)
                      .++++.+||+||++||++||+||+||+ +||||||+|||+||++||||||||+++|+++.+|+.|++||++..+
T Consensus         7 ~~e~~~~lr~LEleAY~svl~Af~AqG-~LSweke~LLt~LR~~L~IS~eeH~~elrr~~sDe~l~~I~~~~~g   79 (133)
T 2fmm_E            7 RDECKRILRKLELEAYAGVISALRAQG-DLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSG   79 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhHHHHHHHHHhhcC
Confidence            468999999999999999999999995 5999999999999999999999999999999999999999998743

>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.29  E-value=0.00039  Score=55.37  Aligned_cols=54  Identities=20%  Similarity=0.401  Sum_probs=46.6

Q ss_pred             CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccccCCcc
Q 015539          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE  282 (405)
Q Consensus       226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~eispe  282 (405)
                      .--||-+|..+|. |+.||+|+|+..+.. +...++|++. -.|+-...+|+-|+++
T Consensus         9 ~~kvGd~clA~ws-Dg~~Y~A~I~~v~~~-~~~~V~f~Dy-n~e~v~~~~lrplp~~   62 (74)
T 2equ_A            9 DFKAGEEVLARWT-DCRYYPAKIEAINKE-GTFTVQFYDG-VIRCLKRMHIKAMPED   62 (74)
T ss_dssp             CCCTTCEEEEECS-SSSEEEEEEEEESTT-SSEEEEETTS-CEEEECGGGEECCCGG
T ss_pred             CCCCCCEEEEECC-CCCEEEEEEEEECCC-CEEEEEEecC-CeEEecHHHCeeCChh
Confidence            5678999999999 999999999999875 8899999999 6777788888877653

>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}

Probab=97.11  E-value=0.00035  Score=54.99  Aligned_cols=41  Identities=27%  Similarity=0.427  Sum_probs=37.6

Q ss_pred             cccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcc
Q 015539          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  268 (405)
Q Consensus       228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~  268 (405)
                      -||-.|+-|||-|+.||+|.||+++..+-.+.+.|-.+|.+
T Consensus        11 ~vgd~VmaRW~Gd~~yYparI~Si~s~~~~Y~V~fKdgT~e   51 (66)
T 2l8d_A           11 ADGEVVMGRWPGSVLYYEVQVTSYDDASHLYTVKYKDGTEL   51 (66)
T ss_dssp             CSSCEEEEECTTSSCEEEEEEEEEETTTTEEEEEETTSCEE
T ss_pred             ecCCEEEEEcCCCccceEEEEEEeccCCceEEEEecCCCEE
Confidence            36789999999999999999999999999999999998765

>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1

Probab=97.08  E-value=0.00035  Score=55.22  Aligned_cols=41  Identities=24%  Similarity=0.358  Sum_probs=37.5

Q ss_pred             cccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcc
Q 015539          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  268 (405)
Q Consensus       228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~  268 (405)
                      -||-.|+-|||-|+.||+|.||+++..+-.+.+.|-.+|.+
T Consensus        14 ~vgd~VmaRW~Gd~~yYparItSits~~~~Y~VkfKdgT~e   54 (68)
T 2dig_A           14 ADGEVVRGRWPGSSLYYEVEILSHDSTSQLYTVKYKDGTEL   54 (68)
T ss_dssp             CSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEECTTSCEE
T ss_pred             ecCCEEEEEccCCccceEEEEEEeccCCceEEEEecCCCEE
Confidence            37789999999999999999999999999999999997765

>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*

Probab=96.84  E-value=0.0012  Score=49.40  Aligned_cols=54  Identities=24%  Similarity=0.297  Sum_probs=42.3

Q ss_pred             ccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccccCCcc
Q 015539          229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE  282 (405)
Q Consensus       229 IGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~eispe  282 (405)
                      +|-.+..+|.+|+.||.|+|+..+...+...+.|.+---.|+-..-+|+.+++|
T Consensus         6 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~Lr~~~~~   59 (59)
T 1mhn_A            6 VGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICE   59 (59)
T ss_dssp             TTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGCBCTTCC
T ss_pred             cCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHHHeeCCCCC
Confidence            577899999999999999999998877889999977444455555566666543

>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*

Probab=96.52  E-value=0.0038  Score=47.60  Aligned_cols=53  Identities=28%  Similarity=0.419  Sum_probs=41.5

Q ss_pred             CCccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccc
Q 015539          225 YNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLK  277 (405)
Q Consensus       225 ~~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~  277 (405)
                      ...-+|-.+..+|.+|+.||.|+|+..+...+...+.|..---.|+=.+-+|+
T Consensus         7 ~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~e~V~~~~Lr   59 (64)
T 4a4f_A            7 HSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLK   59 (64)
T ss_dssp             SCCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGEE
T ss_pred             CCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEecCCEEEEeHHHcE
Confidence            46678999999999999999999999998888889999775444443333443

>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}

Probab=96.36  E-value=0.0032  Score=49.54  Aligned_cols=41  Identities=24%  Similarity=0.409  Sum_probs=35.8

Q ss_pred             CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcc
Q 015539          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  268 (405)
Q Consensus       226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~  268 (405)
                      .=.||-+|..+| .|+.||+|+|+..+.. +.+.++|+.++.+
T Consensus         6 ~~~vGd~vmArW-~D~~yYpA~I~si~~~-~~Y~V~F~dG~~e   46 (67)
T 3p8d_A            6 EFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQ   46 (67)
T ss_dssp             CCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEE
T ss_pred             ccccCCEEEEEc-CCCCEeeEEEEEECCC-CeEEEEEeCCceE
Confidence            335889999999 9999999999999998 7899999996653

>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1

Probab=96.32  E-value=0.0039  Score=51.01  Aligned_cols=54  Identities=22%  Similarity=0.265  Sum_probs=42.5

Q ss_pred             CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccccC
Q 015539          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI  279 (405)
Q Consensus       226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~ei  279 (405)
                      ..-||-.|..+|.+|+.||.|+|+..+...+...|+|..---.|+-..-+|+-+
T Consensus        10 ~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~~Lrp~   63 (88)
T 1g5v_A           10 QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSP   63 (88)
T ss_dssp             CCCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETTTCCEEEEEGGGCBCC
T ss_pred             CCCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEecCCCEEEEcHHHcccC
Confidence            456788999999999999999999999887889999976555555445555544

>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}

Probab=95.18  E-value=0.00081  Score=54.71  Aligned_cols=49  Identities=24%  Similarity=0.456  Sum_probs=37.7

Q ss_pred             cccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccccC
Q 015539          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI  279 (405)
Q Consensus       228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~ei  279 (405)
                      -+|-+|..+|. |+.||.|+|+..+. .+...++|++++ .|+-.+-+|+-+
T Consensus         8 kvGd~clAkws-Dg~wY~A~I~~v~~-~~~y~V~F~DGn-~E~V~~s~LrPl   56 (81)
T 2ldm_A            8 QINEQVLASWS-DSRFYPAKVTAVNK-DGTYTVKFYDGV-VQTVKHIHVKAF   56 (81)
Confidence            46889999999 99999999999985 468999998854 445445554444

>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}

Probab=96.13  E-value=0.0048  Score=50.73  Aligned_cols=41  Identities=24%  Similarity=0.409  Sum_probs=36.6

Q ss_pred             CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcc
Q 015539          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  268 (405)
Q Consensus       226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~  268 (405)
                      .=.||-+|..+| .|+.||.|.|+..+.. +.+.+.|+.++.+
T Consensus        21 ~f~vGd~VlArW-~D~~yYPAkI~sV~~~-~~YtV~F~DG~~e   61 (85)
T 3qii_A           21 EFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQ   61 (85)
T ss_dssp             CCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEE
T ss_pred             ccccCCEEEEEe-CCCCEeeEEEEEECCC-CeEEEEEeCCCeE
Confidence            557899999999 9999999999999987 7899999996653

>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A

Probab=96.07  E-value=0.0026  Score=55.34  Aligned_cols=43  Identities=26%  Similarity=0.505  Sum_probs=37.8

Q ss_pred             CCccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcc
Q 015539          225 YNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  268 (405)
Q Consensus       225 ~~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~  268 (405)
                      ..++||.+|..+|+++..||-|+|+.+ ...+++.|.+|++...
T Consensus         3 ~~~~~G~rV~AkWsdn~~yYpG~V~~~-~~~~ky~V~FdDg~~~   45 (123)
T 2g3r_A            3 MNSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYEC   45 (123)
T ss_dssp             --CCTTCEEEEECTTTCCEEEEEEEEE-EETTEEEEEETTSCEE
T ss_pred             CccccceEEEEEeccCCcCcccEEEEe-ccCCeEEEEEcCCCee
Confidence            368999999999998889999999984 7889999999999974

>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1

Probab=96.05  E-value=0.0079  Score=47.63  Aligned_cols=57  Identities=19%  Similarity=0.198  Sum_probs=46.9

Q ss_pred             CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccccCCcc
Q 015539          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE  282 (405)
Q Consensus       226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~eispe  282 (405)
                      ..-+|..+..+|.+|+.||.|+|+..+...+...|.|-+---.|+-..-+|+.|+++
T Consensus         9 ~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~~Lr~l~~~   65 (78)
T 2d9t_A            9 VWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQTE   65 (78)
T ss_dssp             CCCTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGGGEEECCCC
T ss_pred             CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHHHeEeCCHH
Confidence            456888999999999999999999998877888888876555566667788888765

>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}

Probab=95.96  E-value=0.0064  Score=48.25  Aligned_cols=57  Identities=21%  Similarity=0.182  Sum_probs=44.4

Q ss_pred             CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccccCCcc
Q 015539          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE  282 (405)
Q Consensus       226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~eispe  282 (405)
                      ..-+|-.+..+|.+|+.||.|+|+..+...+...|.|-+---.|+=..-+|+.|+++
T Consensus        17 ~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~~~Lr~l~~~   73 (77)
T 3pnw_C           17 MWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTE   73 (77)
T ss_dssp             TCCTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEEETTTCCEEEEEGGGEECC---
T ss_pred             CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeHHHeEECChh
Confidence            356788999999999999999999999877788888876554666667777777665

>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*

Probab=95.56  E-value=0.012  Score=43.01  Aligned_cols=39  Identities=18%  Similarity=0.264  Sum_probs=31.1

Q ss_pred             ccceeecccCCCCCceeEEEeecCCCCCceeeeecC-CCc
Q 015539          229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDI-NTA  267 (405)
Q Consensus       229 IGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~-~t~  267 (405)
                      +|-.+..+|.+|+.||.|+|+..+...+...+.|.+ |+.
T Consensus         4 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvDYGn~   43 (54)
T 3s6w_A            4 PGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNY   43 (54)
T ss_dssp             TTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEETTTCCE
T ss_pred             CCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEccCCe
Confidence            577888999999999999999999877778888865 444

>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1

Probab=95.25  E-value=0.014  Score=52.54  Aligned_cols=42  Identities=26%  Similarity=0.519  Sum_probs=38.3

Q ss_pred             CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcc
Q 015539          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  268 (405)
Q Consensus       226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~  268 (405)
                      +++||.||..+|.+++.||-|+|+.+ ...+++.+.+|+|...
T Consensus         8 ~~~iG~rVfArWsd~~yyYpG~V~~~-~~~~~Y~V~FdDG~~k   49 (156)
T 1ssf_A            8 NSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYEC   49 (156)
T ss_dssp             CCSTTCEEEECSSCSSEEEEEEEEEC-CTTTEEEEECTTSCEE
T ss_pred             cchhccEEEEEcCCCCcccccEEEEe-ccCCEEEEEEcCCCee
Confidence            67999999999999999999999996 6678899999999975

>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}

Probab=95.11  E-value=0.013  Score=46.29  Aligned_cols=49  Identities=27%  Similarity=0.519  Sum_probs=42.9

Q ss_pred             cccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccccCCc
Q 015539          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP  281 (405)
Q Consensus       228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~eisp  281 (405)
                      -||.-|..+| .|.-||+|+|+.-|..+|.-.|.|.+|+.-    ||..++|.+
T Consensus        15 ~vGddVLA~w-tDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~----w~~~kdi~~   63 (66)
T 2eqj_A           15 EEGQDVLARW-SDGLFYLGTIKKINILKQSCFIIFEDSSKS----WVLWKDIQT   63 (66)
T ss_dssp             CTTCEEEEEC-TTSCEEEEEEEEEETTTTEEEEEETTTEEE----EEETTTEEC
T ss_pred             cCCCEEEEEE-ccCcEEEeEEEEEccCCcEEEEEEccCCEE----EEEeecccc
Confidence            5788999999 999999999999999999999999999875    777666643

>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.86  E-value=0.081  Score=43.45  Aligned_cols=58  Identities=10%  Similarity=0.070  Sum_probs=47.8

Q ss_pred             cCCccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccccCCcc
Q 015539          224 TYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE  282 (405)
Q Consensus       224 ~~~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~eispe  282 (405)
                      ....-+|.-|..+.+++|.||.|.|..-...+--|-+.||.|+.+ +-.|-+|+.++|.
T Consensus        19 ~~~~k~g~~vaak~~d~n~WyRakV~~v~~~~~veVl~~DyGn~~-~V~~~~LR~L~~~   76 (85)
T 2eqk_A           19 PVKWENDMHCAVKIQDKNQWRRGQIIRMVTDTLVEVLLYDVGVEL-VVNVDCLRKLEEN   76 (85)
T ss_dssp             CCCCCSSCEEEEECSSSCCEEEEEEEEECSSSEEEEECTTTCCEE-EEETTTEEECCHH
T ss_pred             ccCccCCCEEEEEeCCCCeEEEEEEEEecCCCeEEEEEEccCCEE-EEEccccccCCHH
Confidence            345667888899999999999999999999999999999999974 4446667777543

>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1

Probab=92.12  E-value=0.45  Score=38.99  Aligned_cols=55  Identities=18%  Similarity=0.327  Sum_probs=39.4

Q ss_pred             CccccceeecccCCCCCceeEEEeecCCCCCceeeee-cCCCcccchhhhccccCCcc
Q 015539          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVY-DINTADETWEWVNLKEISPE  282 (405)
Q Consensus       226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvY-D~~t~~EtwEWvdL~eispe  282 (405)
                      ..-+|.-+-.+|.+|+.||.|+|+..+.. +.-.|.| |.|+. |+-.+-+|+.+.++
T Consensus        32 ~~~~G~~c~a~~~~d~~wyRA~V~~~~~~-~~~~V~fvDyGn~-e~v~~~~Lr~l~~~   87 (110)
T 2diq_A           32 TVHVGDIVAAPLPTNGSWYRARVLGTLEN-GNLDLYFVDFGDN-GDCPLKDLRALRSD   87 (110)
T ss_dssp             CCCTTCEEEECCTTTCSCEEEEECCCCSS-SCEEEEETTTCCE-EEECGGGCEECCHH
T ss_pred             CCCCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEeCCCe-EEEehHHhhcCcHH
Confidence            45678889999999999999999999874 4444555 55554 44555666766554

>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1

Probab=91.83  E-value=0.17  Score=40.36  Aligned_cols=54  Identities=17%  Similarity=0.298  Sum_probs=38.0

Q ss_pred             CccccceeecccCCCCCceeEEEeecCCCCCceeeee-cCCCcccchhhhccccCCc
Q 015539          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVY-DINTADETWEWVNLKEISP  281 (405)
Q Consensus       226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvY-D~~t~~EtwEWvdL~eisp  281 (405)
                      ..-+|.-+-.+|++|+.||.|.|+.... ++.-.|.| |.|+. |+-..-||+.+.+
T Consensus        27 ~~~~G~~c~a~~~~d~~wyRA~I~~~~~-~~~~~V~fvDyGn~-e~v~~~~lr~l~~   81 (94)
T 3fdr_A           27 TVHVGDIVAAPLPTNGSWYRARVLGTLE-NGNLDLYFVDFGDN-GDCPLKDLRALRS   81 (94)
T ss_dssp             CCCTTCEEEEEETTTTEEEEEEEEEECT-TSCEEEEETTTCCE-EEECGGGCEECCG
T ss_pred             CCCCCCEEEEEECCCCeEEEEEEEEECC-CCeEEEEEEcCCCe-EEEEHHHhhhcCH
Confidence            4568888999999999999999999975 34444555 55554 3444555666654

>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}

Probab=91.22  E-value=0.77  Score=37.28  Aligned_cols=51  Identities=24%  Similarity=0.386  Sum_probs=43.2

Q ss_pred             CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccccCCc
Q 015539          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP  281 (405)
Q Consensus       226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~eisp  281 (405)
                      .=.+|.-|-.+| .|.-||-|+|+.-|...+...|.|++++.-    |+..++|.+
T Consensus        26 ~f~eGeDVLarw-sDGlfYLGTI~kV~~~~e~ClV~F~D~S~~----W~~~kdi~~   76 (79)
T 2m0o_A           26 RLWEGQDVLARW-TDGLLYLGTIKKVDSAREVCLVQFEDDSQF----LVLWKDISP   76 (79)
T ss_dssp             CCCTTCEEEBCC-TTSCCCEEEEEEEETTTTEEEEEETTSCEE----EEETTTBCC
T ss_pred             eeccCCEEEEEe-cCCCEEeEEEEEeccCCCEEEEEEcCCCeE----EEEeecccc
Confidence            445788899999 568999999999999999999999999975    887777754

>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}

Probab=90.03  E-value=0.52  Score=37.46  Aligned_cols=41  Identities=15%  Similarity=0.297  Sum_probs=32.5

Q ss_pred             CCccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcc
Q 015539          225 YNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  268 (405)
Q Consensus       225 ~~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~  268 (405)
                      ..=.+|.-|-.+|=| .-||-|+|++-  .++.-.|.|++++.-
T Consensus        14 ~~~~~geDVL~rw~D-G~fYLGtIVd~--~~~~ClV~FeD~S~~   54 (69)
T 2xk0_A           14 VTYALQEDVFIKCND-GRFYLGTIIDQ--TSDQYLIRFDDQSEQ   54 (69)
T ss_dssp             CCCCTTCEEEEECTT-SCEEEEEEEEE--CSSCEEEEETTCCEE
T ss_pred             cccccCCeEEEEecC-CCEEEEEEEec--CCceEEEEecCCcce
Confidence            345678899999966 89999999774  457777888998874

>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}

Probab=89.25  E-value=0.29  Score=37.75  Aligned_cols=49  Identities=22%  Similarity=0.403  Sum_probs=41.0

Q ss_pred             cccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccccCCc
Q 015539          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP  281 (405)
Q Consensus       228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~eisp  281 (405)
                      -+|..|-.+|-| .-||-|+|..-|...+...+.+++++.-    |+-+++|.+
T Consensus         5 ~~GedVLarwsD-G~fYlGtI~~V~~~~~~clV~F~D~s~~----W~~~kdi~~   53 (58)
T 4hcz_A            5 WEGQDVLARWTD-GLLYLGTIKKVDSAREVCLVQFEDDSQF----LVLWKDISP   53 (58)
T ss_dssp             CTTCEEEEECTT-SCEEEEEEEEEETTTTEEEEEETTSCEE----EEEGGGEEE
T ss_pred             ccCCEEEEEecC-CCEEeEEEEEEecCCCEEEEEEcCCCeE----EEEhHHccc
Confidence            357789999966 8999999999999999999999999875    776666543

>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*

Probab=86.51  E-value=0.32  Score=42.68  Aligned_cols=53  Identities=19%  Similarity=0.333  Sum_probs=38.3

Q ss_pred             CccccceeecccCCCCCceeEEEeecCCCCCceeeee-cCCCcccchhhhccccCCcc
Q 015539          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVY-DINTADETWEWVNLKEISPE  282 (405)
Q Consensus       226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvY-D~~t~~EtwEWvdL~eispe  282 (405)
                      ..-+|..+-.+|++|+.||.|.|+...+.. .-.+.| |.|+.+.   +-+|+.+.++
T Consensus        47 ~~~~G~~c~A~~~~d~~wyRa~I~~~~~~~-~~~V~fvDyGn~~~---v~~lr~l~~~  100 (169)
T 3ntk_A           47 DLKEGALCVAQFPEDEVFYRAQIRKVLDDG-KCEVHFIDFGNNAV---TQQFRQLPEE  100 (169)
T ss_dssp             CCCTTCEEEEEETTTTEEEEEEEEEECSTT-CEEEEETTTTEEEE---ESCEECCCHH
T ss_pred             CCCCCCEEEEEECCCCcEEEEEEEEECCCC-EEEEEEEecCCeEE---hhhhhccCHH
Confidence            344677888999999999999999998854 445555 6676654   3466666543

>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}

Probab=86.01  E-value=0.7  Score=40.84  Aligned_cols=54  Identities=24%  Similarity=0.395  Sum_probs=40.0

Q ss_pred             CccccceeecccCCCCCceeEEEeecCCCCCceeeee-cCCCcccchhhhccccCCcc
Q 015539          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVY-DINTADETWEWVNLKEISPE  282 (405)
Q Consensus       226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvY-D~~t~~EtwEWvdL~eispe  282 (405)
                      ..-+|..+-.+|.+|+.||.|+|+....  +.-.+.| |.|+. |+..+-+|+.++++
T Consensus        51 ~~~~g~~c~a~~~~d~~wyRa~V~~v~~--~~~~V~~vDyG~~-~~v~~~~l~~l~~~  105 (218)
T 2wac_A           51 TPKRGDLVAAQFTLDNQWYRAKVERVQG--SNATVLYIDYGNK-ETLPTNRLAALPPA  105 (218)
T ss_dssp             CCCTTCEEEEECTTTCCEEEEEEEEEET--TEEEEEETTTCCE-EEEEGGGEEECCGG
T ss_pred             cCCcCCEEEEEECCCCeEEEEEEEEecC--CeEEEEEEecCCe-EEEchHHcccCChh
Confidence            3457888999999999999999999876  5555555 44554 45566677777654

>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}

Probab=85.14  E-value=3.3  Score=34.35  Aligned_cols=58  Identities=16%  Similarity=0.272  Sum_probs=42.1

Q ss_pred             cccceeecccCCCCCceeEEEeecCCCC--CceeeeecCCCcccchhhhccccCCcc-CccccC
Q 015539          228 LIGRKVWTRWPEDNHFYEAVITDYNPNE--GRHALVYDINTADETWEWVNLKEISPE-DIKWEG  288 (405)
Q Consensus       228 LIGrkV~~~WPdDn~wyEavItdYn~~t--g~H~LvYD~~t~~EtwEWvdL~eispe-dI~W~~  288 (405)
                      -||-+|..++  ++.||+|.|.+-....  -++-|-|.--+.. -.|||....|.-. +++|..
T Consensus        27 ~vG~kv~v~~--~~~~yeAeIl~ir~~~g~~~YYVHY~g~NkR-lDEWV~~~RI~l~~~v~~p~   87 (94)
T 2rnz_A           27 IIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYNKR-LDEWITTDRINLDKEVLYPK   87 (94)
T ss_dssp             CTTEEEEEEC--SSCEEEEEEEEEECSSSSCEEEEECTTSCST-TCEEEETTTBCSSSCCCCCC
T ss_pred             cCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCcc-cccccCHHHcccccCccCCC
Confidence            5899999997  8899999998866544  3566666655433 3569998888654 477764

>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=83.93  E-value=2.1  Score=34.94  Aligned_cols=64  Identities=16%  Similarity=0.155  Sum_probs=47.8

Q ss_pred             CccccceeecccC---CCCCceeEEEeecCCCCC--ceeeeecCCCcccchhhhccccCCccCccccCCC
Q 015539          226 NPLIGRKVWTRWP---EDNHFYEAVITDYNPNEG--RHALVYDINTADETWEWVNLKEISPEDIKWEGDE  290 (405)
Q Consensus       226 ~~LIGrkV~~~WP---dDn~wyEavItdYn~~tg--~H~LvYD~~t~~EtwEWvdL~eispedI~W~~e~  290 (405)
                      .--||-||..+++   .++.||+|.|.+-+...+  ++-|-|.--+.. -.|||....|.-..++|...+
T Consensus         9 ~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~g~NkR-lDEWV~~~rl~~~~~~~p~~~   77 (87)
T 2eko_A            9 EIIEGCRLPVLRRNQDNEDEWPLAEILSVKDISGRKLFYVHYIDFNRR-LDEWVTHERLDLKKIQFPKKE   77 (87)
T ss_dssp             SCCTTCEEEBCEECTTCCEECCEEEEEEECCSSSCCCEEEEECSSCSC-CCEEECTTTBCGGGCCCCCCS
T ss_pred             cccCCCEEEEEEcccCCCCeEEEEEEEEEEEcCCCcEEEEEeCCCCcc-cccccCHhHcccccccCCCCC
Confidence            4568999999997   588999999999887543  566777655433 247999988877778886533

>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.64  E-value=1  Score=35.15  Aligned_cols=50  Identities=24%  Similarity=0.456  Sum_probs=40.2

Q ss_pred             cccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccccCCcc
Q 015539          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE  282 (405)
Q Consensus       228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~eispe  282 (405)
                      .+|.-|-.+| .|.-||=|+|+.-|...+.-.+.|.+++.-    ||..++|.+-
T Consensus         9 ~eGqdVLarW-sDGlfYlgtV~kV~~~~~~ClV~FeD~s~~----wv~~kdi~~~   58 (63)
T 2e5q_A            9 TEGQYVLCRW-TDGLYYLGKIKRVSSSKQSCLVTFEDNSKY----WVLWKDIQHA   58 (63)
T ss_dssp             CTTCEEEEEC-TTSCEEEEEECCCCSTTSEEEEEETTSCEE----EEEGGGEECC
T ss_pred             ecCCEEEEEe-cCCCEEEEEEEEEecCCCEEEEEEccCcee----EEEeeccccc
Confidence            4677888999 457999999999999888888888888875    7776666443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	405
d1uz3a1	90	a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [T	4e-27
d1mhna_	59	b.34.9.1 (A:) Survival motor neuron protein 1, smn	7e-04
d2d9ta1	60	b.34.9.1 (A:8-67) Tudor domain-containing protein	0.002
d2diqa1	97	b.34.9.1 (A:8-104) Tudor and KH domain-containing	0.002

>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All alpha proteins
fold: ENT-like
superfamily: ENT-like
family: Emsy N terminal (ENT) domain-like
domain: Emsy
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (253), Expect = 4e-27
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 48  NDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNA 107
           ++    +  +E +AY+ V+ A +AQ D +T EK+ L+ EL K L +S E HR  + +   
Sbjct: 4   DECKRILRKLELEAYAGVISALRAQGD-LTKEKKDLLGELSKVLSISTERHRAEVRRAVN 62

Query: 108 DDIILRIREWRKASG 122
           D+ +  I        
Sbjct: 63  DERLTTIAHNMSGPN 77

>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Survival motor neuron protein 1, smn
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 7e-04
 Identities = 13/54 (24%), Positives = 17/54 (31%)

Query: 229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 282
           +G K    W ED   Y A I   +       +VY      E     +L     E
Sbjct: 6   VGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICE 59

>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor domain-containing protein 3, TDRD3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.4 bits (79), Expect = 0.002
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 13/61 (21%)

Query: 232 KVW-------TRWPEDNHFYEAVITDYNPNEGRHALVYDI---NTADETWEWVNLKEISP 281
           KVW         + EDN FY A +   +   G  A+V      N   E     N+K +  
Sbjct: 1   KVWKPGDECFALYWEDNKFYRAEVEALHS-SGMTAVVKFTDYGNY--EEVLLSNIKPVQT 57

Query: 282 E 282
           E
Sbjct: 58  E 58

>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor and KH domain-containing protein TDRKH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 0.002
 Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 1/63 (1%)

Query: 220 SEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI 279
           S        +G  V    P +  +Y A +     N G   L +     +      +L+ +
Sbjct: 19  SVPEDLTVHVGDIVAAPLPTNGSWYRARVLGTLEN-GNLDLYFVDFGDNGDCPLKDLRAL 77

Query: 280 SPE 282
             +
Sbjct: 78  RSD 80

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	405
d1uz3a1	90	Emsy {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2d9ta1	60	Tudor domain-containing protein 3, TDRD3 {Mouse (M	96.23
d2diga1	55	Lamin-b receptor {Human (Homo sapiens) [TaxId: 960	96.23
d1mhna_	59	Survival motor neuron protein 1, smn {Human (Homo	96.12
d2g3ra1	53	p53-binding protein 1, 53BP1 {Human (Homo sapiens)	90.65
d2diqa1	97	Tudor and KH domain-containing protein TDRKH {Huma	90.26
d2hqxa1	90	P100 co-activator, SND1 {Human (Homo sapiens) [Tax	89.67
d1wgsa_	133	Probable histone acetyltransferase MYST1 {Mouse (M	86.17

>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: ENT-like
superfamily: ENT-like
family: Emsy N terminal (ENT) domain-like
domain: Emsy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.4e-24  Score=176.00  Aligned_cols=74  Identities=28%  Similarity=0.430  Sum_probs=70.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHhhhhcC
Q 015539           48 NDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASG  122 (405)
Q Consensus        48 ~~~~~~Ih~LE~~AY~sVLrAF~AQS~~lSWeKE~LLTeLR~eL~ISdeEH~~~l~~i~~De~I~~iRe~rq~gg  122 (405)
                      +++...||+||++||++||+||+||+ +|||+||.|||+||++||||||||+++|+++++|+.|++||++.++..
T Consensus         4 ~e~~~~lR~LEleAY~svl~Af~Aqg-~lsweke~lLt~LR~~L~IS~eeHr~elrr~~~De~l~~I~e~~~G~~   77 (90)
T d1uz3a1           4 DECKRILRKLELEAYAGVISALRAQG-DLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGPN   77 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhccHHHHHHHHHHhcCCC
Confidence            57889999999999999999999995 599999999999999999999999999999999999999999987653

>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor domain-containing protein 3, TDRD3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.23  E-value=0.0024  Score=46.29  Aligned_cols=53  Identities=19%  Similarity=0.249  Sum_probs=39.0

Q ss_pred             ccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccccCCc
Q 015539          229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP  281 (405)
Q Consensus       229 IGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~eisp  281 (405)
                      ||-.+..+|++|+.||.|+|+..++..+...+.|.+---.|+=.=-+|+.|++
T Consensus         5 vG~~c~A~~~~D~~wYRA~I~~i~~~~~~~~V~fvDYGn~e~v~~~~lr~l~~   57 (60)
T d2d9ta1           5 PGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQT   57 (60)
T ss_dssp             TTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGGGEEECCC
T ss_pred             cCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEECCCCEEEEcHHHcCcCCC
Confidence            67788999999999999999999998888888886644333333334444444

>d2diga1 b.34.9.1 (A:8-62) Lamin-b receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Lamin-b receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.0016  Score=47.53  Aligned_cols=41  Identities=27%  Similarity=0.397  Sum_probs=38.2

Q ss_pred             ccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccc
Q 015539          229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADE  269 (405)
Q Consensus       229 IGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~E  269 (405)
                      .|.-|+.|||-.+=|||-.|..||..+-++.+.|.++|+-|
T Consensus         8 ~Ge~vm~RwPgSsLyyev~vls~d~~~~~YtV~ykDGTele   48 (55)
T d2diga1           8 DGEVVRGRWPGSSLYYEVEILSHDSTSQLYTVKYKDGTELE   48 (55)
T ss_dssp             SSCEEEEECTTTCCEEEEEEEEEETTTTEEEEECTTSCEEE
T ss_pred             CCcEEEeecCCCceEEEEEEEeecCcceEEEEEecCCceee
Confidence            56789999999999999999999999999999999999853

>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Survival motor neuron protein 1, smn
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.003  Score=45.78  Aligned_cols=52  Identities=23%  Similarity=0.305  Sum_probs=39.3

Q ss_pred             ccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccccCC
Q 015539          229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEIS  280 (405)
Q Consensus       229 IGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~eis  280 (405)
                      ||-.+..+|.+|+.||.|+|+..++.++.-.+.|-+---.|+=..-||+.+.
T Consensus         6 vG~~C~A~~s~Dg~wYRA~I~~v~~~~~~~~V~fvDYGn~e~V~~~~l~~~~   57 (59)
T d1mhna_           6 VGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPI   57 (59)
T ss_dssp             TTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGCBCTT
T ss_pred             cCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEeCCCEEEEEHHHCcCCC
Confidence            7889999999999999999999988877777777665544444444444443

>d2g3ra1 b.34.9.1 (A:1485-1537) p53-binding protein 1, 53BP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: p53-binding protein 1, 53BP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.65  E-value=0.083  Score=37.60  Aligned_cols=41  Identities=24%  Similarity=0.541  Sum_probs=36.8

Q ss_pred             ccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcc
Q 015539          227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  268 (405)
Q Consensus       227 ~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~  268 (405)
                      ++||-+|-..|-...-||.+.||. |...|+..|.+|+|-+-
T Consensus         1 sfvglrvvakwssn~yfysg~i~r-d~g~~r~rl~fdd~~ec   41 (53)
T d2g3ra1           1 SFVGLRVVAKWSSNGYFYSGKITR-DVGAGKYKLLFDDGYEC   41 (53)
T ss_dssp             CCTTCEEEEECTTTCCEEEEEEEE-EEETTEEEEEETTSCEE
T ss_pred             CceeEEEEEEeecCCEEEeeEEeh-hcCCceEEEEecCCcEE
Confidence            478999999999999999999996 67789999999999764

>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor and KH domain-containing protein TDRKH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.26  E-value=0.12  Score=39.04  Aligned_cols=55  Identities=15%  Similarity=0.207  Sum_probs=36.5

Q ss_pred             CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccccCCc
Q 015539          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP  281 (405)
Q Consensus       226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~eisp  281 (405)
                      ..-+|..+-.+|++|+.||.|+|+..+....-.....|.|+. ++-.+-+|+.+.+
T Consensus        25 ~~~~G~~~~a~~~~d~~wyRa~V~~~~~~~~~~V~~vDyG~~-~~v~~~~l~~l~~   79 (97)
T d2diqa1          25 TVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDN-GDCPLKDLRALRS   79 (97)
T ss_dssp             CCCTTCEEEECCTTTCSCEEEEECCCCSSSCEEEEETTTCCE-EEECGGGCEECCH
T ss_pred             CCCCCCEEEEEECCCCeEEEEEEEEECCCCEEEEEEEeeCCE-EEEeHHHhhccCH
Confidence            345788899999999999999999997643333334466654 3334444444443

>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: P100 co-activator, SND1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.67  E-value=0.16  Score=38.78  Aligned_cols=55  Identities=18%  Similarity=0.311  Sum_probs=36.5

Q ss_pred             CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcccchhhhccccCCcc
Q 015539          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE  282 (405)
Q Consensus       226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~EtwEWvdL~eispe  282 (405)
                      .+-+|--+-.+| .||.||.|.|+..+....-.....|.|+.+ +=.+-+|+.+.++
T Consensus        25 ~p~~G~~c~a~~-~D~~wyRa~V~~~~~~~~~~V~~vDyG~~~-~v~~~~l~~l~~~   79 (90)
T d2hqxa1          25 APRRGEFCIAKF-VDGEWYRARVEKVESPAKIHVFYIDYGNRE-VLPSTRLGTLSPA   79 (90)
T ss_dssp             CCCTTCEEEEEC-TTSCEEEEEEEEEEETTEEEEEETTTCCEE-EECGGGEECCCGG
T ss_pred             CCCCCCEEEEEE-cCCCEEEEEEEEeCCCCeEEEEEEeCCCCE-EEEHHHeeECCHH
Confidence            456788899999 489999999999875433333334777754 3344455666543

>d1wgsa_ b.34.13.3 (A:) Probable histone acetyltransferase MYST1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo barrel domain
domain: Probable histone acetyltransferase MYST1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.17  E-value=1.1  Score=37.04  Aligned_cols=52  Identities=23%  Similarity=0.330  Sum_probs=36.2

Q ss_pred             ccccceeecccCCCCCceeEEEee--cCCCCC--ceeeeecCCCcccchhhhccccCC
Q 015539          227 PLIGRKVWTRWPEDNHFYEAVITD--YNPNEG--RHALVYDINTADETWEWVNLKEIS  280 (405)
Q Consensus       227 ~LIGrkV~~~WPdDn~wyEavItd--Yn~~tg--~H~LvYD~~t~~EtwEWvdL~eis  280 (405)
                      =-||-+|..+|+| +.||+|.|.+  ++...+  ++.|-|+--+.. -.|||....|.
T Consensus        13 ~~vG~~~~v~~~d-g~~~~AkVl~~r~~~~~~~~~yyVHY~g~n~r-~DEWV~~~ri~   68 (133)
T d1wgsa_          13 VEIGETYLCRRPD-STWHSAEVIQSRVNDQEGREEFYVHYVGFNRR-LDEWVDKNRLA   68 (133)
T ss_dssp             CCTTSEEEEEETT-TEEEEEEEEEEEEETTTTEEEEEEECTTTCSS-CCEEECTTTSC
T ss_pred             EecCCEEEEEeCC-CCEeEEEEEEEEecccCCCeEEEEEccCCccc-cceecCHHHcc
Confidence            4689999999985 6899999976  444443  356666544432 34699887774