Citrus Sinensis ID: 015541

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-----
Protein Sequence
MRSLSLSLSVSQIFTKSSTLLFNQTTITRSQRHQSTCRFIRLSFCNPQTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKNPKWNPASLEEVNQSEVEALFEPLGTGVEELKV
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEcccccccccccccHHHHHccccccccccccccccccccccccccEEEEEEcccEEEEEEccccccccccHHHHHHHHHHHHHHHcccccEEEEEEccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccEEEEEccEEEccccEEEccccEEEEccccccccccccccccccccHHHHccccccccccccEEEccccccccHHHHHHHcccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHccccccccHHHHcHHHHHHHccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEHHHHcccccEEEEEccHHHHccccccHHHHHHHccccccccHHHHHccHcccccccccEEEEEEcccEEEEEEccHHHHHHccHHHHHHHHHHHHHHHccccEEEEEEEcccccEEEcccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEcEEEcccccEEEcccEEEEEccEEEcccHccEccccccccccEcccccccccHHHEEEEcccHccHHHHHHHHcccccEccHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHccccEcccEEEccccccccccccHHHccHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
mrslslslsvsQIFTKSSTLLFNQTTITRSQRHQSTCRFIrlsfcnpqtsgnsrTFATMAAAGAEEfvkgnvhpngvaviTLDRPKALNAMNLDMDIKYKSFLdewesdprvkcvliegsgprafcaGMDIKGVVAEIqkdrntplvpkvFTAEYSLICKIseykkpyislmdgvtmgfgigisghgryriVTEKTllampengiglfpdvgfsyiaakgpgggsvGAYLGMtgkristpsdalfaglgtdyvpsgnlgslKEALLAVTFSEDPHQDIVALLAKyssdpegeaplklllpqitscfssEKSVRQIIEELKKHQSSAETSVAQWADEALqgmgkgapfslcLTQKYFSKVAsahgktdnelsknpkwnpasleevnQSEVEALfeplgtgveelkv
Flexible Loop (DISEMBL)
mrslslslsvsqiftksstllfnqttitrsqrhQSTCRFIRLSFCNPQTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIqkdrntplvpkvftAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAhgktdnelsknpkwnpaSLEEVNQSEVEalfeplgtgveelkv
Low Complexity Region (SEG)
MRSLSLSLSVSQIFTKSSTLLFNQTTITRSQRHQSTCRFIRLSFCNPQTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKNPKWNPASLEEVNQSEVEALFEPLGTGVEELKV
Disordered region (IsUnstruct)
***********QIFTKSSTLLFNQTTITRSQRHQSTCRFIRLSFCNPQTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY*********LKLLLPQITSCF**************************WADEALQGMGKGAPFSLCLTQKYFSKV**********************************************
Disordered Region (DISOPRED)
*******************LLF***********************************************GNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY*********LKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKNPKWNPASLEEVNQSEVEALFEPLGT***ELK*
Disordered Region (DISEMBL)
*********VSQIFTKSSTLLFNQTTITRSQRHQSTCRFIRLSFCNPQTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEE***********VAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKNPKWNPASLEEVNQSEVEALFEPLGTGVEELKV
Disordered Region (DISPRO)
****SLSLSVSQIFTKSSTLLFNQTTITRSQRHQS*****RLSF*********************EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKNPKWNPASLEEVNQSEVEALFEPLGT*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRSLSLSLSVSQIFTKSSTLLFNQTTITRSQRHQSTCRFIRLSFCNPQTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKNPKWNPASLEEVNQSEVEALFEPLGTGVEELKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	405	2.2.26 [Sep-21-2011]
Q9T0K7	421	3-hydroxyisobutyryl-CoA h	yes	no	0.948	0.912	0.644	1e-157
Q9LK08	418	3-hydroxyisobutyryl-CoA h	no	no	0.871	0.844	0.662	1e-149
Q6NVY1	386	3-hydroxyisobutyryl-CoA h	yes	no	0.753	0.790	0.358	4e-47
Q8QZS1	385	3-hydroxyisobutyryl-CoA h	yes	no	0.753	0.792	0.355	9e-47
Q5ZJ60	385	3-hydroxyisobutyryl-CoA h	yes	no	0.777	0.818	0.359	9e-47
Q9LKJ1	378	3-hydroxyisobutyryl-CoA h	no	no	0.758	0.812	0.357	3e-46
Q5XIE6	385	3-hydroxyisobutyryl-CoA h	yes	no	0.753	0.792	0.352	9e-46
Q28FR6	385	3-hydroxyisobutyryl-CoA h	yes	no	0.748	0.787	0.390	8e-45
A2VDC2	385	3-hydroxyisobutyryl-CoA h	N/A	no	0.767	0.807	0.382	3e-44
Q6NMB0	378	Probable 3-hydroxyisobuty	no	no	0.760	0.814	0.333	8e-44

>sp|Q9T0K7|HIBC6_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial OS=Arabidopsis thaliana GN=At4g13360 PE=1 SV=2

 Score =  554 bits (1428), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 275/427 (64%), Positives = 320/427 (74%), Gaps = 43/427 (10%)

Query: 13  IFTKSSTLLFNQTTITRSQRHQSTCRFIRLSFCNPQTSGNSRTFATMAAAGAEEFVKGNV 72
           I T S  + F + + T S +   T RF         +  + R F+ MA AG ++FVKGNV
Sbjct: 4   IKTLSHRIFFPKFSQTFSSQFHQTLRF---------SISDRRKFSAMAGAGVDDFVKGNV 54

Query: 73  HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
            PNGVA+ITLDR KALNAMNLDMDIKYKSFLDEWESDPRVKCV++EGS  RAFCAGMDIK
Sbjct: 55  FPNGVALITLDRTKALNAMNLDMDIKYKSFLDEWESDPRVKCVIVEGSTSRAFCAGMDIK 114

Query: 133 GVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
           GV AEIQKD+NTPLV KVFTAEY+LIC I+ YKKPYISLMDG+TMGFG+G+SGHGRYR++
Sbjct: 115 GVAAEIQKDKNTPLVQKVFTAEYTLICAIAAYKKPYISLMDGITMGFGLGLSGHGRYRVI 174

Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
           TE+T+LAMPENGIGLFPDVGFSYIAA  PGGGSVGAYLG+TGKRIS PSDALF GLGT Y
Sbjct: 175 TERTVLAMPENGIGLFPDVGFSYIAAHSPGGGSVGAYLGLTGKRISAPSDALFVGLGTHY 234

Query: 253 VPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSV 312
           VPS  L SLKEA+L+   SEDP+QDI A L+KYSS+PE EA LK LLP I S FSS KS+
Sbjct: 235 VPSEKLASLKEAILSANLSEDPNQDIQATLSKYSSNPESEAHLKSLLPHIESAFSSNKSI 294

Query: 313 RQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELS- 371
           ++ IEELKK+Q S E+SV +WA+EAL+G+ KGAPFSL LTQKYFS VA A  K +NEL+ 
Sbjct: 295 KETIEELKKYQQSTESSVVEWANEALKGLEKGAPFSLYLTQKYFSNVACAKSKPENELAT 354

Query: 372 ---------------------------------KNPKWNPASLEEVNQSEVEALFEPLGT 398
                                            +NPKWNP S+EEV+++EVEALF+PL  
Sbjct: 355 LNGVMKTEYRIALRSALRGDFAEGVRAVLIDKDQNPKWNPTSIEEVDENEVEALFKPLSP 414

Query: 399 GVEELKV 405
            VEELKV
Sbjct: 415 EVEELKV 421

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 2EC: .EC: -

>sp|Q9LK08|HIBC7_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 4, mitochondrial OS=Arabidopsis thaliana GN=At3g24360 PE=2 SV=1

 Score =  527 bits (1357), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 257/388 (66%), Positives = 303/388 (78%), Gaps = 35/388 (9%)

Query: 52  NSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPR 111
           + R F+ MA+ G++EFVKGNV+PNGVA+ITLDRPKALNAMNL+MD+KYKS LDEWE DP 
Sbjct: 32  HRRKFSVMAS-GSDEFVKGNVYPNGVALITLDRPKALNAMNLEMDLKYKSLLDEWEYDPG 90

Query: 112 VKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISL 171
           VKCV++EGS  RAFCAGMDIKGVVAEI  D+NT LV KVFTAEYSLICKI+ Y+KPYISL
Sbjct: 91  VKCVVVEGSTSRAFCAGMDIKGVVAEILMDKNTSLVQKVFTAEYSLICKIAGYRKPYISL 150

Query: 172 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLG 231
           MDG+TMGFG+G+SGHGRYR++TE+T+LAMPENGIGLFPDVGFSYIAA  PG GSVGAYLG
Sbjct: 151 MDGITMGFGLGLSGHGRYRVITERTVLAMPENGIGLFPDVGFSYIAAHSPGEGSVGAYLG 210

Query: 232 MTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEG 291
           MTG+RISTPSDALF GLGT YVPSG LGSL+EA+L+   S+DP Q I A L+ YSSDPE 
Sbjct: 211 MTGRRISTPSDALFVGLGTHYVPSGKLGSLREAILSADLSKDPQQHIQATLSNYSSDPET 270

Query: 292 EAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCL 351
           E+ L++LLPQI S FS  KSV++ IEELKK Q S+E SVA+WA+EA+QG+ KGAPFSL L
Sbjct: 271 ESHLQMLLPQIESAFSVSKSVKETIEELKKFQQSSEASVAEWANEAVQGIEKGAPFSLYL 330

Query: 352 TQKYFSKVASAHGKTDNELS----------------------------------KNPKWN 377
           T KYFSKVA A GKT+N ++                                  +NPKW 
Sbjct: 331 THKYFSKVACAKGKTNNAMATLNGVMITEYRIALRSALRSDFTEGVRAVLTDKDQNPKWK 390

Query: 378 PASLEEVNQSEVEALFEPLGTGVEELKV 405
           PASL+EV+++EV+ALF PL    EEL V
Sbjct: 391 PASLDEVDETEVDALFMPLSPEFEELNV 418

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: -

>sp|Q6NVY1|HIBCH_HUMAN 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Homo sapiens GN=HIBCH PE=1 SV=2

 Score =  189 bits (479), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 125/349 (35%), Positives = 189/349 (54%), Gaps = 44/349 (12%)

Query: 79  VITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEI 138
           VITL+RPK LNA+ L+M  +    L +WE DP    ++I+G+G +AFCAG DI+ V++E 
Sbjct: 48  VITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIR-VISEA 106

Query: 139 QKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL 198
           +K +   + P  F  EY L   +   +KPY++L+ G+TMG G+G+S HG++R+ TEK L 
Sbjct: 107 EKAKQ-KIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLF 165

Query: 199 AMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNL 258
           AMPE  IGLFPDVG  Y   +    G +G +L +TG R+    D   AG+ T +V S  L
Sbjct: 166 AMPETAIGLFPDVGGGYFLPRLQ--GKLGYFLALTGFRLKG-RDVYRAGIATHFVDSEKL 222

Query: 259 GSLKEALLAVTFSEDPHQDIVALLAKYSS----DPEGEAPLKLLLPQITSCFSSEKSVRQ 314
             L+E LLA+       ++I ++L  Y +    D +    L+  + +I SCFS+  +V +
Sbjct: 223 AMLEEDLLAL--KSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSCFSA-NTVEE 279

Query: 315 IIEELKKHQSSAETSVAQWADEALQGMGKGAPFSL-----------------CLTQKYFS 357
           IIE L++  SS       +A E L+ + K +P SL                  LT +Y  
Sbjct: 280 IIENLQQDGSS-------FALEQLKVINKMSPTSLKITLRQLMEGSSKTLQEVLTMEYRL 332

Query: 358 KVASAHGKTDNE--------LSKNPKWNPASLEEVNQSEVEALFEPLGT 398
             A   G   +E          ++PKW PA L+EV + ++   F+ LG+
Sbjct: 333 SQACMRGHDFHEGVRAVLIDKDQSPKWKPADLKEVTEEDLNNHFKSLGS 381

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q8QZS1|HIBCH_MOUSE 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Mus musculus GN=Hibch PE=1 SV=1

 Score =  187 bits (476), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 124/349 (35%), Positives = 189/349 (54%), Gaps = 44/349 (12%)

Query: 79  VITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEI 138
           VITL+RPK LNA++L+M  +    L  WE DP    ++I+G+G +AFCAG DIK + +E 
Sbjct: 47  VITLNRPKFLNALSLNMIRQIYPQLKTWEQDPDTFLIIIKGAGGKAFCAGGDIKAL-SEA 105

Query: 139 QKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL 198
           +K R   L   +F  EY L   I+  +KPY++L+DG+TMG G+G+S HG++R+ TE++L 
Sbjct: 106 KKARQN-LTQDLFREEYILNNAIASCQKPYVALIDGITMGGGVGLSVHGQFRVATERSLF 164

Query: 199 AMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNL 258
           AMPE GIGLFPDVG  Y   +  G   +G +L +TG R+    D   AG+ T +V S  L
Sbjct: 165 AMPETGIGLFPDVGGGYFLPRLQG--KLGYFLALTGYRLKG-RDVHRAGIATHFVDSEKL 221

Query: 259 GSLKEALLAVTFSEDPHQDIVALLAKYSS----DPEGEAPLKLLLPQITSCFSSEKSVRQ 314
             L+E LLA+       +D+  +L  Y +    D +     +  + +I SCFS+  +V Q
Sbjct: 222 RVLEEELLAL--KSPSAEDVAGVLESYHAKSKMDQDKSIIFEEHMDKINSCFSA-NTVEQ 278

Query: 315 IIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQK-----------------YFS 357
           IIE L++  S        +A E ++ + K +P SL +T +                 Y  
Sbjct: 279 IIENLRQDGSP-------FAIEQMKVINKMSPTSLKITLRQLMEGSSKTLQEVLIMEYRI 331

Query: 358 KVASAHGKTDNE--------LSKNPKWNPASLEEVNQSEVEALFEPLGT 398
             A   G   +E          + PKW PA+L++V   ++ + F+ LG+
Sbjct: 332 TQACMEGHDFHEGVRAVLIDKDQTPKWKPANLKDVTDEDLNSYFKSLGS 380

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q5ZJ60|HIBCH_CHICK 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Gallus gallus GN=HIBCH PE=2 SV=1

 Score =  187 bits (476), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 124/345 (35%), Positives = 185/345 (53%), Gaps = 30/345 (8%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           G  +ITL+RPK LNA++  M  +    +  WE DP    ++I+G+G +AFCAG D++ + 
Sbjct: 44  GAGIITLNRPKVLNALSFKMIQQIYPQIKAWEQDPETFLIIIKGTGEKAFCAGGDVRAI- 102

Query: 136 AEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK 195
           A+  K  +T +    F  EY L   I   KKPY++L+DG+TMG G+G+S HG +R+ TEK
Sbjct: 103 ADAGKAGDT-MTRDYFREEYRLDNAIGTCKKPYVALIDGITMGGGVGLSVHGHFRVATEK 161

Query: 196 TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS 255
           T+ AMPE  IGLFPDVG  Y   +    G +G  L +TG R+    D L AG+ T +V S
Sbjct: 162 TVFAMPETAIGLFPDVGGGYFLPR--LSGKIGHLLALTGFRLKG-RDVLKAGIATHFVES 218

Query: 256 GNLGSLKEALLAVTFSEDPHQDIVALLAKYSS----DPEGEAPLKLLLPQITSCFSSEKS 311
           G L  L++ L+A+       ++I  LL  Y      D E E  L   + +I S FS+  S
Sbjct: 219 GKLPELEKDLIAL--KSPSKENIADLLNSYHMQTKIDQEKEFVLDEHMERINSIFSA-NS 275

Query: 312 VRQIIEELKKHQSSAETSVAQWADE--------ALQGMGKGAPFSL--CLTQKYFSKVAS 361
           + +I+++LK+  S   T   +  ++         L+ + +GA  SL    T +Y    A 
Sbjct: 276 MEEIVQKLKQDGSPFATKQLEAINKMSPTSLKLTLRQLREGATMSLQDVFTMEYRLSQAC 335

Query: 362 AHGKTDNE--------LSKNPKWNPASLEEVNQSEVEALFEPLGT 398
             G    E          ++P+W PA+LEEV+   V+  F+PLG 
Sbjct: 336 MRGHDFYEGVRAVLIDKDQSPRWKPAALEEVSDEFVDNCFKPLGN 380

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q9LKJ1|HIBC1_ARATH 3-hydroxyisobutyryl-CoA hydrolase 1 OS=Arabidopsis thaliana GN=CHY1 PE=1 SV=1

 Score =  186 bits (472), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 124/347 (35%), Positives = 176/347 (50%), Gaps = 40/347 (11%)

Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V ++TL+RPK LNA++  M  +       +E DP VK V+++G G RAFCAG D+  VV 
Sbjct: 19  VRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHG-RAFCAGGDVAAVVR 77

Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
           +I +  N  L    F++EY L   ++ Y K  +S+++G+ MG G G+S HGR+RI TE T
Sbjct: 78  DINQG-NWRLGANYFSSEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENT 136

Query: 197 LLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSG 256
           + AMPE  +GLFPDVG SY  ++ P  G  G Y+G+TG R+   ++ L  GL T +VPS 
Sbjct: 137 VFAMPETALGLFPDVGASYFLSRLP--GFFGEYVGLTGARLDG-AEMLACGLATHFVPST 193

Query: 257 NLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPE-GEAPLKLLLPQITSCFSSEKSVRQI 315
            L +L EA L    S DP      +L  Y+  P   +      L  I  CF S ++V +I
Sbjct: 194 RLTAL-EADLCRINSNDP-TFASTILDAYTQHPRLKQQSAYRRLDVIDRCF-SRRTVEEI 250

Query: 316 IEELKKHQSSAETSVAQWADEALQGMGKGAPFSL-----------------CLTQKYFSK 358
           I  L++    A      W    +Q + KG+P SL                 CL ++Y   
Sbjct: 251 ISALERE---ATQEADGWISATIQALKKGSPASLKISLRSIREGRLQGVGQCLIREYRMV 307

Query: 359 VASAHGKTDNEL-----------SKNPKWNPASLEEVNQSEVEALFE 394
                G+   +             KNPKW P  LE++  S VE  FE
Sbjct: 308 CHVMKGEISKDFVEGCRAILVDKDKNPKWEPRRLEDMKDSMVEQYFE 354

Involved in valine catabolism. May be indirectly involved in benzoic acid biosynthesis and in cold signaling and cold tolerance.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q5XIE6|HIBCH_RAT 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Rattus norvegicus GN=Hibch PE=1 SV=2

 Score =  184 bits (468), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 123/349 (35%), Positives = 189/349 (54%), Gaps = 44/349 (12%)

Query: 79  VITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEI 138
           VITL+RPK LNA++L+M  +    L +WE DP    ++I+G+G +AFCAG DIK + +E 
Sbjct: 47  VITLNRPKLLNALSLNMIRQIYPQLKKWERDPDTFLIIIKGAGGKAFCAGGDIKAL-SEA 105

Query: 139 QKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL 198
           +K   T L   +F  EY L   I+  +KPY++L+DG+TMG G+G+S HG++R+ TE++L 
Sbjct: 106 KKAGQT-LSQDLFREEYILNNAIASCQKPYVALIDGITMGGGVGLSVHGQFRVATERSLF 164

Query: 199 AMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNL 258
           AMPE GIGLFPDVG  Y   +    G +G +L +TG R+    D   AG+ T +V S  L
Sbjct: 165 AMPETGIGLFPDVGGGYFLPRLQ--GKLGYFLALTGFRLKG-RDVHRAGIATHFVDSEKL 221

Query: 259 GSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLL----LPQITSCFSSEKSVRQ 314
             L+E LLA+       +D+  +L  Y +  +      ++    + +I SCFS+  +V Q
Sbjct: 222 HVLEEELLAL--KSPSAEDVAGVLESYHAKSKMGQDKSIIFEEHMDKINSCFSA-NTVEQ 278

Query: 315 IIEELKKHQSSAETSVAQWADEALQGMGKGAPFSL-----------------CLTQKYFS 357
           I+E L++  S        +A E ++ + K +P SL                  LT +Y  
Sbjct: 279 ILENLRQDGSP-------FAMEQIKVINKMSPTSLKITLRQLMEGSTKTLQEVLTMEYRL 331

Query: 358 KVASAHGKTDNE--------LSKNPKWNPASLEEVNQSEVEALFEPLGT 398
             A   G   +E          + PKW PA L++V   ++ + F+ LG+
Sbjct: 332 TQACMEGHDFHEGVRAVLIDKDQTPKWKPADLKDVTDEDLNSYFKSLGS 380

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q28FR6|HIBCH_XENTR 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus tropicalis GN=hibch PE=2 SV=1

 Score =  181 bits (459), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 137/351 (39%), Positives = 181/351 (51%), Gaps = 48/351 (13%)

Query: 79  VITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV-AE 137
           VITL+RPKALNA+NL M       L  WE DP    V+I+G G +AFCAG DI+ V  A 
Sbjct: 47  VITLNRPKALNALNLGMIRLIYPQLGLWEEDPETYLVIIKGVGGKAFCAGGDIRAVTDAG 106

Query: 138 IQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTL 197
              DR   L    F  EY L   I  YKKPY++L+DG+TMG G+G+S HG +R+ +E TL
Sbjct: 107 KAGDR---LAQDFFREEYILNNAIGTYKKPYVALIDGITMGGGVGLSVHGHFRVASENTL 163

Query: 198 LAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGN 257
            AMPE  IGLFPDVG  Y   + P  G +G YL +TG R+   SD   AG+ T +V S  
Sbjct: 164 FAMPETAIGLFPDVGGGYFLPRLP--GKLGLYLALTGFRLKG-SDVQKAGIATHFVESEK 220

Query: 258 LGSLKEALLAVTFSEDPHQDIVA-LLAKY--SSDPEGEAPLKLL--LPQITSCFSSEKSV 312
           + SL++ L+A+   + P ++ VA +L  Y   S    + P  L   L +I S FS+  SV
Sbjct: 221 IPSLEQDLVAM---KCPSKENVADVLDSYHNKSYAAQDKPFVLAEHLDKINSLFSAS-SV 276

Query: 313 RQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSL-----------------CLTQKY 355
             IIE L+   SS       +A + LQ +   +P SL                  LT +Y
Sbjct: 277 EAIIENLRCDGSS-------FALKQLQTLSTMSPTSLKITFRQLKEGSSMSLQEVLTMEY 329

Query: 356 FSKVASAHGKTDNE--------LSKNPKWNPASLEEVNQSEVEALFEPLGT 398
               A   G    E         ++N KWNP  LEEV    +++ F  LG 
Sbjct: 330 RLSQACMKGYDFYEGVRAVLIDKNQNAKWNPELLEEVTDDYIDSYFTSLGN 380

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|A2VDC2|HIBCH_XENLA 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus laevis GN=hibch PE=2 SV=1

 Score =  179 bits (455), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 132/345 (38%), Positives = 181/345 (52%), Gaps = 34/345 (9%)

Query: 78  AVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV-A 136
            VITL+RPKALNA+NL M  +    L  WE DP    V+I+G+G +AFCAG DI+ V  A
Sbjct: 46  GVITLNRPKALNALNLGMIRQIYPQLKLWEEDPETYLVIIKGAGGKAFCAGGDIRAVTDA 105

Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
               DR   L    F  EY L   I   KKPY++++DG+TMG G+G+S HG +R+ +EKT
Sbjct: 106 GKVGDR---LAQDFFREEYILNNAIGTCKKPYVAVIDGITMGGGVGLSVHGHFRVASEKT 162

Query: 197 LLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSG 256
           L AMPE  IGLFPDVG  Y   +    G +G YL +TG R+   SD   AG+ T +V S 
Sbjct: 163 LFAMPETAIGLFPDVGGGYFLPRLT--GKLGLYLALTGFRLK-GSDVQKAGIATHFVESE 219

Query: 257 NLGSLKEALLAVTFSEDPHQDIVA-LLAKYS--SDPEGEAPLKLL--LPQITSCFSSEKS 311
            L SL++ L+A+   + P ++ VA +L  Y   S    + P  L   + +I S FS   +
Sbjct: 220 KLSSLEQDLVAM---KSPSKENVADVLDSYQKKSYAAQDKPFVLAENMDKINSLFSG-NT 275

Query: 312 VRQIIEELKKHQSSAETSVAQWADE--------ALQGMGKGAPFSL--CLTQKYFSKVAS 361
           V +I+E LK   SS      Q              + + +GA  SL   LT +Y    A 
Sbjct: 276 VEEIMENLKCDGSSFAMKQLQTLSTMSPTSLKITFRQLKEGASMSLQEVLTMEYRLSQAC 335

Query: 362 AHGKTDNE--------LSKNPKWNPASLEEVNQSEVEALFEPLGT 398
            +G    E          +  KW P SLEEV +  +++ F  LG+
Sbjct: 336 MNGHDFYEGVRAVLIDKDQKAKWKPESLEEVTEDYIDSCFTSLGS 380

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q6NMB0|HIBC3_ARATH Probable 3-hydroxyisobutyryl-CoA hydrolase 3 OS=Arabidopsis thaliana GN=At2g30660 PE=2 SV=1

 Score =  178 bits (451), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 116/348 (33%), Positives = 179/348 (51%), Gaps = 40/348 (11%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + V ++TL+RPK LNA+  +M  +       +E DP VK V+++G G RAFCAG D+  V
Sbjct: 13  SSVRILTLNRPKQLNALCFNMISRLLQLFRAYEEDPSVKLVILKGQG-RAFCAGGDVPPV 71

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
           V  + + +   L    F  +Y+L   ++ Y KP +S+++G+ MG G G+S HGR+RI TE
Sbjct: 72  VQNMVQGK-WRLGADFFRDQYTLNYVMATYSKPQVSILNGIVMGAGAGVSIHGRFRIATE 130

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVP 254
            T+ AMPE  +GLFPDVG SY  ++ P  G  G Y+G+TG R+   ++ L  GL T +VP
Sbjct: 131 NTVFAMPETSLGLFPDVGASYFLSRLP--GFFGEYVGLTGARLDG-AELLACGLATHFVP 187

Query: 255 SGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPE-GEAPLKLLLPQITSCFSSEKSVR 313
           S  L +L+  L  V  S DP   +  +L  Y+  P   +      L  I  CF S++++ 
Sbjct: 188 STRLTALETDLCKVG-SSDP-SFVSTILDAYTQHPHLKQKSAYHRLDVIDRCF-SKRTME 244

Query: 314 QIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSL-----------------CLTQKYF 356
           +II  L++  +     +  W+   ++ + K +P SL                 CLT++Y 
Sbjct: 245 EIISALERETTQ---ELDDWSLTTIRALKKSSPSSLKISLRSIREGRLQGVGHCLTREYR 301

Query: 357 SKVASAHGKTDNEL-----------SKNPKWNPASLEEVNQSEVEALF 393
                  G    +L            +NPKW P  LE++  S V+  F
Sbjct: 302 MVCHVMKGDLSKDLVEGCRAILIDKDRNPKWEPRRLEDMKDSMVDQFF 349

Involved in valine catabolism.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
359484612	425	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	0.965	0.92	0.676	1e-160
449443139	424	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	0.933	0.891	0.658	1e-159
356513119	408	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	0.888	0.882	0.695	1e-157
224088081	380	predicted protein [Populus trichocarpa]	0.846	0.902	0.713	1e-156
118489716	382	unknown [Populus trichocarpa x Populus d	0.844	0.895	0.715	1e-156
356524057	408	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	0.888	0.882	0.688	1e-156
297790718	418	hypothetical protein ARALYDRAFT_332986 [	0.896	0.868	0.680	1e-155
79473201	421	3-hydroxyisobutyryl-CoA hydrolase-like p	0.948	0.912	0.644	1e-155
297738862	407	unnamed protein product [Vitis vinifera]	0.856	0.852	0.683	1e-155
255549046	416	3-hydroxybutyryl-CoA dehydratase, putati	0.943	0.918	0.630	1e-155

>gi|359484612|ref|XP_003633131.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial-like isoform 2 [Vitis vinifera]

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 297/439 (67%), Positives = 332/439 (75%), Gaps = 48/439 (10%)

Query: 1   MRSLSLSLSVSQIFTKSSTLLFNQTTITRSQRHQSTCRFIRLSFCNPQTSGNSRTFATMA 60
           MRSL   +  SQ+  +SSTL   +   + SQ          L F   +TS + R  ATMA
Sbjct: 1   MRSL---VGASQLLNRSSTLFLFRGPKSHSQY---------LHFG--KTSSSLRGLATMA 46

Query: 61  AAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS 120
           AA AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDI+YK FLDEWE DP VKCVL+EGS
Sbjct: 47  AAAAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIRYKKFLDEWEMDPMVKCVLVEGS 106

Query: 121 GPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFG 180
             RAF AGMDIKGVVAEIQKD+ TPLV KVFTAEYSLICKISEYKKPYISLMDG+TMGFG
Sbjct: 107 SSRAFSAGMDIKGVVAEIQKDKTTPLVQKVFTAEYSLICKISEYKKPYISLMDGITMGFG 166

Query: 181 IGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTP 240
           IG+SGHGRYRIVTE+TLLAMPENGIGLFPDVGF+YIAA+ PG GSVGAYLGMTGKRIST 
Sbjct: 167 IGLSGHGRYRIVTERTLLAMPENGIGLFPDVGFAYIAAQSPGEGSVGAYLGMTGKRISTS 226

Query: 241 SDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLP 300
           +DAL+ GLGT YVPSGNL SLKEALL  +FSEDPHQDI  LL KYS DPE EA LKLLLP
Sbjct: 227 ADALYVGLGTHYVPSGNLSSLKEALLTTSFSEDPHQDIRELLVKYSHDPESEAQLKLLLP 286

Query: 301 QITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA 360
           QI S FS++KSV +IIEELKKHQ S +  V++WA EAL G+GKGAPFSLCLTQK+FS+VA
Sbjct: 287 QIVSTFSADKSVNEIIEELKKHQLSTDAIVSEWAKEALLGLGKGAPFSLCLTQKHFSRVA 346

Query: 361 SAHGKTDNEL----------------------------------SKNPKWNPASLEEVNQ 386
            A GK D++L                                   + PKWNP+SLEEV+ 
Sbjct: 347 LARGKNDSDLCSLSGVMKTEYRIALRSSLRNDFAEGVRAVLVDKDQKPKWNPSSLEEVDL 406

Query: 387 SEVEALFEPLGTGVEELKV 405
           +EVEA+FEPL  G EEL+V
Sbjct: 407 NEVEAVFEPLSQGTEELRV 425

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443139|ref|XP_004139338.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial-like [Cucumis sativus] gi|449518115|ref|XP_004166089.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial-like [Cucumis sativus]

 Score =  567 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 280/425 (65%), Positives = 323/425 (76%), Gaps = 47/425 (11%)

Query: 6   LSLSVSQIFTKSSTLLFNQTTITRSQRHQSTCRFIRLSFCNPQTSGNSRTFATMAAAGAE 65
           L  + SQ   KSSTL  +QT  + +  H  +    R            RT A MA    +
Sbjct: 5   LGFTASQFLFKSSTLPLSQTLPSLTLFHIHSNSVSR------------RTLAAMAGTD-D 51

Query: 66  EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAF 125
           +FVKG+VHPNGVAVITLDRPKALNAMNLDMDI+YK +LDEWE DPRVKCVL+EGS  RAF
Sbjct: 52  QFVKGSVHPNGVAVITLDRPKALNAMNLDMDIQYKKYLDEWEEDPRVKCVLVEGSSSRAF 111

Query: 126 CAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISG 185
           CAGMDIKGVVAEIQKD+NT LV KVFTAEYSLICKIS YKKPY+S MDG+TMGFGIG+SG
Sbjct: 112 CAGMDIKGVVAEIQKDKNTSLVQKVFTAEYSLICKISNYKKPYLSFMDGITMGFGIGLSG 171

Query: 186 HGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALF 245
           HGRYRI+TE+TLLAMPENGIGLFPDVGFSYIAA+GPG GSVGAYLG+TG+RIS+PSDAL+
Sbjct: 172 HGRYRIITERTLLAMPENGIGLFPDVGFSYIAAQGPGEGSVGAYLGLTGRRISSPSDALY 231

Query: 246 AGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSC 305
            GLGT YVPSGNLGSLKE LL  TFSEDPHQDI  LLAKYSSDPE    LKLLLPQITS 
Sbjct: 232 VGLGTHYVPSGNLGSLKEGLLTATFSEDPHQDINTLLAKYSSDPESPPSLKLLLPQITSS 291

Query: 306 FSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGK 365
           F + KSV++ +EELKKHQ  + +SV +WA E+LQG+GKGAPFSL LTQKYFSKVA+AHGK
Sbjct: 292 FGTNKSVKETVEELKKHQLDSSSSVVEWAKESLQGIGKGAPFSLALTQKYFSKVAAAHGK 351

Query: 366 TDNELS----------------------------------KNPKWNPASLEEVNQSEVEA 391
           +++ELS                                  +NPKWNP++LE+V++ EV++
Sbjct: 352 SNDELSTLNGVMRTEYRIALRSSLRNDFAEGVRAVLVDKDQNPKWNPSTLEDVDEKEVDS 411

Query: 392 LFEPL 396
           LFEPL
Sbjct: 412 LFEPL 416

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513119|ref|XP_003525261.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial-like isoform 1 [Glycine max]

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 277/398 (69%), Positives = 312/398 (78%), Gaps = 38/398 (9%)

Query: 42  LSFCNPQTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKS 101
           L+F   Q S + R F+ MA    EEFVKG VH NGVAVITLDRPKALNAMNLDMD+KYKS
Sbjct: 15  LTFSRFQPSFSLRAFSAMA----EEFVKGTVHQNGVAVITLDRPKALNAMNLDMDVKYKS 70

Query: 102 FLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKI 161
           +LDEWESDPRVKCVL++ S PRAFCAGMDIKGVVAEIQKD+NTPLV KVFTAEYSLICKI
Sbjct: 71  YLDEWESDPRVKCVLVDSSSPRAFCAGMDIKGVVAEIQKDKNTPLVQKVFTAEYSLICKI 130

Query: 162 SEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGP 221
           S+YKKPYIS MDG+TMGFGIG+SGHGRYRI+TE+T+LAMPENGIGLFPDVGF++IAA+ P
Sbjct: 131 SDYKKPYISFMDGITMGFGIGLSGHGRYRIITERTVLAMPENGIGLFPDVGFAHIAAQSP 190

Query: 222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL 281
           G GSVGAYLG+TGKRISTPSDA++ GLGT YVPSG LGS KEALLA  FS+DPHQDI  L
Sbjct: 191 GEGSVGAYLGLTGKRISTPSDAIYLGLGTHYVPSGKLGSFKEALLATNFSQDPHQDIKVL 250

Query: 282 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGM 341
           LA+Y S+PE EA LKLLLPQI S F   KSV +IIEELKKHQSS + +V +WA+EALQG+
Sbjct: 251 LARYESNPESEAQLKLLLPQIVSTFGGNKSVTEIIEELKKHQSSTDPNVVEWANEALQGL 310

Query: 342 GKGAPFSLCLTQKYFSKVASAHGKTDNELS------------------------------ 371
           GKGAPFSL LT KYFS VASA G  D ELS                              
Sbjct: 311 GKGAPFSLFLTYKYFSLVASAVGNNDGELSTLSGVMKTEYRIALRSSLRHDFSEGVRAVL 370

Query: 372 ----KNPKWNPASLEEVNQSEVEALFEPLGTGVEELKV 405
               +NPKW P+SLEEV+ SEVEA+F+PLG  V EL+V
Sbjct: 371 VAKDQNPKWKPSSLEEVDPSEVEAVFKPLGPEVGELRV 408

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088081|ref|XP_002308317.1| predicted protein [Populus trichocarpa] gi|222854293|gb|EEE91840.1| predicted protein [Populus trichocarpa]

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 269/377 (71%), Positives = 303/377 (80%), Gaps = 34/377 (9%)

Query: 59  MAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIE 118
           MAAA  +EFVKGN+HPNGVAV+TLDRPKALNAMNLDMDIKYK+F+DEWESDPRV+CVL+E
Sbjct: 1   MAAAAVDEFVKGNIHPNGVAVLTLDRPKALNAMNLDMDIKYKTFMDEWESDPRVRCVLVE 60

Query: 119 GSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMG 178
           GS PRAFCAGMDIKGVVAEI+KD+NTP+V KVFTAEYSLICKISEYKKPY+SLMDGVTMG
Sbjct: 61  GSSPRAFCAGMDIKGVVAEIRKDKNTPVVQKVFTAEYSLICKISEYKKPYVSLMDGVTMG 120

Query: 179 FGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRIS 238
           FGIG+SGHGRYRIVTE+T+LAMPENGIGLFPDVGFSYIAAK PG GSVG YL +TGKRIS
Sbjct: 121 FGIGLSGHGRYRIVTERTVLAMPENGIGLFPDVGFSYIAAKSPGEGSVGNYLALTGKRIS 180

Query: 239 TPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLL 298
           TPSDALF GLG+ YVPSGNL  LKEALL +TFS DPHQDI ALLA+Y  DPE E+ LK L
Sbjct: 181 TPSDALFVGLGSHYVPSGNLVQLKEALLQITFSNDPHQDINALLAEYGHDPESESQLKSL 240

Query: 299 LPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSK 358
           LP+I S F   KSV +IIE+LK HQ SA+  V +WA++ALQG+GKGAPFSLCLTQKYFS+
Sbjct: 241 LPRIISTFGPNKSVEEIIEKLKSHQLSADRKVVEWANDALQGIGKGAPFSLCLTQKYFSR 300

Query: 359 VASAHGKTDNELS----------------------------------KNPKWNPASLEEV 384
           VA A GK  NELS                                  + PKWNP+SLEEV
Sbjct: 301 VAFAFGKISNELSTLSGVMKTEYRIALRSSLRNDFAEGVRAVLVDKDQKPKWNPSSLEEV 360

Query: 385 NQSEVEALFEPLGTGVE 401
           +QSE+E+LF+PL    E
Sbjct: 361 DQSEIESLFKPLSPEAE 377

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489716|gb|ABK96659.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 269/376 (71%), Positives = 301/376 (80%), Gaps = 34/376 (9%)

Query: 60  AAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEG 119
           AAA  +EFVKGN+HPNGVAV+TLDRPKALNAMNLDMDIKYK+F+DEWESDPRVKCVL+EG
Sbjct: 4   AAAAVDEFVKGNIHPNGVAVLTLDRPKALNAMNLDMDIKYKTFMDEWESDPRVKCVLVEG 63

Query: 120 SGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGF 179
           S PRAFCAGMDIKGVVAEIQKD+NTP+V KVFTAEYSLICKISEYKKPY+SLMDGVTMGF
Sbjct: 64  SSPRAFCAGMDIKGVVAEIQKDKNTPVVQKVFTAEYSLICKISEYKKPYVSLMDGVTMGF 123

Query: 180 GIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRIST 239
           GIG+SGHGRYRIVTE+T+LAMPENGIGLFPDVGFSYIAAK PG GSVG YL +TGKRIST
Sbjct: 124 GIGLSGHGRYRIVTERTVLAMPENGIGLFPDVGFSYIAAKSPGEGSVGNYLALTGKRIST 183

Query: 240 PSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLL 299
           PSDALF GLG+ YVPSGNL  LKEALL +TFS DPHQDI +LLA+Y  DPE E+ LK LL
Sbjct: 184 PSDALFVGLGSHYVPSGNLVQLKEALLQITFSNDPHQDINSLLAEYGHDPESESQLKSLL 243

Query: 300 PQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKV 359
           P+I S F   KSV +IIE LK HQ SA+  V +WA++ALQG+GKGAPFSLCLTQKYFS+V
Sbjct: 244 PRIISTFGPNKSVEEIIEMLKSHQMSADPKVVEWANDALQGIGKGAPFSLCLTQKYFSRV 303

Query: 360 ASAHGKTDNELS----------------------------------KNPKWNPASLEEVN 385
           A A GK  NELS                                  + PKWNP+SLEEV+
Sbjct: 304 AFAFGKISNELSTLSGVMKTEYRIALRSSLRNDFAEGVRAVLVDKDQKPKWNPSSLEEVD 363

Query: 386 QSEVEALFEPLGTGVE 401
           QSE+E+LF+PL    E
Sbjct: 364 QSEIESLFKPLSPEAE 379

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524057|ref|XP_003530649.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial-like [Glycine max]

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 274/398 (68%), Positives = 312/398 (78%), Gaps = 38/398 (9%)

Query: 42  LSFCNPQTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKS 101
           L+F   Q S + R F+ MA    EEFVKG+VH NGVAVITLDRPKALNAMNLDMD+KYKS
Sbjct: 15  LTFSRFQPSFSLRAFSAMA----EEFVKGSVHQNGVAVITLDRPKALNAMNLDMDVKYKS 70

Query: 102 FLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKI 161
           +LDEWESDPRVKCVL++ S PRAFCAGMDIKGVVAEIQKD+NTPLV KVFTAEYSLICKI
Sbjct: 71  YLDEWESDPRVKCVLVDSSSPRAFCAGMDIKGVVAEIQKDKNTPLVQKVFTAEYSLICKI 130

Query: 162 SEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGP 221
           S+YKKPYIS MDG+TMGFGIG+SGHGRYRI+TE+T+LAMPENGIGLFPDVGF+YIAA+ P
Sbjct: 131 SDYKKPYISFMDGITMGFGIGLSGHGRYRIITERTVLAMPENGIGLFPDVGFAYIAAQSP 190

Query: 222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVAL 281
           G GSVGAYLG+TGKRISTPSDA++AGLGT YVPSG LGS K+ALLA  FS+DPHQDI  L
Sbjct: 191 GEGSVGAYLGLTGKRISTPSDAIYAGLGTHYVPSGKLGSFKDALLATNFSQDPHQDIKVL 250

Query: 282 LAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGM 341
           LA+Y S+PE EA LKLLLPQ+ S F   KSV +IIEELKKHQSS + +V +WA+EALQG+
Sbjct: 251 LARYESNPESEAQLKLLLPQLVSTFGGNKSVTEIIEELKKHQSSTDPNVVEWANEALQGL 310

Query: 342 GKGAPFSLCLTQKYFSKVASAHGKTDNELS------------------------------ 371
            KGAPFSL LT KYFS VASA G  D  LS                              
Sbjct: 311 RKGAPFSLFLTNKYFSSVASAVGNNDGGLSTLSGVMETEYRIALRSSLRHDFSEGVRAVL 370

Query: 372 ----KNPKWNPASLEEVNQSEVEALFEPLGTGVEELKV 405
               +NPKW P+SLEE++ SEVEA+F+PLG  V EL+V
Sbjct: 371 VDKDQNPKWKPSSLEEIDPSEVEAVFKPLGPEVGELRV 408

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790718|ref|XP_002863244.1| hypothetical protein ARALYDRAFT_332986 [Arabidopsis lyrata subsp. lyrata] gi|297309078|gb|EFH39503.1| hypothetical protein ARALYDRAFT_332986 [Arabidopsis lyrata subsp. lyrata]

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 273/401 (68%), Positives = 314/401 (78%), Gaps = 38/401 (9%)

Query: 43  SFCNPQTS----GNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIK 98
           +F + QT      + R F+ MA AG ++FVKGNV PNGVA+ITLDR KALNAMNLDMDIK
Sbjct: 18  TFSSHQTRRFSISDRRKFSAMAGAGVDDFVKGNVFPNGVALITLDRTKALNAMNLDMDIK 77

Query: 99  YKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLI 158
           YKSFLDEWESDPRVKCV++EGS PRAFCAGMDIKGV AEIQKD+NTPLV KVFTAEY+LI
Sbjct: 78  YKSFLDEWESDPRVKCVIVEGSTPRAFCAGMDIKGVAAEIQKDKNTPLVQKVFTAEYTLI 137

Query: 159 CKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAA 218
           C I+ YKKPYISLMDG+TMGFG+G+SGHGRYR++TE+T+LAMPENGIGLFPDVGFSYIAA
Sbjct: 138 CAIAGYKKPYISLMDGITMGFGLGLSGHGRYRVITERTVLAMPENGIGLFPDVGFSYIAA 197

Query: 219 KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDI 278
             PGGGSVGAYLG+TGKRISTPSDALF GLGT YVPS  + SLKEA+L+   S DP+QDI
Sbjct: 198 HSPGGGSVGAYLGLTGKRISTPSDALFVGLGTHYVPSEKIASLKEAILSANLSGDPNQDI 257

Query: 279 VALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEAL 338
            A L+KYS + E EA LK LLPQI S FSS KSV++ IEELKK+Q S E SV +WA+EAL
Sbjct: 258 QATLSKYSGNLESEAHLKSLLPQIESAFSSNKSVKETIEELKKYQRSTEPSVVEWANEAL 317

Query: 339 QGMGKGAPFSLCLTQKYFSKVASAHGKTDNELS--------------------------- 371
           +G+ KGAPFSL LTQKYFS VASA GKT+NEL+                           
Sbjct: 318 KGLEKGAPFSLYLTQKYFSNVASAKGKTENELATLNGVMKTEYRIALRSALRGDFAEGVR 377

Query: 372 -------KNPKWNPASLEEVNQSEVEALFEPLGTGVEELKV 405
                  +NPKWNPAS+EEV+++EVEALF+PL   VEELKV
Sbjct: 378 AVLIDKDQNPKWNPASIEEVDENEVEALFKPLSQEVEELKV 418

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79473201|ref|NP_193072.2| 3-hydroxyisobutyryl-CoA hydrolase-like protein 3 [Arabidopsis thaliana] gi|334302821|sp|Q9T0K7.2|HIBC6_ARATH RecName: Full=3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial; Flags: Precursor gi|332657870|gb|AEE83270.1| 3-hydroxyisobutyryl-CoA hydrolase-like protein 3 [Arabidopsis thaliana]

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 275/427 (64%), Positives = 320/427 (74%), Gaps = 43/427 (10%)

Query: 13  IFTKSSTLLFNQTTITRSQRHQSTCRFIRLSFCNPQTSGNSRTFATMAAAGAEEFVKGNV 72
           I T S  + F + + T S +   T RF         +  + R F+ MA AG ++FVKGNV
Sbjct: 4   IKTLSHRIFFPKFSQTFSSQFHQTLRF---------SISDRRKFSAMAGAGVDDFVKGNV 54

Query: 73  HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
            PNGVA+ITLDR KALNAMNLDMDIKYKSFLDEWESDPRVKCV++EGS  RAFCAGMDIK
Sbjct: 55  FPNGVALITLDRTKALNAMNLDMDIKYKSFLDEWESDPRVKCVIVEGSTSRAFCAGMDIK 114

Query: 133 GVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
           GV AEIQKD+NTPLV KVFTAEY+LIC I+ YKKPYISLMDG+TMGFG+G+SGHGRYR++
Sbjct: 115 GVAAEIQKDKNTPLVQKVFTAEYTLICAIAAYKKPYISLMDGITMGFGLGLSGHGRYRVI 174

Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
           TE+T+LAMPENGIGLFPDVGFSYIAA  PGGGSVGAYLG+TGKRIS PSDALF GLGT Y
Sbjct: 175 TERTVLAMPENGIGLFPDVGFSYIAAHSPGGGSVGAYLGLTGKRISAPSDALFVGLGTHY 234

Query: 253 VPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSV 312
           VPS  L SLKEA+L+   SEDP+QDI A L+KYSS+PE EA LK LLP I S FSS KS+
Sbjct: 235 VPSEKLASLKEAILSANLSEDPNQDIQATLSKYSSNPESEAHLKSLLPHIESAFSSNKSI 294

Query: 313 RQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELS- 371
           ++ IEELKK+Q S E+SV +WA+EAL+G+ KGAPFSL LTQKYFS VA A  K +NEL+ 
Sbjct: 295 KETIEELKKYQQSTESSVVEWANEALKGLEKGAPFSLYLTQKYFSNVACAKSKPENELAT 354

Query: 372 ---------------------------------KNPKWNPASLEEVNQSEVEALFEPLGT 398
                                            +NPKWNP S+EEV+++EVEALF+PL  
Sbjct: 355 LNGVMKTEYRIALRSALRGDFAEGVRAVLIDKDQNPKWNPTSIEEVDENEVEALFKPLSP 414

Query: 399 GVEELKV 405
            VEELKV
Sbjct: 415 EVEELKV 421

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738862|emb|CBI28107.3| unnamed protein product [Vitis vinifera]

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 278/407 (68%), Positives = 306/407 (75%), Gaps = 60/407 (14%)

Query: 59  MAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIE 118
           MAAA AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDI+YK FLDEWE DP VKCVL+E
Sbjct: 1   MAAAAAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIRYKKFLDEWEMDPMVKCVLVE 60

Query: 119 GSGPRAFCAGMDIKGVVAEIQKDRNTPLVPK--------------------------VFT 152
           GS  RAF AGMDIKGVVAEIQKD+ TPLV K                          VFT
Sbjct: 61  GSSSRAFSAGMDIKGVVAEIQKDKTTPLVQKCHFHFYIPCGDVKQISARKQLSYVIEVFT 120

Query: 153 AEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVG 212
           AEYSLICKISEYKKPYISLMDG+TMGFGIG+SGHGRYRIVTE+TLLAMPENGIGLFPDVG
Sbjct: 121 AEYSLICKISEYKKPYISLMDGITMGFGIGLSGHGRYRIVTERTLLAMPENGIGLFPDVG 180

Query: 213 FSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSE 272
           F+YIAA+ PG GSVGAYLGMTGKRIST +DAL+ GLGT YVPSGNL SLKEALL  +FSE
Sbjct: 181 FAYIAAQSPGEGSVGAYLGMTGKRISTSADALYVGLGTHYVPSGNLSSLKEALLTTSFSE 240

Query: 273 DPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQ 332
           DPHQDI  LL KYS DPE EA LKLLLPQI S FS++KSV +IIEELKKHQ S +  V++
Sbjct: 241 DPHQDIRELLVKYSHDPESEAQLKLLLPQIVSTFSADKSVNEIIEELKKHQLSTDAIVSE 300

Query: 333 WADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNEL---------------------- 370
           WA EAL G+GKGAPFSLCLTQK+FS+VA A GK D++L                      
Sbjct: 301 WAKEALLGLGKGAPFSLCLTQKHFSRVALARGKNDSDLCSLSGVMKTEYRIALRSSLRND 360

Query: 371 ------------SKNPKWNPASLEEVNQSEVEALFEPLGTGVEELKV 405
                        + PKWNP+SLEEV+ +EVEA+FEPL  G EEL+V
Sbjct: 361 FAEGVRAVLVDKDQKPKWNPSSLEEVDLNEVEAVFEPLSQGTEELRV 407

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549046|ref|XP_002515579.1| 3-hydroxybutyryl-CoA dehydratase, putative [Ricinus communis] gi|223545523|gb|EEF47028.1| 3-hydroxybutyryl-CoA dehydratase, putative [Ricinus communis]

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 277/439 (63%), Positives = 329/439 (74%), Gaps = 57/439 (12%)

Query: 1   MRSLSLSLSVSQIFTKSSTLLFNQTTITRSQRHQSTCRFIRLSFCNPQTSGNSRTFATMA 60
           MRSL   +S S++ +KS+ L     +    ++   +CR                TFA MA
Sbjct: 1   MRSL---VSASRLVSKSAILFTESASSFSFRKSYLSCR----------------TFAIMA 41

Query: 61  AAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS 120
           +A ++ FVKGNVH NGVAVITLDRPKALNAMNLDMD+KYKSFLDEWESDPRVKCVL+EGS
Sbjct: 42  SASSDNFVKGNVHQNGVAVITLDRPKALNAMNLDMDVKYKSFLDEWESDPRVKCVLVEGS 101

Query: 121 GPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFG 180
            PRAFCAG D+K + ++ Q       + +VFTAEYSLICKIS+YKKPYIS MDG+TMGFG
Sbjct: 102 SPRAFCAGGDVKAITSKNQLSH----MIEVFTAEYSLICKISDYKKPYISFMDGITMGFG 157

Query: 181 IGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTP 240
           +G+SGHGRYR+VTE+T+LAMPENGIGLFPDVGFSYIAA  PG GSVGAYLG+TGKRISTP
Sbjct: 158 LGLSGHGRYRVVTERTVLAMPENGIGLFPDVGFSYIAAHSPGEGSVGAYLGLTGKRISTP 217

Query: 241 SDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLP 300
           SDALF GLGT +VPSGNLGS+KEAL ++TFS+DP+ DI ALLAKYS++PE EA LKLLLP
Sbjct: 218 SDALFVGLGTHFVPSGNLGSVKEALFSMTFSQDPNDDIKALLAKYSNEPESEAELKLLLP 277

Query: 301 QITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA 360
           QI S FS+  SV++I EELKKHQ SA+T VA+WA +ALQG+GKGAPFSLCLTQKYFSKVA
Sbjct: 278 QIISTFSASNSVKEITEELKKHQQSADTKVAEWASDALQGLGKGAPFSLCLTQKYFSKVA 337

Query: 361 SAHGKTDNELS----------------------------------KNPKWNPASLEEVNQ 386
           SA+GK ++ELS                                  + PKWNP SLE+++Q
Sbjct: 338 SAYGKPNSELSTLNGVMKTEYRIALRSSLRNDFAEGVRAVLVDKDQKPKWNPPSLEDIDQ 397

Query: 387 SEVEALFEPLGTGVEELKV 405
           +EVE+LFEPL   VEELKV
Sbjct: 398 NEVESLFEPLSPEVEELKV 416

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
TAIR|locus:2142050	421	AT4G13360 [Arabidopsis thalian	0.864	0.831	0.699	6.2e-142
TAIR|locus:2087218	418	AT3G24360 [Arabidopsis thalian	0.782	0.758	0.742	2.2e-135
UNIPROTKB|Q5ZJ60	385	HIBCH "3-hydroxyisobutyryl-CoA	0.787	0.828	0.362	1.3e-45
UNIPROTKB|F1P188	385	HIBCH "3-hydroxyisobutyryl-CoA	0.787	0.828	0.362	2.1e-45
UNIPROTKB|Q6NVY1	386	HIBCH "3-hydroxyisobutyryl-CoA	0.765	0.803	0.354	2.4e-44
MGI|MGI:1923792	385	Hibch "3-hydroxyisobutyryl-Coe	0.767	0.807	0.346	3.9e-44
WB|WBGene00017301	386	F09F7.4 [Caenorhabditis elegan	0.824	0.865	0.348	1.7e-43
FB|FBgn0038326	386	CG5044 [Drosophila melanogaste	0.748	0.784	0.358	2.2e-43
TIGR_CMR|CBU_1856	379	CBU_1856 "enoyl-CoA hydratase/	0.651	0.696	0.395	2.2e-43
RGD|1308392	385	Hibch "3-hydroxyisobutyryl-CoA	0.767	0.807	0.355	2.2e-43

TAIR|locus:2142050 AT4G13360 [Arabidopsis thaliana (taxid:3702)]

 Score = 1278 (454.9 bits), Expect = 6.2e-142, Sum P(2) = 6.2e-142
 Identities = 251/359 (69%), Positives = 290/359 (80%)

Query:    13 IFTKSSTLLFNQTTITRSQRHQSTCRFIRLSFCNPQTSGNSRTFATMAAAGAEEFVKGNV 72
             I T S  + F + + T S +   T RF         +  + R F+ MA AG ++FVKGNV
Sbjct:     4 IKTLSHRIFFPKFSQTFSSQFHQTLRF---------SISDRRKFSAMAGAGVDDFVKGNV 54

Query:    73 HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
              PNGVA+ITLDR KALNAMNLDMDIKYKSFLDEWESDPRVKCV++EGS  RAFCAGMDIK
Sbjct:    55 FPNGVALITLDRTKALNAMNLDMDIKYKSFLDEWESDPRVKCVIVEGSTSRAFCAGMDIK 114

Query:   133 GVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
             GV AEIQKD+NTPLV KVFTAEY+LIC I+ YKKPYISLMDG+TMGFG+G+SGHGRYR++
Sbjct:   115 GVAAEIQKDKNTPLVQKVFTAEYTLICAIAAYKKPYISLMDGITMGFGLGLSGHGRYRVI 174

Query:   193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
             TE+T+LAMPENGIGLFPDVGFSYIAA  PGGGSVGAYLG+TGKRIS PSDALF GLGT Y
Sbjct:   175 TERTVLAMPENGIGLFPDVGFSYIAAHSPGGGSVGAYLGLTGKRISAPSDALFVGLGTHY 234

Query:   253 VPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSV 312
             VPS  L SLKEA+L+   SEDP+QDI A L+KYSS+PE EA LK LLP I S FSS KS+
Sbjct:   235 VPSEKLASLKEAILSANLSEDPNQDIQATLSKYSSNPESEAHLKSLLPHIESAFSSNKSI 294

Query:   313 RQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELS 371
             ++ IEELKK+Q S E+SV +WA+EAL+G+ KGAPFSL LTQKYFS VA A  K +NEL+
Sbjct:   295 KETIEELKKYQQSTESSVVEWANEALKGLEKGAPFSLYLTQKYFSNVACAKSKPENELA 353

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2087218 AT3G24360 [Arabidopsis thaliana (taxid:3702)]

 Score = 1233 (439.1 bits), Expect = 2.2e-135, Sum P(2) = 2.2e-135
 Identities = 236/318 (74%), Positives = 275/318 (86%)

Query:    54 RTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVK 113
             R F+ MA+ G++EFVKGNV+PNGVA+ITLDRPKALNAMNL+MD+KYKS LDEWE DP VK
Sbjct:    34 RKFSVMAS-GSDEFVKGNVYPNGVALITLDRPKALNAMNLEMDLKYKSLLDEWEYDPGVK 92

Query:   114 CVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMD 173
             CV++EGS  RAFCAGMDIKGVVAEI  D+NT LV KVFTAEYSLICKI+ Y+KPYISLMD
Sbjct:    93 CVVVEGSTSRAFCAGMDIKGVVAEILMDKNTSLVQKVFTAEYSLICKIAGYRKPYISLMD 152

Query:   174 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMT 233
             G+TMGFG+G+SGHGRYR++TE+T+LAMPENGIGLFPDVGFSYIAA  PG GSVGAYLGMT
Sbjct:   153 GITMGFGLGLSGHGRYRVITERTVLAMPENGIGLFPDVGFSYIAAHSPGEGSVGAYLGMT 212

Query:   234 GKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEA 293
             G+RISTPSDALF GLGT YVPSG LGSL+EA+L+   S+DP Q I A L+ YSSDPE E+
Sbjct:   213 GRRISTPSDALFVGLGTHYVPSGKLGSLREAILSADLSKDPQQHIQATLSNYSSDPETES 272

Query:   294 PLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQ 353
              L++LLPQI S FS  KSV++ IEELKK Q S+E SVA+WA+EA+QG+ KGAPFSL LT 
Sbjct:   273 HLQMLLPQIESAFSVSKSVKETIEELKKFQQSSEASVAEWANEAVQGIEKGAPFSLYLTH 332

Query:   354 KYFSKVASAHGKTDNELS 371
             KYFSKVA A GKT+N ++
Sbjct:   333 KYFSKVACAKGKTNNAMA 350

GO:0003824 "catalytic activity" evidence=IEA

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IDA

UNIPROTKB|Q5ZJ60 HIBCH "3-hydroxyisobutyryl-CoA hydrolase, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 128/353 (36%), Positives = 193/353 (54%)

Query:    76 GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
             G  +ITL+RPK LNA++  M  +    +  WE DP    ++I+G+G +AFCAG D++ + 
Sbjct:    44 GAGIITLNRPKVLNALSFKMIQQIYPQIKAWEQDPETFLIIIKGTGEKAFCAGGDVRAI- 102

Query:   136 AEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK 195
             A+  K  +T +    F  EY L   I   KKPY++L+DG+TMG G+G+S HG +R+ TEK
Sbjct:   103 ADAGKAGDT-MTRDYFREEYRLDNAIGTCKKPYVALIDGITMGGGVGLSVHGHFRVATEK 161

Query:   196 TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS 255
             T+ AMPE  IGLFPDVG  Y   +    G +G  L +TG R+    D L AG+ T +V S
Sbjct:   162 TVFAMPETAIGLFPDVGGGYFLPRL--SGKIGHLLALTGFRLKG-RDVLKAGIATHFVES 218

Query:   256 GNLGSLKEALLAVTFSEDPHQDIVA-LLAKYSS----DPEGEAPLKLLLPQITSCFSSEK 310
             G L  L++ L+A+   + P ++ +A LL  Y      D E E  L   + +I S FS+  
Sbjct:   219 GKLPELEKDLIAL---KSPSKENIADLLNSYHMQTKIDQEKEFVLDEHMERINSIFSAN- 274

Query:   311 SVRQIIEELKKHQSSAETSVAQWADE--------ALQGMGKGAPFSL--CLTQKYFSKVA 360
             S+ +I+++LK+  S   T   +  ++         L+ + +GA  SL    T +Y    A
Sbjct:   275 SMEEIVQKLKQDGSPFATKQLEAINKMSPTSLKLTLRQLREGATMSLQDVFTMEYRLSQA 334

Query:   361 SAHGKTDNE------LSKN--PKWNPASLEEVNQSEVEALFEPLGTGVEELKV 405
                G    E      + K+  P+W PA+LEEV+   V+  F+PLG    +LK+
Sbjct:   335 CMRGHDFYEGVRAVLIDKDQSPRWKPAALEEVSDEFVDNCFKPLGNN--DLKL 385

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=IEA

GO:0006574 "valine catabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1P188 HIBCH "3-hydroxyisobutyryl-CoA hydrolase, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 128/353 (36%), Positives = 192/353 (54%)

Query:    76 GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
             G  +ITL+RPK LNA++  M  +    +  WE DP    ++I+G+G +AFCAG D++ + 
Sbjct:    44 GAGIITLNRPKVLNALSFKMIQQIYPQIKAWEQDPETFLIIIKGTGEKAFCAGGDVRAI- 102

Query:   136 AEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK 195
             A+  K  +T +    F  EY L   I   KKPY++L+DG+TMG G+G+S HG +R+ TEK
Sbjct:   103 ADAGKAGDT-MTRDYFREEYRLDNAIGTCKKPYVALIDGITMGGGVGLSVHGHFRVATEK 161

Query:   196 TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS 255
             T+ AMPE  IGLFPDVG  Y   +    G +G  L +TG R+    D L AG+ T +V S
Sbjct:   162 TVFAMPETAIGLFPDVGGGYFLPRL--SGKIGHLLALTGFRLKG-RDVLKAGIATHFVES 218

Query:   256 GNLGSLKEALLAVTFSEDPHQDIVA-LLAKYSS----DPEGEAPLKLLLPQITSCFSSEK 310
             G L  L++ L+A+   + P ++ +A LL  Y      D E E  L   + +I S FS+  
Sbjct:   219 GKLPELEKDLIAL---KSPSKENIADLLNSYHMQTKIDQEKEFVLDEHMERINSIFSAN- 274

Query:   311 SVRQIIEELKKHQSSAETSVAQWADE--------ALQGMGKGAPFSL--CLTQKYFSKVA 360
             S+ +I+ +LK+  S   T   +  ++         L+ + +GA  SL    T +Y    A
Sbjct:   275 SMEEIVHKLKQDGSPFATKQLEAINKMSPTSLKLTLRQLREGATMSLQDVFTMEYRLSQA 334

Query:   361 SAHGKTDNE------LSKN--PKWNPASLEEVNQSEVEALFEPLGTGVEELKV 405
                G    E      + K+  P+W PA+LEEV+   V+  F+PLG    +LK+
Sbjct:   335 CMRGHDFYEGVRAVLIDKDQSPRWKPATLEEVSDEFVDNCFKPLGNN--DLKL 385

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q6NVY1 HIBCH "3-hydroxyisobutyryl-CoA hydrolase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 122/344 (35%), Positives = 188/344 (54%)

Query:    79 VITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEI 138
             VITL+RPK LNA+ L+M  +    L +WE DP    ++I+G+G +AFCAG DI+ V++E 
Sbjct:    48 VITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIR-VISEA 106

Query:   139 QKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL 198
             +K +   + P  F  EY L   +   +KPY++L+ G+TMG G+G+S HG++R+ TEK L 
Sbjct:   107 EKAKQK-IAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLF 165

Query:   199 AMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNL 258
             AMPE  IGLFPDVG  Y   +  G   +G +L +TG R+    D   AG+ T +V S  L
Sbjct:   166 AMPETAIGLFPDVGGGYFLPRLQG--KLGYFLALTGFRLKG-RDVYRAGIATHFVDSEKL 222

Query:   259 GSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQ----ITSCFSSEKSVRQ 314
               L+E LLA+       ++I ++L  Y ++ + +     +L +    I SCFS+  +V +
Sbjct:   223 AMLEEDLLAL--KSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSCFSAN-TVEE 279

Query:   315 IIEELKKHQSS------------AETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA 362
             IIE L++  SS            + TS+     + ++G  K       LT +Y    A  
Sbjct:   280 IIENLQQDGSSFALEQLKVINKMSPTSLKITLRQLMEGSSK--TLQEVLTMEYRLSQACM 337

Query:   363 HGKTDNE------LSKN--PKWNPASLEEVNQSEVEALFEPLGT 398
              G   +E      + K+  PKW PA L+EV + ++   F+ LG+
Sbjct:   338 RGHDFHEGVRAVLIDKDQSPKWKPADLKEVTEEDLNNHFKSLGS 381

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=IEA

GO:0006574 "valine catabolic process" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0009083 "branched-chain amino acid catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

MGI|MGI:1923792 Hibch "3-hydroxyisobutyryl-Coenzyme A hydrolase" [Mus musculus (taxid:10090)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 119/343 (34%), Positives = 188/343 (54%)

Query:    79 VITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEI 138
             VITL+RPK LNA++L+M  +    L  WE DP    ++I+G+G +AFCAG DIK + +E 
Sbjct:    47 VITLNRPKFLNALSLNMIRQIYPQLKTWEQDPDTFLIIIKGAGGKAFCAGGDIKAL-SEA 105

Query:   139 QKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL 198
             +K R   L   +F  EY L   I+  +KPY++L+DG+TMG G+G+S HG++R+ TE++L 
Sbjct:   106 KKARQN-LTQDLFREEYILNNAIASCQKPYVALIDGITMGGGVGLSVHGQFRVATERSLF 164

Query:   199 AMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNL 258
             AMPE GIGLFPDVG  Y   +  G   +G +L +TG R+    D   AG+ T +V S  L
Sbjct:   165 AMPETGIGLFPDVGGGYFLPRLQG--KLGYFLALTGYRLKG-RDVHRAGIATHFVDSEKL 221

Query:   259 GSLKEALLAVTFSEDPH-QDIVALLAKYSSDPEGEAPLKLL----LPQITSCFSSEKSVR 313
               L+E LLA+   + P  +D+  +L  Y +  + +    ++    + +I SCFS+  +V 
Sbjct:   222 RVLEEELLAL---KSPSAEDVAGVLESYHAKSKMDQDKSIIFEEHMDKINSCFSAN-TVE 277

Query:   314 QIIEELKKHQSS------------AETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVAS 361
             QIIE L++  S             + TS+     + ++G  K     L +  +       
Sbjct:   278 QIIENLRQDGSPFAIEQMKVINKMSPTSLKITLRQLMEGSSKTLQEVLIMEYRITQACME 337

Query:   362 AHGKTDN------ELSKNPKWNPASLEEVNQSEVEALFEPLGT 398
              H   +       +  + PKW PA+L++V   ++ + F+ LG+
Sbjct:   338 GHDFHEGVRAVLIDKDQTPKWKPANLKDVTDEDLNSYFKSLGS 380

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009083 "branched-chain amino acid catabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

WB|WBGene00017301 F09F7.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 132/379 (34%), Positives = 192/379 (50%)

Query:    55 TFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKC 114
             +F+  AAA +E  V  + H     V+TL+RPKALNA+NL+M  ++   L  W S   V  
Sbjct:    25 SFSVSAAAKSEILV--DTH-GSKKVVTLNRPKALNALNLEMVREFYPKLQAWNSSSDVDL 81

Query:   115 VLIEGSGPRAFCAGMDIKGVVAEI---QKDRNTPLVPKVFTAEYSLICKISEYKKPYISL 171
             V+++GSG +AFCAG D+  VV      +  +   +    F  EY L   I    K Y+ L
Sbjct:    82 VILKGSGDKAFCAGGDVLAVVRSFKDSESGKECTMHKDFFREEYILNHLIGTLNKQYVCL 141

Query:   172 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLG 231
             +DG+ MG G G+S +GR+R+ TEKT+LAMPE  +GLFPDVG SY  ++  G  ++G YL 
Sbjct:   142 IDGIVMGGGCGLSVNGRFRVATEKTMLAMPETALGLFPDVGGSYFLSRLKG--NLGMYLA 199

Query:   232 MTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEG 291
             +TG R+   +DA  AGL T +V S  L  L++ L  V   +     +  ++  +      
Sbjct:   200 LTGYRL-LGADAFHAGLATHFVESSELAKLEKEL--VNIKDVTENSVDEVIRSFEPKKIP 256

Query:   292 EAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCL 351
             E  L   L QI   F + KSV +I+  L+K  S        WA +    +GK +P SL +
Sbjct:   257 EFSLSKNLAQIRDSFKA-KSVEEILASLEKDGSD-------WAKKQAATLGKMSPTSLKV 308

Query:   352 TQKYF---SKVASAHGKT-----------DNEL-----------SKNPKWNPASLEEVNQ 386
             T +     SK++ A   T           D +             + PKWNPA+L +V  
Sbjct:   309 THRQITEGSKMSYAKIFTMEYRLTQRFLADKDFHEGCRAILVDKDRKPKWNPATLADVKD 368

Query:   387 SEVEALFEPLGTGVEELKV 405
             S V+  F PL     +LK+
Sbjct:   369 SVVDNYFSPLPNN-SDLKL 386

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

FB|FBgn0038326 CG5044 [Drosophila melanogaster (taxid:7227)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 127/354 (35%), Positives = 190/354 (53%)

Query:    79 VITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEI 138
             +I L+RPKALNA+NL+M  K    L + E    +  V+I+G+G +AFCAG D++ +V   
Sbjct:    57 MIILNRPKALNAINLEMVRKIYKHLKKCEKSKSL--VIIKGTGDKAFCAGGDVRALVEAG 114

Query:   139 QKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL 198
               D +       F  EYS    I  YK PYI+++DG+TMG G+G+S HG+YR+ +++TL 
Sbjct:   115 PTDESKSF----FREEYSTNALIGNYKIPYIAIIDGITMGGGVGLSVHGKYRVASDRTLF 170

Query:   199 AMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNL 258
             AMPE  IGLFPDVG SY   +  G   +G YLG+TG R+   +D  ++G+ T Y  S  +
Sbjct:   171 AMPETAIGLFPDVGGSYFLPRLQG--KLGLYLGLTGYRLRG-ADVYYSGIATHYCESSKI 227

Query:   259 GSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEE 318
               L+ ALL    ++D    +  LL KY S PE    L+ +L QI   FS++ SV  I+E 
Sbjct:   228 PDLETALLNCPDADD----VPELLQKYHSPPEKPFSLQPVLEQINKNFSAD-SVEGILEN 282

Query:   319 LKKHQSSAETSVAQWADEALQGMGKGAPFSL-----------------CLTQKYFSKVAS 361
             L+   S       +WA + L+ + K +P S+                 CL  +Y  ++A 
Sbjct:   283 LQNDGS-------EWAKKTLETLSKMSPTSMKVTFRQLELGSQLSLAQCLIMEY--RLAV 333

Query:   362 AH-GKTDNE-------LSKN--PKWNPASLEEVNQSEVEALFEPLGTGVEELKV 405
              H  ++D +       + K+  P+W P  L +V +  V+  F  L    EELK+
Sbjct:   334 RHLERSDFKEGVRALLIDKDQKPQWQPTKLADVTEEHVQWFFRKL-PDTEELKL 386

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

TIGR_CMR|CBU_1856 CBU_1856 "enoyl-CoA hydratase/isomerase family protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 113/286 (39%), Positives = 165/286 (57%)

Query:    80 ITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQ 139
             ITL+RPKALNA+  DM  +    L  WESD  +K V+I+G+G RAFCAG DI+ +    +
Sbjct:    45 ITLNRPKALNALTGDMCRRLHEQLLGWESDRTIKAVVIKGAGDRAFCAGGDIRTLYMNGK 104

Query:   140 KDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLA 199
             +   T    K F  EY +   I  +KKPYI+L+DG+TMG G G+S HG +R+ TE+ L A
Sbjct:   105 EHLQT--AQKFFYDEYRMNAAIFHFKKPYIALLDGITMGGGAGVSVHGSHRVATEQLLFA 162

Query:   200 MPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLG 259
             MPE  IG FPDVG  Y  ++     ++G YLG+TG RI    DA + GL    +PS    
Sbjct:   163 MPETAIGFFPDVGAGYFLSRCKN--NMGYYLGLTGDRIGA-GDAKWLGLVNHVIPSEKQD 219

Query:   260 SLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQ---ITSCFSSEKSVRQII 316
             +L EAL +  FS + H+ +  ++ ++S + E   PL  L  Q   I SCF++E SV  I+
Sbjct:   220 ALIEALASAPFSSEDHRQVTDIITEFSIELE---PL--LFNQKTLIESCFAAE-SVEAIV 273

Query:   317 EELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASA 362
               L++          +W+   L+ +   +P SL +T ++ ++ ASA
Sbjct:   274 SRLEERNE-------EWSKTVLETLLSKSPTSLKVTYEHLTR-ASA 311

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

GO:0016853 "isomerase activity" evidence=ISS

RGD|1308392 Hibch "3-hydroxyisobutyryl-CoA hydrolase" [Rattus norvegicus (taxid:10116)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 122/343 (35%), Positives = 193/343 (56%)

Query:    79 VITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEI 138
             VITL+RPK LNA++L+M  +    L +WE DP    ++I+G+G +AFCAG DIK + +E 
Sbjct:    47 VITLNRPKLLNALSLNMIRQIYPQLKKWERDPDTFLIIIKGAGGKAFCAGGDIKAL-SEA 105

Query:   139 QKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL 198
             +K   T L   +F  EY L   I+  +KPY++L+DG+TMG G+G+S HG++R+ TE++L 
Sbjct:   106 KKAGQT-LSQDLFREEYILNNAIASCQKPYVALIDGITMGGGVGLSVHGQFRVATERSLF 164

Query:   199 AMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNL 258
             AMPE GIGLFPDVG  Y   +  G   +G +L +TG R+    D   AG+ T +V S  L
Sbjct:   165 AMPETGIGLFPDVGGGYFLPRLQG--KLGYFLALTGFRLKG-RDVHRAGIATHFVDSEKL 221

Query:   259 GSLKEALLAVTFSEDPH-QDIVALLAKYSSDPEGEAPLKLL----LPQITSCFSSEKSVR 313
               L+E LLA+   + P  +D+  +L  Y +  +      ++    + +I SCFS+  +V 
Sbjct:   222 HVLEEELLAL---KSPSAEDVAGVLESYHAKSKMGQDKSIIFEEHMDKINSCFSAN-TVE 277

Query:   314 QIIEELKKHQSSAETSVAQWADE--------ALQGMGKGAPFSL--CLTQKYFSKVASAH 363
             QI+E L++  S       +  ++         L+ + +G+  +L   LT +Y    A   
Sbjct:   278 QILENLRQDGSPFAMEQIKVINKMSPTSLKITLRQLMEGSTKTLQEVLTMEYRLTQACME 337

Query:   364 GKTDNE------LSKN--PKWNPASLEEVNQSEVEALFEPLGT 398
             G   +E      + K+  PKW PA L++V   ++ + F+ LG+
Sbjct:   338 GHDFHEGVRAVLIDKDQTPKWKPADLKDVTDEDLNSYFKSLGS 380

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006574 "valine catabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q58EB4	HIBCH_DANRE	3, ., 1, ., 2, ., 4	0.3435	0.8567	0.9083	yes	no
Q9T0K7	HIBC6_ARATH	3, ., 1, ., 2, ., -	0.6440	0.9481	0.9121	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.2	0.766
3rd Layer	3.1.2.4	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	405
PRK05617	342	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrol	1e-104
PLN02874	379	PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrol	6e-55
PLN02988	381	PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrol	1e-51
cd06558	195	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme	2e-44
PLN02851	407	PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrol	1e-42
PLN02157	401	PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrol	1e-39
COG1024	257	COG1024, CaiD, Enoyl-CoA hydratase/carnithine race	5e-37
PRK06072	248	PRK06072, PRK06072, enoyl-CoA hydratase; Provision	5e-25
PRK06688	259	PRK06688, PRK06688, enoyl-CoA hydratase; Provision	3e-22
pfam00378	245	pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami	2e-19
PRK05809	260	PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydrata	5e-17
PRK05980	260	PRK05980, PRK05980, enoyl-CoA hydratase; Provision	9e-17
PRK07657	260	PRK07657, PRK07657, enoyl-CoA hydratase; Provision	6e-16
PRK06494	259	PRK06494, PRK06494, enoyl-CoA hydratase; Provision	3e-15
PRK06190	258	PRK06190, PRK06190, enoyl-CoA hydratase; Provision	9e-15
PRK06127	269	PRK06127, PRK06127, enoyl-CoA hydratase; Provision	1e-14
PRK07659	260	PRK07659, PRK07659, enoyl-CoA hydratase; Provision	1e-13
pfam13766	117	pfam13766, ECH_C, 2-enoyl-CoA Hydratase C-terminal	2e-13
PRK06210	272	PRK06210, PRK06210, enoyl-CoA hydratase; Provision	4e-13
PLN02600	251	PLN02600, PLN02600, enoyl-CoA hydratase	4e-13
PRK08139	266	PRK08139, PRK08139, enoyl-CoA hydratase; Validated	8e-13
TIGR02441	737	TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c	2e-12
PRK08138	261	PRK08138, PRK08138, enoyl-CoA hydratase; Provision	3e-12
PLN02888	265	PLN02888, PLN02888, enoyl-CoA hydratase	8e-12
PRK06144	262	PRK06144, PRK06144, enoyl-CoA hydratase; Provision	1e-11
TIGR02280	256	TIGR02280, PaaB1, phenylacetate degradation probab	2e-11
PRK07658	257	PRK07658, PRK07658, enoyl-CoA hydratase; Provision	5e-11
PRK05981	266	PRK05981, PRK05981, enoyl-CoA hydratase; Provision	1e-10
PRK07509	262	PRK07509, PRK07509, enoyl-CoA hydratase; Provision	2e-10
PRK06495	257	PRK06495, PRK06495, enoyl-CoA hydratase; Provision	2e-10
PRK08260	296	PRK08260, PRK08260, enoyl-CoA hydratase; Provision	4e-10
PRK05870	249	PRK05870, PRK05870, enoyl-CoA hydratase; Provision	7e-10
PRK08252	254	PRK08252, PRK08252, enoyl-CoA hydratase; Provision	8e-10
PRK09674	255	PRK09674, PRK09674, enoyl-CoA hydratase-isomerase;	1e-09
PRK07327	268	PRK07327, PRK07327, enoyl-CoA hydratase; Provision	1e-09
PRK08140	262	PRK08140, PRK08140, enoyl-CoA hydratase; Provision	1e-09
PRK08272	302	PRK08272, PRK08272, enoyl-CoA hydratase; Provision	2e-09
PRK05995	262	PRK05995, PRK05995, enoyl-CoA hydratase; Provision	2e-09
PRK05862	257	PRK05862, PRK05862, enoyl-CoA hydratase; Provision	2e-09
PRK09120	275	PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydrata	2e-09
PRK07260	255	PRK07260, PRK07260, enoyl-CoA hydratase; Provision	6e-09
PRK05864	276	PRK05864, PRK05864, enoyl-CoA hydratase; Provision	2e-08
PLN02664	275	PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-d	3e-08
PRK09076	258	PRK09076, PRK09076, enoyl-CoA hydratase; Provision	4e-08
PRK06143	256	PRK06143, PRK06143, enoyl-CoA hydratase; Provision	4e-08
PRK07468	262	PRK07468, PRK07468, enoyl-CoA hydratase; Provision	5e-08
PRK05674	265	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydr	6e-08
PRK07938	249	PRK07938, PRK07938, enoyl-CoA hydratase; Provision	8e-08
TIGR02440	699	TIGR02440, FadJ, fatty oxidation complex, alpha su	9e-08
PRK07799	263	PRK07799, PRK07799, enoyl-CoA hydratase; Provision	9e-08
PRK06142	272	PRK06142, PRK06142, enoyl-CoA hydratase; Provision	1e-07
PRK08290	288	PRK08290, PRK08290, enoyl-CoA hydratase; Provision	3e-07
PRK11154	708	PRK11154, fadJ, multifunctional fatty acid oxidati	4e-07
PRK08150	255	PRK08150, PRK08150, enoyl-CoA hydratase; Provision	6e-07
PRK03580	261	PRK03580, PRK03580, carnitinyl-CoA dehydratase; Pr	6e-07
PRK06023	251	PRK06023, PRK06023, enoyl-CoA hydratase; Provision	7e-07
PRK07511	260	PRK07511, PRK07511, enoyl-CoA hydratase; Provision	2e-06
PRK12478	298	PRK12478, PRK12478, enoyl-CoA hydratase; Provision	2e-06
PRK07827	260	PRK07827, PRK07827, enoyl-CoA hydratase; Provision	2e-06
PRK08258	277	PRK08258, PRK08258, enoyl-CoA hydratase; Provision	6e-06
PRK07112	255	PRK07112, PRK07112, polyketide biosynthesis enoyl-	3e-05
PRK09245	266	PRK09245, PRK09245, enoyl-CoA hydratase; Provision	4e-05
PLN03214	278	PLN03214, PLN03214, probable enoyl-CoA hydratase/i	5e-05
TIGR01929	259	TIGR01929, menB, naphthoate synthase (dihydroxynap	6e-05
PRK07854	243	PRK07854, PRK07854, enoyl-CoA hydratase; Provision	7e-05
COG0447	282	COG0447, MenB, Dihydroxynaphthoic acid synthase [C	1e-04
PRK07396	273	PRK07396, PRK07396, dihydroxynaphthoic acid synthe	3e-04
PRK08321	302	PRK08321, PRK08321, naphthoate synthase; Validated	7e-04
PRK06213	229	PRK06213, PRK06213, enoyl-CoA hydratase; Provision	0.001
PRK06563	255	PRK06563, PRK06563, enoyl-CoA hydratase; Provision	0.001
TIGR02437	714	TIGR02437, FadB, fatty oxidation complex, alpha su	0.001
PLN02921	327	PLN02921, PLN02921, naphthoate synthase	0.002

>gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional

 Score =  310 bits (798), Expect = e-104
 Identities = 134/351 (38%), Positives = 188/351 (53%), Gaps = 49/351 (13%)

Query: 75  NGVAVITLDRPKALNAMNLDM--DIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
            GV VITL+RPKALNA++L+M   I     LD WE D  V  V+IEG+G R FCAG DI+
Sbjct: 11  GGVGVITLNRPKALNALSLEMIRAIDAA--LDAWEDDDAVAAVVIEGAGERGFCAGGDIR 68

Query: 133 GVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
            +  E  +  +     + F  EY L   I+ Y KPYI+LMDG+ MG G+GIS HG +RIV
Sbjct: 69  AL-YEAARAGDPLAADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIV 127

Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
           TE+T +AMPE GIG FPDVG +Y  ++ PG   +G YL +TG RIS  +DAL+AGL   +
Sbjct: 128 TERTKMAMPETGIGFFPDVGGTYFLSRAPGA--LGTYLALTGARIS-AADALYAGLADHF 184

Query: 253 VPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSV 312
           VPS +L +L +AL+++ +       + A LA +++       L      I  CF+ + +V
Sbjct: 185 VPSADLPALLDALISLRWDSGA-DVVDAALAAFATPAPAS-ELAAQRAWIDECFAGD-TV 241

Query: 313 RQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKT-----D 367
             II  L+           ++A +    +   +P SL +T     ++  A G T      
Sbjct: 242 EDIIAALEADGG-------EFAAKTADTLRSRSPTSLKVT---LEQLRRARGLTLEECLR 291

Query: 368 NEL-----------------------SKNPKWNPASLEEVNQSEVEALFEP 395
            EL                        +NPKW+PA+LE+V   +VEA F P
Sbjct: 292 RELRLALAMLRSPDFVEGVRAVLIDKDRNPKWSPATLEDVTPEDVEAFFAP 342

Length = 342

>gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score =  185 bits (472), Expect = 6e-55
 Identities = 117/378 (30%), Positives = 192/378 (50%), Gaps = 44/378 (11%)

Query: 57  ATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVL 116
           A      AEE V G      V VITL+RP+ LN ++L +      FL++WE D  V+ ++
Sbjct: 2   AQQVQNPAEEVVLGEEK-GRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELII 60

Query: 117 IEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVT 176
           I+G+G RAF AG D+K +  + ++  ++ L  +V    Y L   I  YKK  ++L+ G+ 
Sbjct: 61  IKGAG-RAFSAGGDLK-MFYDGRESDDSCL--EVVYRMYWLCYHIHTYKKTQVALVHGLV 116

Query: 177 MGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKR 236
           MG G G+    ++R+VTEKT+ A PE  +G   D GFSYI ++ PG   +G YL +TG R
Sbjct: 117 MGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPG--HLGEYLALTGAR 174

Query: 237 ISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLK 296
           ++   + +  GL T +VPS  L  L++ LL +   ++    +   + ++S D + +    
Sbjct: 175 LNG-KEMVACGLATHFVPSEKLPELEKRLLNLNSGDE--SAVQEAIEEFSKDVQADEDSI 231

Query: 297 L-LLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSL------ 349
           L     I  CFS + +V +II+     +S A  +  +W  E L+G+ + +P  L      
Sbjct: 232 LNKQSWINECFSKD-TVEEIIKAF---ESEASKTGNEWIKETLKGLRRSSPTGLKITLRS 287

Query: 350 -----------CLTQKY------FSKVASA---HGKTDNELSKN--PKWNPASLEEVNQS 387
                      CL +++           S     G     + K+  PKWNP++L+EV   
Sbjct: 288 IREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRALVIDKDNAPKWNPSTLDEVTDE 347

Query: 388 EVEALFEPLGTGVEELKV 405
           +V+ +F+P     EEL++
Sbjct: 348 KVDLVFQPF-KAREELQL 364

Length = 379

>gnl|CDD|178568 PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrolase

 Score =  177 bits (449), Expect = 1e-51
 Identities = 125/356 (35%), Positives = 177/356 (49%), Gaps = 54/356 (15%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + V ++TL+RPK LNA++  M  +       +E DP VK V+++G G RAFCAG D+  V
Sbjct: 17  SSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHG-RAFCAGGDVAAV 75

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
           V +I++  N  L    F+ EY L   ++ Y K  +S+++G+ MG G G+S HGR+RI TE
Sbjct: 76  VRDIEQG-NWRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATE 134

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVP 254
            T+ AMPE  +GLFPDVG SY  ++ P  G  G Y+G+TG R+   ++ L  GL T +VP
Sbjct: 135 NTVFAMPETALGLFPDVGASYFLSRLP--GFFGEYVGLTGARLDG-AEMLACGLATHFVP 191

Query: 255 SGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQ--------ITSCF 306
           S  L +L EA L    S DP      +L  Y+  P        L PQ        I  CF
Sbjct: 192 STRLTAL-EADLCRIGSNDP-TFASTILDAYTQHPR-------LKPQSAYHRLDVIDRCF 242

Query: 307 SSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSL----------------- 349
            S ++V +II  L++    A      W    +Q + K +P SL                 
Sbjct: 243 -SRRTVEEIISALERE---ATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQ 298

Query: 350 CLTQKYFSKVASAHGKTDNEL-----------SKNPKWNPASLEEVNQSEVEALFE 394
           CL ++Y        G+   +             KNPKW P  LE++  S VE  FE
Sbjct: 299 CLIREYRMVCHVMKGEISKDFVEGCRAILVDKDKNPKWEPRRLEDMKDSMVEQYFE 354

Length = 381

>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

 Score =  152 bits (386), Expect = 2e-44
 Identities = 60/186 (32%), Positives = 93/186 (50%), Gaps = 6/186 (3%)

Query: 73  HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
              GVA ITL+RP+  NA++L+M  +  + LDE E+DP V+ V++ G+G +AFCAG D+K
Sbjct: 5   RDGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAG-KAFCAGADLK 63

Query: 133 GVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
            + A                    L+  +    KP I+ ++G  +G G+ ++     RI 
Sbjct: 64  ELAALSDAG---EEARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIA 120

Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
            E     +PE  +GL P  G +    +   G +    L +TG+RIS   +AL  GL  + 
Sbjct: 121 AEDAKFGLPEVKLGLVPGGGGTQRLPRLV-GPARARELLLTGRRIS-AEEALELGLVDEV 178

Query: 253 VPSGNL 258
           VP   L
Sbjct: 179 VPDEEL 184

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195

>gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score =  153 bits (388), Expect = 1e-42
 Identities = 114/354 (32%), Positives = 178/354 (50%), Gaps = 42/354 (11%)

Query: 82  LDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD 141
           L+RP +LNA+ + M  + K   + WE +P +  VL++GSG RAFC+G D+  +   +  +
Sbjct: 57  LNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSG-RAFCSGADVVSL-YHLINE 114

Query: 142 RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP 201
            N       F   Y  +     Y KP +++MDG+TMG G GIS  G +R+VT+KT+ A P
Sbjct: 115 GNVEECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHP 174

Query: 202 ENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSL 261
           E  +G  PD G SY  ++ P  G +G YL +TG++++   + +  GL T Y  +  L  L
Sbjct: 175 EVQMGFHPDAGASYYLSRLP--GYLGEYLALTGQKLNG-VEMIACGLATHYCLNARL-PL 230

Query: 262 KEALLAVTFSEDPHQDIVALLAKYSS--DPEGEAPLKLLLPQITSCFSSEKSVRQIIEEL 319
            E  L    ++DP   I   LA+Y     P+  + L   +  I  CF  + +V +IIE L
Sbjct: 231 IEERLGKLLTDDPAV-IEDSLAQYGDLVYPDKSSVLH-KIETIDKCFGHD-TVEEIIEAL 287

Query: 320 KKHQSSAETSVAQWADEALQGMGKGAPFSL-----------------CLTQKY------F 356
              ++ A +S  +W  +AL+ + + +P SL                 CL ++Y       
Sbjct: 288 ---ENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGV 344

Query: 357 SKVAS---AHGKTDNELSKN--PKWNPASLEEVNQSEVEALFEPLGTGVEELKV 405
           SK  S     G     + K+  PKW+P SL EV++  V+  F PL     EL++
Sbjct: 345 SKWVSGDFCEGVRARLVDKDFAPKWDPPSLGEVSKDMVDCYFTPLDESESELEL 398

Length = 407

>gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score =  145 bits (367), Expect = 1e-39
 Identities = 104/343 (30%), Positives = 174/343 (50%), Gaps = 44/343 (12%)

Query: 82  LDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD 141
           L+RP ALNA+   M  + +     WE DP +  V+++GSG RAFCAG DI  V     + 
Sbjct: 52  LNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSG-RAFCAGGDI--VSLYHLRK 108

Query: 142 RNTP-LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM 200
           R +P  + + F++ YS I  +  Y KP++++++GVTMG G G+S  G +R+ T++T+ A 
Sbjct: 109 RGSPDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFAT 168

Query: 201 PENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGS 260
           PE  IG  PD G S+  +  P  G +G YLG+TG ++S  ++ L  GL T Y+ S  +  
Sbjct: 169 PETIIGFHPDAGASFNLSHLP--GRLGEYLGLTGLKLSG-AEMLACGLATHYIRSEEIPV 225

Query: 261 LKEALLAVTFSEDPHQDIVALLAKYS--SDPEGEAPLKLLLPQITSCFSSEKSVRQIIEE 318
           ++E L  +  ++DP   + + L K +  + PE    ++  +  +  CFS + +V +II+ 
Sbjct: 226 MEEQLKKL-LTDDPSV-VESCLEKCAEVAHPEKTGVIR-RIDLLEKCFSHD-TVEEIIDS 281

Query: 319 LKKHQSSAETSVAQWADEALQGMGKGAPFSL-----------------CLTQKYFSKVAS 361
           L+      + +   W    L+ + + +P SL                 CL ++Y   +  
Sbjct: 282 LEIEAGRRKDT---WCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIREYRMSLQG 338

Query: 362 AHGKTDNELSKN-----------PKWNPASLEEVNQSEVEALF 393
             G       +            PKW+P SLE+V++  V+  F
Sbjct: 339 LIGPMSGNFCEGVRARLIDKDEAPKWDPPSLEKVSEDMVDDYF 381

Length = 401

>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

 Score =  134 bits (340), Expect = 5e-37
 Identities = 59/182 (32%), Positives = 97/182 (53%), Gaps = 11/182 (6%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+AVITL+RP+ LNA+NL+M  +    LDE E+DP V+ V++ G+G +AF AG D+K  
Sbjct: 13  DGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAG-KAFSAGADLK-- 69

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             E+    +      +      L+  +++  KP I+ ++G  +G G+ ++     RI  E
Sbjct: 70  --ELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAE 127

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAK--GPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
                +PE  +GL P  G +    +  G G       L +TG+ I + ++AL  GL  + 
Sbjct: 128 DAKFGLPEVNLGLLPGDGGTQRLPRLLGRGR---AKELLLTGEPI-SAAEALELGLVDEV 183

Query: 253 VP 254
           VP
Sbjct: 184 VP 185

Length = 257

>gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional

 Score =  102 bits (255), Expect = 5e-25
 Identities = 48/145 (33%), Positives = 74/145 (51%), Gaps = 11/145 (7%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           G A++T+ RP  LNA+NL+M  ++ S L +  +DP+++ V++ G G RAFC G D+    
Sbjct: 9   GYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEG-RAFCVGADLSEFA 67

Query: 136 AEIQKD-RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
            +   D R T      F   Y +I +I    K YIS ++GVT G  IGI+    ++  + 
Sbjct: 68  PDFAIDLRET------F---YPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASR 118

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAK 219
                     +GL  D G +Y   K
Sbjct: 119 DVKFVTAFQRLGLASDTGVAYFLLK 143

Length = 248

>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional

 Score = 94.5 bits (236), Expect = 3e-22
 Identities = 53/198 (26%), Positives = 91/198 (45%), Gaps = 19/198 (9%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSF---LDEWESDPRVKCVLIEGSGPRAFCAGMDI 131
           +GV  IT++RP   NA+   M   Y++    L+   +DP V+ V++ G+G RAF AG DI
Sbjct: 13  DGVLTITINRPDKKNALTAAM---YQALADALEAAATDPAVRVVVLTGAG-RAFSAGGDI 68

Query: 132 KGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRI 191
           K         +    +  V       +  I+   KP ++ ++G  +G G+ ++       
Sbjct: 69  KDFPK--APPKPPDELAPVNRF----LRAIAALPKPVVAAVNGPAVGVGVSLALACDLVY 122

Query: 192 VTEKTLLAMPENGIGLFPDVGFSYI--AAKGPGGGSVGAYLGMTGKRISTPSDALFAGLG 249
            +E    ++P   +GL PD G S +     G    +  A + + G+ +S   +AL  GL 
Sbjct: 123 ASESAKFSLPFAKLGLCPDAGGSALLPRLIGR---ARAAEMLLLGEPLSAE-EALRIGLV 178

Query: 250 TDYVPSGNLGSLKEALLA 267
              VP+  L +  +A  A
Sbjct: 179 NRVVPAAELDAEADAQAA 196

Length = 259

>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family

 Score = 87.0 bits (216), Expect = 2e-19
 Identities = 76/249 (30%), Positives = 116/249 (46%), Gaps = 19/249 (7%)

Query: 74  PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKG 133
             GVAVI LDRP+A+NA++ ++  +    L++ E DP VK +++ G GP AF AG DIK 
Sbjct: 5   EAGVAVIKLDRPEAVNALSAELLTELIQALEKLEQDPSVKAIVLTG-GPGAFSAGADIKE 63

Query: 134 VVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
           + AE    +          A   L  ++ +  KP I+ ++G  +G G+ ++    YRI  
Sbjct: 64  MAAEPLAQQAQFS----LEA-QDLWSRLEDLPKPVIAAVNGYALGGGLELALACDYRIAA 118

Query: 194 EKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGM--TGKRISTPSDALFAGLGTD 251
           +     +PE  +G+ P  G +    +  G   V A L M  TG+RI    +AL  GL   
Sbjct: 119 DNAKFGLPEVKLGIIPGAGGTQRLPRIIG---VSAALEMLLTGRRIR-AQEALKMGLVDK 174

Query: 252 YVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLAKYSS---DPEGEAPLKLLLPQITSCFS 307
            VP   L    EA+ LA   ++ P   + AL A   +   D   E      L    + FS
Sbjct: 175 VVPEEQLVE--EAIELAQRLADKPPLALAALKAAMRAALEDALPEV-RAQALRLYPAPFS 231

Query: 308 SEKSVRQII 316
           ++     I 
Sbjct: 232 TDDVKEGIQ 240

This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245

>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated

 Score = 80.2 bits (198), Expect = 5e-17
 Identities = 48/139 (34%), Positives = 75/139 (53%), Gaps = 9/139 (6%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV- 134
            +AV+T++RPKALNA+N +   +  + LD+ E+D  V  V++ G+G +AF AG DI  + 
Sbjct: 13  HIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMK 72

Query: 135 -VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
            + E +  +   L  KVF        K+    KP I+ ++G  +G G  +S     RI +
Sbjct: 73  DLNEEEGRKFGLLGNKVFR-------KLENLDKPVIAAINGFALGGGCELSMACDIRIAS 125

Query: 194 EKTLLAMPENGIGLFPDVG 212
           EK     PE G+G+ P  G
Sbjct: 126 EKAKFGQPEVGLGITPGFG 144

Length = 260

>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional

 Score = 79.0 bits (195), Expect = 9e-17
 Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 3/138 (2%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           G+A++TL+RP+ LNA+N  +  +  + LD  E D  V+ V++ G+G RAF AG DI    
Sbjct: 12  GIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFS 71

Query: 136 AEIQKDRNTPLVPKVFTAE-YSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
           A +    +  L  + F     ++  ++  + KP I+ ++G+  G G  I+      I +E
Sbjct: 72  ASVAAGADVAL--RDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASE 129

Query: 195 KTLLAMPENGIGLFPDVG 212
           + L A PE  +G+ P  G
Sbjct: 130 RALFAKPEIRLGMPPTFG 147

Length = 260

>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional

 Score = 76.7 bits (189), Expect = 6e-16
 Identities = 45/176 (25%), Positives = 85/176 (48%), Gaps = 10/176 (5%)

Query: 65  EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRA 124
            + +  +     V  ITL+RP+A NA++L +  + ++ L +   +  V+ V++ G+G +A
Sbjct: 2   LQNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKA 61

Query: 125 FCAGMDIK--GVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIG 182
           FCAG D+K    + E Q      L+          +  + +  +P I+ ++G+ +G G+ 
Sbjct: 62  FCAGADLKERAGMNEEQVRHAVSLIRTT-------MEMVEQLPQPVIAAINGIALGGGLE 114

Query: 183 ISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRIS 238
           ++    +RI  E   L + E  + + P  G +    +  G G     L  TG+RIS
Sbjct: 115 LALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKE-LIYTGRRIS 169

Length = 260

>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional

 Score = 74.7 bits (184), Expect = 3e-15
 Identities = 55/209 (26%), Positives = 92/209 (44%), Gaps = 23/209 (11%)

Query: 64  AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPR 123
           A  F         V ++TL+RP+ +NA++LD   + +   D++ +DP     ++ G+G +
Sbjct: 2   ALPFST-VERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDK 60

Query: 124 AFCAGMDIKGVVAEIQKDRNTPLVPKVF---TAEYSLICKISEYKKPYISLMDGVTMGFG 180
           AF AG D+K   A     R  P     F   T+ + L        KP I+ ++GV MG G
Sbjct: 61  AFSAGNDLKEQAA--GGKRGWP--ESGFGGLTSRFDL-------DKPIIAAVNGVAMGGG 109

Query: 181 IGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTP 240
             ++      +  E    A+PE  +GL    G  +   +  G       + +TG+R++  
Sbjct: 110 FELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMI-LTGRRVTAR 168

Query: 241 SDALFAGLGTDYVPSGNLGSLKEALLAVT 269
            + L  G   + VP+G      E L A  
Sbjct: 169 -EGLELGFVNEVVPAG------ELLAAAE 190

Length = 259

>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional

 Score = 73.5 bits (181), Expect = 9e-15
 Identities = 58/215 (26%), Positives = 96/215 (44%), Gaps = 21/215 (9%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
            V  +TL+RP+A NA++  +     + L E ++D  V  V++ G+ P AFCAG+D+K + 
Sbjct: 13  RVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADP-AFCAGLDLKELG 71

Query: 136 AEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK 195
            +               A  +        +KP I  ++G  +  G+ ++      I +E+
Sbjct: 72  GDGSAYGAQ-------DALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASER 124

Query: 196 TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAY----LGMTGKRISTPSDALFAGLGTD 251
              A     +G+ P  G S    + P    VG      + +TG  +   +DAL AGL T+
Sbjct: 125 ARFADTHARVGILPGWGLS---VRLP--QKVGIGRARRMSLTGDFLD-AADALRAGLVTE 178

Query: 252 YVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLAKY 285
            VP   L  L  A  LA + + +    + AL A Y
Sbjct: 179 VVPHDEL--LPRARRLAASIAGNNPAAVRALKASY 211

Length = 258

>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional

 Score = 73.2 bits (180), Expect = 1e-14
 Identities = 64/256 (25%), Positives = 102/256 (39%), Gaps = 57/256 (22%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           G+  IT + P   NAM+LDM       L   E D  ++ V++ G+G +AF +G DI    
Sbjct: 20  GLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADI---- 75

Query: 136 AEIQKDRNTPLVPKVF----TAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRI 191
           ++ ++ R+       +     A  +    +++Y KP I+ + G  +G G+GI+     RI
Sbjct: 76  SQFEESRSDAEAVAAYEQAVEAAQAA---LADYAKPTIACIRGYCIGGGMGIALACDIRI 132

Query: 192 VTEKTLLAMPENGIGLFPDVGFSYIAAK------GPGGGSVGAYLGMTGKRISTPSDALF 245
             E +   +P   +GL    G+ Y   K      GP   S    L  T +R    ++AL 
Sbjct: 133 AAEDSRFGIPAARLGL----GYGYDGVKNLVDLVGP---SAAKDLFYTARRF-DAAEALR 184

Query: 246 AGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSC 305
            GL              + L           D  A +A       G APL L        
Sbjct: 185 IGLVHRVTA-------ADDLETAL------ADYAATIA-------GNAPLTL-------- 216

Query: 306 FSSEKSVRQIIEELKK 321
               ++ ++ I EL K
Sbjct: 217 ----RAAKRAIAELLK 228

Length = 269

>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 48/149 (32%), Positives = 70/149 (46%), Gaps = 14/149 (9%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEW-ESDPRVKCVLIEGSGPRAFCAGMDIKG 133
             VA I L+RP+ALNA++  M  +    L E  ES   +  V++ G+G R F AG DIK 
Sbjct: 14  GRVATIMLNRPEALNALDEPMLKELLQALKEVAESSAHI--VVLRGNG-RGFSAGGDIKM 70

Query: 134 VVA---EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYR 190
           +++   E + D     + ++    Y++        K  IS + G   G G+ I+    Y 
Sbjct: 71  MLSSNDESKFDGVMNTISEIVVTLYTM-------PKLTISAIHGPAAGLGLSIALTADYV 123

Query: 191 IVTEKTLLAMPENGIGLFPDVGFSYIAAK 219
           I      LAM   GIGL PD G  +   K
Sbjct: 124 IADISAKLAMNFIGIGLIPDGGGHFFLQK 152

Length = 260

>gnl|CDD|205939 pfam13766, ECH_C, 2-enoyl-CoA Hydratase C-terminal region

 Score = 66.0 bits (162), Expect = 2e-13
 Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 39/128 (30%)

Query: 295 LKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQK 354
           L      I  CFS + +V +I+  L+   S       +WA + L+ +  G+P SL +T  
Sbjct: 1   LAEHREAIDRCFSGD-TVEEILAALEADGS-------EWAAKTLKTLRSGSPLSLKVT-- 50

Query: 355 YFSKVASAHGKT-----DNEL-----------------------SKNPKWNPASLEEVNQ 386
              ++    G +       E                         +NPKWNPA+LEEV  
Sbjct: 51  -LEQLRRGRGLSLAECLRMEYRLAVRCMAHGDFAEGVRALLIDKDRNPKWNPATLEEVTA 109

Query: 387 SEVEALFE 394
            +V+A F 
Sbjct: 110 EDVDAFFA 117

This is the C-terminal region of enoyl-CoA hydratase. Length = 117

>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional

 Score = 69.0 bits (169), Expect = 4e-13
 Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 12/118 (10%)

Query: 72  VHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDI 131
           V  +GVAVITL+RP  LNA    M+ +  + +D  E+DP V+ +++ G+G R FCAG D+
Sbjct: 11  VADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAG-RGFCAGADM 69

Query: 132 KGVVA----EIQKDRN-TPLV---PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGI 181
             +      + ++D +  P V      +   Y  +  +   +KP I+ ++G   G G+
Sbjct: 70  GELQTIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLTAL---RKPVIAAINGACAGIGL 124

Length = 272

>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase

 Score = 68.3 bits (167), Expect = 4e-13
 Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 21/189 (11%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+  + LDRP+A NA+  +M    +S  ++ ++D   + V++  S P  FCAG D+   
Sbjct: 3   SGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADL--- 59

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKK---PYISLMDGVTMGFGIGISGHGRYRI 191
                K+R      +V     SL    S  +    P I++++G  +G G+ ++     RI
Sbjct: 60  -----KERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRI 114

Query: 192 VTEKTLLAMPENGIGLFPDVG----FSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAG 247
             E+ +  +PE G+ + P  G       +      G S    L  TG+RI    +A   G
Sbjct: 115 CGEEAVFGLPETGLAIIPGAGGTQRLPRLV-----GRSRAKELIFTGRRIGA-REAASMG 168

Query: 248 LGTDYVPSG 256
           L    VP+G
Sbjct: 169 LVNYCVPAG 177

Length = 251

>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated

 Score = 67.7 bits (166), Expect = 8e-13
 Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 8/143 (5%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVA +TL+RP+A NA++  M    ++ LD   +DP V+ V++  +G  AFCAG D+K  
Sbjct: 19  DGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGK-AFCAGHDLK-- 75

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             E++  R       +F     ++  I    +P I+ + G+    G  +       +  +
Sbjct: 76  --EMRAARGLAYFRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAAD 133

Query: 195 KTLLAMPENGIGLF---PDVGFS 214
               A+P   IGLF   P V  S
Sbjct: 134 TARFAVPGVNIGLFCSTPMVALS 156

Length = 266

>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial

 Score = 68.3 bits (167), Expect = 2e-12
 Identities = 54/189 (28%), Positives = 93/189 (49%), Gaps = 13/189 (6%)

Query: 54  RTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKA-LNAMNLDMDIKYKSFLDEWESDPRV 112
           R F+T AA  A       V    VAV+ +D P + +N ++ ++  ++K  ++E  ++  +
Sbjct: 1   RLFSTSAALMARTHRHYEVK-GDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAI 59

Query: 113 KCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLM 172
           K  ++    P +F AG DI+ + A       T L  +       +  +I + +KP ++ +
Sbjct: 60  KSAVLISGKPGSFVAGADIQMIAACKTAQEVTQLSQEG----QEMFERIEKSQKPIVAAI 115

Query: 173 DGVTMGFGIGISGHGRYRIVTE--KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYL 230
            G  +G G+ ++    YRI T+  KTLL +PE  +GL P  G +    + P    V A L
Sbjct: 116 SGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGT---QRLPKLTGVPAAL 172

Query: 231 GM--TGKRI 237
            M  TGK+I
Sbjct: 173 DMMLTGKKI 181

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737

>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 57/215 (26%), Positives = 95/215 (44%), Gaps = 38/215 (17%)

Query: 64  AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPR 123
           A + V      +GVA++ L+RP+A NA+N+++  +      E   DP ++ +++ G G +
Sbjct: 5   ATDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTG-GEK 63

Query: 124 AFCAGMDIKGVVA----EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGF 179
            F AG DIK        E+   R+T         E      I++  KP I+ ++G  +G 
Sbjct: 64  VFAAGADIKEFATAGAIEMYL-RHT---------ER-YWEAIAQCPKPVIAAVNGYALGG 112

Query: 180 GIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG-----SVGAY----L 230
           G  ++ H    +  E      PE  +GL P          G GG      +VG +    +
Sbjct: 113 GCELAMHADIIVAGESASFGQPEIKVGLMP----------GAGGTQRLVRAVGKFKAMRM 162

Query: 231 GMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL 265
            +TG  +  P +AL  GL ++ V      +L  AL
Sbjct: 163 ALTGCMVPAP-EALAIGLVSEVVEDEQ--TLPRAL 194

Length = 261

>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase

 Score = 64.8 bits (158), Expect = 8e-12
 Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 25/133 (18%)

Query: 58  TMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLI 117
           TM    +E  +      NG+A IT++RPKALNA+   M ++  +     + D  VK +++
Sbjct: 1   TMTQTVSENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIIL 60

Query: 118 EGSGPRAFCAGMDI-------KGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYIS 170
            GSG RAFC+G+D+       KG V +++ D   P+             ++   +KP I 
Sbjct: 61  TGSG-RAFCSGVDLTAAEEVFKGDVKDVETD---PVA------------QMERCRKPIIG 104

Query: 171 LMDG--VTMGFGI 181
            ++G  +T GF I
Sbjct: 105 AINGFAITAGFEI 117

Length = 265

>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional

 Score = 64.2 bits (157), Expect = 1e-11
 Identities = 38/137 (27%), Positives = 56/137 (40%), Gaps = 24/137 (17%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK-- 132
            G+A IT +RP A NAM   M        +   +DP ++ V++ G+G +AF AG DI   
Sbjct: 16  GGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQF 75

Query: 133 --------GVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGIS 184
                    V  E + DR       V  A       + + + P I+ + G  +G G  I+
Sbjct: 76  RAFSTAEDAVAYERRIDR-------VLGA-------LEQLRVPTIAAIAGACVGGGAAIA 121

Query: 185 GHGRYRIVTEKTLLAMP 201
                RI T       P
Sbjct: 122 AACDLRIATPSARFGFP 138

Length = 262

>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB

 Score = 63.7 bits (155), Expect = 2e-11
 Identities = 40/163 (24%), Positives = 70/163 (42%), Gaps = 5/163 (3%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           GVA +TL+RP  LN+   +M ++ +  L+  E D   + +++ G+G R FCAG D+    
Sbjct: 8   GVARLTLNRPDKLNSFTAEMHLELREALERVERD-DARALMLTGAG-RGFCAGQDLSER- 64

Query: 136 AEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK 195
                     L   + T    L+ ++     P +  ++GV  G G  ++      +  E 
Sbjct: 65  -NPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAES 123

Query: 196 TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRIS 238
                    IGL PD G ++   +  G       L M G+++ 
Sbjct: 124 ARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMG-LAMLGEKLD 165

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256

>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional

 Score = 62.3 bits (152), Expect = 5e-11
 Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 14/141 (9%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
            VAVITL+ P A NA++  +  +    LD+ E D  V+ V+I G G R F AG DIK   
Sbjct: 11  HVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEG-RFFSAGADIKEFT 68

Query: 136 AEIQKDRNTPLVPK---VFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
           +  + ++ T L       F        ++ ++ KP I+ + G  +G G+ ++     R  
Sbjct: 69  SVTEAEQATELAQLGQVTFE-------RVEKFSKPVIAAIHGAALGGGLELAMSCHIRFA 121

Query: 193 TEKTLLAMPENGIGLFPDVGF 213
           TE   L +PE  +GL P  GF
Sbjct: 122 TESAKLGLPELNLGLIP--GF 140

Length = 257

>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional

 Score = 61.3 bits (149), Expect = 1e-10
 Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 3/143 (2%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDP-RVKCVLIEGSGPRAFCAGMDIKGV 134
           GVA++TLD P+ +NA+++DM       LD  E     V+C+++ G+G R FC G +++G 
Sbjct: 13  GVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAG-RGFCTGANLQGR 71

Query: 135 VAEIQKDRNTPLVPKVFTAEYS-LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
            +  ++  +           Y   + ++     P ++ ++G   G G+  +  G   +  
Sbjct: 72  GSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCA 131

Query: 194 EKTLLAMPENGIGLFPDVGFSYI 216
                      IGL PD G +++
Sbjct: 132 RSAYFLQAFRRIGLVPDGGSTWL 154

Length = 266

>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional

 Score = 60.3 bits (147), Expect = 2e-10
 Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 19/185 (10%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A + L+RP  +NA++  M  +  + +   + D  ++ V++ G G  AFCAG+D+K V
Sbjct: 11  DGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEG-GAFCAGLDVKSV 69

Query: 135 VAEIQKDRN--TPLVP-------KVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISG 185
            +            +P       +V      L         P I+ ++GV  G G+ I+ 
Sbjct: 70  ASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPV-------PVIAALEGVCFGGGLQIAL 122

Query: 186 HGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALF 245
               RI    T L++ E   GL PD+    ++ +G     V   L  T  R+ +  +AL 
Sbjct: 123 GADIRIAAPDTKLSIMEAKWGLVPDMA-GTVSLRGLVRKDVARELTYTA-RVFSAEEALE 180

Query: 246 AGLGT 250
            GL T
Sbjct: 181 LGLVT 185

Length = 262

>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 13/136 (9%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
            VAV+TLD P  +NA++ ++  +  +  DE    P V+ V++ G+G + FCAG D+KG  
Sbjct: 13  HVAVVTLDNP-PVNALSRELRDELIAVFDEISERPDVRVVVLTGAG-KVFCAGADLKGRP 70

Query: 136 AEIQKDRNTP----LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRI 191
             I+   +         + F A       I E  KP I+ ++G  +G G+G+       +
Sbjct: 71  DVIKGPGDLRAHNRRTRECFHA-------IRECAKPVIAAVNGPALGAGLGLVASCDIIV 123

Query: 192 VTEKTLLAMPENGIGL 207
            +E  +  +PE  +GL
Sbjct: 124 ASENAVFGLPEIDVGL 139

Length = 257

>gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional

 Score = 60.0 bits (146), Expect = 4e-10
 Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 17/121 (14%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A ITL+RP  LNA  + M  +     D  ++D  V+ V++ G+G RAFCAG D+   
Sbjct: 12  DGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAG-RAFCAGADLSAG 70

Query: 135 VAEIQKDRNTPLVPKVFTAEYS--------------LICKISEYKKPYISLMDGVTMGFG 180
                 D + P  P     E                +  +I +  KP I+ ++G  +G G
Sbjct: 71  GNTF--DLDAPRTPVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVG 128

Query: 181 I 181
            
Sbjct: 129 A 129

Length = 296

>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional

 Score = 59.0 bits (143), Expect = 7e-10
 Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 8/181 (4%)

Query: 73  HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
             +GVA+IT++ P   NA+  +M  + ++ +   E+DP V  +++ G+G  AFCAG D+ 
Sbjct: 9   VDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGK-AFCAGADLT 67

Query: 133 GVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
            + A   +     L        Y     ++    P I+ ++G  +G G+ ++     RI 
Sbjct: 68  ALGAAPGRPAEDGL-----RRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIA 122

Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
             K L       +GL P  G +++  +  G     A L + G R    + A+  GL    
Sbjct: 123 GPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAAL-LFGMRFDAEA-AVRHGLALMV 180

Query: 253 V 253
            
Sbjct: 181 A 181

Length = 249

>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional

 Score = 58.5 bits (142), Expect = 8e-10
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 6/73 (8%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
            V +IT++RP+A NA+N  +     + LDE ++DP +   ++ G+G   FCAGMD+K   
Sbjct: 12  RVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAG-GTFCAGMDLKAFA 70

Query: 136 AEIQKDRNTPLVP 148
                    P +P
Sbjct: 71  R-----GERPSIP 78

Length = 254

>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 28/189 (14%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
            V ++TL+RP+A NA+N  +  +  + L+   +D  +   +I G+  R F AG D+  + 
Sbjct: 11  RVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGN-ARFFAAGADLNEMA 69

Query: 136 AEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK 195
              +KD    L   +      L  ++  + KP I+ ++G  +G G  ++      I  E 
Sbjct: 70  ---EKD----LAATLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGEN 122

Query: 196 TLLAMPENGIGLFPDVGFSYIAAKGPGGG-----SVGAYLGM----TGKRISTPSDALFA 246
               +PE  +G+ P          G GG      SVG  L      TG+ I T   A  A
Sbjct: 123 ARFGLPEITLGIMP----------GAGGTQRLIRSVGKSLASQMVLTGESI-TAQQAQQA 171

Query: 247 GLGTDYVPS 255
           GL ++  P 
Sbjct: 172 GLVSEVFPP 180

Length = 255

>gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 10/112 (8%)

Query: 73  HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEW---ESDPRVKCVLIEGSGPRAFCAGM 129
            P GV  I L+ P ALNA +  M   ++   D W   + DP V+ VLI G G +AF AG 
Sbjct: 18  PPPGVLEIVLNGPGALNAADARM---HRELADIWRDVDRDPDVRVVLIRGEG-KAFSAGG 73

Query: 130 DIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGI 181
           D+  +V E+  D       +V+     L+  +    KP +S + G  +G G+
Sbjct: 74  DL-ALVEEMADDFEV--RARVWREARDLVYNVINCDKPIVSAIHGPAVGAGL 122

Length = 268

>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMD 130
           GVA +TL+RP  LN+   +M  + +  LD+ E D   + +L+ G+G R FCAG D
Sbjct: 13  GVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAG-RGFCAGQD 65

Length = 262

>gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKG 133
            +A ITL+RP+  NA+  D  ++ ++ ++  + DP V  +L+ G+G + FCAG D+  
Sbjct: 19  RIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAG-KGFCAGYDLSA 75

Length = 302

>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 8/193 (4%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
            VA +TL+RP   NA N  +  +  +     ++D  V+ V++ G+G  AFCAG D+  + 
Sbjct: 13  QVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGK-AFCAGADLNWMK 71

Query: 136 AEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK 195
                  +         A+  ++  I    KP I+ + G     G+G+       +  + 
Sbjct: 72  KMAGYSDDENRADARRLAD--MLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADH 129

Query: 196 TLLAMPENGIGLFPDVGFSY-IAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVP 254
            +  + E  +GL P     Y I A G           +T +R    ++AL  GL  + VP
Sbjct: 130 AVFCLSEVRLGLIPATISPYVIRAMGER---AARRYFLTAERF-DAAEALRLGLVHEVVP 185

Query: 255 SGNLGSLKEALLA 267
           +  L +  + LLA
Sbjct: 186 AEALDAKVDELLA 198

Length = 262

>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 61/203 (30%), Positives = 95/203 (46%), Gaps = 32/203 (15%)

Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V +ITL+RPKALNA+N  +  +  + L  +++D  +  ++I GS  +AF AG DIK +  
Sbjct: 14  VGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGS-EKAFAAGADIKEMAD 72

Query: 137 EIQKDRNTPLVPKVFTAEY-SLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK 195
               D        V+  +Y +   K++  +KP I+ + G  +G G  ++      I  + 
Sbjct: 73  LSFMD--------VYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADT 124

Query: 196 TLLAMPENGIGLFPDVGFSYIAAKGPGGG-----SVGAYLGM----TGKRISTPSDALFA 246
                PE  +G+ P          G GG      +VG    M    TG R+   ++A  A
Sbjct: 125 AKFGQPEIKLGVLP----------GMGGSQRLTRAVGKAKAMDLCLTG-RMMDAAEAERA 173

Query: 247 GLGTDYVPSGNLGSLKEALLAVT 269
           GL +  VP+  L  L EAL A T
Sbjct: 174 GLVSRVVPADKL--LDEALAAAT 194

Length = 257

>gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase; Validated

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 15/198 (7%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A +TL+RP+  NAM+  ++ +    LD  E D     +++ G+G  A+ AGMD+K  
Sbjct: 16  DGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAG-DAWSAGMDLKEY 74

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             E        L  ++    Y    ++  Y+KP I++++G   G G          I  +
Sbjct: 75  FRETDAQPEI-LQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAAD 133

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG----AYLGMTGKRISTPSDALFAGLGT 250
           +    + E   G+ P  G S   A      +VG     Y  MTG+   T   A   GL  
Sbjct: 134 EAQFGLSEINWGIPPGGGVSKAMAD-----TVGHRDALYYIMTGETF-TGRKAAEMGLVN 187

Query: 251 DYVPSGNLGSLKEALLAV 268
           + VP   L  L+     +
Sbjct: 188 ESVP---LAQLRARTREL 202

Length = 275

>gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional

 Score = 55.9 bits (135), Expect = 6e-09
 Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 19/172 (11%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + +A +TL+RP+  N  N+ M  +    L   E DP V+ +LI  +G   F  G D+  +
Sbjct: 10  DDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGK-VFSVGGDLVEM 68

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKIS----EYKKPYISLMDGVTMGFGIGISGHGRYR 190
              + +D    LV     AE  L+ +IS    +  KP I  +DG   G    ++    + 
Sbjct: 69  KRAVDEDDVQSLVK---IAE--LVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFC 123

Query: 191 IVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG----AYLGMTGKRIS 238
           I + KT       G+GL PD G  ++  +     ++G     +L MTG+ ++
Sbjct: 124 IASTKTKFIQAFVGVGLAPDAGGLFLLTR-----AIGLNRATHLAMTGEALT 170

Length = 255

>gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 9/191 (4%)

Query: 73  HPN-GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDI 131
           HP   +A+ITL+RP+ +N+M  D+ +  K  L E   D  V+ V++ G+G R F +G D 
Sbjct: 15  HPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAG-RGFSSGADH 73

Query: 132 KGVVAEIQKDRNTPLVPKVFTAEY--SLICKISEYKKPYISLMDGVTMGFGIGISGHGRY 189
           K        +  T     + + E    +I  +    +P I+ ++G  +G G+ ++     
Sbjct: 74  KSAGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADI 133

Query: 190 RIVTEKTLL--AMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAG 247
           R+ +       A   NG+    ++G SY+  +    GS  A+  M   R     +A   G
Sbjct: 134 RVASSSAYFRAAGINNGLTA-SELGLSYLLPRAI--GSSRAFEIMLTGRDVDAEEAERIG 190

Query: 248 LGTDYVPSGNL 258
           L +  VP   L
Sbjct: 191 LVSRQVPDEQL 201

Length = 276

>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 14/173 (8%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + V  + L+RP   NA++LD   ++   L   + +P V  +++ G+G   FC+G+D+K  
Sbjct: 16  SSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDH-FCSGIDLK-T 73

Query: 135 VAEIQKD-------RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHG 187
           +  I +        R+   + +        I  I + +KP I+ + G  +G G+ I    
Sbjct: 74  LNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTAC 133

Query: 188 RYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG--GGSVGAYLGMTGKRIS 238
             R  +E    ++ E  + +  D+G      + P   G      L +TG+R S
Sbjct: 134 DIRYCSEDAFFSVKEVDLAITADLG---TLQRLPSIVGYGNAMELALTGRRFS 183

Length = 275

>gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 6/133 (4%)

Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           VA++TL+ P A N    D     K  + E  +D  V  ++I G G + F AG D+  + A
Sbjct: 13  VAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLN-LFA 70

Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
           +  K     +  + F   +     +S ++   I+ ++G  MG G+  +     RI  E+ 
Sbjct: 71  DGDKAVAREMA-RRFGEAFE---ALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQA 126

Query: 197 LLAMPENGIGLFP 209
            +A+PE  +GL P
Sbjct: 127 QMALPEASVGLLP 139

Length = 258

>gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 16/197 (8%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
            GVA +T+    +LN +   + +     L    +DP V+ +++ G+G +AF  G DIK +
Sbjct: 15  RGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEM 74

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICK-ISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
                         + F +    +C  +  +  P I+ + G  +G G+ ++     RI  
Sbjct: 75  ATL------DQASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAA 128

Query: 194 EKTLLAMPENGIGLFPDVGFSYI-AAKGPG--GGSVGAYLGMTGKRISTPSDALFAGLGT 250
                 MPE  +G+ P V    I AA  P   G +   +L +TG+ I     AL  GL  
Sbjct: 129 HDAQFGMPEVRVGI-PSV----IHAALLPRLIGWARTRWLLLTGETIDAAQ-ALAWGLVD 182

Query: 251 DYVPSGNLGSLKEALLA 267
             VP   L +  E L A
Sbjct: 183 RVVPLAELDAAVERLAA 199

Length = 256

>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 6/199 (3%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           GVA +TL+RP+  NA++  M  +  +      +D  V+ V++ G+G ++FCAG D+  + 
Sbjct: 14  GVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAG-KSFCAGGDLGWMR 72

Query: 136 AEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK 195
           A++  DR T +      A   ++  +++  KP I  + G   G G+G+       I    
Sbjct: 73  AQMTADRATRIEEARRLAM--MLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSG 130

Query: 196 TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS 255
               + E  +GL P     Y+ A+   G +    + M+ +      +A+  GL +  VP+
Sbjct: 131 ARFGLTETRLGLIPATISPYVVAR--MGEANARRVFMSARLFDA-EEAVRLGLLSRVVPA 187

Query: 256 GNLGSLKEALLAVTFSEDP 274
             L +  EA +    S  P
Sbjct: 188 ERLDAAVEAEVTPYLSCAP 206

Length = 262

>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated

 Score = 53.3 bits (128), Expect = 6e-08
 Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 3/138 (2%)

Query: 74  PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKG 133
           P G A + L R    NA N  M  +    LD+ +SD  ++ +L+ G G R F AG D+  
Sbjct: 13  PRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRG-RHFSAGADLAW 71

Query: 134 VVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
           +      D NT L      AE  L+  +   K P ++++ G   G  +G+       I  
Sbjct: 72  MQQSADLDYNTNLDDARELAE--LMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGA 129

Query: 194 EKTLLAMPENGIGLFPDV 211
           +     + E  IGL P V
Sbjct: 130 DDAQFCLSEVRIGLAPAV 147

Length = 265

>gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 20/139 (14%)

Query: 71  NVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMD 130
                G+A +T+D P  +NA+           +    +DP  + V++   G R F AG+D
Sbjct: 6   TTPEPGIAEVTVDYPP-VNALPSAGWFALADAITAAGADPDTRVVVLRAEG-RGFNAGVD 63

Query: 131 IKGVVAEIQKD-RNTPLVP------KVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGI 183
           IK    E+Q     T L+         F A Y       E   P I+ + G  +G GIG+
Sbjct: 64  IK----ELQATPGFTALIDANRGCFAAFRAVY-------ECAVPVIAAVHGFCLGGGIGL 112

Query: 184 SGHGRYRIVTEKTLLAMPE 202
            G+    + ++     +PE
Sbjct: 113 VGNADVIVASDDATFGLPE 131

Length = 249

>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ

 Score = 54.1 bits (130), Expect = 9e-08
 Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 13/189 (6%)

Query: 71  NVHPNGVAVITLDRP-KALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGM 129
            V  +G+A++T+D P + +N +  +   +    L + + D  ++ +++    P  F AG 
Sbjct: 5   TVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGA 64

Query: 130 DIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGI--GISGHG 187
           DI  + A         L  +       L  ++     P ++ + G  +G G+   ++ H 
Sbjct: 65  DISMLAACQTAGEAKALAQQ----GQVLFAELEALPIPVVAAIHGACLGGGLELALACHS 120

Query: 188 RYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGM--TGKRISTPSDALF 245
           R     +KT+L +PE  +GL P  G +    + P    V   L M  TGK++     AL 
Sbjct: 121 RVCSDDDKTVLGLPEVQLGLLPGSGGT---QRLPRLIGVSTALDMILTGKQLR-AKQALK 176

Query: 246 AGLGTDYVP 254
            GL  D VP
Sbjct: 177 LGLVDDVVP 185

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699

>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional

 Score = 52.4 bits (126), Expect = 9e-08
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 11/189 (5%)

Query: 79  VITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEI 138
           ++T++RP+A NA++ +M        D  ++DP ++  ++ G+G  AFCAGMD+K    + 
Sbjct: 17  IVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGG-AFCAGMDLKAATKKP 75

Query: 139 QKD--RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
             D  ++    P    A    + K     KP I+ ++G  +  G  I      R+  E  
Sbjct: 76  PGDSFKDGSYDPSRIDA----LLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESA 131

Query: 197 LLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSG 256
              + E    LFP +G S +        +V   L +TG+ I+   +A   GL    VP G
Sbjct: 132 KFGISEAKWSLFP-MGGSAVRLVRQIPYTVACDLLLTGRHITAA-EAKEIGLIGHVVPDG 189

Query: 257 NLGSLKEAL 265
              +L +AL
Sbjct: 190 Q--ALDKAL 196

Length = 263

>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK-- 132
           + VA +TL+RP   NAMN     +        ++DP V+ V++ GSG + F  G+D+   
Sbjct: 14  DHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSG-KHFSYGIDLPAM 72

Query: 133 -GVVAEIQKD 141
            GV  ++ KD
Sbjct: 73  AGVFGQLGKD 82

Length = 272

>gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKG 133
             +A ITL+RP+A NA N  M  +  +     E+D  V+ +++ G+G   F AG D+  
Sbjct: 12  GRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGK-HFSAGHDLGS 69

Length = 288

>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score = 51.8 bits (125), Expect = 4e-07
 Identities = 55/205 (26%), Positives = 86/205 (41%), Gaps = 45/205 (21%)

Query: 71  NVHPNGVAVITLDRP-KALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGM 129
           NV  + +AVIT+D P + +N +  +   + ++ L +   D  +K V+     P  F AG 
Sbjct: 10  NVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGA 69

Query: 130 DIKGVVAEIQKDRNTPLVPKVFTAE---------YSLICKISEYKKPYISLMDGVTMGFG 180
           DI  ++A  +            TA+           L  +I     P ++ + G  +G G
Sbjct: 70  DIN-MLAACK------------TAQEAEALARQGQQLFAEIEALPIPVVAAIHGACLGGG 116

Query: 181 IGISGHGRYRIVT--EKTLLAMPENGIGLFPDVGFSYIAAKGPGGG-------SVGAYLG 231
           + ++    YR+ T   KT+L +PE  +GL P          G GG         V   L 
Sbjct: 117 LELALACHYRVCTDDPKTVLGLPEVQLGLLP----------GSGGTQRLPRLIGVSTALD 166

Query: 232 M--TGKRISTPSDALFAGLGTDYVP 254
           M  TGK++     AL  GL  D VP
Sbjct: 167 MILTGKQLR-AKQALKLGLVDDVVP 190

Length = 708

>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 44/199 (22%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
            GVA I L+RP   NA+N  +    ++         R   V++ G G   FCAG+D+   
Sbjct: 10  GGVATIGLNRPAKRNALNDGLIAALRAAFARLPEGVR--AVVLHGEGDH-FCAGLDL--- 63

Query: 135 VAEIQKDRNTPLV------PKVF-TAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHG 187
            +E+++      +       +VF   +Y  +        P I+ + G  +G G+ ++   
Sbjct: 64  -SELRERDAGEGMHHSRRWHRVFDKIQYGRV--------PVIAALHGAVVGGGLELASAA 114

Query: 188 RYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV------GAY----LGMTGKRI 237
             R+  E T  A+PE   G+F  VG         GGGSV      G      + +TG R+
Sbjct: 115 HIRVADESTYFALPEGQRGIF--VG---------GGGSVRVPRLIGVARMTDMMLTG-RV 162

Query: 238 STPSDALFAGLGTDYVPSG 256
               +    GL    VP+G
Sbjct: 163 YDAQEGERLGLAQYLVPAG 181

Length = 255

>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional

 Score = 50.1 bits (120), Expect = 6e-07
 Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 25/147 (17%)

Query: 75  NGVAVITLDRPKALNAMNL----DMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMD 130
             +  ITLDRPKA NA++      M   + +F D    DP ++  +I G+G + F AG D
Sbjct: 11  GSILEITLDRPKA-NAIDAKTSFAMGEVFLNFRD----DPELRVAIITGAGEKFFSAGWD 65

Query: 131 IKGVVAEIQKDRNTPLVPKVFTAEYSL-----ICKISEYKKPYISLMDGVTMGFGIGISG 185
           +K        D           A++       + +I +  KP I+ ++G   G G  ++ 
Sbjct: 66  LKAAAEGEAPD-----------ADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELAL 114

Query: 186 HGRYRIVTEKTLLAMPENGIGLFPDVG 212
              + +  +    A+PE  +G+ PD G
Sbjct: 115 AADFIVCADNASFALPEAKLGIVPDSG 141

Length = 261

>gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional

 Score = 49.8 bits (119), Expect = 7e-07
 Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 10/176 (5%)

Query: 73  HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
           HP GV VI  +RP+  NA+   M       L   ++D  ++  +  G+    F AG D++
Sbjct: 13  HP-GVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGT-EGCFSAGNDMQ 70

Query: 133 GVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
             +A      +     ++     +L    +E +KP +S +DG+ +G G  I  H      
Sbjct: 71  DFLAAAMGGTS--FGSEILDFLIAL----AEAEKPIVSGVDGLAIGIGTTIHLHCDLTFA 124

Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGL 248
           + ++L   P   + L P+ G S +A +  G     A L + G+  S    A  AGL
Sbjct: 125 SPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLAL-GEGFSA-EAAQEAGL 178

Length = 251

>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 47/168 (27%), Positives = 74/168 (44%), Gaps = 14/168 (8%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
              V+TL  P A NA++ DM       L+  E DP ++ V++ G+G   FCAG ++    
Sbjct: 12  STLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAG-GFFCAGGNLNR-- 68

Query: 136 AEIQKDRNTPLVPKVFTAE----YSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRI 191
             + ++R  P  P V  A     +  I  I  + KP I+ ++G   G G  ++      +
Sbjct: 69  --LLENRAKP--PSVQAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLV 124

Query: 192 VTEKTLLAMPENGIGLFPDVGFSYIAAKG-PGGGSVGAYLGMTGKRIS 238
                   M    +GL PD G S+  A+  P    +   L + GK IS
Sbjct: 125 AARDAKFVMAYVKVGLTPDGGGSWFLARALP--RQLATELLLEGKPIS 170

Length = 260

>gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKG 133
           VA ITL+RP+ LN +   M  + ++ +   E D  +K +++ G+G RAF  G D  G
Sbjct: 15  VATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAG-RAFSGGYDFGG 70

Length = 298

>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 7/138 (5%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           GVA +TLD P   NA++  +  +    L    +DP V+ V++  +G   FCAG D+    
Sbjct: 15  GVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTG-GTFCAGADLS--- 70

Query: 136 AEIQKDRNTPLVPKVFTAE--YSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
            E       P    V  A    +L+  I E  KP I+ +DG     G G+ G     +  
Sbjct: 71  -EAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAG 129

Query: 194 EKTLLAMPENGIGLFPDV 211
            ++  A+ E  IG+ P +
Sbjct: 130 PESTFALTEARIGVAPAI 147

Length = 260

>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 10/141 (7%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVA ITL+RP+  N +  +   + +    E      VK V++ G+G   FC+G D+  +
Sbjct: 25  DGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAG-GNFCSGGDVHEI 83

Query: 135 VAEIQKDRNTPLVPKVFT-AEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
           +  + K     L+   FT     L+  +    +P I+ +DGV  G G  ++     R+ T
Sbjct: 84  IGPLTKMDMPELL--AFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGT 141

Query: 194 EKTLLAMPENGIGLFPDVGFS 214
                A       LF  VG +
Sbjct: 142 PSAKTAF------LFTRVGLA 156

Length = 277

>gnl|CDD|235938 PRK07112, PRK07112, polyketide biosynthesis enoyl-CoA hydratase; Validated

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 8/135 (5%)

Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
            V  + L RP+A N +N  +  +    LD  E       V++EG  P  FC G D   + 
Sbjct: 13  DVCFLQLHRPEAQNTINDRLIAECMDVLDRCEHA--ATIVVLEGL-PEVFCFGADFSAIA 69

Query: 136 AEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDG-VTMGFGIGISGHGRYRIVTE 194
            +    R   +  +     Y L  +++      I+ + G V  G GIG        I  E
Sbjct: 70  EKPDAGRADLIDAEPL---YDLWHRLATGPYVTIAHVRGKVNAG-GIGFVAASDIVIADE 125

Query: 195 KTLLAMPENGIGLFP 209
               ++ E   GL P
Sbjct: 126 TAPFSLSELLFGLIP 140

Length = 255

>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 76  GVAVITLDRPKALNAM--NLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
            +  +T++RP+  NA+  N  +D    +      +D  V+ V++ G+G  AF +G ++K
Sbjct: 12  HIVTLTMNRPETRNALSDNDAVD-ALVAACAAINADRSVRAVILTGAGT-AFSSGGNVK 68

Length = 266

>gnl|CDD|215635 PLN03214, PLN03214, probable enoyl-CoA hydratase/isomerase; Provisional

 Score = 44.5 bits (105), Expect = 5e-05
 Identities = 55/222 (24%), Positives = 89/222 (40%), Gaps = 28/222 (12%)

Query: 57  ATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVL 116
              +  GA   V+ +  P G+AV+ L + + +N+M L M       L   E+DP V+ V 
Sbjct: 2   PAPSPPGATPGVRVDRRPGGIAVVWLAK-EPVNSMTLAMWRSLDDALTALENDPTVRGV- 59

Query: 117 IEGSGPR--AFCAGMDIKGVVA---------EIQKDRNTPLVPKVFTAEYSLICKISEYK 165
           +  SG R   F AG DI  + A         E    + T LV ++  +  + +C I    
Sbjct: 60  VFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLV-RLLRSRLATVCAIR--- 115

Query: 166 KPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS 225
                   G     G  +S    YR+ T +  + + E  +G+ P   F      G     
Sbjct: 116 --------GACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGI-PVPKFWARLFMGRVIDR 166

Query: 226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLA 267
             A   +   R+  P++A   GL  + VP+  L  ++ A  A
Sbjct: 167 KVAESLLLRGRLVRPAEAKQLGLIDEVVPAAAL--MEAAASA 206

Length = 278

>gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid synthetase)

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 8/110 (7%)

Query: 73  HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMD-- 130
             +G+A IT++RP+  NA       +    LD+   DP +  V++ G+G +AFC+G D  
Sbjct: 9   STDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQK 68

Query: 131 IKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFG 180
           ++G    I        V ++   +      I    KP I++++G  +G G
Sbjct: 69  VRGDYGYIDDSG----VHRLNVLDVQRQ--IRTCPKPVIAMVNGYAIGGG 112

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 259

>gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           V  I L RP+  NA+N ++  + +  + +   D   + +++ G G   FCAG D+ G V
Sbjct: 10  VLTIELQRPERRNALNAELCEELREAVRK-AVDESARAIVLTGQGT-VFCAGADLSGDV 66

Length = 243

>gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 73  HPNGVAVITLDRPKALNAMN-LDMDIKYKSFLDEWESDPRVKCVLIEGS--GPRAFCAGM 129
             +G+A IT++RP+  NA     +D    +F D  + DP V  +L+ G+  G +AFC+G 
Sbjct: 25  SVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARD-DPNVGVILLTGNGDGDKAFCSGG 83

Query: 130 DIK 132
           D K
Sbjct: 84  DQK 86

Length = 282

>gnl|CDD|180958 PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 8/62 (12%)

Query: 75  NGVAVITLDRPKALNA----MNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMD 130
           +G+A IT++RP+  NA       +M     +F D  + D  +  +++ G+G +AFC+G D
Sbjct: 21  DGIAKITINRPEVRNAFRPKTVKEM---IDAFADARD-DDNIGVIILTGAGDKAFCSGGD 76

Query: 131 IK 132
            K
Sbjct: 77  QK 78

Length = 273

>gnl|CDD|181386 PRK08321, PRK08321, naphthoate synthase; Validated

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 10/69 (14%)

Query: 74  PNGVAVITLDRPKALNAMNLD-MDIKYKSFLDEWESDPRVKCVLIEGSGP------RAFC 126
             G   I  DRP+  NA     +D  Y++ LD     P V CVL+ G+GP       AFC
Sbjct: 32  DQGTVRIAFDRPEVRNAFRPHTVDELYRA-LDHARMSPDVGCVLLTGNGPSPKDGGWAFC 90

Query: 127 AGMD--IKG 133
           +G D  I+G
Sbjct: 91  SGGDQRIRG 99

Length = 302

>gnl|CDD|235744 PRK06213, PRK06213, enoyl-CoA hydratase; Provisional

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 41/147 (27%), Positives = 60/147 (40%), Gaps = 24/147 (16%)

Query: 73  HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
             +GVA ITLD  K  NA++  M     + LD+ E D     V+I G  P  F  G D+K
Sbjct: 9   LEDGVATITLDDGKV-NALSPAMIDALNAALDQAEDD--RAVVVITGQ-PGIFSGGFDLK 64

Query: 133 GVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDG--VTMG--------FGIG 182
            + +  Q      L+    T    L+     + KP I    G  +  G        + IG
Sbjct: 65  VMTSGAQAAIA--LLTAGSTLARRLL----SHPKPVIVACTGHAIAKGAFLLLSADYRIG 118

Query: 183 ISGHGRYRIVTEKTL--LAMPENGIGL 207
           +  HG ++I   +    + MP   I L
Sbjct: 119 V--HGPFKIGLNEVAIGMTMPHAAIEL 143

Length = 229

>gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V +I LDRP   NA +  M       L E+E+D  ++  ++   G   F AG+D+  V  
Sbjct: 9   VLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEH-FTAGLDLADVAP 67

Query: 137 EIQK 140
           ++  
Sbjct: 68  KLAA 71

Length = 255

>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 3/138 (2%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A +  D P ++N  +          LD  ++   +K V++  SG  AF  G DI   
Sbjct: 15  DGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILT-SGKDAFIVGADITEF 73

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
           +       +  L+  +  A  S+  K+ +   P ++ ++G+ +G G        +RI  +
Sbjct: 74  LGLFALP-DAELIQWLLFAN-SIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADD 131

Query: 195 KTLLAMPENGIGLFPDVG 212
              + +PE  +G+ P  G
Sbjct: 132 TAKIGLPETKLGIMPGFG 149

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714

>gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 17/57 (29%), Positives = 30/57 (52%)

Query: 74  PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMD 130
             G+A IT++RP+  NA       + +   ++   D  V  +++ G G +AFC+G D
Sbjct: 74  GEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGD 130

Length = 327

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	405
KOG1684	401	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	100.0
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	100.0
PRK05980	260	enoyl-CoA hydratase; Provisional	100.0
KOG1680	290	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PRK06127	269	enoyl-CoA hydratase; Provisional	100.0
PRK06143	256	enoyl-CoA hydratase; Provisional	100.0
PRK07657	260	enoyl-CoA hydratase; Provisional	100.0
PRK09076	258	enoyl-CoA hydratase; Provisional	100.0
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	100.0
PRK05862	257	enoyl-CoA hydratase; Provisional	100.0
PLN02600	251	enoyl-CoA hydratase	100.0
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	100.0
PRK06142	272	enoyl-CoA hydratase; Provisional	100.0
PRK08138	261	enoyl-CoA hydratase; Provisional	100.0
PRK08150	255	enoyl-CoA hydratase; Provisional	100.0
PRK06494	259	enoyl-CoA hydratase; Provisional	100.0
PRK07468	262	enoyl-CoA hydratase; Provisional	100.0
PRK06144	262	enoyl-CoA hydratase; Provisional	100.0
PRK08139	266	enoyl-CoA hydratase; Validated	100.0
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	100.0
PRK05995	262	enoyl-CoA hydratase; Provisional	100.0
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	100.0
PRK07327	268	enoyl-CoA hydratase; Provisional	100.0
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	100.0
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	100.0
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	100.0
PRK07799	263	enoyl-CoA hydratase; Provisional	100.0
PRK08140	262	enoyl-CoA hydratase; Provisional	100.0
PRK06563	255	enoyl-CoA hydratase; Provisional	100.0
PRK09245	266	enoyl-CoA hydratase; Provisional	100.0
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	100.0
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	100.0
PRK07260	255	enoyl-CoA hydratase; Provisional	100.0
PRK07658	257	enoyl-CoA hydratase; Provisional	100.0
PRK07511	260	enoyl-CoA hydratase; Provisional	100.0
PRK08252	254	enoyl-CoA hydratase; Provisional	100.0
PRK08258	277	enoyl-CoA hydratase; Provisional	100.0
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	100.0
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	100.0
PRK05981	266	enoyl-CoA hydratase; Provisional	100.0
PRK08260	296	enoyl-CoA hydratase; Provisional	100.0
PRK07659	260	enoyl-CoA hydratase; Provisional	100.0
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	100.0
PRK06210	272	enoyl-CoA hydratase; Provisional	100.0
PRK06023	251	enoyl-CoA hydratase; Provisional	100.0
PLN02888	265	enoyl-CoA hydratase	100.0
PRK05864	276	enoyl-CoA hydratase; Provisional	100.0
PRK05870	249	enoyl-CoA hydratase; Provisional	100.0
PRK06688	259	enoyl-CoA hydratase; Provisional	100.0
PLN02921	327	naphthoate synthase	100.0
PRK07509	262	enoyl-CoA hydratase; Provisional	100.0
PRK08259	254	enoyl-CoA hydratase; Provisional	100.0
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	100.0
PRK06190	258	enoyl-CoA hydratase; Provisional	100.0
PRK06495	257	enoyl-CoA hydratase; Provisional	100.0
PRK07938	249	enoyl-CoA hydratase; Provisional	100.0
PRK07854	243	enoyl-CoA hydratase; Provisional	100.0
PRK06072	248	enoyl-CoA hydratase; Provisional	100.0
PRK07827	260	enoyl-CoA hydratase; Provisional	100.0
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	100.0
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	100.0
PRK08321	302	naphthoate synthase; Validated	100.0
PRK12478	298	enoyl-CoA hydratase; Provisional	100.0
PRK05869	222	enoyl-CoA hydratase; Validated	100.0
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK08788	287	enoyl-CoA hydratase; Validated	100.0
PRK08290	288	enoyl-CoA hydratase; Provisional	100.0
KOG1679	291	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
PRK11730	715	fadB multifunctional fatty acid oxidation complex	100.0
PRK08272	302	enoyl-CoA hydratase; Provisional	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
PRK06213	229	enoyl-CoA hydratase; Provisional	100.0
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	100.0
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	100.0
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	100.0
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	100.0
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	100.0
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	100.0
KOG1681	292	consensus Enoyl-CoA isomerase [Lipid transport and	100.0
COG0447	282	MenB Dihydroxynaphthoic acid synthase [Coenzyme me	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
KOG0016	266	consensus Enoyl-CoA hydratase/isomerase [Lipid tra	100.0
KOG1682	287	consensus Enoyl-CoA isomerase [Lipid transport and	100.0
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	99.78
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.75
PF13766	118	ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PD	99.73
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	99.62
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	99.48
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	99.47
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.45
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.39
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	99.37
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	99.32
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	99.14
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	99.1
KOG1683	380	consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA	98.64
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	98.45
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	98.42
PRK10949	618	protease 4; Provisional	98.39
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	98.29
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	98.17
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	98.13
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	98.11
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	98.05
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	98.03
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	98.02
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	97.97
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	97.9
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	97.84
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	97.81
PRK11778	330	putative inner membrane peptidase; Provisional	97.78
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	97.72
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	97.69
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	97.69
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	97.65
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	97.4
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	97.37
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	97.34
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	97.28
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	97.25
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	97.22
TIGR00515	285	accD acetyl-CoA carboxylase, carboxyl transferase,	97.17
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	97.13
PRK05654	292	acetyl-CoA carboxylase subunit beta; Validated	97.08
PF01343	154	Peptidase_S49: Peptidase family S49 peptidase clas	97.04
CHL00174	296	accD acetyl-CoA carboxylase beta subunit; Reviewed	96.75
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	96.55
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	96.48
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	96.43
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	96.3
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	96.0
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	95.72
COG0825	317	AccA Acetyl-CoA carboxylase alpha subunit [Lipid m	95.34
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	95.29
PRK10949	618	protease 4; Provisional	95.05
COG0777	294	AccD Acetyl-CoA carboxylase beta subunit [Lipid me	95.04
COG4799	526	Acetyl-CoA carboxylase, carboxyltransferase compon	92.37
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	89.45
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	89.2
PF02601	319	Exonuc_VII_L: Exonuclease VII, large subunit; Inte	80.43

>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=2.4e-74  Score=550.07  Aligned_cols=331  Identities=49%  Similarity=0.777  Sum_probs=294.7

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      .+.|.++. ++..++||||||+++||||.+|+..+...|..|+.++.+++||+.|+|+|+||||||++...... .+...
T Consensus        37 ~~~VL~e~-~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~-~d~~~  114 (401)
T KOG1684|consen   37 KDQVLVEG-KGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESI-KDKET  114 (401)
T ss_pred             CCceEEec-CCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHh-hcCCc
Confidence            45688876 68899999999999999999999999999999999999999999999999999999999777654 34455


Q ss_pred             CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                      +....||+.+|.+++.|++|.||+||.+||++||||+||+++..||||||++.|+|||+.||+|||+|++|+|+|++|  
T Consensus       115 ~~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg--  192 (401)
T KOG1684|consen  115 PEVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG--  192 (401)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc--
Confidence            678899999999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHHhcCCCCC-cchhhhhHHHHH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEG-EAPLKLLLPQIT  303 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~l~~~~~~i~  303 (405)
                      .+|.||+|||.+++ +.||+..||++|+||++++..+.++|. ..+..+|...|.+.|.+|...+.. ...+....+.|+
T Consensus       193 ~lg~YLgLTG~rl~-GaD~~~~GlATHyv~S~~l~~Lee~L~-~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~  270 (401)
T KOG1684|consen  193 YLGLYLGLTGQRLS-GADALRCGLATHYVPSEKLPSLEERLL-KNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVIN  270 (401)
T ss_pred             HHHHhhhhccceec-chHHHHhcchhhccchhhhhHHHHHHh-hhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHH
Confidence            59999999999999 799999999999999999999999998 457888888999999999876433 334456788999


Q ss_pred             HHcCCcccHHHHHHHHHhccCCccchhhHHHHHHHHHHhccCCchHHHHHHHHHHHhhhh----cCCcc----------C
Q 015541          304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH----GKTDN----------E  369 (405)
Q Consensus       304 ~~f~~~~~ve~i~~~Le~~~~~~~~~~~~wa~~~l~~l~~~SP~sl~vt~~~~~~~~~~~----~~~e~----------~  369 (405)
                      +||+.+ ++|||++.|++..++.  ++.+||+++++.|.++||+||+||+++++.++...    ..+|+          |
T Consensus       271 ~~Fs~~-tVeeIie~lk~~q~~~--~~~ewak~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~Eyr~s~~~~~~~D  347 (401)
T KOG1684|consen  271 KCFSAN-TVEEIIEALKNYQQSA--DGSEWAKETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCLTMEYRLSLRMLMRGD  347 (401)
T ss_pred             Hhhccc-cHHHHHHHHHHHhhhh--hHHHHHHHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccc
Confidence            999888 9999999987766422  24899999999999999999999999999877542    12333          3


Q ss_pred             Ccc-----------CCCCCCCCcCCCCHHHHHhhccCCCCCCCCccC
Q 015541          370 LSK-----------NPKWNPASLEEVNQSEVEALFEPLGTGVEELKV  405 (405)
Q Consensus       370 ~~~-----------~P~W~~~sl~~V~~~~v~~~f~~~~~~~~~l~~  405 (405)
                      |.+           +|||+|.+++||++++|+.||.|++. ..+|++
T Consensus       348 F~EGvRA~LIDKd~~PKW~p~~l~~V~e~~Vdn~F~~~p~-~~eLkl  393 (401)
T KOG1684|consen  348 FCEGVRAVLIDKDQNPKWDPASLADVTEDEVDNYFKPLPS-KSELKL  393 (401)
T ss_pred             hhhhhhheeecCCcCCCCCCcchhhcCHHHHHHhccCCCC-cccccC
Confidence            333           99999999999999999999999776 677764

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=1.5e-68  Score=536.77  Aligned_cols=330  Identities=32%  Similarity=0.568  Sum_probs=278.4

Q ss_pred             CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCC
Q 015541           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (405)
Q Consensus        64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (405)
                      .++.|.++. .+++++||||||+++||||.+|+.+|.++++.|+.|++|++|||+|+| ++||+|+|++++...... ..
T Consensus        40 ~~~~v~~e~-~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~G-kaFcAGgDl~~l~~~~~~-~~  116 (407)
T PLN02851         40 LQDQVLVEG-RAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSG-RAFCSGADVVSLYHLINE-GN  116 (407)
T ss_pred             CCCCeEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccCCcCHHHHHhhccc-cc
Confidence            345677877 689999999999999999999999999999999999999999999998 899999999998763211 11


Q ss_pred             CCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (405)
Q Consensus       144 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~  223 (405)
                      ......||..+|.+++.|.++|||+||+|||+|||||++|+++||||||+++++|+|||++||++|++|++|+|+|++| 
T Consensus       117 ~~~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g-  195 (407)
T PLN02851        117 VEECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPG-  195 (407)
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcC-
Confidence            2345668899999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHHhcCCC-CCcchhhhhHHHH
Q 015541          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDP-EGEAPLKLLLPQI  302 (405)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~l~~~~~~i  302 (405)
                       ..|+||+|||++++ |+||+++||||++||++++....+.+.+.  ...+...+..++++|.... .....+...+..|
T Consensus       196 -~~g~~L~LTG~~i~-a~eA~~~GLa~~~v~~~~l~~l~~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I  271 (407)
T PLN02851        196 -YLGEYLALTGQKLN-GVEMIACGLATHYCLNARLPLIEERLGKL--LTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETI  271 (407)
T ss_pred             -HHHHHHHHhCCcCC-HHHHHHCCCceeecCHhhHHHHHHHHHhh--ccCCHHHHHHHHHHhccccCCCcccHHHHHHHH
Confidence             47999999999999 99999999999999999996655555433  2334456888899986431 2223455568899


Q ss_pred             HHHcCCcccHHHHHHHHHhccCCccchhhHHHHHHHHHHhccCCchHHHHHHHHHHHhhhh----cCCc-----------
Q 015541          303 TSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH----GKTD-----------  367 (405)
Q Consensus       303 ~~~f~~~~~ve~i~~~Le~~~~~~~~~~~~wa~~~l~~l~~~SP~sl~vt~~~~~~~~~~~----~~~e-----------  367 (405)
                      ++||+.+ ++++|++.|+.....   ...+|++++++.|+++||+|++|||+++++++...    ..+|           
T Consensus       272 ~~~F~~~-sv~~I~~~L~~~~~~---~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~  347 (407)
T PLN02851        272 DKCFGHD-TVEEIIEALENEAAS---SYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKW  347 (407)
T ss_pred             HHHhCCC-CHHHHHHHHHhcccc---cchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Confidence            9999988 999999999975210   01589999999999999999999999999988531    1122           


Q ss_pred             --cCCcc-----------CCCCCCCCcCCCCHHHHHhhccCCCCCCCCccC
Q 015541          368 --NELSK-----------NPKWNPASLEEVNQSEVEALFEPLGTGVEELKV  405 (405)
Q Consensus       368 --~~~~~-----------~P~W~~~sl~~V~~~~v~~~f~~~~~~~~~l~~  405 (405)
                        .||.+           +|+|+|+|++||++++|++||.|++.++.+|++
T Consensus       348 ~~~DF~EGVRA~LIDKd~~P~W~p~sl~~V~~~~v~~~f~~~~~~~~~l~~  398 (407)
T PLN02851        348 VSGDFCEGVRARLVDKDFAPKWDPPSLGEVSKDMVDCYFTPLDESESELEL  398 (407)
T ss_pred             ccchHHHHHHHHhcCCCCCCCCCCCChhhCCHHHHHHHhCCCCCCcccccC
Confidence              24443           999999999999999999999999764446764

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=3.5e-68  Score=534.27  Aligned_cols=329  Identities=29%  Similarity=0.530  Sum_probs=273.2

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      ++.|.++. +++|++||||||+++||||.+|+.+|.++++.|+.|++|++|||+|+| ++||+|+||+++...... ...
T Consensus        36 ~~~V~~e~-~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~G-kaFcAGgDl~~l~~~~~~-~~~  112 (401)
T PLN02157         36 DYQVLVEG-SGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSG-RAFCAGGDIVSLYHLRKR-GSP  112 (401)
T ss_pred             CCceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCC-CCccCCcCHHHHHhhccc-cch
Confidence            45577876 689999999999999999999999999999999999999999999998 899999999998753211 111


Q ss_pred             CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                      .....+|..+|.+++.|+++|||+||+|||+|||||++|+++||||||+++++|+|||+++|++|++|++++|+|++|  
T Consensus       113 ~~~~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G--  190 (401)
T PLN02157        113 DAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPG--  190 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhh--
Confidence            223467888888999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHHhcCCC-CCcchhhhhHHHHH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDP-EGEAPLKLLLPQIT  303 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~l~~~~~~i~  303 (405)
                      ..++||+|||++++ |+||+++||||++||++++. .+.+++..... .+...+..+++.+.... .....+..+.+.|.
T Consensus       191 ~~a~~L~LTG~~i~-A~eA~~~GLv~~vVp~~~l~-~~~~~~~~i~~-~~p~av~~~k~~~~~~~~~~~~~l~~~~~~i~  267 (401)
T PLN02157        191 RLGEYLGLTGLKLS-GAEMLACGLATHYIRSEEIP-VMEEQLKKLLT-DDPSVVESCLEKCAEVAHPEKTGVIRRIDLLE  267 (401)
T ss_pred             HHHHHHHHcCCcCC-HHHHHHcCCceEEeCHhHHH-HHHHHHHHHHc-CCHHHHHHHHHHHhcccCCcchhHHHHHHHHH
Confidence            37999999999999 99999999999999999985 44566665433 34456666666664331 12234555678899


Q ss_pred             HHcCCcccHHHHHHHHHhccCCccchhhHHHHHHHHHHhccCCchHHHHHHHHHHHhhhh----cCC-------------
Q 015541          304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH----GKT-------------  366 (405)
Q Consensus       304 ~~f~~~~~ve~i~~~Le~~~~~~~~~~~~wa~~~l~~l~~~SP~sl~vt~~~~~~~~~~~----~~~-------------  366 (405)
                      .||+++ ++++|++.|+...+.   ..++|++++++.|+++||+|++|||+++++++...    ..+             
T Consensus       268 ~~f~~~-d~~ei~~al~~~~~k---r~~~wa~~~~~~l~~~sP~Sl~vt~~~~~~~~~~~l~e~~~~e~~~~~~~~~~~~  343 (401)
T PLN02157        268 KCFSHD-TVEEIIDSLEIEAGR---RKDTWCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIREYRMSLQGLIGPM  343 (401)
T ss_pred             HHhcCC-CHHHHHHHHHhhhcc---cchHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCC
Confidence            999988 999999999653110   01789999999999999999999999999988531    111             


Q ss_pred             ccCCcc-----------CCCCCCCCcCCCCHHHHHhhccCCCCCCCCccC
Q 015541          367 DNELSK-----------NPKWNPASLEEVNQSEVEALFEPLGTGVEELKV  405 (405)
Q Consensus       367 e~~~~~-----------~P~W~~~sl~~V~~~~v~~~f~~~~~~~~~l~~  405 (405)
                      ..||.+           +|+|+|+|++||++++|++||.|+++++.+|++
T Consensus       344 ~~DF~EGVRA~LiDKd~~P~W~p~~l~~V~~~~v~~~f~~~~~~~~~l~~  393 (401)
T PLN02157        344 SGNFCEGVRARLIDKDEAPKWDPPSLEKVSEDMVDDYFCALTPTEPDLDL  393 (401)
T ss_pred             CchHHHHHHHHHcCCCCCCCCCCCChhhCCHHHHHHHhCCCCCCcccccc
Confidence            134543           999999999999999999999999743445654

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=100.00  E-value=5.2e-68  Score=531.23  Aligned_cols=328  Identities=36%  Similarity=0.625  Sum_probs=275.7

Q ss_pred             ccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCC
Q 015541           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (405)
Q Consensus        66 ~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (405)
                      +.|.++. +++|++||||||+++|+||.+|+.+|.++|+.|+.|++|++|||+|+| ++||+|+|++++...... ....
T Consensus         9 ~~v~~~~-~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G-~~FcAGgDl~~l~~~~~~-~~~~   85 (381)
T PLN02988          9 SQVLVEE-KSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHG-RAFCAGGDVAAVVRDIEQ-GNWR   85 (381)
T ss_pred             CceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCC-CCcccCcCHHHHHhhhcc-cchh
Confidence            3477776 689999999999999999999999999999999999999999999998 899999999998642211 1112


Q ss_pred             chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHH
Q 015541          146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  225 (405)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~  225 (405)
                      ....||..+|.+++.|.++|||+||+|||+|||||++|+++||||||+++++|+|||+++|++|++|++++|+|++|  .
T Consensus        86 ~~~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G--~  163 (381)
T PLN02988         86 LGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPG--F  163 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHH--H
Confidence            23457888888889999999999999999999999999999999999999999999999999999999999999999  4


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHHhcCCCC-CcchhhhhHHHHHH
Q 015541          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPE-GEAPLKLLLPQITS  304 (405)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~l~~~~~~i~~  304 (405)
                      .++||+|||++++ |+||+++||||++||++++.+.+.+++..  ...+...+..+++.+...+. ....+...+..|++
T Consensus       164 ~~~~l~LTG~~i~-a~eA~~~GLv~~vv~~~~l~~~~~~la~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~  240 (381)
T PLN02988        164 FGEYVGLTGARLD-GAEMLACGLATHFVPSTRLTALEADLCRI--GSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDR  240 (381)
T ss_pred             HHHHHHHcCCCCC-HHHHHHcCCceEecCHhHHHHHHHHHHHh--hccCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH
Confidence            7999999999999 99999999999999999999999998832  33444457777777764431 12234446889999


Q ss_pred             HcCCcccHHHHHHHHHhccCCccchhhHHHHHHHHHHhccCCchHHHHHHHHHHHhhhh----cC----------C---c
Q 015541          305 CFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH----GK----------T---D  367 (405)
Q Consensus       305 ~f~~~~~ve~i~~~Le~~~~~~~~~~~~wa~~~l~~l~~~SP~sl~vt~~~~~~~~~~~----~~----------~---e  367 (405)
                      ||+.+ ++++|++.|++.... +  ..+|++++++.|+++||+|++|||+++++++...    ..          .   .
T Consensus       241 ~f~~~-~~~~i~~~L~~~~~~-~--~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~  316 (381)
T PLN02988        241 CFSRR-TVEEIISALEREATQ-E--ADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEIS  316 (381)
T ss_pred             HhCCC-CHHHHHHHHHhhccc-c--ccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCC
Confidence            99988 999999999974210 0  1589999999999999999999999999987531    11          1   2


Q ss_pred             cCCcc-----------CCCCCCCCcCCCCHHHHHhhccCCCCCCC--CccC
Q 015541          368 NELSK-----------NPKWNPASLEEVNQSEVEALFEPLGTGVE--ELKV  405 (405)
Q Consensus       368 ~~~~~-----------~P~W~~~sl~~V~~~~v~~~f~~~~~~~~--~l~~  405 (405)
                      .||.+           +|+|+|+|++||++++|++||.|++.+++  +|++
T Consensus       317 ~DF~EGVRA~LiDKd~~P~W~p~~l~~v~~~~v~~~f~~~~~~~~~~~l~~  367 (381)
T PLN02988        317 KDFVEGCRAILVDKDKNPKWEPRRLEDMKDSMVEQYFERVEEEEEWDDLKL  367 (381)
T ss_pred             chHHHhHHHHhcCCCCCCCCCCCChhhCCHHHHHHHhCCCCccccccccCC
Confidence            45554           89999999999999999999999876332  5764

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=2.2e-59  Score=470.39  Aligned_cols=328  Identities=34%  Similarity=0.605  Sum_probs=270.3

Q ss_pred             CCCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCC
Q 015541           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (405)
Q Consensus        63 ~~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (405)
                      ++++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||+|+| ++||+|+|++++....   .
T Consensus         8 ~~~~~v~~~~-~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g-~~FcaG~Dl~~~~~~~---~   82 (379)
T PLN02874          8 PAEEVVLGEE-KGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAG-RAFSAGGDLKMFYDGR---E   82 (379)
T ss_pred             CCCCceEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CCccCccCHHHHHhhc---c
Confidence            3456688876 689999999999999999999999999999999999999999999997 8999999999876421   1


Q ss_pred             CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCC
Q 015541          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (405)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G  222 (405)
                      .......++...+.+...|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus        83 ~~~~~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g  162 (379)
T PLN02874         83 SDDSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPG  162 (379)
T ss_pred             cchHHHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhH
Confidence            11122345556667788999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHHhcCCC-CCcchhhhhHHH
Q 015541          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDP-EGEAPLKLLLPQ  301 (405)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~l~~~~~~  301 (405)
                        ..+++|+|||++++ |+||+++|||+++||++++.+.+.++.+.  ...+...++.+++.+.... .....+....+.
T Consensus       163 --~~a~~l~ltG~~i~-a~eA~~~GLv~~vv~~~~l~~~~~~l~~l--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  237 (379)
T PLN02874        163 --HLGEYLALTGARLN-GKEMVACGLATHFVPSEKLPELEKRLLNL--NSGDESAVQEAIEEFSKDVQADEDSILNKQSW  237 (379)
T ss_pred             --HHHHHHHHcCCccc-HHHHHHcCCccEEeCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHhhcccCCCcchhHHHHHH
Confidence              37999999999999 99999999999999999888766666543  3344567899998876432 223345556888


Q ss_pred             HHHHcCCcccHHHHHHHHHhccCCccchhhHHHHHHHHHHhccCCchHHHHHHHHHHHhhhh----cC----------C-
Q 015541          302 ITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH----GK----------T-  366 (405)
Q Consensus       302 i~~~f~~~~~ve~i~~~Le~~~~~~~~~~~~wa~~~l~~l~~~SP~sl~vt~~~~~~~~~~~----~~----------~-  366 (405)
                      |.+||+.+ ++++|++.|++...+ +.  .+|+.++++.|.++||+|+++|+++++++....    ..          . 
T Consensus       238 i~~~f~~~-~~~eii~al~~~~~~-~~--~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~  313 (379)
T PLN02874        238 INECFSKD-TVEEIIKAFESEASK-TG--NEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRS  313 (379)
T ss_pred             HHHHhCCC-CHHHHHHHHhhcccc-cc--cHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhc
Confidence            99999998 999999999875321 11  589999999999999999999999999764310    00          1 


Q ss_pred             --ccCCc-----------cCCCCCCCCcCCCCHHHHHhhccCCCCCCCCccC
Q 015541          367 --DNELS-----------KNPKWNPASLEEVNQSEVEALFEPLGTGVEELKV  405 (405)
Q Consensus       367 --e~~~~-----------~~P~W~~~sl~~V~~~~v~~~f~~~~~~~~~l~~  405 (405)
                        ..|+.           .+|+|+++|+++|++++|++||.|+.. +.||++
T Consensus       314 ~~~~D~~EGv~AflidK~r~P~w~~~~~~~v~~~~v~~~f~~~~~-~~~~~~  364 (379)
T PLN02874        314 TVSDDVYEGIRALVIDKDNAPKWNPSTLDEVTDEKVDLVFQPFKA-REELQL  364 (379)
T ss_pred             CcCcchhhccceEEEcCCCCCCCCCCChhhCCHHHHHHHhCCCCC-ccccCC
Confidence              11211           279999999999999999999999755 334553

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=100.00  E-value=4.5e-58  Score=455.60  Aligned_cols=314  Identities=41%  Similarity=0.725  Sum_probs=267.6

Q ss_pred             cEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCc
Q 015541           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (405)
Q Consensus        67 ~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (405)
                      .|.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.|+++||+|+|++++...... .....
T Consensus         4 ~v~~~~-~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~-~~~~~   81 (342)
T PRK05617          4 EVLAEV-EGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARA-GDPLA   81 (342)
T ss_pred             eEEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhcc-CCchh
Confidence            477776 6899999999999999999999999999999999999999999999987899999999998652211 11111


Q ss_pred             hHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHH
Q 015541          147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV  226 (405)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~  226 (405)
                      ...++...++++..|..+|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++| . .
T Consensus        82 ~~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~-~  159 (342)
T PRK05617         82 ADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-A-L  159 (342)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-H-H
Confidence            1245666677888999999999999999999999999999999999999999999999999999999999999987 4 8


Q ss_pred             HHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHc
Q 015541          227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCF  306 (405)
Q Consensus       227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~i~~~f  306 (405)
                      +++|+|||++++ |+||+++|||+++||++++.+..++++...+ .+..+.++.++.++....+ ...+......|++||
T Consensus       160 a~~llltG~~i~-A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~  236 (342)
T PRK05617        160 GTYLALTGARIS-AADALYAGLADHFVPSADLPALLDALISLRW-DSGADVVDAALAAFATPAP-ASELAAQRAWIDECF  236 (342)
T ss_pred             HHHHHHcCCCCC-HHHHHHcCCcceecCHHHHHHHHHHHHhcCC-ccchhHHHHHHHHhccCCC-cchhHHHHHHHHHHh
Confidence            999999999999 9999999999999999988887777775533 3334567888888866533 457888899999999


Q ss_pred             CCcccHHHHHHHHHhccCCccchhhHHHHHHHHHHhccCCchHHHHHHHHHHHhhhh----------------cCC----
Q 015541          307 SSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH----------------GKT----  366 (405)
Q Consensus       307 ~~~~~ve~i~~~Le~~~~~~~~~~~~wa~~~l~~l~~~SP~sl~vt~~~~~~~~~~~----------------~~~----  366 (405)
                      +.. ++++|++.|++..       ++|+.++++.|.++||.+++.+++++++.....                ...    
T Consensus       237 ~~~-~~~~~~~~l~~~~-------~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~e  308 (342)
T PRK05617        237 AGD-TVEDIIAALEADG-------GEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSPDFVE  308 (342)
T ss_pred             CCC-CHHHHHHHHHhcc-------HHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCchhh
Confidence            987 9999999999886       789999999999999999999999998753210                000    


Q ss_pred             --ccCC---ccCCCCCCCCcCCCCHHHHHhhccC
Q 015541          367 --DNEL---SKNPKWNPASLEEVNQSEVEALFEP  395 (405)
Q Consensus       367 --e~~~---~~~P~W~~~sl~~V~~~~v~~~f~~  395 (405)
                        .-.+   .+.|+|+++|++||++++|++||+|
T Consensus       309 gv~afl~ek~r~p~~~~~~~~~~~~~~~~~~~~~  342 (342)
T PRK05617        309 GVRAVLIDKDRNPKWSPATLEDVTPEDVEAFFAP  342 (342)
T ss_pred             ccceEEEcCCCCCCCCCCChHhCCHHHHHHhhCC
Confidence              1112   1379999999999999999999997

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.6e-50  Score=382.67  Aligned_cols=252  Identities=25%  Similarity=0.331  Sum_probs=212.2

Q ss_pred             cEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCc
Q 015541           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (405)
Q Consensus        67 ~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (405)
                      .|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.|+++||+|+|++++..... ......
T Consensus         4 ~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~-~~~~~~   81 (260)
T PRK05980          4 TVLIEI-RDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVA-AGADVA   81 (260)
T ss_pred             eEEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhcc-ccchhh
Confidence            477776 699999999999999999999999999999999999999999999998789999999998754211 011112


Q ss_pred             hHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHH
Q 015541          147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV  226 (405)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~  226 (405)
                      ...++...+.++..|..+|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. .
T Consensus        82 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~-~  160 (260)
T PRK05980         82 LRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRK-R  160 (260)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHH-H
Confidence            345666666788899999999999999999999999999999999999999999999999999999999999999987 9


Q ss_pred             HHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHHH
Q 015541          227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQITS  304 (405)
Q Consensus       227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~~  304 (405)
                      +++|++||++++ |+||+++||||++||++++.+.+.+++.......|.  ..+|+.++..... .....+..+...+..
T Consensus       161 a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~~~~~~~~-~~~~~~~~e~~~~~~  238 (260)
T PRK05980        161 ALELLLTGDAFS-AERALEIGLVNAVVPHEELLPAARALARRIIRHSPVAVAAILTAVTRGLNL-SIAEGLLIESEQFAR  238 (260)
T ss_pred             HHHHHHcCCccC-HHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence            999999999999 999999999999999999999999998874444442  3345555443221 123345556677889


Q ss_pred             HcCCcccHHHHHHHHHhcc
Q 015541          305 CFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       305 ~f~~~~~ve~i~~~Le~~~  323 (405)
                      +|.+++..+++.++++++.
T Consensus       239 ~~~~~~~~e~~~af~~kr~  257 (260)
T PRK05980        239 MAGSADLREGLAAWIERRR  257 (260)
T ss_pred             HhcChhHHHHHHHHhccCC
Confidence            9999888999999999886

>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=1.8e-50  Score=375.78  Aligned_cols=253  Identities=23%  Similarity=0.327  Sum_probs=209.1

Q ss_pred             CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCC
Q 015541           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (405)
Q Consensus        64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (405)
                      .+..+.....+++|+.||||||+++|||+..|+.+|.+++..++.|+.+.++||||.| ++||+|+||+++......+. 
T Consensus        34 ~~~~~~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~g-ksFcsG~Dl~e~~~~~~~~~-  111 (290)
T KOG1680|consen   34 EPIKIELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSG-KSFCSGADLKEMKKDEFQDV-  111 (290)
T ss_pred             CcceeEEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCC-CccccccCHHHHhhcccccc-
Confidence            3334444445789999999999999999999999999999999999999999999997 99999999999876221111 


Q ss_pred             CCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (405)
Q Consensus       144 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~  223 (405)
                         ....|.   +....+.+.+||+||+|||+|+|||++|+++||+|||+++++|++||.++|++|.+|+|++|+|.+|.
T Consensus       112 ---~~~~~~---~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~  185 (290)
T KOG1680|consen  112 ---SDGIFL---RVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGK  185 (290)
T ss_pred             ---cccccc---chhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhCh
Confidence               111222   22334558999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHH---HHHHHHhcCCCCCcchhhhhHH
Q 015541          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDI---VALLAKYSSDPEGEAPLKLLLP  300 (405)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i---~~~l~~~~~~~~~~~~l~~~~~  300 (405)
                      + +|+++++||++++ |+||.++|||++|||.+++...+.+|+... .+.|+..+   |+.++.- .+......++.+..
T Consensus       186 s-~Ale~~ltg~~~~-AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~I-a~~~~~~v~~~K~svn~~-~e~~l~e~l~~e~~  261 (290)
T KOG1680|consen  186 S-RALEMILTGRRLG-AQEAKKIGLVNKVVPSGDALGEAVKLAEQI-AKNSPLVVRADKESVNAA-YETTLFEGLELERD  261 (290)
T ss_pred             H-HHHHHHHhcCccc-HHHHHhCCceeEeecchhHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHH-hhccHHHHHHhhhh
Confidence            7 9999999999999 999999999999999999999999999884 55555444   4444441 11222344566666


Q ss_pred             HHHHHcCCcccHHHHHHHHHhccCCccchhhHHHH
Q 015541          301 QITSCFSSEKSVRQIIEELKKHQSSAETSVAQWAD  335 (405)
Q Consensus       301 ~i~~~f~~~~~ve~i~~~Le~~~~~~~~~~~~wa~  335 (405)
                      .+...|..++..|++.++.++++       ++|.+
T Consensus       262 ~~~s~~~~~d~~Eg~~~f~~kr~-------~~~~k  289 (290)
T KOG1680|consen  262 LFGSTFATEDRLEGMTAFAEKRK-------PKFSK  289 (290)
T ss_pred             hhhhhhhhHHHHHHHHHhcccCC-------ccccc
Confidence            78888888889999999988887       67753

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.7e-49  Score=382.63  Aligned_cols=253  Identities=23%  Similarity=0.286  Sum_probs=215.2

Q ss_pred             CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCC
Q 015541           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (405)
Q Consensus        64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (405)
                      +.+.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|+++||+|+|++++....   ..
T Consensus         9 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~---~~   84 (269)
T PRK06127          9 PTGKLLAEK-TGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESR---SD   84 (269)
T ss_pred             CCCceEEEE-ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcc---cc
Confidence            456688887 68999999999999999999999999999999999999999999999878999999999875411   11


Q ss_pred             CCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (405)
Q Consensus       144 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~  223 (405)
                      ......++...+.++..|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.
T Consensus        85 ~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~  164 (269)
T PRK06127         85 AEAVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGP  164 (269)
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCH
Confidence            12233455666678889999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHH
Q 015541          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQ  301 (405)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~  301 (405)
                      . ++++|++||+.++ |+||+++||||++||++++.+.+.++++......|.  ..+|+.++..... .....++.+...
T Consensus       165 ~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~-~~~~~~~~e~~~  241 (269)
T PRK06127        165 S-AAKDLFYTARRFD-AAEALRIGLVHRVTAADDLETALADYAATIAGNAPLTLRAAKRAIAELLKD-EPERDMAACQAL  241 (269)
T ss_pred             H-HHHHHHHcCCCCC-HHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence            7 9999999999999 999999999999999999999999999875443333  3445555543221 223445566677


Q ss_pred             HHHHcCCcccHHHHHHHHHhcc
Q 015541          302 ITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       302 i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      +..+|.+++..|++.++++++.
T Consensus       242 ~~~~~~~~d~~e~~~af~ekr~  263 (269)
T PRK06127        242 VAACFDSEDYREGRAAFMEKRK  263 (269)
T ss_pred             HHHHhcChHHHHHHHHHhcCCC
Confidence            8899999888999999999887

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3e-49  Score=378.29  Aligned_cols=249  Identities=21%  Similarity=0.322  Sum_probs=211.2

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      ++++.++..+++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.|+++||+|+|++++...     ..
T Consensus         5 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~-----~~   79 (256)
T PRK06143          5 NAHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATL-----DQ   79 (256)
T ss_pred             cccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhc-----Ch
Confidence            3457777667899999999999999999999999999999999999999999999987899999999987541     11


Q ss_pred             CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                      .....++.....++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|+ |++|++++|++++|..
T Consensus        80 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~  158 (256)
T PRK06143         80 ASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWA  158 (256)
T ss_pred             hhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHH
Confidence            223445566677888999999999999999999999999999999999999999999999998 8899999999999997


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQI  302 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i  302 (405)
                       .+++|++||+.++ |+||+++||||++||++++.+.+.+++.......|.  ..+|+.++.... ......+..+...+
T Consensus       159 -~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~l~~~~~~e~~~~  235 (256)
T PRK06143        159 -RTRWLLLTGETID-AAQALAWGLVDRVVPLAELDAAVERLAASLAGCGPQALRQQKRLLREWED-MPLDVAIDDSVAEF  235 (256)
T ss_pred             -HHHHHHHcCCcCC-HHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHH
Confidence             9999999999999 999999999999999999999999999885444443  445666655322 12233455566678


Q ss_pred             HHHcCCcccHHHHHHHHHhc
Q 015541          303 TSCFSSEKSVRQIIEELKKH  322 (405)
Q Consensus       303 ~~~f~~~~~ve~i~~~Le~~  322 (405)
                      ..+|.+++..|++.++++++
T Consensus       236 ~~~~~~~d~~e~~~af~ekr  255 (256)
T PRK06143        236 GAAFLTGEPQRHMAAFLNRK  255 (256)
T ss_pred             HHHhcChHHHHHHHHHHhhc
Confidence            88898887889999998876

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.3e-49  Score=379.00  Aligned_cols=249  Identities=21%  Similarity=0.300  Sum_probs=212.3

Q ss_pred             ccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCC
Q 015541           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (405)
Q Consensus        66 ~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (405)
                      +.|.+++.+++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.|+++||+|+|++++...     ...
T Consensus         3 ~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~-----~~~   77 (260)
T PRK07657          3 QNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGM-----NEE   77 (260)
T ss_pred             ceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcC-----Chh
Confidence            467787546899999999999999999999999999999999999999999999986799999999987531     112


Q ss_pred             chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHH
Q 015541          146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  225 (405)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~  225 (405)
                      ....++...+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.+ 
T Consensus        78 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~-  156 (260)
T PRK07657         78 QVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVG-  156 (260)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHH-
Confidence            2344556667788899999999999999999999999999999999999999999999999999999999999999987 


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHH---HHHHHHHhcCCCCCcchhhhhHHHH
Q 015541          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQD---IVALLAKYSSDPEGEAPLKLLLPQI  302 (405)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~---i~~~l~~~~~~~~~~~~l~~~~~~i  302 (405)
                      .+++|++||++++ |+||+++||||++||++++.+.+.+++++. ...|..+   +|..++.... ......+..+...+
T Consensus       157 ~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l-~~~~~~a~~~~K~~l~~~~~-~~~~~~~~~e~~~~  233 (260)
T PRK07657        157 RAKELIYTGRRIS-AQEAKEIGLVEFVVPAHLLEEKAIEIAEKI-ASNGPIAVRQAKEAISNGIQ-VDLHTGLQIEKQAY  233 (260)
T ss_pred             HHHHHHHhCCCCC-HHHHHHcCCCCeecCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHH
Confidence            9999999999999 999999999999999999999999999874 4444434   4555543211 11233455566678


Q ss_pred             HHHcCCcccHHHHHHHHHhcc
Q 015541          303 TSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       303 ~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ..++.+++..|++.++++++.
T Consensus       234 ~~~~~~~~~~e~~~af~~~r~  254 (260)
T PRK07657        234 EGTIPTKDRLEGLQAFKEKRK  254 (260)
T ss_pred             HHHhcCHhHHHHHHHHhcCCC
Confidence            888998889999999999886

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.4e-49  Score=377.06  Aligned_cols=246  Identities=23%  Similarity=0.293  Sum_probs=208.1

Q ss_pred             EEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCch
Q 015541           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (405)
Q Consensus        68 i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (405)
                      |.++. +++|++||||||++ |+||.+|+.+|.++++.++.|+++|+|||+|+|+++||+|+|++++...     .....
T Consensus         5 v~~~~-~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~-----~~~~~   77 (258)
T PRK09076          5 LDLEI-DGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADG-----DKAVA   77 (258)
T ss_pred             EEEEE-ECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhc-----ChhhH
Confidence            67776 68999999999986 9999999999999999999999999999999987899999999987531     11112


Q ss_pred             HHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHH
Q 015541          148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG  227 (405)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a  227 (405)
                      ..+......++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. .+
T Consensus        78 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~-~a  156 (258)
T PRK09076         78 REMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEG-WA  156 (258)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHH-HH
Confidence            33444455678889999999999999999999999999999999999999999999999999999999999999986 99


Q ss_pred             HHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHHHH
Q 015541          228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQITSC  305 (405)
Q Consensus       228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~~~  305 (405)
                      ++|+|||++++ |+||+++||||++||++++.+.+.++++......|.  ..+|+.++.... ......+..+...+..+
T Consensus       157 ~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~-~~~~~~~~~e~~~~~~~  234 (258)
T PRK09076        157 KRMILCGERVD-AATALRIGLVEEVVEKGEAREAALALAQKVANQSPSAVAACKTLIQAARN-GPRAAALALERELFVDL  234 (258)
T ss_pred             HHHHHcCCcCC-HHHHHHCCCCceecCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHH
Confidence            99999999999 999999999999999999999999998875444443  344555544321 11233455566678889


Q ss_pred             cCCcccHHHHHHHHHhcc
Q 015541          306 FSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       306 f~~~~~ve~i~~~Le~~~  323 (405)
                      +.+++..|++.++++++.
T Consensus       235 ~~~~~~~eg~~af~~kr~  252 (258)
T PRK09076        235 FDTEDQREGVNAFLEKRA  252 (258)
T ss_pred             hcCchHHHHHHHHhcCCC
Confidence            998888999999999887

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=100.00  E-value=4.4e-49  Score=378.11  Aligned_cols=251  Identities=27%  Similarity=0.339  Sum_probs=211.6

Q ss_pred             CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCC
Q 015541           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (405)
Q Consensus        64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (405)
                      .++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|+|+++||+|+|++++...     .
T Consensus         2 ~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~-----~   75 (260)
T PRK05809          2 ELKNVILEK-EGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDL-----N   75 (260)
T ss_pred             CcceEEEEE-eCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhcc-----C
Confidence            355678876 6899999999999999999999999999999999999999999999987899999999987541     1


Q ss_pred             CCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (405)
Q Consensus       144 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~  223 (405)
                      ......+......++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.
T Consensus        76 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~  155 (260)
T PRK05809         76 EEEGRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGP  155 (260)
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCH
Confidence            11222344444567888999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHH
Q 015541          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQ  301 (405)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~  301 (405)
                      . .+++|++||+.++ |+||+++||||+++|++++.+.+.+++.......|.  ..+|+.++.... ......++.+...
T Consensus       156 ~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~e~~~  232 (260)
T PRK05809        156 G-KAKELIYTGDMIN-AEEALRIGLVNKVVEPEKLMEEAKALANKIAANAPIAVKLCKDAINRGMQ-VDIDTAVAIEAED  232 (260)
T ss_pred             H-HHHHHHHhCCCCC-HHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc-CCHHHHHHHHHHH
Confidence            7 9999999999999 999999999999999999999999998874444443  334555544221 1112345556667


Q ss_pred             HHHHcCCcccHHHHHHHHHhcc
Q 015541          302 ITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       302 i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      +..+|.+++..|++.++++++.
T Consensus       233 ~~~~~~~~~~~egi~af~~~r~  254 (260)
T PRK05809        233 FGECFSTEDQTEGMTAFVEKRE  254 (260)
T ss_pred             HHHHhcCHHHHHHHHHHhcCCC
Confidence            8889998888999999999886

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.7e-49  Score=376.72  Aligned_cols=247  Identities=23%  Similarity=0.262  Sum_probs=208.5

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      ++.|.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++...     . 
T Consensus         3 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~-----~-   74 (257)
T PRK05862          3 YETILVET-RGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSE-KAFAAGADIKEMADL-----S-   74 (257)
T ss_pred             CceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCC-CceECCcChHhHhcc-----c-
Confidence            34577776 689999999999999999999999999999999999999999999997 899999999987531     1 


Q ss_pred             CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                       ....+......++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus        75 -~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~  153 (257)
T PRK05862         75 -FMDVYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKA  153 (257)
T ss_pred             -hhHHHHHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHH
Confidence             1112233344567789999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQI  302 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i  302 (405)
                       ++++|++||+.++ |+||+++||||++||++++.+.+.+++.+.....|.  ..+|.+++..... .....+..+...+
T Consensus       154 -~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~-~l~~~~~~e~~~~  230 (257)
T PRK05862        154 -KAMDLCLTGRMMD-AAEAERAGLVSRVVPADKLLDEALAAATTIASFSLPAVMMAKEAVNRAYET-TLAEGLLFERRLF  230 (257)
T ss_pred             -HHHHHHHhCCccC-HHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Confidence             9999999999999 999999999999999999999999998875433333  4456666543222 2233455566678


Q ss_pred             HHHcCCcccHHHHHHHHHhcc
Q 015541          303 TSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       303 ~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ..++.+++..+++.++++++.
T Consensus       231 ~~~~~s~~~~e~i~af~~kr~  251 (257)
T PRK05862        231 HSLFATEDQKEGMAAFVEKRK  251 (257)
T ss_pred             HHHhcChhHHHHHHHHhccCC
Confidence            888888888999999998886

>PLN02600 enoyl-CoA hydratase

Probab=100.00  E-value=4.9e-49  Score=375.85  Aligned_cols=242  Identities=22%  Similarity=0.323  Sum_probs=207.5

Q ss_pred             eCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHH
Q 015541           74 PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTA  153 (405)
Q Consensus        74 ~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~  153 (405)
                      +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++...     .......++..
T Consensus         2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~-----~~~~~~~~~~~   76 (251)
T PLN02600          2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKM-----SPSEVQKFVNS   76 (251)
T ss_pred             CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhcc-----ChHHHHHHHHH
Confidence            4789999999999999999999999999999999999999999999866899999999987541     11223445666


Q ss_pred             HHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhc
Q 015541          154 EYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMT  233 (405)
Q Consensus       154 ~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~lt  233 (405)
                      ...++..+..+||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. ++++|+||
T Consensus        77 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~-~a~~l~lt  155 (251)
T PLN02600         77 LRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRS-RAKELIFT  155 (251)
T ss_pred             HHHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHH-HHHHHHHh
Confidence            67788899999999999999999999999999999999999999999999999999999999999999997 99999999


Q ss_pred             CCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHHHHcCCccc
Q 015541          234 GKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKS  311 (405)
Q Consensus       234 G~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~~~f~~~~~  311 (405)
                      |++++ |+||+++||||++||++++.+.+.+++.......|.  ..+|++++.... ......+..+...+..+|.+++.
T Consensus       156 g~~~~-a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~-~~~~~~~~~e~~~~~~~~~~~d~  233 (251)
T PLN02600        156 GRRIG-AREAASMGLVNYCVPAGEAYEKALELAQEINQKGPLAIKMAKKAINEGSE-VDMASGLEIEEECYEQVLKTKDR  233 (251)
T ss_pred             CCccC-HHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhCCHHH
Confidence            99999 999999999999999999999999988774443333  344555554322 22233455566678899999989


Q ss_pred             HHHHHHHHHhcc
Q 015541          312 VRQIIEELKKHQ  323 (405)
Q Consensus       312 ve~i~~~Le~~~  323 (405)
                      .|++.++++++.
T Consensus       234 ~eg~~af~ekr~  245 (251)
T PLN02600        234 LEGLAAFAEKRK  245 (251)
T ss_pred             HHHHHHHhcCCC
Confidence            999999999987

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=100.00  E-value=6.8e-49  Score=375.91  Aligned_cols=246  Identities=17%  Similarity=0.177  Sum_probs=205.2

Q ss_pred             ccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCC
Q 015541           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (405)
Q Consensus        66 ~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (405)
                      +.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||+|+++||+|+|++++...    ..  
T Consensus         2 ~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~----~~--   74 (256)
T TIGR03210         2 EDILYEK-RNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGG----YD--   74 (256)
T ss_pred             CceEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcc----cc--
Confidence            4577776 6899999999999999999999999999999999999999999999987899999999987421    11  


Q ss_pred             chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHH
Q 015541          146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  225 (405)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~  225 (405)
                      ....+......++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.|++++|+|++|.. 
T Consensus        75 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~-  153 (256)
T TIGR03210        75 GRGTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEK-  153 (256)
T ss_pred             chhHHHHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHH-
Confidence            1111223345677889999999999999999999999999999999999999999999999998888899999999997 


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhh-hhHHHH
Q 015541          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLK-LLLPQI  302 (405)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~-~~~~~i  302 (405)
                      ++++|++||++++ |+||+++||||++||++++.+.+.++++......|.  ..+|++++.....   ...++ .+...+
T Consensus       154 ~A~~lll~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~---~~~~~~~~~~~~  229 (256)
T TIGR03210       154 KAREIWYLCRRYT-AQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKSPTAIAIAKRSFNMDTAH---QRGIAGMGMYAL  229 (256)
T ss_pred             HHHHHHHhCCCcC-HHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcc---cchHHHHHHHHH
Confidence            9999999999999 999999999999999999999999999885444443  3445555543211   11111 123456


Q ss_pred             HHHcCCcccHHHHHHHHHhcc
Q 015541          303 TSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       303 ~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ..+|.+++..|++.++++++.
T Consensus       230 ~~~~~~~d~~e~~~af~~kr~  250 (256)
T TIGR03210       230 KLYYDTAESREGVKAFQEKRK  250 (256)
T ss_pred             HHHccChhHHHHHHHHhccCC
Confidence            778888889999999999887

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-48  Score=377.35  Aligned_cols=253  Identities=21%  Similarity=0.272  Sum_probs=209.5

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhh---C
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQK---D  141 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~---~  141 (405)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++......   .
T Consensus         5 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~~~~   82 (272)
T PRK06142          5 YESFTVEL-ADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSG-KHFSYGIDLPAMAGVFGQLGKD   82 (272)
T ss_pred             cceEEEEe-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CceecccCHHHHhhhccccccc
Confidence            45688886 689999999999999999999999999999999999999999999997 899999999987542100   0


Q ss_pred             ---CCCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHh
Q 015541          142 ---RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAA  218 (405)
Q Consensus       142 ---~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~  218 (405)
                         ........+.....+++..|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~  162 (272)
T PRK06142         83 GLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLP  162 (272)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHH
Confidence               00111222334445677889999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCC-CChHHHHHHHHHhhcCCCcHHH---HHHHHHHhcCCCCCcch
Q 015541          219 KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS-GNLGSLKEALLAVTFSEDPHQD---IVALLAKYSSDPEGEAP  294 (405)
Q Consensus       219 r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~---i~~~l~~~~~~~~~~~~  294 (405)
                      +++|.. ++++|++||++++ |+||+++||||++||+ +++.+.+.+++... ...|+.+   +|..++..... .....
T Consensus       163 ~~~G~~-~a~~l~l~g~~~~-a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~i-a~~~~~a~~~~K~~l~~~~~~-~l~~~  238 (272)
T PRK06142        163 RIIGDG-HLRELALTGRDID-AAEAEKIGLVNRVYDDADALLAAAHATAREI-AAKSPLAVRGTKEVLDYMRDH-RVADG  238 (272)
T ss_pred             HHhCHH-HHHHHHHhCCCcC-HHHHHHcCCccEecCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhhcC-CHHHH
Confidence            999997 9999999999999 9999999999999996 78999999998875 4444434   45555443211 11234


Q ss_pred             hhhhHHHHHHHcCCcccHHHHHHHHHhcc
Q 015541          295 LKLLLPQITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       295 l~~~~~~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      +..+......+|.+++..|++.++++++.
T Consensus       239 ~~~~~~~~~~~~~~~d~~egv~af~~kr~  267 (272)
T PRK06142        239 LRYVATWNAAMLPSKDLTEAIAAHMEKRP  267 (272)
T ss_pred             HHHHHHHHHHHhcCccHHHHHHHHhcCCC
Confidence            44555667788999889999999999887

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.1e-48  Score=373.64  Aligned_cols=248  Identities=23%  Similarity=0.316  Sum_probs=209.4

Q ss_pred             CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCC
Q 015541           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (405)
Q Consensus        64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (405)
                      +++.+.++..+++|++||||||+++|+||.+|+.+|.++++.+++|+++|+|||+|.| ++||+|+|++++...    . 
T Consensus         5 ~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~----~-   78 (261)
T PRK08138          5 ATDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGE-KVFAAGADIKEFATA----G-   78 (261)
T ss_pred             CCCCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCC-CCeeCCcCHHHHhcc----c-
Confidence            3566788775689999999999999999999999999999999999999999999987 799999999987531    1 


Q ss_pred             CCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (405)
Q Consensus       144 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~  223 (405)
                        ....+....++++..+.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.
T Consensus        79 --~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~  156 (261)
T PRK08138         79 --AIEMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGK  156 (261)
T ss_pred             --hhHHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCH
Confidence              122334445667888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH---HHHHHHHHHhcCCCCCcchhhhhHH
Q 015541          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH---QDIVALLAKYSSDPEGEAPLKLLLP  300 (405)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~---~~i~~~l~~~~~~~~~~~~l~~~~~  300 (405)
                      . .+++|+|||++++ |+||+++||||++||++++.+.+.+++.... ..|.   ..+|+.++..... .....+..+..
T Consensus       157 ~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~-~~~~~a~~~~K~~l~~~~~~-~~~~~~~~e~~  232 (261)
T PRK08138        157 F-KAMRMALTGCMVP-APEALAIGLVSEVVEDEQTLPRALELAREIA-RMPPLALAQIKEVVLAGADA-PLDAALALERK  232 (261)
T ss_pred             H-HHHHHHHcCCCCC-HHHHHHCCCCcEecCchHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHH
Confidence            7 9999999999999 9999999999999999999999999987744 4444   3345555433211 11234455566


Q ss_pred             HHHHHcCCcccHHHHHHHHHhcc
Q 015541          301 QITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       301 ~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      .+..+|.+++..+++-++++++.
T Consensus       233 ~~~~~~~~~~~~~~i~af~~kr~  255 (261)
T PRK08138        233 AFQLLFDSEDQKEGMDAFLEKRK  255 (261)
T ss_pred             HHHHHhcCHHHHHHHHHHhcCCC
Confidence            78888988878889999998876

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.4e-48  Score=371.88  Aligned_cols=246  Identities=21%  Similarity=0.269  Sum_probs=205.2

Q ss_pred             ccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCC
Q 015541           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (405)
Q Consensus        66 ~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (405)
                      +.|.++. +++|++||||||+++|+||.+|+.+|.++++.++  +++|+|||||.| ++||+|+|++++...     ...
T Consensus         2 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g-~~F~aG~Dl~~~~~~-----~~~   72 (255)
T PRK08150          2 SLVSYEL-DGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEG-DHFCAGLDLSELRER-----DAG   72 (255)
T ss_pred             ceEEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCC-CceecCcCHHHHhhc-----cch
Confidence            3577776 6899999999999999999999999999999987  789999999997 799999999987541     111


Q ss_pred             chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHH
Q 015541          146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  225 (405)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~  225 (405)
                      ....++...+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. 
T Consensus        73 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~-  151 (255)
T PRK08150         73 EGMHHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVA-  151 (255)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHH-
Confidence            1223445556778889999999999999999999999999999999999999999999999999999999999999986 


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHH
Q 015541          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (405)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~  303 (405)
                      .+++|+|||++++ |+||+++||||++||.+++.+.+.++++......|.  ..+|+.++..... .....+..+.....
T Consensus       152 ~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~e~~~~~  229 (255)
T PRK08150        152 RMTDMMLTGRVYD-AQEGERLGLAQYLVPAGEALDKAMELARRIAQNAPLTNFAVLNALPRIADM-SADDGLFVESLMAA  229 (255)
T ss_pred             HHHHHHHcCCcCC-HHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHH
Confidence            9999999999999 999999999999999999999999998875444443  3345555543211 11233444455567


Q ss_pred             HHcCCcccHHHHHHHHHhcc
Q 015541          304 SCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       304 ~~f~~~~~ve~i~~~Le~~~  323 (405)
                      .+|.+++..|++.++++++.
T Consensus       230 ~~~~s~d~~eg~~af~~kr~  249 (255)
T PRK08150        230 VAQSAPEAKERLRAFLEKKA  249 (255)
T ss_pred             HHhcCHHHHHHHHHHhccCC
Confidence            78888878999999999886

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.3e-48  Score=372.87  Aligned_cols=247  Identities=22%  Similarity=0.302  Sum_probs=202.6

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|+|+++||+|+|++++....   ...
T Consensus         3 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~---~~~   78 (259)
T PRK06494          3 LPFSTVER-KGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGG---KRG   78 (259)
T ss_pred             CceeEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcC---cch
Confidence            56688876 68999999999999999999999999999999999999999999999878999999999875411   110


Q ss_pred             CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                      .. ...+   ..+ ..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|..
T Consensus        79 ~~-~~~~---~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~  153 (259)
T PRK06494         79 WP-ESGF---GGL-TSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLK  153 (259)
T ss_pred             hh-hHHH---HHH-HHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHH
Confidence            01 1111   122 335689999999999999999999999999999999999999999999999999999999999997


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhh--HH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLL--LP  300 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~--~~  300 (405)
                       .+++|++||+.++ |+||+++||||++||++++.+.+.++++......|.  ...|+.++.... ......+..+  ..
T Consensus       154 -~a~~lll~g~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~e~~~~  230 (259)
T PRK06494        154 -RAMGMILTGRRVT-AREGLELGFVNEVVPAGELLAAAERWADDILACSPLSIRASKQAVYRGLE-VSLEEAITAQRDYP  230 (259)
T ss_pred             -HHHHHHHcCCcCC-HHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHH
Confidence             9999999999999 999999999999999999999999999875444433  344555554321 1112233333  33


Q ss_pred             HHHHHcCCcccHHHHHHHHHhcc
Q 015541          301 QITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       301 ~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ....+|.+++..|++.++++++.
T Consensus       231 ~~~~~~~~~d~~eg~~af~~kr~  253 (259)
T PRK06494        231 AVEARRASQDYIEGPKAFAEKRP  253 (259)
T ss_pred             HHHHHhcCccHHHHHHHHHccCC
Confidence            46788888888999999999876

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.4e-48  Score=373.31  Aligned_cols=252  Identities=23%  Similarity=0.342  Sum_probs=208.4

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      ++.|.++..+++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.....  ...
T Consensus         3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~--~~~   79 (262)
T PRK07468          3 FETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAG-KSFCAGGDLGWMRAQMT--ADR   79 (262)
T ss_pred             cceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CcccCCcCHHHHHhhcc--cch
Confidence            455778764468999999999999999999999999999999999999999999997 89999999998754211  111


Q ss_pred             CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                      .....++.....++..|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++.+ +|..
T Consensus        80 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~~~-vG~~  158 (262)
T PRK07468         80 ATRIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVVAR-MGEA  158 (262)
T ss_pred             hhHHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHHhh-ccHH
Confidence            111223444556788899999999999999999999999999999999999999999999999999999986655 8986


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQI  302 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i  302 (405)
                       ++++|++||++++ |+||+++||||+++|.+++.+.+.+++.......|.  ..+|++++... .......++.+...+
T Consensus       159 -~a~~lll~g~~~~-a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~-~~~~~~~~~~e~~~~  235 (262)
T PRK07468        159 -NARRVFMSARLFD-AEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCAPGAVAAAKALVRALG-APIDEAVIDATIEAL  235 (262)
T ss_pred             -HHHHHHHhCCccC-HHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhh-ccChHHHHHHHHHHH
Confidence             9999999999999 999999999999999999988888888875444443  44566665432 122233455566778


Q ss_pred             HHHcCCcccHHHHHHHHHhcc
Q 015541          303 TSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       303 ~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ..+|.+++..|++.++++++.
T Consensus       236 ~~~~~s~d~~e~~~af~~kr~  256 (262)
T PRK07468        236 ADTWETEEAREGIAAFFDKRA  256 (262)
T ss_pred             HHHhcCHHHHHHHHHHHcCCC
Confidence            899999888999999999887

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3e-48  Score=372.65  Aligned_cols=247  Identities=22%  Similarity=0.253  Sum_probs=209.6

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      ++.|.++. +++|++||||||+++|+||.+|+++|.++++.++.|+++++|||||+|+++||+|+|++++....    ..
T Consensus         7 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~----~~   81 (262)
T PRK06144          7 TDELLLEV-RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFS----TA   81 (262)
T ss_pred             CCceEEEe-eCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhcc----ch
Confidence            45688887 68999999999999999999999999999999999999999999999878999999999875411    11


Q ss_pred             CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCcccc-ccccCCccHHHHHhcCCCh
Q 015541          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG-IGLFPDVGFSYIAAKGPGG  223 (405)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~-iGl~P~~G~~~~L~r~~G~  223 (405)
                      .....+......++..|.++||||||+|||+|+|||++|+++||||||+++++|++||++ +|++|++|++++|++++|.
T Consensus        82 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~  161 (262)
T PRK06144         82 EDAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGA  161 (262)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCH
Confidence            112234445567788899999999999999999999999999999999999999999996 9999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHH
Q 015541          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQ  301 (405)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~  301 (405)
                      . .+++|++||++++ |+||+++||||++||++++.+.+.++++......|.  ..+|..++....     ..+......
T Consensus       162 ~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~~~K~~l~~~~~-----~~l~~~~~~  234 (262)
T PRK06144        162 A-RVKDMLFTARLLE-AEEALAAGLVNEVVEDAALDARADALAELLAAHAPLTLRATKEALRRLRR-----EGLPDGDDL  234 (262)
T ss_pred             H-HHHHHHHcCCCcC-HHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh-----cCHHHHHHH
Confidence            7 9999999999999 999999999999999999999999998875444433  344555544321     134444556


Q ss_pred             HHHHcCCcccHHHHHHHHHhcc
Q 015541          302 ITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       302 i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      +..+|.+++..|++.++++++.
T Consensus       235 ~~~~~~~~~~~e~~~af~~kr~  256 (262)
T PRK06144        235 IRMCYMSEDFREGVEAFLEKRP  256 (262)
T ss_pred             HHHHhcChHHHHHHHHHhcCCC
Confidence            7888998888899999999886

>PRK08139 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=3.1e-48  Score=373.26  Aligned_cols=251  Identities=22%  Similarity=0.294  Sum_probs=210.8

Q ss_pred             CCCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCC
Q 015541           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (405)
Q Consensus        63 ~~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (405)
                      ..++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.| ++||+|+|++++...    .
T Consensus         8 ~~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~----~   81 (266)
T PRK08139          8 TEAPLLLRED-RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAG-KAFCAGHDLKEMRAA----R   81 (266)
T ss_pred             ccCCceEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCC-CcceeccCHHHHhcc----c
Confidence            3466788887 689999999999999999999999999999999999999999999997 899999999987531    1


Q ss_pred             CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCC
Q 015541          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (405)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G  222 (405)
                      .......++....+++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++| +++|+|++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG  160 (266)
T PRK08139         82 GLAYFRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVP  160 (266)
T ss_pred             chhHHHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhC
Confidence            1122344566667788899999999999999999999999999999999999999999999999999875 568999999


Q ss_pred             hHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHH
Q 015541          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLP  300 (405)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~  300 (405)
                      .. ++++|++||++++ |+||+++||||++||++++.+.+.++++......|.  ..+|++++.... ......+..+..
T Consensus       161 ~~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~e~~  237 (266)
T PRK08139        161 RK-QAMEMLLTGEFID-AATAREWGLVNRVVPADALDAAVARLAAVIAAKSPAAVRIGKEAFYRQAE-MPLADAYAYAGD  237 (266)
T ss_pred             HH-HHHHHHHcCCccC-HHHHHHcCCccEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHH
Confidence            97 9999999999999 999999999999999999999999998875444443  345555554322 111234455566


Q ss_pred             HHHHHcCCcccHHHHHHHHHhcc
Q 015541          301 QITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       301 ~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      .+..+|.+++..+++.++++++.
T Consensus       238 ~~~~~~~~~d~~eg~~af~~kr~  260 (266)
T PRK08139        238 VMAENMMAEDAEEGIDAFLEKRP  260 (266)
T ss_pred             HHHHHhcCchHHHHHHHHhcCCC
Confidence            67888888888999999999876

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=100.00  E-value=2.5e-48  Score=371.82  Aligned_cols=244  Identities=21%  Similarity=0.277  Sum_probs=206.0

Q ss_pred             EEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCch
Q 015541           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (405)
Q Consensus        68 i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (405)
                      |.+++ +++|++||||||+++|+||.+|+++|.++++.++.|++||+|||||.| ++||+|+|++++...    .   ..
T Consensus         4 i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~----~---~~   74 (255)
T PRK09674          4 LLVSR-QQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNA-RFFAAGADLNEMAEK----D---LA   74 (255)
T ss_pred             EEEEe-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CceecccChHhHhcc----c---hh
Confidence            66666 689999999999999999999999999999999999999999999997 899999999987531    1   11


Q ss_pred             HHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHH
Q 015541          148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG  227 (405)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a  227 (405)
                      ..+......++..|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. ++
T Consensus        75 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~-~a  153 (255)
T PRK09674         75 ATLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKS-LA  153 (255)
T ss_pred             hhHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHH-HH
Confidence            11222334567789999999999999999999999999999999999999999999999999999999999999986 99


Q ss_pred             HHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHHHH
Q 015541          228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQITSC  305 (405)
Q Consensus       228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~~~  305 (405)
                      ++|++||++++ |+||+++||||++||++++.+.+.++++......|.  ..+|+.++.... ......+..+...+..+
T Consensus       154 ~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~-~~~~~~~~~e~~~~~~~  231 (255)
T PRK09674        154 SQMVLTGESIT-AQQAQQAGLVSEVFPPELTLERALQLASKIARHSPLALRAAKQALRQSQE-VDLQAGLAQERQLFTLL  231 (255)
T ss_pred             HHHHHcCCccC-HHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHH
Confidence            99999999999 999999999999999999999999998885444333  344555544322 12233455566678888


Q ss_pred             cCCcccHHHHHHHHHhcc
Q 015541          306 FSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       306 f~~~~~ve~i~~~Le~~~  323 (405)
                      +.+++..+++.++++++.
T Consensus       232 ~~~~~~~e~i~af~~kr~  249 (255)
T PRK09674        232 AATEDRHEGISAFLEKRT  249 (255)
T ss_pred             hcCHHHHHHHHHHhccCC
Confidence            998888899999998876

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.3e-48  Score=372.40  Aligned_cols=251  Identities=22%  Similarity=0.311  Sum_probs=207.2

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||+| ++||+|+|++++.....  ...
T Consensus         3 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~--~~~   78 (262)
T PRK05995          3 YETLEIEQ-RGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAG-KAFCAGADLNWMKKMAG--YSD   78 (262)
T ss_pred             CceEEEEe-eCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CccccCcCHHHHhhhcc--cCc
Confidence            45688876 689999999999999999999999999999999999999999999998 89999999998754211  011


Q ss_pred             CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                      ......+...++++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|+++ |++++|..
T Consensus        79 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~-l~~~vg~~  157 (262)
T PRK05995         79 DENRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPY-VIRAMGER  157 (262)
T ss_pred             hhhhhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHHH-HHHHhCHH
Confidence            11111234456788899999999999999999999999999999999999999999999999999988765 78999987


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcch-hhhhHHH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAP-LKLLLPQ  301 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~-l~~~~~~  301 (405)
                       ++++|++||++++ |+||+++||||++||++++.+.+.++++......|.  ..+|++++....... ... ++.+...
T Consensus       158 -~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~-~~~~~~~e~~~  234 (262)
T PRK05995        158 -AARRYFLTAERFD-AAEALRLGLVHEVVPAEALDAKVDELLAALVANSPQAVRAGKRLVRDVAGRPI-DAALIADTASR  234 (262)
T ss_pred             -HHHHHHHcCCccC-HHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCh-hhHHHHHHHHH
Confidence             9999999999999 999999999999999999999999998875444433  445666654322222 223 4445556


Q ss_pred             HHHHcCCcccHHHHHHHHHhcc
Q 015541          302 ITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       302 i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      +..++.+++..+++.++++++.
T Consensus       235 ~~~~~~~~d~~e~~~af~~kr~  256 (262)
T PRK05995        235 IALIRATEEAREGVAAFLEKRK  256 (262)
T ss_pred             HHHHhcCHHHHHHHHHHhcCCC
Confidence            7788888878999999999887

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=100.00  E-value=3.8e-48  Score=374.36  Aligned_cols=253  Identities=23%  Similarity=0.304  Sum_probs=207.4

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.| ++||+|+|++++..... ....
T Consensus         7 ~~~i~~~~-~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~-~~~~   83 (275)
T PRK09120          7 WDTVKVEV-EDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAG-DAWSAGMDLKEYFRETD-AQPE   83 (275)
T ss_pred             cccEEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCC-CceecCcCHHHHhhccc-cchh
Confidence            56688887 689999999999999999999999999999999999999999999997 79999999998754211 0111


Q ss_pred             CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                      .....+....+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus        84 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~  163 (275)
T PRK09120         84 ILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHR  163 (275)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHH
Confidence            11222334456678889999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhH--H
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLL--P  300 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~--~  300 (405)
                       ++++|++||++++ |+||+++|||+++||++++.+.+.++++......|.  ..+|+.++..... .....+..+.  .
T Consensus       164 -~a~~llltg~~~~-A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~-~~~~~~~~e~~~~  240 (275)
T PRK09120        164 -DALYYIMTGETFT-GRKAAEMGLVNESVPLAQLRARTRELAAKLLEKNPVVLRAAKDGFKRVREL-TWDQAEDYLYAKL  240 (275)
T ss_pred             -HHHHHHhcCCccC-HHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHH
Confidence             9999999999999 999999999999999999999999999885544443  3456666543221 1112222222  2


Q ss_pred             HHHHHcCCc-ccHHHHHHHHHhcc
Q 015541          301 QITSCFSSE-KSVRQIIEELKKHQ  323 (405)
Q Consensus       301 ~i~~~f~~~-~~ve~i~~~Le~~~  323 (405)
                      ....+|.++ +..|++.++++++.
T Consensus       241 ~~~~~~~~~~d~~eg~~afl~kr~  264 (275)
T PRK09120        241 EQANSLDPEGGREEGLKQFLDDKS  264 (275)
T ss_pred             HHHHhhCCHHHHHHHHHHHHhccc
Confidence            344568776 68999999999876

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3e-48  Score=373.81  Aligned_cols=251  Identities=19%  Similarity=0.198  Sum_probs=207.3

Q ss_pred             CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCC
Q 015541           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (405)
Q Consensus        64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (405)
                      .++.|.++..+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....   ..
T Consensus         9 ~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~---~~   84 (268)
T PRK07327          9 DYPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEG-KAFSAGGDLALVEEMA---DD   84 (268)
T ss_pred             CCCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCC-CCcccccCHHHHhhcc---Cc
Confidence            3566888864578999999999999999999999999999999999999999999998 8999999999875421   11


Q ss_pred             CCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (405)
Q Consensus       144 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~  223 (405)
                      ......++...+.++..|..+||||||+|||+|+|||++|+++||||||+++++|++||+++|++|+.|++++|++++|.
T Consensus        85 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~  164 (268)
T PRK07327         85 FEVRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGM  164 (268)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCH
Confidence            11223345556678889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH---HHHHHHHHHhcCCCCCcchhhhhHH
Q 015541          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH---QDIVALLAKYSSDPEGEAPLKLLLP  300 (405)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~---~~i~~~l~~~~~~~~~~~~l~~~~~  300 (405)
                      . ++++|+|||++++ |+||+++|||++++|++++.+.+.+++++. +..|.   ...|+.++......  ...++....
T Consensus       165 ~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l-a~~~~~a~~~~K~~l~~~~~~~--~~~~~~~~~  239 (268)
T PRK07327        165 A-KAKYYLLLCEPVS-GEEAERIGLVSLAVDDDELLPKALEVAERL-AAGSQTAIRWTKYALNNWLRMA--GPTFDTSLA  239 (268)
T ss_pred             H-HHHHHHHcCCccC-HHHHHHcCCcceecCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhhhh--hhhHHHHHH
Confidence            7 9999999999999 999999999999999999999999998874 44444   34455555321111  112322222


Q ss_pred             HHHHHcCCcccHHHHHHHHHhcc
Q 015541          301 QITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       301 ~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      .-..+|.+++..|++.++++++.
T Consensus       240 ~~~~~~~~~d~~eg~~af~ekr~  262 (268)
T PRK07327        240 LEFMGFSGPDVREGLASLREKRA  262 (268)
T ss_pred             HHHHHccChhHHHHHHHHHhcCC
Confidence            22346777778899999999886

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=100.00  E-value=3e-48  Score=372.09  Aligned_cols=249  Identities=20%  Similarity=0.174  Sum_probs=204.1

Q ss_pred             cEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCc
Q 015541           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (405)
Q Consensus        67 ~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (405)
                      .|.++..+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++....   .....
T Consensus         3 ~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~---~~~~~   79 (259)
T TIGR01929         3 DIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYG---YIDDS   79 (259)
T ss_pred             eEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhcc---ccchh
Confidence            366765358999999999999999999999999999999999999999999999878999999999864310   00000


Q ss_pred             hHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHH
Q 015541          147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV  226 (405)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~  226 (405)
                      .. .......++..+.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. +
T Consensus        80 ~~-~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~-~  157 (259)
T TIGR01929        80 GV-HRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQK-K  157 (259)
T ss_pred             hH-HHHHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHH-H
Confidence            01 111234567789999999999999999999999999999999999999999999999999999999999999997 9


Q ss_pred             HHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHHH
Q 015541          227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQITS  304 (405)
Q Consensus       227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~~  304 (405)
                      +++|++||++++ |+||+++||||++||++++.+.+.+++++.....|.  ..+|.+++.....  .......+...+..
T Consensus       158 a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~--~~~~~~~e~~~~~~  234 (259)
T TIGR01929       158 AREIWFLCRQYD-AEQALDMGLVNTVVPLADLEKETVRWCREILQKSPMAIRMLKAALNADCDG--QAGLQELAGNATML  234 (259)
T ss_pred             HHHHHHhCCccC-HHHHHHcCCcccccCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc--chHHHHHHHHHHHH
Confidence            999999999999 999999999999999999999999998875444333  3456665543221  11222233456778


Q ss_pred             HcCCcccHHHHHHHHHhcc
Q 015541          305 CFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       305 ~f~~~~~ve~i~~~Le~~~  323 (405)
                      ++.+++..|++.++++++.
T Consensus       235 ~~~~~d~~egi~af~~kr~  253 (259)
T TIGR01929       235 FYMTEEGQEGRNAFLEKRQ  253 (259)
T ss_pred             HhcCccHHHHHHHHhccCC
Confidence            8888889999999999887

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=100.00  E-value=3.4e-48  Score=372.80  Aligned_cols=252  Identities=22%  Similarity=0.258  Sum_probs=205.3

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      ++.|.++.++++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||+|.| ++||+|+|++++....  ....
T Consensus         4 ~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~--~~~~   80 (265)
T PRK05674          4 FQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRG-RHFSAGADLAWMQQSA--DLDY   80 (265)
T ss_pred             cceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCcccCcCHHHHhhcc--cccc
Confidence            677888874478999999999999999999999999999999999999999999997 8999999999875411  0000


Q ss_pred             CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                      ..........+.++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|+++ +++++|..
T Consensus        81 ~~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~~-l~~~vG~~  159 (265)
T PRK05674         81 NTNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISPF-VVKAIGER  159 (265)
T ss_pred             hhhhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHHH-HHHHhCHH
Confidence            01111233445778889999999999999999999999999999999999999999999999999987764 88899987


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhh-hHHH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKL-LLPQ  301 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~-~~~~  301 (405)
                       ++++|+|||+.|+ |+||+++|||+++||.+++.+.+.+++.+.....|.  ...|++++....... ...+.. ....
T Consensus       160 -~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~-~~~~~~~~~~~  236 (265)
T PRK05674        160 -AARRYALTAERFD-GRRARELGLLAESYPAAELEAQVEAWIANLLLNSPQALRASKDLLREVGDGEL-SPALRRYCENA  236 (265)
T ss_pred             -HHHHHHHhCcccC-HHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhccCh-hHHHHHHHHHH
Confidence             9999999999999 999999999999999999999999998875444333  344555554322211 222322 2345


Q ss_pred             HHHHcCCcccHHHHHHHHHhcc
Q 015541          302 ITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       302 i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      +..++.+++..|++.++++++.
T Consensus       237 ~~~~~~s~d~~e~~~af~~kr~  258 (265)
T PRK05674        237 IARIRVSAEGQEGLRAFLEKRT  258 (265)
T ss_pred             HHHHhcCHHHHHHHHHHHccCC
Confidence            6778888878999999999887

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=100.00  E-value=3.1e-48  Score=371.59  Aligned_cols=247  Identities=28%  Similarity=0.384  Sum_probs=204.8

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      +..+.++. .++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||+| ++||+|+||+++.. .   ...
T Consensus         4 ~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g-~~FsaG~Dl~~~~~-~---~~~   77 (257)
T COG1024           4 YETILVER-EDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAG-KAFSAGADLKELLS-P---EDG   77 (257)
T ss_pred             CCeeEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CceecccCHHHHhc-c---cch
Confidence            34567776 466999999999999999999999999999999999999999999998 99999999999875 1   111


Q ss_pred             CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                      .....++...+.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.|++++|+|++|..
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~  157 (257)
T COG1024          78 NAAENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRG  157 (257)
T ss_pred             hHHHHHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHH
Confidence            12225777888899999999999999999999999999999999999999999999999999999889999999999997


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCC-CChHHHHHHHHHhhcCCCcHHHH---HHHHHHhcCCCCCcchhhhhHH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPS-GNLGSLKEALLAVTFSEDPHQDI---VALLAKYSSDPEGEAPLKLLLP  300 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~i---~~~l~~~~~~~~~~~~l~~~~~  300 (405)
                       .+++|++||+.++ |+||+++|||+++|+. +++.+.+.++++....  |+..+   |..+....... ....+..+..
T Consensus       158 -~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~--~~~a~~~~k~~~~~~~~~~-l~~~~~~~~~  232 (257)
T COG1024         158 -RAKELLLTGEPIS-AAEALELGLVDEVVPDAEELLERALELARRLAA--PPLALAATKRLVRAALEAD-LAEALEAEAL  232 (257)
T ss_pred             -HHHHHHHcCCcCC-HHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhhhcc-HHHHHHHHHH
Confidence             9999999999999 9999999999999995 6999999999987543  43334   44443332211 1223333444


Q ss_pred             HHHHHcCCcccHHHHHHHHHhcc
Q 015541          301 QITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       301 ~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      .+...+.+++..|++.++++ ++
T Consensus       233 ~~~~~~~~~d~~eg~~a~~~-r~  254 (257)
T COG1024         233 AFARLFSSEDFREGVRAFLE-RK  254 (257)
T ss_pred             HHHHHhcChhHHHHHHHHHc-cC
Confidence            45556777778888888888 54

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.8e-48  Score=370.94  Aligned_cols=251  Identities=22%  Similarity=0.259  Sum_probs=205.2

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      ++.+.++. +++|++||||||+++|++|.+|+++|.++++.++.|++||+|||||.| ++||+|+|++++....   ...
T Consensus         4 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~---~~~   78 (263)
T PRK07799          4 GPHALVEQ-RGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAG-GAFCAGMDLKAATKKP---PGD   78 (263)
T ss_pred             CceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CccccccCHHHHhhcc---ccc
Confidence            45688886 689999999999999999999999999999999999999999999997 8999999999986421   111


Q ss_pred             CchHH-HHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541          145 PLVPK-VFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (405)
Q Consensus       145 ~~~~~-~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~  223 (405)
                      ..... +.......+..+..+||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~  158 (263)
T PRK07799         79 SFKDGSYDPSRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPY  158 (263)
T ss_pred             hhhhhhhhhhHHHHHHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCH
Confidence            11111 11111122335789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHH
Q 015541          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQ  301 (405)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~  301 (405)
                      . ++++|++||++++ |+||+++||||++||++++.+.+.++++......|.  ..+|+.++..... .....+..+...
T Consensus       159 ~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~a~~~~K~~l~~~~~~-~l~~~~~~e~~~  235 (263)
T PRK07799        159 T-VACDLLLTGRHIT-AAEAKEIGLIGHVVPDGQALDKALELAELINANGPLAVQAILRTIRETEGM-HENEAFKIDTKI  235 (263)
T ss_pred             H-HHHHHHHcCCCCC-HHHHHHcCCccEecCcchHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhcC-CHHHHHHHHHHH
Confidence            7 9999999999999 999999999999999999999999998874433332  3445555543211 112345555667


Q ss_pred             HHHHcCCcccHHHHHHHHHhcc
Q 015541          302 ITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       302 i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      +..+|.+++..+++-++++++.
T Consensus       236 ~~~~~~~~~~~egi~af~~~r~  257 (263)
T PRK07799        236 GIPVFLSEDAKEGPRAFAEKRA  257 (263)
T ss_pred             HHHHhcCccHHHHHHHHHccCC
Confidence            7888998889999999999886

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.7e-48  Score=371.37  Aligned_cols=251  Identities=22%  Similarity=0.279  Sum_probs=207.3

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.+++++++ |+++++|||+|+| ++||+|+|++++....  ....
T Consensus         3 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~--~~~~   77 (262)
T PRK08140          3 YETILLAI-EAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAG-RGFCAGQDLADRDVTP--GGAM   77 (262)
T ss_pred             CceEEEEe-ECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCC-CCcccCcChHHHhccc--cccc
Confidence            45678886 6899999999999999999999999999999999 9999999999997 8999999999875311  0001


Q ss_pred             CchHHHHHH-HHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541          145 PLVPKVFTA-EYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (405)
Q Consensus       145 ~~~~~~~~~-~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~  223 (405)
                      ......+.. ...++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus        78 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~  157 (262)
T PRK08140         78 PDLGESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGM  157 (262)
T ss_pred             hhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCH
Confidence            111112222 2346778999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHH
Q 015541          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQ  301 (405)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~  301 (405)
                      . ++++|++||++++ |+||+++||||++||++++.+.+.++++......|.  ..+|+.++..... .....+..+...
T Consensus       158 ~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~-~~~~~~~~e~~~  234 (262)
T PRK08140        158 A-RALGLALLGEKLS-AEQAEQWGLIWRVVDDAALADEAQQLAAHLATQPTRGLALIKQAMNASATN-TLDAQLDLERDL  234 (262)
T ss_pred             H-HHHHHHHcCCCcC-HHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhC-CHHHHHHHHHHH
Confidence            7 9999999999999 999999999999999999999999998875444433  4455555543222 112345555667


Q ss_pred             HHHHcCCcccHHHHHHHHHhcc
Q 015541          302 ITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       302 i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ...+|.+++..|++.++++++.
T Consensus       235 ~~~~~~~~~~~e~~~af~~kr~  256 (262)
T PRK08140        235 QREAGRSADYAEGVSAFLEKRA  256 (262)
T ss_pred             HHHHhcChhHHHHHHHHhcCCC
Confidence            7888988888999999999886

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.9e-48  Score=371.40  Aligned_cols=244  Identities=20%  Similarity=0.233  Sum_probs=200.9

Q ss_pred             EEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchH
Q 015541           69 KGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVP  148 (405)
Q Consensus        69 ~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~  148 (405)
                      .++. +++|++||||||+++|+||.+|+.+|.++++++++|+++|+|||+|.| ++||+|+|++++....   .  ....
T Consensus         2 ~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g-~~F~aG~Dl~~~~~~~---~--~~~~   74 (255)
T PRK06563          2 SRER-RGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHG-EHFTAGLDLADVAPKL---A--AGGF   74 (255)
T ss_pred             eEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CCCcCCcCHHHHhhcc---c--cchh
Confidence            4555 689999999999999999999999999999999999999999999997 8999999999875421   0  0111


Q ss_pred             HHHHHHHHH-HHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHH
Q 015541          149 KVFTAEYSL-ICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG  227 (405)
Q Consensus       149 ~~~~~~~~l-~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a  227 (405)
                      .++....+. ...+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. .+
T Consensus        75 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~-~a  153 (255)
T PRK06563         75 PFPEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWG-NA  153 (255)
T ss_pred             hhhhhhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHH-HH
Confidence            122222222 2357899999999999999999999999999999999999999999999999999999999999997 99


Q ss_pred             HHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHH---HHHHHHhcCCCCCcchhhhhHHHHHH
Q 015541          228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDI---VALLAKYSSDPEGEAPLKLLLPQITS  304 (405)
Q Consensus       228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i---~~~l~~~~~~~~~~~~l~~~~~~i~~  304 (405)
                      ++|++||++++ |+||+++||||++||.+++.+.+.++++.. ...|..++   |+.++.... ......++.+...+..
T Consensus       154 ~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l-a~~~~~a~~~~K~~~~~~~~-~~~~~~~~~e~~~~~~  230 (255)
T PRK06563        154 MRYLLTGDEFD-AQEALRLGLVQEVVPPGEQLERAIELAERI-ARAAPLGVQATLASARAAVR-EGEAAAAAQLPPELRP  230 (255)
T ss_pred             HHHHHcCCCcC-HHHHHHcCCCcEeeCHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHH
Confidence            99999999999 999999999999999999999999998874 44444344   444443211 1112334445566788


Q ss_pred             HcCCcccHHHHHHHHHhcc
Q 015541          305 CFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       305 ~f~~~~~ve~i~~~Le~~~  323 (405)
                      +|.+++..|++.++++++.
T Consensus       231 ~~~~~d~~eg~~af~~kr~  249 (255)
T PRK06563        231 LFTSEDAKEGVQAFLERRP  249 (255)
T ss_pred             HhcCchHHHHHHHHhcCCC
Confidence            8988888999999999887

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.4e-48  Score=372.36  Aligned_cols=252  Identities=21%  Similarity=0.247  Sum_probs=207.1

Q ss_pred             cEEEEEeeCcEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhC-CCC
Q 015541           67 FVKGNVHPNGVAVITLDRPKALNAMNL-DMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD-RNT  144 (405)
Q Consensus        67 ~i~~~~~~~~v~~ItLnrp~~~Nal~~-~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~-~~~  144 (405)
                      .|.++. +++|++||||||+++|+||. +|+++|.++++.++.|++||+|||+|.| ++||+|+|++++....... ...
T Consensus         4 ~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~   81 (266)
T PRK09245          4 FLLVER-DGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAG-TAFSSGGNVKDMRARVGAFGGSP   81 (266)
T ss_pred             ceEEEE-ECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccCcCHHHHhhccccccccc
Confidence            477776 68999999999999999995 9999999999999999999999999997 8999999999885421100 011


Q ss_pred             Cch-HHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541          145 PLV-PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (405)
Q Consensus       145 ~~~-~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~  223 (405)
                      ... ..+......++..+.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~  161 (266)
T PRK09245         82 ADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGM  161 (266)
T ss_pred             hhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhH
Confidence            111 2222334567788999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHH
Q 015541          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQ  301 (405)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~  301 (405)
                      . ++++|++||++++ |+||+++||||++||.+++.+.+.++++......|.  ..+|++++..... .....+..+...
T Consensus       162 ~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~-~~~~~~~~e~~~  238 (266)
T PRK09245        162 A-RAAEMAFTGDAID-AATALEWGLVSRVVPADQLLPAARALAERIAANPPHALRLTKRLLREGQHA-SLDTLLELSAAY  238 (266)
T ss_pred             H-HHHHHHHcCCCcC-HHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcC-CHHHHHHHHHHH
Confidence            6 9999999999999 999999999999999999999999998875444433  3455555543221 112334445566


Q ss_pred             HHHHcCCcccHHHHHHHHHhcc
Q 015541          302 ITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       302 i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      +..++.+++..|++.++++++.
T Consensus       239 ~~~~~~~~d~~eg~~af~~kr~  260 (266)
T PRK09245        239 QALAHHTADHREAVDAFLEKRP  260 (266)
T ss_pred             HHHHhcCHhHHHHHHHHHcCCC
Confidence            7888888878999999999886

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=100.00  E-value=4.6e-48  Score=370.21  Aligned_cols=247  Identities=21%  Similarity=0.271  Sum_probs=204.2

Q ss_pred             EEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchH
Q 015541           69 KGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVP  148 (405)
Q Consensus        69 ~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~  148 (405)
                      .++. +++|++||||||+++|+||.+|+.+|.++++.+++|+ +|+|||||.| ++||+|+|++++....  ........
T Consensus         2 ~~e~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g-~~F~aG~Dl~~~~~~~--~~~~~~~~   76 (256)
T TIGR02280         2 LSAL-EAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAG-RGFCAGQDLSERNPTP--GGAPDLGR   76 (256)
T ss_pred             eEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCC-CCcccCcCHHHHhhcc--ccchhHHH
Confidence            4555 6899999999999999999999999999999999999 9999999997 8999999999875411  01111111


Q ss_pred             HHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHH
Q 015541          149 KVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGA  228 (405)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~  228 (405)
                      .+......++..+..+||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.. +++
T Consensus        77 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~-~a~  155 (256)
T TIGR02280        77 TIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRA-RAM  155 (256)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHH-HHH
Confidence            1222223567789999999999999999999999999999999999999999999999999999999999999997 999


Q ss_pred             HHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHHHHc
Q 015541          229 YLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQITSCF  306 (405)
Q Consensus       229 ~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~~~f  306 (405)
                      +|++||++++ |+||+++||||++||++++.+.+.++++......|.  ..+|+.++..... .....+..+.+....+|
T Consensus       156 ~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~K~~l~~~~~~-~~~~~~~~e~~~~~~~~  233 (256)
T TIGR02280       156 GLAMLGEKLD-ARTAASWGLIWQVVDDAALMDEAQALAVHLAAQPTRGLALTKRAIQAAATN-SLDTQLDLERDLQRELG  233 (256)
T ss_pred             HHHHcCCCCC-HHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcC-CHHHHHHHHHHHHHHHh
Confidence            9999999999 999999999999999999999999998875444443  3455555543221 11234455566788889


Q ss_pred             CCcccHHHHHHHHHhcc
Q 015541          307 SSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       307 ~~~~~ve~i~~~Le~~~  323 (405)
                      .+++..+++.++++++.
T Consensus       234 ~~~d~~eg~~af~~kr~  250 (256)
T TIGR02280       234 RSADYAEGVTAFLDKRN  250 (256)
T ss_pred             cChhHHHHHHHHHcCCC
Confidence            98889999999999887

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=100.00  E-value=5.6e-48  Score=370.54  Aligned_cols=250  Identities=16%  Similarity=0.179  Sum_probs=209.9

Q ss_pred             CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCC-CCCcccCCChhhHHHhhhhCC
Q 015541           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSG-PRAFCAGMDIKGVVAEIQKDR  142 (405)
Q Consensus        64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g-~~~FcaG~Dl~~~~~~~~~~~  142 (405)
                      +++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+ +|+|||||.| +++||+|+|++++...   . 
T Consensus         2 ~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~---~-   75 (261)
T PRK11423          2 SMQYVNVVT-INKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSG---G-   75 (261)
T ss_pred             CccceEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhc---c-
Confidence            355688887 6899999999999999999999999999999999987 9999999974 5899999999987531   1 


Q ss_pred             CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCC
Q 015541          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (405)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G  222 (405)
                       . ....+....+.++..|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|
T Consensus        76 -~-~~~~~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg  153 (261)
T PRK11423         76 -R-DPLSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAG  153 (261)
T ss_pred             -c-cHHHHHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhH
Confidence             1 11234455567888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcC-CCCCcchhhhhH
Q 015541          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSS-DPEGEAPLKLLL  299 (405)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~-~~~~~~~l~~~~  299 (405)
                      .. ++++|++||++++ |+||+++||||++||++++.+.+.++++......|.  ..+|+.++.... .......++.+.
T Consensus       154 ~~-~a~~l~l~g~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~  231 (261)
T PRK11423        154 FH-IVKEMFFTASPIT-AQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEQLRVLGEAHPMNPDEFERIQ  231 (261)
T ss_pred             HH-HHHHHHHcCCCcC-HHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCcchHHHHHHH
Confidence            97 9999999999999 999999999999999999999999998875444443  445666654322 111123344445


Q ss_pred             HHHHHHcCCcccHHHHHHHHHhcc
Q 015541          300 PQITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       300 ~~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      .....+|.+++..|++.++++++.
T Consensus       232 ~~~~~~~~s~d~~eg~~af~~kr~  255 (261)
T PRK11423        232 GLRRAVYDSEDYQEGMNAFLEKRK  255 (261)
T ss_pred             HHHHHHhCChhHHHHHHHHhccCC
Confidence            567788998889999999999887

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.8e-48  Score=368.43  Aligned_cols=251  Identities=24%  Similarity=0.270  Sum_probs=208.9

Q ss_pred             ccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCC
Q 015541           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (405)
Q Consensus        66 ~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (405)
                      +++.++. +++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++..... .....
T Consensus         2 ~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~-~~~~~   78 (255)
T PRK07260          2 EHIIYEV-EDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANG-KVFSVGGDLVEMKRAVD-EDDVQ   78 (255)
T ss_pred             CceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccccCHHHHHhhcc-ccchh
Confidence            4577776 689999999999999999999999999999999999999999999997 89999999998864221 11111


Q ss_pred             chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHH
Q 015541          146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  225 (405)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~  225 (405)
                      ....+....++++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. 
T Consensus        79 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~-  157 (255)
T PRK07260         79 SLVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLN-  157 (255)
T ss_pred             hHHHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHH-
Confidence            1122334456778899999999999999999999999999999999999999999999999999999999999999997 


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHH
Q 015541          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (405)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~  303 (405)
                      .+++|+|||++++ |+||+++||||++||.+++.+.+.++++......|.  ..+|+.++...... ....+..+.....
T Consensus       158 ~a~~l~l~g~~~s-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~-~~~~~~~e~~~~~  235 (255)
T PRK07260        158 RATHLAMTGEALT-AEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGSSNSYAAIKSLVWESFFKG-WEDYAKLELALQE  235 (255)
T ss_pred             HHHHHHHhCCccC-HHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHH
Confidence            9999999999999 999999999999999999999999998875544443  44555554432211 1234445566778


Q ss_pred             HHcCCcccHHHHHHHHHhc
Q 015541          304 SCFSSEKSVRQIIEELKKH  322 (405)
Q Consensus       304 ~~f~~~~~ve~i~~~Le~~  322 (405)
                      .++.+++..|++.++++++
T Consensus       236 ~~~~~~~~~e~~~af~~kr  254 (255)
T PRK07260        236 SLAFKEDFKEGVRAFSERR  254 (255)
T ss_pred             HHhcCHHHHHHHHHHHhcC
Confidence            8888888899999888875

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.7e-48  Score=369.78  Aligned_cols=247  Identities=26%  Similarity=0.345  Sum_probs=208.4

Q ss_pred             cEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCc
Q 015541           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (405)
Q Consensus        67 ~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (405)
                      .+.++. +++|++||||||++ |+||.+|+++|.++++.++.|++||+|||+|.| ++||+|+|++++...    .....
T Consensus         3 ~i~~~~-~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~----~~~~~   75 (257)
T PRK07658          3 FLSVRV-EDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEG-RFFSAGADIKEFTSV----TEAEQ   75 (257)
T ss_pred             eEEEEe-eCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceEeCcCHHHHhcc----Cchhh
Confidence            466776 68999999999986 999999999999999999999999999999997 899999999987541    11112


Q ss_pred             hHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHH
Q 015541          147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV  226 (405)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~  226 (405)
                      ...++.....++..|..+|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. +
T Consensus        76 ~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~-~  154 (257)
T PRK07658         76 ATELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKA-K  154 (257)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHH-H
Confidence            233445556788899999999999999999999999999999999999999999999999999999999999999986 9


Q ss_pred             HHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHHH
Q 015541          227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQITS  304 (405)
Q Consensus       227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~~  304 (405)
                      +++|++||++++ |+||+++||||++||++++.+.+.++++......|.  ..+|++++..... .....++.+...+..
T Consensus       155 a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~-~~~~~~~~e~~~~~~  232 (257)
T PRK07658        155 ALEMMLTSEPIT-GAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKSPATTRAVLELLQTTKSS-SYYEGVKREAKIFGE  232 (257)
T ss_pred             HHHHHHcCCCcC-HHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence            999999999999 999999999999999999999999998875443333  3445555443221 123445566677888


Q ss_pred             HcCCcccHHHHHHHHHhcc
Q 015541          305 CFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       305 ~f~~~~~ve~i~~~Le~~~  323 (405)
                      ++.+++..+++.++++++.
T Consensus       233 ~~~~~~~~egi~af~~kr~  251 (257)
T PRK07658        233 VFTSEDAKEGVQAFLEKRK  251 (257)
T ss_pred             HhCCHHHHHHHHHHHcCCC
Confidence            9998888999999999876

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.2e-48  Score=368.94  Aligned_cols=249  Identities=20%  Similarity=0.266  Sum_probs=210.4

Q ss_pred             EEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCch
Q 015541           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (405)
Q Consensus        68 i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (405)
                      +.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||+|.| ++||+|+|++++....  .......
T Consensus         5 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~F~~G~Dl~~~~~~~--~~~~~~~   80 (260)
T PRK07511          5 LLSRR-EGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAG-GFFCAGGNLNRLLENR--AKPPSVQ   80 (260)
T ss_pred             eEEEe-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCC-CCcccCcCHHHHhhcc--cccchhH
Confidence            66776 689999999999999999999999999999999999999999999997 8999999999876421  1111233


Q ss_pred             HHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHH
Q 015541          148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG  227 (405)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a  227 (405)
                      ..++...++++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|.. ++
T Consensus        81 ~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~-~a  159 (260)
T PRK07511         81 AASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQ-LA  159 (260)
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHH-HH
Confidence            44666777888899999999999999999999999999999999999999999999999999999999999999986 99


Q ss_pred             HHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHHhcCC--CCCcchhhhhHHHHHHH
Q 015541          228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSD--PEGEAPLKLLLPQITSC  305 (405)
Q Consensus       228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~~i~~~  305 (405)
                      ++|++||++++ |+||+++||||++||++++.+.+.++++.. +..|...+..+++.+...  ......+..+...+..+
T Consensus       160 ~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l-~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~  237 (260)
T PRK07511        160 TELLLEGKPIS-AERLHALGVVNRLAEPGQALAEALALADQL-AAGSPNALARIKSLIADAPEATLAAQLEAERDHFVAS  237 (260)
T ss_pred             HHHHHhCCCCC-HHHHHHcCCccEeeCchHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH
Confidence            99999999999 999999999999999999999999988774 444443444333333221  12233455666778889


Q ss_pred             cCCcccHHHHHHHHHhcc
Q 015541          306 FSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       306 f~~~~~ve~i~~~Le~~~  323 (405)
                      |.+++..+.+.+++++++
T Consensus       238 ~~~~~~~~~i~~f~~~r~  255 (260)
T PRK07511        238 LHHADALEGIAAFLEKRA  255 (260)
T ss_pred             hcCchHHHHHHHHhccCC
Confidence            999888999999999887

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.3e-48  Score=368.03  Aligned_cols=244  Identities=20%  Similarity=0.236  Sum_probs=201.1

Q ss_pred             ccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCC
Q 015541           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (405)
Q Consensus        66 ~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (405)
                      +.|.+++ +++|++||||||+++|+||.+|+.+|.+++++++.|++||+|||+|.| ++||+|+|++++...   . ...
T Consensus         3 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~---~-~~~   76 (254)
T PRK08252          3 DEVLVER-RGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAG-GTFCAGMDLKAFARG---E-RPS   76 (254)
T ss_pred             ceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CceEcCcCHHHHhcc---c-chh
Confidence            3477776 689999999999999999999999999999999999999999999997 899999999987641   1 111


Q ss_pred             chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHH
Q 015541          146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  225 (405)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~  225 (405)
                      .   +......+.  ...+||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. 
T Consensus        77 ~---~~~~~~~~~--~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~-  150 (254)
T PRK08252         77 I---PGRGFGGLT--ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYH-  150 (254)
T ss_pred             h---hHHHHHHHH--HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHH-
Confidence            1   111111221  2479999999999999999999999999999999999999999999999999999999999997 


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHH
Q 015541          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (405)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~  303 (405)
                      ++++|++||++++ |+||+++||||++||++++.+.+.+++.......|.  ..+|+.++..... .....++.+...+.
T Consensus       151 ~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~-~l~~~~~~e~~~~~  228 (254)
T PRK08252        151 IAMELALTGDMLT-AERAHELGLVNRLTEPGQALDAALELAERIAANGPLAVAASKRIVVESGDW-SEDEMFARQRELIA  228 (254)
T ss_pred             HHHHHHHcCCccC-HHHHHHcCCcceecCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHH
Confidence            9999999999999 999999999999999999999999998875444333  3445555543211 11233445556677


Q ss_pred             HHcCCcccHHHHHHHHHhcc
Q 015541          304 SCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       304 ~~f~~~~~ve~i~~~Le~~~  323 (405)
                      .++.+++..|++.++++++.
T Consensus       229 ~~~~~~~~~eg~~af~~kr~  248 (254)
T PRK08252        229 PVFTSADAKEGATAFAEKRA  248 (254)
T ss_pred             HHhcCchHHHHHHHHhcCCC
Confidence            88888888999999999876

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.4e-47  Score=370.87  Aligned_cols=252  Identities=21%  Similarity=0.264  Sum_probs=210.1

Q ss_pred             ccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCC
Q 015541           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (405)
Q Consensus        66 ~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (405)
                      +.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++..... .....
T Consensus        17 ~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-~~FsaG~Dl~~~~~~~~-~~~~~   93 (277)
T PRK08258         17 RHFLWEV-DDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAG-GNFCSGGDVHEIIGPLT-KMDMP   93 (277)
T ss_pred             cceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCC-CCcccccCHHHHhcccc-ccChh
Confidence            3678887 689999999999999999999999999999999999999999999997 89999999998753111 11111


Q ss_pred             chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccC-CccHHHHHhcCCChH
Q 015541          146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFP-DVGFSYIAAKGPGGG  224 (405)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P-~~G~~~~L~r~~G~~  224 (405)
                      ....+.....+++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++| ++|++++|+|++|..
T Consensus        94 ~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~  173 (277)
T PRK08258         94 ELLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQG  173 (277)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHH
Confidence            2233444456788899999999999999999999999999999999999999999999999995 889999999999997


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQI  302 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i  302 (405)
                       .+++|+|||++++ |+||+++||||++||.+++.+.+.+++.......|.  ..+|++++.... ......+..+...+
T Consensus       174 -~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~l~~~~~~e~~~~  250 (277)
T PRK08258        174 -RASELLYTGRSMS-AEEGERWGFFNRLVEPEELLAEAQALARRLAAGPTFAHGMTKTMLHQEWD-MGLEEAIEAEAQAQ  250 (277)
T ss_pred             -HHHHHHHcCCCCC-HHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc-CCHHHHHHHHHHHH
Confidence             9999999999999 999999999999999999999999998874443333  334555544211 11233455566678


Q ss_pred             HHHcCCcccHHHHHHHHHhcc
Q 015541          303 TSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       303 ~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ..+|.+++..|++.++++++.
T Consensus       251 ~~~~~s~d~~eg~~af~ekr~  271 (277)
T PRK08258        251 AICMQTEDFRRAYEAFVAKRK  271 (277)
T ss_pred             HHHhcCchHHHHHHHHhcCCC
Confidence            899999888999999999987

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=100.00  E-value=1e-47  Score=371.46  Aligned_cols=247  Identities=21%  Similarity=0.320  Sum_probs=203.5

Q ss_pred             eeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCC--CC----Cc
Q 015541           73 HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR--NT----PL  146 (405)
Q Consensus        73 ~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~--~~----~~  146 (405)
                      .+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++........  ..    ..
T Consensus        14 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g-~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~   92 (275)
T PLN02664         14 PNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAG-DHFCSGIDLKTLNSISEQSSSGDRGRSGER   92 (275)
T ss_pred             CCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CceeeCcChHHhhhcccccccccchhhHHH
Confidence            3689999999999999999999999999999999999999999999997 89999999998754211000  00    11


Q ss_pred             hHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHH
Q 015541          147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV  226 (405)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~  226 (405)
                      ...++....+++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +
T Consensus        93 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~-~  171 (275)
T PLN02664         93 LRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYG-N  171 (275)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCHH-H
Confidence            222334445677889999999999999999999999999999999999999999999999999999999999999997 9


Q ss_pred             HHHHHhcCCCCCcHHHHHHcCccceecCC-CChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHH
Q 015541          227 GAYLGMTGKRISTPSDALFAGLGTDYVPS-GNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (405)
Q Consensus       227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~  303 (405)
                      +++|+|||++++ |+||+++||||++||+ +++.+.+.++++......|.  ..+|+.++.... ......++.+...+.
T Consensus       172 A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~p~a~~~~K~~l~~~~~-~~~~~~~~~e~~~~~  249 (275)
T PLN02664        172 AMELALTGRRFS-GSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKSPLAVTGTKAVLLRSRE-LSVEQGLDYVATWNS  249 (275)
T ss_pred             HHHHHHhCCCCC-HHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence            999999999999 9999999999999995 88888888888775444443  345555554322 112233444555677


Q ss_pred             HHcCCcccHHHHHHHHHhcc
Q 015541          304 SCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       304 ~~f~~~~~ve~i~~~Le~~~  323 (405)
                      .+|.+++..|++.++++++.
T Consensus       250 ~~~~~~d~~eg~~af~ekr~  269 (275)
T PLN02664        250 AMLVSDDLNEAVSAQIQKRK  269 (275)
T ss_pred             HhccChhHHHHHHHHhccCC
Confidence            78888889999999999887

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=100.00  E-value=1.4e-47  Score=367.94  Aligned_cols=246  Identities=22%  Similarity=0.351  Sum_probs=203.5

Q ss_pred             cEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCc
Q 015541           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (405)
Q Consensus        67 ~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (405)
                      .|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|++||+|||||.|+++||+|+|++++....   .  . 
T Consensus         4 ~i~~~~-~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~---~--~-   75 (261)
T PRK03580          4 SLHTTR-NGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGE---A--P-   75 (261)
T ss_pred             eEEEEE-ECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccC---c--c-
Confidence            477776 6899999999996 599999999999999999999999999999999878999999999875411   1  0 


Q ss_pred             hHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHH
Q 015541          147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV  226 (405)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~  226 (405)
                      ...+....+.++..+..+||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. +
T Consensus        76 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~-~  154 (261)
T PRK03580         76 DADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPA-I  154 (261)
T ss_pred             hhhhhhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHH-H
Confidence            112222234566789999999999999999999999999999999999999999999999999999999999999997 9


Q ss_pred             HHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhH----H
Q 015541          227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLL----P  300 (405)
Q Consensus       227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~----~  300 (405)
                      ++++++||++++ |+||+++|||+++||++++.+.+.+++.......|.  ..+|++++....... ...+..+.    .
T Consensus       155 a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~-~~~~~~e~~~~~~  232 (261)
T PRK03580        155 ANEMVMTGRRMD-AEEALRWGIVNRVVPQAELMDRARELAQQLVNSAPLAIAALKEIYRETSEMPV-EEAYRYIRSGVLK  232 (261)
T ss_pred             HHHHHHhCCccC-HHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHhhhHH
Confidence            999999999999 999999999999999999999999998875444443  345555554322111 12222222    3


Q ss_pred             HHHHHcCCcccHHHHHHHHHhcc
Q 015541          301 QITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       301 ~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      .+..+|.+++..|++.++++++.
T Consensus       233 ~~~~~~~~~d~~e~~~af~ekr~  255 (261)
T PRK03580        233 HYPSVLHSEDALEGPRAFAEKRD  255 (261)
T ss_pred             HHHHHhcCccHHHHHHHHhcCCC
Confidence            56778988888999999999887

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-47  Score=369.27  Aligned_cols=255  Identities=22%  Similarity=0.279  Sum_probs=210.3

Q ss_pred             CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCC-ceEEEEeeCCCCCcccCCChhhHHHhhhhCC
Q 015541           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPR-VKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (405)
Q Consensus        64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~-v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (405)
                      .++.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++ +|+|||||.| ++||+|+|++++........
T Consensus         2 ~~~~v~~~~-~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~~   79 (266)
T PRK05981          2 QFKKVTLDF-DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAG-RGFCTGANLQGRGSGGRESD   79 (266)
T ss_pred             CcceEEEEe-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-CCcccccCHHhhhccccccc
Confidence            466788887 68999999999999999999999999999999998764 9999999997 79999999998754210000


Q ss_pred             -CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCC
Q 015541          143 -NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGP  221 (405)
Q Consensus       143 -~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~  221 (405)
                       .......+....+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~v  159 (266)
T PRK05981         80 SGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLV  159 (266)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHh
Confidence             0011223334456788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhH
Q 015541          222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLL  299 (405)
Q Consensus       222 G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~  299 (405)
                      |.. .+++|++||++++ |+||+++|||+++||++++.+.+.++++......|.  ..+|+++..... ......+..+.
T Consensus       160 g~~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~-~~~~~~~~~e~  236 (266)
T PRK05981        160 GKA-RAMELSLLGEKLP-AETALQWGLVNRVVDDAELMAEAMKLAHELANGPTVALGLIRKLYWDSPE-NDFEEQLNLER  236 (266)
T ss_pred             HHH-HHHHHHHhCCCcC-HHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-cCHHHHHHHHH
Confidence            986 9999999999999 999999999999999999999999998875444332  344555544321 11123445556


Q ss_pred             HHHHHHcCCcccHHHHHHHHHhcc
Q 015541          300 PQITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       300 ~~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      .....+|.+++..|++.++++++.
T Consensus       237 ~~~~~~~~s~d~~e~~~af~~kr~  260 (266)
T PRK05981        237 EAQRIAGKTEDFKEGVGAFLQKRP  260 (266)
T ss_pred             HHHHHHhcChhHHHHHHHHhcCCC
Confidence            667888999889999999999887

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.4e-47  Score=374.14  Aligned_cols=255  Identities=22%  Similarity=0.277  Sum_probs=206.7

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhC---
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD---  141 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~---  141 (405)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.......   
T Consensus         3 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~   80 (296)
T PRK08260          3 YETIRYDV-ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAG-RAFCAGADLSAGGNTFDLDAPR   80 (296)
T ss_pred             cceEEEee-eCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CCeecCcChHHhhhcccccccc
Confidence            45578876 689999999999999999999999999999999999999999999997 8999999999875311000   


Q ss_pred             ---------CCCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCcc
Q 015541          142 ---------RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVG  212 (405)
Q Consensus       142 ---------~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G  212 (405)
                               ........+......++..|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g  160 (296)
T PRK08260         81 TPVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAA  160 (296)
T ss_pred             cccccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcc
Confidence                     00001122333334577889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH---HHHHHHHHHhcCCC
Q 015541          213 FSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH---QDIVALLAKYSSDP  289 (405)
Q Consensus       213 ~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~---~~i~~~l~~~~~~~  289 (405)
                      ++++|+|++|.. ++++|+|||++++ |+||+++||||++||.+++.+.+.+++.......|.   ..+|++++......
T Consensus       161 ~~~~l~r~vG~~-~A~~llltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~~a~~~~K~~l~~~~~~~  238 (296)
T PRK08260        161 SSWFLPRLVGLQ-TALEWVYSGRVFD-AQEALDGGLVRSVHPPDELLPAARALAREIADNTSPVSVALTRQMMWRMAGAD  238 (296)
T ss_pred             hhhhHHHhhCHH-HHHHHHHcCCccC-HHHHHHCCCceeecCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccCC
Confidence            999999999997 9999999999999 999999999999999999999999998875443243   34455554431111


Q ss_pred             CCcchhhhhHHHHHHHcCCcccHHHHHHHHHhcc
Q 015541          290 EGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       290 ~~~~~l~~~~~~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ........+...+..++.+++..|++.++++++.
T Consensus       239 ~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~  272 (296)
T PRK08260        239 HPMEAHRVDSRAIYSRGRSGDGKEGVSSFLEKRP  272 (296)
T ss_pred             CcHHHHHHHHHHHHHHccChhHHHHHHHHhcCCC
Confidence            1112223344557788888878999999998886

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.1e-47  Score=366.49  Aligned_cols=246  Identities=25%  Similarity=0.316  Sum_probs=208.6

Q ss_pred             ccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCC
Q 015541           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (405)
Q Consensus        66 ~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (405)
                      +.|.++. +++|++||||||+++|++|.+|+.+|.++++.+ .|+++|+|||+|.| ++||+|+|++++...    ....
T Consensus         6 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g-~~F~aG~Dl~~~~~~----~~~~   78 (260)
T PRK07659          6 ESVVVKY-EGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNG-RGFSAGGDIKMMLSS----NDES   78 (260)
T ss_pred             ceEEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCC-CCcccccCHHHHhhc----cCch
Confidence            4578876 689999999999999999999999999999999 58899999999997 899999999987541    1112


Q ss_pred             chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHH
Q 015541          146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  225 (405)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~  225 (405)
                      ....++...++++..+..+||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. 
T Consensus        79 ~~~~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~-  157 (260)
T PRK07659         79 KFDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGEN-  157 (260)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHH-
Confidence            3345666677888899999999999999999999999999999999999999999999999999999999999999997 


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHH---HHHHHHHhcCCCCCcchhhhhHHHH
Q 015541          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQD---IVALLAKYSSDPEGEAPLKLLLPQI  302 (405)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~---i~~~l~~~~~~~~~~~~l~~~~~~i  302 (405)
                      .+++|++||+.++ |+||+++||||++| ++++.+.+.++++.. ...|..+   +|++++...... ....+..+....
T Consensus       158 ~a~~l~ltg~~~~-a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l-~~~~~~a~~~~K~~l~~~~~~~-l~~~~~~e~~~~  233 (260)
T PRK07659        158 KAKQIIWEGKKLS-ATEALDLGLIDEVI-GGDFQTAAKQKISEW-LQKPLKAMIETKQIYCELNRSQ-LEQVLQLEKRAQ  233 (260)
T ss_pred             HHHHHHHhCCccC-HHHHHHcCChHHHh-hhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhhhcCC-HHHHHHHHHHHH
Confidence            9999999999999 99999999999999 788999999998875 4445434   455554432211 123444555667


Q ss_pred             HHHcCCcccHHHHHHHHHhcc
Q 015541          303 TSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       303 ~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ..+|.+++..|+|.++++++.
T Consensus       234 ~~~~~~~~~~egi~af~~kr~  254 (260)
T PRK07659        234 YAMRQTADHKEGIRAFLEKRL  254 (260)
T ss_pred             HHHhcCHhHHHHHHHHhcCCC
Confidence            788888889999999999987

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=100.00  E-value=2.6e-47  Score=368.22  Aligned_cols=250  Identities=19%  Similarity=0.176  Sum_probs=205.1

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.|+++||+|+|++++....  ....
T Consensus        12 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~--~~~~   88 (273)
T PRK07396         12 YEDILYKS-ADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGG--YVDD   88 (273)
T ss_pred             CcceEEEe-cCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhccc--ccch
Confidence            45688876 68999999999999999999999999999999999999999999999867999999999864210  0000


Q ss_pred             CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                      .... .+ ..+.++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|..
T Consensus        89 ~~~~-~~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~  166 (273)
T PRK07396         89 DGVP-RL-NVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQK  166 (273)
T ss_pred             hhhh-hh-HHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHH
Confidence            0111 11 123566789999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQI  302 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i  302 (405)
                       .+++|++||+.++ |+||+++||||++||++++.+.+.+++.......|.  ..+|++++....  ........+....
T Consensus       167 -~a~~l~ltg~~~~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~--~~~~~~~~e~~~~  242 (273)
T PRK07396        167 -KAREIWFLCRQYD-AQEALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNADCD--GQAGLQELAGNAT  242 (273)
T ss_pred             -HHHHHHHhCCCcC-HHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc--cHHHHHHHHHHHH
Confidence             9999999999999 999999999999999999999999999885544443  445555554311  1111122334456


Q ss_pred             HHHcCCcccHHHHHHHHHhcc
Q 015541          303 TSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       303 ~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ..++.+++..|++.++++++.
T Consensus       243 ~~~~~~~d~~egi~af~~kr~  263 (273)
T PRK07396        243 MLFYMTEEAQEGRNAFNEKRQ  263 (273)
T ss_pred             HHHhcChhHHHHHHHHhCCCC
Confidence            678888878999999999886

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.9e-47  Score=369.13  Aligned_cols=255  Identities=22%  Similarity=0.266  Sum_probs=207.8

Q ss_pred             CCccEEEEEeeC-cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCC
Q 015541           64 AEEFVKGNVHPN-GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (405)
Q Consensus        64 ~~~~i~~~~~~~-~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (405)
                      .++.|.++. ++ +|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++........
T Consensus         3 ~~~~i~~~~-~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~~   80 (272)
T PRK06210          3 AYDAVLYEV-ADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAG-RGFCAGADMGELQTIDPSDG   80 (272)
T ss_pred             CcceEEEEE-CCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCC-CCcccccCHHHHhccCcccc
Confidence            456788887 56 9999999999999999999999999999999999999999999997 79999999998754210000


Q ss_pred             C-CCchHHHH----HHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHH
Q 015541          143 N-TPLVPKVF----TAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIA  217 (405)
Q Consensus       143 ~-~~~~~~~~----~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L  217 (405)
                      . ......+.    ....+++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l  160 (272)
T PRK06210         81 RRDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWIL  160 (272)
T ss_pred             cccccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhh
Confidence            0 00001111    122345678999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH---HHHHHHHHHhcCCCCCcch
Q 015541          218 AKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH---QDIVALLAKYSSDPEGEAP  294 (405)
Q Consensus       218 ~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~---~~i~~~l~~~~~~~~~~~~  294 (405)
                      +|++|.. .+++|+|||++++ |++|+++||||++||++++.+.+.+++.......++   ..+|+.++..... .....
T Consensus       161 ~~~ig~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~p~a~~~~K~~l~~~~~~-~l~~~  237 (272)
T PRK06210        161 PRLVGHA-NALDLLLSARTFY-AEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSPASMAVIKRQLYEDAFQ-TLAEA  237 (272)
T ss_pred             HhhhCHH-HHHHHHHcCCccC-HHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccC-CHHHH
Confidence            9999987 9999999999999 999999999999999999999999998875443243   3445555443211 11234


Q ss_pred             hhhhHHHHHHHcCCcccHHHHHHHHHhcc
Q 015541          295 LKLLLPQITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       295 l~~~~~~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ++.+...+..+|.+++..|++.++++++.
T Consensus       238 ~~~e~~~~~~~~~~~~~~egi~af~~kr~  266 (272)
T PRK06210        238 TARANREMHESLQRPDFIEGVASFLEKRP  266 (272)
T ss_pred             HHHHHHHHHHHhcCccHHHHHHHHhccCC
Confidence            55555667888888888999999999887

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.4e-47  Score=363.21  Aligned_cols=243  Identities=20%  Similarity=0.235  Sum_probs=201.0

Q ss_pred             cEEEEEeeC--cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           67 FVKGNVHPN--GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        67 ~i~~~~~~~--~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      .|.++..++  +|++||||||+++|+||.+|+++|.++++.+++|+++|+|||+|.| ++||+|+|++++....   .. 
T Consensus         4 ~i~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~---~~-   78 (251)
T PRK06023          4 HILVERPGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTE-GCFSAGNDMQDFLAAA---MG-   78 (251)
T ss_pred             eEEEEeecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCeecCcCHHHHhhcc---cc-
Confidence            477776322  5999999999999999999999999999999999999999999997 7999999999875411   01 


Q ss_pred             CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                        ...+....++++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|..
T Consensus        79 --~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~  156 (251)
T PRK06023         79 --GTSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQ  156 (251)
T ss_pred             --chhhHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHH
Confidence              112333445677889999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHH---HHHHHHHhcCCCCCcchhhhhHHH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQD---IVALLAKYSSDPEGEAPLKLLLPQ  301 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~---i~~~l~~~~~~~~~~~~l~~~~~~  301 (405)
                       +++++++||+.++ |+||+++|||+++||.+++.+.+.+++++. ...|+.+   .|++++... . .....+..+...
T Consensus       157 -~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l-~~~~~~a~~~~K~~l~~~~-~-~l~~~~~~e~~~  231 (251)
T PRK06023        157 -RAFALLALGEGFS-AEAAQEAGLIWKIVDEEAVEAETLKAAEEL-AAKPPQALQIARDLMRGPR-E-DILARIDEEAKH  231 (251)
T ss_pred             -HHHHHHHhCCCCC-HHHHHHcCCcceeeCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhch-h-hHHHHHHHHHHH
Confidence             9999999999999 999999999999999999999999998875 4444434   455554321 1 112234444556


Q ss_pred             HHHHcCCcccHHHHHHHHHh
Q 015541          302 ITSCFSSEKSVRQIIEELKK  321 (405)
Q Consensus       302 i~~~f~~~~~ve~i~~~Le~  321 (405)
                      ...+|.+++..|++.+++++
T Consensus       232 ~~~~~~~~~~~e~~~af~e~  251 (251)
T PRK06023        232 FAARLKSAEARAAFEAFMRR  251 (251)
T ss_pred             HHHHhCCHHHHHHHHHHhcC
Confidence            77788888778888877763

>PLN02888 enoyl-CoA hydratase

Probab=100.00  E-value=6.5e-47  Score=363.87  Aligned_cols=250  Identities=20%  Similarity=0.300  Sum_probs=205.5

Q ss_pred             CCCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCC
Q 015541           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (405)
Q Consensus        63 ~~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (405)
                      .+++.|.++..+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....  ..
T Consensus         6 ~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~--~~   82 (265)
T PLN02888          6 VSENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSG-RAFCSGVDLTAAEEVF--KG   82 (265)
T ss_pred             CCCCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CcccCCCCHHHHHhhc--cc
Confidence            34567888765689999999999999999999999999999999999999999999997 8999999999865311  01


Q ss_pred             CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCC
Q 015541          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (405)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G  222 (405)
                         ...   ....+++..|..+|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|
T Consensus        83 ---~~~---~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG  156 (265)
T PLN02888         83 ---DVK---DVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIG  156 (265)
T ss_pred             ---hhh---HHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhC
Confidence               111   11235666789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHH
Q 015541          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLP  300 (405)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~  300 (405)
                      .. ++++|+|||++++ |+||+++||||++||.+++.+.+.++++......|.  ..+|++++..... .....+..+..
T Consensus       157 ~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~e~~  233 (265)
T PLN02888        157 AN-RAREVSLTAMPLT-AETAERWGLVNHVVEESELLKKAREVAEAIIKNNQGMVLRYKSVINDGLKL-DLGHALQLEKE  233 (265)
T ss_pred             HH-HHHHHHHhCCccC-HHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcC-CHHHHHHHHHH
Confidence            97 9999999999999 999999999999999999999999999875444443  4456666543221 11233444444


Q ss_pred             HHHHHc--CCcccHHHHHHHHHhccC
Q 015541          301 QITSCF--SSEKSVRQIIEELKKHQS  324 (405)
Q Consensus       301 ~i~~~f--~~~~~ve~i~~~Le~~~~  324 (405)
                      ....++  .+++..|++.++++++..
T Consensus       234 ~~~~~~~~~~~d~~e~~~af~ekr~~  259 (265)
T PLN02888        234 RAHDYYNGMTKEQFQKMQEFIAGRSS  259 (265)
T ss_pred             HHHHHhccCCHHHHHHHHHHHhcCCC
Confidence            556664  466688999999998874

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.3e-47  Score=369.17  Aligned_cols=255  Identities=20%  Similarity=0.256  Sum_probs=202.2

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCC--
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR--  142 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~--  142 (405)
                      .+.|.++..+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++......+.  
T Consensus         8 ~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g-~~FcaG~Dl~~~~~~~~~~~~~   86 (276)
T PRK05864          8 MSLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAG-RGFSSGADHKSAGVVPHVEGLT   86 (276)
T ss_pred             CCceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCeecCcchhhhhccccccccc
Confidence            455777754689999999999999999999999999999999999999999999997 89999999998743110000  


Q ss_pred             CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccC-CccHHHHHhcCC
Q 015541          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFP-DVGFSYIAAKGP  221 (405)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P-~~G~~~~L~r~~  221 (405)
                      .......++.....++..|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|+|++
T Consensus        87 ~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~v  166 (276)
T PRK05864         87 RPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAI  166 (276)
T ss_pred             chhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhh
Confidence            0111112344455677889999999999999999999999999999999999999999999999997 789999999999


Q ss_pred             ChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHH---HHHHHHhcCCCCCcchhhhh
Q 015541          222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDI---VALLAKYSSDPEGEAPLKLL  298 (405)
Q Consensus       222 G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i---~~~l~~~~~~~~~~~~l~~~  298 (405)
                      |.. .+++|+|||++++ |+||+++|||+++||++++.+.+.+++.+.. ..|+.++   |+.++...........+..+
T Consensus       167 G~~-~A~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la-~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e  243 (276)
T PRK05864        167 GSS-RAFEIMLTGRDVD-AEEAERIGLVSRQVPDEQLLDTCYAIAARMA-GFSRPGIELTKRTLWSGLDAASLEAHMQAE  243 (276)
T ss_pred             CHH-HHHHHHHcCCccC-HHHHHHcCCcceeeCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHhhcccCCHHHHHHHH
Confidence            987 9999999999999 9999999999999999999999999988754 4444344   55554321110111222222


Q ss_pred             HH-HHHHHcCCcccHHHHHHHHHhcc
Q 015541          299 LP-QITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       299 ~~-~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      .. ....+|.+++..|++.++++++.
T Consensus       244 ~~~~~~~~~~~~d~~e~~~af~~kr~  269 (276)
T PRK05864        244 GLGQLFVRLLTANFEEAVAARAEKRP  269 (276)
T ss_pred             HHHHHHHhccChhHHHHHHHHhccCC
Confidence            21 12235677778999999999886

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.4e-47  Score=362.81  Aligned_cols=244  Identities=21%  Similarity=0.297  Sum_probs=203.5

Q ss_pred             cEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCc
Q 015541           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (405)
Q Consensus        67 ~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (405)
                      .|.++. +++|++||||||+++|+||.+|+++|.++++.++.|+++|+|||+|.| ++||+|+|++++....   .  ..
T Consensus         4 ~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~---~--~~   76 (249)
T PRK05870          4 PVLLDV-DDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAG-KAFCAGADLTALGAAP---G--RP   76 (249)
T ss_pred             cEEEEc-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCeecCcChHHHhccc---c--cc
Confidence            467776 689999999999999999999999999999999999999999999997 8999999999876421   1  11


Q ss_pred             hHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHH
Q 015541          147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV  226 (405)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~  226 (405)
                      ...++...+.++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. .
T Consensus        77 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~-~  155 (249)
T PRK05870         77 AEDGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQ-V  155 (249)
T ss_pred             hHHHHHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHH-H
Confidence            233455566778889999999999999999999999999999999999999999999999999999999999999987 9


Q ss_pred             HHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHHH
Q 015541          227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQITS  304 (405)
Q Consensus       227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~~  304 (405)
                      +++|++||++++ |+||+++||||++|  +++.+.+.+++++.....|.  ..+|+.++...........+..+......
T Consensus       156 a~~l~ltg~~~~-a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~l~~~~~~e~~~~~~  232 (249)
T PRK05870        156 ARAALLFGMRFD-AEAAVRHGLALMVA--DDPVAAALELAAGPAAAPRELVLATKASMRATASLAQHAAAVEFELGPQAA  232 (249)
T ss_pred             HHHHHHhCCccC-HHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHH
Confidence            999999999999 99999999999999  67888999998875444443  34455554432101122344555667788


Q ss_pred             HcCCcccHHHHHHHHHh
Q 015541          305 CFSSEKSVRQIIEELKK  321 (405)
Q Consensus       305 ~f~~~~~ve~i~~~Le~  321 (405)
                      +|.+++..|++.+++++
T Consensus       233 ~~~~~d~~eg~~af~~~  249 (249)
T PRK05870        233 SVQSPEFAARLAAAQRR  249 (249)
T ss_pred             HhcChhHHHHHHHHhcC
Confidence            89888788888887763

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.6e-47  Score=362.76  Aligned_cols=246  Identities=23%  Similarity=0.314  Sum_probs=209.2

Q ss_pred             ccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCC
Q 015541           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (405)
Q Consensus        66 ~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (405)
                      ..|.++. +++|++|+||||++.|+||.+|+++|.++++.++.|+++++|||+|.| ++||+|+|++++....   .  .
T Consensus         5 ~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~---~--~   77 (259)
T PRK06688          5 TDLLVEL-EDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAG-RAFSAGGDIKDFPKAP---P--K   77 (259)
T ss_pred             CceEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCccCccCHHHHhccC---c--c
Confidence            3477776 689999999999999999999999999999999999999999999997 8999999999876421   1  1


Q ss_pred             chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHH
Q 015541          146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  225 (405)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~  225 (405)
                      . ..++...++++..|.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. 
T Consensus        78 ~-~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~-  155 (259)
T PRK06688         78 P-PDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRA-  155 (259)
T ss_pred             h-HHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHH-
Confidence            1 33556667788899999999999999999999999999999999999999999999999999999999999999986 


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHH---HHHHHHHhcCCCCCcchhhhhHHHH
Q 015541          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQD---IVALLAKYSSDPEGEAPLKLLLPQI  302 (405)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~---i~~~l~~~~~~~~~~~~l~~~~~~i  302 (405)
                      .+++|++||++++ |+||+++||||+++|++++.+.+.++++.. ...|..+   .|+.++.-.. ......+..+...+
T Consensus       156 ~a~~l~l~g~~~~-a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i-~~~~~~a~~~~K~~l~~~~~-~~~~~~~~~e~~~~  232 (259)
T PRK06688        156 RAAEMLLLGEPLS-AEEALRIGLVNRVVPAAELDAEADAQAAKL-AAGPASALRYTKRAINAATL-TELEEALAREAAGF  232 (259)
T ss_pred             HHHHHHHhCCccC-HHHHHHcCCcceecCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhhhh-CCHHHHHHHHHHHH
Confidence            9999999999999 999999999999999999999999998874 4444433   4555543221 12234455566677


Q ss_pred             HHHcCCcccHHHHHHHHHhcc
Q 015541          303 TSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       303 ~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      .++|.+++..+.+-++++++.
T Consensus       233 ~~~~~~~~~~~~~~af~~~~~  253 (259)
T PRK06688        233 GRLLRTPDFREGATAFIEKRK  253 (259)
T ss_pred             HHHhCCHHHHHHHHHHHcCCC
Confidence            888998878888888888876

>PLN02921 naphthoate synthase

Probab=100.00  E-value=9e-47  Score=371.77  Aligned_cols=252  Identities=18%  Similarity=0.174  Sum_probs=207.2

Q ss_pred             CCccEEEEEe-eCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCC
Q 015541           64 AEEFVKGNVH-PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (405)
Q Consensus        64 ~~~~i~~~~~-~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (405)
                      .++.|.++.. +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++....  ..
T Consensus        63 ~~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~--~~  140 (327)
T PLN02921         63 EFTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDG--YV  140 (327)
T ss_pred             CCceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhccc--cc
Confidence            4567888763 58999999999999999999999999999999999999999999999878999999999764310  00


Q ss_pred             CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCC
Q 015541          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (405)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G  222 (405)
                      .......+  ....++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus       141 ~~~~~~~~--~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG  218 (327)
T PLN02921        141 GPDDAGRL--NVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVG  218 (327)
T ss_pred             chhHHHHH--HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhC
Confidence            00011111  1235677899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHH
Q 015541          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLP  300 (405)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~  300 (405)
                      .. .+++|++||+.++ |+||+++||||++||.+++.+.+.+++.+.....|.  ..+|++++.....  ..........
T Consensus       219 ~~-~A~ellltG~~~~-A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~al~~~K~~l~~~~~~--~~~~~~~~~~  294 (327)
T PLN02921        219 QK-KAREMWFLARFYT-ASEALKMGLVNTVVPLDELEGETVKWCREILRNSPTAIRVLKSALNAADDG--HAGLQELGGN  294 (327)
T ss_pred             HH-HHHHHHHcCCcCC-HHHHHHCCCceEEeCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc--hhHHHHHHHH
Confidence            97 9999999999999 999999999999999999999999999885444443  4456666543221  1122222335


Q ss_pred             HHHHHcCCcccHHHHHHHHHhcc
Q 015541          301 QITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       301 ~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ....+|.+++..|++.++++++.
T Consensus       295 ~~~~~~~s~d~~egi~Af~ekr~  317 (327)
T PLN02921        295 ATLLFYGSEEGNEGRTAYLEGRA  317 (327)
T ss_pred             HHHHHhcCHHHHHHHHHHhccCC
Confidence            56778888889999999999987

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.4e-47  Score=362.65  Aligned_cols=250  Identities=22%  Similarity=0.267  Sum_probs=203.8

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      ++.+.+++ +++|++||||||+++|+||.+|+++|.++++.++.|+++|+|||+|.| ++||+|+|++++....  ....
T Consensus         2 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~--~~~~   77 (262)
T PRK07509          2 MDRVSVTI-EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEG-GAFCAGLDVKSVASSP--GNAV   77 (262)
T ss_pred             CceEEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCC-CCcCCCcCHHHHhccc--chhh
Confidence            45688887 699999999999999999999999999999999999999999999997 8999999999876421  0000


Q ss_pred             CchHH----HHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcC
Q 015541          145 PLVPK----VFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG  220 (405)
Q Consensus       145 ~~~~~----~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~  220 (405)
                      .....    .......++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~  157 (262)
T PRK07509         78 KLLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGL  157 (262)
T ss_pred             hhHhhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHH
Confidence            01111    11222345667889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhh
Q 015541          221 PGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLL  298 (405)
Q Consensus       221 ~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~  298 (405)
                      +|.. ++++|+|||++++ |+||+++||||++|+.  +.+.+.++++......|.  ..+|+.++...... ....+..+
T Consensus       158 ~g~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~--~~~~a~~~a~~l~~~~~~~~~~~K~~l~~~~~~~-~~~~~~~e  232 (262)
T PRK07509        158 VRKD-VARELTYTARVFS-AEEALELGLVTHVSDD--PLAAALALAREIAQRSPDAIAAAKRLINRSWTAS-VRALLARE  232 (262)
T ss_pred             hCHH-HHHHHHHcCCCcC-HHHHHHcCChhhhhch--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC-HHHHHHHH
Confidence            9986 9999999999999 9999999999999953  667788887774443333  45566665542221 12334455


Q ss_pred             HHHHHHHcCCcccHHHHHHHHHhcc
Q 015541          299 LPQITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       299 ~~~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ......+|.+++..+++.++++++.
T Consensus       233 ~~~~~~~~~~~d~~e~~~af~ekr~  257 (262)
T PRK07509        233 SVEQIRLLLGKNQKIAVKAQMKKRA  257 (262)
T ss_pred             HHHHHHHhcChhHHHHHHHHhcCCC
Confidence            5667888888889999999999886

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.7e-46  Score=358.91  Aligned_cols=245  Identities=18%  Similarity=0.170  Sum_probs=197.2

Q ss_pred             ccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCC
Q 015541           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (405)
Q Consensus        66 ~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (405)
                      +.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++....   .  .
T Consensus         3 ~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g-~~FcaG~Dl~~~~~~~---~--~   75 (254)
T PRK08259          3 MSVRVER-NGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAG-GTFCAGADLKAVGTGR---G--N   75 (254)
T ss_pred             ceEEEEE-ECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCccCCcChHHHhccc---c--h
Confidence            3477776 689999999999999999999999999999999999999999999997 8999999999875411   1  0


Q ss_pred             chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHH
Q 015541          146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  225 (405)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~  225 (405)
                      .....  ....+...+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|+.|++|++++|+|++|.. 
T Consensus        76 ~~~~~--~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~-  152 (254)
T PRK08259         76 RLHPS--GDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHS-  152 (254)
T ss_pred             hhhhh--hcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHH-
Confidence            01000  001112233479999999999999999999999999999999999999999999999999999999999997 


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHH
Q 015541          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (405)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~  303 (405)
                      .+++|++||++++ |+||+++||||++||.+++.+.+.++++......|.  ...|++++.... ......+..+.....
T Consensus       153 ~a~~lll~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~-~~~~~~~~~e~~~~~  230 (254)
T PRK08259        153 RAMDLILTGRPVD-ADEALAIGLANRVVPKGQARAAAEELAAELAAFPQTCLRADRLSALEQWG-LPEEAALANEFAHGL  230 (254)
T ss_pred             HHHHHHHcCCccC-HHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHH
Confidence            9999999999999 999999999999999999999999999875444443  334555544221 111223344444455


Q ss_pred             HHcCCcccHHHHHHHHHhcc
Q 015541          304 SCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       304 ~~f~~~~~ve~i~~~Le~~~  323 (405)
                      .+|. ++..|++.+++++..
T Consensus       231 ~~~~-~d~~egi~af~~~~~  249 (254)
T PRK08259        231 AVLA-AEALEGAARFAAGAG  249 (254)
T ss_pred             HHHh-hHHHHHHHHHHhhhc
Confidence            6676 668999999998764

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=100.00  E-value=2.2e-46  Score=362.36  Aligned_cols=253  Identities=19%  Similarity=0.230  Sum_probs=205.7

Q ss_pred             CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCC-CCcccCCChhhHHHhhhhCC
Q 015541           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGP-RAFCAGMDIKGVVAEIQKDR  142 (405)
Q Consensus        64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~-~~FcaG~Dl~~~~~~~~~~~  142 (405)
                      ..+.|.++..+++|++||||||+ .|+||.+|+.+|.++++.+++|+++|+|||||.|+ ++||+|+|++++...   ..
T Consensus         9 ~~~~i~~~~~~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~---~~   84 (278)
T PLN03214          9 ATPGVRVDRRPGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAP---KT   84 (278)
T ss_pred             CCCceEEEEcCCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhcc---cc
Confidence            35568888645899999999986 69999999999999999999999999999999973 699999999987531   11


Q ss_pred             CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccc-cCCccHHHHHhcCC
Q 015541          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGL-FPDVGFSYIAAKGP  221 (405)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl-~P~~G~~~~L~r~~  221 (405)
                      .......++.....++..|..+||||||+|||+|+|||++|+++|||||++++++|++||+++|+ +|++|++++|+|++
T Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~  164 (278)
T PLN03214         85 SAARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVI  164 (278)
T ss_pred             chHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhc
Confidence            11112234444456778899999999999999999999999999999999999999999999999 59999999999999


Q ss_pred             ChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhH
Q 015541          222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLL  299 (405)
Q Consensus       222 G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~  299 (405)
                      |.. ++++|+|||++++ |+||+++||||++||.+++.+.+.+++.......|.  ..+|..++..... .....++.+.
T Consensus       165 G~~-~a~~llltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~-~l~~~~~~e~  241 (278)
T PLN03214        165 DRK-VAESLLLRGRLVR-PAEAKQLGLIDEVVPAAALMEAAASAMERALKLPSAARAATKALLREEFSA-AWEAYYEEEA  241 (278)
T ss_pred             CHH-HHHHHHHcCCccC-HHHHHHcCCCcEecChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhHHH-HHHHHHHHHH
Confidence            997 9999999999999 999999999999999999999999998875444443  3345555432111 1122344455


Q ss_pred             HHHHHHcCCcccHHHHHHHHHhcc
Q 015541          300 PQITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       300 ~~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      .....++.+++..|++.+++++..
T Consensus       242 ~~~~~~~~s~d~~egi~aflek~~  265 (278)
T PLN03214        242 KGGWKMLSEPSIIKALGGVMERLS  265 (278)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHh
Confidence            567778888878888888887754

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.8e-46  Score=357.02  Aligned_cols=233  Identities=24%  Similarity=0.309  Sum_probs=193.6

Q ss_pred             CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCC
Q 015541           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (405)
Q Consensus        64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (405)
                      .++.|.++. +++|++||||||+++|+||.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++....     
T Consensus         2 ~~~~v~~~~-~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~-----   74 (258)
T PRK06190          2 TEPILLVET-HDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGAD-PAFCAGLDLKELGGDG-----   74 (258)
T ss_pred             CCceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCccCCcCHHHHhccc-----
Confidence            356788887 689999999999999999999999999999999999999999999997 8999999999875411     


Q ss_pred             CCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (405)
Q Consensus       144 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~  223 (405)
                      ... .. ....+.++..|.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.
T Consensus        75 ~~~-~~-~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~  152 (258)
T PRK06190         75 SAY-GA-QDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGI  152 (258)
T ss_pred             chh-hH-HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCH
Confidence            111 11 2234567788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHH
Q 015541          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQ  301 (405)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~  301 (405)
                      . .+++|++||++++ |+||+++||||+++|++++.+.+.++++......|.  ..+|++++.... ......++.+...
T Consensus       153 ~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~l~~~~~~e~~~  229 (258)
T PRK06190        153 G-RARRMSLTGDFLD-AADALRAGLVTEVVPHDELLPRARRLAASIAGNNPAAVRALKASYDDGAA-AQTGDALALEAEA  229 (258)
T ss_pred             H-HHHHHHHhCCccC-HHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc-CCHHHHHHHHHHH
Confidence            7 9999999999999 999999999999999999999999998875444332  334555544321 1112334445555


Q ss_pred             HHHHcCC
Q 015541          302 ITSCFSS  308 (405)
Q Consensus       302 i~~~f~~  308 (405)
                      +..+|.+
T Consensus       230 ~~~~~~s  236 (258)
T PRK06190        230 ARAHNRS  236 (258)
T ss_pred             HHHHHcC
Confidence            6666665

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2e-46  Score=359.07  Aligned_cols=247  Identities=22%  Similarity=0.301  Sum_probs=204.1

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      ++.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++....   ...
T Consensus         3 ~~~i~~~~-~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~---~~~   76 (257)
T PRK06495          3 MSQLKLEV-SDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAG-KVFCAGADLKGRPDVI---KGP   76 (257)
T ss_pred             cceEEEEe-eCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCcccCcCHHhHhhcc---CCc
Confidence            45677876 6899999999998 5999999999999999999999999999999997 8999999999875411   111


Q ss_pred             CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                      .....+....+++...+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++   |++++|+|++|..
T Consensus        77 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~  153 (257)
T PRK06495         77 GDLRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHS  153 (257)
T ss_pred             hhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHH
Confidence            1223344455677888999999999999999999999999999999999999999999999996   5678899999987


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQI  302 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i  302 (405)
                       ++++|++||++++ |+||+++||||++||++++.+.+.+++.......|.  ..+|+.++..... .....+..+....
T Consensus       154 -~a~~lll~g~~~~-a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~-~l~~~~~~e~~~~  230 (257)
T PRK06495        154 -LTRRMMLTGYRVP-AAELYRRGVIEACLPPEELMPEAMEIAREIASKSPLATRLAKDALNTIENM-SLRDGYRYEQDIT  230 (257)
T ss_pred             -HHHHHHHcCCeeC-HHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Confidence             9999999999999 999999999999999999999999998885444433  3445555443221 1123344455567


Q ss_pred             HHHcCCcccHHHHHHHHHhcc
Q 015541          303 TSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       303 ~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ..++.+++..|++-++++++.
T Consensus       231 ~~~~~s~d~~egi~af~~kr~  251 (257)
T PRK06495        231 AKLAKTEDAKEAQRAFLEKRP  251 (257)
T ss_pred             HHHhcChHHHHHHHHHhccCC
Confidence            778888878999999999887

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.1e-46  Score=354.64  Aligned_cols=243  Identities=18%  Similarity=0.199  Sum_probs=199.3

Q ss_pred             EEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCch
Q 015541           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (405)
Q Consensus        68 i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (405)
                      |..+..+++|++||||||++ |+||.+|+.+|.++++.++.|++||+|||||.| ++||+|+|++++...    ......
T Consensus         3 ~~~~~~~~~v~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G-~~F~aG~Dl~~~~~~----~~~~~~   76 (249)
T PRK07938          3 ITSTTPEPGIAEVTVDYPPV-NALPSAGWFALADAITAAGADPDTRVVVLRAEG-RGFNAGVDIKELQAT----PGFTAL   76 (249)
T ss_pred             eeecccCCCEEEEEECCCCc-ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCC-CceecCcCHHHHhhc----cchhHH
Confidence            33444578999999999985 999999999999999999999999999999997 899999999987531    111111


Q ss_pred             HHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHH
Q 015541          148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG  227 (405)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a  227 (405)
                      ..+......++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++   |++++|+|++|.. .+
T Consensus        77 ~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~-~a  152 (249)
T PRK07938         77 IDANRGCFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQH-LM  152 (249)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHH-HH
Confidence            2223344567788999999999999999999999999999999999999999999999985   6678899999987 99


Q ss_pred             HHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHH---HHHHHHHhcCCCCCcchhhhhHHHHHH
Q 015541          228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQD---IVALLAKYSSDPEGEAPLKLLLPQITS  304 (405)
Q Consensus       228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~---i~~~l~~~~~~~~~~~~l~~~~~~i~~  304 (405)
                      ++|++||++++ |+||+++|||+++||++++.+.+.+++.... ..|...   +|+.++.... ......+..+......
T Consensus       153 ~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la-~~~~~a~~~~K~~l~~~~~-~~l~~~~~~e~~~~~~  229 (249)
T PRK07938        153 RALFFTAATIT-AAELHHFGSVEEVVPRDQLDEAALEVARKIA-AKDTRVIRAAKEALNGIDP-QDVERSYRWEQGFTFE  229 (249)
T ss_pred             HHHHHhCCcCC-HHHHHHCCCccEEeCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHhhcc-CCHHHHHHHHHHHHHH
Confidence            99999999999 9999999999999999999999999998754 444434   4555544321 1112334555566778


Q ss_pred             HcCCcccHHHHHHHHHhcc
Q 015541          305 CFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       305 ~f~~~~~ve~i~~~Le~~~  323 (405)
                      +|.+++..|++.+++++++
T Consensus       230 ~~~~~d~~eg~~af~ekr~  248 (249)
T PRK07938        230 LNLAGVSDEHRDAFVEKRK  248 (249)
T ss_pred             HhcCccHHHHHHHHHhcCC
Confidence            8888888999999998875

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.1e-46  Score=354.04  Aligned_cols=236  Identities=17%  Similarity=0.251  Sum_probs=193.7

Q ss_pred             EEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCch
Q 015541           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (405)
Q Consensus        68 i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (405)
                      |.++. +++|++||||||+++|+||.+|+.+|.++++.++.| ++|+|||||.| ++||+|+|+++...          .
T Consensus         2 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g-~~F~aG~Dl~~~~~----------~   68 (243)
T PRK07854          2 IGVTR-DGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQG-TVFCAGADLSGDVY----------A   68 (243)
T ss_pred             ceEEE-eCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCC-CceecccCCccchh----------H
Confidence            45666 689999999999999999999999999999999865 89999999997 89999999985211          1


Q ss_pred             HHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHH
Q 015541          148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG  227 (405)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a  227 (405)
                      ..+....+.++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. .+
T Consensus        69 ~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~-~a  147 (243)
T PRK07854         69 DDFPDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGG-RA  147 (243)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHH-HH
Confidence            22444556778889999999999999999999999999999999999999999999999999999999999999987 99


Q ss_pred             HHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHcC
Q 015541          228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFS  307 (405)
Q Consensus       228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~i~~~f~  307 (405)
                      ++|++||++++ |+||+++|||+++++.+    .+.++++.. ...|...+...++.+.........+..+......+|.
T Consensus       148 ~~l~ltg~~~~-a~eA~~~Glv~~v~~~~----~a~~~a~~l-~~~~~~a~~~~K~~l~~~~~~~~~~~~e~~~~~~~~~  221 (243)
T PRK07854        148 RAMLLGAEKLT-AEQALATGMANRIGTLA----DAQAWAAEI-AGLAPLALQHAKRVLNDDGAIEEAWPAHKELFDKAWA  221 (243)
T ss_pred             HHHHHcCCCcC-HHHHHHCCCcccccCHH----HHHHHHHHH-HhCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhc
Confidence            99999999999 99999999999997632    566666653 3344434433333332222222334445567788898


Q ss_pred             CcccHHHHHHHHHhcc
Q 015541          308 SEKSVRQIIEELKKHQ  323 (405)
Q Consensus       308 ~~~~ve~i~~~Le~~~  323 (405)
                      +++..|++.++++++.
T Consensus       222 ~~d~~eg~~af~~kr~  237 (243)
T PRK07854        222 SQDAIEAQVARIEKRP  237 (243)
T ss_pred             CchHHHHHHHHhCCCC
Confidence            8888999999999886

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.4e-46  Score=353.36  Aligned_cols=239  Identities=24%  Similarity=0.295  Sum_probs=199.0

Q ss_pred             EEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCch
Q 015541           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (405)
Q Consensus        68 i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (405)
                      |.++. +++|++||||||+++|+||.+|+++|.++++.++.|++||+|||+|.| ++||+|+|++++....        .
T Consensus         2 i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~--------~   71 (248)
T PRK06072          2 IKVES-REGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEG-RAFCVGADLSEFAPDF--------A   71 (248)
T ss_pred             eEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCcccCcCHHHHhhhh--------H
Confidence            55665 689999999999999999999999999999999999999999999997 8999999999875411        1


Q ss_pred             HHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHH
Q 015541          148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG  227 (405)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a  227 (405)
                      ..+....+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|  .++
T Consensus        72 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g--~~a  149 (248)
T PRK06072         72 IDLRETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTG--QRF  149 (248)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhh--HHH
Confidence            223344566778899999999999999999999999999999999999999999999999999999999999999  379


Q ss_pred             HHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHHHH
Q 015541          228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQITSC  305 (405)
Q Consensus       228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~~~  305 (405)
                      +++++||++++ |+||+++||||++   +++.+.+.+++.+.....|.  ..+|++++..... .....++.+......+
T Consensus       150 ~~lll~g~~~~-a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~l~~~~~~e~~~~~~~  224 (248)
T PRK06072        150 YEILVLGGEFT-AEEAERWGLLKIS---EDPLSDAEEMANRISNGPFQSYIAAKRMINLVLYN-DLEEFLEYESAIQGYL  224 (248)
T ss_pred             HHHHHhCCccC-HHHHHHCCCcccc---chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHH
Confidence            99999999999 9999999999953   35677788888775443332  3445565543211 1123445556677889


Q ss_pred             cCCcccHHHHHHHHHhcc
Q 015541          306 FSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       306 f~~~~~ve~i~~~Le~~~  323 (405)
                      |.+++..|++.++++++.
T Consensus       225 ~~~~d~~eg~~af~~kr~  242 (248)
T PRK06072        225 GKTEDFKEGISSFKEKRE  242 (248)
T ss_pred             hCChhHHHHHHHHhcCCC
Confidence            999888999999999887

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7e-46  Score=355.90  Aligned_cols=248  Identities=23%  Similarity=0.270  Sum_probs=203.1

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      +..+.++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++....  ....
T Consensus         5 ~~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~--~~~~   80 (260)
T PRK07827          5 DTLVRYAV-DGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTG-GTFCAGADLSEAGGGG--GDPY   80 (260)
T ss_pred             CcceEEEe-eCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC-CCccCCcChHHHhhcc--cCch
Confidence            34577776 689999999999999999999999999999999999999999999997 8999999999875410  0111


Q ss_pred             CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                      .....++....+++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++++|+.| .
T Consensus        81 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~~-~  159 (260)
T PRK07827         81 DAAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSP-R  159 (260)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhhH-H
Confidence            112345566677888999999999999999999999999999999999999999999999999999999999999865 3


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH---HHHHHHHHHhcCCCCCcchhhhhHHH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH---QDIVALLAKYSSDPEGEAPLKLLLPQ  301 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~---~~i~~~l~~~~~~~~~~~~l~~~~~~  301 (405)
                       .+++|++||++++ |++|+++|||+++++  ++.+.+.+++++. +..|.   ..+|.+++..... .....++.+...
T Consensus       160 -~a~~l~l~g~~~~-a~eA~~~Glv~~v~~--~l~~~a~~~a~~l-a~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~  233 (260)
T PRK07827        160 -AAARYYLTGEKFG-AAEAARIGLVTAAAD--DVDAAVAALLADL-RRGSPQGLAESKALTTAAVLA-GFDRDAEELTEE  233 (260)
T ss_pred             -HHHHHHHhCCccC-HHHHHHcCCcccchH--HHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhhhcC-CHHHHHHHHHHH
Confidence             8999999999999 999999999999974  4888888888774 44444   3445555442111 112234445556


Q ss_pred             HHHHcCCcccHHHHHHHHHhcc
Q 015541          302 ITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       302 i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ...+|.+++..+++.++++++.
T Consensus       234 ~~~~~~~~~~~~~~~af~~kr~  255 (260)
T PRK07827        234 SARLFVSDEAREGMTAFLQKRP  255 (260)
T ss_pred             HHHHhcChhHHHHHHHHhcCCC
Confidence            7788888878899989998876

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=100.00  E-value=8.6e-47  Score=359.02  Aligned_cols=242  Identities=30%  Similarity=0.451  Sum_probs=210.2

Q ss_pred             EEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHH
Q 015541           70 GNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPK  149 (405)
Q Consensus        70 ~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~  149 (405)
                      |+. +++|++|+||||++.|+||.+|+++|.++|+.++.|+++++||++|.| ++||+|+|++++...     .......
T Consensus         2 ~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~-~~F~~G~Dl~~~~~~-----~~~~~~~   74 (245)
T PF00378_consen    2 YEI-EDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGG-KAFCAGADLKEFLNS-----DEEEARE   74 (245)
T ss_dssp             EEE-ETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEEST-SESBESB-HHHHHHH-----HHHHHHH
T ss_pred             EEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecc-cccccccchhhhhcc-----ccccccc
Confidence            555 699999999999999999999999999999999999999999998875 899999999999874     2234566


Q ss_pred             HHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHH
Q 015541          150 VFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAY  229 (405)
Q Consensus       150 ~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~  229 (405)
                      +....+.++..+..+|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. .+++
T Consensus        75 ~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-~a~~  153 (245)
T PF00378_consen   75 FFRRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPS-RARE  153 (245)
T ss_dssp             HHHHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHH-HHHH
T ss_pred             cchhhccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeecc-cccc
Confidence            788889999999999999999999999999999999999999999999999999999999999999999999986 9999


Q ss_pred             HHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHHHHcC
Q 015541          230 LGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQITSCFS  307 (405)
Q Consensus       230 l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~~~f~  307 (405)
                      +++||++++ |+||+++||||+++|++++.+.+.++++......|.  ..+|+.+++... ......+......+.+++.
T Consensus       154 l~l~g~~~~-a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~-~~~~~~~~~~~~~~~~~~~  231 (245)
T PF00378_consen  154 LLLTGEPIS-AEEALELGLVDEVVPDEELDEEALELAKRLAAKPPSALRATKKALNRALE-QSLEEALEFEQDLFAECFK  231 (245)
T ss_dssp             HHHHTCEEE-HHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHT
T ss_pred             cccccccch-hHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHcC
Confidence            999999999 999999999999999999999999999885444333  445555555311 1112345556678999999


Q ss_pred             CcccHHHHHHHHHh
Q 015541          308 SEKSVRQIIEELKK  321 (405)
Q Consensus       308 ~~~~ve~i~~~Le~  321 (405)
                      +++..|++.+++||
T Consensus       232 ~~~~~e~~~~f~eK  245 (245)
T PF00378_consen  232 SEDFQEGIAAFLEK  245 (245)
T ss_dssp             SHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHhCc
Confidence            99889999998875

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.4e-45  Score=351.66  Aligned_cols=238  Identities=17%  Similarity=0.212  Sum_probs=198.2

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      +..+.++. +++|++|+||||+++|+||.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|++++....   .. 
T Consensus         4 ~~~~~~~~-~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~---~~-   77 (249)
T PRK07110          4 KVVELREV-EEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYP-NYFATGGTQEGLLSLQ---TG-   77 (249)
T ss_pred             CceEEEEe-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCeeCCcChHHHhhcc---ch-
Confidence            45577776 689999999999999999999999999999999999999999999997 8999999999875411   11 


Q ss_pred             CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                         ...+.. ..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus        78 ---~~~~~~-~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~  153 (249)
T PRK07110         78 ---KGTFTE-ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLA  153 (249)
T ss_pred             ---hhhHhh-HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHH
Confidence               112222 5678889999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHH---HHHHHHHhcCCCCCcchhhhhHHH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQD---IVALLAKYSSDPEGEAPLKLLLPQ  301 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~---i~~~l~~~~~~~~~~~~l~~~~~~  301 (405)
                       .+++|++||++++ |+||+++|||+++||++++.+.+.++++.. +..|...   +|+.++..... .....++.+...
T Consensus       154 -~a~~llltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l-a~~~~~a~~~~K~~l~~~~~~-~l~~~~~~e~~~  229 (249)
T PRK07110        154 -LGQEMLLTARYYR-GAELKKRGVPFPVLPRAEVLEKALELARSL-AEKPRHSLVLLKDHLVADRRR-RLPEVIEQEVAM  229 (249)
T ss_pred             -HHHHHHHcCCccC-HHHHHHcCCCeEEeChHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhhhc-cHHHHHHHHHHH
Confidence             9999999999999 999999999999999999999999998874 4444434   45555443222 223345556666


Q ss_pred             HHHHcCCcccHHHHH
Q 015541          302 ITSCFSSEKSVRQII  316 (405)
Q Consensus       302 i~~~f~~~~~ve~i~  316 (405)
                      +..+|.+++..|++.
T Consensus       230 ~~~~~~~~~~~egi~  244 (249)
T PRK07110        230 HEKTFHQPEVKRRIE  244 (249)
T ss_pred             HHHHhCCHhHHHHHH
Confidence            778888875555443

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=100.00  E-value=1.3e-45  Score=352.25  Aligned_cols=239  Identities=16%  Similarity=0.213  Sum_probs=192.7

Q ss_pred             EEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCch
Q 015541           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (405)
Q Consensus        68 i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (405)
                      |.+++ +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..        ...
T Consensus         3 v~~~~-~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g-~~FcaG~Dl~~~~~--------~~~   71 (251)
T TIGR03189         3 VWLER-DGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEG-PHFSFGASVAEHMP--------DQC   71 (251)
T ss_pred             EEEEe-eCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCC-CceecCcChhhhCc--------hhH
Confidence            55665 5899999999997 5999999999999999999999999999999997 79999999997531        111


Q ss_pred             HHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHH
Q 015541          148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG  227 (405)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a  227 (405)
                      ..++....+++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|+ |++++|+|++|.. .+
T Consensus        72 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~-~~~~~l~~~vg~~-~a  149 (251)
T TIGR03189        72 AAMLASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAP-AASCLLPERMGRV-AA  149 (251)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCC-chHHHHHHHhCHH-HH
Confidence            234555567888999999999999999999999999999999999999999999999999997 5678999999997 99


Q ss_pred             HHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHH---HHHHHHhcCCCCCcchh-hhhHHHHH
Q 015541          228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDI---VALLAKYSSDPEGEAPL-KLLLPQIT  303 (405)
Q Consensus       228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i---~~~l~~~~~~~~~~~~l-~~~~~~i~  303 (405)
                      ++|+|||++++ |+||+++|||++++|+.+  +.+.+++...+...|+.++   |++++....... ...+ ..+...+.
T Consensus       150 ~~l~ltg~~~~-a~eA~~~Glv~~v~~~~~--~~a~~~~a~~la~~~p~a~~~~K~~l~~~~~~~~-~~~~~~~e~~~~~  225 (251)
T TIGR03189       150 EDLLYSGRSID-GAEGARIGLANAVAEDPE--NAALAWFDEHPAKLSASSLRFAVRAARLGMNERV-KAKIAEVEALYLE  225 (251)
T ss_pred             HHHHHcCCCCC-HHHHHHCCCcceecCcHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcccH-HHHHHHHHHHHHH
Confidence            99999999999 999999999999998543  3444543223445454344   455543321111 1122 23445577


Q ss_pred             HHcCCcccHHHHHHHHHhcc
Q 015541          304 SCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       304 ~~f~~~~~ve~i~~~Le~~~  323 (405)
                      .+|.+++..|++.++++++.
T Consensus       226 ~~~~s~d~~eg~~af~ekr~  245 (251)
T TIGR03189       226 ELMATHDAVEGLNAFLEKRP  245 (251)
T ss_pred             HHhCCHhHHHHHHHHHhcCC
Confidence            88988888999999999987

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PRK08321 naphthoate synthase; Validated

Probab=100.00  E-value=1.4e-45  Score=360.88  Aligned_cols=255  Identities=17%  Similarity=0.140  Sum_probs=203.4

Q ss_pred             CccEEEEEe-eCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCC------CCcccCCChhhHHHh
Q 015541           65 EEFVKGNVH-PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGP------RAFCAGMDIKGVVAE  137 (405)
Q Consensus        65 ~~~i~~~~~-~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~------~~FcaG~Dl~~~~~~  137 (405)
                      +..|.++.. +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.|+      ++||+|+|++++...
T Consensus        22 ~~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~  101 (302)
T PRK08321         22 FTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRD  101 (302)
T ss_pred             ceeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccc
Confidence            334777752 4789999999999999999999999999999999999999999999974      699999999976321


Q ss_pred             hh--hCCCC-C--chHHH-HHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEe-CCeeeeCccccccccCC
Q 015541          138 IQ--KDRNT-P--LVPKV-FTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT-EKTLLAMPENGIGLFPD  210 (405)
Q Consensus       138 ~~--~~~~~-~--~~~~~-~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riat-e~a~f~~PE~~iGl~P~  210 (405)
                      ..  ..... .  ....+ ....+.+...+..+||||||+|||+|+|||++|+++||||||+ ++++|++||+++|++|+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~  181 (302)
T PRK08321        102 GYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDG  181 (302)
T ss_pred             cccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCC
Confidence            00  00000 0  00011 1112346667899999999999999999999999999999999 69999999999999999


Q ss_pred             ccHHHHHhcCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCC
Q 015541          211 VGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSD  288 (405)
Q Consensus       211 ~G~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~  288 (405)
                      +|++++|+|++|.. .+++|+|||+.++ |+||+++|||+++||++++.+.+.++++......|.  ..+|++++.....
T Consensus       182 ~~~~~~L~r~vG~~-~A~~l~ltG~~~~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~  259 (302)
T PRK08321        182 GYGSAYLARQVGQK-FAREIFFLGRTYS-AEEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAMRMLKYAFNLTDDG  259 (302)
T ss_pred             chHHHHHHHHhCHH-HHHHHHHcCCccC-HHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc
Confidence            99999999999986 9999999999999 999999999999999999999999999885444433  3445555443221


Q ss_pred             CCCcchhhhhHHHHHHHcCCcccHHHHHHHHHhcc
Q 015541          289 PEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       289 ~~~~~~l~~~~~~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                        .......+......+|.+++..+++.++++++.
T Consensus       260 --~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~  292 (302)
T PRK08321        260 --LVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRD  292 (302)
T ss_pred             --cHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCC
Confidence              112222345567788888888999999999886

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-45  Score=360.54  Aligned_cols=256  Identities=17%  Similarity=0.156  Sum_probs=200.1

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHh----hhh
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAE----IQK  140 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~----~~~  140 (405)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||+| ++||+|+||++....    ...
T Consensus         4 ~~~v~~~~-~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G-~~FcaG~Dl~~~~~~~~~~~~~   81 (298)
T PRK12478          4 FQTLLYTT-AGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAG-RAFSGGYDFGGGFQHWGEAMMT   81 (298)
T ss_pred             ceEEEEec-cCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccCcCccccccccchhccc
Confidence            45677876 689999999999999999999999999999999999999999999997 899999999862210    000


Q ss_pred             CCCCCchHHH---HHHH---HHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccc-cccCCccH
Q 015541          141 DRNTPLVPKV---FTAE---YSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGI-GLFPDVGF  213 (405)
Q Consensus       141 ~~~~~~~~~~---~~~~---~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~i-Gl~P~~G~  213 (405)
                      .........+   ....   ..++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++ |++|  |+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~--~~  159 (298)
T PRK12478         82 DGRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL--TG  159 (298)
T ss_pred             ccccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--hh
Confidence            0000111111   1111   234567899999999999999999999999999999999999999999997 8885  34


Q ss_pred             HHHHhcCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCC
Q 015541          214 SYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEG  291 (405)
Q Consensus       214 ~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~  291 (405)
                      ++ + +.+|.. ++++|+|||++|+ |+||+++||||++||++++.+.+.+++.+.....|.  ...|.+++........
T Consensus       160 ~~-~-~~vG~~-~A~~llltg~~i~-A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~l  235 (298)
T PRK12478        160 MW-L-YRLSLA-KVKWHSLTGRPLT-GVQAAEAELINEAVPFERLEARVAEVATELARIPLSQLQAQKLIVNQAYENMGL  235 (298)
T ss_pred             HH-H-HHhhHH-HHHHHHHcCCccC-HHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcch
Confidence            44 2 458986 9999999999999 999999999999999999999999999885444333  3456666543221212


Q ss_pred             cchhhhhHHHHHHHcCCcccH--------HHHHHHHHhccCCccchhhHHHH
Q 015541          292 EAPLKLLLPQITSCFSSEKSV--------RQIIEELKKHQSSAETSVAQWAD  335 (405)
Q Consensus       292 ~~~l~~~~~~i~~~f~~~~~v--------e~i~~~Le~~~~~~~~~~~~wa~  335 (405)
                      ...+..+......++.+++..        |++-++++|+.       ++|..
T Consensus       236 ~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~-------p~f~~  280 (298)
T PRK12478        236 ASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRD-------GPFGD  280 (298)
T ss_pred             hHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcC-------Ccccc
Confidence            345566666788888888665        59999999997       66754

>PRK05869 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=2.6e-45  Score=343.94  Aligned_cols=208  Identities=19%  Similarity=0.252  Sum_probs=179.7

Q ss_pred             CccEEEEEe----eCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhh
Q 015541           65 EEFVKGNVH----PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQK  140 (405)
Q Consensus        65 ~~~i~~~~~----~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~  140 (405)
                      +++|.++..    +++|++||||||++ |+||.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++....  
T Consensus         2 ~~~~~~~~~~~~~~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~--   77 (222)
T PRK05869          2 NEFVNVVVSDGSQDAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGH-EIFSAGDDMPELRTLS--   77 (222)
T ss_pred             ccchhhhcccCcccCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcCcCcCHHHHhccC--
Confidence            344555542    58999999999986 999999999999999999999999999999987 8999999999875411  


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcC
Q 015541          141 DRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG  220 (405)
Q Consensus       141 ~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~  220 (405)
                         ......++....+++.+|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|+
T Consensus        78 ---~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~  154 (222)
T PRK05869         78 ---AQEADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRA  154 (222)
T ss_pred             ---hhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHH
Confidence               11122334445678889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHH
Q 015541          221 PGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALL  282 (405)
Q Consensus       221 ~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l  282 (405)
                      +|.. .++++++||++++ |+||+++||||+++|++++.+.+.++++.... .|..++..++
T Consensus       155 ig~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~-~~~~a~~~~K  213 (222)
T PRK05869        155 AGPS-RAKELVFSGRFFD-AEEALALGLIDEMVAPDDVYDAAAAWARRFLD-GPPHALAAAK  213 (222)
T ss_pred             hCHH-HHHHHHHcCCCcC-HHHHHHCCCCCEeeCchHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence            9986 9999999999999 99999999999999999999999999987544 4443443333

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.2e-44  Score=346.36  Aligned_cols=245  Identities=18%  Similarity=0.200  Sum_probs=196.7

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      ++.+.++. +++|++||||||++.|+||.+|+.+|.++++.++  +++|+|||+|.| ++||+|+|++++....   ...
T Consensus         3 ~~~i~~~~-~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g-~~FsaG~Dl~~~~~~~---~~~   75 (255)
T PRK07112          3 YQTIRVRQ-QGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLP-EVFCFGADFSAIAEKP---DAG   75 (255)
T ss_pred             CceEEEEe-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCC-CCcccCcCHHHHhhcc---ccc
Confidence            45688887 6899999999999999999999999999999998  369999999997 8999999999875411   111


Q ss_pred             CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                      ..........+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++| +.+|++++|..
T Consensus        76 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~  154 (255)
T PRK07112         76 RADLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQ  154 (255)
T ss_pred             hhhhhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHH
Confidence            11111233445778889999999999999999999999999999999999999999999999999875 46799999997


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQI  302 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i  302 (405)
                       ++++|++||++++ |+||+++||||++||+++.  .+.+++++.....|.  ..+|..++....  .....++.+....
T Consensus       155 -~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~~--~~~~~a~~l~~~~p~a~~~~K~~~~~~~~--~~~~~~~~e~~~~  228 (255)
T PRK07112        155 -KAHYMTLMTQPVT-AQQAFSWGLVDAYGANSDT--LLRKHLLRLRCLNKAAVARYKSYASTLDD--TVAAARPAALAAN  228 (255)
T ss_pred             -HHHHHHHhCCccc-HHHHHHcCCCceecCcHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHhhh--hHHHHHHHHHHHH
Confidence             9999999999999 9999999999999997553  456666553333332  445666654311  1223445555667


Q ss_pred             HHHcCCcccHHHHHHHHHhcc
Q 015541          303 TSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       303 ~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ..+|.+++..|++.++++++.
T Consensus       229 ~~~~~~~~~~eg~~af~~kr~  249 (255)
T PRK07112        229 IEMFADPENLRKIARYVETGK  249 (255)
T ss_pred             HHHHcChHHHHHHHHHHcCCC
Confidence            788888888999999999886

>PRK08788 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=2e-43  Score=342.19  Aligned_cols=238  Identities=13%  Similarity=0.112  Sum_probs=186.4

Q ss_pred             CccEEEEE-eeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEeeCCCCCcccCCChhhHHHhh
Q 015541           65 EEFVKGNV-HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWES-----DPRVKCVLIEGSGPRAFCAGMDIKGVVAEI  138 (405)
Q Consensus        65 ~~~i~~~~-~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~-----d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~  138 (405)
                      +..++++. .+++|++|||| |+++|+||.+|+.+|.+++++++.     |++||+|||+|.|++.||+|+|++++....
T Consensus        14 ~~~~~i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~   92 (287)
T PRK08788         14 LSQLRVYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELI   92 (287)
T ss_pred             cCceEEEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhc
Confidence            44555544 36789999996 999999999999999999999998     899999999999558999999999875311


Q ss_pred             hhCCCCCchHHHHHHHHHHHHHHH---hCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHH
Q 015541          139 QKDRNTPLVPKVFTAEYSLICKIS---EYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY  215 (405)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~l~~~i~---~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~  215 (405)
                       ..........+....+..+..+.   .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++
T Consensus        93 -~~~~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~  171 (287)
T PRK08788         93 -RAGDRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYS  171 (287)
T ss_pred             -cccchHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHH
Confidence             01111111122233333334343   79999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCC-CcHHHHHHHHHHhcCCCCCcch
Q 015541          216 IAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSE-DPHQDIVALLAKYSSDPEGEAP  294 (405)
Q Consensus       216 ~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~  294 (405)
                      +|+|++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.+++.+.... .+...++..++...... ....
T Consensus       172 ~l~~~vG~~-~A~ellltG~~l~-A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~~~~~~~a~k~~~~~~~~~~-~~~~  248 (287)
T PRK08788        172 FLARRVGPK-LAEELILSGKLYT-AEELHDMGLVDVLVEDGQGEAAVRTFIRKSKRKLNGWRAMLRARRRVNPLS-LEEL  248 (287)
T ss_pred             HHHHHhhHH-HHHHHHHcCCCCC-HHHHHHCCCCcEecCchHHHHHHHHHHHHHhcCccHHHHHHHHHHhhccCC-HHHH
Confidence            999999997 9999999999999 999999999999999999999999999885443 23356777766553321 1223


Q ss_pred             hhhhHHHHHHHcC
Q 015541          295 LKLLLPQITSCFS  307 (405)
Q Consensus       295 l~~~~~~i~~~f~  307 (405)
                      +..+....+.++.
T Consensus       249 ~~~~~~~~~~~~~  261 (287)
T PRK08788        249 MDITEIWVDAALQ  261 (287)
T ss_pred             HHHHHHHHHHHhh
Confidence            3334344554443

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.3e-43  Score=342.94  Aligned_cols=214  Identities=21%  Similarity=0.288  Sum_probs=177.4

Q ss_pred             CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCC-
Q 015541           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR-  142 (405)
Q Consensus        64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~-  142 (405)
                      +++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++........ 
T Consensus         2 ~~~~v~~~~-~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G-~~FcaG~Dl~~~~~~~~~~~~   79 (288)
T PRK08290          2 EYEYVRYEV-AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAG-KHFSAGHDLGSGTPGRDRDPG   79 (288)
T ss_pred             CCceEEEEe-eCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CccccCCCccccccccccccc
Confidence            356688887 689999999999999999999999999999999999999999999997 89999999998642110000 


Q ss_pred             -------------CCC---chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCcccccc
Q 015541          143 -------------NTP---LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIG  206 (405)
Q Consensus       143 -------------~~~---~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iG  206 (405)
                                   ...   ...........++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lG  159 (288)
T PRK08290         80 PDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMG  159 (288)
T ss_pred             cccccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccC
Confidence                         000   0111122334566789999999999999999999999999999999999999999999999


Q ss_pred             ccCCccHHHHHhcCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHH---HHHHHH
Q 015541          207 LFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQD---IVALLA  283 (405)
Q Consensus       207 l~P~~G~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~---i~~~l~  283 (405)
                      + |+ ++++++++++|.. .+++|+|||+.++ |+||+++||||++||++++.+.+.+++... ...|...   +|..++
T Consensus       160 l-~~-~~~~~l~~~iG~~-~A~~llltG~~i~-A~eA~~~GLV~~vv~~~~l~~~a~~~a~~l-a~~~~~a~~~~K~~~~  234 (288)
T PRK08290        160 I-PG-VEYFAHPWELGPR-KAKELLFTGDRLT-ADEAHRLGMVNRVVPRDELEAETLELARRI-AAMPPFGLRLTKRAVN  234 (288)
T ss_pred             c-Cc-chHHHHHHHhhHH-HHHHHHHcCCCCC-HHHHHHCCCccEeeCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHH
Confidence            8 54 4577789999987 9999999999999 999999999999999999999999999875 4444434   455554


Q ss_pred             H
Q 015541          284 K  284 (405)
Q Consensus       284 ~  284 (405)
                      .
T Consensus       235 ~  235 (288)
T PRK08290        235 Q  235 (288)
T ss_pred             H
Confidence            3

>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=8.2e-44  Score=318.56  Aligned_cols=248  Identities=18%  Similarity=0.263  Sum_probs=207.8

Q ss_pred             ccEEEEE---eeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCC
Q 015541           66 EFVKGNV---HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (405)
Q Consensus        66 ~~i~~~~---~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (405)
                      ..|.++.   .+.||.+|-+|||.+.|+|+..|+++|.++++++..|+.+|+|+|++.-++.||+|+|+|+-..     .
T Consensus        27 ~Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~-----M  101 (291)
T KOG1679|consen   27 NEVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKT-----M  101 (291)
T ss_pred             ceeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhc-----C
Confidence            3466654   4468999999999999999999999999999999999999999999998999999999999776     4


Q ss_pred             CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCC
Q 015541          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (405)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G  222 (405)
                      ++.++..|......++..|.++|.|+||+|+|.++|||++++++||+|||+++++|+++|++++++|+.|+|++|+|++|
T Consensus       102 s~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg  181 (291)
T KOG1679|consen  102 SPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVG  181 (291)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHh
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCCCCcHHHHHHcCccceecCCC----ChHHHHHHHHHhhcCCCcHHHHHHHHHHhcCCCCCcchhhhh
Q 015541          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSG----NLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLL  298 (405)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~----~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~  298 (405)
                      .. ++++|++||+.++ +.||...|||+|+|...    .....+.+++++.+.+.|. +++-.+...+...+  ..+...
T Consensus       182 ~a-laKELIftarvl~-g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~gPi-avr~aKlAIn~G~e--vdiasg  256 (291)
T KOG1679|consen  182 VA-LAKELIFTARVLN-GAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQGPI-AVRLAKLAINLGME--VDIASG  256 (291)
T ss_pred             HH-HHHhHhhhheecc-chhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCCch-hhhHHHHHhccCce--eccccc
Confidence            96 9999999999999 89999999999999876    4556677788887777775 34433333322222  222222


Q ss_pred             HHHHHHHcC----CcccHHHHHHHHHhcc
Q 015541          299 LPQITSCFS----SEKSVRQIIEELKKHQ  323 (405)
Q Consensus       299 ~~~i~~~f~----~~~~ve~i~~~Le~~~  323 (405)
                      +..=+.|+.    ..|.+|++.++-+++.
T Consensus       257 l~iEe~CYaq~i~t~drLeglaaf~ekr~  285 (291)
T KOG1679|consen  257 LSIEEMCYAQIIPTKDRLEGLAAFKEKRK  285 (291)
T ss_pred             ccHHHHHHHhcCcHHHHHHHHHHHHhhcC
Confidence            222234443    3357888888888776

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=100.00  E-value=1.6e-42  Score=339.71  Aligned_cols=188  Identities=21%  Similarity=0.209  Sum_probs=167.5

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (405)
Q Consensus        77 v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (405)
                      +++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.|+++||+|+|++++.....  ........++...++
T Consensus        38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~--~~~~~~~~~~~~~~~  115 (360)
T TIGR03200        38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYA--GNPQEYRQYMRLFND  115 (360)
T ss_pred             EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcc--cChhHHHHHHHHHHH
Confidence            566999999999999999999999999999999999999999998679999999998765211  111223445555567


Q ss_pred             HHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCCC
Q 015541          157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKR  236 (405)
Q Consensus       157 l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~~  236 (405)
                      ++..|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. +++++++||++
T Consensus       116 l~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~-rA~~llltGe~  194 (360)
T TIGR03200       116 MVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCE-QAMVSGTLCEP  194 (360)
T ss_pred             HHHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHH-HHHHHHHhCCc
Confidence            88899999999999999999999999999999999999999999999999999999999999999997 99999999999


Q ss_pred             CCcHHHHHHcCccceecCCCCh------------HHHHHHHHHh
Q 015541          237 ISTPSDALFAGLGTDYVPSGNL------------GSLKEALLAV  268 (405)
Q Consensus       237 i~~a~eA~~~GLv~~vv~~~~l------------~~~~~~l~~~  268 (405)
                      ++ |+||+++|||+++||+.++            ++..+++.+.
T Consensus       195 ~s-A~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~  237 (360)
T TIGR03200       195 WS-AHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRI  237 (360)
T ss_pred             Cc-HHHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHH
Confidence            99 9999999999999999887            6666666654

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=7.4e-43  Score=362.51  Aligned_cols=250  Identities=15%  Similarity=0.084  Sum_probs=203.7

Q ss_pred             CccEEEEE-eeCcEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHh-cCCCceEEEEeeCCCCC-cccC
Q 015541           65 EEFVKGNV-HPNGVAVITLDRPKAL-------------NAMNLDMDIKYKSFLDEWE-SDPRVKCVLIEGSGPRA-FCAG  128 (405)
Q Consensus        65 ~~~i~~~~-~~~~v~~ItLnrp~~~-------------Nal~~~m~~~L~~~l~~~~-~d~~v~~vvl~g~g~~~-FcaG  128 (405)
                      +.+|.+.. .+++|++||||||+++             |+||.+|+.+|.+++..++ +|++||+|||||.| ++ ||+|
T Consensus       255 ~~~~~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G-~~~F~aG  333 (546)
T TIGR03222       255 YPTVDVAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQG-DAELVLA  333 (546)
T ss_pred             eeeEEEEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCC-CCceecC
Confidence            44555543 3689999999999999             9999999999999999998 46999999999997 66 9999


Q ss_pred             CChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEE-CCcccccc-ceecccccEEEE-------eCCeeee
Q 015541          129 MDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLM-DGVTMGFG-IGISGHGRYRIV-------TEKTLLA  199 (405)
Q Consensus       129 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v-~G~a~GgG-~~lal~~D~ria-------te~a~f~  199 (405)
                      +|++....     .........+.....++..|..+|||+||+| ||+|+||| ++|+++||+|||       +++++|+
T Consensus       334 ~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~  408 (546)
T TIGR03222       334 ADALLEAH-----KDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAIT  408 (546)
T ss_pred             cCcccccc-----ccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEe
Confidence            99983211     1111112233333457788999999999999 89999999 999999999999       8999999


Q ss_pred             CccccccccCCccHHHHHhcCC-ChHHHH--HHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH-
Q 015541          200 MPENGIGLFPDVGFSYIAAKGP-GGGSVG--AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH-  275 (405)
Q Consensus       200 ~PE~~iGl~P~~G~~~~L~r~~-G~~~~a--~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~-  275 (405)
                      +||+++|++|++|++++|+|++ |.. ++  +++++||++|+ |+||+++|||++++|++++.+.+.+++++.....|. 
T Consensus       409 ~~e~~lGl~p~~gg~~~L~~~v~G~~-~a~~~~~~ltg~~i~-A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a  486 (546)
T TIGR03222       409 LSELNFGLYPMVNGLSRLATRFYAEP-APVAAVRDKIGQALD-AEEAERLGLVTAAPDDIDWEDEIRIALEERASFSPDA  486 (546)
T ss_pred             CCccccccCCCcCcHHHHHHHhcCch-hHHHHHHHHhCCCCC-HHHHHHcCCcccccCchHHHHHHHHHHHHHHhcCHHH
Confidence            9999999999999999999998 875 77  55999999999 999999999999999999999999999885554443 


Q ss_pred             -HHHHHHHHHhcCCCCCcch-hhhhHHHHHHHcCCcccHH---HHHHHHHhcc
Q 015541          276 -QDIVALLAKYSSDPEGEAP-LKLLLPQITSCFSSEKSVR---QIIEELKKHQ  323 (405)
Q Consensus       276 -~~i~~~l~~~~~~~~~~~~-l~~~~~~i~~~f~~~~~ve---~i~~~Le~~~  323 (405)
                       ..+|+.++.-..... +.. +..+...+..+|.++|..|   ++-++++|++
T Consensus       487 ~~~~K~~l~~~~~~~~-~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~  538 (546)
T TIGR03222       487 LTGLEANLRFAGPETM-ETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSGKK  538 (546)
T ss_pred             HHHHHHHHhhcCCcCh-hhhHHHHHHHHHHHHhcCCcccchhhHHHHHccCCC
Confidence             334444433222222 233 5666777999999998999   8999999998

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=1.8e-42  Score=373.30  Aligned_cols=251  Identities=17%  Similarity=0.235  Sum_probs=207.3

Q ss_pred             cEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCc
Q 015541           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (405)
Q Consensus        67 ~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (405)
                      .+.++..+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||+| ++||+|+|++++....  ......
T Consensus         7 ~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~--~~~~~~   83 (715)
T PRK11730          7 TLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAK-DAFIVGADITEFLSLF--AAPEEE   83 (715)
T ss_pred             eEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCC-CccccCcCHHHHhhhc--cCCHHH
Confidence            4666654689999999999999999999999999999999999999999999997 7999999999876421  011112


Q ss_pred             hHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHH
Q 015541          147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV  226 (405)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~  226 (405)
                      ...++...+.++..|..+|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. .
T Consensus        84 ~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~-~  162 (715)
T PRK11730         84 LSQWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGAD-N  162 (715)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHH-H
Confidence            334556667788899999999999999999999999999999999999999999999999999999999999999987 9


Q ss_pred             HHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCC------------CcH-----------HHHHH---
Q 015541          227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSE------------DPH-----------QDIVA---  280 (405)
Q Consensus       227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~------------~~~-----------~~i~~---  280 (405)
                      +++|++||++++ |+||+++||||++||++++.+.+.+++......            .|.           ...|+   
T Consensus       163 A~~llltG~~~~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~p~a~~~~~~~~~~~~~k~~~~  241 (715)
T PRK11730        163 ALEWIAAGKDVR-AEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKARRQPKLEPLKLSKIEAMMSFTTAKGMVA  241 (715)
T ss_pred             HHHHHHcCCcCC-HHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCccccccCcccccccccchhHHHHHHHHHHHHH
Confidence            999999999999 999999999999999999999999888764322            121           22232   


Q ss_pred             ---------------HHHHhcCCCCCcchhhhhHHHHHHHcCCcccHHHHHHHHHhcc
Q 015541          281 ---------------LLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       281 ---------------~l~~~~~~~~~~~~l~~~~~~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                                     .++... .......++.+...+..++.+++..+.+-++++++.
T Consensus       242 ~~~~~~~pa~~~~~~~i~~~~-~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~  298 (715)
T PRK11730        242 QKAGKHYPAPMTAVKTIEAAA-GLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQY  298 (715)
T ss_pred             HhhccCCccHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence                           122211 111234455667778899999988999999988764

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-42  Score=339.50  Aligned_cols=213  Identities=21%  Similarity=0.265  Sum_probs=177.2

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhC--C
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD--R  142 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~--~  142 (405)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.| ++||+|+|++++.......  .
T Consensus         9 ~~~v~~e~-~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G-~~FcaG~Dl~~~~~~~~~~~~~   86 (302)
T PRK08272          9 LKTMTYEV-TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAG-KGFCAGYDLSAYAEGSSSGGGG   86 (302)
T ss_pred             CCeEEEEe-ECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CCcccCcCHHHHhhcccccccc
Confidence            56688887 689999999999999999999999999999999999999999999998 8999999999986421100  0


Q ss_pred             C----------------CCchH--HHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCcccc
Q 015541          143 N----------------TPLVP--KVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG  204 (405)
Q Consensus       143 ~----------------~~~~~--~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~  204 (405)
                      .                .....  .++...+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~  166 (302)
T PRK08272         87 GAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTR  166 (302)
T ss_pred             cccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchh
Confidence            0                00001  23455567788899999999999999999999999999999999999999999999


Q ss_pred             ccccCCccHHHHHhcCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHH
Q 015541          205 IGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALL  282 (405)
Q Consensus       205 iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l  282 (405)
                      +|.+|..   ..+++++|.. ++++|+|||++|+ |+||+++||||++||++++.+.+.++++......|.  ...|.++
T Consensus       167 ~gg~~~~---~~~~~~vG~~-~A~~llltG~~i~-a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~~~~a~~~~K~~l  241 (302)
T PRK08272        167 VWGVPAT---GMWAYRLGPQ-RAKRLLFTGDCIT-GAQAAEWGLAVEAVPPEELDERTERLVERIAAVPVNQLAMVKLAV  241 (302)
T ss_pred             cccCChH---HHHHHHhhHH-HHHHHHHcCCccC-HHHHHHcCCCceecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            8666643   3567889986 9999999999999 999999999999999999999999998874443332  3345555


Q ss_pred             HH
Q 015541          283 AK  284 (405)
Q Consensus       283 ~~  284 (405)
                      +.
T Consensus       242 ~~  243 (302)
T PRK08272        242 NS  243 (302)
T ss_pred             HH
Confidence            44

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=9.3e-43  Score=362.81  Aligned_cols=251  Identities=14%  Similarity=0.077  Sum_probs=204.4

Q ss_pred             CccEEEEE-eeCcEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHhc-CCCceEEEEeeCCCCCcccCC
Q 015541           65 EEFVKGNV-HPNGVAVITLDRPKAL-------------NAMNLDMDIKYKSFLDEWES-DPRVKCVLIEGSGPRAFCAGM  129 (405)
Q Consensus        65 ~~~i~~~~-~~~~v~~ItLnrp~~~-------------Nal~~~m~~~L~~~l~~~~~-d~~v~~vvl~g~g~~~FcaG~  129 (405)
                      +.++.++. .+++|++||||||+++             |+||.+|+.+|.++++.++. |++||+|||||+|+++||+|+
T Consensus       259 ~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~  338 (550)
T PRK08184        259 YRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAA  338 (550)
T ss_pred             eEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCC
Confidence            44455554 2578999999999998             68999999999999999986 799999999999745999999


Q ss_pred             ChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEEC-Ccccccc-ceecccccEEEEe-------CCeeeeC
Q 015541          130 DIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMD-GVTMGFG-IGISGHGRYRIVT-------EKTLLAM  200 (405)
Q Consensus       130 Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~-G~a~GgG-~~lal~~D~riat-------e~a~f~~  200 (405)
                      |++.+..     .........+.....++..|..+||||||+|| |+|+||| ++|+++||+|||+       ++++|++
T Consensus       339 Dl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~  413 (550)
T PRK08184        339 DATLLAH-----KDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITL  413 (550)
T ss_pred             Chhhhcc-----cchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEEC
Confidence            9873211     11101122333344577889999999999997 9999999 9999999999999       9999999


Q ss_pred             ccccccccCCccHHHHHhcC-CChHHHHHHH--HhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--
Q 015541          201 PENGIGLFPDVGFSYIAAKG-PGGGSVGAYL--GMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--  275 (405)
Q Consensus       201 PE~~iGl~P~~G~~~~L~r~-~G~~~~a~~l--~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--  275 (405)
                      ||+++|++|++|++++|+|+ +|.. +++++  ++||++|+ |++|+++||||++||++++.+.+.+++++.....|.  
T Consensus       414 pe~~~Gl~p~~gg~~~L~r~~vG~~-~A~~~~l~~tg~~i~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a~  491 (550)
T PRK08184        414 SALNFGLYPMVNGLSRLARRFYGEP-DPLAAVRAKIGQPLD-ADAAEELGLVTAAPDDIDWEDEVRIALEERASLSPDAL  491 (550)
T ss_pred             ccccccCCCCCCcHHHhHHHhcChH-HHHHHHHHHhCCcCC-HHHHHHcCCcccccChHHHHHHHHHHHHHHHhCCHHHH
Confidence            99999999999999999988 6986 88887  59999999 999999999999999999999999999885554443  


Q ss_pred             HHHHHHHHHhcCCCCCcch-hhhhHHHHHHHcCCcccHH---HHHHHHHhcc
Q 015541          276 QDIVALLAKYSSDPEGEAP-LKLLLPQITSCFSSEKSVR---QIIEELKKHQ  323 (405)
Q Consensus       276 ~~i~~~l~~~~~~~~~~~~-l~~~~~~i~~~f~~~~~ve---~i~~~Le~~~  323 (405)
                      ..+|+.++....... +.. +..+...+..+|.+++..|   ++-+++++++
T Consensus       492 ~~~K~~l~~~~~~~~-~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~  542 (550)
T PRK08184        492 TGMEANLRFAGPETM-ETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTGQK  542 (550)
T ss_pred             HHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHhcCCcccccchHHHHhccCCC
Confidence            344555544322222 233 5556777899999998899   8999999998

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.8e-41  Score=319.48  Aligned_cols=205  Identities=22%  Similarity=0.213  Sum_probs=177.1

Q ss_pred             ccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCC
Q 015541           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (405)
Q Consensus        66 ~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (405)
                      +.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++  +++++|||+|.| ++||+|+|++++...      ..
T Consensus         3 ~~i~~~~-~~~v~~itln~~~-~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g-~~F~~G~Dl~~~~~~------~~   71 (229)
T PRK06213          3 ELVSYTL-EDGVATITLDDGK-VNALSPAMIDALNAALDQAE--DDRAVVVITGQP-GIFSGGFDLKVMTSG------AQ   71 (229)
T ss_pred             ceEEEEe-cCCEEEEEeCCCC-CCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCC-CceEcCcCHHHHhcc------hH
Confidence            3577776 6899999999995 69999999999999999988  457999999997 899999999987541      12


Q ss_pred             chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCC-eeeeCccccccccCCccHHHHHhcCCChH
Q 015541          146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~-a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                      ....++...++++..+.++|||+||+|||+|+|||++|+++||||||+++ ++|++||+++|++|+.|++.++++.+|..
T Consensus        72 ~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~  151 (229)
T PRK06213         72 AAIALLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPS  151 (229)
T ss_pred             hHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHH
Confidence            23445666678888999999999999999999999999999999999999 99999999999998888888999999986


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLA  283 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~  283 (405)
                       .+++|++||++++ |+||+++||||+++|++++.+.+.++++......|.  ..+|..++
T Consensus       152 -~a~~lll~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~  210 (229)
T PRK06213        152 -AFQRAVINAEMFD-PEEAVAAGFLDEVVPPEQLLARAQAAARELAGLNMGAHAATKLKVR  210 (229)
T ss_pred             -HHHHHHHcCcccC-HHHHHHCCCceeccChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence             8999999999999 999999999999999999999999998875443333  33444443

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=4.8e-41  Score=362.19  Aligned_cols=248  Identities=21%  Similarity=0.287  Sum_probs=203.2

Q ss_pred             EEEEEeeCcEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCc
Q 015541           68 VKGNVHPNGVAVITLDRP-KALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (405)
Q Consensus        68 i~~~~~~~~v~~ItLnrp-~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (405)
                      +.++..+++|++|||||| +++|+||.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++....    ....
T Consensus         7 ~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~----~~~~   82 (708)
T PRK11154          7 FTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACK----TAQE   82 (708)
T ss_pred             EEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccC----CHHH
Confidence            556665689999999999 68999999999999999999999999999999998768999999999875311    1111


Q ss_pred             hHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCC--eeeeCccccccccCCccHHHHHhcCCChH
Q 015541          147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK--TLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~--a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                      ...+......++..|.++||||||+|||+|+|||++|+++||||||+++  ++|++||+++|++|++|++++|+|++|..
T Consensus        83 ~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~  162 (708)
T PRK11154         83 AEALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVS  162 (708)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHH
Confidence            2334445566788999999999999999999999999999999999986  59999999999999999999999999997


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhh-------------cCCCc-----------------
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVT-------------FSEDP-----------------  274 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~-------------~~~~~-----------------  274 (405)
                       .+++|++||++++ |+||+++||||++||++++.+.+.+++...             .+..|                 
T Consensus       163 -~A~~llltG~~i~-a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  240 (708)
T PRK11154        163 -TALDMILTGKQLR-AKQALKLGLVDDVVPHSILLEVAVELAKKGKPARRPLPVRERLLEGNPLGRALLFKQARKKTLAK  240 (708)
T ss_pred             -HHHHHHHhCCcCC-HHHHHHCCCCcEecChHHHHHHHHHHHHhcCCccCcCCchhhhcccCchhHHHHHHHHHHHHHHh
Confidence             9999999999999 999999999999999999999999998772             12222                 


Q ss_pred             -------HHHHHHHHHHhcCCCCCcchhhhhHHHHHHHcCCcccHHHHHHHHHhc
Q 015541          275 -------HQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKH  322 (405)
Q Consensus       275 -------~~~i~~~l~~~~~~~~~~~~l~~~~~~i~~~f~~~~~ve~i~~~Le~~  322 (405)
                             ...++++++.... ......+..+.+.+..++.+++..+.+-+++.++
T Consensus       241 ~~g~~~A~~~~k~~i~~~~~-~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~~  294 (708)
T PRK11154        241 TQGNYPAPERILDVVRTGLE-KGMSSGYEAEARAFGELAMTPESAALRSIFFATT  294 (708)
T ss_pred             cccCChHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence                   1233444443211 1123445666777889999997888888877543

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=100.00  E-value=7.2e-41  Score=317.21  Aligned_cols=196  Identities=15%  Similarity=0.146  Sum_probs=163.6

Q ss_pred             EEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEeeCCCCCcccCCChhhHHHhhhhCCCCCc
Q 015541           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVK-CVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (405)
Q Consensus        68 i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~-~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (405)
                      ++++. +++|++|+||||++ |+||.+|+.+|.++++.++.|++++ +||++|.| ++||+|+|++++...   ......
T Consensus         2 ~~~~~-~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g-~~FsaG~Dl~~~~~~---~~~~~~   75 (239)
T PLN02267          2 CTLEK-RGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEG-KFFSNGFDLAWAQAA---GSAPSR   75 (239)
T ss_pred             ceeEe-cCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCC-CceeCCcCHHHHhcc---ccCHHH
Confidence            45665 68999999999986 9999999999999999999999875 77778876 899999999986421   111111


Q ss_pred             hHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEe-CCeeeeCccccccccCCccHHHHHhcCCChHH
Q 015541          147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT-EKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  225 (405)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riat-e~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~  225 (405)
                      ...+....++++..|.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|+.|+.+++++|++.+|.. 
T Consensus        76 ~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~-  154 (239)
T PLN02267         76 LHLMVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSP-  154 (239)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChH-
Confidence            22344455667888999999999999999999999999999999998 5789999999999973344578999999986 


Q ss_pred             HH-HHHHhcCCCCCcHHHHHHcCccceecCC-CChHHHHHHHHHhhcC
Q 015541          226 VG-AYLGMTGKRISTPSDALFAGLGTDYVPS-GNLGSLKEALLAVTFS  271 (405)
Q Consensus       226 ~a-~~l~ltG~~i~~a~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~  271 (405)
                      .+ ++|++||++++ |+||+++||||+++|+ +++.+.+.++++....
T Consensus       155 ~a~~~llltG~~~~-a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~  201 (239)
T PLN02267        155 AARRDVLLRAAKLT-AEEAVEMGIVDSAHDSAEETVEAAVRLGEELAA  201 (239)
T ss_pred             HHHHHHHHcCCcCC-HHHHHHCCCcceecCCHHHHHHHHHHHHHHHhh
Confidence            78 69999999999 9999999999999985 5788888888877433

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=100.00  E-value=3.1e-40  Score=355.39  Aligned_cols=197  Identities=20%  Similarity=0.296  Sum_probs=176.6

Q ss_pred             cEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCc
Q 015541           67 FVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (405)
Q Consensus        67 ~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (405)
                      .+.++..+++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++.....  .....
T Consensus         7 ~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~--~~~~~   83 (714)
T TIGR02437         7 TIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGK-DAFIVGADITEFLGLFA--LPDAE   83 (714)
T ss_pred             eEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CccccCcCHHHHhhccc--CCHHH
Confidence            4777755689999999999999999999999999999999999999999999997 79999999999864210  11112


Q ss_pred             hHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHH
Q 015541          147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV  226 (405)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~  226 (405)
                      ...++....+++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. .
T Consensus        84 ~~~~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~-~  162 (714)
T TIGR02437        84 LIQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGAD-N  162 (714)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHH-H
Confidence            234455566788899999999999999999999999999999999999999999999999999999999999999987 9


Q ss_pred             HHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHh
Q 015541          227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAV  268 (405)
Q Consensus       227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~  268 (405)
                      +++|++||++++ |++|+++||||+++|.+++.+.+.+++..
T Consensus       163 A~~llltG~~~~-A~eA~~~GLvd~vv~~~~l~~~a~~~a~~  203 (714)
T TIGR02437       163 ALEWIASGKENR-AEDALKVGAVDAVVTADKLGAAALQLLKD  203 (714)
T ss_pred             HHHHHHcCCcCC-HHHHHHCCCCcEeeChhHHHHHHHHHHHH
Confidence            999999999999 99999999999999999999888888855

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=100.00  E-value=1.2e-39  Score=350.78  Aligned_cols=243  Identities=19%  Similarity=0.272  Sum_probs=196.0

Q ss_pred             EEEeeCcEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEe-eCCCCCcccCCChhhHHHhhhhCCCCCch
Q 015541           70 GNVHPNGVAVITLDRP-KALNAMNLDMDIKYKSFLDEWESDPRVKCVLIE-GSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (405)
Q Consensus        70 ~~~~~~~v~~ItLnrp-~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~-g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (405)
                      ++..+++|++|||||| ++.|+||.+|+.+|.++++.++.|+++|+|||+ |.| ++||+|+|++++...    ......
T Consensus         4 ~~~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g-~~FcaG~Dl~~~~~~----~~~~~~   78 (699)
T TIGR02440         4 LTVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKP-DNFIAGADISMLAAC----QTAGEA   78 (699)
T ss_pred             EEEcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-CceeeccCchhhhcc----CChhHH
Confidence            3444689999999999 689999999999999999999999999999975 565 899999999987531    111223


Q ss_pred             HHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCC--eeeeCccccccccCCccHHHHHhcCCChHH
Q 015541          148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK--TLLAMPENGIGLFPDVGFSYIAAKGPGGGS  225 (405)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~--a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~  225 (405)
                      ..++.....++..|.++||||||+|||+|+|||++|+++||||||+++  ++|++||+++|++|++|++++|+|++|.. 
T Consensus        79 ~~~~~~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~-  157 (699)
T TIGR02440        79 KALAQQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVS-  157 (699)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHH-
Confidence            344555667888999999999999999999999999999999999986  79999999999999999999999999997 


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHh------------hcCCC-cHH----------------
Q 015541          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAV------------TFSED-PHQ----------------  276 (405)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~------------~~~~~-~~~----------------  276 (405)
                      .+++|++||+.++ |++|+++||||++||++++.+.+.+++.+            .+... |..                
T Consensus       158 ~A~~llltG~~~~-a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~k~~~~~~  236 (699)
T TIGR02440       158 TALDMILTGKQLR-AKQALKLGLVDDVVPQSILLDTAVEMALKGKPIRKPLSLQERLLEGTPLGRALLFDQAAKKTAKKT  236 (699)
T ss_pred             HHHHHHHcCCcCC-HHHHHhCCCCcEecChhHHHHHHHHHHHhCCCCCCCccchhhhcccCchhHHHHHHHHHHHHHHhc
Confidence            9999999999999 99999999999999999999999999862            12222 211                


Q ss_pred             --------HHHHHHHHhcCCCCCcchhhhhHHHHHHHcCCcccHHHHHHHHH
Q 015541          277 --------DIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELK  320 (405)
Q Consensus       277 --------~i~~~l~~~~~~~~~~~~l~~~~~~i~~~f~~~~~ve~i~~~Le  320 (405)
                              .+++.++.-. .......++.+...+.+++.+++..+.+-.++-
T Consensus       237 ~~~~~a~~~~~~~i~~~~-~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~  287 (699)
T TIGR02440       237 QGNYPAAERILDVVRQGL-AQGMQKGLDAEARAFGELVMTPESAALRSIFFA  287 (699)
T ss_pred             ccCChhHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence                    1111122211 111234566677788999999877777777664

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=100.00  E-value=1.3e-39  Score=298.50  Aligned_cols=193  Identities=31%  Similarity=0.419  Sum_probs=175.9

Q ss_pred             EEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchH
Q 015541           69 KGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVP  148 (405)
Q Consensus        69 ~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~  148 (405)
                      .++. +++|++|+||+|++.|++|.+|+++|.++++.++.|+++++|||||. ++.||+|+|++++....   .......
T Consensus         2 ~~~~-~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~-~~~Fs~G~dl~~~~~~~---~~~~~~~   76 (195)
T cd06558           2 LVER-DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGA-GKAFCAGADLKELAALS---DAGEEAR   76 (195)
T ss_pred             EEEE-ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCceEeCcCHHHHhccc---ccchhHH
Confidence            4555 57999999999999999999999999999999999999999999998 48999999999987622   1111256


Q ss_pred             HHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHH
Q 015541          149 KVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGA  228 (405)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~  228 (405)
                      .++...+.+...+..++||+||+|||+|+|||++++++||+||++++++|++||+++|++|+.|++++|++++|.. .+.
T Consensus        77 ~~~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~-~a~  155 (195)
T cd06558          77 AFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPA-RAR  155 (195)
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHH-HHH
Confidence            7888889999999999999999999999999999999999999999999999999999999999999999999986 999


Q ss_pred             HHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHh
Q 015541          229 YLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAV  268 (405)
Q Consensus       229 ~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~  268 (405)
                      +++++|+.++ |+||+++||++++++.+++.+.+.++++.
T Consensus       156 ~~~l~g~~~~-a~ea~~~Glv~~~~~~~~l~~~a~~~a~~  194 (195)
T cd06558         156 ELLLTGRRIS-AEEALELGLVDEVVPDEELLAAALELARR  194 (195)
T ss_pred             HHHHcCCccC-HHHHHHcCCCCeecChhHHHHHHHHHHhh
Confidence            9999999999 99999999999999998888888887653

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=100.00  E-value=2.8e-39  Score=348.82  Aligned_cols=191  Identities=27%  Similarity=0.400  Sum_probs=168.1

Q ss_pred             ccccccCCCccEEEEEeeCcEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEE-EEeeCCCCCcccCCChhhH
Q 015541           57 ATMAAAGAEEFVKGNVHPNGVAVITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCV-LIEGSGPRAFCAGMDIKGV  134 (405)
Q Consensus        57 ~~~~~~~~~~~i~~~~~~~~v~~ItLnrp~-~~Nal~~~m~~~L~~~l~~~~~d~~v~~v-vl~g~g~~~FcaG~Dl~~~  134 (405)
                      +++.+.+.++.+.++. +++|++||||||+ +.|+||.+|+.+|.++++.++.|++||+| |++|.| ++||+|+|++++
T Consensus         4 ~~~~~~~~~~~~~~~~-~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g-~~F~aG~Dl~~~   81 (737)
T TIGR02441         4 STSAALMARTHRHYEV-KGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKP-GSFVAGADIQMI   81 (737)
T ss_pred             CCCCCCCCCCeEEEEE-ECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCC-CcceeCcCHHHH
Confidence            3333445677788887 6999999999998 68999999999999999999999999975 568886 899999999998


Q ss_pred             HHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCC--eeeeCccccccccCCcc
Q 015541          135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK--TLLAMPENGIGLFPDVG  212 (405)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~--a~f~~PE~~iGl~P~~G  212 (405)
                      ...    ........++.....++..|.++||||||+|||+|+|||++|+++||||||+++  ++|++||+++|++|++|
T Consensus        82 ~~~----~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~G  157 (737)
T TIGR02441        82 AAC----KTAQEVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAG  157 (737)
T ss_pred             hcc----CChHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCcc
Confidence            631    111223445566677888999999999999999999999999999999999987  58999999999999999


Q ss_pred             HHHHHhcCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCC
Q 015541          213 FSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS  255 (405)
Q Consensus       213 ~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~  255 (405)
                      ++++|+|++|.. .+++|++||++++ |++|+++||||++||+
T Consensus       158 gt~rLprliG~~-~A~~l~ltG~~i~-a~eA~~~GLVd~vv~~  198 (737)
T TIGR02441       158 GTQRLPKLTGVP-AALDMMLTGKKIR-ADRAKKMGIVDQLVDP  198 (737)
T ss_pred             HhhhHHHhhCHH-HHHHHHHcCCcCC-HHHHHHCCCCeEecCC
Confidence            999999999987 9999999999999 9999999999999997

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=1.6e-39  Score=293.56  Aligned_cols=209  Identities=22%  Similarity=0.370  Sum_probs=179.3

Q ss_pred             CccEEEE--EeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhh-hC
Q 015541           65 EEFVKGN--VHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQ-KD  141 (405)
Q Consensus        65 ~~~i~~~--~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~-~~  141 (405)
                      +..+.+.  ..+..|..+.||||.|+||||..|..|+.++++.+..||++|+|||.|+| |.||+|+|+..+..... ..
T Consensus        18 ~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~G-KhFcaGIDl~~~~~~~~~~~   96 (292)
T KOG1681|consen   18 YKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAG-KHFCAGIDLNDMASDRILQP   96 (292)
T ss_pred             cceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCC-cceecccCcchhhhhhcccc
Confidence            4544444  34457999999999999999999999999999999999999999999997 99999999887654311 11


Q ss_pred             CC------CCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHH
Q 015541          142 RN------TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY  215 (405)
Q Consensus       142 ~~------~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~  215 (405)
                      ..      ....+++....++.+..|.+||||||++|+|+|+|||+-|..+||+|+|++++.|+.-|+.+|+..|+|.-.
T Consensus        97 ~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~  176 (292)
T KOG1681|consen   97 EGDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLN  176 (292)
T ss_pred             ccchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHh
Confidence            11      123455667777889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCC-CChHHHHHHHHHhhcCCCcH
Q 015541          216 IAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS-GNLGSLKEALLAVTFSEDPH  275 (405)
Q Consensus       216 ~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~~~~~  275 (405)
                      +||+.+|..+.++++.+|++.++ |.||+..|||++++|+ +++...+..++..+..+.|.
T Consensus       177 RlpkvVGn~s~~~elafTar~f~-a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KSpv  236 (292)
T KOG1681|consen  177 RLPKVVGNQSLARELAFTARKFS-ADEALDSGLVSRVFPDKEELLNGALPMAELIASKSPV  236 (292)
T ss_pred             hhhHHhcchHHHHHHHhhhhhcc-hhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCCce
Confidence            99999996679999999999999 9999999999999997 55666677777665555553

>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

Probab=100.00  E-value=4.6e-39  Score=288.50  Aligned_cols=254  Identities=21%  Similarity=0.236  Sum_probs=207.4

Q ss_pred             CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeC--CCCCcccCCChhhHHHhhhhC
Q 015541           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS--GPRAFCAGMDIKGVVAEIQKD  141 (405)
Q Consensus        64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~--g~~~FcaG~Dl~~~~~~~~~~  141 (405)
                      .++.|+|+...++|+.||+|||+++||+.+..+.||.++|..+..|++|.+|||||+  |+++||+|||-+-..... .-
T Consensus        16 ~y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~-gY   94 (282)
T COG0447          16 GYEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSG-GY   94 (282)
T ss_pred             CcceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCC-Cc
Confidence            478899998658999999999999999999999999999999999999999999975  889999999987543311 00


Q ss_pred             CCCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCC
Q 015541          142 RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGP  221 (405)
Q Consensus       142 ~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~  221 (405)
                      .+.+...  --...++-+.|+.+||||||.|+|+++|||-.|-+.||+-||+++++|++...++|-|-++-++-+|.|++
T Consensus        95 ~~d~~~~--rLnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~V  172 (282)
T COG0447          95 VDDDGIP--RLNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIV  172 (282)
T ss_pred             cCCccCc--ccchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHh
Confidence            0111111  11234566789999999999999999999999999999999999999999999999997777778899999


Q ss_pred             ChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHHhcCCCCCcchhhhhHHH
Q 015541          222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQ  301 (405)
Q Consensus       222 G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~  301 (405)
                      |.. .++++.+.++.++ |++|+++||||.|||.++|++...+++.+++.+.|. +++-++..|+........+.+....
T Consensus       173 GqK-kArEIwfLcR~Y~-A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kSP~-AlR~LK~Afnad~DGlaG~q~~ag~  249 (282)
T COG0447         173 GQK-KAREIWFLCRQYD-AEEALDMGLVNTVVPHADLEKETVQWAREMLAKSPT-ALRMLKAAFNADCDGLAGLQELAGN  249 (282)
T ss_pred             hhh-hhHHhhhhhhhcc-HHHHHhcCceeeeccHHHHHHHHHHHHHHHHhcChH-HHHHHHHHhcCCCchhhHHHHhccc
Confidence            986 9999999999999 999999999999999999999999999998888776 6777777776554322222221111


Q ss_pred             HHH-HcCCcccHHHHHHHHHhcc
Q 015541          302 ITS-CFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       302 i~~-~f~~~~~ve~i~~~Le~~~  323 (405)
                      -.. .+..++.+|+--+++|+|+
T Consensus       250 at~L~YmTdEa~EGr~AF~eKR~  272 (282)
T COG0447         250 ATLLYYMTDEAQEGRDAFLEKRK  272 (282)
T ss_pred             ceEEEEechhhhhhHHHHhhccC
Confidence            111 1334558999999999998

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=1.6e-38  Score=330.09  Aligned_cols=207  Identities=15%  Similarity=0.169  Sum_probs=173.6

Q ss_pred             CCCccEEEEEeeCcEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEeeCCCCCcccCCCh
Q 015541           63 GAEEFVKGNVHPNGVAVITLDRPK----------ALNAMNLDMDIKYKSFLDEWE-SDPRVKCVLIEGSGPRAFCAGMDI  131 (405)
Q Consensus        63 ~~~~~i~~~~~~~~v~~ItLnrp~----------~~Nal~~~m~~~L~~~l~~~~-~d~~v~~vvl~g~g~~~FcaG~Dl  131 (405)
                      +.++++.++. +++|++||||||+          ++|+||.+|+.+|.++++.++ .|+++|+|||||.|+++||+|+|+
T Consensus         8 ~~~~~v~~~~-~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL   86 (546)
T TIGR03222         8 SQYRHWKLTF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANI   86 (546)
T ss_pred             CCCceEEEEe-eCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCH
Confidence            3467788887 6899999999976          899999999999999999999 799999999999866899999999


Q ss_pred             hhHHHhhhhCCCCCchHHHHHH-HHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCC--eeeeCcccc-ccc
Q 015541          132 KGVVAEIQKDRNTPLVPKVFTA-EYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK--TLLAMPENG-IGL  207 (405)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~--a~f~~PE~~-iGl  207 (405)
                      +++....  .........+... ...+...+.++||||||+|||+|+|||++|+++||+|||+++  ++|++||++ +|+
T Consensus        87 ~~~~~~~--~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl  164 (546)
T TIGR03222        87 FMLGLST--HAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGV  164 (546)
T ss_pred             HHHhccc--cchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCc
Confidence            9874311  0000011111111 123445678999999999999999999999999999999986  799999997 999


Q ss_pred             cCCccHHHHHh--cCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCc
Q 015541          208 FPDVGFSYIAA--KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDP  274 (405)
Q Consensus       208 ~P~~G~~~~L~--r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~  274 (405)
                      +|++|++++++  +.+|.. ++++|+|||++++ |+||+++||||++||++++.+.+.+++.+.....|
T Consensus       165 ~P~~gg~~~l~~~~~vg~~-~A~~llltG~~i~-A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p  231 (546)
T TIGR03222       165 LPGTGGLTRVTDKRRVRRD-HADIFCTIEEGVR-GKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQSD  231 (546)
T ss_pred             CCccchhhhccccchhCHH-HHHHHHHcCCCcc-HHHHHHcCCceEEeChHHHHHHHHHHHHHHHhCCC
Confidence            99999999997  688986 9999999999999 99999999999999999999999999887544433

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=1.1e-37  Score=324.87  Aligned_cols=205  Identities=16%  Similarity=0.185  Sum_probs=171.9

Q ss_pred             CCCccEEEEEeeCcEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEeeCCCCCcccCCCh
Q 015541           63 GAEEFVKGNVHPNGVAVITLDRP-------K---ALNAMNLDMDIKYKSFLDEWE-SDPRVKCVLIEGSGPRAFCAGMDI  131 (405)
Q Consensus        63 ~~~~~i~~~~~~~~v~~ItLnrp-------~---~~Nal~~~m~~~L~~~l~~~~-~d~~v~~vvl~g~g~~~FcaG~Dl  131 (405)
                      +.++.+.++. +++|++||||||       +   ++|+||.+|+.+|.++++.++ .|++||+|||||.|+++||+|+|+
T Consensus        12 ~~~~~~~~e~-~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL   90 (550)
T PRK08184         12 SQYRHWKLSF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANI   90 (550)
T ss_pred             CCCceEEEEe-eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCH
Confidence            4577899987 689999999965       4   899999999999999999999 789999999999877899999999


Q ss_pred             hhHHHhhhhCCCCCchHHHHHHHH-HHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCC--eeeeCcccc-ccc
Q 015541          132 KGVVAEIQKDRNTPLVPKVFTAEY-SLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK--TLLAMPENG-IGL  207 (405)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~--a~f~~PE~~-iGl  207 (405)
                      +++....  .........+....+ .+...+..+||||||+|||+|+|||++|+++|||||++++  ++|++||++ +|+
T Consensus        91 ~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl  168 (550)
T PRK08184         91 FMLGGSS--HAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGV  168 (550)
T ss_pred             HhHhccc--cchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhcccc
Confidence            9874311  000000111111111 2345678999999999999999999999999999999987  899999997 999


Q ss_pred             cCCccHHHHHh--cCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCC
Q 015541          208 FPDVGFSYIAA--KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSE  272 (405)
Q Consensus       208 ~P~~G~~~~L~--r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~  272 (405)
                      +|++|++++|+  +.+|.. ++++|++||++++ |+||+++||||++||++++.+.+.+++.+....
T Consensus       169 ~P~~gg~~rl~~~~~vg~~-~A~~llltG~~i~-AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~  233 (550)
T PRK08184        169 LPGTGGLTRVTDKRKVRRD-LADIFCTIEEGVR-GKRAVDWRLVDEVVKPSKFDAKVAERAAELAAA  233 (550)
T ss_pred             CCCcchHHHhhhhhhcCHH-HHHHHHHhCCccc-HHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhC
Confidence            99999999998  779986 9999999999999 999999999999999999999998888775433

>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=9.7e-36  Score=274.89  Aligned_cols=251  Identities=19%  Similarity=0.249  Sum_probs=204.7

Q ss_pred             CccEEEEEeeCcEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCC
Q 015541           65 EEFVKGNVHPNGVAVITLD-RPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLn-rp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (405)
                      +..+.++. +|++.+|.+| ||++.|+|+.+|+.++.++|.....|+++..++++|.| ++||+|.|++.+......+. 
T Consensus         6 ~~~~vv~~-~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G-~~f~sG~Df~~~~~~~~~d~-   82 (266)
T KOG0016|consen    6 YREIVVTR-ENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNG-SYFCSGLDFSPFAKALDDDA-   82 (266)
T ss_pred             ccceEEEe-cCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCc-cEEeeccccchhhhcCCCcc-
Confidence            44566766 6999999999 99999999999999999999999999999999999997 89999999998876432221 


Q ss_pred             CCchHH---HHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcC
Q 015541          144 TPLVPK---VFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG  220 (405)
Q Consensus       144 ~~~~~~---~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~  220 (405)
                      ......   +.....-....+.++|||+||.|||+|+|-|+.+.-.||+++|+|+++|..|.+++|..|++|++|.||++
T Consensus        83 ~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~i  162 (266)
T KOG0016|consen   83 NEESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKI  162 (266)
T ss_pred             cccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHh
Confidence            111221   22223346778899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhh
Q 015541          221 PGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLL  298 (405)
Q Consensus       221 ~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~  298 (405)
                      +|.. .+.+|+|.|++++ |+||...|||++++|.+++.+.+..-+++...-.|.  +..|++++.-.. .......+.+
T Consensus       163 mG~~-~A~E~ll~~~klt-A~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l~p~sl~~~K~L~rs~~k-~~l~~an~~E  239 (266)
T KOG0016|consen  163 MGSA-SANEMLLFGEKLT-AQEACEKGLVSKIFPAETFNEEVLKKIKQYSKLSPESLLGMKKLLRSNIK-EELIKANEEE  239 (266)
T ss_pred             hchh-hHHHHHHhCCccc-HHHHHhcCchhhhcChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HHHHHhhHHH
Confidence            9986 9999999999999 999999999999999999998888887774443333  445666654211 1112345567


Q ss_pred             HHHHHHHcCCcccHHHHHHHHHh
Q 015541          299 LPQITSCFSSEKSVRQIIEELKK  321 (405)
Q Consensus       299 ~~~i~~~f~~~~~ve~i~~~Le~  321 (405)
                      ...+.+.|.+++..+.+.+++.+
T Consensus       240 ~~~l~~~W~s~e~~~~~~~~~~~  262 (266)
T KOG0016|consen  240 CNVLLKQWVSAECLARFKQYLSK  262 (266)
T ss_pred             HHHHHhhccChHHHHHHHHHhcc
Confidence            77888999888677777766654

>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=3.9e-35  Score=260.95  Aligned_cols=240  Identities=23%  Similarity=0.355  Sum_probs=199.1

Q ss_pred             eCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHH
Q 015541           74 PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTA  153 (405)
Q Consensus        74 ~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~  153 (405)
                      .++|..|+||+|+++|.|+..|+.+|.+.|.....+.++|+|||+..| +.||+|.||+++..    +...+.-...|..
T Consensus        39 ~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~G-kifSaGH~LKELt~----e~g~d~haevFqt  113 (287)
T KOG1682|consen   39 HNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQG-KIFSAGHNLKELTN----EPGSDIHAEVFQT  113 (287)
T ss_pred             ccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCC-ccccccccHHHhhc----CccchHHHHHHHH
Confidence            489999999999999999999999999999999999999999999997 89999999999986    2233445668888


Q ss_pred             HHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhc
Q 015541          154 EYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMT  233 (405)
Q Consensus       154 ~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~lt  233 (405)
                      .-+++..|.++|+|||+-|||++..+||.|...||++||+++++|..|-..+|+|...-|. -|.|.+.+. .+.||++|
T Consensus       114 c~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGv-AlaRavpRk-va~~ML~T  191 (287)
T KOG1682|consen  114 CTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGV-ALARAVPRK-VAAYMLMT  191 (287)
T ss_pred             HHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcch-hHhhhcchh-HHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999998554443 467888875 99999999


Q ss_pred             CCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHHhc-CCC--CCcchhhhhHHHHHHHcCCcc
Q 015541          234 GKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYS-SDP--EGEAPLKLLLPQITSCFSSEK  310 (405)
Q Consensus       234 G~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~-~~~--~~~~~l~~~~~~i~~~f~~~~  310 (405)
                      |.+|+ +++|+..||++++||.++++...++++..+-+. + +++-.+=.+|. .+.  .....+....+.+-+.|.-.|
T Consensus       192 g~Pi~-~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~-s-rav~slgk~f~y~q~~ms~~ea~~~~~~~m~~n~ql~d  268 (287)
T KOG1682|consen  192 GLPIT-GEEALISGLVSKVVPAEELDKEIEEITNAIKAK-S-RAVISLGKEFYYKQLAMSQAEAFSAAQEKMCENFQLGD  268 (287)
T ss_pred             CCCCc-hHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhh-H-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccc
Confidence            99999 899999999999999999999999988763221 1 23333323322 111  111223334455677787778


Q ss_pred             cHHHHHHHHHhcc
Q 015541          311 SVRQIIEELKKHQ  323 (405)
Q Consensus       311 ~ve~i~~~Le~~~  323 (405)
                      +.|+|.+++++++
T Consensus       269 ~kegiasf~~krp  281 (287)
T KOG1682|consen  269 TKEGIASFFEKRP  281 (287)
T ss_pred             hHHHHHHHhccCC
Confidence            9999999999998

>cd07014 S49_SppA Signal peptide peptidase A

Probab=99.78  E-value=6.4e-19  Score=159.67  Aligned_cols=140  Identities=15%  Similarity=0.030  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEECC
Q 015541           95 MDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDG  174 (405)
Q Consensus        95 m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G  174 (405)
                      .+.+|.++++.+++|++|++|||++     ||.|+|+....                 ..++++..+.+++|||||++||
T Consensus        23 ~~~~l~~~l~~a~~d~~v~~vvl~~-----~~~gg~~~~~~-----------------~~~~~i~~~~~~~kpVia~v~G   80 (177)
T cd07014          23 SGDTTAAQIRDARLDPKVKAIVLRV-----NSPGGSVTASE-----------------VIRAELAAARAAGKPVVASGGG   80 (177)
T ss_pred             CHHHHHHHHHHHhcCCCceEEEEEe-----eCCCcCHHHHH-----------------HHHHHHHHHHhCCCCEEEEECC
Confidence            5678999999999999999999986     68899876421                 1234566788899999999999


Q ss_pred             ccccccceecccccEEEEeCCeeeeCccccccccCCccHHH--------HHhcCCC--hHHHHHHHHhcCCCCCcHHHHH
Q 015541          175 VTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY--------IAAKGPG--GGSVGAYLGMTGKRISTPSDAL  244 (405)
Q Consensus       175 ~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~--------~L~r~~G--~~~~a~~l~ltG~~i~~a~eA~  244 (405)
                      .|.|||+.|+++||++++++++.|+.+.+..+..+......        .+++..|  .. ...+++..|..++ |++|+
T Consensus        81 ~a~g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~-~~~~~l~~g~~~~-a~~A~  158 (177)
T cd07014          81 NAASGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPE-QQIDKIAQGGVWT-GQDAK  158 (177)
T ss_pred             chhHHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHH-HhHHHhcCcCeEe-HHHHH
Confidence            99999999999999999999999999987766433322222        3444445  43 6788889999999 99999


Q ss_pred             HcCccceecCCCCh
Q 015541          245 FAGLGTDYVPSGNL  258 (405)
Q Consensus       245 ~~GLv~~vv~~~~l  258 (405)
                      +.||||++.+.+++
T Consensus       159 ~~GLVD~v~~~~e~  172 (177)
T cd07014         159 ANGLVDSLGSFDDA  172 (177)
T ss_pred             HcCCcccCCCHHHH
Confidence            99999999986554

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.75  E-value=6.4e-18  Score=154.49  Aligned_cols=146  Identities=12%  Similarity=0.017  Sum_probs=114.5

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEe-eCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541           78 AVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIE-GSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (405)
Q Consensus        78 ~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~-g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (405)
                      .+|.|+     ..++..+...+.+.|+.++.|+ ++.|+|. .+      -||++..-.                    .
T Consensus         2 ~vv~i~-----g~I~~~~~~~l~~~l~~a~~~~-~~~vvl~InS------pGG~v~~~~--------------------~   49 (187)
T cd07020           2 YVLEIN-----GAITPATADYLERAIDQAEEGG-ADALIIELDT------PGGLLDSTR--------------------E   49 (187)
T ss_pred             EEEEEe-----eEEChHHHHHHHHHHHHHHhCC-CCEEEEEEEC------CCCCHHHHH--------------------H
Confidence            455665     3456677888999999998765 7888886 32      234543211                    3


Q ss_pred             HHHHHHhCCCcEEEEEC---CccccccceecccccEEEEeCCeeeeCccccccccCCc--------------cHHHHHhc
Q 015541          157 LICKISEYKKPYISLMD---GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDV--------------GFSYIAAK  219 (405)
Q Consensus       157 l~~~i~~~~kPvIa~v~---G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~--------------G~~~~L~r  219 (405)
                      +...|..+||||||+|+   |+|+|||+.|+++||+|+++++++|++++...|..+..              +....+++
T Consensus        50 i~~~l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (187)
T cd07020          50 IVQAILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAE  129 (187)
T ss_pred             HHHHHHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            34456789999999999   99999999999999999999999999999985554432              24557888


Q ss_pred             CCChH-HHHHHHHhcCCCCCcHHHHHHcCccceecCCC
Q 015541          220 GPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPSG  256 (405)
Q Consensus       220 ~~G~~-~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~  256 (405)
                      ..|.. ..+.+++++|+.++ |+||+++||||++++++
T Consensus       130 ~~G~~~~~a~~~l~~g~~~~-a~eA~~~Glvd~v~~~~  166 (187)
T cd07020         130 LRGRNAEWAEKAVRESLSLT-AEEALKLGVIDLIAADL  166 (187)
T ss_pred             HcCCCHHHHHHHHHcCCeec-HHHHHHcCCcccccCCH
Confidence            88862 27899999999999 99999999999999874

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A

Probab=99.73  E-value=1.6e-18  Score=146.61  Aligned_cols=92  Identities=36%  Similarity=0.686  Sum_probs=72.1

Q ss_pred             hhhhHHHHHHHcCCcccHHHHHHHHHhccCCccchhhHHHHHHHHHHhccCCchHHHHHHHHHHHhhhh----cCCcc--
Q 015541          295 LKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH----GKTDN--  368 (405)
Q Consensus       295 l~~~~~~i~~~f~~~~~ve~i~~~Le~~~~~~~~~~~~wa~~~l~~l~~~SP~sl~vt~~~~~~~~~~~----~~~e~--  368 (405)
                      |...+..|++||+.+ ++++|++.|+...       .+|++++++.|+++||+||+|||+++++++...    ..+|+  
T Consensus         2 L~~~~~~I~~~F~~~-s~~eI~~~L~~~~-------~~~a~~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~   73 (118)
T PF13766_consen    2 LAEHLEAIDRCFSAD-SVEEIIEALEADG-------DEWAQKTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRL   73 (118)
T ss_dssp             CHHCHHHHHHHTTSS-SHHHHHHHHHHHS--------HHHHHHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhCCC-CHHHHHHHHHccC-------cHHHHHHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHH
Confidence            456778899999988 9999999999966       799999999999999999999999999987631    12333  


Q ss_pred             --------CCcc-----------CCCCCCCCcCCCCHHHHHhhcc
Q 015541          369 --------ELSK-----------NPKWNPASLEEVNQSEVEALFE  394 (405)
Q Consensus       369 --------~~~~-----------~P~W~~~sl~~V~~~~v~~~f~  394 (405)
                              ||.+           +|+|+|++++||++++|++||+
T Consensus        74 a~~~~~~~DF~EGVRA~LIDKd~~P~W~p~~l~~V~~~~V~~~f~  118 (118)
T PF13766_consen   74 ASRCMRHPDFAEGVRALLIDKDKNPKWSPASLEDVSDEDVDSFFE  118 (118)
T ss_dssp             HHHHHCCSCHHHHHHHHTTS-------SSSSCCCS-HHHHHHHCS
T ss_pred             HHHHhccchHHHHHHHHHhcCCCCCCCCCCChHHCCHHHHHHHhC
Confidence                    3332           8999999999999999999995

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.62  E-value=1e-15  Score=142.52  Aligned_cols=101  Identities=15%  Similarity=0.157  Sum_probs=81.1

Q ss_pred             EEEEEEcCC--CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHH
Q 015541           77 VAVITLDRP--KALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAE  154 (405)
Q Consensus        77 v~~ItLnrp--~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~  154 (405)
                      |++|.++-|  +..+.-+..++.+|.++|+.+..||+|++|||+     .||+|+|+..+..                 .
T Consensus         2 i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~-----~~s~Gg~~~~~~~-----------------~   59 (211)
T cd07019           2 IGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR-----VNSPGGSVTASEV-----------------I   59 (211)
T ss_pred             EEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE-----EcCCCcCHHHHHH-----------------H
Confidence            455555433  122333455689999999999999999999996     7999999976532                 1


Q ss_pred             HHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeee
Q 015541          155 YSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLA  199 (405)
Q Consensus       155 ~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~  199 (405)
                      ++.+..+..++|||||+++|.|.|+|+.|+++||++++++.+.|+
T Consensus        60 ~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~g  104 (211)
T cd07019          60 RAELAAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTG  104 (211)
T ss_pred             HHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEE
Confidence            234557788999999999999999999999999999999999886

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=99.48  E-value=9.6e-14  Score=147.09  Aligned_cols=154  Identities=19%  Similarity=0.206  Sum_probs=118.0

Q ss_pred             eCcEEEEEEcCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCC--CCcccCCChhhHHHhhhhCCCCCchHH
Q 015541           74 PNGVAVITLDRPKA--LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGP--RAFCAGMDIKGVVAEIQKDRNTPLVPK  149 (405)
Q Consensus        74 ~~~v~~ItLnrp~~--~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~--~~FcaG~Dl~~~~~~~~~~~~~~~~~~  149 (405)
                      +++|++|+++.+=.  .|..+....+.+.+.|+.+..|++|++|||+-.+|  .+||+                      
T Consensus       307 ~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as----------------------  364 (584)
T TIGR00705       307 QDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS----------------------  364 (584)
T ss_pred             CCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH----------------------
Confidence            57899999997632  34444445677889999999999999999996432  23332                      


Q ss_pred             HHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeee------eCcc------ccccccCCccHHHHH
Q 015541          150 VFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL------AMPE------NGIGLFPDVGFSYIA  217 (405)
Q Consensus       150 ~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f------~~PE------~~iGl~P~~G~~~~L  217 (405)
                        ...++.+..+...+|||||.++|.|.+||..++++||.++|++.+.+      +++.      .++|+.|+.+.+..+
T Consensus       365 --e~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~  442 (584)
T TIGR00705       365 --EIIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHEL  442 (584)
T ss_pred             --HHHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCc
Confidence              11123344566778999999999999999999999999999999877      6663      589999988777655


Q ss_pred             hc----------------------------CCChHHH-----HHHHHhcCCCCCcHHHHHHcCccceec
Q 015541          218 AK----------------------------GPGGGSV-----GAYLGMTGKRISTPSDALFAGLGTDYV  253 (405)
Q Consensus       218 ~r----------------------------~~G~~~~-----a~~l~ltG~~i~~a~eA~~~GLv~~vv  253 (405)
                      .+                            .++.+ +     ..+.+++|+.++ |++|+++||||++.
T Consensus       443 ~~~s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~-R~l~~e~v~~ia~Grv~t-g~eA~~~GLVD~ig  509 (584)
T TIGR00705       443 ANVSLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAG-RNLTPTQVDKVAQGRVWT-GEDAVSNGLVDALG  509 (584)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCHHHHHHHHhCCCcC-HHHHHHcCCcccCC
Confidence            43                            33322 3     677889999999 99999999999994

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.47  E-value=4.4e-13  Score=125.13  Aligned_cols=96  Identities=18%  Similarity=0.192  Sum_probs=75.5

Q ss_pred             cCCCCCCCC-CHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHH
Q 015541           83 DRPKALNAM-NLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKI  161 (405)
Q Consensus        83 nrp~~~Nal-~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i  161 (405)
                      ++|...|++ +..|+.+|.++|+.++.|++|++|||+.     +|.|+++....                 ..++.+..+
T Consensus        13 ~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~-----~s~gg~~~~~~-----------------~l~~~l~~~   70 (214)
T cd07022          13 PRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI-----DSPGGEVAGVF-----------------ELADAIRAA   70 (214)
T ss_pred             CCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE-----eCCCCcHHHHH-----------------HHHHHHHHH
Confidence            566666764 5789999999999999999999999975     45677754321                 122333334


Q ss_pred             HhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCc
Q 015541          162 SEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP  201 (405)
Q Consensus       162 ~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~P  201 (405)
                      .. +|||||+++|.|.|||+.|+++||+++|++.+.|+..
T Consensus        71 ~~-~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~i  109 (214)
T cd07022          71 RA-GKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSI  109 (214)
T ss_pred             hc-CCCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEee
Confidence            44 6999999999999999999999999999999987643

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.45  E-value=4.6e-13  Score=119.21  Aligned_cols=135  Identities=16%  Similarity=0.076  Sum_probs=102.6

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEEE
Q 015541           91 MNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYIS  170 (405)
Q Consensus        91 l~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa  170 (405)
                      ++..|..+|.+.|+.++.|+.+++|+|+.     .|.|+|+....                    .+...|..++||||+
T Consensus         8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~-----~s~Gg~~~~~~--------------------~i~~~l~~~~kpvva   62 (161)
T cd00394           8 IEDVSADQLAAQIRFAEADNSVKAIVLEV-----NTPGGRVDAGM--------------------NIVDALQASRKPVIA   62 (161)
T ss_pred             EccchHHHHHHHHHHHHhCCCCceEEEEE-----ECCCcCHHHHH--------------------HHHHHHHHhCCCEEE
Confidence            34578899999999999999999999975     46677764322                    234467778899999


Q ss_pred             EECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHH------HH----h---------cCCChHHHHHHHH
Q 015541          171 LMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY------IA----A---------KGPGGGSVGAYLG  231 (405)
Q Consensus       171 ~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~------~L----~---------r~~G~~~~a~~l~  231 (405)
                      .++|.|.|+|+.|+++||.|++.+++.|++.....+.....+-..      .+    .         |-.... ....++
T Consensus        63 ~~~g~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~-~~~~~~  141 (161)
T cd00394          63 YVGGQAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTE-KLEEDI  141 (161)
T ss_pred             EECChhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHh
Confidence            999999999999999999999999999999888765543220000      11    1         112221 346677


Q ss_pred             hcCCCCCcHHHHHHcCcccee
Q 015541          232 MTGKRISTPSDALFAGLGTDY  252 (405)
Q Consensus       232 ltG~~i~~a~eA~~~GLv~~v  252 (405)
                      .+|..++ |+||+++||||++
T Consensus       142 ~~~~~~~-a~eA~~~GLvD~i  161 (161)
T cd00394         142 EKDLVLT-AQEALEYGLVDAL  161 (161)
T ss_pred             cCCcEEc-HHHHHHcCCcCcC
Confidence            7889999 9999999999975

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.39  E-value=1.1e-12  Score=116.83  Aligned_cols=130  Identities=15%  Similarity=0.151  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEEC
Q 015541           94 DMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMD  173 (405)
Q Consensus        94 ~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~  173 (405)
                      .+...+.+.|+.+..++.+ .+.|.+.|+       ++..                    ...+...|..++||||+.++
T Consensus        15 ~~~~~~~~~l~~~~~~~~i-~l~inspGG-------~~~~--------------------~~~i~~~i~~~~~pvi~~v~   66 (160)
T cd07016          15 VTAKEFKDALDALGDDSDI-TVRINSPGG-------DVFA--------------------GLAIYNALKRHKGKVTVKID   66 (160)
T ss_pred             cCHHHHHHHHHhccCCCCE-EEEEECCCC-------CHHH--------------------HHHHHHHHHhcCCCEEEEEc
Confidence            4567788888888887444 455566653       2211                    12455568889999999999


Q ss_pred             CccccccceecccccEEEEeCCeeeeCccccccccCCccH---------------HHHHhcCCChH-HHHHHHHhcCCCC
Q 015541          174 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGF---------------SYIAAKGPGGG-SVGAYLGMTGKRI  237 (405)
Q Consensus       174 G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~---------------~~~L~r~~G~~-~~a~~l~ltG~~i  237 (405)
                      |.|.|+|+.|+++||+|+++++++|.++....|..+....               ...+.+..|.. .....++.++..+
T Consensus        67 g~a~s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l  146 (160)
T cd07016          67 GLAASAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWL  146 (160)
T ss_pred             chHHhHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeEC
Confidence            9999999999999999999999999998777665444321               22366667732 2666777777789


Q ss_pred             CcHHHHHHcCcccee
Q 015541          238 STPSDALFAGLGTDY  252 (405)
Q Consensus       238 ~~a~eA~~~GLv~~v  252 (405)
                      + |+||+++||||++
T Consensus       147 ~-a~eA~~~GliD~v  160 (160)
T cd07016         147 T-AQEAVELGFADEI  160 (160)
T ss_pred             c-HHHHHHcCCCCcC
Confidence            9 9999999999975

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.37  E-value=3.6e-12  Score=118.44  Aligned_cols=87  Identities=18%  Similarity=0.124  Sum_probs=74.4

Q ss_pred             CHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEEEE
Q 015541           92 NLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISL  171 (405)
Q Consensus        92 ~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~  171 (405)
                      ...|+.+|.++|+.+++|+++++|+|++     +|.|+|+....                 ..++.+..+..++|||||+
T Consensus        15 ~~~~~~~l~~~l~~a~~d~~i~~ivl~~-----~s~Gg~~~~~~-----------------~i~~~i~~~~~~~kpvia~   72 (208)
T cd07023          15 GGIGADSLIEQLRKAREDDSVKAVVLRI-----NSPGGSVVASE-----------------EIYREIRRLRKAKKPVVAS   72 (208)
T ss_pred             CCCCHHHHHHHHHHHHhCCCCcEEEEEE-----ECCCCCHHHHH-----------------HHHHHHHHHHhcCCcEEEE
Confidence            3678999999999999999999999987     47799986421                 1234556778889999999


Q ss_pred             ECCccccccceecccccEEEEeCCeeeeC
Q 015541          172 MDGVTMGFGIGISGHGRYRIVTEKTLLAM  200 (405)
Q Consensus       172 v~G~a~GgG~~lal~~D~riate~a~f~~  200 (405)
                      ++|.|.|+|+.|+++||++++++.+.|+.
T Consensus        73 v~g~~~s~g~~lA~aaD~i~a~~~s~~g~  101 (208)
T cd07023          73 MGDVAASGGYYIAAAADKIVANPTTITGS  101 (208)
T ss_pred             ECCcchhHHHHHHhhCCEEEECCCCeEEe
Confidence            99999999999999999999999998863

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=99.32  E-value=1.6e-11  Score=114.00  Aligned_cols=136  Identities=15%  Similarity=0.138  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCC--CcEEEEEC
Q 015541           96 DIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYK--KPYISLMD  173 (405)
Q Consensus        96 ~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--kPvIa~v~  173 (405)
                      ..+|.++|+.+.+|+++++|||++.     |.|+|+....                    .+...|..++  |||||+++
T Consensus        15 ~~~l~~~l~~a~~d~~i~~vvl~~~-----s~Gg~~~~~~--------------------~l~~~i~~~~~~kpvia~v~   69 (207)
T TIGR00706        15 PEDFDKKIKRIKDDKSIKALLLRIN-----SPGGTVVASE--------------------EIYEKLKKLKAKKPVVASMG   69 (207)
T ss_pred             HHHHHHHHHHHhhCCCccEEEEEec-----CCCCCHHHHH--------------------HHHHHHHHhcCCCCEEEEEC
Confidence            5788999999999999999999874     6778775332                    2333556666  99999999


Q ss_pred             CccccccceecccccEEEEeCCeeeeCccc------------cccccCC---------ccHH------------------
Q 015541          174 GVTMGFGIGISGHGRYRIVTEKTLLAMPEN------------GIGLFPD---------VGFS------------------  214 (405)
Q Consensus       174 G~a~GgG~~lal~~D~riate~a~f~~PE~------------~iGl~P~---------~G~~------------------  214 (405)
                      |.|.|||+.|+++||.+++++++.++.--+            ++|+-+.         .+..                  
T Consensus        70 g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~  149 (207)
T TIGR00706        70 GVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNLVNE  149 (207)
T ss_pred             CccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999988665322            2333110         0000                  


Q ss_pred             ---HHH---h--cCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChH
Q 015541          215 ---YIA---A--KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLG  259 (405)
Q Consensus       215 ---~~L---~--r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~  259 (405)
                         .|+   .  |-+...  ...=++.|+.++ +++|++.||||.+...+++.
T Consensus       150 ~~~~f~~~va~~R~~~~~--~~~~~~~~~~~~-~~~A~~~gLvD~i~~~~~~~  199 (207)
T TIGR00706       150 SYEQFVQVVAKGRNLPVE--DVKKFADGRVFT-GRQALKLRLVDKLGTEDDAL  199 (207)
T ss_pred             HHHHHHHHHHhcCCCCHH--HHHHHhcCCccc-HHHHHHcCCCcccCCHHHHH
Confidence               011   1  222211  122346789999 99999999999997655443

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.14  E-value=2e-10  Score=107.80  Aligned_cols=90  Identities=11%  Similarity=0.054  Sum_probs=74.4

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEE
Q 015541           90 AMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYI  169 (405)
Q Consensus        90 al~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvI  169 (405)
                      .-+..++.+|.+.|+++..|++|++|||+..+ ..| ++.++.++..                    .+..+...+||||
T Consensus        25 ~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s-~gg-~~~~~~el~~--------------------~i~~~~~~~kpVi   82 (222)
T cd07018          25 ESSELSLRDLLEALEKAAEDDRIKGIVLDLDG-LSG-GLAKLEELRQ--------------------ALERFRASGKPVI   82 (222)
T ss_pred             CcCCccHHHHHHHHHHHhcCCCeEEEEEECCC-CCC-CHHHHHHHHH--------------------HHHHHHHhCCeEE
Confidence            34567789999999999999999999999987 455 6666665533                    3334566799999


Q ss_pred             EEECCccccccceecccccEEEEeCCeeeeCcc
Q 015541          170 SLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPE  202 (405)
Q Consensus       170 a~v~G~a~GgG~~lal~~D~riate~a~f~~PE  202 (405)
                      |.++| |.+||+.|+++||.++|.+.+.|+..-
T Consensus        83 a~~~~-~~sggy~lasaad~I~a~p~~~vg~iG  114 (222)
T cd07018          83 AYADG-YSQGQYYLASAADEIYLNPSGSVELTG  114 (222)
T ss_pred             EEeCC-CCchhhhhhhhCCEEEECCCceEEeec
Confidence            99998 889999999999999999999998843

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.10  E-value=9.6e-10  Score=99.68  Aligned_cols=135  Identities=16%  Similarity=0.166  Sum_probs=95.6

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEE
Q 015541           90 AMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYI  169 (405)
Q Consensus        90 al~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvI  169 (405)
                      .++..+...+.+.|+.+++++ ++.|+|.=..     -||++..                    ...+...|..+++|+|
T Consensus         9 ~I~~~~~~~l~~~l~~a~~~~-~~~ivl~ins-----pGG~v~~--------------------~~~I~~~l~~~~~pvv   62 (178)
T cd07021           9 EIDPGLAAFVERALKEAKEEG-ADAVVLDIDT-----PGGRVDS--------------------ALEIVDLILNSPIPTI   62 (178)
T ss_pred             EECHHHHHHHHHHHHHHHhCC-CCeEEEEEEC-----cCCCHHH--------------------HHHHHHHHHhCCCCEE
Confidence            456677888999999999886 6777775332     2344332                    2244557889999999


Q ss_pred             EEECCccccccceecccccEEEEeCCeeeeCccccccccCCccH--------HHH------HhcCCChH-HHHHHHHhcC
Q 015541          170 SLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGF--------SYI------AAKGPGGG-SVGAYLGMTG  234 (405)
Q Consensus       170 a~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~--------~~~------L~r~~G~~-~~a~~l~ltG  234 (405)
                      ++|+|.|.|+|+.|+++||++++++++.|+.++.-    +..|+        +..      +.+.-|+. ..+..|+--.
T Consensus        63 a~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v----~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~a~~mv~~~  138 (178)
T cd07021          63 AYVNDRAASAGALIALAADEIYMAPGATIGAAEPI----PGDGNGAADEKVQSYWRAKMRAAAEKKGRDPDIAEAMVDKD  138 (178)
T ss_pred             EEECCchHHHHHHHHHhCCeEEECCCCeEecCeeE----cCCCccchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhh
Confidence            99999999999999999999999999999988543    33333        111      22223432 1344444333


Q ss_pred             -------------CCCCcHHHHHHcCccceecCC
Q 015541          235 -------------KRISTPSDALFAGLGTDYVPS  255 (405)
Q Consensus       235 -------------~~i~~a~eA~~~GLv~~vv~~  255 (405)
                                   -.++ ++||++.|++|.++++
T Consensus       139 ~~v~~~~~~~~~~l~lt-a~eA~~~g~~d~ia~~  171 (178)
T cd07021         139 IEVPGVGIKGGELLTLT-ADEALKVGYAEGIAGS  171 (178)
T ss_pred             cccccccccccceeeeC-HHHHHHhCCeEEEECC
Confidence                         2699 9999999999999864

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=98.64  E-value=7.4e-08  Score=94.54  Aligned_cols=171  Identities=15%  Similarity=0.130  Sum_probs=138.8

Q ss_pred             CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHH
Q 015541           75 NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAE  154 (405)
Q Consensus        75 ~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~  154 (405)
                      .++..++++ |++ |..|.++..+|..-++.+..+..+++.++++.-.+.|+||.|..++.-     +.......++..+
T Consensus        65 ~~~~~~dmv-iea-v~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vv-----g~h~fspa~~m~L  137 (380)
T KOG1683|consen   65 TGFANADMV-IEA-VFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVV-----GMHFFSPAHWMQL  137 (380)
T ss_pred             cccccccee-ccc-hhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhc-----cccccCHHHHHHH
Confidence            378888888 776 999999999999999999999999999999987789999999999876     2334455678888


Q ss_pred             HHHHHHHHhCCCcEEEEECCcccccc--ceecccccEEEEe--CCeeeeCccccccc-cCCccHHHHHhcCCChHHHHHH
Q 015541          155 YSLICKISEYKKPYISLMDGVTMGFG--IGISGHGRYRIVT--EKTLLAMPENGIGL-FPDVGFSYIAAKGPGGGSVGAY  229 (405)
Q Consensus       155 ~~l~~~i~~~~kPvIa~v~G~a~GgG--~~lal~~D~riat--e~a~f~~PE~~iGl-~P~~G~~~~L~r~~G~~~~a~~  229 (405)
                      .+++...++.+.|+.+++||.+--||  |-++.+|+||+.-  ..-..+..++..++ +|.+-.-.+ ....|.. .|-.
T Consensus       138 lEii~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~-~t~fGf~-~g~~  215 (380)
T KOG1683|consen  138 LEIILALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSL-ITKFGFR-VGER  215 (380)
T ss_pred             HHHHHhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHH-HHhcCcc-ccHH
Confidence            99999999999999999999998888  8899999999997  44445677888874 343433333 3344554 5555


Q ss_pred             HHhcCCCCCcHHHHHHcCccceecCC
Q 015541          230 LGMTGKRISTPSDALFAGLGTDYVPS  255 (405)
Q Consensus       230 l~ltG~~i~~a~eA~~~GLv~~vv~~  255 (405)
                      -+--|.-++ -.+|++-|+++.+.|.
T Consensus       216 ~L~d~~gfd-v~eal~~gl~~~~~~r  240 (380)
T KOG1683|consen  216 ALADGVGFD-VAEALAVGLGDEIGPR  240 (380)
T ss_pred             HHhhccCcc-HHHHHhhccchhccch
Confidence            556677888 8999999999999985

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=98.45  E-value=2.7e-06  Score=76.58  Aligned_cols=139  Identities=14%  Similarity=0.162  Sum_probs=96.2

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEE
Q 015541           90 AMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYI  169 (405)
Q Consensus        90 al~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvI  169 (405)
                      .++..+..-|.+.++.+++| +++.|+|.=.     |-||++....                    .+...|...++||+
T Consensus         9 ~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in-----SPGG~v~~~~--------------------~I~~~i~~~~~pvv   62 (172)
T cd07015           9 QITSYTYDQFDRYITIAEQD-NAEAIIIELD-----TPGGRADAAG--------------------NIVQRIQQSKIPVI   62 (172)
T ss_pred             EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE-----CCCCCHHHHH--------------------HHHHHHHhcCcCEE
Confidence            45567777888999988875 4677777533     2244443221                    23345667899999


Q ss_pred             EEEC---CccccccceecccccEEEEeCCeeeeCccccccccCC----cc----HHHHHh------cCCChH-HHHHHHH
Q 015541          170 SLMD---GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPD----VG----FSYIAA------KGPGGG-SVGAYLG  231 (405)
Q Consensus       170 a~v~---G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~----~G----~~~~L~------r~~G~~-~~a~~l~  231 (405)
                      +.++   |.|..+|.-++++||.+++.+++.++......|..++    ..    -++.+.      +.-|+. ..+..++
T Consensus        63 ~~v~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v  142 (172)
T cd07015          63 IYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFI  142 (172)
T ss_pred             EEEecCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            9999   9999999999999999999999999987765443220    00    011111      122321 2555566


Q ss_pred             hcCCCCCcHHHHHHcCccceecCC
Q 015541          232 MTGKRISTPSDALFAGLGTDYVPS  255 (405)
Q Consensus       232 ltG~~i~~a~eA~~~GLv~~vv~~  255 (405)
                      -....++ ++||+++|++|+++.+
T Consensus       143 ~~~~~lt-a~EA~~~G~iD~ia~~  165 (172)
T cd07015         143 TKDLSLT-PEEALKYGVIEVVARD  165 (172)
T ss_pred             HhhcCcC-HHHHHHcCCceeeeCC
Confidence            6667799 9999999999999975

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.42  E-value=1e-06  Score=78.72  Aligned_cols=136  Identities=14%  Similarity=0.075  Sum_probs=86.4

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEEE
Q 015541           91 MNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYIS  170 (405)
Q Consensus        91 l~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa  170 (405)
                      ++..+.+++.+.|..++.++.++.|+|.=.     |-||++..                    ...+...|...++|+++
T Consensus         9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~In-----SpGG~v~~--------------------~~~i~~~i~~~~~~v~~   63 (162)
T cd07013           9 VEDISANQFAAQLLFLGAVNPEKDIYLYIN-----SPGGDVFA--------------------GMAIYDTIKFIKADVVT   63 (162)
T ss_pred             ECcHHHHHHHHHHHHHhcCCCCCCEEEEEE-----CCCCcHHH--------------------HHHHHHHHHhcCCCceE
Confidence            457889999999999999877777776533     22344321                    12344567778999999


Q ss_pred             EECCccccccceeccccc--EEEEeCCeeeeCccccccccCCccHHH---------------HHhcCCChH-HHHHHHHh
Q 015541          171 LMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGFSY---------------IAAKGPGGG-SVGAYLGM  232 (405)
Q Consensus       171 ~v~G~a~GgG~~lal~~D--~riate~a~f~~PE~~iGl~P~~G~~~---------------~L~r~~G~~-~~a~~l~l  232 (405)
                      .+.|.|.++|.-|+++||  .|++.++++|.+....-|......-..               .+.+.-|.. ..-..++-
T Consensus        64 ~~~g~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~  143 (162)
T cd07013          64 IIDGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLE  143 (162)
T ss_pred             EEEeehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHc
Confidence            999999999999999999  577777777765332212110000000               111112311 12333444


Q ss_pred             cCCCCCcHHHHHHcCcccee
Q 015541          233 TGKRISTPSDALFAGLGTDY  252 (405)
Q Consensus       233 tG~~i~~a~eA~~~GLv~~v  252 (405)
                      .+.-++ |+||+++||||++
T Consensus       144 ~~~~~s-a~eA~~~GliD~i  162 (162)
T cd07013         144 RDTWLS-AREAVEYGFADTI  162 (162)
T ss_pred             CCcccc-HHHHHHcCCCCcC
Confidence            455568 9999999999975

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>PRK10949 protease 4; Provisional

Probab=98.39  E-value=5.8e-06  Score=88.40  Aligned_cols=163  Identities=17%  Similarity=0.128  Sum_probs=102.8

Q ss_pred             eCcEEEEEEcCC-----CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchH
Q 015541           74 PNGVAVITLDRP-----KALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVP  148 (405)
Q Consensus        74 ~~~v~~ItLnrp-----~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~  148 (405)
                      ++.|++|.++.+     ...+.++.   +.+.+.|+.+..|++||+|||+=..|     ||....               
T Consensus       325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInSp-----GGs~~a---------------  381 (618)
T PRK10949        325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNSP-----GGSVTA---------------  381 (618)
T ss_pred             CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecCC-----CCcHHH---------------
Confidence            456888877532     22234554   45778899999999999999987643     222211               


Q ss_pred             HHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccc------------cccccCCccHHH-
Q 015541          149 KVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN------------GIGLFPDVGFSY-  215 (405)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~------------~iGl~P~~G~~~-  215 (405)
                        ....++.+..+....|||||.+.|.|.-||.-++++||.++|.+.+..+---+            ++|+-++.-.+- 
T Consensus       382 --se~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~  459 (618)
T PRK10949        382 --SEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSP  459 (618)
T ss_pred             --HHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccc
Confidence              11223344445667899999999999999999999999999999765332111            244432211110 


Q ss_pred             ----------------------------HHh-----cCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHH
Q 015541          216 ----------------------------IAA-----KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLK  262 (405)
Q Consensus       216 ----------------------------~L~-----r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~  262 (405)
                                                  |+.     |-+...  -.+-+..|+.++ |++|++.||||++-.-++..+.+
T Consensus       460 ~~~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~--~v~~ia~Grv~t-g~~A~~~GLVD~lG~~~~ai~~a  536 (618)
T PRK10949        460 LADVSITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPE--QIDKIAQGHVWT-GQDAKANGLVDSLGDFDDAVAKA  536 (618)
T ss_pred             cCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHH--HHHHHhcCCccc-HHHHHHcCCCccCCCHHHHHHHH
Confidence                                        111     112211  122345799999 99999999999996544433333


Q ss_pred             HH
Q 015541          263 EA  264 (405)
Q Consensus       263 ~~  264 (405)
                      .+
T Consensus       537 ~~  538 (618)
T PRK10949        537 AE  538 (618)
T ss_pred             HH
Confidence            33

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.29  E-value=5.3e-06  Score=76.70  Aligned_cols=134  Identities=15%  Similarity=0.086  Sum_probs=82.6

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEE--eeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCC
Q 015541           89 NAMNLDMDIKYKSFLDEWESDPRVKCVLI--EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKK  166 (405)
Q Consensus        89 Nal~~~m~~~L~~~l~~~~~d~~v~~vvl--~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~k  166 (405)
                      ..++..+.+.+...|..++.++..+-|.|  .+.|       ||+..                    ...+...|...+.
T Consensus        38 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpG-------G~v~~--------------------g~~I~d~i~~~~~   90 (200)
T PRK00277         38 GEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG-------GSVTA--------------------GLAIYDTMQFIKP   90 (200)
T ss_pred             CEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCC-------CcHHH--------------------HHHHHHHHHhcCC
Confidence            45678899999999998886544333333  3443       34322                    1133345667788


Q ss_pred             cEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHH----------------------HHHhcCCChH
Q 015541          167 PYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFS----------------------YIAAKGPGGG  224 (405)
Q Consensus       167 PvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~----------------------~~L~r~~G~~  224 (405)
                      |+++.+.|.|.+.|.-|+++++     ++.+|.+|++.+++.+..+++                      ..+....|..
T Consensus        91 ~v~t~~~G~aaS~a~~I~~ag~-----~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~  165 (200)
T PRK00277         91 DVSTICIGQAASMGAFLLAAGA-----KGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQP  165 (200)
T ss_pred             CEEEEEEeEeccHHHHHHhcCC-----CCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence            9999999999999999888742     334444444444544333221                      1122222321


Q ss_pred             -HHHHHHHhcCCCCCcHHHHHHcCccceecCC
Q 015541          225 -SVGAYLGMTGKRISTPSDALFAGLGTDYVPS  255 (405)
Q Consensus       225 -~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~  255 (405)
                       .....++-.+.-++ |+||+++||||+++.+
T Consensus       166 ~~~i~~~~~~~~~ls-a~EA~e~GliD~Ii~~  196 (200)
T PRK00277        166 LEKIEKDTDRDNFMS-AEEAKEYGLIDEVLTK  196 (200)
T ss_pred             HHHHHHHhhCCcccc-HHHHHHcCCccEEeec
Confidence             13333444456788 9999999999999975

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=98.17  E-value=0.00016  Score=69.29  Aligned_cols=140  Identities=18%  Similarity=0.128  Sum_probs=93.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCc
Q 015541           88 LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP  167 (405)
Q Consensus        88 ~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP  167 (405)
                      .-+++++-.+...+.++.+.+. ++-+|-|.=. ++++. |.+-.              ..........+...+....+|
T Consensus        76 ~G~~~~~g~rKa~R~~~lA~~~-~lPvV~lvDt-pGa~~-g~~aE--------------~~G~~~~ia~~~~~~s~~~VP  138 (256)
T PRK12319         76 FGQPHPEGYRKALRLMKQAEKF-GRPVVTFINT-AGAYP-GVGAE--------------ERGQGEAIARNLMEMSDLKVP  138 (256)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEEC-CCcCC-CHhHH--------------hccHHHHHHHHHHHHhCCCCC
Confidence            4678899999999999888776 3555555433 23443 33211              001223445666778899999


Q ss_pred             EEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCCCCCcHHHHHHcC
Q 015541          168 YISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAG  247 (405)
Q Consensus       168 vIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~G  247 (405)
                      +|++|-|.|.|||......||++++.+++.|+.       .++-|++..+-+-......+.+.+    +++ +.++++.|
T Consensus       139 ~IsVI~G~~~gGgA~a~~~~D~v~m~~~a~~~v-------~~pe~~a~il~~~~~~a~~aa~~~----~~~-a~~l~~~g  206 (256)
T PRK12319        139 IIAIIIGEGGSGGALALAVADQVWMLENTMYAV-------LSPEGFASILWKDGSRATEAAELM----KIT-AGELLEMG  206 (256)
T ss_pred             EEEEEeCCcCcHHHHHhhcCCEEEEecCceEEE-------cCHHHHHHHHhcCcccHHHHHHHc----CCC-HHHHHHCC
Confidence            999999999888887777999999999988775       233333333322211111333332    778 99999999


Q ss_pred             ccceecCCC
Q 015541          248 LGTDYVPSG  256 (405)
Q Consensus       248 Lv~~vv~~~  256 (405)
                      +||+|||..
T Consensus       207 ~iD~ii~e~  215 (256)
T PRK12319        207 VVDKVIPEH  215 (256)
T ss_pred             CCcEecCCC
Confidence            999999853

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=98.13  E-value=0.00018  Score=70.56  Aligned_cols=139  Identities=12%  Similarity=0.080  Sum_probs=93.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCc
Q 015541           88 LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP  167 (405)
Q Consensus        88 ~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP  167 (405)
                      .-+++++-.+...+.++.+++.. +-+|-|-=. +++++ |.+-.+              .............+....+|
T Consensus       132 ~G~~~p~g~rKa~Rlm~lA~~f~-lPIItlvDT-pGA~~-G~~AE~--------------~G~~~aiar~l~~~a~~~VP  194 (322)
T CHL00198        132 FGMPSPGGYRKALRLMKHANKFG-LPILTFIDT-PGAWA-GVKAEK--------------LGQGEAIAVNLREMFSFEVP  194 (322)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeC-CCcCc-CHHHHH--------------HhHHHHHHHHHHHHHcCCCC
Confidence            46788999999999999888753 445555333 23554 422111              01123334556667889999


Q ss_pred             EEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCCCCCcHHHHHHcC
Q 015541          168 YISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAG  247 (405)
Q Consensus       168 vIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~G  247 (405)
                      +|++|-|.|-|||.-....||++++.+++.|+.      +-|.++++.++. -.   ..+.+ +-..-+++ |+|.++.|
T Consensus       195 ~IsVViGeggsGGAlal~~aD~V~m~e~a~~sV------isPEg~a~Il~~-d~---~~a~~-aA~~~~it-a~dL~~~g  262 (322)
T CHL00198        195 IICTIIGEGGSGGALGIGIGDSIMMLEYAVYTV------ATPEACAAILWK-DS---KKSLD-AAEALKIT-SEDLKVLG  262 (322)
T ss_pred             EEEEEeCcccHHHHHhhhcCCeEEEeCCeEEEe------cCHHHHHHHHhc-ch---hhHHH-HHHHcCCC-HHHHHhCC
Confidence            999999999888765445699999999998875      334444444443 22   13333 23346788 99999999


Q ss_pred             ccceecCC
Q 015541          248 LGTDYVPS  255 (405)
Q Consensus       248 Lv~~vv~~  255 (405)
                      +||+|+|.
T Consensus       263 iiD~ii~E  270 (322)
T CHL00198        263 IIDEIIPE  270 (322)
T ss_pred             CCeEeccC
Confidence            99999984

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=98.11  E-value=0.00029  Score=69.18  Aligned_cols=139  Identities=16%  Similarity=0.093  Sum_probs=90.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCc
Q 015541           88 LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP  167 (405)
Q Consensus        88 ~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP  167 (405)
                      .-+++++-.+...+.++.+++- .+-+|-|.=. +++++ |.+..+.              ........+...+....+|
T Consensus       129 ~G~~~p~g~rKa~R~m~lA~~f-~iPvVtlvDT-pGa~~-g~~aE~~--------------G~~~aia~~l~a~s~~~VP  191 (316)
T TIGR00513       129 FGMPAPEGYRKALRLMKMAERF-KMPIITFIDT-PGAYP-GIGAEER--------------GQSEAIARNLREMARLGVP  191 (316)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEEC-CCCCC-CHHHHHH--------------HHHHHHHHHHHHHHcCCCC
Confidence            4678899999999999888875 3555555433 23443 3332111              1123345666678899999


Q ss_pred             EEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCCCCCcHHHHHHcC
Q 015541          168 YISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAG  247 (405)
Q Consensus       168 vIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~G  247 (405)
                      +|++|-|.|.|||......||++++.+++.++.       +++-|+...|-+-......+.+    -..++ +.++++.|
T Consensus       192 ~IsVViGeggsGGAla~~~aD~v~m~~~a~~sV-------isPEg~a~Il~kd~~~a~~aae----~~~~t-a~~l~~~G  259 (316)
T TIGR00513       192 VICTVIGEGGSGGALAIGVGDKVNMLEYSTYSV-------ISPEGCAAILWKDASKAPKAAE----AMKIT-APDLKELG  259 (316)
T ss_pred             EEEEEecccccHHHhhhccCCEEEEecCceEEe-------cCHHHHHHHhccchhhHHHHHH----HccCC-HHHHHHCC
Confidence            999999999777765444699999999887764       3333444334332111112222    25678 99999999


Q ss_pred             ccceecCC
Q 015541          248 LGTDYVPS  255 (405)
Q Consensus       248 Lv~~vv~~  255 (405)
                      +||.|+|.
T Consensus       260 ~iD~II~e  267 (316)
T TIGR00513       260 LIDSIIPE  267 (316)
T ss_pred             CCeEeccC
Confidence            99999984

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=98.05  E-value=0.00043  Score=69.81  Aligned_cols=138  Identities=15%  Similarity=0.102  Sum_probs=91.1

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcE
Q 015541           89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPY  168 (405)
Q Consensus        89 Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPv  168 (405)
                      .+++++-.+...+.++.++.. ++-+|-|.=.. +++ .|.+-.+              .........+...+....+|+
T Consensus       200 G~~~peGyRKAlR~mklAekf-~lPIVtLVDTp-GA~-pG~~AEe--------------~Gqa~aIAr~l~ams~l~VPi  262 (431)
T PLN03230        200 AMPQPNGYRKALRFMRHAEKF-GFPILTFVDTP-GAY-AGIKAEE--------------LGQGEAIAFNLREMFGLRVPI  262 (431)
T ss_pred             CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCC-CcC-CCHHHHH--------------HhHHHHHHHHHHHHhcCCCCE
Confidence            568899999999999998876 34555554332 233 3333221              112233456677788999999


Q ss_pred             EEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCCCCCcHHHHHHcCc
Q 015541          169 ISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGL  248 (405)
Q Consensus       169 Ia~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GL  248 (405)
                      |++|-|.+-|||......||++++.+++.++.      +-|.++++.++....-. ..+.+    .-.++ |.++++.|+
T Consensus       263 ISVViGeGgSGGAlalg~aD~VlMle~A~ysV------isPEgaAsILwkd~~~A-~eAAe----alkit-A~dL~~~Gi  330 (431)
T PLN03230        263 IATVIGEGGSGGALAIGCGNRMLMMENAVYYV------ASPEACAAILWKSAAAA-PKAAE----ALRIT-AAELVKLGV  330 (431)
T ss_pred             EEEEeCCCCcHHHHHhhcCCEEEEecCCEEEe------cCHHHHHHHHhccccch-HHHHH----HcCCC-HHHHHhCCC
Confidence            99999999666644444689999999987664      33445555444332211 12333    34899 999999999


Q ss_pred             cceecCC
Q 015541          249 GTDYVPS  255 (405)
Q Consensus       249 v~~vv~~  255 (405)
                      ||+|||.
T Consensus       331 ID~II~E  337 (431)
T PLN03230        331 VDEIVPE  337 (431)
T ss_pred             CeEeccC
Confidence            9999984

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.03  E-value=2.7e-05  Score=70.21  Aligned_cols=134  Identities=16%  Similarity=0.058  Sum_probs=91.0

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEEE
Q 015541           91 MNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYIS  170 (405)
Q Consensus        91 l~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa  170 (405)
                      ++.++..++...+..+..++..+.|+|.=..     -|||+..-                    ..+...|...+.|+++
T Consensus        18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~inS-----pGG~v~~~--------------------~~i~~~l~~~~~~v~t   72 (171)
T cd07017          18 IDDEVANLIIAQLLYLESEDPKKPIYLYINS-----PGGSVTAG--------------------LAIYDTMQYIKPPVST   72 (171)
T ss_pred             EcHHHHHHHHHHHHHHHccCCCCceEEEEEC-----CCCCHHHH--------------------HHHHHHHHhcCCCEEE
Confidence            4678889999999999987665555554221     23343321                    1333456677899999


Q ss_pred             EECCccccccceeccccc--EEEEeCCeeeeCccccccccCCccHHH-----------------HHhcCCChH-HHHHHH
Q 015541          171 LMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGFSY-----------------IAAKGPGGG-SVGAYL  230 (405)
Q Consensus       171 ~v~G~a~GgG~~lal~~D--~riate~a~f~~PE~~iGl~P~~G~~~-----------------~L~r~~G~~-~~a~~l  230 (405)
                      .+.|.|.++|.-+++++|  .|++.+++.|.+-+...+..-.  ...                 .+....|.. ..-..+
T Consensus        73 ~~~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~--~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~  150 (171)
T cd07017          73 ICLGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQ--ASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKD  150 (171)
T ss_pred             EEEeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            999999999999999999  7999999999887766544222  111                 111112321 133344


Q ss_pred             HhcCCCCCcHHHHHHcCcccee
Q 015541          231 GMTGKRISTPSDALFAGLGTDY  252 (405)
Q Consensus       231 ~ltG~~i~~a~eA~~~GLv~~v  252 (405)
                      +-.+.-++ |+||+++||||+|
T Consensus       151 ~~~~~~lt-a~EA~e~GiiD~V  171 (171)
T cd07017         151 TDRDRYMS-AEEAKEYGLIDKI  171 (171)
T ss_pred             hhCCcccc-HHHHHHcCCCccC
Confidence            44677788 9999999999975

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.02  E-value=6.9e-05  Score=69.67  Aligned_cols=137  Identities=14%  Similarity=0.061  Sum_probs=93.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEE--eeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCC
Q 015541           89 NAMNLDMDIKYKSFLDEWESDPRVKCVLI--EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKK  166 (405)
Q Consensus        89 Nal~~~m~~~L~~~l~~~~~d~~v~~vvl--~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~k  166 (405)
                      .-++..+..++...|..++..+..+.|.|  .+.|       ||+..-                    ..+...|..++.
T Consensus        42 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG-------G~v~~g--------------------~~I~d~i~~~~~   94 (207)
T PRK12553         42 GQVDDASANDVMAQLLVLESIDPDRDITLYINSPG-------GSVTAG--------------------DAIYDTIQFIRP   94 (207)
T ss_pred             ceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCC-------CcHHHH--------------------HHHHHHHHhcCC
Confidence            35678999999999999987543344333  4443       443221                    234446777888


Q ss_pred             cEEEEECCccccccceeccccc--EEEEeCCeeeeCccccc-cccCCccHH------------------HHHhcCCChH-
Q 015541          167 PYISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGI-GLFPDVGFS------------------YIAAKGPGGG-  224 (405)
Q Consensus       167 PvIa~v~G~a~GgG~~lal~~D--~riate~a~f~~PE~~i-Gl~P~~G~~------------------~~L~r~~G~~-  224 (405)
                      |+++.+.|.|.+.|.-|+++||  .|++.+++.|.+-.... |.  ..|-.                  ..+.+.-|.. 
T Consensus        95 ~v~t~~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~--~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~  172 (207)
T PRK12553         95 DVQTVCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGG--IRGQASDLEIQAREILRMRERLERILAEHTGQSV  172 (207)
T ss_pred             CcEEEEEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCC--CccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence            9999999999999999999998  59999999988866543 21  11211                  1122223321 


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCC
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPS  255 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~  255 (405)
                      .....++-.+.-++ |+||+++||||+++.+
T Consensus       173 e~i~~~~~~~~~lt-a~EA~e~GliD~I~~~  202 (207)
T PRK12553        173 EKIRKDTDRDKWLT-AEEAKDYGLVDQIITS  202 (207)
T ss_pred             HHHHHHHhcCcccc-HHHHHHcCCccEEcCc
Confidence            13344555677898 9999999999999965

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=97.97  E-value=0.00054  Score=67.33  Aligned_cols=139  Identities=15%  Similarity=0.106  Sum_probs=92.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCc
Q 015541           88 LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP  167 (405)
Q Consensus        88 ~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP  167 (405)
                      .-+++++-.+...+.++.+++. ++-+|-|.=. +++++ |.+-.+              .........+...+....+|
T Consensus       129 ~G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDT-pGa~~-G~~aE~--------------~G~~~aia~~l~~~a~~~VP  191 (319)
T PRK05724        129 FGMPRPEGYRKALRLMKMAEKF-GLPIITFIDT-PGAYP-GIGAEE--------------RGQSEAIARNLREMARLKVP  191 (319)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeC-CCCCC-CHHHHh--------------ccHHHHHHHHHHHHhCCCCC
Confidence            4568899999999999888875 4555555433 23444 432210              01234445677788999999


Q ss_pred             EEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCCCCCcHHHHHHcC
Q 015541          168 YISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAG  247 (405)
Q Consensus       168 vIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~G  247 (405)
                      +|++|-|.+.|||.-....||++++.+++.|+.       +++-|++..|-+-..   .+.+.+= ...++ +.++++.|
T Consensus       192 ~IsVIiGeg~sGGAla~~~aD~v~m~~~A~~sv-------isPEg~a~Il~~~~~---~a~~aae-~~~it-a~~l~~~g  259 (319)
T PRK05724        192 IICTVIGEGGSGGALAIGVGDRVLMLEYSTYSV-------ISPEGCASILWKDAS---KAPEAAE-AMKIT-AQDLKELG  259 (319)
T ss_pred             EEEEEeCCccHHHHHHHhccCeeeeecCceEee-------cCHHHHHHHHhcCch---hHHHHHH-HcCCC-HHHHHHCC
Confidence            999999999777764444599999988887654       444444444433322   3333222 55688 99999999


Q ss_pred             ccceecCC
Q 015541          248 LGTDYVPS  255 (405)
Q Consensus       248 Lv~~vv~~  255 (405)
                      +||.|+|.
T Consensus       260 ~iD~II~E  267 (319)
T PRK05724        260 IIDEIIPE  267 (319)
T ss_pred             CceEeccC
Confidence            99999984

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=97.90  E-value=0.0008  Score=71.96  Aligned_cols=139  Identities=12%  Similarity=0.073  Sum_probs=92.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCc
Q 015541           88 LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP  167 (405)
Q Consensus        88 ~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP  167 (405)
                      .-+++++-.+...+.++.++... +-+|-|-=. +++++ |.+..+.              ............+....+|
T Consensus       220 fG~~~peGyRKAlRlmkLAekfg-LPIVtLVDT-pGA~p-G~~AEe~--------------Gq~~aIArnl~amasl~VP  282 (762)
T PLN03229        220 FGMPTPHGYRKALRMMYYADHHG-FPIVTFIDT-PGAYA-DLKSEEL--------------GQGEAIAHNLRTMFGLKVP  282 (762)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEEC-CCcCC-CchhHHH--------------hHHHHHHHHHHHHhCCCCC
Confidence            45788888898999888887753 445544322 23444 3332221              1123445666778899999


Q ss_pred             EEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCCCCCcHHHHHHcC
Q 015541          168 YISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAG  247 (405)
Q Consensus       168 vIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~G  247 (405)
                      +|++|-|.|.|||.-....||++++.+++.|+.      +-|.++++..+ +-..   .+.+ +-..-+|+ |+|.+++|
T Consensus       283 ~ISVViGeggSGGAlA~g~aD~VlMle~A~~sV------isPEgaAsILw-kd~~---~A~e-AAe~lkiT-a~dL~~lG  350 (762)
T PLN03229        283 IVSIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILW-KSAK---AAPK-AAEKLRIT-AQELCRLQ  350 (762)
T ss_pred             EEEEEeCCcchHHHHHhhcCCEEEEecCCeEEe------cCHHHHHHHHh-cCcc---cHHH-HHHHcCCC-HHHHHhCC
Confidence            999999999888876666799999998887554      23444444433 3322   2332 33456788 99999999


Q ss_pred             ccceecCC
Q 015541          248 LGTDYVPS  255 (405)
Q Consensus       248 Lv~~vv~~  255 (405)
                      +||+|+|.
T Consensus       351 iiD~IIpE  358 (762)
T PLN03229        351 IADGIIPE  358 (762)
T ss_pred             CCeeeccC
Confidence            99999984

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.84  E-value=0.00024  Score=65.58  Aligned_cols=138  Identities=16%  Similarity=0.061  Sum_probs=85.5

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEE--EeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCc
Q 015541           90 AMNLDMDIKYKSFLDEWESDPRVKCVL--IEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP  167 (405)
Q Consensus        90 al~~~m~~~L~~~l~~~~~d~~v~~vv--l~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP  167 (405)
                      .++..+...+.+.|..++..+..+.|+  |.+.|       ||+..                    ...+...|...+.|
T Consensus        31 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG-------G~v~a--------------------g~aI~d~i~~~~~~   83 (197)
T PRK14512         31 EINKDLSELFQEKILLLEALDSKKPIFVYIDSEG-------GDIDA--------------------GFAIFNMIRFVKPK   83 (197)
T ss_pred             EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC-------CCHHH--------------------HHHHHHHHHhCCCC
Confidence            356788888888888877622233333  34444       44321                    12344467778999


Q ss_pred             EEEEECCccccccceecccccE--EEEeCCeeeeCccccccccCCccHH----HH-----------HhcCCChH-HHHHH
Q 015541          168 YISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFS----YI-----------AAKGPGGG-SVGAY  229 (405)
Q Consensus       168 vIa~v~G~a~GgG~~lal~~D~--riate~a~f~~PE~~iGl~P~~G~~----~~-----------L~r~~G~~-~~a~~  229 (405)
                      |++.++|.|.+.|.-|+++||.  |++.++++|-+-...-|+.-...-.    ..           ++..-|.. .....
T Consensus        84 V~t~v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~  163 (197)
T PRK14512         84 VFTIGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEK  163 (197)
T ss_pred             EEEEEEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence            9999999999999999999985  8999988875544332221111100    01           11111211 12233


Q ss_pred             HHhcCCCCCcHHHHHHcCccceecCC
Q 015541          230 LGMTGKRISTPSDALFAGLGTDYVPS  255 (405)
Q Consensus       230 l~ltG~~i~~a~eA~~~GLv~~vv~~  255 (405)
                      ++-....++ |+||+++||||+|++.
T Consensus       164 ~~~~d~~lt-a~EA~~yGliD~I~~~  188 (197)
T PRK14512        164 DTDRDFWLD-SSSAVKYGLVFEVVET  188 (197)
T ss_pred             hhhcCcccC-HHHHHHcCCccEeecC
Confidence            333345688 9999999999999975

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=97.81  E-value=0.00018  Score=71.25  Aligned_cols=81  Identities=16%  Similarity=0.192  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEECCc
Q 015541           96 DIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGV  175 (405)
Q Consensus        96 ~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~  175 (405)
                      .+.+.+.|+.+..|+++++|+|.=..|     ||..-.                 -...++.+.++..-. ||++.|+++
T Consensus        82 ~~~~~~~l~~~~~~~~vk~vvL~inSP-----GG~v~a-----------------s~~i~~~l~~l~~~~-PV~v~v~~~  138 (317)
T COG0616          82 GDDIEEILRAARADPSVKAVVLRINSP-----GGSVVA-----------------SELIARALKRLRAKK-PVVVSVGGY  138 (317)
T ss_pred             HHHHHHHHHHHhcCCCCceEEEEEECc-----CCchhH-----------------HHHHHHHHHHHhhcC-CEEEEECCe
Confidence            455677888899999999999974332     222211                 112334444455544 999999999


Q ss_pred             cccccceecccccEEEEeCCeeee
Q 015541          176 TMGFGIGISGHGRYRIVTEKTLLA  199 (405)
Q Consensus       176 a~GgG~~lal~~D~riate~a~f~  199 (405)
                      |+.||..+|++||.++|++.+..|
T Consensus       139 AASGGY~IA~aAd~I~a~p~si~G  162 (317)
T COG0616         139 AASGGYYIALAADKIVADPSSITG  162 (317)
T ss_pred             ecchhhhhhccCCEEEecCCceee
Confidence            999999999999999999998755

>PRK11778 putative inner membrane peptidase; Provisional

Probab=97.78  E-value=0.00015  Score=71.63  Aligned_cols=158  Identities=13%  Similarity=0.013  Sum_probs=92.3

Q ss_pred             eCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHH
Q 015541           74 PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTA  153 (405)
Q Consensus        74 ~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~  153 (405)
                      ++.|++|.++.+=..+. ...+.+++...+.....+   .+|||+-.+|     ||.+.....                 
T Consensus        89 ~~~v~VI~~~G~I~~~~-~~~l~e~i~a~l~~A~~~---~aVvLridSp-----GG~v~~s~~-----------------  142 (330)
T PRK11778         89 KPRLFVLDFKGDIDASE-VESLREEITAILAVAKPG---DEVLLRLESP-----GGVVHGYGL-----------------  142 (330)
T ss_pred             CCeEEEEEEEEEECCCc-chhhHHHHHHHHHhccCC---CeEEEEEeCC-----CCchhHHHH-----------------
Confidence            35788888885522111 123445666655555443   4677765543     232221100                 


Q ss_pred             HHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCcccc------------ccccC---------Ccc
Q 015541          154 EYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG------------IGLFP---------DVG  212 (405)
Q Consensus       154 ~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~------------iGl~P---------~~G  212 (405)
                      ....+.++....||+|+.+++.|.-||..++++||.++|.+.+..+---+.            +|+-+         +.+
T Consensus       143 a~~~l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~  222 (330)
T PRK11778        143 AASQLQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTL  222 (330)
T ss_pred             HHHHHHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCC
Confidence            111133466778999999999999999999999999999998876543321            22210         000


Q ss_pred             HH---------------------HHHhcCC-ChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCh
Q 015541          213 FS---------------------YIAAKGP-GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNL  258 (405)
Q Consensus       213 ~~---------------------~~L~r~~-G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l  258 (405)
                      ..                     .|+...- +++..-.+-+.+|+.++ |++|++.||||++...+++
T Consensus       223 ~pf~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~-g~~Al~~GLVD~Ig~~dd~  289 (330)
T PRK11778        223 TLFGENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWY-GQQALELGLVDEIQTSDDY  289 (330)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcC-HHHHHHCCCCCcCCCHHHH
Confidence            00                     0110000 10012233456899999 9999999999999765444

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=97.72  E-value=0.0013  Score=63.54  Aligned_cols=152  Identities=15%  Similarity=0.065  Sum_probs=90.7

Q ss_pred             cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcC----CCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHH
Q 015541           76 GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESD----PRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVF  151 (405)
Q Consensus        76 ~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d----~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~  151 (405)
                      .|.++-.+.--..-++....-+.+.++++.+.+|    ..+-+|.|.-+| ++     -+.+-..         .... .
T Consensus        60 ~v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSg-Ga-----RlqEg~~---------~L~~-~  123 (274)
T TIGR03133        60 PVVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTG-GV-----RLQEANA---------GLIA-I  123 (274)
T ss_pred             EEEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCC-Cc-----ChhhhHH---------HHHH-H
Confidence            3555555555455678888888888888888652    123356665443 22     2222111         0001 1


Q ss_pred             HHHHHHHHHHHhCCCcEEEEECCc--cccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH-HHHH
Q 015541          152 TAEYSLICKISEYKKPYISLMDGV--TMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG-SVGA  228 (405)
Q Consensus       152 ~~~~~l~~~i~~~~kPvIa~v~G~--a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~-~~a~  228 (405)
                      ...+..+..+... .|+|+++-|.  |.||+..++..||++|+++++++++.           +....-...|.. --..
T Consensus       124 a~i~~~~~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~a-----------GP~VIe~~~G~e~~~~~  191 (274)
T TIGR03133       124 AEIMRAILDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLS-----------GPEVIEQEAGVEEFDSR  191 (274)
T ss_pred             HHHHHHHHHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEecc-----------CHHHHHHhcCCCccCHH
Confidence            1222233344455 9999999999  89999999999999999998877761           111111122210 0122


Q ss_pred             HHHhcCCCCCcHHHHHHcCccceecCCC
Q 015541          229 YLGMTGKRISTPSDALFAGLGTDYVPSG  256 (405)
Q Consensus       229 ~l~ltG~~i~~a~eA~~~GLv~~vv~~~  256 (405)
                      +-.|.-+.+. ++.....|++|.+++++
T Consensus       192 d~~l~~~~lG-G~~~~~sG~~D~~v~dd  218 (274)
T TIGR03133       192 DRALVWRTTG-GKHRFLSGDADVLVEDD  218 (274)
T ss_pred             Hhcccccccc-hHhHhhcccceEEeCCH
Confidence            2333344566 67888899999999874

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.69  E-value=9.4e-05  Score=67.13  Aligned_cols=137  Identities=16%  Similarity=0.114  Sum_probs=87.0

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCce--EEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcE
Q 015541           91 MNLDMDIKYKSFLDEWESDPRVK--CVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPY  168 (405)
Q Consensus        91 l~~~m~~~L~~~l~~~~~d~~v~--~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPv  168 (405)
                      ++.++...+...|..++..+..+  .|.|.+.|       ||+..                    ...+...|..++.|+
T Consensus        25 I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpG-------G~v~~--------------------g~~i~~~i~~~~~~v   77 (182)
T PF00574_consen   25 IDEESANRLISQLLYLENEDKNKPINIYINSPG-------GDVDA--------------------GLAIYDAIRSSKAPV   77 (182)
T ss_dssp             BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECE-------BCHHH--------------------HHHHHHHHHHSSSEE
T ss_pred             cCHHHHHHHHHHHHHHhccCCCceEEEEEcCCC-------CccHH--------------------HHHHHHHHHhcCCCe
Confidence            57889999998887774322222  33445554       44432                    224555788999999


Q ss_pred             EEEECCccccccceecccccE--EEEeCCeeeeCccccccccCCccHHH----HHh-----------cCCChH-HHHHHH
Q 015541          169 ISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFSY----IAA-----------KGPGGG-SVGAYL  230 (405)
Q Consensus       169 Ia~v~G~a~GgG~~lal~~D~--riate~a~f~~PE~~iGl~P~~G~~~----~L~-----------r~~G~~-~~a~~l  230 (405)
                      ++.+.|.|.+.|.-++++|+.  |++.+++.|.+-+...+..-...-..    .+.           ...|.. ..-..+
T Consensus        78 ~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~  157 (182)
T PF00574_consen   78 TTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEEL  157 (182)
T ss_dssp             EEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHH
T ss_pred             EEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence            999999999999999999999  99999999999887655532111100    111           111211 122222


Q ss_pred             HhcCCCCCcHHHHHHcCccceecCC
Q 015541          231 GMTGKRISTPSDALFAGLGTDYVPS  255 (405)
Q Consensus       231 ~ltG~~i~~a~eA~~~GLv~~vv~~  255 (405)
                      +-...-++ |+||+++||||+|+.+
T Consensus       158 ~~~~~~l~-a~EA~~~GiiD~I~~~  181 (182)
T PF00574_consen  158 MDRDTWLS-AEEALEYGIIDEIIES  181 (182)
T ss_dssp             CSSTEEEE-HHHHHHHTSSSEEESS
T ss_pred             HhCCcccc-HHHHHHcCCCCEeccC
Confidence            22334477 9999999999999853

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=97.69  E-value=0.00053  Score=62.97  Aligned_cols=140  Identities=14%  Similarity=0.036  Sum_probs=87.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcE
Q 015541           89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPY  168 (405)
Q Consensus        89 Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPv  168 (405)
                      ..++..+.+++...|..++.++..+-|.|.=.     |-|||+..-                    ..+...|...+.|+
T Consensus        33 g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~In-----SpGG~v~~g--------------------~~I~d~l~~~~~~v   87 (191)
T TIGR00493        33 GEVNDSVANLIVAQLLFLEAEDPEKDIYLYIN-----SPGGSITAG--------------------LAIYDTMQFIKPDV   87 (191)
T ss_pred             cEEChHHHHHHHHHHHHhhccCCCCCEEEEEE-----CCCCCHHHH--------------------HHHHHHHHhcCCCE
Confidence            34567788888888888887554444444322     124454211                    13333566677788


Q ss_pred             EEEECCccccccceeccccc--EEEEeCCeeeeCcccccccc---CCccH-H-----------HHHhcCCChH-HHHHHH
Q 015541          169 ISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLF---PDVGF-S-----------YIAAKGPGGG-SVGAYL  230 (405)
Q Consensus       169 Ia~v~G~a~GgG~~lal~~D--~riate~a~f~~PE~~iGl~---P~~G~-~-----------~~L~r~~G~~-~~a~~l  230 (405)
                      .+.+.|.|.+.|.-|++++|  .|++.++++|.+-+..-|..   -+..- .           ..+.+.-|.. .....+
T Consensus        88 ~t~~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~  167 (191)
T TIGR00493        88 STICIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKD  167 (191)
T ss_pred             EEEEEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            88889999999988888765  69999999988866543321   11110 0           0122222321 133444


Q ss_pred             HhcCCCCCcHHHHHHcCccceecC
Q 015541          231 GMTGKRISTPSDALFAGLGTDYVP  254 (405)
Q Consensus       231 ~ltG~~i~~a~eA~~~GLv~~vv~  254 (405)
                      +-.+..++ |+||+++||||+++.
T Consensus       168 ~~~~~~lt-a~EA~~~GliD~ii~  190 (191)
T TIGR00493       168 TERDFFMS-AEEAKEYGLIDSVLT  190 (191)
T ss_pred             hhCCccCc-HHHHHHcCCccEEec
Confidence            45566788 999999999999974

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=97.65  E-value=0.00069  Score=62.62  Aligned_cols=139  Identities=11%  Similarity=0.050  Sum_probs=90.8

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEE--EeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCC
Q 015541           89 NAMNLDMDIKYKSFLDEWESDPRVKCVL--IEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKK  166 (405)
Q Consensus        89 Nal~~~m~~~L~~~l~~~~~d~~v~~vv--l~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~k  166 (405)
                      .-+|.++.+++...|-.++.++..+-|.  |.+.|       ||+..                    ...+...|...+.
T Consensus        37 ~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpG-------G~v~~--------------------g~aIyd~m~~~~~   89 (200)
T CHL00028         37 QEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPG-------GSVIS--------------------GLAIYDTMQFVKP   89 (200)
T ss_pred             CeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCC-------cchhh--------------------HHHHHHHHHhcCC
Confidence            4578899999999998887544334333  34544       33321                    1234456778899


Q ss_pred             cEEEEECCccccccceeccccc--EEEEeCCeeeeCccccccccCCccHHH-----------------HHhcCCChH-HH
Q 015541          167 PYISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGFSY-----------------IAAKGPGGG-SV  226 (405)
Q Consensus       167 PvIa~v~G~a~GgG~~lal~~D--~riate~a~f~~PE~~iGl~P~~G~~~-----------------~L~r~~G~~-~~  226 (405)
                      ||.+.+.|.|.+.|.-|++++|  .|++.++++|-+-....|+.-+- ++.                 .+.+.-|.. ..
T Consensus        90 ~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~-a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~  168 (200)
T CHL00028         90 DVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQ-ASEFVLEAEELLKLRETITRVYAQRTGKPLWV  168 (200)
T ss_pred             CEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHH
Confidence            9999999999999999999998  69999999988876654522111 111                 111111211 12


Q ss_pred             HHHHHhcCCCCCcHHHHHHcCccceecCCC
Q 015541          227 GAYLGMTGKRISTPSDALFAGLGTDYVPSG  256 (405)
Q Consensus       227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~  256 (405)
                      -.+++-...-++ |+||+++||||+|+.+.
T Consensus       169 i~~~~~r~~~lt-a~EA~eyGliD~I~~~~  197 (200)
T CHL00028        169 ISEDMERDVFMS-ATEAKAYGIVDLVAVNN  197 (200)
T ss_pred             HHHHhhcCccCC-HHHHHHcCCCcEEeecC
Confidence            223333344588 99999999999999754

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=97.40  E-value=0.0017  Score=63.48  Aligned_cols=108  Identities=18%  Similarity=0.130  Sum_probs=71.7

Q ss_pred             cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC----CceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHH
Q 015541           76 GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDP----RVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVF  151 (405)
Q Consensus        76 ~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~----~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~  151 (405)
                      .|.++-.+.-=..-++.....+.+..+++.+.++.    -+-+|+|.-+| +     +-+.+-..         .... .
T Consensus        69 ~v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSG-G-----aRlqEg~~---------~L~~-~  132 (301)
T PRK07189         69 PVVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETG-G-----VRLQEANA---------GLAA-I  132 (301)
T ss_pred             EEEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC-C-----cCccchHH---------HHHH-H
Confidence            35566666555667888888899999998887764    15566665443 2     22221110         0000 1


Q ss_pred             HHHHHHHHHHHhCCCcEEEEECCc--cccccceecccccEEEEeCCeeeeC
Q 015541          152 TAEYSLICKISEYKKPYISLMDGV--TMGFGIGISGHGRYRIVTEKTLLAM  200 (405)
Q Consensus       152 ~~~~~l~~~i~~~~kPvIa~v~G~--a~GgG~~lal~~D~riate~a~f~~  200 (405)
                      ...+..+..+... +|+|+++-|.  |+||+..++..||++|+++++.+++
T Consensus       133 a~i~~~~~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igl  182 (301)
T PRK07189        133 AEIMRAIVDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGL  182 (301)
T ss_pred             HHHHHHHHHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEec
Confidence            1222333344555 9999999999  9999999999999999999887776

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.37  E-value=0.0019  Score=60.50  Aligned_cols=138  Identities=9%  Similarity=0.010  Sum_probs=85.9

Q ss_pred             CCCCHHHHHHHHHHHHHHhc---CCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCC
Q 015541           89 NAMNLDMDIKYKSFLDEWES---DPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYK  165 (405)
Q Consensus        89 Nal~~~m~~~L~~~l~~~~~---d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  165 (405)
                      -.++..+.+.+...|..++.   +.++. |.|.+.|+       ++..                    ...+...|...+
T Consensus        61 ~~Idd~~a~~i~aqLl~L~~~~~~~~I~-lyINSpGG-------sv~a--------------------GlaIyd~m~~~~  112 (221)
T PRK14514         61 TQIDDYTANTIQAQLLYLDSVDPGKDIS-IYINSPGG-------SVYA--------------------GLGIYDTMQFIS  112 (221)
T ss_pred             CEEcHHHHHHHHHHHHHHhccCCCCCEE-EEEECCCc-------chhh--------------------HHHHHHHHHhcC
Confidence            45678888888887777764   23343 33455552       2211                    113344677788


Q ss_pred             CcEEEEECCccccccceecccccE--EEEeCCeeeeCccccccccCCccHH----H-----------HHhcCCChH-HHH
Q 015541          166 KPYISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFS----Y-----------IAAKGPGGG-SVG  227 (405)
Q Consensus       166 kPvIa~v~G~a~GgG~~lal~~D~--riate~a~f~~PE~~iGl~P~~G~~----~-----------~L~r~~G~~-~~a  227 (405)
                      -||.+.+.|.|.+.|.-|++++|.  |++.++++|-+-...-|......-.    .           .+++..|.. ..-
T Consensus       113 ~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I  192 (221)
T PRK14514        113 SDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKV  192 (221)
T ss_pred             CCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence            899999999999999999999986  8898988887766543332111100    0           011112321 022


Q ss_pred             HHHHhcCCCCCcHHHHHHcCccceecCC
Q 015541          228 AYLGMTGKRISTPSDALFAGLGTDYVPS  255 (405)
Q Consensus       228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~  255 (405)
                      ..++-...-++ |+||+++||||+|+..
T Consensus       193 ~~~~~rd~wmt-A~EA~eyGliD~Vi~~  219 (221)
T PRK14514        193 WADSDRDYWMT-AQEAKEYGMIDEVLIK  219 (221)
T ss_pred             HHHhhcCccCC-HHHHHHcCCccEEeec
Confidence            22233344578 9999999999999864

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=97.34  E-value=0.0012  Score=63.10  Aligned_cols=94  Identities=15%  Similarity=0.137  Sum_probs=77.3

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcE
Q 015541           89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPY  168 (405)
Q Consensus        89 Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPv  168 (405)
                      +-++.+..+.+.++++...++..+ .++|...|       |++.                    ...++...|.+++.|+
T Consensus        70 ~~I~i~dse~v~raI~~~~~~~~I-dLii~TpG-------G~v~--------------------AA~~I~~~l~~~~~~v  121 (285)
T PF01972_consen   70 RYIDIDDSEFVLRAIREAPKDKPI-DLIIHTPG-------GLVD--------------------AAEQIARALREHPAKV  121 (285)
T ss_pred             eeEcHhhHHHHHHHHHhcCCCCce-EEEEECCC-------CcHH--------------------HHHHHHHHHHhCCCCE
Confidence            678889999999999999887766 44455444       3332                    2235566788999999


Q ss_pred             EEEECCccccccceecccccEEEEeCCeeeeCccccccccCC
Q 015541          169 ISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPD  210 (405)
Q Consensus       169 Ia~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~  210 (405)
                      ++.|+..|+.||.-+|++||-+++++.+.+|--+.++|-+|.
T Consensus       122 ~v~VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA  163 (285)
T PF01972_consen  122 TVIVPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPA  163 (285)
T ss_pred             EEEECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCCh
Confidence            999999999999999999999999999999999999988774

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=97.28  E-value=0.0035  Score=57.77  Aligned_cols=139  Identities=14%  Similarity=0.031  Sum_probs=86.8

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEE--EEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCc
Q 015541           90 AMNLDMDIKYKSFLDEWESDPRVKCV--LIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP  167 (405)
Q Consensus        90 al~~~m~~~L~~~l~~~~~d~~v~~v--vl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP  167 (405)
                      .++.++..++...|..++.++..+-|  .|-+.|       ||+..                    ...++..|..++-|
T Consensus        33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpG-------G~v~~--------------------g~aIyd~m~~~~~~   85 (196)
T PRK12551         33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPG-------GSVYD--------------------GLGIFDTMQHVKPD   85 (196)
T ss_pred             eecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCC-------cchhh--------------------HHHHHHHHHhcCCC
Confidence            47889999999999988754333333  334544       33321                    12344466778889


Q ss_pred             EEEEECCccccccceecccccE--EEEeCCeeeeCccccccccCCccHHH----H-----------HhcCCChH-HHHHH
Q 015541          168 YISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFSY----I-----------AAKGPGGG-SVGAY  229 (405)
Q Consensus       168 vIa~v~G~a~GgG~~lal~~D~--riate~a~f~~PE~~iGl~P~~G~~~----~-----------L~r~~G~~-~~a~~  229 (405)
                      |.+.+.|.|.+.|.-|++++|.  |++.++++|-+-...-|..-...-..    .           +.+..|.. ..-..
T Consensus        86 V~t~~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~  165 (196)
T PRK12551         86 VHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQE  165 (196)
T ss_pred             EEEEEEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            9999999999999999999884  88888888877555433211010000    0           11112211 01222


Q ss_pred             HHhcCCCCCcHHHHHHcCccceecCCC
Q 015541          230 LGMTGKRISTPSDALFAGLGTDYVPSG  256 (405)
Q Consensus       230 l~ltG~~i~~a~eA~~~GLv~~vv~~~  256 (405)
                      ++-.-.-++ |+||+++||||+++...
T Consensus       166 ~~~rd~~ms-a~EA~eyGliD~I~~~~  191 (196)
T PRK12551        166 DTDRDFFMS-PSEAVEYGLIDLVIDKR  191 (196)
T ss_pred             HhhcCcCCC-HHHHHHcCCCcEEeccC
Confidence            222334577 99999999999999764

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.25  E-value=0.0034  Score=57.99  Aligned_cols=139  Identities=13%  Similarity=0.084  Sum_probs=88.9

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCce--EEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCC
Q 015541           89 NAMNLDMDIKYKSFLDEWESDPRVK--CVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKK  166 (405)
Q Consensus        89 Nal~~~m~~~L~~~l~~~~~d~~v~--~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~k  166 (405)
                      -.++.++-+.+...|..++.++.-+  .|.|.+.|       ||+..                    ...+...|...+-
T Consensus        34 ~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpG-------G~v~~--------------------GlaIyd~m~~~~~   86 (201)
T PRK14513         34 TPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPG-------GEVYA--------------------GLAIYDTMRYIKA   86 (201)
T ss_pred             CEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCC-------Cchhh--------------------HHHHHHHHHhcCC
Confidence            4578888888988887777643222  33345554       34321                    1234446778888


Q ss_pred             cEEEEECCccccccceecccccE--EEEeCCeeeeCccccccccCCccHHHH-----------------HhcCCChH-HH
Q 015541          167 PYISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFSYI-----------------AAKGPGGG-SV  226 (405)
Q Consensus       167 PvIa~v~G~a~GgG~~lal~~D~--riate~a~f~~PE~~iGl~P~~G~~~~-----------------L~r~~G~~-~~  226 (405)
                      ||.+.+.|.|.+.|.-|++++|-  |++.+++++-+-...-|+.  +-++..                 +.+..|.. ..
T Consensus        87 ~V~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~  164 (201)
T PRK14513         87 PVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEK  164 (201)
T ss_pred             CEEEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHH
Confidence            99999999999999999999985  9999999988766554431  111111                 11112211 01


Q ss_pred             HHHHHhcCCCCCcHHHHHHcCccceecCCCC
Q 015541          227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGN  257 (405)
Q Consensus       227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~  257 (405)
                      -..++--..-++ |+||+++||||+|+.+..
T Consensus       165 I~~~~~rd~~ms-a~EA~eyGliD~I~~~~~  194 (201)
T PRK14513        165 LLRDMERDYFMS-PEEAKAYGLIDSVIEPTR  194 (201)
T ss_pred             HHHHhccCcccC-HHHHHHcCCCcEEeccCC
Confidence            122222233477 999999999999997643

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=97.22  E-value=0.0018  Score=69.32  Aligned_cols=85  Identities=11%  Similarity=0.046  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEEC
Q 015541           94 DMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMD  173 (405)
Q Consensus        94 ~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~  173 (405)
                      ..+.++.++|+.+..|+.|++|||.-.+.    .|+++..+                 ...++.+..+....|||||..+
T Consensus        76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~~----~g~~~~~~-----------------~ei~~ai~~fk~sgKpVvA~~~  134 (584)
T TIGR00705        76 ISLFDIVNAIRQAADDRRIEGLVFDLSNF----SGWDSPHL-----------------VEIGSALSEFKDSGKPVYAYGT  134 (584)
T ss_pred             cCHHHHHHHHHHHhcCCCceEEEEEccCC----CCCCHHHH-----------------HHHHHHHHHHHhcCCeEEEEEc
Confidence            35678999999999999999999987531    23433221                 2233444456667899999999


Q ss_pred             CccccccceecccccEEEEeCCeeeeC
Q 015541          174 GVTMGFGIGISGHGRYRIVTEKTLLAM  200 (405)
Q Consensus       174 G~a~GgG~~lal~~D~riate~a~f~~  200 (405)
                      +++ -||.-|+.+||.+++.+.+.+++
T Consensus       135 ~~~-s~~YylAs~AD~I~~~p~G~v~~  160 (584)
T TIGR00705       135 NYS-QGQYYLASFADEIILNPMGSVDL  160 (584)
T ss_pred             ccc-chhhhhhhhCCEEEECCCceEEe
Confidence            876 57788999999999999877654

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit

Probab=97.17  E-value=0.012  Score=57.29  Aligned_cols=155  Identities=18%  Similarity=0.169  Sum_probs=97.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (405)
Q Consensus        77 v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (405)
                      |+++..|-.-..-+++....+.+.++++.+.+. .+-+|.|.-.| ++     -+.   +     ... ... -......
T Consensus       122 V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSg-Ga-----Rmq---E-----g~~-sL~-~~ak~~~  184 (285)
T TIGR00515       122 IVVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASG-GA-----RMQ---E-----ALL-SLM-QMAKTSA  184 (285)
T ss_pred             EEEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC-Cc-----ccc---c-----chh-HHH-hHHHHHH
Confidence            555555544456789999999999999988765 56777776654 22     111   1     000 011 1122233


Q ss_pred             HHHHHHhCCCcEEEEECCccccccce-ecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCC
Q 015541          157 LICKISEYKKPYISLMDGVTMGFGIG-ISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK  235 (405)
Q Consensus       157 l~~~i~~~~kPvIa~v~G~a~GgG~~-lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~  235 (405)
                      .+..+.....|+|+++-|+|.||+.. .++.+|++||.+++.+++--..           .+...+|.     +  +. +
T Consensus       185 ~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------Vie~ti~e-----~--lp-e  245 (285)
T TIGR00515       185 ALAKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR-----------VIEQTVRE-----K--LP-E  245 (285)
T ss_pred             HHHHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH-----------HHHHHhcC-----c--cc-h
Confidence            44456677899999999999999655 4569999999999877762221           11122221     1  11 2


Q ss_pred             CCCcHHHHHHcCccceecCCCChHHHHHHHHH
Q 015541          236 RISTPSDALFAGLGTDYVPSGNLGSLKEALLA  267 (405)
Q Consensus       236 ~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~  267 (405)
                      .+.+++-+.+.|+||.+|++.++.....++..
T Consensus       246 ~~q~ae~~~~~G~vD~iv~~~~~r~~l~~~L~  277 (285)
T TIGR00515       246 GFQTSEFLLEHGAIDMIVHRPEMKKTLASLLA  277 (285)
T ss_pred             hcCCHHHHHhCCCCcEEECcHHHHHHHHHHHH
Confidence            24336668889999999999887665555544

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=97.13  E-value=0.022  Score=54.02  Aligned_cols=163  Identities=12%  Similarity=0.045  Sum_probs=94.5

Q ss_pred             CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHH-hcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHH
Q 015541           75 NGVAVITLDRPKALNAMNLDMDIKYKSFLDEW-ESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTA  153 (405)
Q Consensus        75 ~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~-~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~  153 (405)
                      |.-..|.=|+|..  .++.+-...+...+... +.+.++-+|.|.=.  ..|-.|..-.+..              ....
T Consensus        31 G~~V~vIa~~~~~--~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDt--pG~~~g~~aE~~G--------------~~~a   92 (238)
T TIGR03134        31 GGKVTVIGVVPDA--EVGLDEALALAQAVLDVIEADDKRPIVVLVDT--PSQAYGRREELLG--------------INQA   92 (238)
T ss_pred             CEEEEEEEECCCC--cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeC--CCCCCCHHHHHHH--------------HHHH
Confidence            4433344455553  78877777788888875 55566666666544  2354444322211              1222


Q ss_pred             HHHHHHHHH---hCCCcEEEEECCccccccce-ecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHH
Q 015541          154 EYSLICKIS---EYKKPYISLMDGVTMGFGIG-ISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAY  229 (405)
Q Consensus       154 ~~~l~~~i~---~~~kPvIa~v~G~a~GgG~~-lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~  229 (405)
                      .-++.+.+.   ..+.|+|+.|-|.+.|||+. +.+.+|.++|.       |...++..+.-|++-.+-|-..   ...+
T Consensus        93 ~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Al-------p~A~i~vm~~e~aa~I~~~~~~---~~~e  162 (238)
T TIGR03134        93 LAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIAL-------PGAMVHVMDLESMARVTKRSVE---ELEA  162 (238)
T ss_pred             HHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEc-------CCcEEEecCHHHHHHHHccCHh---HHHH
Confidence            233444444   55699999999999988753 33346666665       5555566666666655544332   2333


Q ss_pred             HHhcC--CCCCcHHHHHHcCccceecCCCChHHHHHHHH
Q 015541          230 LGMTG--KRISTPSDALFAGLGTDYVPSGNLGSLKEALL  266 (405)
Q Consensus       230 l~ltG--~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~  266 (405)
                      +.=+-  ...+ ...+.+.|+||+++++.+-+..+..+.
T Consensus       163 ~a~~~~~~a~~-~~~~~~~G~vd~vi~~~~~~~~~~~~~  200 (238)
T TIGR03134       163 LAKSSPVFAPG-IENFVKLGGVHALLDVADADAPAAQLA  200 (238)
T ss_pred             HHHhhhhhccC-HHHHHhCCCccEEeCCCCcccHHHHHH
Confidence            32211  1244 678999999999999766433334443

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>PRK05654 acetyl-CoA carboxylase subunit beta; Validated

Probab=97.08  E-value=0.012  Score=57.62  Aligned_cols=158  Identities=17%  Similarity=0.119  Sum_probs=98.2

Q ss_pred             eCcEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHH
Q 015541           74 PNGVAVITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFT  152 (405)
Q Consensus        74 ~~~v~~ItLnrp~-~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~  152 (405)
                      +|.-..|.-|.|. ..-+++....+.+.++++.+... .+-+|.|.-.| ++     -+.+        .... .. ...
T Consensus       119 ~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsg-Ga-----rmqE--------gi~s-L~-~~a  181 (292)
T PRK05654        119 EGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASG-GA-----RMQE--------GLLS-LM-QMA  181 (292)
T ss_pred             CCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC-Cc-----chhh--------hhhH-HH-hHH
Confidence            3433334445554 56889999999999999988776 46777777554 22     2221        0000 01 112


Q ss_pred             HHHHHHHHHHhCCCcEEEEECCccccccce-ecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHH
Q 015541          153 AEYSLICKISEYKKPYISLMDGVTMGFGIG-ISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLG  231 (405)
Q Consensus       153 ~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~-lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~  231 (405)
                      .....+..+.....|+|+++.|.|.||+.. .++.+|++||.+++.+++--.           -.+...+|     .++ 
T Consensus       182 k~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGp-----------rvie~~~~-----e~l-  244 (292)
T PRK05654        182 KTSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGP-----------RVIEQTVR-----EKL-  244 (292)
T ss_pred             HHHHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCH-----------HHHHhhhh-----hhh-
Confidence            223344456677899999999999999655 466799999988887766221           11111111     111 


Q ss_pred             hcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHH
Q 015541          232 MTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLA  267 (405)
Q Consensus       232 ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~  267 (405)
                       . +.+.+++-+.+.|+||.+|++.++.....++..
T Consensus       245 -p-e~~~~ae~~~~~G~vD~Vv~~~e~r~~l~~~L~  278 (292)
T PRK05654        245 -P-EGFQRAEFLLEHGAIDMIVHRRELRDTLASLLA  278 (292)
T ss_pred             -h-hhhcCHHHHHhCCCCcEEECHHHHHHHHHHHHH
Confidence             1 123337778899999999999877665555544

>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification

Probab=97.04  E-value=0.00035  Score=61.79  Aligned_cols=96  Identities=13%  Similarity=0.078  Sum_probs=59.1

Q ss_pred             HHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCcccc------------ccc---------cCCcc-----HH
Q 015541          161 ISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG------------IGL---------FPDVG-----FS  214 (405)
Q Consensus       161 i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~------------iGl---------~P~~G-----~~  214 (405)
                      ..+..|||||.++|.+..||.-|+.+||-+++.+.+.++..-+.            +|+         +.+.+     .+
T Consensus         2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s   81 (154)
T PF01343_consen    2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS   81 (154)
T ss_dssp             HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred             ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence            35678999999999999999999999999999998876654332            232         22222     00


Q ss_pred             ----HHHh-----------------cCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChH
Q 015541          215 ----YIAA-----------------KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLG  259 (405)
Q Consensus       215 ----~~L~-----------------r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~  259 (405)
                          ..+.                 |-+..  -...-++.|..++ |++|++.||||++-..+++.
T Consensus        82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~--~~v~~~~~~~~~~-~~~A~~~GLiD~i~~~~~~~  144 (154)
T PF01343_consen   82 EEERENLQELLDELYDQFVNDVAEGRGLSP--DDVEEIADGGVFT-AQQALELGLIDEIGTFDEAI  144 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTS-H--HHHHCHHCCHEEE-HHHHHHTTSSSEETSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCCH--HHHHHHHhhcccc-HHHHHHcCchhhcCCHHHHH
Confidence                0110                 11111  1222357899999 99999999999997544443

; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.

>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed

Probab=96.75  E-value=0.032  Score=54.37  Aligned_cols=155  Identities=15%  Similarity=0.110  Sum_probs=92.5

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (405)
Q Consensus        77 v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (405)
                      |.++..+--=..-++....-+.+.++++.+.+. .+-+|+|..+|+      +-+.+-.        .. ...+ .....
T Consensus       135 v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~-rlPlV~l~~SGG------ARmQEg~--------~s-L~qm-ak~sa  197 (296)
T CHL00174        135 VALGVMDFQFMGGSMGSVVGEKITRLIEYATNE-SLPLIIVCASGG------ARMQEGS--------LS-LMQM-AKISS  197 (296)
T ss_pred             EEEEEECCcccccCcCHHHHHHHHHHHHHHHHc-CCCEEEEECCCC------ccccccc--------hh-hhhh-HHHHH
Confidence            555555544456788888889999998888775 366777766552      2222110        00 0011 11111


Q ss_pred             HHHH-HHhCCCcEEEEECCcccccccee-cccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcC
Q 015541          157 LICK-ISEYKKPYISLMDGVTMGFGIGI-SGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTG  234 (405)
Q Consensus       157 l~~~-i~~~~kPvIa~v~G~a~GgG~~l-al~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG  234 (405)
                      .+.. ...-..|+|+++.|+|.||+... ++.||++|+.+++.+++--.           -.....+|..       +. 
T Consensus       198 a~~~~~~~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGP-----------rVIe~t~ge~-------lp-  258 (296)
T CHL00174        198 ALYDYQSNKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGK-----------RVIEQTLNKT-------VP-  258 (296)
T ss_pred             HHHHHHHcCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCH-----------HHHHHhcCCc-------CC-
Confidence            1122 22457999999999999998776 55699999987876665211           1111111211       11 


Q ss_pred             CCCCcHHHHHHcCccceecCCCChHHHHHHHHH
Q 015541          235 KRISTPSDALFAGLGTDYVPSGNLGSLKEALLA  267 (405)
Q Consensus       235 ~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~  267 (405)
                      +-+.+|+-.++.|+||.+|+..++.+...+|..
T Consensus       259 e~fq~ae~l~~~G~vD~iV~r~~lr~~l~~ll~  291 (296)
T CHL00174        259 EGSQAAEYLFDKGLFDLIVPRNLLKGVLSELFQ  291 (296)
T ss_pred             cccccHHHHHhCcCceEEEcHHHHHHHHHHHHH
Confidence            223337778899999999998777665555543

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=96.55  E-value=0.06  Score=56.79  Aligned_cols=159  Identities=13%  Similarity=0.133  Sum_probs=97.8

Q ss_pred             EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHH
Q 015541           80 ITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLI  158 (405)
Q Consensus        80 ItLnrp~-~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~  158 (405)
                      |.=|+|. ..-+++..-.+.+.++++.+.+. ++-+|.|.-.+  .|..|.+-.              ....++..-+++
T Consensus       319 vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~--G~~~g~~~E--------------~~g~~~~~a~~~  381 (512)
T TIGR01117       319 IIANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVP--GFLPGVNQE--------------YGGIIRHGAKVL  381 (512)
T ss_pred             EEEeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCc--CccccHHHH--------------HHHHHHHHHHHH
Confidence            4445554 34569999999999999988774 56677776553  265554321              112344555677


Q ss_pred             HHHHhCCCcEEEEECCccccccceeccc-----ccEEEEeCCeeeeCccccccccCCccHHHHHhc-CC----ChH-HHH
Q 015541          159 CKISEYKKPYISLMDGVTMGFGIGISGH-----GRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAK-GP----GGG-SVG  227 (405)
Q Consensus       159 ~~i~~~~kPvIa~v~G~a~GgG~~lal~-----~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r-~~----G~~-~~a  227 (405)
                      ..+.....|+|+.|-|.+.|||. ++++     +|+++|.+++.++.       .+.-|+...+-+ -+    -.. ...
T Consensus       382 ~a~~~~~vP~isvi~g~~~Gga~-~am~~~~~~~d~~~a~p~a~~~v-------~~pe~a~~i~~~~~l~~~~~~~~~~~  453 (512)
T TIGR01117       382 YAYSEATVPKVTIITRKAYGGAY-LAMCSKHLGADQVYAWPTAEIAV-------MGPAGAANIIFRKDIKEAKDPAATRK  453 (512)
T ss_pred             HHHHhCCCCEEEEEcCCCchHHH-HHhccccCCCCEEEEcCCCeEee-------cCHHHHHHHHhhhhcccccCHHHHHH
Confidence            78889999999999999988754 4443     78877777766554       433333333322 11    000 011


Q ss_pred             HHHH-hcCCCCCcHHHHHHcCccceecCCCChHHHHHH
Q 015541          228 AYLG-MTGKRISTPSDALFAGLGTDYVPSGNLGSLKEA  264 (405)
Q Consensus       228 ~~l~-ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~  264 (405)
                      ..+. ..-+..+ +..+...|+||.||++.+......+
T Consensus       454 ~~~~~~~~~~~~-~~~~a~~g~vD~VI~P~~tR~~l~~  490 (512)
T TIGR01117       454 QKIAEYREEFAN-PYKAAARGYVDDVIEPKQTRPKIVN  490 (512)
T ss_pred             HHHHHHHHhhcC-HHHHHhcCCCCeeEChHHHHHHHHH
Confidence            1111 1122345 8899999999999998776543333

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=0.037  Score=56.39  Aligned_cols=149  Identities=15%  Similarity=0.104  Sum_probs=103.7

Q ss_pred             eCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHH
Q 015541           74 PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTA  153 (405)
Q Consensus        74 ~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~  153 (405)
                      ++.|.+|.++     +++++.+.+.+.+.++.++++. ..+|||.=.-|+.                         +...
T Consensus        25 ~~~v~vi~i~-----g~I~~~s~~~l~r~l~~A~~~~-a~~vvl~ldTPGG-------------------------l~~s   73 (436)
T COG1030          25 EKKVYVIEID-----GAIDPASADYLQRALQSAEEEN-AAAVVLELDTPGG-------------------------LLDS   73 (436)
T ss_pred             CCeEEEEEec-----CccCHHHHHHHHHHHHHHHhCC-CcEEEEEecCCCc-------------------------hHHH
Confidence            3457777776     7889999999999999999875 2344443221210                         1233


Q ss_pred             HHHHHHHHHhCCCcEEEEE---CCccccccceecccccEEEEeCCeeeeCcccc-cc-c-cCCcc-HHHH------HhcC
Q 015541          154 EYSLICKISEYKKPYISLM---DGVTMGFGIGISGHGRYRIVTEKTLLAMPENG-IG-L-FPDVG-FSYI------AAKG  220 (405)
Q Consensus       154 ~~~l~~~i~~~~kPvIa~v---~G~a~GgG~~lal~~D~riate~a~f~~PE~~-iG-l-~P~~G-~~~~------L~r~  220 (405)
                      ..++...|.+.+.||+..+   .+.|..+|.-++++||+..+.+.+.++--..- .| - .+... ..+.      +++.
T Consensus        74 m~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~  153 (436)
T COG1030          74 MRQIVRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEE  153 (436)
T ss_pred             HHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHH
Confidence            4577889999999998888   34699999999999999999998888764432 22 1 11111 1222      2233


Q ss_pred             CChH-HHHHHHHhcCCCCCcHHHHHHcCccceecC
Q 015541          221 PGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVP  254 (405)
Q Consensus       221 ~G~~-~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~  254 (405)
                      -|+. ..+..++-....++ ++||++.|++|-+..
T Consensus       154 ~gRN~~~ae~~v~~~~~l~-a~eA~~~~vid~iA~  187 (436)
T COG1030         154 RGRNPTWAERFVTENLSLT-AEEALRQGVIDLIAR  187 (436)
T ss_pred             cCCChHHHHHHhhhccCCC-hhHHHhcCccccccC
Confidence            3332 26777888889999 999999999997754

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=96.43  E-value=0.021  Score=52.49  Aligned_cols=98  Identities=14%  Similarity=0.076  Sum_probs=59.5

Q ss_pred             HHHHHHhCCCcEEEEECCccccccceecccccEE--EEeCCeeeeCccccccccCCccHHH----------------HHh
Q 015541          157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYR--IVTEKTLLAMPENGIGLFPDVGFSY----------------IAA  218 (405)
Q Consensus       157 l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~r--iate~a~f~~PE~~iGl~P~~G~~~----------------~L~  218 (405)
                      ++..|...++||...+.|.|..-|.-|+++++..  ++.+++++-+--.. |.+-+...=.                .++
T Consensus        77 Iydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~a~Di~i~A~ei~~~~~~l~~i~a  155 (200)
T COG0740          77 IYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQASDIEIHAREILKIKERLNRIYA  155 (200)
T ss_pred             HHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3446778899999999999999999999988764  66666655443322 2222111100                011


Q ss_pred             cCCChHHHHH--HHHhcCCCCCcHHHHHHcCccceecCCCC
Q 015541          219 KGPGGGSVGA--YLGMTGKRISTPSDALFAGLGTDYVPSGN  257 (405)
Q Consensus       219 r~~G~~~~a~--~l~ltG~~i~~a~eA~~~GLv~~vv~~~~  257 (405)
                      ..-|.. ...  ...=-..-++ |+||+++||||+|+...+
T Consensus       156 ~~TGq~-~e~i~~d~drd~~ms-a~eA~~yGLiD~V~~~~~  194 (200)
T COG0740         156 EHTGQT-LEKIEKDTDRDTWMS-AEEAKEYGLIDKVIESRE  194 (200)
T ss_pred             HHcCCC-HHHHHHhhcccccCC-HHHHHHcCCcceeccccc
Confidence            111221 111  1111234578 999999999999997654

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=96.30  E-value=0.045  Score=51.32  Aligned_cols=140  Identities=17%  Similarity=0.156  Sum_probs=86.3

Q ss_pred             CCCHHHHHHHHHHHHHHhcCC---CceEEEEeeCCCCCcccC---CChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHh
Q 015541           90 AMNLDMDIKYKSFLDEWESDP---RVKCVLIEGSGPRAFCAG---MDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISE  163 (405)
Q Consensus        90 al~~~m~~~L~~~l~~~~~d~---~v~~vvl~g~g~~~FcaG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~  163 (405)
                      .++.++.+.+...|-.++.++   ++ -+-|-|.|+ ..-+|   |++.                    ....+...|..
T Consensus        48 ~~~~~~a~~iiaqLl~L~~~~~~k~I-~lyINSpGG-sv~~G~~iG~v~--------------------~glaIyD~m~~  105 (222)
T PRK12552         48 QVGMDVTELIIAQLLYLEFDDPEKPI-YFYINSTGT-SWYTGDAIGFET--------------------EAFAICDTMRY  105 (222)
T ss_pred             chhHhHHHHHHHHHHHHhccCCCCCE-EEEEeCCCC-Cccccccccccc--------------------cHHHHHHHHHh
Confidence            445558888888877776543   34 344566663 44444   2221                    11234445667


Q ss_pred             CCCcEEEEECCccccccceecccccE--EEEeCCeeeeCccccccccCCccHHHH------HhcCCChHHHHHHHHhcCC
Q 015541          164 YKKPYISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFSYI------AAKGPGGGSVGAYLGMTGK  235 (405)
Q Consensus       164 ~~kPvIa~v~G~a~GgG~~lal~~D~--riate~a~f~~PE~~iGl~P~~G~~~~------L~r~~G~~~~a~~l~ltG~  235 (405)
                      .+-||.+.+.|.|.+.+.-|++++|-  |.+.++++|-+-....|..  +-++-+      |-+.-- .-...|.--||+
T Consensus       106 ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~--G~A~di~~~a~el~~~r~-~l~~iya~~TG~  182 (222)
T PRK12552        106 IKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR--GQATDIQIRAKEVLHNKR-TMLEILSRNTGQ  182 (222)
T ss_pred             cCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc--cCHHHHHHHHHHHHHHHH-HHHHHHHHHHCC
Confidence            78899999999999999999999985  8898999887766544431  111111      111100 001122223443


Q ss_pred             -------------CCCcHHHHHHcCccceecCC
Q 015541          236 -------------RISTPSDALFAGLGTDYVPS  255 (405)
Q Consensus       236 -------------~i~~a~eA~~~GLv~~vv~~  255 (405)
                                   -++ |+||+++||||+|+.+
T Consensus       183 ~~e~I~~d~~rd~wms-A~EA~eyGliD~Ii~~  214 (222)
T PRK12552        183 TVEKLSKDTDRMFYLT-PQEAKEYGLIDRVLES  214 (222)
T ss_pred             CHHHHHHHhcCCCcCC-HHHHHHcCCCcEEecc
Confidence                         478 9999999999999965

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=96.00  E-value=0.091  Score=55.46  Aligned_cols=143  Identities=15%  Similarity=0.061  Sum_probs=81.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (405)
Q Consensus        77 v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (405)
                      |.++-.+--=..-++...-.+.+.++++.+.++. +-+|.|.-+| ++     .+.+-..      ......+.|    .
T Consensus        84 v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSg-Ga-----rm~eg~~------~l~~~~~~~----~  146 (512)
T TIGR01117        84 VYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSG-GA-----RIQEAVD------ALKGYGDIF----Y  146 (512)
T ss_pred             EEEEEECCcccccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCC-CC-----Cccccch------hhhhHHHHH----H
Confidence            4444444333567888888888999888887764 4556655443 22     2211000      000011111    1


Q ss_pred             HHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCe-eeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCC
Q 015541          157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT-LLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK  235 (405)
Q Consensus       157 l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a-~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~  235 (405)
                      .... ..-..|+|+++.|.|.||+......|||+|+++++ .+.+           ++...+....|..       ++.+
T Consensus       147 ~~~~-~s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~-----------aGP~vv~~~~Ge~-------v~~e  207 (512)
T TIGR01117       147 RNTI-ASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFI-----------TGPQVIKTVTGEE-------VTAE  207 (512)
T ss_pred             HHHH-HcCCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEe-----------cChHHHHhhcCcc-------cchh
Confidence            1111 23358999999999999998888899999999864 3443           1111222222211       2344


Q ss_pred             CCCcHHHHH--HcCccceecCCC
Q 015541          236 RISTPSDAL--FAGLGTDYVPSG  256 (405)
Q Consensus       236 ~i~~a~eA~--~~GLv~~vv~~~  256 (405)
                      .+. +.+..  ..|++|.+++++
T Consensus       208 ~lG-Ga~~h~~~sGv~d~~~~de  229 (512)
T TIGR01117       208 QLG-GAMAHNSVSGVAHFIAEDD  229 (512)
T ss_pred             hcc-hHHHhccccceeEEecCCh
Confidence            454 44444  589999998764

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=95.72  E-value=0.16  Score=54.12  Aligned_cols=110  Identities=13%  Similarity=0.051  Sum_probs=69.5

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (405)
Q Consensus        77 v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (405)
                      |.++--+.-=+.-+++....+.+.++++.+.+.. +-+|.|.-.| +++-.+ ....+          .... .+...+.
T Consensus       131 V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~~-lPlV~l~DSg-Garl~~-q~e~~----------~~~~-~~g~if~  196 (569)
T PLN02820        131 CMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCR-LPCIYLVDSG-GANLPR-QAEVF----------PDRD-HFGRIFY  196 (569)
T ss_pred             EEEEEECCCccCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCC-CcCCcc-ccccc----------chHh-HHHHHHH
Confidence            4444444333568899999999999999887764 5666665443 233211 00000          0000 1122222


Q ss_pred             HHHHHHhCCCcEEEEECCccccccceecccccEEEEeCC-eeeeC
Q 015541          157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAM  200 (405)
Q Consensus       157 l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~-a~f~~  200 (405)
                      ....+.....|+|++|-|.|.|||..+...||++|+++. +.+.+
T Consensus       197 ~~~~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~  241 (569)
T PLN02820        197 NQARMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFL  241 (569)
T ss_pred             HHHHHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEe
Confidence            333456677999999999999999999999999999874 44443

>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]

Probab=95.34  E-value=0.056  Score=52.10  Aligned_cols=88  Identities=17%  Similarity=0.161  Sum_probs=64.1

Q ss_pred             HHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCC
Q 015541          156 SLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK  235 (405)
Q Consensus       156 ~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~  235 (405)
                      +-...+.+++.|+||.|=|---+||.--...+|.+.+-|+++|+.      +.|.++++.++-..    +++.+. -...
T Consensus       179 ~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWkD~----~ka~eA-Ae~m  247 (317)
T COG0825         179 RNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWKDA----SKAKEA-AEAM  247 (317)
T ss_pred             HHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcCh----hhhHHH-HHHc
Confidence            444568899999999998886555543233579999999999986      56767666655322    234443 3446


Q ss_pred             CCCcHHHHHHcCccceecCC
Q 015541          236 RISTPSDALFAGLGTDYVPS  255 (405)
Q Consensus       236 ~i~~a~eA~~~GLv~~vv~~  255 (405)
                      .|+ |.+.+++|+||.|+|.
T Consensus       248 kit-a~dLk~lgiID~II~E  266 (317)
T COG0825         248 KIT-AHDLKELGIIDGIIPE  266 (317)
T ss_pred             CCC-HHHHHhCCCcceeccC
Confidence            788 9999999999999985

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=95.29  E-value=0.13  Score=54.13  Aligned_cols=140  Identities=19%  Similarity=0.179  Sum_probs=91.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (405)
Q Consensus        77 v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (405)
                      |.++-.+.--...++.....+.+.++++.+.++. +-+|.|.-.|+ +|  + ++.+-....         . -+...+.
T Consensus        59 v~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~~-~P~v~l~dsgG-a~--~-r~~eg~~~l---------~-~~g~i~~  123 (493)
T PF01039_consen   59 VVVIAQDFTVLGGSVGEVHGEKIARAIELALENG-LPLVYLVDSGG-AF--L-RMQEGVESL---------M-GMGRIFR  123 (493)
T ss_dssp             EEEEEEETTSGGGTBSHHHHHHHHHHHHHHHHHT-EEEEEEEEESS-BC--G-GGGGHHHHH---------H-HHHHHHH
T ss_pred             EEEEEeccceecCCCCcccceeeehHHHHHHHcC-CCcEEeccccc-cc--c-ccchhhhhh---------h-hhHHHHH
Confidence            4444555445678899999999999999888764 55666644331 21  1 444433211         1 1222333


Q ss_pred             HHHHHHhCCCcEEEEECCccccccceecccccEEEEeCC-eeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCC
Q 015541          157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK  235 (405)
Q Consensus       157 l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~-a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~  235 (405)
                      -...+.. ..|+|+++.|.|.|||..++..||++|++++ +.+.+-                    |+.  ..+ ..||+
T Consensus       124 ~~~~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~--------------------GP~--vv~-~~~Ge  179 (493)
T PF01039_consen  124 AIARLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLA--------------------GPR--VVE-SATGE  179 (493)
T ss_dssp             HHHHHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------THH--HHH-HHHSS
T ss_pred             HHHHHhc-CCCeEEEEccccccchhhcccccCccccCccceEEEec--------------------ccc--ccc-cccCc
Confidence            3445566 9999999999999999999999999999987 766541                    211  111 24467


Q ss_pred             CCCcHHH-------HHHcCccceecCCC
Q 015541          236 RISTPSD-------ALFAGLGTDYVPSG  256 (405)
Q Consensus       236 ~i~~a~e-------A~~~GLv~~vv~~~  256 (405)
                      .++ .++       +...|.+|.+++++
T Consensus       180 ~~~-~~~lgG~~~h~~~sG~~d~v~~de  206 (493)
T PF01039_consen  180 EVD-SEELGGADVHAAKSGVVDYVVDDE  206 (493)
T ss_dssp             CTS-HHHHHBHHHHHHTSSSSSEEESSH
T ss_pred             ccc-chhhhhhhhhcccCCCceEEEech
Confidence            777 554       24689999999875

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>PRK10949 protease 4; Provisional

Probab=95.05  E-value=0.12  Score=55.81  Aligned_cols=85  Identities=7%  Similarity=0.072  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEEC
Q 015541           94 DMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMD  173 (405)
Q Consensus        94 ~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~  173 (405)
                      -.+.++.++|+.+.+|+.|++|||.-.++.    |+.+..                 ....++.+..+....|||||..+
T Consensus        95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~g----G~~~a~-----------------~~eI~~ai~~fk~sGKpVvA~~~  153 (618)
T PRK10949         95 NSLFDIVNTIRQAKDDRNITGIVLDLKNFA----GADQPS-----------------MQYIGKALREFRDSGKPVYAVGD  153 (618)
T ss_pred             ccHHHHHHHHHHHhcCCCceEEEEEeCCCC----CccHHH-----------------HHHHHHHHHHHHHhCCeEEEEec
Confidence            345689999999999999999999976421    222211                 11223444456667899999766


Q ss_pred             CccccccceecccccEEEEeCCeeeeC
Q 015541          174 GVTMGFGIGISGHGRYRIVTEKTLLAM  200 (405)
Q Consensus       174 G~a~GgG~~lal~~D~riate~a~f~~  200 (405)
                      .++ -+|.-||.+||-+++.+.+.+++
T Consensus       154 ~~~-s~~YyLASaAD~I~l~P~G~v~~  179 (618)
T PRK10949        154 SYS-QGQYYLASFANKIYLSPQGVVDL  179 (618)
T ss_pred             Ccc-chhhhhhhhCCEEEECCCceEEE
Confidence            665 46788999999999999877654

>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]

Probab=95.04  E-value=0.39  Score=46.07  Aligned_cols=154  Identities=18%  Similarity=0.123  Sum_probs=94.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (405)
Q Consensus        77 v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (405)
                      |+...++--=-.-+|..-.=+.|.++++.+-.+ .+.+|+++.+|+      +-..|-.-          ..-.......
T Consensus       124 vv~av~df~FmgGSmGsVvGeki~ra~E~A~e~-k~P~v~f~aSGG------ARMQEg~l----------SLMQMaktsa  186 (294)
T COG0777         124 VVLAVMDFAFMGGSMGSVVGEKITRAIERAIED-KLPLVLFSASGG------ARMQEGIL----------SLMQMAKTSA  186 (294)
T ss_pred             EEEEEEeccccccchhHHHHHHHHHHHHHHHHh-CCCEEEEecCcc------hhHhHHHH----------HHHHHHHHHH
Confidence            555555543334566666677888888887775 478999988873      22221100          0001223334


Q ss_pred             HHHHHHhCCCcEEEEECCcccccc-ceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCC
Q 015541          157 LICKISEYKKPYISLMDGVTMGFG-IGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK  235 (405)
Q Consensus       157 l~~~i~~~~kPvIa~v~G~a~GgG-~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~  235 (405)
                      .+.++..-..|+|+.+..+++||- ..+++..|+.||-+.|.+++.--               |.+-.  ...+=+-.| 
T Consensus       187 Al~~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGp---------------RVIEQ--Tire~LPeg-  248 (294)
T COG0777         187 ALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGP---------------RVIEQ--TIREKLPEG-  248 (294)
T ss_pred             HHHHHHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcc---------------hhhhh--hhcccCCcc-
Confidence            566778889999999999999883 55778899999876766555321               22210  111111111 


Q ss_pred             CCCcHHHHHHcCccceecCCCChHHHHHHHH
Q 015541          236 RISTPSDALFAGLGTDYVPSGNLGSLKEALL  266 (405)
Q Consensus       236 ~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~  266 (405)
                       +..++-.++.|+||.||+..++......+.
T Consensus       249 -fQ~aEfLlehG~iD~iv~R~elr~tla~ll  278 (294)
T COG0777         249 -FQTAEFLLEHGMIDMIVHRDELRTTLASLL  278 (294)
T ss_pred             -hhhHHHHHHcCCceeeecHHHHHHHHHHHH
Confidence             223788899999999998866654444443

>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]

Probab=92.37  E-value=0.62  Score=48.89  Aligned_cols=102  Identities=17%  Similarity=0.060  Sum_probs=67.0

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (405)
Q Consensus        77 v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (405)
                      +.++-=+-+.+.-++..--.+.+.++.+.+.++.--.+.+..|.|       +.+.+=.         ...+ .+...+.
T Consensus        93 ~~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsgG-------ari~~~v---------~~l~-g~g~iF~  155 (526)
T COG4799          93 VFVFANDFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLNDSGG-------ARIQEGV---------PSLA-GYGRIFY  155 (526)
T ss_pred             EEEEEecCceecccccccccchHHHHHHHHHHcCCCEEEEEcccc-------cccccCc---------cccc-cchHHHH
Confidence            333444455577888887888888888887776544444444443       2332111         1111 1223333


Q ss_pred             HHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCe
Q 015541          157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT  196 (405)
Q Consensus       157 l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a  196 (405)
                      .+..+... .|.|++|-|.|.|||+-+...||++|+.+++
T Consensus       156 ~~a~~Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~  194 (526)
T COG4799         156 RNARASGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQ  194 (526)
T ss_pred             HHHHhccC-CCEEEEEEecCcccccccccccceEEEEcCC
Confidence            34455566 9999999999999999999999999999985

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=89.45  E-value=1.1  Score=47.27  Aligned_cols=162  Identities=15%  Similarity=0.160  Sum_probs=92.7

Q ss_pred             CcEEEEEEcCCCCCC-CCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHH
Q 015541           75 NGVAVITLDRPKALN-AMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTA  153 (405)
Q Consensus        75 ~~v~~ItLnrp~~~N-al~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~  153 (405)
                      |.-.-|.=|+|.... +++.+-.+...+.++.++.. ++-+|.|.-.  ..|..|-+-.              .....+.
T Consensus       293 G~pVGiian~~~~~~G~~~~~~a~K~arfi~lcd~~-~iPlv~l~dt--pGf~~g~~~E--------------~~g~~~~  355 (493)
T PF01039_consen  293 GRPVGIIANNPRQRAGALDPDGARKAARFIRLCDAF-NIPLVTLVDT--PGFMPGPEAE--------------RAGIIRA  355 (493)
T ss_dssp             TEEEEEEEE-TTCGGGEB-HHHHHHHHHHHHHHHHT-T--EEEEEEE--CEB--SHHHH--------------HTTHHHH
T ss_pred             CcceEEEEeccccccccCChHHHHHHHHHHHHHHhh-CCceEEEeec--ccccccchhh--------------hcchHHH
Confidence            433334556665333 69999999999999999884 6778887654  3465554321              1123455


Q ss_pred             HHHHHHHHHhCCCcEEEEECCccccccceeccc-c----cEEEEeCCeeeeCccccccccCCccHHHHHhcCC-------
Q 015541          154 EYSLICKISEYKKPYISLMDGVTMGFGIGISGH-G----RYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGP-------  221 (405)
Q Consensus       154 ~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~-~----D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~-------  221 (405)
                      .-+++..+..+..|.|..|-|.+.|||. ++++ .    |+++|.+++++       |..+.-|+...+-+.-       
T Consensus       356 ga~~~~a~~~~~vP~itvi~~~~~Gga~-~am~~~~~~~~~~~Awp~a~~-------~vm~~e~a~~i~~~~~~~~~~~~  427 (493)
T PF01039_consen  356 GARLLYALAEATVPKITVIVRKAYGGAY-YAMCGRGYGPDFVFAWPTAEI-------GVMGPEGAASILYRDELEAAEAE  427 (493)
T ss_dssp             HHHHHHHHHHH-S-EEEEEEEEEEHHHH-HHTTGGGGTTSEEEEETT-EE-------ESS-HHHHHHHHTHHHHHHSCHC
T ss_pred             HHHHHHHHHcCCCCEEEEEeCCccCcch-hhhcccccchhhhhhhhccee-------eecChhhhheeeehhhhhhhhcc
Confidence            6688889999999999999999999876 3333 2    56655555555       4544444444332210       


Q ss_pred             Ch--HH-HHHHHHhcCC-CCCcHHHHHHcCccceecCCCChHHHH
Q 015541          222 GG--GS-VGAYLGMTGK-RISTPSDALFAGLGTDYVPSGNLGSLK  262 (405)
Q Consensus       222 G~--~~-~a~~l~ltG~-~i~~a~eA~~~GLv~~vv~~~~l~~~~  262 (405)
                      |.  .. +...+.-.-+ ..+ +..+...|++|.++++.+.....
T Consensus       428 ~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~D~ii~p~~tR~~l  471 (493)
T PF01039_consen  428 GADPEAQRAEKIAEYEDELSS-PYRAASRGYVDDIIDPAETRKVL  471 (493)
T ss_dssp             CHSHHHHHHHHHHHHHHHHSS-HHHHHHTTSSSEESSGGGHHHHH
T ss_pred             cchhHHHHHHHHHHHHHhcCC-HHHHHhcCCCCCccCHHHHHHHH
Confidence            00  00 0111111111 145 88999999999999987764433

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=89.20  E-value=8.8  Score=41.17  Aligned_cols=145  Identities=12%  Similarity=0.139  Sum_probs=91.8

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcE
Q 015541           89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPY  168 (405)
Q Consensus        89 Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPv  168 (405)
                      -+++.+-.+...+.++.++. -++-+|.|.=.  ..|..|.+-..              ....+...++++.+.....|.
T Consensus       380 g~l~~~~a~Kaarfi~lc~~-~~iPlv~l~D~--pGf~~G~~~E~--------------~G~~~~~a~l~~A~a~~~VP~  442 (569)
T PLN02820        380 GILFTESALKGAHFIELCAQ-RGIPLLFLQNI--TGFMVGSRSEA--------------SGIAKAGAKMVMAVACAKVPK  442 (569)
T ss_pred             CccCHHHHHHHHHHHHHHHh-cCCCEEEEEEC--CCCCCCHHHHH--------------hhHHHHHHHHHHHHHhCCCCE
Confidence            45788888888888888876 46777777654  23776655432              123455678888999999999


Q ss_pred             EEEECCccccccceec----ccccEEEEeCCeeeeCccccccccCCccHHHHHhcC-C------C----hHHH-H--HHH
Q 015541          169 ISLMDGVTMGFGIGIS----GHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG-P------G----GGSV-G--AYL  230 (405)
Q Consensus       169 Ia~v~G~a~GgG~~la----l~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~-~------G----~~~~-a--~~l  230 (405)
                      |++|-|.+.|||.--.    +..|+++|.       |...+|..+.-|+.-.+.+. +      |    .... +  ..+
T Consensus       443 isvi~g~a~G~g~~aM~g~~~~~d~~~aw-------p~A~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~  515 (569)
T PLN02820        443 ITIIVGGSFGAGNYGMCGRAYSPNFLFMW-------PNARIGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKT  515 (569)
T ss_pred             EEEEECCcchHHHHHhcCcCCCCCEEEEC-------CCCeEEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHH
Confidence            9999999999764222    234555555       55556666666666555431 0      0    0000 0  000


Q ss_pred             -HhcCCCCCcHHHHHHcCccceecCCCCh
Q 015541          231 -GMTGKRISTPSDALFAGLGTDYVPSGNL  258 (405)
Q Consensus       231 -~ltG~~i~~a~eA~~~GLv~~vv~~~~l  258 (405)
                       -.--+..+ +..|-..|++|.|+++.+.
T Consensus       516 ~~~~~~~~~-p~~aa~~~~vD~VIdP~dT  543 (569)
T PLN02820        516 VEAYEREAN-PYYSTARLWDDGVIDPADT  543 (569)
T ss_pred             HHHHHHhCC-HHHHHHcCCcCcccCHHHH
Confidence             11122345 7788899999999988654

>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3

Probab=80.43  E-value=3.1  Score=40.99  Aligned_cols=78  Identities=19%  Similarity=0.171  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHhcCC---CceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEEE
Q 015541           94 DMDIKYKSFLDEWESDP---RVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYIS  170 (405)
Q Consensus        94 ~m~~~L~~~l~~~~~d~---~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa  170 (405)
                      ....+|.++|+.+....   .+.+|||. .||++      +.++..              | ..+.+.++|+.++.|||+
T Consensus        55 ~A~~~I~~al~~~~~~~~~~~~Dviii~-RGGGs------~eDL~~--------------F-N~e~varai~~~~~Pvis  112 (319)
T PF02601_consen   55 GAAASIVSALRKANEMGQADDFDVIIII-RGGGS------IEDLWA--------------F-NDEEVARAIAASPIPVIS  112 (319)
T ss_pred             chHHHHHHHHHHHHhccccccccEEEEe-cCCCC------hHHhcc--------------c-ChHHHHHHHHhCCCCEEE
Confidence            34567888888887654   46666663 33222      222211              2 234788899999999999


Q ss_pred             EECCccccccceec-ccccEEEEeCCe
Q 015541          171 LMDGVTMGFGIGIS-GHGRYRIVTEKT  196 (405)
Q Consensus       171 ~v~G~a~GgG~~la-l~~D~riate~a  196 (405)
                      +| ||-.=  ..|+ +.||+|..|+++
T Consensus       113 aI-GHe~D--~ti~D~vAd~ra~TPta  136 (319)
T PF02601_consen  113 AI-GHETD--FTIADFVADLRAPTPTA  136 (319)
T ss_pred             ec-CCCCC--chHHHHHHHhhCCCHHH
Confidence            77 22211  1122 456777776654

1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	405
3bpt_A	363	Crystal Structure Of Human Beta-Hydroxyisobutyryl-C		3e-46
4hdt_A	353	Crystal Structure Of A Carnitinyl-Coa Dehydratase F		4e-37
4j2u_A	365	Crystal Structure Of An Enoyl-coa Hydratase From Rh		2e-35
3ju1_A	407	Crystal Structure Of Enoyl-Coa HydrataseISOMERASE F		1e-25
3qxz_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		2e-13
3r0o_A	273	Crystal Structure Of Carnitinyl-Coa Hydratase From		1e-12
2ej5_A	257	Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydr		1e-11
1mj3_A	260	Crystal Structure Analysis Of Rat Enoyl-Coa Hydrata		1e-11
3qmj_A	256	Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 Fr		1e-11
1dub_A	261	2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph		1e-11
1ey3_A	258	Structure Of Enoyl-Coa Hydratase Complexed With The		1e-11
3qyr_A	253	Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 M		2e-11
2hw5_A	286	The Crystal Structure Of Human Enoyl-Coenzyme A (Co		2e-11
3r9t_A	267	Structure Of Echa1_1 From Mycobacterium Paratubercu		2e-11
3r9s_A	267	Structure Of A Carnitinyl-Coa Dehydratase From Myco		2e-11
3p85_A	270	Crystal Structure Enoyl-Coa Hydratase From Mycobact		7e-11
3hrx_A	254	Crystal Structure Of Phenylacetic Acid Degradation		2e-10
3q0j_A	258	Crystal Structure Of The Mycobacterium Tuberculosis		2e-10
3h81_A	278	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		2e-10
3pzk_A	257	Crystal Structure Of The Mycobacterium Tuberculosis		2e-10
3moy_A	263	Crystal Structure Of Probable Enoyl-Coa Hydratase F		2e-09
3qre_A	298	Crystal Structure Of An Enoyl-Coa Hydratase Echa12_		6e-09
4fzw_A	258	Crystal Structure Of The Paaf-paag Hydratase-isomer		2e-08
4fzw_C	274	Crystal Structure Of The Paaf-paag Hydratase-isomer		2e-08
3fdu_A	266	Crystal Structure Of A Putative Enoyl-Coa Hydratase		3e-08
3kqf_A	265	1.8 Angstrom Resolution Crystal Structure Of Enoyl-		4e-08
3rrv_A	276	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		4e-08
3pea_A	261	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		4e-08
3sll_A	290	Crystal Structure Of A Probable Enoyl-Coa Hydratase		6e-08
3p5m_A	255	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		8e-08
1nzy_A	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		1e-07
4f47_A	278	The Structure Of Enoyl-Coa Hydratase Echa19 From My		1e-07
1nzy_B	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		1e-07
2pbp_A	258	Crystal Structure Of Enoyl-Coa Hydrates Subunit I (		1e-07
3tlf_A	274	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		2e-07
3myb_A	286	Crystal Structure Of Enoyl-Coa Hydratase Mycobacter		2e-07
1jxz_A	269	Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coe		3e-07
3rsi_A	265	The Structure Of A Putative Enoyl-Coa HydrataseISOM		1e-06
2a7k_A	250	Carboxymethylproline Synthase (carb) From Pectobact		3e-06
2x58_A	727	The Crystal Structure Of Mfe1 Liganded With Coa Len		4e-06
3swx_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		4e-06
3zw8_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		4e-06
3pe8_A	256	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		7e-06
2vre_A	296	Crystal Structure Of Human Peroxisomal Delta3,5, De		9e-06
2ppy_A	265	Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) F		1e-05
1uiy_A	253	Crystal Structure Of Enoyl-Coa Hydratase From Therm		2e-05
3zwb_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		2e-05
2j5i_A	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		2e-05
2vsu_A	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		2e-05
2vsu_E	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		2e-05
2vsu_C	275	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		2e-05
2j5i_I	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		3e-05
2vsu_F	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		3e-05
2j5i_B	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		3e-05
2vss_E	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		3e-05
2vss_F	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		3e-05
1dci_A	275	Dienoyl-Coa Isomerase Length = 275		4e-05
3oc7_A	267	Crystal Structure Of An Enoyl-Coa Hydratase From My		4e-05
2fw2_A	260	Catalytic Domain Of Cdy Length = 260		9e-05
1xx4_A	261	Crystal Structure Of Rat Mitochondrial 3,2-Enoyl-Co		1e-04
3l3s_A	263	Crystal Structure Of An Enoyl-Coa HydrotaseISOMERAS		1e-04
3hin_A	275	Crystal Structure Of Putative Enoyl-Coa Hydratase F		1e-04
3g64_A	279	Crystal Structure Of Putative Enoyl-Coa Hydratase F		2e-04
2iex_A	272	Crystal Structure Of Dihydroxynapthoic Acid Synthet		2e-04
2fbm_A	291	Acetyltransferase Domain Of Cdy1 Length = 291		3e-04
2wtb_A	725	Arabidopsis Thaliana Multifuctional Protein, Mfp2 L		3e-04
3trr_A	256	Crystal Structure Of A Probable Enoyl-Coa Hydratase		6e-04
3qxi_A	265	Crystal Structure Of Enoyl-Coa Hydratase Echa1 From		7e-04
3njb_A	333	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		8e-04

>pdb|3BPT|A Chain A, Crystal Structure Of Human Beta-Hydroxyisobutyryl-Coa Hydrolase In Complex With Quercetin Length = 363

Iteration: 1
 Score =  182 bits (462), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 126/364 (34%), Positives = 192/364 (52%), Gaps = 46/364 (12%)
Query: 64  AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPR 123
           AEE + G     GV  ITL+RPK LNA+ L+   +    L +WE DP    ++I+G+G +
Sbjct: 5   AEEVLLGKKGCTGV--ITLNRPKFLNALTLNXIRQIYPQLKKWEQDPETFLIIIKGAGGK 62
Query: 124 AFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGI 183
           AFCAG DI+ V++E +K +   + P  F  EY L   +   +KPY++L+ G+T G G+G+
Sbjct: 63  AFCAGGDIR-VISEAEKAKQK-IAPVFFREEYXLNNAVGSCQKPYVALIHGITXGGGVGL 120
Query: 184 SGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDA 243
           S HG++R+ TEK L A PE  IGLFPDVG  Y   +    G +G +L +TG R+    D 
Sbjct: 121 SVHGQFRVATEKCLFAXPETAIGLFPDVGGGYFLPRLQ--GKLGYFLALTGFRLKG-RDV 177
Query: 244 LFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQ-- 301
             AG+ T +V S  L  L+E LLA+       ++I ++L  Y ++ + +     +L +  
Sbjct: 178 YRAGIATHFVDSEKLAXLEEDLLAL--KSPSKENIASVLENYHTESKIDRDKSFILEEHX 235
Query: 302 --ITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSL---------- 349
             I SCFS+  +V +IIE L++  SS       +A E L+ + K +P SL          
Sbjct: 236 DKINSCFSA-NTVEEIIENLQQDGSS-------FALEQLKVINKXSPTSLKITLRQLXEG 287
Query: 350 -------CLTQKYFSKVASAHGKTDNE--------LSKNPKWNPASLEEVNQSEVEALFE 394
                   LT +Y    A   G   +E          ++PKW PA L+EV + ++   F+
Sbjct: 288 SSKTLQEVLTXEYRLSQACXRGHDFHEGVRAVLIDKDQSPKWKPADLKEVTEEDLNNHFK 347
Query: 395 PLGT 398
            LG+
Sbjct: 348 SLGS 351

>pdb|4HDT|A Chain A, Crystal Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Thermoresistibile Length = 353

Iteration: 1
 Score =  152 bits (383), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 109/347 (31%), Positives = 168/347 (48%), Gaps = 48/347 (13%)
Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           GV ++TL+RPKA+N++   M       L  WE+D  V+ VL+ G+G R  CAG D+  + 
Sbjct: 18  GVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIY 77
Query: 136 AEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK 195
              + D       + +  EY L   I  Y KPY+S+MDG+ MG G+G+  HG  R+VT+ 
Sbjct: 78  HSAKADGAE--ARRFWFDEYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDT 135
Query: 196 TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS 255
           T +AMPE GIG  PDVG +Y+ ++ P  G +G +  +TG   S  +DA+  G    YVP 
Sbjct: 136 TKMAMPEVGIGFIPDVGGTYLLSRAP--GKLGLHAALTGAPFSG-ADAIVMGFADHYVPH 192
Query: 256 GNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQI 315
             +     A++A          + A LA ++ +P   +PL      I  C++ + +V  I
Sbjct: 193 DKIDEFTRAVIA--------DGVDAALAAHAQEPPA-SPLAEQRSWIDECYTGD-TVADI 242
Query: 316 IEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDN------- 368
           I  L+ H + A       A EA   +   +P +L +T +   + A      D        
Sbjct: 243 IAALRAHDAPA-------AGEAADLIATRSPIALSVTLESVRRAAKLQSLEDTLRQEYRV 295
Query: 369 -------------------ELSKNPKWNPASLEEVNQSEVEALFEPL 396
                              +  +NPKW PA+L EV +++VEA F P+
Sbjct: 296 SCASLKSHDLVEGIRAQLVDKDRNPKWRPATLAEVTEADVEAYFAPV 342

>pdb|4J2U|A Chain A, Crystal Structure Of An Enoyl-coa Hydratase From Rhodobacter Sphaeroides 2.4.1 Length = 365

Iteration: 1
 Score =  146 bits (368), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/349 (30%), Positives = 160/349 (45%), Gaps = 62/349 (17%)
Query: 80  ITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDI-----KGV 134
           ITL RP ALNA+      +  + L  W  DP V+ V+I+  GPRAFCAG DI     +GV
Sbjct: 37  ITLSRPAALNALTCAXVQEIDAALRGWIGDPEVELVVIDAEGPRAFCAGGDIAELHGRGV 96
Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             +    ++       +  EY    +I+ + KP +SL  G T G G+G+  H R+RIV E
Sbjct: 97  AGDHAFGQD------FWRVEYRXNDRIAAFPKPIVSLXQGFTXGGGVGLGCHARHRIVGE 150
Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVP 254
            + ++ PE  IGL PDVG +++ A+ PG   +G +LG+TG R   P DA+FAG    +VP
Sbjct: 151 TSQISXPECAIGLVPDVGGTHLLARAPG--RIGVWLGLTGARXG-PGDAIFAGFADRFVP 207
Query: 255 SGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQ 314
             +   L  AL     +   H           + PEG  P+  L  +I   F+       
Sbjct: 208 EADWPDLIAALEGGDLALPDH-----------AAPEGRLPV--LQDEIDRLFAG------ 248
Query: 315 IIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA-------------- 360
            + E+     + +T +A    EAL+ + + +P +L  T +   ++               
Sbjct: 249 TLAEIPARLEATDTPLAA---EALKALRRSSPLALAATLEILQRLGPSAGIREALDLEYR 305
Query: 361 ---SAHGKTDN---------ELSKNPKWNPASLEEVNQSEVEALFEPLG 397
               A G+ D          +  ++P+W     E V   EV +L  PLG
Sbjct: 306 FTYRAQGQADFLEGIRAAIIDKDRSPRWRHGDPEAVRPEEVASLLAPLG 354

>pdb|3JU1|A Chain A, Crystal Structure Of Enoyl-Coa HydrataseISOMERASE FAMILY PROTEIN Length = 407

Iteration: 1
 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 122/227 (53%), Gaps = 11/227 (4%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV- 135
           V V+TL+  KALNA++LD        L+ W+ DP + CV+++GSG +AFCAG D++ +  
Sbjct: 52  VGVVTLNVEKALNALDLDXVRAXTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYH 111
Query: 136 AEIQKDRNTPLVPKVF-TAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
           A +        V KVF   EY L   +  Y KP +   DG+  G G+G+     +++VTE
Sbjct: 112 ASVAAKGQVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVXGGGLGLXAGASHKVVTE 171
Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVP 254
            + +A PE  IGL+PDVG SY   + P  G  G +LG+T    +  +DA + GL   Y+ 
Sbjct: 172 TSRIAXPEVTIGLYPDVGGSYFLNRXP--GKXGLFLGLTAYHXNA-ADACYVGLADHYLN 228
Query: 255 SGNLGSLKEALLAVTFSEDP---HQDIVALLAKYSSD---PEGEAPL 295
             +     +A   + +S+ P   HQ +   + + S+    P+G++ L
Sbjct: 229 RDDKELXFDAXATLDWSDSPALNHQRLDTXINELSNQVDIPKGDSVL 275

>pdb|3QXZ|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 114/254 (44%), Gaps = 37/254 (14%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVAV+TL  P   N+  +++  +  +     + DP V+ +++ G+ P AFC+G  I   
Sbjct: 15  DGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPP-AFCSGAQISAA 73
Query: 135 VAEIQKDRN-----TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRY 189
                  RN     +P+ P  F           E + P I+ ++G  +G G+ ++ H   
Sbjct: 74  AETFAAPRNPDFSASPVQPAAF-----------ELRTPVIAAVNGHAIGIGMTLALHADI 122
Query: 190 RIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLG 249
           RI+ E+   A+P+   G+ PD   ++       G +V A L +TG   S    A+  GL 
Sbjct: 123 RILAEEGRYAIPQVRFGVAPD-ALAHWTLPRLVGTAVAAELLLTGASFSA-QRAVETGLA 180
Query: 250 TDYVPSGN-LGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLL--PQITSCF 306
              +P+G  LG+      A+  + D   ++          PE  A  K LL   Q+T   
Sbjct: 181 NRCLPAGKVLGA------ALRMAHDIATNVA---------PESAALTKRLLWDAQMTGMS 225
Query: 307 SSEKSVRQIIEELK 320
           ++E + R+  + L+
Sbjct: 226 AAEVAARETADHLR 239

>pdb|3R0O|A Chain A, Crystal Structure Of Carnitinyl-Coa Hydratase From Mycobacterium Avium Length = 273

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 94/194 (48%), Gaps = 15/194 (7%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           VA+IT+DRP A NA+N  +       L+E + DP V  V+I G+G ++FCAG D+K    
Sbjct: 25  VALITIDRPDARNAVNGAVSTAVGDALEEAQRDPEVWAVVITGAGDKSFCAGADLKA--- 81
Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEY-KKPYISLMDGVTMGFGIGISGHGRYRIVTEK 195
            I +  N   +      E+     +  +  KP I+ ++G  +G G  ++      I  E 
Sbjct: 82  -ISRGEN---LYHAEHPEWGFAGYVHHFIDKPTIAAVNGTALGGGSELALASDLVIACES 137
Query: 196 TLLAMPENGIGLFPDVGFSY-IAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVP 254
               +PE   GL    G  + I  + P    V   L +TG+ + T SDAL  GL  + VP
Sbjct: 138 ASFGLPEVKRGLIAGAGGVFRIVEQLP--RKVALELVLTGEPM-TASDALRWGLINEVVP 194
Query: 255 SGNLGSLKEALLAV 268
               G++ EA LA+
Sbjct: 195 D---GTVVEAALAL 205

>pdb|2EJ5|A Chain A, Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydratase Subunit Ii) From Geobacillus Kaustophilus Length = 257

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 75/140 (53%), Gaps = 9/140 (6%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           VA +TL+RP  LNA    M+ +    L +  +DP V+CV+I G+G RAFCAG D+ GV  
Sbjct: 13  VAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAG-RAFCAGEDLSGVTE 71
Query: 137 EIQKDRNTPLVPKVFTAEYSLICK-ISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK 195
           E+           V  + Y+ + K +   +KP ++ ++G   G G+ ++    +R+++EK
Sbjct: 72  EMDHG-------DVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEK 124
Query: 196 TLLAMPENGIGLFPDVGFSY 215
              A     +GL PD G  Y
Sbjct: 125 ASFAPAFIHVGLVPDAGHLY 144

>pdb|1MJ3|A Chain A, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In Complex With Hexadienoyl-Coa Length = 260

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 102/219 (46%), Gaps = 13/219 (5%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V +I L+RPKALNA+   +  +    L+ +E DP V  +++ G G +AF AG DIK    
Sbjct: 17  VGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTG-GEKAFAAGADIK---- 71
Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
           E+Q           F + +  I +I   KKP I+ ++G  +G G  ++         EK 
Sbjct: 72  EMQNRTFQDCYSGKFLSHWDHITRI---KKPVIAAVNGYALGGGCELAMMCDIIYAGEKA 128
Query: 197 LLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSG 256
               PE  +G  P  G +    +   G S+   + +TG RIS   DA  AGL +   P  
Sbjct: 129 QFGQPEILLGTIPGAGGTQRLTRAV-GKSLAMEMVLTGDRIS-AQDAKQAGLVSKIFPVE 186
Query: 257 NLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPL 295
            L  ++EA+       +  + IVA +AK S +   E  L
Sbjct: 187 TL--VEEAIQCAEKIANNSKIIVA-MAKESVNAAFEMTL 222

>pdb|3QMJ|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 From Mycobacterium Marinum Length = 256

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 88/175 (50%), Gaps = 9/175 (5%)
Query: 75  NGVAVITLDRPKALNAMNLDM-DIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKG 133
           N V  +TL+RP+ALNA N  + D   ++ LD  + DP+V  VL+ GSG R F AG D+  
Sbjct: 14  NRVRTLTLNRPEALNAFNEALYDATAQALLDAAD-DPQVAVVLLTGSG-RGFSAGTDL-- 69
Query: 134 VVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
             AE+Q     P   +       LI  ++ + KP I  ++G+ +G G  I G+     ++
Sbjct: 70  --AEMQARITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMS 127
Query: 194 EKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGL 248
               L  P   +G+ P+   SY+  +  G  +  A+L M+ + I    +AL  GL
Sbjct: 128 STARLKCPFTSLGVAPEAASSYLLPQLVGRQN-AAWLLMSSEWIDA-EEALRMGL 180

>pdb|1DUB|A Chain A, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5 Length = 261

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 102/219 (46%), Gaps = 13/219 (5%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V +I L+RPKALNA+   +  +    L+ +E DP V  +++ G G +AF AG DIK    
Sbjct: 18  VGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTG-GEKAFAAGADIK---- 72
Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
           E+Q           F + +  I +I   KKP I+ ++G  +G G  ++         EK 
Sbjct: 73  EMQNRTFQDCYSGKFLSHWDHITRI---KKPVIAAVNGYALGGGCELAMMCDIIYAGEKA 129
Query: 197 LLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSG 256
               PE  +G  P  G +    +   G S+   + +TG RIS   DA  AGL +   P  
Sbjct: 130 QFGQPEILLGTIPGAGGTQRLTRAV-GKSLAMEMVLTGDRIS-AQDAKQAGLVSKIFPVE 187
Query: 257 NLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPL 295
            L  ++EA+       +  + IVA +AK S +   E  L
Sbjct: 188 TL--VEEAIQCAEKIANNSKIIVA-MAKESVNAAFEMTL 223

>pdb|1EY3|A Chain A, Structure Of Enoyl-Coa Hydratase Complexed With The Substrate Dac-Coa Length = 258

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 102/219 (46%), Gaps = 13/219 (5%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V +I L+RPKALNA+   +  +    L+ +E DP V  +++ G G +AF AG DIK    
Sbjct: 15  VGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTG-GEKAFAAGADIK---- 69
Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
           E+Q           F + +  I +I   KKP I+ ++G  +G G  ++         EK 
Sbjct: 70  EMQNRTFQDCYSGKFLSHWDHITRI---KKPVIAAVNGYALGGGCELAMMCDIIYAGEKA 126
Query: 197 LLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSG 256
               PE  +G  P  G +    +   G S+   + +TG RIS   DA  AGL +   P  
Sbjct: 127 QFGQPEILLGTIPGAGGTQRLTRAV-GKSLAMEMVLTGDRIS-AQDAKQAGLVSKIFPVE 184
Query: 257 NLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPL 295
            L  ++EA+       +  + IVA +AK S +   E  L
Sbjct: 185 TL--VEEAIQCAEKIANNSKIIVA-MAKESVNAAFEMTL 220

>pdb|3QYR|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 98/209 (46%), Gaps = 18/209 (8%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V  +TL+RP+A NA++  +  ++   L + E+D  V  V+I G+ P  FCAG+D+K    
Sbjct: 18  VRTLTLNRPQARNALSAALRDRFFGALADAETDDDVDVVIITGADP-VFCAGLDLK---- 72
Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
           E+      P +   + A            KP I  ++G  +  G+ ++ +    I +E  
Sbjct: 73  ELGGSSALPDISPRWPA----------LTKPVIGAINGAAVTGGLELALYCDILIASENA 122
Query: 197 LLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSG 256
             A     +GL P  G S    +  G G +   + +TG  +S  +DAL AGL T+ VP  
Sbjct: 123 RFADTHARVGLLPTWGLSVRLPQKVGIG-LARRMSLTGDYLSA-ADALRAGLVTEVVPHD 180
Query: 257 NLGSLKEALLAVTFSEDPHQDIVALLAKY 285
            L    +A +A +   +    + ALLA Y
Sbjct: 181 QLLGAAQA-VAASIVGNNQNAVRALLASY 208

>pdb|2HW5|A Chain A, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa) Hydratase Short Chain 1, Echs1 Length = 286

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 106/242 (43%), Gaps = 15/242 (6%)
Query: 56  FATMAAAGAEEFVKGNVH--PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVK 113
           F +MA+    E++        N V +I L+RPKALNA+   +  +    L  +E DP V 
Sbjct: 20  FQSMASGANFEYIIAEKRGKNNTVGLIQLNRPKALNALCDGLIDELNQALKIFEEDPAVG 79
Query: 114 CVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMD 173
            +++ G G +AF AG DIK    E+Q           F   +     +++ KKP I+ ++
Sbjct: 80  AIVLTG-GDKAFAAGADIK----EMQNLSFQDCYSSKFLKHWD---HLTQVKKPVIAAVN 131
Query: 174 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMT 233
           G   G G  ++         EK   A PE  IG  P  G +    +   G S+   + +T
Sbjct: 132 GYAFGGGCELAMMCDIIYAGEKAQFAQPEILIGTIPGAGGTQRLTRAV-GKSLAMEMVLT 190
Query: 234 GKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEA 293
           G RIS   DA  AGL +   P   + +L E  +        +  IV  +AK S +   E 
Sbjct: 191 GDRIS-AQDAKQAGLVSKICP---VETLVEEAIQCAEKIASNSKIVVAMAKESVNAAFEM 246
Query: 294 PL 295
            L
Sbjct: 247 TL 248

>pdb|3R9T|A Chain A, Structure Of Echa1_1 From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 267

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 99/200 (49%), Gaps = 17/200 (8%)
Query: 61  AAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS 120
           A GA    +GNV      VIT++RP+A NA+N  + I     L+E + DP V+ V++ G+
Sbjct: 8   APGALAERRGNVM-----VITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGA 62
Query: 121 GPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEY-KKPYISLMDGVTMGF 179
           G ++FCAG D+K +    +++   P  P     E+     +  +  KP I+ ++G  +G 
Sbjct: 63  GDKSFCAGADLKAIAR--RENLYHPDHP-----EWGFAGYVRHFIDKPTIAAVNGTALGG 115
Query: 180 GIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY-IAAKGPGGGSVGAYLGMTGKRIS 238
           G  ++      +  E+    +PE   GL    G  + IA + P    V   L +TG+ +S
Sbjct: 116 GTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLP--RKVAMRLLLTGEPLS 173
Query: 239 TPSDALFAGLGTDYVPSGNL 258
             + A   GL  + V +G++
Sbjct: 174 AAA-ARDWGLINEVVEAGSV 192

>pdb|3R9S|A Chain A, Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Avium 104 Length = 267

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 99/200 (49%), Gaps = 17/200 (8%)
Query: 61  AAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS 120
           A GA    +GNV      VIT++RP+A NA+N  + I     L+E + DP V+ V++ G+
Sbjct: 8   APGALAERRGNVM-----VITINRPEARNAVNAAVSIGVGDALEEAQHDPEVRAVVLTGA 62
Query: 121 GPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEY-KKPYISLMDGVTMGF 179
           G ++FCAG D+K +    +++   P  P     E+     +  +  KP I+ ++G  +G 
Sbjct: 63  GDKSFCAGADLKAIAR--RENLYHPDHP-----EWGFAGYVRHFIDKPTIAAVNGTALGG 115
Query: 180 GIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY-IAAKGPGGGSVGAYLGMTGKRIS 238
           G  ++      +  E+    +PE   GL    G  + IA + P    V   L +TG+ +S
Sbjct: 116 GTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLP--RKVAMRLLLTGEPLS 173
Query: 239 TPSDALFAGLGTDYVPSGNL 258
             + A   GL  + V +G++
Sbjct: 174 AAA-ARDWGLINEVVEAGSV 192

>pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium Avium Length = 270

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 96/209 (45%), Gaps = 18/209 (8%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V  +TL+RP+A NA++  +  ++   L + E+D  V  V+I G+ P  FCAG+D+K    
Sbjct: 35  VRTLTLNRPQARNALSAALRDRFFGALADAETDDDVDVVIITGADP-VFCAGLDLK---- 89
Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
           E+      P +   + A            KP I  ++G  +  G+ ++ +    I +E  
Sbjct: 90  ELGGSSALPDISPRWPA----------LTKPVIGAINGAAVTGGLELALYCDILIASENA 139
Query: 197 LLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSG 256
             A     +GL P  G S    +  G G +   + +TG  +S  +DAL AGL T+ VP  
Sbjct: 140 RFADTHARVGLLPTWGLSVRLPQKVGIG-LARRMSLTGDYLSA-ADALRAGLVTEVVPHD 197
Query: 257 NLGSLKEALLAVTFSEDPHQDIVALLAKY 285
            L     A +A +   +    + ALL  Y
Sbjct: 198 QLLGAARA-VAASIVGNNQNAVRALLTSY 225

>pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein Paag Length = 254

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 95/201 (47%), Gaps = 12/201 (5%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GV V+TL+RP+ LNA+  ++     + L E E D  V+ +L+ G+G RAF AG D+   
Sbjct: 8   DGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAG-RAFSAGQDLTEF 66
Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
                 DR  P           ++  +S  +KP +  ++GV  G G+ ++  G  R+   
Sbjct: 67  -----GDRK-PDYEAHLRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAV 120
Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVP 254
                     IGL PD G S++  +  G       L +   R+S   +AL  GL    VP
Sbjct: 121 GASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELL-LLSPRLSA-EEALALGLVHRVVP 178
Query: 255 SGNLGSLKEAL-LAVTFSEDP 274
           +  L  ++EAL LA   ++ P
Sbjct: 179 AEKL--MEEALSLAKELAQGP 197

>pdb|3Q0J|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Complex With The Inhibitor Acetoacetylcoa Length = 258

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 12/183 (6%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V +ITL+RP+ALNA+N  +  +  S   E + DP +  ++I GS  +AF AG DIK +  
Sbjct: 15  VGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSA-KAFAAGADIKEMAD 73
Query: 137 EIQKDRNTPLVPKVFTAE-YSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK 195
               D         FTA+ ++   K++  + P I+ + G  +G G  ++      I  + 
Sbjct: 74  LTFAD--------AFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADT 125
Query: 196 TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS 255
                PE  +G+ P +G S    +  G       L +TG+ +   ++A  +GL +  VP+
Sbjct: 126 AKFGQPEIKLGVLPGMGGSQRLTRAIGKAK-AMDLILTGRTMD-AAEAERSGLVSRVVPA 183
Query: 256 GNL 258
            +L
Sbjct: 184 DDL 186

>pdb|3H81|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 278

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 12/183 (6%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V +ITL+RP+ALNA+N  +  +  S   E + DP +  ++I GS  +AF AG DIK +  
Sbjct: 35  VGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSA-KAFAAGADIKEMAD 93
Query: 137 EIQKDRNTPLVPKVFTAE-YSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK 195
               D         FTA+ ++   K++  + P I+ + G  +G G  ++      I  + 
Sbjct: 94  LTFAD--------AFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADT 145
Query: 196 TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS 255
                PE  +G+ P +G S    +  G       L +TG+ +   ++A  +GL +  VP+
Sbjct: 146 AKFGQPEIKLGVLPGMGGSQRLTRAIGKAK-AMDLILTGRTMD-AAEAERSGLVSRVVPA 203
Query: 256 GNL 258
            +L
Sbjct: 204 DDL 206

>pdb|3PZK|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Apo Form Length = 257

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 12/183 (6%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V +ITL+RP+ALNA+N  +  +  S   E + DP +  ++I GS  +AF AG DIK +  
Sbjct: 14  VGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSA-KAFAAGADIKEMAD 72
Query: 137 EIQKDRNTPLVPKVFTAE-YSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK 195
               D         FTA+ ++   K++  + P I+ + G  +G G  ++      I  + 
Sbjct: 73  LTFAD--------AFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADT 124
Query: 196 TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS 255
                PE  +G+ P +G S    +  G       L +TG+ +   ++A  +GL +  VP+
Sbjct: 125 AKFGQPEIKLGVLPGMGGSQRLTRAIGKAK-AMDLILTGRTMD-AAEAERSGLVSRVVPA 182
Query: 256 GNL 258
            +L
Sbjct: 183 DDL 185

>pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycob Smegmatis Length = 263

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 92/193 (47%), Gaps = 18/193 (9%)
Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           GV +I LDRP ALNA+N  ++ +      ++++D  +  +++ GS  RAF AG DI  +V
Sbjct: 19  GVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGS-ERAFAAGADIAEMV 77
Query: 136 AEIQKDRNTPLVPKVFTAEYSLIC---KISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
                     L P     E +L+     +++ +KP ++ + G  +G G  ++      I 
Sbjct: 78  T---------LTPHQ-ARERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIA 127
Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
            +      PE  +G+ P +G +    +  G       L +TG+ + T  +A   GL +  
Sbjct: 128 ADTARFGQPEITLGILPGLGGTQRLTRAVGKAK-AMDLCLTGRSL-TAEEAERVGLVSRI 185
Query: 253 VPSGNLGSLKEAL 265
           VP+ +L  L EAL
Sbjct: 186 VPAADL--LDEAL 196

>pdb|3QRE|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase Echa12_1 From Mycobacterium Marinum Length = 298

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 8/164 (4%)
Query: 58  TMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLI 117
           +M+AA A++ V     P GVA+IT +R   LNA   D+   + + +D  E+DP ++ +++
Sbjct: 21  SMSAADAQDAVLYEATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVL 80
Query: 118 EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICK-----ISEYKKPYISLM 172
            G G R FCAG  +    A    D+          A+  L+ +     ++  +KP I+ +
Sbjct: 81  TGRG-RGFCAGAYLGSADAAAGYDKTMAKAKDANLAD--LVGERPPHFVTMLRKPVIAAI 137
Query: 173 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYI 216
           +G  +G G+  +     R        A      GL  + G S+I
Sbjct: 138 NGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWI 181

>pdb|4FZW|A Chain A, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 258

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 10/179 (5%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V ++TL+RP A NA+N  + ++  + L+   +D  +   +I G+  R F AG D+  +  
Sbjct: 15  VLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNA-RFFAAGADLNEMA- 72
Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
             +KD    L   +      L  ++  + KP I+ ++G  +G G  ++      +  E  
Sbjct: 73  --EKD----LAATLNDTRPQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENA 126
Query: 197 LLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPS 255
              +PE  +G+ P  G +    +   G S+ + + ++G+ I T   A  AGL +D  PS
Sbjct: 127 RFGLPEITLGIMPGAGGTQRLIRSV-GKSLASKMVLSGESI-TAQQAQQAGLVSDVFPS 183

>pdb|4FZW|C Chain C, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 274

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 18/180 (10%)
Query: 66  EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAF 125
           EF+  +V   GV  +TL+RP+ LN+ N +M  +    L + E D  ++C+L+ G+G R F
Sbjct: 15  EFILSHVE-KGVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAG-RGF 72
Query: 126 CAGMDIKGVVAEIQKDRNT-PLVP------KVFTAEYSLICKISEYKKPYISLMDGVTMG 178
           CAG D+         DRN  P  P       V      L+ ++++  KP I  ++GV  G
Sbjct: 73  CAGQDL--------NDRNVDPTGPAPDLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAG 124
Query: 179 FGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRIS 238
            G  ++  G   I        M  + +GL PD G +++  +   G +    L + G ++S
Sbjct: 125 AGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPR-VAGRARAMGLALLGNQLS 183

>pdb|3FDU|A Chain A, Crystal Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Acinetobacter Baumannii Length = 266

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 17/192 (8%)
Query: 71  NVHPN-------GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPR 123
           ++HP+       GV  + ++RP+A NA+  ++ +     LDE + +  V+ V++ G+   
Sbjct: 2   SLHPHLNANLEGGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGA-EH 60
Query: 124 AFCAGMDIKGVVAEIQKDRNTPL--VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGI 181
            F AG D+K  +  +Q     P   VP      + L+   +   KP I  + GV +G G+
Sbjct: 61  DFTAGNDMKDFMGFVQNPNAGPAGQVPP-----FVLLKSAARLSKPLIIAVKGVAIGIGV 115
Query: 182 GISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPS 241
            I             L  +P   +GL P+ G S +  K   G    A L  T K+ +  +
Sbjct: 116 TILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVK-QAGYHKAAELLFTAKKFNAET 174
Query: 242 DALFAGLGTDYV 253
            AL AGL  + V
Sbjct: 175 -ALQAGLVNEIV 185

>pdb|3KQF|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis. Length = 265

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 77/162 (47%), Gaps = 6/162 (3%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V  I+L+R +  N+++L +  + ++ L +   +   + V++ G+G +AFCAG D+K    
Sbjct: 19  VVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKE--- 75
Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
             +   N   V    +   +    + +  +P I+ ++G+ +G G  +S    +RI  E  
Sbjct: 76  --RAGXNEEQVRHAVSXIRTTXEXVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESA 133
Query: 197 LLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRIS 238
            L + E  + + P  G +    +  G G     +  TG+RIS
Sbjct: 134 SLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELI-YTGRRIS 174

>pdb|3RRV|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 276

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Query: 71  NVHPNG-VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGM 129
           +V  +G + +ITL+RP +LN++N D+ +           DP  +  +I G+G RAF AG 
Sbjct: 31  DVRADGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAG-RAFSAGG 89
Query: 130 DIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRY 189
           D  G + E+  D +  L  K       ++  ++  + P ++ ++G  +G G  +      
Sbjct: 90  DF-GYLKELSADAD--LRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDI 146
Query: 190 RIVTEKTLLAMPENGIGLF 208
             + E   LA P   +GL 
Sbjct: 147 VYIAENAYLADPHVQVGLV 165

>pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis Str. 'ames Ancestor' Length = 261

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 8/140 (5%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + +AV TL+   A NA +  +       +D+ E D  ++ V+I G G R F AG DIK  
Sbjct: 14  DHIAVATLNHAPA-NAXSSQVXHDVTELIDQVEKDDNIRVVVIHGEG-RFFSAGADIKEF 71
Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
            +  +  + T L  ++    +  + K S   KP I+ + G  +G G+  +     R  TE
Sbjct: 72  TSVTEAKQATELA-QLGQVTFERVEKCS---KPVIAAIHGAALGGGLEFAXSCHXRFATE 127
Query: 195 KTLLAMPENGIGLFPDVGFS 214
              L +PE  +GL P  GF+
Sbjct: 128 SAKLGLPELTLGLIP--GFA 145

>pdb|3SLL|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 290

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 74/150 (49%), Gaps = 6/150 (4%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK--GV 134
           +A++TL+RP+ +NAM  D+ + +K  L +   D  V+ V+I G+G + FC+G D K  G 
Sbjct: 34  IALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAG-KGFCSGADQKSAGP 92
Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
           +  I       +  +       +I  +    +P I+ ++G  +G G+ ++     R+ ++
Sbjct: 93  IPHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQ 152
Query: 195 KTLL--AMPENGIGLFPDVGFSYIAAKGPG 222
                 A   NG+    ++G SY+  +  G
Sbjct: 153 DAYFRAAGINNGL-TASELGLSYLLPRAIG 181

>pdb|3P5M|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Avium Length = 255

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 12/144 (8%)
Query: 73  HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
           H   V  I LDRP+ LNA++  M  +    + + E+D  V+ VL+ G+G RAFC+G D+ 
Sbjct: 12  HDGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAG-RAFCSGGDLT 70
Query: 133 GVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
           G       D    +V             I+   KP I+ + G  +GFG  ++      + 
Sbjct: 71  GGDTAGAADAANRVVR-----------AITSLPKPVIAGVHGAAVGFGCSLALACDLVVA 119
Query: 193 TEKTLLAMPENGIGLFPDVGFSYI 216
              +   +    +GL PD G S +
Sbjct: 120 APASYFQLAFTRVGLMPDGGASAL 143

>pdb|1NZY|A Chain A, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 9/152 (5%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVA IT+  P+  NA+++    +    L+  E D  V  V+I G+   AFCAG  ++  
Sbjct: 11  DGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGA-EDAFCAGFYLR-- 67
Query: 135 VAEIQKDRNTPLVPKVFTAE----YSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYR 190
             EI  D+    V   F       + +I KI   K+P ++ ++GV  G G+GIS      
Sbjct: 68  --EIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMA 125
Query: 191 IVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG 222
           I  +        + IG+  D   SY  A+  G
Sbjct: 126 ICADSAKFVCAWHTIGIGNDTATSYSLARIVG 157

>pdb|4F47|A Chain A, The Structure Of Enoyl-Coa Hydratase Echa19 From Mycobacterium Marinum Length = 278

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 11/189 (5%)
Query: 79  VITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEI 138
           ++T++RP   NA++ +M        D  ++DP ++C ++ G+G   FCAGMD+K    + 
Sbjct: 32  IVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAG-GYFCAGMDLKAATKKP 90
Query: 139 QKD--RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
             D  ++    P    A    + K    KKP I+ ++G  +  G  I      R+  E  
Sbjct: 91  PGDSFKDGSYDPSRIDA----LLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESA 146
Query: 197 LLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSG 256
              + E    L+P +G S +        +V   L +TG+ I T ++A   GL    VP G
Sbjct: 147 KFGISEAKWSLYP-MGGSAVRLVRQIPYTVACDLLLTGRHI-TAAEAKEMGLVGHVVPDG 204
Query: 257 NLGSLKEAL 265
              +L +AL
Sbjct: 205 Q--ALTKAL 211

>pdb|1NZY|B Chain B, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 9/152 (5%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVA IT+  P+  NA+++    +    L+  E D  V  V+I G+   AFCAG  ++  
Sbjct: 11  DGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGA-EDAFCAGFYLR-- 67
Query: 135 VAEIQKDRNTPLVPKVFTAE----YSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYR 190
             EI  D+    V   F       + +I KI   K+P ++ ++GV  G G+GIS      
Sbjct: 68  --EIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMA 125
Query: 191 IVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG 222
           I  +        + IG+  D   SY  A+  G
Sbjct: 126 ICADSAKFVCAWHTIGIGNDTATSYSLARIVG 157

>pdb|2PBP|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates Subunit I (Gk_2039) From Geobacillus Kaustophilus Hta426 Length = 258

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 10/175 (5%)
Query: 66  EFVKGNVHPNG-VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRA 124
           EFV       G V +I L RP  LNA++  M  +  + ++ ++ + +V+ +++ G G RA
Sbjct: 3   EFVSIAARQEGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRG-RA 61
Query: 125 FCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGIS 184
           F AG DI+    E+ KD    L    +  +++   ++S  K P I+ ++G+ +G G  ++
Sbjct: 62  FAAGADIQ----EMAKDDPIRL---EWLNQFADWDRLSIVKTPMIAAVNGLALGGGFELA 114
Query: 185 GHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRIST 239
                 + +       PE  +G+ P  G +    K  G      +L  TG R+S 
Sbjct: 115 LSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWL-WTGARMSA 168

>pdb|3TLF|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 274

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 13/137 (9%)
Query: 78  AVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAE 137
           A ITL+RP ALNA++  M  + ++   E E+D RV  +++ G+G RAFC+G D+K    E
Sbjct: 22  ATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTG-RAFCSGADVK----E 76
Query: 138 IQKDRNTPLVPKVFTAEYSLICKISE-------YKKPYISLMDGVTMGFGIGISGHGRYR 190
           I +D    +  + + + Y       E         KP ++ ++G+  G G+         
Sbjct: 77  IPEDGKV-IYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIV 135
Query: 191 IVTEKTLLAMPENGIGL 207
           I +E+     P   IGL
Sbjct: 136 IASEQATFFDPHVSIGL 152

>pdb|3MYB|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Mycobacterium Smegm Length = 286

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 8/143 (5%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
            GV  +TL+RP+A NA++  M             D  V+ V++  SG +AFCAG D+K +
Sbjct: 34  RGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASG-KAFCAGHDLKEM 92
Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
            AE  ++       K+F     ++  I     P I+ + G+    G  +       + T 
Sbjct: 93  RAEPSRE----YYEKLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATR 148
Query: 195 KTLLAMPENGIGLF---PDVGFS 214
               A+    +GLF   P V  S
Sbjct: 149 DARFAVSGINVGLFCSTPGVALS 171

>pdb|1JXZ|A Chain A, Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coenzyme A Dehalogenase Complexed With 4-Hydroxybenzoyl-Coenzyme A (Product) Length = 269

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 9/152 (5%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVA IT+  P+  NA+++    +    L+  E D  V  V+I G+   AFCAG  ++  
Sbjct: 11  DGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGA-EDAFCAGFYLR-- 67
Query: 135 VAEIQKDRNTPLVPKVFTAE----YSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYR 190
             EI  D+    V   F         +I KI   K+P ++ ++GV  G G+GIS      
Sbjct: 68  --EIPLDKGVAGVRDHFRIAALWWQQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMA 125
Query: 191 IVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG 222
           I  +        + IG+  D   SY  A+  G
Sbjct: 126 ICADSAKFVCAWHTIGIGNDTATSYSLARIVG 157

>pdb|3RSI|A Chain A, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 265

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V ++T++RP   NA++ +M  ++ +  DE + D  ++  ++ G+G  A+C G D+     
Sbjct: 19  VVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGS-AYCVGGDLSD--G 75
Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
            + +D + P +      +  L+       KP I+ ++G  +G G  +      R+  E  
Sbjct: 76  WMVRDGSAPPLDPATIGKGLLLSHT--LTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHA 133
Query: 197 LLAMPENGIGLFPDVG 212
              +PE   GL P  G
Sbjct: 134 TFGLPEVQRGLVPGAG 149

>pdb|2A7K|A Chain A, Carboxymethylproline Synthase (carb) From Pectobacterium Carotovora, Apo Enzyme Length = 250

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 6/132 (4%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V VITLD P   N  +  ++   K  L    +D  V+ V++ G   R+F AG D      
Sbjct: 10  VRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFN---- 65
Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
           E+++   +  + +       L   +    KP I+ +DG  +G G   +     R++    
Sbjct: 66  EVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTA 125
Query: 197 LLAMPE--NGIG 206
              MPE  +GIG
Sbjct: 126 NFVMPELKHGIG 137

>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa Length = 727

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 71/136 (52%), Gaps = 13/136 (9%)
Query: 74  PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKG 133
           P+ +A+I L  P  +NA++  +  + ++ L +  SD  VK ++I G+    FCAG DI G
Sbjct: 13  PHSLAMIRLCNP-PVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGN-FCAGADIHG 70
Query: 134 VVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
             A           P +  A  SL+ +I  Y+KP ++ + GV +G G+ ++    YRI  
Sbjct: 71  FSA---------FTPGL--ALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIAN 119
Query: 194 EKTLLAMPENGIGLFP 209
            K  + +PE  +G+ P
Sbjct: 120 AKARVGLPEVTLGILP 135

>pdb|3SWX|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 5/133 (3%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V VI L+RP   NA +  M  +    L E+E+D  ++  ++ G GP  F AG+D+  V A
Sbjct: 19  VLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGP-LFTAGLDLASVAA 77
Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
           EIQ      L P+     + +  +  +  KP +  + G  +  GI ++      I  E  
Sbjct: 78  EIQG--GASLTPEGGINPWQVDGR--QLSKPLLVAVHGKVLTLGIELALAADIVIADETA 133
Query: 197 LLAMPENGIGLFP 209
             A  E   G++P
Sbjct: 134 TFAQLEVNRGIYP 146

>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) In Apo Form Length = 742

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 71/136 (52%), Gaps = 13/136 (9%)
Query: 74  PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKG 133
           P+ +A+I L  P  +NA++  +  + ++ L +  SD  VK ++I G+    FCAG DI G
Sbjct: 28  PHSLAMIRLCNP-PVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGN-FCAGADIHG 85
Query: 134 VVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
             A           P +  A  SL+ +I  Y+KP ++ + GV +G G+ ++    YRI  
Sbjct: 86  FSA---------FTPGL--ALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIAN 134
Query: 194 EKTLLAMPENGIGLFP 209
            K  + +PE  +G+ P
Sbjct: 135 AKARVGLPEVTLGILP 150

>pdb|3PE8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 256

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 98/209 (46%), Gaps = 18/209 (8%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V  +TL+RP++ NA++ ++   +   L + ++D  V  V++ G+ P  FCAG+D+K +  
Sbjct: 19  VRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADP-VFCAGLDLKEL-- 75
Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
                 +T  +P +         K  +  KP I  ++G  +  G+ ++ +    I +E  
Sbjct: 76  -----GDTTELPDISP-------KWPDMTKPVIGAINGAAVTGGLELALYCDILIASENA 123
Query: 197 LLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSG 256
             A     +GL P  G S    +  G G +   + +TG  +S   DAL AGL T+ V   
Sbjct: 124 KFADTHARVGLMPTWGLSVRLPQKVGVG-LARRMSLTGDYLSA-QDALRAGLVTEVVAHD 181
Query: 257 NLGSLKEALLAVTFSEDPHQDIVALLAKY 285
           +L +     +A +   +  + + ALL  Y
Sbjct: 182 DLLTAARR-VAASIVGNNQKAVRALLDSY 209

>pdb|2VRE|A Chain A, Crystal Structure Of Human Peroxisomal Delta3,5, Delta2,4-Dienoyl Coa Isomerase Length = 296

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 85/205 (41%), Gaps = 8/205 (3%)
Query: 56  FATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCV 115
           F +MA   + E ++       V  + L+RP   NAMN     +     ++   D   + V
Sbjct: 20  FQSMAPDHSYESLRVTSAQKHVLHVQLNRPNKRNAMNKVFWREMVECFNKISRDADCRAV 79
Query: 116 LIEGSGPRAFCAGMDIKGVVAEIQK------DRNTPLVPKVFTAEYSLICKISEYKKPYI 169
           +I G+G + F AG+D+  + ++I +       R +  +  + T        I    KP I
Sbjct: 80  VISGAG-KMFTAGIDLMDMASDILQPKGDDVARISWYLRDIITRYQETFNVIERCPKPVI 138
Query: 170 SLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAY 229
           + + G  +G G+ +      R   +     + E  +GL  DVG      K  G  S+   
Sbjct: 139 AAVHGGCIGGGVDLVTACDIRYCAQDAFFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNE 198
Query: 230 LGMTGKRISTPSDALFAGLGTDYVP 254
           L  T +++    +AL +GL +   P
Sbjct: 199 LAFTARKM-MADEALGSGLVSRVFP 222

>pdb|2PPY|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From Geobacillus Kaustophilus Hta426 Length = 265

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 19/188 (10%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A I L   K+ N+ +L+   ++ + +D+   DP +K V++    P+ F AG DI  +
Sbjct: 17  DGIAEIHLHINKS-NSYDLEFYKEFNAAIDDIRFDPDIKVVIVXSDVPKFFSAGADINFL 75
Query: 135 VAEIQKDRNTPLVPKVFTAEYSLIC-----KISEYKKPYISLMDGVTMGFGIGISGHGRY 189
            +   +          F  ++ L C     KI+   + YI+ ++G T+G G+  +     
Sbjct: 76  RSADPR----------FKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEXALACDL 125
Query: 190 RIV-TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGL 248
           R    E   + +PE  +G+    G +   A+   G S      +TG+ I TP +AL  GL
Sbjct: 126 RFXGDEAGKIGLPEVSLGVLAGTGGTQRLARLI-GYSRALDXNITGETI-TPQEALEIGL 183
Query: 249 GTDYVPSG 256
                P  
Sbjct: 184 VNRVFPQA 191

>pdb|1UIY|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Thermus Thermophilus Hb8 Length = 253

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 12/196 (6%)
Query: 71  NVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMD 130
            V    VAV+ L+ P+  N ++ +  +     LD+ E+DP V+ V++ G G +AF AG D
Sbjct: 3   QVEKGHVAVVFLNDPERRNPLSPEXALSLLQALDDLEADPGVRAVVLTGRG-KAFSAGAD 61
Query: 131 IKGV--VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGR 188
           +  +  V E+  + N     +   +   L  ++  Y KP ++ ++G  +  G G++    
Sbjct: 62  LAFLERVTELGAEENY----RHSLSLXRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACD 117
Query: 189 YRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGL 248
             +  E+  L   E  IG F     S I  +  G  +    L +TG R+    +A   GL
Sbjct: 118 LVVXDEEARLGYTEVKIG-FVAALVSVILVRAVGEKAAKDLL-LTG-RLVEAREAKALGL 174
Query: 249 GTDYVPSGNLGSLKEA 264
                P G   +L+EA
Sbjct: 175 VNRIAPPGK--ALEEA 188

>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) Complexed With 2trans-hexenoyl-coa Length = 742

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 13/136 (9%)
Query: 74  PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKG 133
           P+ +A+I L  P  +NA++  +  + ++ L +  SD  VK ++I G+    FCAG DI G
Sbjct: 28  PHSLAMIRLCNP-PVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGN-FCAGADIHG 85
Query: 134 VVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
             A           P +  A  SL+ +I  Y+KP ++ + GV +G G+ ++    YRI  
Sbjct: 86  FSA---------FTPGL--ALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIAN 134
Query: 194 EKTLLAMPENGIGLFP 209
            K  + +P   +G+ P
Sbjct: 135 AKARVGLPAVTLGILP 150

>pdb|2J5I|A Chain A, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 10/213 (4%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A + L+RP+  NAM+  ++ +    L+  E DP    +++ G+G  A+ AGMD+K  
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEY 75
Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICK--ISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
             E+  D    ++ +    E S      +  Y KP I++++G   G G          I 
Sbjct: 76  FREV--DAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAIC 133
Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
            ++    + E   G+ P    S   A   G      Y+ MTGK       A   GL  + 
Sbjct: 134 ADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYI-MTGKTFGGQKAAEM-GLVNES 191
Query: 253 VPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 285
           VP   L  L+E  + +  +      +V   AK+
Sbjct: 192 VP---LAQLREVTIELARNLLEKNPVVLRAAKH 221

>pdb|2VSU|A Chain A, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism. Length = 276

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 10/213 (4%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A + L+RP+  NAM+  ++ +    L+  E DP    +++ G+G  A+ AGMD+K  
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEY 75
Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICK--ISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
             E+  D    ++ +    E S      +  Y KP I++++G   G G          I 
Sbjct: 76  FREV--DAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAIC 133
Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
            ++    + E   G+ P    S   A   G      Y+ MTGK       A   GL  + 
Sbjct: 134 ADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYI-MTGKTFGGQKAAEM-GLVNES 191
Query: 253 VPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 285
           VP   L  L+E  + +  +      +V   AK+
Sbjct: 192 VP---LAQLREVTIELARNLLEKNPVVLRAAKH 221

>pdb|2VSU|E Chain E, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 10/213 (4%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A + L+RP+  NAM+  ++ +    L+  E DP    +++ G+G  A+ AGMD+K  
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEY 75
Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICK--ISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
             E+  D    ++ +    E S      +  Y KP I++++G   G G          I 
Sbjct: 76  FREV--DAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAIC 133
Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
            ++    + E   G+ P    S   A   G      Y+ MTGK       A   GL  + 
Sbjct: 134 ADEATFGLSEINYGIPPGNLVSKAMADTVGHRQSLYYI-MTGKTFGGQKAAEM-GLVNES 191
Query: 253 VPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 285
           VP   L  L+E  + +  +      +V   AK+
Sbjct: 192 VP---LAQLREVTIELARNLLEKNPVVLRAAKH 221

>pdb|2VSU|C Chain C, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 275

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 10/213 (4%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A + L+RP+  NAM+  ++ +    L+  E DP    +++ G+G  A+ AGMD+K  
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEY 75
Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICK--ISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
             E+  D    ++ +    E S      +  Y KP I++++G   G G          I 
Sbjct: 76  FREV--DAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAIC 133
Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
            ++    + E   G+ P    S   A   G      Y+ MTGK       A   GL  + 
Sbjct: 134 ADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYI-MTGKTFGGQKAAEM-GLVNES 191
Query: 253 VPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 285
           VP   L  L+E  + +  +      +V   AK+
Sbjct: 192 VP---LAQLREVTIELARNLLEKNPVVLRAAKH 221

>pdb|2J5I|I Chain I, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 10/213 (4%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A + L+RP+  NAM+  ++ +    L+  E DP    +++ G+G  A+ AGMD+K  
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEY 75
Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICK--ISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
             E+  D    ++ +    E S      +  Y KP I++++G   G G          I 
Sbjct: 76  FREV--DAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAIC 133
Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
            ++    + E   G+ P    S   A   G      Y+ MTGK       A   GL  + 
Sbjct: 134 ADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYI-MTGKTFGGQKAAEM-GLVNES 191
Query: 253 VPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 285
           VP   L  L+E  + +  +      +V   AK+
Sbjct: 192 VP---LAQLREVTIELARNLLEKNPVVLRAAKH 221

>pdb|2VSU|F Chain F, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 10/213 (4%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A + L+RP+  NAM+  ++ +    L+  E DP    +++ G+G  A+ AGMD+K  
Sbjct: 17  DGIAFVILNRPERRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEY 75
Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICK--ISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
             E+  D    ++ +    E S      +  Y KP I++++G   G G          I 
Sbjct: 76  FREV--DAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAIC 133
Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
            ++    + E   G+ P    S   A   G      Y+ MTGK       A   GL  + 
Sbjct: 134 ADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYI-MTGKTFGGQKAAEM-GLVNES 191
Query: 253 VPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 285
           VP   L  L+E  + +  +      +V   AK+
Sbjct: 192 VP---LAQLREVTIELARNLLEKNPVVLRAAKH 221

>pdb|2J5I|B Chain B, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 10/213 (4%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A + L+RP+  NAM+  ++ +    L+  E DP    +++ G+G  A+ AGMD+K  
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEY 75
Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICK--ISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
             E+  D    ++ +    E S      +  Y KP I++++G   G G          I 
Sbjct: 76  FREV--DAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAIC 133
Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
            ++    + E   G+ P    S   A   G      Y+ MTGK       A   GL  + 
Sbjct: 134 ADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYI-MTGKTFGGQKAAEM-GLVNES 191
Query: 253 VPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 285
           VP   L  L+E  + +  +      +V   AK+
Sbjct: 192 VP---LAQLREVTIELARNLLEKNPVVLRAAKH 221

>pdb|2VSS|E Chain E, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 10/213 (4%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A + L+RP+  NAM+  ++ +    L+  E DP    +++ G+G  A+ AGMD+K  
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEY 75
Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICK--ISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
             E+  D    ++ +    E S      +  Y KP I++++G   G G          I 
Sbjct: 76  FREV--DAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAIC 133
Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
            ++    + E   G+ P    S   A   G      Y+ MTGK       A   GL  + 
Sbjct: 134 ADEATFGLSEINYGIPPGNLVSKAMADTVGHRQSLYYI-MTGKTFGGQKAAEM-GLVNES 191
Query: 253 VPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 285
           VP   L  L+E  + +  +      +V   AK+
Sbjct: 192 VP---LAQLREVTIELARNLLEKNPVVLRAAKH 221

>pdb|2VSS|F Chain F, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 10/213 (4%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A + L+RP+  NAM+  ++ +    L+  E DP    +++ G+G  A+ AGMD+K  
Sbjct: 17  DGIAFVILNRPERRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEY 75
Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICK--ISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
             E+  D    ++ +    E S      +  Y KP I++++G   G G          I 
Sbjct: 76  FREV--DAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAIC 133
Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
            ++    + E   G+ P    S   A   G      Y+ MTGK       A   GL  + 
Sbjct: 134 ADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYI-MTGKTFGGQKAAEM-GLVNES 191
Query: 253 VPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 285
           VP   L  L+E  + +  +      +V   AK+
Sbjct: 192 VP---LAQLREVTIELARNLLEKNPVVLRAAKH 221

>pdb|1DCI|A Chain A, Dienoyl-Coa Isomerase Length = 275

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 105/250 (42%), Gaps = 35/250 (14%)
Query: 80  ITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQ 139
           + L+RP+  NAMN     +      +   D   + V++ G+G + F +G+D+  + ++I 
Sbjct: 17  VQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAG-KMFTSGIDLMDMASDIL 75
Query: 140 KDRNTPLVPKVFTAEYSLICKISEYKK----------PYISLMDGVTMGFGIGISGHGRY 189
           +    P    V    + L   IS Y+K          P I+ + G  +G G+ +      
Sbjct: 76  Q----PPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDI 131
Query: 190 RIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLG 249
           R  T+     + E  +GL  DVG      K  G  S+   L  T +++    +AL +GL 
Sbjct: 132 RYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKM-MADEALDSGLV 190
Query: 250 TDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSE 309
           +   P       K+ +L   F         AL A  SS    ++P+ +   +I   +S +
Sbjct: 191 SRVFPD------KDVMLNAAF---------ALAADISS----KSPVAVQGSKINLIYSRD 231
Query: 310 KSVRQIIEEL 319
            SV + ++ +
Sbjct: 232 HSVDESLDYM 241

>pdb|3OC7|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase From Mycobacterium Avium Length = 267

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           VA +TL+ P   NA++  +  +    L +  SDP V+ V++  +G   FCAG D+    +
Sbjct: 21  VARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGG-TFCAGADLSEAGS 79
Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
                    +  +      +L+  I E + P I+ +DG     G G+ G     +   ++
Sbjct: 80  GGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRS 139
Query: 197 LLAMPENGIGLFPDV 211
             A+ E  IG+ P +
Sbjct: 140 SFALTEARIGVAPAI 154

>pdb|2FW2|A Chain A, Catalytic Domain Of Cdy Length = 260

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 75/180 (41%), Gaps = 5/180 (2%)
Query: 79  VITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEI 138
           ++   R    NA+N ++  +  + L+   +D   K VL   +G   FC G+D    V  +
Sbjct: 17  IVLSTRSTEKNALNTEVIKEMVNALNSAAADDS-KLVLFSAAGS-VFCCGLDFGYFVRHL 74
Query: 139 QKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL 198
           + DRNT  +  V T + + +    ++KKP +  ++G  +G G  I          EK   
Sbjct: 75  RNDRNTASLEMVDTIK-NFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWF 133
Query: 199 AMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNL 258
             P    G  PD   S    K  G  S    L + G+++ T  +A   GL +    +G  
Sbjct: 134 QTPYTTFGQSPDGCSSITFPKMMGKASANEML-IAGRKL-TAREACAKGLVSQVFLTGTF 191

>pdb|1XX4|A Chain A, Crystal Structure Of Rat Mitochondrial 3,2-Enoyl-Coa Length = 261

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 117/257 (45%), Gaps = 20/257 (7%)
Query: 76  GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           G+AV+    P  +N+++L+   ++   L++ E+D  ++ V++    P  F AG+D+  + 
Sbjct: 15  GIAVMKFKNP-PVNSLSLEFLTEFVISLEKLENDKSIRGVILTSERPGIFSAGLDLMEMY 73
Query: 136 AEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE- 194
                 RN     + + A   L  ++       IS ++G +   G  ++    YRI+ + 
Sbjct: 74  G-----RNPAHYAEYWKAVQELWLRLYLSNLTLISAINGASPAGGCLMALTCDYRIMADN 128
Query: 195 -KTLLAMPENGIGLFPDVGF--SYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 251
            K  + + E+ +G+        +Y+   G         LG     +  P++AL  GL  +
Sbjct: 129 SKYTIGLNESLLGIVAPFWLKDNYVNTIGHRAAERALQLGT----LFPPAEALKVGLVDE 184
Query: 252 YVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSD---PEGEAPLKLLLPQITSCF 306
            VP   + S   +++A  F+   H  Q   +++ K ++D    + EA ++     I+   
Sbjct: 185 VVPEDQVHSKARSVMAKWFTIPDHSRQLTKSMMRKATADNLIKQREADIQNFTSFISRD- 243
Query: 307 SSEKSVRQIIEELKKHQ 323
           S +KS+   +E+LK+ +
Sbjct: 244 SIQKSLHVYLEKLKQKK 260

>pdb|3L3S|A Chain A, Crystal Structure Of An Enoyl-Coa HydrotaseISOMERASE FAMILY Protein From Silicibacter Pomeroyi Length = 263

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query: 65  EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRA 124
           ++ + G V   GV  +TL R  A + ++          L     D  V  ++I G G R 
Sbjct: 5   QDGLLGEVLSEGVLTLTLGRAPA-HPLSRAXIAALHDALRRAXGDDHVHVLVIHGPG-RI 62
Query: 125 FCAGMDIKGVVAEIQKDRNTP-----LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGF 179
           FCAG D+K    EI + R  P      V  +F A  +L   ++   KP I+L++G+    
Sbjct: 63  FCAGHDLK----EIGRHRADPDEGRAFVTDLFEACSALXLDLAHCPKPTIALVEGIATAA 118
Query: 180 GI 181
           G+
Sbjct: 119 GL 120

>pdb|3HIN|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Rhodopseudomonas Palustris Cga009 Length = 275

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 19/150 (12%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVA 136
           V  I L+RPK  NA+N  +    K  L +     +++ V+I G G   F AG+D+  +  
Sbjct: 26  VLTIGLNRPKKRNALNDGLMAALKDCLTDIPD--QIRAVVIHGIGDH-FSAGLDLSELR- 81
Query: 137 EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT 196
             ++D    LV       + +  KI   + P I+ + G  +G G+ ++     R+     
Sbjct: 82  --ERDATEGLVHS--QTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASA 137
Query: 197 LLAMPENGIGLFPDVGFSYIAAKGPGGGSV 226
             A+PE   G+F  VG         GGGSV
Sbjct: 138 YYALPEGSRGIF--VG---------GGGSV 156

>pdb|3G64|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Streptomyces Coelicolor A3(2) Length = 279

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVA +TL RP  LNA+  +     +  L E      V+ +++ G G R FC+G D+  +
Sbjct: 25  DGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEG-RGFCSGGDVDEI 83
Query: 135 V 135
           +
Sbjct: 84  I 84

>pdb|2IEX|A Chain A, Crystal Structure Of Dihydroxynapthoic Acid Synthetase (Gk2873) From Geobacillus Kaustophilus Hta426 Length = 272

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/260 (21%), Positives = 108/260 (41%), Gaps = 29/260 (11%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMD--IK 132
           NG+A IT++RP+  NA       +      +   D  +  +++ G+G +AFC+G D  ++
Sbjct: 20  NGIAKITINRPEVHNAFRPKTVNEMIDAFTKARDDSNIGVIILTGAGGKAFCSGGDQKVR 79
Query: 133 GVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
           G    + +D     +P++   +   + ++    KP I+++ G  +G G  +       I 
Sbjct: 80  GHGGYVGEDE----IPRLNVLDLQRLIRV--IPKPVIAMVAGYAIGGGHVLHVVCDLTIA 133
Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK-------RISTPSDALF 245
            +  +       +G F D G+        G G +   +G           R  T  +AL 
Sbjct: 134 ADNAIFGQTGPKVGSF-DGGY--------GAGYLARIVGHKKAREIWYLCRQYTAQEALE 184
Query: 246 AGLGTDYVPSGNLGSLKEALL--AVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT 303
            GL    VP   L  L+E  +  A    E     I  L A +++D +G A ++ L    T
Sbjct: 185 MGLVNKVVP---LEQLEEETVKWAQEILEKSPTAIRFLKAAFNADSDGLAGIQQLAGDAT 241
Query: 304 SCFSSEKSVRQIIEELKKHQ 323
             F + +  ++ +   K+ +
Sbjct: 242 LLFYTTEEAKEGMRAFKEKR 261

>pdb|2FBM|A Chain A, Acetyltransferase Domain Of Cdy1 Length = 291

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 5/180 (2%)
Query: 79  VITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEI 138
           ++   R    NA+N ++  +  + L+   +D   K VL   +G   FC G+D    V  +
Sbjct: 36  IVLSTRSTEKNALNTEVIKEIVNALNSAAADDS-KLVLFSAAGS-VFCCGLDFGYFVKHL 93
Query: 139 QKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL 198
           + +RNT  +  V T + + +    ++KKP +  ++G  +G G  I          EK   
Sbjct: 94  RNNRNTASLEMVDTIK-NFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWF 152
Query: 199 AMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNL 258
             P    G  PD   S    K  G  S    L + G+++ T  +A   GL +    +G  
Sbjct: 153 QTPYTTFGQSPDGCSSITFPKMMGKASANEML-IAGRKL-TAREACAKGLVSQVFLTGTF 210

>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2 Length = 725

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 6/139 (4%)
Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVAVITL  P  +N+++ D+    KS  +E  S   VK ++I G+  R F  G DI G 
Sbjct: 16  DGVAVITLINP-PVNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGR-FSGGFDISGF 73
Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEY-KKPYISLMDGVTMGFGIGISGHGRYRIVT 193
             E+QK       PK       +I  + E  +KP ++ +DG+ +G G+ ++     RI  
Sbjct: 74  -GEMQKGNVKE--PKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISA 130
Query: 194 EKTLLAMPENGIGLFPDVG 212
               L +PE  +G+ P  G
Sbjct: 131 PAAQLGLPELQLGVIPGFG 149

>pdb|3TRR|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 256

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV 135
           V +IT++RP A NA+N  +     +  D+ +S   +   +I G+G   FCAGMD+K  V
Sbjct: 17  VLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGN-FCAGMDLKAFV 74

>pdb|3QXI|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa1 From Mycobacterium Marinum Length = 265

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
           + +IT++RPKA N++N  +       +D  ++D  +   ++ G+G  +FCAGMD+K
Sbjct: 25  ILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAG-GSFCAGMDLK 79

>pdb|3NJB|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis, Iodide Soak Length = 333

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 77  VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDI 131
           VA IT +RP+  NA+  D  ++  + ++  + DP V  +L+ G G   FCAG D+
Sbjct: 45  VARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRG-EGFCAGFDL 98

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	405
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	1e-120
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	1e-119
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	6e-31
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	1e-28
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	1e-28
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	5e-28
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	5e-28
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	8e-28
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 11251J, struct	2e-27
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	3e-27
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	4e-27
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	7e-27
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	1e-26
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	4e-26
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	1e-25
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	1e-25
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	1e-25
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	2e-25
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	2e-25
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	4e-25
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	6e-25
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	2e-24
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	4e-24
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	5e-24
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	1e-23
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	1e-23
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	2e-23
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	2e-23
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	2e-23
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	3e-23
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	3e-23
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	3e-23
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	1e-22
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	1e-22
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	1e-22
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	1e-22
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	1e-22
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	1e-22
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	2e-22
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	3e-22
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	4e-22
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	7e-22
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	7e-22
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	8e-22
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	8e-22
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	1e-21
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	2e-21
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	2e-21
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	3e-21
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	3e-21
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	4e-21
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	4e-21
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	5e-21
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	1e-20
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	2e-20
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	3e-20
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	4e-20
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	4e-20
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	6e-20
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	8e-20
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	8e-20
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	9e-20
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	1e-19
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	2e-19
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	4e-19
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	5e-19
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	8e-19
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	2e-18
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	4e-18
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	1e-17
3t3w_A	279	Probable enoyl-COA hydratase; ssgcid, structural g	2e-17
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	1e-16
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	8e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} Length = 407

 Score =  353 bits (907), Expect = e-120
 Identities = 103/405 (25%), Positives = 172/405 (42%), Gaps = 43/405 (10%)

Query: 33  HQSTCRFIRLSFCNPQTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMN 92
           H  +     L F    T+   +   + A                V V+TL+  KALNA++
Sbjct: 8   HHHSSGRENLYFQGHMTNLVDKAAHSFATQNVVFQTLATASGKLVGVVTLNVEKALNALD 67

Query: 93  LDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVV--AEIQKDRNTPLVPKV 150
           LDM       L+ W+ DP + CV+++GSG +AFCAG D++ +   +   K + T +    
Sbjct: 68  LDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQVTEVAKVF 127

Query: 151 FTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPD 210
           F  EY L   +  Y KP +   DG+ MG G+G+     +++VTE + +AMPE  IGL+PD
Sbjct: 128 FEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPD 187

Query: 211 VGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTF 270
           VG SY   + PG   +G +LG+T   ++  +DA + GL   Y+   +   + +A+  + +
Sbjct: 188 VGGSYFLNRMPGK--MGLFLGLTAYHMN-AADACYVGLADHYLNRDDKELMFDAMATLDW 244

Query: 271 SEDP---HQDIVALLAKYSSD---PEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQS 324
           S+ P   HQ +  ++ + S+    P+G++ L      I    +   S+  I+  +    +
Sbjct: 245 SDSPALNHQRLDTMINELSNQVDIPKGDSVLAESQEMIDRLMAG--SLTDIVTRMSTLST 302

Query: 325 SAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVA--------------SAHGKTDNEL 370
                   W  +A   M  G+P S  L                       S +     + 
Sbjct: 303 DEA-----WLSKACATMLAGSPISWHLAYIQTQLGTKLSLAQCFKWELTVSVNVCAKGDF 357

Query: 371 S-----------KNPKWNPASLEEVNQSEVEALFEPLGTGVEELK 404
                       K PKW  A ++ V  S +E +          L 
Sbjct: 358 CEGVRALLIDKDKQPKWQFADVQSVPNSVIEDILTSPWGEEHPLS 402

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} Length = 363

 Score =  349 bits (898), Expect = e-119
 Identities = 118/361 (32%), Positives = 183/361 (50%), Gaps = 50/361 (13%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
               VITL+RPK LNA+ L+M  +    L +WE DP    ++I+G+G +AFCAG DI+ +
Sbjct: 14  GCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVI 73

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
               +      + P  F  EY L   +   +KPY++L+ G+TMG G+G+S HG++R+ TE
Sbjct: 74  SEAEKAK--QKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATE 131

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVP 254
           K L AMPE  IGLFPDVG  Y   +  G   +G +L +TG R+    D   AG+ T +V 
Sbjct: 132 KCLFAMPETAIGLFPDVGGGYFLPRLQGK--LGYFLALTGFRLK-GRDVYRAGIATHFVD 188

Query: 255 SGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDP----EGEAPLKLLLPQITSCFSSEK 310
           S  L  L+E LLA+       ++I ++L  Y ++     +    L+  + +I SCFS+  
Sbjct: 189 SEKLAMLEEDLLALKSPS--KENIASVLENYHTESKIDRDKSFILEEHMDKINSCFSAN- 245

Query: 311 SVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKT---- 366
           +V +IIE L++  S        +A E L+ + K +P SL +T +   +      KT    
Sbjct: 246 TVEEIIENLQQDGS-------SFALEQLKVINKMSPTSLKITLRQLME---GSSKTLQEV 295

Query: 367 -DNEL-----------------------SKNPKWNPASLEEVNQSEVEALFEPLGTGVEE 402
              E                         ++PKW PA L+EV + ++   F+ LG+   +
Sbjct: 296 LTMEYRLSQACMRGHDFHEGVRAVLIDKDQSPKWKPADLKEVTEEDLNNHFKSLGSSDLK 355

Query: 403 L 403
            
Sbjct: 356 F 356

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298

 Score =  118 bits (299), Expect = 6e-31
 Identities = 52/227 (22%), Positives = 91/227 (40%), Gaps = 18/227 (7%)

Query: 47  PQTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEW 106
                 ++   +M+AA A++ V     P GVA+IT +R   LNA   D+   + + +D  
Sbjct: 10  GTLEAQTQGPGSMSAADAQDAVLYEATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRA 69

Query: 107 ESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS---LICKISE 163
           E+DP ++ +++ G G R FCAG  +    A    D+          A+         ++ 
Sbjct: 70  EADPGIRVIVLTGRG-RGFCAGAYLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTM 128

Query: 164 YKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY-----IAA 218
            +KP I+ ++G  +G G+  +     R        A      GL  + G S+        
Sbjct: 129 LRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLT-- 186

Query: 219 KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL 265
                 +V   L ++G+      +A   GL  + V    L  +  AL
Sbjct: 187 ----SWAVALDLLLSGRTFL-AEEAAQLGLVKEVVTPEQL--MPRAL 226

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255

 Score =  111 bits (281), Expect = 1e-28
 Identities = 50/219 (22%), Positives = 85/219 (38%), Gaps = 26/219 (11%)

Query: 61  AAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS 120
             G+   +        V  I LDRP+ LNA++  M  +    + + E+D  V+ VL+ G+
Sbjct: 1   GPGSMNGISVEHD-GAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGA 59

Query: 121 GPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFG 180
           G RAFC+G D+ G       D    +V             I+   KP I+ + G  +GFG
Sbjct: 60  G-RAFCSGGDLTGGDTAGAADAANRVVR-----------AITSLPKPVIAGVHGAAVGFG 107

Query: 181 IGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAY----LGMTGKR 236
             ++      +    +   +    +GL PD G S +         +G      + MT ++
Sbjct: 108 CSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPL-----LIGRARTSRMAMTAEK 162

Query: 237 ISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDP 274
           IS    A   G+ +    +           +  + S  P
Sbjct: 163 ISAA-TAFEWGMISHITSADEY--ESVLTDVLRSVSGGP 198

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256

 Score =  111 bits (281), Expect = 1e-28
 Identities = 60/205 (29%), Positives = 90/205 (43%), Gaps = 18/205 (8%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           N V  +TL+RP+ALNA N  +       L +   DP+V  VL+ GSG R F AG D+   
Sbjct: 14  NRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSG-RGFSAGTDLA-- 70

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             E+Q     P   +       LI  ++ + KP I  ++G+ +G G  I G+     ++ 
Sbjct: 71  --EMQARITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSS 128

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG----AYLGMTGKRISTPSDALFAGLGT 250
              L  P   +G+ P+   SY+  +      VG    A+L M+ + I    +AL  GL  
Sbjct: 129 TARLKCPFTSLGVAPEAASSYLLPQ-----LVGRQNAAWLLMSSEWIDAE-EALRMGLVW 182

Query: 251 DYVPSGNLGSLKEAL-LAVTFSEDP 274
                  L  L EA   A   +  P
Sbjct: 183 RICSPEEL--LPEARRHAEILAAKP 205

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269

 Score =  110 bits (277), Expect = 5e-28
 Identities = 51/205 (24%), Positives = 85/205 (41%), Gaps = 14/205 (6%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVA IT+  P+  NA+++    +    L+  E D  V  V+I G+   AFCAG  ++ +
Sbjct: 11  DGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAE-DAFCAGFYLREI 69

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             +                 + +I KI   K+P ++ ++GV  G G+GIS      I  +
Sbjct: 70  PLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICAD 129

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAY----LGMTGKRISTPSDALFAGLGT 250
                   + IG+  D   SY  A+      VG      L +T + +  P +A   GL +
Sbjct: 130 SAKFVCAWHTIGIGNDTATSYSLAR-----IVGMRRAMELMLTNRTLY-PEEAKDWGLVS 183

Query: 251 DYVPSGNLGSLKEAL-LAVTFSEDP 274
              P       + A  +A   +  P
Sbjct: 184 RVYPKDEF--REVAWKVARELAAAP 206

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257

 Score =  109 bits (275), Expect = 8e-28
 Identities = 59/206 (28%), Positives = 98/206 (47%), Gaps = 22/206 (10%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             VA +TL+RP  LNA    M+ +    L +  +DP V+CV+I G+G RAFCAG D+ GV
Sbjct: 11  GQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAG-RAFCAGEDLSGV 69

Query: 135 VAEIQKDRNTPLVPKVFTAEYS-LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
             E+           V  + Y+ ++  +   +KP ++ ++G   G G+ ++    +R+++
Sbjct: 70  TEEMDHGD-------VLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLS 122

Query: 194 EKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAY----LGMTGKRISTPSDALFAGLG 249
           EK   A     +GL PD G  Y   +      VG      L + G++++   +A   GL 
Sbjct: 123 EKASFAPAFIHVGLVPDAGHLYYLPR-----LVGRAKALELAVLGEKVTAE-EAAALGLA 176

Query: 250 TDYVPSGNLGSLKEAL-LAVTFSEDP 274
           T  +P  +    +E    A   S  P
Sbjct: 177 TKVIPLSDW--EEEVKQFAERLSAMP 200

>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263

 Score =  108 bits (272), Expect = 2e-27
 Identities = 34/204 (16%), Positives = 75/204 (36%), Gaps = 25/204 (12%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           N    ITLD P+  N ++ ++       +    ++  +  ++++      F +G  ++  
Sbjct: 12  NDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLED- 70

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
           +     D++   + +V       + +I    K  ++L++G   G G  +      RI   
Sbjct: 71  LLICASDQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALR 130

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAY----LGMTGKRISTPSDAL 244
           +       + +G+ PD            G S      +G      L + GK  ++  +AL
Sbjct: 131 RAKFLENFHKMGISPD-----------LGASYFLPRIIGYEQTMNLLLEGKLFTSE-EAL 178

Query: 245 FAGLGTDYVPSGNLGSLKEALLAV 268
             GL  +   +     L+E +   
Sbjct: 179 RLGLIQEICENKQE--LQERVKNY 200

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280

 Score =  108 bits (272), Expect = 3e-27
 Identities = 37/223 (16%), Positives = 66/223 (29%), Gaps = 25/223 (11%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
               +I L  P  LNA+  +  I     L+  + +  V   +I+ SG R F +G D KG+
Sbjct: 17  GPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSG-RFFSSGADFKGI 75

Query: 135 VAEIQKDRNTP------LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGR 188
                 D N         V         +     ++ K  I  ++G  +G    +     
Sbjct: 76  AKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCD 135

Query: 189 YRI-VTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG----AYLGMTGKRISTPSDA 243
               + +K  L  P   +GL  + G +            G        M  K        
Sbjct: 136 IVYSINDKVYLLYPFANLGLITEGGTTVSLPL-----KFGTNTTYECLMFNKPFK-YDIM 189

Query: 244 LFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYS 286
              G  +             +  A  F+    +++   +    
Sbjct: 190 CENGFISKNFNM-------PSSNAEAFNAKVLEELREKVKGLY 225

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279

 Score =  108 bits (271), Expect = 4e-27
 Identities = 55/230 (23%), Positives = 93/230 (40%), Gaps = 16/230 (6%)

Query: 51  GNSRTFATMAAAGAE-EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESD 109
           G+   F   AA   E   ++  +  +GVA +TL RP  LNA+  +     +  L E    
Sbjct: 1   GHMSPFTGSAAPTPEWRHLRVEIT-DGVATVTLARPDKLNALTFEAYADLRDLLAELSRR 59

Query: 110 PRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS-LICKISEYKKPY 168
             V+ +++ G G R FC+G D+  ++               F      ++  + E   P 
Sbjct: 60  RAVRALVLAGEG-RGFCSGGDVDEIIGATLSM--DTARLLDFNRMTGQVVRAVRECPFPV 116

Query: 169 ISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFP-DVGFSYIAAK--GPGGGS 225
           I+ + GV  G G  ++    +R+    T  A     +GL   D+G +Y+  +  G G   
Sbjct: 117 IAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAAYLLPRVVGLG--- 173

Query: 226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDP 274
               L M G  +  P +A   GL ++    G     + A  LA   ++ P
Sbjct: 174 HATRLLMLGDTVRAP-EAERIGLISELTEEGRA--DEAARTLARRLADGP 220

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266

 Score =  107 bits (269), Expect = 7e-27
 Identities = 46/179 (25%), Positives = 73/179 (40%), Gaps = 16/179 (8%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
            GV  + ++RP+A NA+  ++ +     LDE + +  V+ V++ G+    F AG D+K  
Sbjct: 13  GGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAE-HDFTAGNDMK-- 69

Query: 135 VAEIQKDRNTPLVPKVFTAEY-SLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
             +       P            L+   +   KP I  + GV +G G+ I          
Sbjct: 70  --DFMGFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFAD 127

Query: 194 EKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG----AYLGMTGKRISTPSDALFAGL 248
              L  +P   +GL P+ G S +  K       G    A L  T K+ +    AL AGL
Sbjct: 128 NTALFQIPFVSLGLSPEGGASQLLVK-----QAGYHKAAELLFTAKKFNAE-TALQAGL 180

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290

 Score =  107 bits (269), Expect = 1e-26
 Identities = 55/273 (20%), Positives = 104/273 (38%), Gaps = 37/273 (13%)

Query: 57  ATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVL 116
           A     G+  FV  +     +A++TL+RP+ +NAM  D+ + +K  L +   D  V+ V+
Sbjct: 14  AQTQGPGSMSFVLVDRPRPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVV 73

Query: 117 IEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEY--SLICKISEYKKPYISLMDG 174
           I G+G + FC+G D K           T     + + E    +I  +    +P I+ ++G
Sbjct: 74  ITGAG-KGFCSGADQKSAGPIPHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAING 132

Query: 175 VTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGA 228
             +G G+ ++     R+ ++           GL               G S      +G 
Sbjct: 133 AAIGGGLCLALACDVRVASQDAYFRAAGINNGLTA----------SELGLSYLLPRAIGT 182

Query: 229 Y----LGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLA 283
                + +TG+ +    +A   GL +  V S +L  L+E   +    +          L 
Sbjct: 183 SRASDIMLTGRDVDAD-EAERIGLVSRKVASESL--LEECYAIGERIAGFSR--PGIELT 237

Query: 284 KYS-------SDPEGEAPLKLLLPQITSCFSSE 309
           K +       +  E     + L  Q+     ++
Sbjct: 238 KRTIWSGLDAASLESHMHQEGLG-QLYVRLLTD 269

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250

 Score =  104 bits (262), Expect = 4e-26
 Identities = 47/232 (20%), Positives = 76/232 (32%), Gaps = 32/232 (13%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + V VITLD P   N  +  ++   K  L    +D  V+ V++ G   R+F AG D   V
Sbjct: 8   DEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEV 67

Query: 135 VAEIQKDRNTPLVPKVFTAEY-SLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
                K  +     + +      L   +    KP I+ +DG  +G G   +     R++ 
Sbjct: 68  -----KQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMA 122

Query: 194 EKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS-----VGAYLGM----TGKRISTPSDAL 244
                 MPE   G+               G +      G           + +  P   +
Sbjct: 123 STANFVMPELKHGIGCS-----------VGAAILGFTHGFSTMQEIIYQCQSLDAP-RCV 170

Query: 245 FAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLAKYSSDPEGEAPL 295
              L    V S  L  L  A+  A   +  P      +  K + +      L
Sbjct: 171 DYRLVNQVVESSAL--LDAAITQAHVMASYPA--SAFINTKRAVNKPFIHLL 218

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280

 Score =  104 bits (261), Expect = 1e-25
 Identities = 38/205 (18%), Positives = 77/205 (37%), Gaps = 16/205 (7%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+  I  +RPK  NA+N +M  +    L     D  +   ++ G+G   + +G D+   
Sbjct: 34  DGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNG-DYYSSGNDLTNF 91

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
                                  +    ++ KP I++++G  +G  + + G       ++
Sbjct: 92  TDIPPGGVEEKA-KNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASD 150

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG----AYLGMTGKRISTPSDALFAGLGT 250
           +     P + +G  P+   SY   K      +       + + GK+++   +A   GL T
Sbjct: 151 RATFHTPFSHLGQSPEGCSSYTFPK-----IMSPAKATEMLIFGKKLT-AGEACAQGLVT 204

Query: 251 DYVPSGNLGSLKEAL-LAVTFSEDP 274
           +  P       KE       F++ P
Sbjct: 205 EVFPDSTF--QKEVWTRLKAFAKLP 227

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264

 Score =  103 bits (260), Expect = 1e-25
 Identities = 43/223 (19%), Positives = 82/223 (36%), Gaps = 21/223 (9%)

Query: 59  MAAAGAE-EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLI 117
           +A+  A    +       GV  IT  R + LNAM   +         + E+   V+ VL+
Sbjct: 2   LASLEARYPGLAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLL 60

Query: 118 EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS-LICKISEYKKPYISLMDGVT 176
            G G   F AG         I++ R +         E   L+     + +P ++ ++ V 
Sbjct: 61  RGEG-GVFSAGGSFG----LIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVA 115

Query: 177 MGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG----AYLGM 232
           +G G+ ++      +V + T L      +G+        +         VG     Y  +
Sbjct: 116 VGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPL-----LVGMAKAKYHLL 170

Query: 233 TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDP 274
             + ++   +A   GL    V    +   ++AL +A   ++ P
Sbjct: 171 LNEPLTGE-EAERLGLVALAVEDEKV--YEKALEVAERLAQGP 210

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265

 Score =  103 bits (260), Expect = 1e-25
 Identities = 49/193 (25%), Positives = 87/193 (45%), Gaps = 15/193 (7%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVAV+TL  P   N+  +++  +  +     + DP V+ +++ G+   AFC+G  I   
Sbjct: 15  DGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAP-PAFCSGAQIS-- 71

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
                +    P  P    +         E + P I+ ++G  +G G+ ++ H   RI+ E
Sbjct: 72  --AAAETFAAPRNPDFSASPVQP--AAFELRTPVIAAVNGHAIGIGMTLALHADIRILAE 127

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAK--GPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
           +   A+P+   G+ PD    +   +  G    +V A L +TG   S    A+  GL    
Sbjct: 128 EGRYAIPQVRFGVAPDALAHWTLPRLVGT---AVAAELLLTGASFS-AQRAVETGLANRC 183

Query: 253 VPSGNLGSLKEAL 265
           +P+G +  L  AL
Sbjct: 184 LPAGKV--LGAAL 194

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286

 Score =  103 bits (260), Expect = 2e-25
 Identities = 48/215 (22%), Positives = 79/215 (36%), Gaps = 16/215 (7%)

Query: 48  QTSGNSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWE 107
              G          + +E  +  +    GV  +TL+RP+A NA++  M            
Sbjct: 7   HHMGTLEAQTQGPGSMSEPLLLQDRDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLA 66

Query: 108 SDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP 167
            D  V+ V++  SG  AFCAG D+K    E++ + +     K+F     ++  I     P
Sbjct: 67  EDESVRAVVLAASGK-AFCAGHDLK----EMRAEPSREYYEKLFARCTDVMLAIQRLPAP 121

Query: 168 YISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG 227
            I+ + G+    G  +       + T     A+    +GLF       ++        VG
Sbjct: 122 VIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLFCSTPGVALSRN------VG 175

Query: 228 AYLGM----TGKRISTPSDALFAGLGTDYVPSGNL 258
                    TG+ +S   DA   GL    V    L
Sbjct: 176 RKAAFEMLVTGEFVS-ADDAKGLGLVNRVVAPKAL 209

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263

 Score =  103 bits (258), Expect = 2e-25
 Identities = 44/193 (22%), Positives = 70/193 (36%), Gaps = 10/193 (5%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
            GV  +TL R  A + ++  M       L     D  V  ++I G G R FCAG D+K +
Sbjct: 15  EGVLTLTLGRAPA-HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPG-RIFCAGHDLKEI 72

Query: 135 VA-EIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
                  D     V  +F A  +L+  ++   KP I+L++G+    G+ +         +
Sbjct: 73  GRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYAS 132

Query: 194 EKTLLAMPENGIGLFPDVGFSYIA-AKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 252
                 +P    G F       ++   G         + +TG        AL AGL    
Sbjct: 133 PAARFCLPGVQNGGFCTTPAVAVSRVIGRR---AVTEMALTGATYD-ADWALAAGLINRI 188

Query: 253 VPSGNLGSLKEAL 265
           +P   L       
Sbjct: 189 LPEAAL--ATHVA 199

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272

 Score =  102 bits (256), Expect = 4e-25
 Identities = 41/215 (19%), Positives = 76/215 (35%), Gaps = 20/215 (9%)

Query: 66  EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAF 125
             ++     +GV  + LD P  LN++   M           + DP V+ VL+ G G +AF
Sbjct: 13  PSLRFEPGEHGVLNLVLDSP-GLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEG-KAF 70

Query: 126 CAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS-LICKISEYKKPYISLMDGVTMGFGIGIS 184
            +G   +     I +             E   L+  +    KP +S + G  +G G+ ++
Sbjct: 71  SSGGSFE----LIDETIGDYEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVA 126

Query: 185 GHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG----AYLGMTGKRISTP 240
                 + +    +      +G+      +           VG     Y  +T + +S  
Sbjct: 127 LLADISVASATAKIIDGHTKLGVAAGDHAAICWPL-----LVGMAKAKYYLLTCETLSGE 181

Query: 241 SDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDP 274
            +A   GL +  V    +  L  A  LA   ++  
Sbjct: 182 -EAERIGLVSTCVDDDEV--LPTATRLAENLAQGA 213

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243

 Score =  101 bits (253), Expect = 6e-25
 Identities = 35/211 (16%), Positives = 71/211 (33%), Gaps = 36/211 (17%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           NGV  IT+    + N  +  +    +        + + K V++ G G   F +G   + +
Sbjct: 11  NGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYG-NYFSSGASKEFL 69

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
                  +    V         L   I + + P I+ M G + G G+ +  +  + + ++
Sbjct: 70  -----IRKTRGEVEV-----LDLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQ 119

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VG----AYLGMTGKRISTPSDAL 244
           +++ A      G  P            G  S      +G      +  TG+      +  
Sbjct: 120 ESVYATNFMKYGFTPV-----------GATSLILREKLGSELAQEMIYTGENYRGK-ELA 167

Query: 245 FAGLGTDYVPSGNLGSLKEAL-LAVTFSEDP 274
             G+    V   ++  L  A  L    ++ P
Sbjct: 168 ERGIPFPVVSRQDV--LNYAQQLGQKIAKSP 196

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265

 Score = 99.9 bits (250), Expect = 2e-24
 Identities = 48/210 (22%), Positives = 92/210 (43%), Gaps = 29/210 (13%)

Query: 66  EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAF 125
           + +  +     V  I+L+R +  N+++L +  + ++ L +   +   + V++ G+G +AF
Sbjct: 8   QNISVDYATPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAF 67

Query: 126 CAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISG 185
           CAG D+K    E     N   V    +   + +  + +  +P I+ ++G+ +G G  +S 
Sbjct: 68  CAGADLK----ERA-GMNEEQVRHAVSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSL 122

Query: 186 HGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGK 235
              +RI  E   L + E  + + P  G          GG+      +G         TG+
Sbjct: 123 ACDFRIAAESASLGLTETTLAIIP--GA---------GGTQRLPRLIGVGRAKELIYTGR 171

Query: 236 RISTPSDALFAGLGTDYVPSGNLGSLKEAL 265
           RIS   +A   GL    VP   L   ++A+
Sbjct: 172 RISA-QEAKEYGLVEFVVPVHLL--EEKAI 198

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276

 Score = 99.6 bits (249), Expect = 4e-24
 Identities = 40/185 (21%), Positives = 72/185 (38%), Gaps = 28/185 (15%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             + +ITL+RP +LN++N D+ +           DP  +  +I G+G RAF AG D    
Sbjct: 36  GALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAG-RAFSAGGDFG-- 92

Query: 135 VAEIQKDRNTPLVPKVFTAEYS-LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
              +++      +      +   ++  ++  + P ++ ++G  +G G  +        + 
Sbjct: 93  --YLKELSADADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIA 150

Query: 194 EKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VG----AYLGMTGKRISTPSDA 243
           E   LA P   +GL               GG       +         +TG RIS    A
Sbjct: 151 ENAYLADPHVQVGLVAA-----------DGGPLTWPLHISLLLAKEYALTGTRISAQ-RA 198

Query: 244 LFAGL 248
           +  GL
Sbjct: 199 VELGL 203

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267

 Score = 99.2 bits (248), Expect = 5e-24
 Identities = 40/184 (21%), Positives = 70/184 (38%), Gaps = 16/184 (8%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             V  IT  RP+A N +N  +  +    L++ E+   V  V++EG     FC G D + +
Sbjct: 15  ASVCYITFHRPEANNTINDTLIEECLQVLNQCETST-VTVVVLEGLP-EVFCFGADFQEI 72

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             E+++ R      +       L  K+       IS + G     G+G        I  +
Sbjct: 73  YQEMKRGRKQASSQEPLYD---LWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQ 129

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGA----YLGMTGKRISTPSDALFAGLGT 250
               ++ E   GL+P     ++  +      +G     Y+ +  K IS   +A   GL  
Sbjct: 130 TASFSLSELLFGLYPACVLPFLIRR------IGRQKAHYMTLMTKPIS-VQEASEWGLID 182

Query: 251 DYVP 254
            +  
Sbjct: 183 AFDA 186

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256

 Score = 97.6 bits (244), Expect = 1e-23
 Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 39/201 (19%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + V  +TL+RP++ NA++ ++   +   L + ++D  V  V++ G+    FCAG+D+K  
Sbjct: 17  DRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGAD-PVFCAGLDLK-- 73

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             E+             T    +  K  +  KP I  ++G  +  G+ ++ +    I +E
Sbjct: 74  --ELGD----------TTELPDISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASE 121

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSDAL 244
               A     +GL P             G S      VG  L      TG  +S   DAL
Sbjct: 122 NAKFADTHARVGLMPT-----------WGLSVRLPQKVGVGLARRMSLTGDYLS-AQDAL 169

Query: 245 FAGLGTDYVPSGNLGSLKEAL 265
            AGL T+ V   +L  L  A 
Sbjct: 170 RAGLVTEVVAHDDL--LTAAR 188

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265

 Score = 98.0 bits (245), Expect = 1e-23
 Identities = 48/201 (23%), Positives = 76/201 (37%), Gaps = 29/201 (14%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             V VI L+RP   NA +  M  +    L E+E+D  ++  ++ G G   F AG+D+  V
Sbjct: 17  GYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEG-PLFTAGLDLASV 75

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
            AEIQ      L P+     + +     +  KP +  + G  +  GI ++      I  E
Sbjct: 76  AAEIQGG--ASLTPEGGINPWQV--DGRQLSKPLLVAVHGKVLTLGIELALAADIVIADE 131

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSDAL 244
               A  E   G++P            GG +       G    M    T        +A 
Sbjct: 132 TATFAQLEVNRGIYPF-----------GGATIRFPRTAGWGNAMRWMLTADTFDAV-EAH 179

Query: 245 FAGLGTDYVPSGNLGSLKEAL 265
             G+  + VP G    +  A+
Sbjct: 180 RIGIVQEIVPVGEH--VDTAI 198

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291

 Score = 98.5 bits (246), Expect = 2e-23
 Identities = 41/235 (17%), Positives = 83/235 (35%), Gaps = 20/235 (8%)

Query: 48  QTSGNSRTFATMAAAGAEEF--VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDE 105
            +  +    + +   G+  +  +          ++   R    NA+N ++  +  + L+ 
Sbjct: 3   SSHHHHHHSSGLVPRGSSTYRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNS 62

Query: 106 WESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEY-SLICKISEY 164
             +D   K VL   +G   FC G+D    V  ++ +RNT            + +    ++
Sbjct: 63  AAADD-SKLVLFSAAG-SVFCCGLDFGYFVKHLRNNRNTA--SLEMVDTIKNFVNTFIQF 118

Query: 165 KKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG 224
           KKP +  ++G  +G G  I          EK     P    G  PD   S    K     
Sbjct: 119 KKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPK----- 173

Query: 225 SVGAY----LGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDP 274
            +G      + + G++++   +A   GL +    +G     +E +      +   
Sbjct: 174 MMGKASANEMLIAGRKLTA-REACAKGLVSQVFLTGTF--TQEVMIQIKELASYN 225

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261

 Score = 97.6 bits (244), Expect = 2e-23
 Identities = 36/209 (17%), Positives = 72/209 (34%), Gaps = 18/209 (8%)

Query: 72  VHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDI 131
                  ++   +    N++N ++  + +S L    +D   K VL+   G   FC G+D 
Sbjct: 11  KQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADD-SKLVLLSAVG-SVFCCGLDF 68

Query: 132 KGVVAEIQKDRNTPLVPKVFTAEY-SLICKISEYKKPYISLMDGVTMGFGIGISGHGRYR 190
              +  +  D               + +    ++KKP I  ++G  +G G  I       
Sbjct: 69  IYFIRRLTDD--RKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVV 126

Query: 191 IVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG----AYLGMTGKRISTPSDALFA 246
              EK     P    G  PD   + +  K      +G      + ++G++++   +A   
Sbjct: 127 WANEKAWFQTPYTTFGQSPDGCSTVMFPK-----IMGGASANEMLLSGRKLTAQ-EACGK 180

Query: 247 GLGTDYVPSGNLGSLKEAL-LAVTFSEDP 274
           GL +     G     +E +      +   
Sbjct: 181 GLVSQVFWPGTF--TQEVMVRIKELASCN 207

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287

 Score = 97.7 bits (244), Expect = 2e-23
 Identities = 45/200 (22%), Positives = 82/200 (41%), Gaps = 28/200 (14%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+  I L  PK  N ++L M    +S +        +K ++I   GP  F +G D+K  
Sbjct: 41  DGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGP-VFSSGHDLK-- 97

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             E+ +++      +VF     ++  I  +  P I++++G+    G  +       + ++
Sbjct: 98  --ELTEEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASD 155

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGS-----VGAYLGM----TGKRISTPSDALF 245
           K+  A P   +GLF               G      V   + +    TG+ IS   +AL 
Sbjct: 156 KSSFATPGVNVGLFC--ST---------PGVALARAVPRKVALEMLFTGEPISA-QEALL 203

Query: 246 AGLGTDYVPSGNLGSLKEAL 265
            GL +  VP   L   +E +
Sbjct: 204 HGLLSKVVPEAEL--QEETM 221

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272

 Score = 97.2 bits (243), Expect = 3e-23
 Identities = 40/203 (19%), Positives = 84/203 (41%), Gaps = 29/203 (14%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
            G+ V+ ++R    N+++ ++       +D  +SD +V+ ++I    P  FCAG D+K  
Sbjct: 20  RGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLK-- 77

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             E     ++  V    +   ++I  I+    P I+ +DG+ +G G+ ++     R+   
Sbjct: 78  --ERA-KMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAAS 134

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSDAL 244
              + + E  + + P  G          GG+      +G  L      + + +    +A 
Sbjct: 135 SAKMGLVETKLAIIP--GG---------GGTQRLPRAIGMSLAKELIFSARVLDG-KEAK 182

Query: 245 FAGLGTDYVPSGNLGS--LKEAL 265
             GL +  +     G    ++AL
Sbjct: 183 AVGLISHVLEQNQEGDAAYRKAL 205

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263

 Score = 96.9 bits (242), Expect = 3e-23
 Identities = 34/209 (16%), Positives = 72/209 (34%), Gaps = 27/209 (12%)

Query: 66  EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAF 125
           E +  +   NG+  + +    +          ++     +   D   + V++ GSG  A+
Sbjct: 23  ENLHFHRDENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSG-DAW 81

Query: 126 CAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISG 185
            A +D       +    N     K +     ++  + + + P IS ++G  +        
Sbjct: 82  MAEIDFP----SLGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAVNGAAL-------L 130

Query: 186 HGRY------RIVTEKTLLA-MPENGIGLFPDVGFSYIAAK--GPGGGSVGAYLGMTGKR 236
           H  Y       + +E T+   MP    G+ P  G   +     G      G Y   T ++
Sbjct: 131 HSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHILWPLALGLY---RGRYFLFTQEK 187

Query: 237 ISTPSDALFAGLGTDYVPSGNLGSLKEAL 265
           ++    A    +  + +P   L  ++ A 
Sbjct: 188 LT-AQQAYELNVVHEVLPQSKL--MERAW 213

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253

 Score = 96.8 bits (242), Expect = 3e-23
 Identities = 46/201 (22%), Positives = 79/201 (39%), Gaps = 28/201 (13%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             VAV+ L+ P+  N ++ +M +     LD+ E+DP V+ V++ G G +AF AG D+  +
Sbjct: 7   GHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRG-KAFSAGADLAFL 65

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
               +          +      L  ++  Y KP ++ ++G  +  G G++      ++ E
Sbjct: 66  ERVTELGAEENYRHSLSLMR--LFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDE 123

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSDAL 244
           +  L   E  IG                  S      VG         TG+ +    +A 
Sbjct: 124 EARLGYTEVKIGFV------------AALVSVILVRAVGEKAAKDLLLTGRLVEA-REAK 170

Query: 245 FAGLGTDYVPSGNLGSLKEAL 265
             GL     P G    L+EA 
Sbjct: 171 ALGLVNRIAPPGKA--LEEAK 189

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274

 Score = 95.7 bits (239), Expect = 1e-22
 Identities = 48/204 (23%), Positives = 80/204 (39%), Gaps = 28/204 (13%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
              A ITL+RP ALNA++  M  + ++   E E+D RV  +++ G+G RAFC+G D+K +
Sbjct: 19  GHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTG-RAFCSGADVKEI 77

Query: 135 VAEIQKDRNTPLVPKVFTAEYS--LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
             + +     P +      E             KP ++ ++G+  G G+         I 
Sbjct: 78  PEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIA 137

Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSD 242
           +E+     P   IGL              G         +   + +     GK     + 
Sbjct: 138 SEQATFFDPHVSIGLV------------AGRELVRVSRVLPRSIALRMALMGKHERMSAQ 185

Query: 243 -ALFAGLGTDYVPSGNLGSLKEAL 265
            A   GL ++ V    L  L+ A 
Sbjct: 186 RAYELGLISEIVEHDRL--LERAH 207

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} Length = 267

 Score = 95.3 bits (238), Expect = 1e-22
 Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 4/174 (2%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             VA +TL+ P   NA++  +  +    L +  SDP V+ V++  +G   FCAG D+   
Sbjct: 19  GPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTG-GTFCAGADLSEA 77

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
            +         +  +      +L+  I E + P I+ +DG     G G+ G     +   
Sbjct: 78  GSGGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGP 137

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGL 248
           ++  A+ E  IG+ P +    +  K        A   +TG++      A   GL
Sbjct: 138 RSSFALTEARIGVAPAIISLTLLPK--LSARAAARYYLTGEKFDAR-RAEEIGL 188

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268

 Score = 95.3 bits (238), Expect = 1e-22
 Identities = 40/188 (21%), Positives = 75/188 (39%), Gaps = 14/188 (7%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + V ++T++R    NA +  +  + +  LD   +D  V+ ++++ +G + F AG D+  +
Sbjct: 12  DKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANG-KHFSAGADLTWM 70

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
            +         L   +      L+  IS+  KP I+++ G   G G G++      I + 
Sbjct: 71  QSMANFTEEENLEDSLVLGN--LMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIAST 128

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAY----LGMTGKRISTPSDALFAGLGT 250
                  E  +GL P V   Y+         +G      L M+ +     + A    L  
Sbjct: 129 SARFCFSEVKLGLIPAVISPYVVRA------IGERAAKMLFMSAEVFDA-TRAYSLNLVQ 181

Query: 251 DYVPSGNL 258
             VP   L
Sbjct: 182 HCVPDDTL 189

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233

 Score = 94.6 bits (236), Expect = 1e-22
 Identities = 42/242 (17%), Positives = 73/242 (30%), Gaps = 25/242 (10%)

Query: 57  ATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVL 116
            +M+       V      + + VI +D  K +N +   M       +D  + D  V  ++
Sbjct: 1   GSMS-----GPVTYTHD-DAIGVIRMDDGK-VNVLGPTMQQALNEAIDAADRDN-VGALV 52

Query: 117 IEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVT 176
           I G+  R F  G D+K     +           +    + L  ++  Y KP +    G  
Sbjct: 53  IAGNH-RVFSGGFDLK----VLT-SGEAKPAIDMLRGGFELSYRLLSYPKPVVIACTGHA 106

Query: 177 MGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAK--GPGGGSVGAYLGMTG 234
           +  G  +   G +R+      +   E  IG+        +      P   S         
Sbjct: 107 IAMGAFLLCSGDHRVAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTP---SAYQQAAGLA 163

Query: 235 KRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLAKYSSDPEGEA 293
           K       AL AG   +      +  L  A   A  F+            K  +  E   
Sbjct: 164 KTFF-GETALAAGFIDEISLPEVV--LSRAEEAAREFAGLNQ--QAHNATKLRARAEALK 218

Query: 294 PL 295
            +
Sbjct: 219 AI 220

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276

 Score = 95.4 bits (238), Expect = 1e-22
 Identities = 45/201 (22%), Positives = 75/201 (37%), Gaps = 25/201 (12%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+A + L+RP+  NAM+  ++ +    L+  E DP    +++ G+G  A+ AGMD+K  
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEY 75

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             E+              A       +  Y KP I++++G   G G          I  +
Sbjct: 76  FREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICAD 135

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSDAL 244
           +    + E   G+ P               S      VG    +    TGK       A 
Sbjct: 136 EATFGLSEINWGIPPG-----------NLVSKAMADTVGHRQSLMYIMTGKTFGG-QKAA 183

Query: 245 FAGLGTDYVPSGNLGSLKEAL 265
             GL  + VP   L   +  +
Sbjct: 184 EMGLVNESVPLAQL--REVTI 202

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333

 Score = 96.4 bits (240), Expect = 1e-22
 Identities = 44/231 (19%), Positives = 75/231 (32%), Gaps = 44/231 (19%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + VA IT +RP+  NA+  D  ++  + ++  + DP V  +L+ G G   FCAG D+   
Sbjct: 43  DRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRG-EGFCAGFDLSAY 101

Query: 135 ------------------------VAEIQKDRNTPLVPKVFTAEYS-LICKISEYKKPYI 169
                                   +  +  +   P+V     + +      +    KP +
Sbjct: 102 AEGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTV 161

Query: 170 SLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGF-----SYIAAKGPGGG 224
             + G  +  G  I+ H    I      +  P   +   P  G          AK     
Sbjct: 162 VKIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAGLWAHRLGDQRAKR---- 217

Query: 225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDP 274
                L  TG  I+  + A   GL  +     +L        L    +  P
Sbjct: 218 -----LLFTGDCIT-GAQAAEWGLAVEAPDPADL--DARTERLVERIAAMP 260

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Length = 275

 Score = 94.9 bits (237), Expect = 2e-22
 Identities = 44/199 (22%), Positives = 80/199 (40%), Gaps = 14/199 (7%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK-- 132
             V  + L+RP+  NAMN     +      +   D   + V++ G+G + F +G+D+   
Sbjct: 12  KHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAG-KMFTSGIDLMDM 70

Query: 133 --GVVAEIQKD--RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGR 188
              ++     D  R    +  + +        I +  KP I+ + G  +G G+ +     
Sbjct: 71  ASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACD 130

Query: 189 YRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGL 248
            R  T+     + E  +GL  DVG      K  G  S+   L  T +++    +AL +GL
Sbjct: 131 IRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMM-ADEALDSGL 189

Query: 249 GTDYVPSGNLGSLKEALLA 267
            +   P       K+ +L 
Sbjct: 190 VSRVFPD------KDVMLN 202

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260

 Score = 94.1 bits (235), Expect = 3e-22
 Identities = 44/234 (18%), Positives = 84/234 (35%), Gaps = 35/234 (14%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
            GVAV+    P  +N+++L+   +    L++ E+D   + V++    P  F AG+D+   
Sbjct: 13  AGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLT-- 69

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             E+   R+       + A   L  ++ +     +S ++G     G  ++    YRI+ +
Sbjct: 70  --EMC-GRSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILAD 126

Query: 195 --KTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSD 242
             +  + + E  +G+             P          +G          G     P++
Sbjct: 127 NPRYCIGLNETQLGIIA-----------PFWLKDTLENTIGHRAAERALQLGLLFP-PAE 174

Query: 243 ALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLAKYSSDPEGEAPL 295
           AL  G+    VP   +     AL     +   P  D    L K        + L
Sbjct: 175 ALQVGIVDQVVPEEQV--QSTALSAIAQWMAIP--DHARQLTKAMMRKATASRL 224

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258

 Score = 93.8 bits (234), Expect = 4e-22
 Identities = 42/202 (20%), Positives = 66/202 (32%), Gaps = 31/202 (15%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             + +I LDR    NA +  M       + E+E     +C ++   G   F AG+D+  +
Sbjct: 20  GHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHG-EHFTAGLDLMEL 78

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             ++         P      + ++       KP +  + G     GI +  +    +   
Sbjct: 79  APKLAASGFRY--PDGGVDPWGVV--QPRRSKPLVVAVQGTCWTAGIELMLNADIAVAAR 134

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGS-------VGAYLGM----TGKRISTPSDA 243
            T  A  E   G+             P GGS        G    M    TG       +A
Sbjct: 135 GTRFAHLEVLRGIP------------PLGGSTVRFPRAAGWTDAMRYILTGDEFDAD-EA 181

Query: 244 LFAGLGTDYVPSGNLGSLKEAL 265
           L   L T+ V  G    L  AL
Sbjct: 182 LRMRLLTEVVEPGEE--LARAL 201

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258

 Score = 93.0 bits (232), Expect = 7e-22
 Identities = 54/223 (24%), Positives = 98/223 (43%), Gaps = 35/223 (15%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             V +I L RP  LNA++  M  +  + ++ ++ + +V+ +++ G G RAF AG DI+  
Sbjct: 13  GAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRG-RAFAAGADIQ-- 69

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             E+ KD    L      A++    ++S  K P I+ ++G+ +G G  ++      + + 
Sbjct: 70  --EMAKDDPIRLEWLNQFADWD---RLSIVKTPMIAAVNGLALGGGFELALSCDLIVASS 124

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSDAL 244
                 PE  +G+ P  G          GG+      +G    +    TG R+S   +A 
Sbjct: 125 AAEFGFPEVNLGVMP--GA---------GGTQRLTKLIGPKRALEWLWTGARMSA-KEAE 172

Query: 245 FAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLAKYS 286
             G+    V    L  ++E + LA   +E P   +   L K +
Sbjct: 173 QLGIVNRVVSPELL--MEETMRLAGRLAEQPP--LALRLIKEA 211

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264

 Score = 93.0 bits (232), Expect = 7e-22
 Identities = 40/210 (19%), Positives = 72/210 (34%), Gaps = 39/210 (18%)

Query: 52  NSRTFATMAAA--GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESD 109
           +     T+ A   G    +        V  I L RP+  NA+N  +  +    + +   D
Sbjct: 5   HHHHMGTLEAQTQGPGSMIGITQA-EAVLTIELQRPERRNALNSQLVEELTQAIRK-AGD 62

Query: 110 PRVKCVLIEGSGPRAFCAGMDIKG-VVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPY 168
              + +++ G G  AFCAG D+ G   A    DR              L   +     P 
Sbjct: 63  GSARAIVLTGQG-TAFCAGADLSGDAFAADYPDRLIE-----------LHKAMDASPMPV 110

Query: 169 ISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS--- 225
           +  ++G  +G G+ ++     R+V        P +  GL  D                  
Sbjct: 111 VGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALD-----------NWSIRRL 159

Query: 226 ---VGAY----LGMTGKRISTPSDALFAGL 248
              VG      + ++ ++++    AL  G+
Sbjct: 160 SSLVGHGRARAMLLSAEKLTA-EIALHTGM 188

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257

 Score = 92.7 bits (231), Expect = 8e-22
 Identities = 36/204 (17%), Positives = 63/204 (30%), Gaps = 17/204 (8%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
            GV ++T+               +      +   D   K V++ G+G  +FC  +D    
Sbjct: 24  GGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTG-PSFCNEIDFTSF 82

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
                         ++      L+  +   + P I+ ++G        I       +  E
Sbjct: 83  -----NLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVTN-APEIPVMSDIVLAAE 136

Query: 195 KTLLA-MPENGIGLFPDVGFSYIAAK--GPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 251
                  P    G+ P  G   +     G      G Y  +TG+ +     AL  G   +
Sbjct: 137 SATFQDGPHFPSGIVPGDGAHVVWPHVLGSN---RGRYFLLTGQELD-ARTALDYGAVNE 192

Query: 252 YVPSGNLGSLKEAL-LAVTFSEDP 274
            +    L  L  A  LA   +E P
Sbjct: 193 VLSEQEL--LPRAWELARGIAEKP 214

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265

 Score = 93.0 bits (232), Expect = 8e-22
 Identities = 44/201 (21%), Positives = 79/201 (39%), Gaps = 29/201 (14%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             V ++T++RP   NA++ +M  ++ +  DE + D  ++  ++ G+G  A+C G D+   
Sbjct: 17  GPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAG-SAYCVGGDLS-- 73

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             +    R+    P         +       KP I+ ++G  +G G  +      R+  E
Sbjct: 74  --DGWMVRDGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDE 131

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSDAL 244
                +PE   GL P  G          G        +     M    TG+ ++   +A 
Sbjct: 132 HATFGLPEVQRGLVP--GA---------GSMVRLKRQIPYTKAMEMILTGEPLTAF-EAY 179

Query: 245 FAGLGTDYVPSGNLGSLKEAL 265
             GL    VP+G    L +A 
Sbjct: 180 HFGLVGHVVPAGTA--LDKAR 198

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267

 Score = 92.2 bits (230), Expect = 1e-21
 Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 30/201 (14%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             V VIT++RP+A NA+N  + I     L+E + DP V+ V++ G+G ++FCAG D+K  
Sbjct: 17  GNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLK-- 74

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
              I   R   L                   KP I+ ++G  +G G  ++      +  E
Sbjct: 75  --AIA--RRENLYHPDHPEWGFAGYVRHFIDKPTIAAVNGTALGGGTELALASDLVVADE 130

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSDAL 244
           +    +PE   GL               GG       +   + M    TG+ +S    A 
Sbjct: 131 RAQFGLPEVKRGLIAA-----------AGGVFRIAEQLPRKVAMRLLLTGEPLSAA-AAR 178

Query: 245 FAGLGTDYVPSGNLGSLKEAL 265
             GL  + V +G++  L  AL
Sbjct: 179 DWGLINEVVEAGSV--LDAAL 197

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278

 Score = 92.6 bits (231), Expect = 2e-21
 Identities = 51/225 (22%), Positives = 86/225 (38%), Gaps = 32/225 (14%)

Query: 53  SRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRV 112
             T  T A   +              ++T++RP   NA++ +M        D  ++DP +
Sbjct: 7   PNTSETPANGESGPDALVEQR-GHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDI 65

Query: 113 KCVLIEGSGPRAFCAGMDIKGVVAE--IQKDRNTPLVPKVFTAEYSLICKISEYKKPYIS 170
           +C ++ G+G   FCAGMD+K    +      ++    P    A    + K    KKP I+
Sbjct: 66  RCCILTGAG-GYFCAGMDLKAATKKPPGDSFKDGSYDPSRIDA----LLKGRRLKKPLIA 120

Query: 171 LMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS----- 225
            ++G  +  G  I      R+  E     + E    L+P            GG +     
Sbjct: 121 AVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPM-----------GGSAVRLVR 169

Query: 226 -VGAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL 265
            +   +      TG+ I+  ++A   GL    VP G    L +AL
Sbjct: 170 QIPYTVACDLLLTGRHITA-AEAKEMGLVGHVVPDGQA--LTKAL 211

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254

 Score = 91.5 bits (228), Expect = 2e-21
 Identities = 34/243 (13%), Positives = 67/243 (27%), Gaps = 34/243 (13%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
                 TL RP+  NA++ ++       +D      +V  ++  G+G R F AG D    
Sbjct: 15  PAAWTFTLSRPEKRNALSAELVEALIDGVDAAH-REQVPLLVFAGAG-RNFSAGFDFTDY 72

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
                + ++   +         L+ +++      ++L  G   G G+ +    ++R  T 
Sbjct: 73  -----ETQSEGDLLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTP 127

Query: 195 KTLLAMPENGIGLFPD-------VGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAG 247
           +    MP    GL          VG     A           +  + +      +A   G
Sbjct: 128 EAGFRMPGLKFGLVLGTRRFRDIVGAD--QAL---------SILGSARAFDAD-EARRIG 175

Query: 248 LGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCF 306
              D                A   +                  + +      L       
Sbjct: 176 FVRDCAAQAQW--PALIDAAAEAATALD--PATRATLHRVLRDDHDDADLAAL---ARSA 228

Query: 307 SSE 309
           +  
Sbjct: 229 AQP 231

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260

 Score = 91.0 bits (227), Expect = 3e-21
 Identities = 67/224 (29%), Positives = 102/224 (45%), Gaps = 37/224 (16%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + V +I L+RPKALNA+   +  +    L+ +E DP V  +++ G   +AF AG DIK  
Sbjct: 15  SSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGE-KAFAAGADIK-- 71

Query: 135 VAEIQKDRNTPLVPKVFTAEY-SLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
             E+Q +R        ++ ++ S    I+  KKP I+ ++G  +G G  ++         
Sbjct: 72  --EMQ-NRT---FQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAG 125

Query: 194 EKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSDA 243
           EK     PE  +G  P  G          GG+      VG  L M    TG RIS   DA
Sbjct: 126 EKAQFGQPEILLGTIP--GA---------GGTQRLTRAVGKSLAMEMVLTGDRISA-QDA 173

Query: 244 LFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLAKYS 286
             AGL +   P   L  ++EA+  A   + +    I+  +AK S
Sbjct: 174 KQAGLVSKIFPVETL--VEEAIQCAEKIANNSK--IIVAMAKES 213

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278

 Score = 91.5 bits (228), Expect = 3e-21
 Identities = 68/255 (26%), Positives = 112/255 (43%), Gaps = 42/255 (16%)

Query: 53  SRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRV 112
           ++   +M      E +        V +ITL+RP+ALNA+N  +  +  S   E + DP +
Sbjct: 16  TQGPGSMT----YETILVERD-QRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDI 70

Query: 113 KCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEY-SLICKISEYKKPYISL 171
             ++I GS  +AF AG DIK    E+  D         FTA++ +   K++  + P I+ 
Sbjct: 71  GAIIITGSA-KAFAAGADIK----EMA-DLT---FADAFTADFFATWGKLAAVRTPTIAA 121

Query: 172 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------ 225
           + G  +G G  ++      I  +      PE  +G+ P  G          GGS      
Sbjct: 122 VAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLP--GM---------GGSQRLTRA 170

Query: 226 VGAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVA 280
           +G    M    TG+ +   ++A  +GL +  VP+ +L  L EA   A T S+       A
Sbjct: 171 IGKAKAMDLILTGRTMDA-AEAERSGLVSRVVPADDL--LTEARATATTISQMSA--SAA 225

Query: 281 LLAKYSSDPEGEAPL 295
            +AK + +   E+ L
Sbjct: 226 RMAKEAVNRAFESSL 240

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262

 Score = 91.1 bits (227), Expect = 4e-21
 Identities = 47/219 (21%), Positives = 79/219 (36%), Gaps = 34/219 (15%)

Query: 57  ATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVL 116
            +M+    +  V+       V  + L+RP A NA++        +   E+++DP     +
Sbjct: 3   GSMSEE-MQPAVRVEKA-GPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAV 60

Query: 117 IEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVT 176
           + G     FCAG D+K     +  DR   L P        +        KP I+ + G  
Sbjct: 61  LWGDN-GTFCAGADLK----AMGTDRGNELHPHGP---GPMGPSRLRLSKPVIAAISGHA 112

Query: 177 MGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYL 230
           +  GI ++     R+V E  +L +     G+               GG+      +G   
Sbjct: 113 VAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLI-----------DGGTIRLPRLIGHSR 161

Query: 231 GM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL 265
            M    TG+ +    +AL  GL    V  G     + A 
Sbjct: 162 AMDLILTGRPVHAN-EALDIGLVNRVVARGQA--REAAE 197

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263

 Score = 91.1 bits (227), Expect = 4e-21
 Identities = 56/248 (22%), Positives = 101/248 (40%), Gaps = 35/248 (14%)

Query: 59  MAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIE 118
             +      +  +    GV +I LDRP ALNA+N  ++ +      ++++D  +  +++ 
Sbjct: 2   PGSMTTYTTIATSRPVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVT 61

Query: 119 GSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMG 178
           GS  RAF AG DI     E+          +   + +     +++ +KP ++ + G  +G
Sbjct: 62  GSE-RAFAAGADIA----EMVTLTPHQARERNLLSGWD---SLTQVRKPIVAAVAGYALG 113

Query: 179 FGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM 232
            G  ++      I  +      PE  +G+ P  G          GG+      VG    M
Sbjct: 114 GGCELAMLCDLVIAADTARFGQPEITLGILP--GL---------GGTQRLTRAVGKAKAM 162

Query: 233 ----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLAKYSS 287
               TG+ ++   +A   GL +  VP+ +L  L EAL +A   +            K + 
Sbjct: 163 DLCLTGRSLTA-EEAERVGLVSRIVPAADL--LDEALAVAQRIARMSR--PAGRAVKDAI 217

Query: 288 DPEGEAPL 295
           +   E PL
Sbjct: 218 NEAFERPL 225

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265

 Score = 90.6 bits (226), Expect = 5e-21
 Identities = 45/219 (20%), Positives = 92/219 (42%), Gaps = 33/219 (15%)

Query: 59  MAAAGAE-EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLI 117
           M A   + +++      +G+A I L   K+ N+ +L+   ++ + +D+   DP +K V++
Sbjct: 1   MTAVETKKQYLTVFKE-DGIAEIHLHINKS-NSYDLEFYKEFNAAIDDIRFDPDIKVVIV 58

Query: 118 EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTM 177
               P+ F AG DI      ++   +     +        + KI+   + YI+ ++G T+
Sbjct: 59  MSDVPKFFSAGADIN----FLR-SADPRFKTQFCLFCNETLDKIARSPQVYIACLEGHTV 113

Query: 178 GFGIGISGHGRYRIVTEKTL-LAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYL 230
           G G+ ++     R + ++   + +PE  +G+    G          GG+      +G   
Sbjct: 114 GGGLEMALACDLRFMGDEAGKIGLPEVSLGVLA--GT---------GGTQRLARLIGYSR 162

Query: 231 GM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL 265
            +    TG+ I+ P +AL  GL     P       +   
Sbjct: 163 ALDMNITGETIT-PQEALEIGLVNRVFPQAET--RERTR 198

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334

 Score = 91.0 bits (226), Expect = 1e-20
 Identities = 39/208 (18%), Positives = 61/208 (29%), Gaps = 25/208 (12%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGP------RAFCAG 128
           +    +  +RP+  NA       +    LD     P V  VL+ G+GP       AFC+G
Sbjct: 65  DATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSG 124

Query: 129 MDIK-----GVVAEIQKDRNTPLVPKVFTAEYS-LICKISEYKKPYISLMDGVTMGFGIG 182
            D +     G         +T  V +        +   I    K  I L++G   G G  
Sbjct: 125 GDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHS 184

Query: 183 ISGHGRYRIV-TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGA----YLGMTGKRI 237
           +       +   E       +  +G F     S   A+      VG      +   G+  
Sbjct: 185 LHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLAR-----QVGQKFAREIFFLGRTY 239

Query: 238 STPSDALFAGLGTDYVPSGNLGSLKEAL 265
           +        G          L      L
Sbjct: 240 T-AEQMHQMGAVNAVAEHAEL--ETVGL 264

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265

 Score = 89.5 bits (223), Expect = 2e-20
 Identities = 41/201 (20%), Positives = 73/201 (36%), Gaps = 35/201 (17%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + + +IT++RPKA N++N  +       +D  ++D  +   ++ G+G  +FCAGMD+K  
Sbjct: 23  DRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAG-GSFCAGMDLKA- 80

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
                      +V                  KP I+ ++G  +  G  ++      +   
Sbjct: 81  ----FARGENVVVEGRGLGF-----TERPPAKPLIAAVEGYALAGGTELALATDLIVAAR 131

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSDAL 244
            +   +PE   GL              GGG       +   + M    TG  +S    A 
Sbjct: 132 DSAFGIPEVKRGLVAG-----------GGGLLRLPERIPYAIAMELALTGDNLSA-ERAH 179

Query: 245 FAGLGTDYVPSGNLGSLKEAL 265
             G+       G    L  A+
Sbjct: 180 ALGMVNVLAEPGAA--LDAAI 198

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277

 Score = 88.8 bits (221), Expect = 3e-20
 Identities = 52/255 (20%), Positives = 86/255 (33%), Gaps = 35/255 (13%)

Query: 52  NSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPR 111
            +    T       EFV       G+A + + RP   NAM   +  +  +  DE      
Sbjct: 10  GTLEAQTQGPGSMNEFVSVVAD-QGLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDD 67

Query: 112 VKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISL 171
           +  V++ G     F AG D+     E++   N P            I  ++   KP ++ 
Sbjct: 68  IGAVVLFGGH-EIFSAGDDMP----ELR-TLNAPEADTAARVRLEAIDAVAAIPKPTVAA 121

Query: 172 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------ 225
           + G  +G G+ ++    +R+  +       E   GL P  G          GG       
Sbjct: 122 VTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIP--GG---------GGMGRLTRV 170

Query: 226 VGAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVA 280
           VG+        +G+      +AL  GL  D V   ++     A+  A  + E P      
Sbjct: 171 VGSSRAKELVFSGRFFDA-EEALALGLIDDMVAPDDV--YDSAVAWARRYLECPP--RAL 225

Query: 281 LLAKYSSDPEGEAPL 295
             AK   +   E   
Sbjct: 226 AAAKAVINDVFELEA 240

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256

 Score = 87.9 bits (219), Expect = 4e-20
 Identities = 43/201 (21%), Positives = 69/201 (34%), Gaps = 36/201 (17%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + V +IT++RP A NA+N  +     +  D+ +S   +   +I G+G   FCAGMD+K  
Sbjct: 15  DRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAG-GNFCAGMDLK-- 71

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
                          +              +KP I+ ++G  +  G  +       +   
Sbjct: 72  --AFVSGEAVLSERGLGFTNVPP-------RKPIIAAVEGFALAGGTELVLSCDLVVAGR 122

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSDAL 244
                +PE   GL               GG       +   + M    TG+  +   DA 
Sbjct: 123 SAKFGIPEVKRGLVAG-----------AGGLLRLPNRIPYQVAMELALTGESFTA-EDAA 170

Query: 245 FAGLGTDYVPSGNLGSLKEAL 265
             G     V  G    L  AL
Sbjct: 171 KYGFINRLVDDGQA--LDTAL 189

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289

 Score = 88.8 bits (221), Expect = 4e-20
 Identities = 43/245 (17%), Positives = 73/245 (29%), Gaps = 42/245 (17%)

Query: 59  MAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIE 118
           M+   + E +K  +    V   T + P  +N +  ++     + L+E       + V+ +
Sbjct: 1   MSLTASYETIKARLD-GTVLSATFNAP-PMNLIGPEVVRDLVALLEELAHPTAPRVVIFD 58

Query: 119 GSGPRAFCAGMDIK-----GVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMD 173
            +    F   +D+         A          +  +F        K+S+     I+ + 
Sbjct: 59  SADADFFFPHVDMTKVPEYTAEAAKAGGPGDASLGMLFR-------KLSQLPAVTIAKLR 111

Query: 174 GVTMGFGIGISGHGRYRIV-TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------V 226
           G   G G         R    E  +L  PE GIG  P  G          G        +
Sbjct: 112 GRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPP--GA---------GAIQHLTRLL 160

Query: 227 GAYLGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVAL 281
           G    +    T         A   G     VP   L   +    +A   S  P      +
Sbjct: 161 GRGRALEAVLTSSDFD-ADLAERYGWVNRAVPDAEL--DEFVAGIAARMSGFPR--DALI 215

Query: 282 LAKYS 286
            AK +
Sbjct: 216 AAKSA 220

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275

 Score = 88.0 bits (219), Expect = 6e-20
 Identities = 46/201 (22%), Positives = 80/201 (39%), Gaps = 32/201 (15%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             V  I L+RPK  NA+N  +    K  L   +   +++ V+I G G   F AG+D+   
Sbjct: 24  GPVLTIGLNRPKKRNALNDGLMAALKDCLT--DIPDQIRAVVIHGIG-DHFSAGLDLS-- 78

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             E++ +R+           + +  KI   + P I+ + G  +G G+ ++     R+   
Sbjct: 79  --ELR-ERDATEGLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEA 135

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSDAL 244
               A+PE   G+F   G          GGS      +G         TG+  S   + +
Sbjct: 136 SAYYALPEGSRGIFV--GG---------GGSVRLPRLIGVARMADMMLTGRVYSAA-EGV 183

Query: 245 FAGLGTDYVPSGNLGSLKEAL 265
             G     + +G+     +AL
Sbjct: 184 VHGFSQYLIENGSA--YDKAL 202

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287

 Score = 88.0 bits (219), Expect = 8e-20
 Identities = 44/224 (19%), Positives = 70/224 (31%), Gaps = 29/224 (12%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVA I LD P  +N +   M  + ++ L     D  V+ ++   + P  F A +D++  
Sbjct: 17  HGVARIILDNP-PVNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIG 75

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIV-T 193
                        P       ++   I    +  I  + G   G G              
Sbjct: 76  EKMDALQELAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAA 135

Query: 194 EKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSDA 243
           E   L   E  +G+ P  G          GG+      VG    +    T         A
Sbjct: 136 ETAGLGQIEALMGIIP--GG---------GGTQYLRGRVGRNRALEVVLTADLFDA-ETA 183

Query: 244 LFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLAKYS 286
              G     +P+  L   +    +A   +  P  D V   AK S
Sbjct: 184 ASYGWINRALPADEL--DEYVDRVARNIAALP--DGVIEAAKRS 223

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232

 Score = 86.5 bits (215), Expect = 8e-20
 Identities = 43/227 (18%), Positives = 74/227 (32%), Gaps = 26/227 (11%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVA +TL+  K +NA++ D+ I + + LD+ E D  +   +I    P     G D+K  
Sbjct: 14  DGVATLTLNNGK-VNAISPDVIIAFNAALDQAEKDRAI---VIVTGQPGILSGGYDLK-- 67

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRI-VT 193
              +    +      +     +L  ++  +  P I    G  +  G  +     YRI V 
Sbjct: 68  --VMTS--SAEAAINLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVA 123

Query: 194 EKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGM----TGKRISTPSDALFAGLG 249
               + + E  IG+        +A        +            +    P  A+ AG  
Sbjct: 124 GPFSIGLNEVQIGMTMHHAGIELARD-----RLRKSAFNRSVINAEMFD-PEGAMAAGFL 177

Query: 250 TDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLAKYSSDPEGEAPL 295
              V    L     AL +A    +           K          L
Sbjct: 178 DKVVSVEEL--QGAALAVAAQLKKINM--NAHKKTKLKVRKGLLDTL 220

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440

 Score = 89.9 bits (223), Expect = 9e-20
 Identities = 39/220 (17%), Positives = 74/220 (33%), Gaps = 44/220 (20%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS--------GPRAFC 126
           +GVA +T+ R   LNA +       ++ +D    DP V+  L+ G         G R F 
Sbjct: 175 DGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFS 234

Query: 127 AGMDIKGV------VAEIQKDRNTPLVPKVFTAEYSLIC-----KISEYKKPYISLMDGV 175
           AG+++K +      + +    R    + K+     +             +KP+++ +DG 
Sbjct: 235 AGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGF 294

Query: 176 TMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAY 229
            +G G  +       + +     ++P    G+             PG  +       G  
Sbjct: 295 AIGGGAQLLLVFDRVLASSDAYFSLPAAKEGII------------PGAANLRLGRFAGPR 342

Query: 230 LGM----TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL 265
           +       G+RI    +     L  + V    L       
Sbjct: 343 VSRQVILEGRRIWA-KEPEARLLVDEVVEPDEL--DAAIE 379

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261

 Score = 86.4 bits (215), Expect = 1e-19
 Identities = 53/224 (23%), Positives = 80/224 (35%), Gaps = 35/224 (15%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + +AV TL+   A NAM+  +       +D+ E D  ++ V+I G G R F AG DIK  
Sbjct: 14  DHIAVATLNHAPA-NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEG-RFFSAGADIK-- 69

Query: 135 VAEIQKDRNTPLVPKVFTAEY-SLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
             E                       ++ +  KP I+ + G  +G G+  +     R  T
Sbjct: 70  --EFT-SVTEAKQATELAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFAT 126

Query: 194 EKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSDA 243
           E   L +PE  +GL P  GF          G+      VG         T   I+  ++A
Sbjct: 127 ESAKLGLPELTLGLIP--GF---------AGTQRLPRYVGKAKACEMMLTSTPITG-AEA 174

Query: 244 LFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLAKYS 286
           L  GL            L + L +A   +        A      
Sbjct: 175 LKWGLVNGVFAEETF--LDDTLKVAKQIAGKSP--ATARAVLEL 214

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score = 89.3 bits (222), Expect = 2e-19
 Identities = 49/229 (21%), Positives = 88/229 (38%), Gaps = 40/229 (17%)

Query: 52  NSRTFATMAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPR 111
           +    + +   G+       +  + +A+I L  P   NA++  +  + ++ L +  SD  
Sbjct: 7   HHHHSSGLVPRGSHMAEYLRLP-HSLAMIRLCNPPV-NAVSPTVIREVRNGLQKAGSDHT 64

Query: 112 VKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISL 171
           VK ++I       FCAG DI               +  +         +I  Y+KP ++ 
Sbjct: 65  VKAIVIC-GANGNFCAGADIH----GFSAFTPGLALGSLVD-------EIQRYQKPVLAA 112

Query: 172 MDGVTMGFG--IGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG------ 223
           + GV +G G  + +  H  YRI   K  + +PE  +G+ P          G  G      
Sbjct: 113 IQGVALGGGLELALGCH--YRIANAKARVGLPEVTLGILP----------GARGTQLLPR 160

Query: 224 --GSVGAYLGM--TGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAV 268
             G   A L +  +GK +S   +AL  G+    V S  +    +    +
Sbjct: 161 VVGVPVA-LDLITSGKYLS-ADEALRLGILDAVVKSDPVEEAIKFAQKI 207

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261

 Score = 85.3 bits (212), Expect = 4e-19
 Identities = 48/253 (18%), Positives = 82/253 (32%), Gaps = 41/253 (16%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS-GPRAFCAGMDIKG 133
           N VAVI  +  + LNA++          L +      ++C+++    G + F AG DI  
Sbjct: 12  NKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIH- 69

Query: 134 VVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
              E+      PL       +  +   I ++ KP IS+++G   G    +       I  
Sbjct: 70  ---ELPSGGRDPLSYDDPLRQ--ITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAA 124

Query: 194 EKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSDA 243
             +  +M    +G+                G        G ++      T   I+    A
Sbjct: 125 STSTFSMTPVNLGVPY--NL---------VGIHNLTRDAGFHIVKELIFTASPITA-QRA 172

Query: 244 LFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLAKYSSDPEGEAPLK------ 296
           L  G+    V    L      L +A   SE     +   + K      GEA         
Sbjct: 173 LAVGILNHVVEVEEL--EDFTLQMAHHISEKAP--LAIAVIKEELRVLGEAHTMNSDEFE 228

Query: 297 LLLPQITSCFSSE 309
            +     + + SE
Sbjct: 229 RIQGMRRAVYDSE 241

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score = 88.5 bits (220), Expect = 5e-19
 Identities = 53/210 (25%), Positives = 82/210 (39%), Gaps = 27/210 (12%)

Query: 59  MAAAGAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIE 118
           M +    + V   V  +GVAVITL  P   N+++ D+    KS  +E  S   VK ++I 
Sbjct: 1   MDSRTKGKTVM-EVGGDGVAVITLINPPV-NSLSFDVLYNLKSNYEEALSRNDVKAIVIT 58

Query: 119 GSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMG 178
                 F  G DI G     + +   P    +      +   +   +KP ++ +DG+ +G
Sbjct: 59  -GAKGRFSGGFDISGFGEMQKGNVKEPKAGYISIDI--ITDLLEAARKPSVAAIDGLALG 115

Query: 179 FGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG--------GSVGAYL 230
            G+ ++     RI      L +PE  +G+ P          G GG        G   A L
Sbjct: 116 GGLELAMACHARISAPAAQLGLPELQLGVIP----------GFGGTQRLPRLVGLTKA-L 164

Query: 231 GM--TGKRISTPSDALFAGLGTDYVPSGNL 258
            M  T K +    +    GL    VP   L
Sbjct: 165 EMILTSKPVK-AEEGHSLGLIDAVVPPAEL 193

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289

 Score = 85.0 bits (211), Expect = 8e-19
 Identities = 52/263 (19%), Positives = 92/263 (34%), Gaps = 55/263 (20%)

Query: 72  VHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDI 131
              +G+A IT++RP+  NA       +    L +   D  +  +++ G+G +AFC+G D 
Sbjct: 33  KSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQ 92

Query: 132 K------GVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISG 185
           K      G   +        L             +I    KP ++++ G ++G G    G
Sbjct: 93  KVRGDYGGYKDDSGVHHLNVL--DFQR-------QIRTCPKPVVAMVAGYSIG-G----G 138

Query: 186 HG-----RYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM-- 232
           H         I  +  +       +G F             G G+      VG       
Sbjct: 139 HVLHMMCDLTIAADNAIFGQTGPKVGSFD-----------GGWGASYMARIVGQKKAREI 187

Query: 233 --TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLAKYS--S 287
               ++      AL  GL    VP  +L   KE +       +  +  +     K +  +
Sbjct: 188 WFLCRQYDA-KQALDMGLVNTVVPLADL--EKETVRWCREMLQ--NSPMALRCLKAALNA 242

Query: 288 DPEGEAPLKLLLPQITS-CFSSE 309
           D +G+A L+ L    T   + +E
Sbjct: 243 DCDGQAGLQELAGNATMLFYMTE 265

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273

 Score = 83.4 bits (207), Expect = 2e-18
 Identities = 40/203 (19%), Positives = 68/203 (33%), Gaps = 32/203 (15%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
            G+A +T++RP+  NA       +          D  V  +++ G G  AFC+G D K  
Sbjct: 21  EGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQK-- 78

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLIC--KISEYKKPYISLMDGVTMGFGIGISGHGRYRIV 192
               ++     +          L     I    KP I+++ G  +G G  ++      I 
Sbjct: 79  ----KRGHGGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIA 134

Query: 193 TEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKRISTPSD 242
            +  +       +G F             G GS      VG           ++ +   +
Sbjct: 135 ADNAIFGQTGPKVGSFD-----------AGYGSGYLARIVGHKKAREIWYLCRQYNA-QE 182

Query: 243 ALFAGLGTDYVPSGNLGSLKEAL 265
           AL  GL    VP   +    E +
Sbjct: 183 ALDMGLVNTVVPLEKV--EDETV 203

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score = 85.0 bits (210), Expect = 4e-18
 Identities = 33/211 (15%), Positives = 67/211 (31%), Gaps = 41/211 (19%)

Query: 75  NGVAVITLDRPK----------ALNAMNLDMDIKYKSFLDEWESD-PRVKCVLIEGSGPR 123
             VA + +D  +           LN+ +L +DI+    +     + P V+ V++     R
Sbjct: 29  GPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDR 88

Query: 124 AFCAGMDIK--GVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFG- 180
            FC+G +I   G+     K        +                  +++ ++G   G G 
Sbjct: 89  VFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDS---SRHSGLKFLAAVNGACAGGGY 145

Query: 181 -IGISGHGRYRIVTEKTLLAMPE-NGIGLFPDVGFSYIAAKGPGGG-------SVGAYLG 231
            + ++    Y +    + +++PE   +G+ P          G GG         V     
Sbjct: 146 ELALACDEIYLVDDRSSSVSLPEVPLLGVLP----------GTGGLTRVTDKRKVRHDRA 195

Query: 232 M----TGKRISTPSDALFAGLGTDYVPSGNL 258
                  + +     A    L  + V     
Sbjct: 196 DIFCTVVEGVR-GERAKAWRLVDEVVKPNQF 225

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score = 84.2 bits (209), Expect = 1e-17
 Identities = 38/198 (19%), Positives = 76/198 (38%), Gaps = 30/198 (15%)

Query: 74  PNGVAVITLDRP-KALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
            +G+  +  D   +++N  N     + +  +D  ++D  VK V++  SG   F  G DI 
Sbjct: 14  ESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVS-SGKDVFIVGADIT 72

Query: 133 GVVAEIQKDRNTPLVPKVFTAEY--SLICKISEYKKPYISLMDGVTMGFGIGISGHGRYR 190
               E  ++   P    +        +     +   P ++ ++G+ +G G+ +     +R
Sbjct: 73  ----EFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFR 128

Query: 191 IVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG--------GSVGAYLGM--TGKRISTP 240
           ++ +   + +PE  +G++P          G GG        G   A +    +GK     
Sbjct: 129 VMADSAKIGLPEVKLGIYP----------GFGGTVRLPRLIGVDNA-VEWIASGKENR-A 176

Query: 241 SDALFAGLGTDYVPSGNL 258
            DAL        V +  L
Sbjct: 177 EDALKVSAVDAVVTADKL 194

>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279

 Score = 80.8 bits (200), Expect = 2e-17
 Identities = 38/209 (18%), Positives = 67/209 (32%), Gaps = 43/209 (20%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + +A ITL+RP+A NA N ++  +  +       D  V  +++  +G + F AG D++G 
Sbjct: 28  DRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANG-KHFSAGHDLRGG 86

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFG--------IGISGH 186
                K     +             +     KP I+ + G  +  G        +     
Sbjct: 87  GPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDL----- 141

Query: 187 GRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM----TGKR 236
               I  E  L + P   + +              G         +G         TG+ 
Sbjct: 142 ---IIAAEDALFSDPVVLMDI-------------GGVEYHGHTWELGPRKAKEILFTGRA 185

Query: 237 ISTPSDALFAGLGTDYVPSGNLGSLKEAL 265
           + T  +    G+    VP   L    E  
Sbjct: 186 M-TAEEVAQTGMVNRVVPRDRL--DAETR 211

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275

 Score = 78.8 bits (195), Expect = 1e-16
 Identities = 56/264 (21%), Positives = 86/264 (32%), Gaps = 59/264 (22%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGP-----RAFCAGM 129
            G+A I ++RP   NA       +          D R+  VL+ G+GP      AFC+G 
Sbjct: 18  GGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGG 77

Query: 130 DIK-----GVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGIS 184
           D       G + +    R   L          L   I    K  I+L+ G  +G G    
Sbjct: 78  DQSVRGEGGYIDDQGTPRLNVL---------DLQRLIRSMPKVVIALVAGYAIG-G---- 123

Query: 185 GHGR-----YRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM- 232
           GH         I  +  +       +G F             G GS      VG      
Sbjct: 124 GHVLHLVCDLTIAADNAIFGQTGPKVGSFD-----------GGFGSSYLARIVGQKKARE 172

Query: 233 ---TGKRISTPSDALFAGLGTDYVPSGNLGSLKEAL-LAVTFSEDPHQDIVALLAKYS-- 286
                ++ S   +A   G+    VP   L   +E +  A          +     K +  
Sbjct: 173 IWYLCRQYSA-QEAERMGMVNTVVPVDRL--EEEGIQWAKEILSKSP--LAIRCLKAAFN 227

Query: 287 SDPEGEAPLKLLLPQIT-SCFSSE 309
           +D +G+A L+ L    T   + +E
Sbjct: 228 ADCDGQAGLQELAGNATLLYYMTE 251

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305

 Score = 76.7 bits (189), Expect = 8e-16
 Identities = 37/215 (17%), Positives = 62/215 (28%), Gaps = 38/215 (17%)

Query: 75  NGVAVITLDRPKALN--------AMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFC 126
             V  I +    A+N         +  D+     +      +   +   ++  S    F 
Sbjct: 40  RDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFN 99

Query: 127 AGMDIKGVVAEIQKDRNTPLV--PKVFTAEYSLICKISEYKKPYISLMDGVTMGFG--IG 182
            G D+      I++     L+   +               +   I+L+ G  +G G    
Sbjct: 100 LGGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAA 159

Query: 183 ISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS------VGAYLGM---- 232
           +S H    I  E  ++ +PE    LFP  G          G        + A+L      
Sbjct: 160 LSCH--TIIAEEGVMMGLPEVLFDLFP--GM---------GAYSFMCQRISAHLAQKIML 206

Query: 233 TGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLA 267
            G   S     L  GL    VP G    +      
Sbjct: 207 EGNLYSA-EQLLGMGLVDRVVPRGQG--VAAVEQV 238

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 3e-07
 Identities = 53/393 (13%), Positives = 123/393 (31%), Gaps = 106/393 (26%)

Query: 91  MNLD---MDIKYKS----FLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAE------ 137
           M+ +      +YK     F D +  +    C  ++   P++  +  +I  ++        
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDN--FDCKDVQDM-PKSILSKEEIDHIIMSKDAVSG 63

Query: 138 ------IQKDRNTPLVPKVFTAE-----YS-LICKIS-EYKKP------YISLMDGVTMG 178
                     +   +V + F  E     Y  L+  I  E ++P      YI   D +   
Sbjct: 64  TLRLFWTLLSKQEEMV-QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122

Query: 179 FGIGISGH-GRYRIVTE--KTLLAM-PENGIGLFPDVGF--SYIAAKGPGGGSVGAYLG- 231
             +    +  R +   +  + LL + P   + +   +G   +++A        V   +  
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182

Query: 232 ----MTGKRISTPSD------ALFAGLGTDYVPSG--------NLGSLKEALLAVTFSED 273
               +  K  ++P         L   +  ++             + S++  L  +     
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSK 241

Query: 274 PHQDIVALL-----AKYSSDPEGEAPL----KLLL----PQITSCFSSEKSVRQIIEELK 320
           P+++   LL          + +         K+LL     Q+T   S+  +    ++   
Sbjct: 242 PYEN--CLLVLLNV----QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 321 KHQSSAETS--VAQWADEALQG----MGKGAPFSLCL----------TQKYFSKVASAHG 364
              +  E    + ++ D   Q     +    P  L +          T   +  V     
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV----- 350

Query: 365 KTDNELSKNPKWNPASLEEVNQSEVEALFEPLG 397
              ++L+   +   +SL  +  +E   +F+ L 
Sbjct: 351 -NCDKLTTIIE---SSLNVLEPAEYRKMFDRLS 379

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	405
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	100.0
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	100.0
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	100.0
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	100.0
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	100.0
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	100.0
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	100.0
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	100.0
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	100.0
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	100.0
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	100.0
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	100.0
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	100.0
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	100.0
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	100.0
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	100.0
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	100.0
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	100.0
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	100.0
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	100.0
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	100.0
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	100.0
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	100.0
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	100.0
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	100.0
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	100.0
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	100.0
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	100.0
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	100.0
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	100.0
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	100.0
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	100.0
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	100.0
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	100.0
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	100.0
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	100.0
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	100.0
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	100.0
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	100.0
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	100.0
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	100.0
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	100.0
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	100.0
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	100.0
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	100.0
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	100.0
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	100.0
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	100.0
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	100.0
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	100.0
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	100.0
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	100.0
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	100.0
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	100.0
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	100.0
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	100.0
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	100.0
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	100.0
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	100.0
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	100.0
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	100.0
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	100.0
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	100.0
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	100.0
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	100.0
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	100.0
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	100.0
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	100.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	100.0
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	100.0
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	100.0
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.86
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	99.81
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.77
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	99.55
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	99.55
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	99.43
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	99.41
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	98.85
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	98.27
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	98.24
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	98.22
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	98.14
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	98.02
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	97.72
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	97.58
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	97.57
2f9i_B	285	Acetyl-coenzyme A carboxylase carboxyl transferase	97.56
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	97.37
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	97.06
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	96.91
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	96.9
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	96.75
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	96.65
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	96.55
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	96.39
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	96.31
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	95.36
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	95.25
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	94.91
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	94.85
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	94.02
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	93.92
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	91.71
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	90.95
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	89.18
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	88.68
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	86.76

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=2e-67  Score=523.75  Aligned_cols=312  Identities=36%  Similarity=0.659  Sum_probs=275.9

Q ss_pred             CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCC
Q 015541           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (405)
Q Consensus        64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (405)
                      .++.|.+++ +|+|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||+|+++||+|+|++++......  .
T Consensus         7 ~~e~vl~e~-~~~Va~itLnrP~~~NAl~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~~--~   83 (353)
T 4hdt_A            7 KNEDVLVNV-EGGVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAKA--D   83 (353)
T ss_dssp             -CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHHT--T
T ss_pred             CCCcEEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccch--h
Confidence            467899998 6999999999999999999999999999999999999999999999998999999999998764422  2


Q ss_pred             CCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (405)
Q Consensus       144 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~  223 (405)
                      ......++...+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++| 
T Consensus        84 ~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~iGl~p~~g~~~~l~rl~g-  162 (353)
T 4hdt_A           84 GAEARRFWFDEYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAPG-  162 (353)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHCSSCEEEEECBEEETHHHHHHTTSSEEEECTTCEEECCGGGGTCCCCTTHHHHHHTSST-
T ss_pred             hHHHHHHHHHHHHHHHHHHHCCCCEEEEeECceeecCccccCCcCeeccchhccccCcccccccCCCccceehhhhhhh-
Confidence            3345678888999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHHhcCCCCCcchhhhhHHHHH
Q 015541          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (405)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~i~  303 (405)
                      . ++++|+|||++|+ |+||+++||||+|||++++.+.+.++++.        .+...+..+..... ...+......|+
T Consensus       163 ~-~a~~l~ltG~~i~-A~eA~~~GLv~~vv~~~~l~~~a~~la~~--------~~~~~l~~~~~~~~-~~~l~~~~~~i~  231 (353)
T 4hdt_A          163 K-LGLHAALTGAPFS-GADAIVMGFADHYVPHDKIDEFTRAVIAD--------GVDAALAAHAQEPP-ASPLAEQRSWID  231 (353)
T ss_dssp             T-HHHHHHHHCCCBC-HHHHHHHTSCSEECCGGGHHHHHHHHHHH--------CHHHHHHHHCBCCC-CCHHHHTHHHHH
T ss_pred             H-HHHHHHhcCCCCC-HHHHHHcCCCcEEeCHHHHHHHHHHHHHh--------chhHHHHHhcccCC-ccchHHHHHHHH
Confidence            3 8999999999999 99999999999999999999999998865        24556666654443 456778888999


Q ss_pred             HHcCCcccHHHHHHHHHhccCCccchhhHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhc-----CCcc----------
Q 015541          304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHG-----KTDN----------  368 (405)
Q Consensus       304 ~~f~~~~~ve~i~~~Le~~~~~~~~~~~~wa~~~l~~l~~~SP~sl~vt~~~~~~~~~~~~-----~~e~----------  368 (405)
                      +||+.+ ++++|++.|+...       .+|+.++.+.|.++||+|+++++++++++.....     ..|.          
T Consensus       232 ~~f~~~-~~~~i~~~L~~~~-------~~~a~~~a~~la~~sP~a~~~~k~~l~~~~~~~sl~e~l~~E~~~~~~~~~s~  303 (353)
T 4hdt_A          232 ECYTGD-TVADIIAALRAHD-------APAAGEAADLIATRSPIALSVTLESVRRAAKLQSLEDTLRQEYRVSCASLKSH  303 (353)
T ss_dssp             HHTTCS-SHHHHHHHHHHHC-------SHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHhCCC-CHHHHHHHHHhcc-------cHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhCCc
Confidence            999998 9999999999887       7899999999999999999999999998764210     1111          


Q ss_pred             CCc-----------cCCCCCCCCcCCCCHHHHHhhccCCCC
Q 015541          369 ELS-----------KNPKWNPASLEEVNQSEVEALFEPLGT  398 (405)
Q Consensus       369 ~~~-----------~~P~W~~~sl~~V~~~~v~~~f~~~~~  398 (405)
                      |+.           ++|+|+|+|++||++++|++||.|+++
T Consensus       304 D~~EGvrAfl~dekR~P~w~p~~l~~V~~~~v~~~f~p~~~  344 (353)
T 4hdt_A          304 DLVEGIRAQLVDKDRNPKWRPATLAEVTEADVEAYFAPVDP  344 (353)
T ss_dssp             HHHHHHHHHHC----CCCCSSCSGGGCCHHHHHGGGCCCSS
T ss_pred             hHHHHHhhhhhCcCCCCCCCCCChhhCCHHHHHHHcCCCCC
Confidence            111           289999999999999999999999876

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=100.00  E-value=1.4e-62  Score=496.67  Aligned_cols=323  Identities=30%  Similarity=0.500  Sum_probs=271.6

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhC--C
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD--R  142 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~--~  142 (405)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||+|+++||+|+|++++.......  .
T Consensus        41 ~~~v~~~~-~~~V~~ItLnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~~~  119 (407)
T 3ju1_A           41 FQTLATAS-GKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQ  119 (407)
T ss_dssp             EEEEECTT-SCEEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHTSS
T ss_pred             cceEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhcccccccc
Confidence            45566665 68999999999999999999999999999999999999999999999878999999999987643211  1


Q ss_pred             CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCC
Q 015541          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (405)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G  222 (405)
                      .......++...+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|
T Consensus       120 ~~~~~~~~~~~~~~l~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~G~t~~L~rl~g  199 (407)
T 3ju1_A          120 VTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMPG  199 (407)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCSSCEEEECCSEEETHHHHHHHHCSEEEECTTCEEECGGGGGTCCSCTTHHHHTTTSST
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCccccCcchHHhcCCEEEEcCCCEEeChHhhcCCCCCchHHHHHhhhhH
Confidence            12335678888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH---HHHHHHHHHhcC---CCCCcchhh
Q 015541          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH---QDIVALLAKYSS---DPEGEAPLK  296 (405)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~---~~i~~~l~~~~~---~~~~~~~l~  296 (405)
                       . ++++|+|||++|+ |+||+++||||++||++++.++.++|....+...+.   ..+..+++++..   ...+...+.
T Consensus       200 -~-~A~~l~ltG~~i~-A~eA~~~GLv~~vv~~~~l~~~~~~L~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~l~  276 (407)
T 3ju1_A          200 -K-MGLFLGLTAYHMN-AADACYVGLADHYLNRDDKELMFDAMATLDWSDSPALNHQRLDTMINELSNQVDIPKGDSVLA  276 (407)
T ss_dssp             -T-HHHHHHHHCCCBC-HHHHHHHTSCSEECCGGGHHHHHHHHHSSCCCSCHHHHHHHHHHHHHHHHTTCSSCCCCCHHH
T ss_pred             -H-HHHHHHHcCCcCc-HHHHHHCCCccEEcCHHHHHHHHHHHhcccccccccchhHHHHHHHHHhhhhccccCCchhHH
Confidence             5 8999999999999 999999999999999999999888887654433322   234455554422   233456788


Q ss_pred             hhHHHHHHHcCCcccHHHHHHHHHhccCCccchhhHHHHHHHHHHhccCCchHHHHHHHHHHHhhhh----cCCcc----
Q 015541          297 LLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH----GKTDN----  368 (405)
Q Consensus       297 ~~~~~i~~~f~~~~~ve~i~~~Le~~~~~~~~~~~~wa~~~l~~l~~~SP~sl~vt~~~~~~~~~~~----~~~e~----  368 (405)
                      .....|++||+ + ++++|++.|++...  +   .+|++++++.|.++||+|+++|+++++++....    ...|.    
T Consensus       277 ~~~~~I~~~f~-~-sv~~i~~~L~~~~~--~---~~~a~~~a~~la~~sP~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~  349 (407)
T 3ju1_A          277 ESQEMIDRLMA-G-SLTDIVTRMSTLST--D---EAWLSKACATMLAGSPISWHLAYIQTQLGTKLSLAQCFKWELTVSV  349 (407)
T ss_dssp             HTHHHHHHHTC-S-CHHHHHHHHHHCCC--S---CHHHHHHHHHHHHSCHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc-C-CHHHHHHHHHhccc--c---cHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Confidence            88999999999 6 99999999987531  1   589999999999999999999999999765321    00111    


Q ss_pred             ------C--------C-c--cCCCCCCCCcCCCCHHHHHhhccCCCC
Q 015541          369 ------E--------L-S--KNPKWNPASLEEVNQSEVEALFEPLGT  398 (405)
Q Consensus       369 ------~--------~-~--~~P~W~~~sl~~V~~~~v~~~f~~~~~  398 (405)
                            |        + -  ++|+|+|++++||++++|++||.|.+.
T Consensus       350 ~~~~s~D~~EGvrAflidKdr~P~w~~~~l~~V~~~~v~~~f~~~~~  396 (407)
T 3ju1_A          350 NVCAKGDFCEGVRALLIDKDKQPKWQFADVQSVPNSVIEDILTSPWG  396 (407)
T ss_dssp             HHHHHSSHHHHHHHHTTSCCCCCCCSSSSTTTSCHHHHHHHHSCCC-
T ss_pred             HHhCCHHHHHHHHHHHhcCCcCCCCCCCChHhCCHHHHHHHhCCCCC
Confidence                  1        2 1  389999999999999999999998874

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=100.00  E-value=1.7e-60  Score=475.90  Aligned_cols=322  Identities=38%  Similarity=0.637  Sum_probs=271.3

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      .+.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||+|+++||+|+|++++.....  ...
T Consensus         5 ~~~v~~~~-~~~v~~itLnrP~~~Nal~~~m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~--~~~   81 (363)
T 3bpt_A            5 AEEVLLGK-KGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEK--AKQ   81 (363)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHT--SSC
T ss_pred             CcceEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhcc--ccc
Confidence            34588887 689999999999999999999999999999999999999999999998789999999999865321  112


Q ss_pred             CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                      .....++...+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|. 
T Consensus        82 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~-  160 (363)
T 3bpt_A           82 KIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGK-  160 (363)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHTTTTSSEEEECTTCEEECCGGGTTSCCCTTHHHHHHHSSTT-
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCeEEeCCccccCCCCCchHHHHHHHhhHH-
Confidence            2244567777788899999999999999999999999999999999999999999999999999999999999999994 


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHHhcCC----CCCcchhhhhHH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSD----PEGEAPLKLLLP  300 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~l~~~~~  300 (405)
                       ++++|+|||++|+ |+||+++||||++||++++.+.+.+++..  ...+...++.+++.+...    ......+.....
T Consensus       161 -~a~~l~ltg~~i~-A~eA~~~GLv~~vv~~~~l~~~~~~l~~l--~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~  236 (363)
T 3bpt_A          161 -LGYFLALTGFRLK-GRDVYRAGIATHFVDSEKLAMLEEDLLAL--KSPSKENIASVLENYHTESKIDRDKSFILEEHMD  236 (363)
T ss_dssp             -HHHHHHHHCCCEE-THHHHHTTSCSEECCGGGHHHHHHHHHHC--SSCCHHHHHHHHHHHHHHCCTTTTCCCTTGGGHH
T ss_pred             -HHHHHHHcCCCCC-HHHHHHCCCcceecCHHHHHHHHHHHHhc--ccCCHHHHHHHHHHHHhhhcccCCCchhhHHHHH
Confidence             8999999999999 99999999999999999998877777653  222345677777777531    111345667788


Q ss_pred             HHHHHcCCcccHHHHHHHHHhccCCccchhhHHHHHHHHHHhccCCchHHHHHHHHHHHhhhh----------------c
Q 015541          301 QITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAH----------------G  364 (405)
Q Consensus       301 ~i~~~f~~~~~ve~i~~~Le~~~~~~~~~~~~wa~~~l~~l~~~SP~sl~vt~~~~~~~~~~~----------------~  364 (405)
                      .|++||+.+ ++++|++.|++..       ++|+.++++.|.++||+|+++++++++++....                .
T Consensus       237 ~i~~~f~~~-~~~ei~~al~~~~-------~~~a~~~a~~la~~sP~al~~~k~~l~~~~~~~l~~~l~~E~~~~~~~~~  308 (363)
T 3bpt_A          237 KINSCFSAN-TVEEIIENLQQDG-------SSFALEQLKVINKMSPTSLKITLRQLMEGSSKTLQEVLTMEYRLSQACMR  308 (363)
T ss_dssp             HHHHHTTSS-SHHHHHHHHHHHC-------CHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCC-CHHHHHHHHhccC-------hHHHHHHHHHHHhCCchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence            999999988 9999999998864       689999999999999999999999999865320                0


Q ss_pred             CCcc------CC-c--cCCCCCCCCcCCCCHHHHHhhccCCCCCCCCcc
Q 015541          365 KTDN------EL-S--KNPKWNPASLEEVNQSEVEALFEPLGTGVEELK  404 (405)
Q Consensus       365 ~~e~------~~-~--~~P~W~~~sl~~V~~~~v~~~f~~~~~~~~~l~  404 (405)
                      ..|+      .+ .  ++|+|++++++||++++|++||+|++  +++|.
T Consensus       309 s~D~~EGv~Afl~eK~r~P~~~~~~~~~v~~~~v~~~f~~~~--~~~l~  355 (363)
T 3bpt_A          309 GHDFHEGVRAVLIDKDQSPKWKPADLKEVTEEDLNNHFKSLG--SSDLK  355 (363)
T ss_dssp             SSHHHHHHHHHTTSCCCCCCCSSCSGGGSCHHHHHHHHSCCG--GGSCC
T ss_pred             CccHHhhhhheeeCCCCCCCCCCCChhhCCHHHHHHHhcCCC--ccccc
Confidence            0110      12 1  37999999999999999999999972  35554

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=100.00  E-value=1.4e-54  Score=413.35  Aligned_cols=245  Identities=24%  Similarity=0.277  Sum_probs=215.9

Q ss_pred             EEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCch
Q 015541           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (405)
Q Consensus        68 i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (405)
                      |.+++ +|+|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||+| ++||+|+|++++..      .....
T Consensus         2 vl~E~-~dgVa~itlnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~------~~~~~   73 (254)
T 3hrx_A            2 VLKER-QDGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAG-RAFSAGQDLTEFGD------RKPDY   73 (254)
T ss_dssp             EEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCGGGTTT------SCCCH
T ss_pred             eEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEeCCC-CCcccCccHHHhcc------cchhh
Confidence            56776 699999999999999999999999999999999999999999999997 89999999998754      12344


Q ss_pred             HHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHH
Q 015541          148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG  227 (405)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a  227 (405)
                      ..++...+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.+ ++
T Consensus        74 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~-~A  152 (254)
T 3hrx_A           74 EAHLRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLA-KA  152 (254)
T ss_dssp             HHHTHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHH-HH
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCEeeehhhhhhhccceeeEcCCCEEEchhhCcCcCCcccHHHHHHHHhCcc-hH
Confidence            56777788899999999999999999999999999999999999999999999999999999999999999999997 99


Q ss_pred             HHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHHHH
Q 015541          228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQITSC  305 (405)
Q Consensus       228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~~~  305 (405)
                      ++|+|||++|+ |+||+++||||++||++++.+.+.+++.......|.  ...|++++...... ....++.+...+..+
T Consensus       153 ~~llltg~~i~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~-~~~~l~~e~~~~~~~  230 (254)
T 3hrx_A          153 QELLLLSPRLS-AEEALALGLVHRVVPAEKLMEEALSLAKELAQGPTRAYALTKKLLLETYRLS-LTEALALEAVLQGQA  230 (254)
T ss_dssp             HHHHHHCCCEE-HHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHGGGSC-HHHHHHHHHHHHHHH
T ss_pred             HHHhhcCcccC-HHHHHHCCCeEEecCcHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Confidence            99999999999 999999999999999999999999999885544443  34556665543222 234566667778899


Q ss_pred             cCCcccHHHHHHHHHhcc
Q 015541          306 FSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       306 f~~~~~ve~i~~~Le~~~  323 (405)
                      |.++|..|++.+++|||+
T Consensus       231 ~~s~d~~Eg~~AF~eKR~  248 (254)
T 3hrx_A          231 GQTQDHEEGVRAFREKRP  248 (254)
T ss_dssp             HTSHHHHHHHHHHHTTSC
T ss_pred             hCCHHHHHHHHHHhCCCC
Confidence            999989999999999998

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=3.3e-54  Score=415.08  Aligned_cols=254  Identities=23%  Similarity=0.328  Sum_probs=212.0

Q ss_pred             CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCC
Q 015541           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (405)
Q Consensus        64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (405)
                      ..++|.+++ ++||++||||||+++|+||.+|+.+|.++++.++.|++||+|||||+| ++||+|+|++++..... ...
T Consensus        13 M~e~il~~~-~~gVa~itlnRP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~G-~~FcaG~Dl~~~~~~~~-~~~   89 (274)
T 4fzw_C           13 MMEFILSHV-EKGVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAG-RGFCAGQDLNDRNVDPT-GPA   89 (274)
T ss_dssp             ---CEEEEE-ETTEEEEEECCTTTTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCBCCC----------C
T ss_pred             ccccEEEEE-ECCEEEEEEcCcCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceeCCcChHhhhcccc-ccc
Confidence            356798887 699999999999999999999999999999999999999999999997 89999999998765321 122


Q ss_pred             CCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (405)
Q Consensus       144 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~  223 (405)
                      ......+.+..+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.
T Consensus        90 ~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~  169 (274)
T 4fzw_C           90 PDLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVAGR  169 (274)
T ss_dssp             CCHHHHHHHTHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCGGGTTCCCTTTHHHHHHHHTCH
T ss_pred             hHHHHHHHHHHHHHHHHHHHCCCCEEEEECCceeecCceeeeccceEEECCCCEEECcccCcccCCCccHHHHHHHHhhH
Confidence            23344455556678899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHH
Q 015541          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQ  301 (405)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~  301 (405)
                      . ++++|+|||++|+ |+||+++||||+|||++++.+.+.++++......|.  ..+|+.++..... .....++.+...
T Consensus       170 ~-~A~~llltg~~i~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~l~~~l~~e~~~  246 (274)
T 4fzw_C          170 A-RAMGLALLGNQLS-AEQAHEWGMIWQVVDDETLADTAQQLARHLATQPTFGLGLIKQAINSAETN-TLDTQLDLERDY  246 (274)
T ss_dssp             H-HHHHHHHHCCCEE-HHHHHHTTSSSEEECGGGHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTSS-CHHHHHHHHHHH
T ss_pred             H-HHHHHHHhCCcCC-HHHHHHCCCceEEeChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC-CHHHHHHHHHHH
Confidence            7 9999999999999 999999999999999999999999999885444443  4456666654322 223445566677


Q ss_pred             HHHHcCCcccHHHHHHHHHhcc
Q 015541          302 ITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       302 i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ...++.++|..|++.++++||.
T Consensus       247 ~~~~~~s~d~~Egv~AF~eKR~  268 (274)
T 4fzw_C          247 QRLAGRSADYREGVSAFLAKRS  268 (274)
T ss_dssp             HHHHTTSHHHHHHHHHHHC-CC
T ss_pred             HHHHhcCHHHHHHHHHHhCCCC
Confidence            8889988889999999999987

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=9.8e-54  Score=408.44  Aligned_cols=244  Identities=22%  Similarity=0.287  Sum_probs=213.7

Q ss_pred             EEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCch
Q 015541           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (405)
Q Consensus        68 i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (405)
                      |.+++ +|+|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.| ++||+|+|++++...       ...
T Consensus         7 l~ve~-~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~-------~~~   77 (258)
T 4fzw_A            7 LIVSR-QQRVLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNA-RFFAAGADLNEMAEK-------DLA   77 (258)
T ss_dssp             EEEEE-ETTEEEEEEECGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCS-SEEEECBCHHHHHTC-------CHH
T ss_pred             EEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeCCC-CceeCCCchhhhccc-------hhh
Confidence            77887 699999999999999999999999999999999999999999999997 899999999987641       122


Q ss_pred             HHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHH
Q 015541          148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG  227 (405)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a  227 (405)
                      ..+....+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. ++
T Consensus        78 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~-~A  156 (258)
T 4fzw_A           78 ATLNDTRPQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKS-LA  156 (258)
T ss_dssp             HHHTCSHHHHHHHHHTCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHH-HH
T ss_pred             hHHHhHHHHHHHHHHHCCCCEEEEEcCcceeeeeEeecccceEEECCCCEEECcccCCCcCCCchHHHHHHHHhCHH-HH
Confidence            33444456788899999999999999999999999999999999999999999999999999999999999999997 99


Q ss_pred             HHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHHHH
Q 015541          228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQITSC  305 (405)
Q Consensus       228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~~~  305 (405)
                      ++|+|||++++ |+||+++||||++||++++.+.+.+++.......|.  ...|+.++..... .....++.+...+..+
T Consensus       157 ~~llltg~~i~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~-~l~~~l~~e~~~~~~~  234 (258)
T 4fzw_A          157 SKMVLSGESIT-AQQAQQAGLVSDVFPSDLTLEYALQLASKMARHSPLALQAAKQALRQSQEV-ALQAGLAQERQLFTLL  234 (258)
T ss_dssp             HHHHHHCCCEE-HHHHHHHTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCcCc-HHHHHHCCCeeEEeCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHH
Confidence            99999999999 999999999999999999999999999885444443  4456666654322 2234566677788999


Q ss_pred             cCCcccHHHHHHHHHhcc
Q 015541          306 FSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       306 f~~~~~ve~i~~~Le~~~  323 (405)
                      |.++|..|++.++++|++
T Consensus       235 ~~s~d~~Eg~~AF~eKR~  252 (258)
T 4fzw_A          235 AATEDRHEGISAFLQKRT  252 (258)
T ss_dssp             HTSHHHHHHHHHHHTTSC
T ss_pred             hcCHHHHHHHHHHhCCCC
Confidence            999989999999999987

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=100.00  E-value=1.2e-52  Score=402.46  Aligned_cols=252  Identities=20%  Similarity=0.269  Sum_probs=219.3

Q ss_pred             CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCC
Q 015541           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (405)
Q Consensus        64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (405)
                      .++.|.++..+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++...     .
T Consensus         6 ~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~-----~   80 (265)
T 3kqf_A            6 QLQNISVDYATPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGM-----N   80 (265)
T ss_dssp             -CCSEEEECCSTTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTC-----C
T ss_pred             cCCeEEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhcc-----C
Confidence            46779888237999999999999999999999999999999999999999999999988999999999987641     1


Q ss_pred             CCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (405)
Q Consensus       144 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~  223 (405)
                      ......++...+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~  160 (265)
T 3kqf_A           81 EEQVRHAVSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGV  160 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCcEEECcccccCcCCCccHHHHHHHHhCH
Confidence            22344567777889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHH
Q 015541          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQ  301 (405)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~  301 (405)
                      . ++++|++||++++ |+||+++||||++||++++.+.+.+++.......|.  ..+|+.++..... .....++.+...
T Consensus       161 ~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~-~l~~~l~~e~~~  237 (265)
T 3kqf_A          161 G-RAKELIYTGRRIS-AQEAKEYGLVEFVVPVHLLEEKAIEIAEKIASNGPIAVRLAKEAISNGIQV-DLHTGLQMEKQA  237 (265)
T ss_dssp             H-HHHHHHHHCCCEE-HHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHH
T ss_pred             H-HHHHHHHcCCCCC-HHHHHHCCCccEEeCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC-CHHHHHHHHHHH
Confidence            7 9999999999999 999999999999999999999999999885544443  4456666554322 223455666777


Q ss_pred             HHHHcCCcccHHHHHHHHHhcc
Q 015541          302 ITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       302 i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      +..+|.+++..|++.++++|+.
T Consensus       238 ~~~~~~s~d~~eg~~af~ekr~  259 (265)
T 3kqf_A          238 YEGVIHTKDRLEGLQAFKEKRT  259 (265)
T ss_dssp             HHHHHTCHHHHHHHHHHHTTSC
T ss_pred             HHHHhCCHHHHHHHHHHHcCCC
Confidence            8899999989999999999987

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=100.00  E-value=1.1e-51  Score=396.20  Aligned_cols=252  Identities=18%  Similarity=0.209  Sum_probs=216.1

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.| ++||+|+|++++.....  ...
T Consensus         3 ~~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~--~~~   78 (268)
T 3i47_A            3 LSDLLYEI-QDKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANG-KHFSAGADLTWMQSMAN--FTE   78 (268)
T ss_dssp             CCSEEEEE-ETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECS-SCSBCSBCHHHHHHHHT--CCH
T ss_pred             CCEEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCC-CCeeCCCChhhhhcccc--ccH
Confidence            56788887 699999999999999999999999999999999999999999999998 89999999999876321  111


Q ss_pred             CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                      .....+....+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ +|+|++|..
T Consensus        79 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~  157 (268)
T 3i47_A           79 EENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISP-YVVRAIGER  157 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHH-HHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEhHhHHHHHhCCEEEEcCCCEEECcccccCCCcccHHH-HHHHHhCHH
Confidence            1122345566788899999999999999999999999999999999999999999999999999999988 788999997


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQI  302 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i  302 (405)
                       ++++|+|||++|+ |+||+++||||++||.+++.+.+.++++......|.  ...|++++...........++.+...+
T Consensus       158 -~A~~llltg~~i~-A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~~e~~~~  235 (268)
T 3i47_A          158 -AAKMLFMSAEVFD-ATRAYSLNLVQHCVPDDTLLEFTLKYASQISNNAPEAVKNSKQLAQYVANKKIDEELVRYTASLI  235 (268)
T ss_dssp             -HHHHHHHHCCEEE-HHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred             -HHHHHHHcCCccC-HHHHHHcCCCcEeeChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCChhHHHHHHHHHHH
Confidence             9999999999999 999999999999999999999999999885544443  455666665433333222455666778


Q ss_pred             HHHcCCcccHHHHHHHHHhcc
Q 015541          303 TSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       303 ~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ..+|.+++..|++.++++|+.
T Consensus       236 ~~~~~s~d~~eg~~AF~ekR~  256 (268)
T 3i47_A          236 AHKRVSDEGQEGLKAFLNKEI  256 (268)
T ss_dssp             HHHHHSHHHHHHHHHHHHTCC
T ss_pred             HHHhcCHHHHHHHHHHHcCCC
Confidence            889999889999999999998

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=100.00  E-value=3.4e-51  Score=395.21  Aligned_cols=255  Identities=21%  Similarity=0.287  Sum_probs=219.1

Q ss_pred             CCCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCC
Q 015541           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (405)
Q Consensus        63 ~~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (405)
                      +.++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++...... .
T Consensus        14 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~-~   90 (279)
T 3g64_A           14 PEWRHLRVEI-TDGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEG-RGFCSGGDVDEIIGATLS-M   90 (279)
T ss_dssp             SCCSSEEEEE-ETTEEEEEESCGGGTTCBCHHHHHHHHHHHHHHHHTTCCSEEEEEECS-SCSBCCBCTTTTHHHHTT-C
T ss_pred             CCCCeEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceecCcCHHHHhhcccc-c
Confidence            3467799988 699999999999999999999999999999999999999999999998 899999999998764311 1


Q ss_pred             CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCcccccccc-CCccHHHHHhcCC
Q 015541          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLF-PDVGFSYIAAKGP  221 (405)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~-P~~G~~~~L~r~~  221 (405)
                      .......+....+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ |++|++++|+|++
T Consensus        91 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~p~~g~~~~l~r~v  170 (279)
T 3g64_A           91 DTARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAAYLLPRVV  170 (279)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCSCCTTHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeccccHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchhHHHHHHHHh
Confidence            111223455666788999999999999999999999999999999999999999999999999999 9999999999999


Q ss_pred             ChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhH
Q 015541          222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLL  299 (405)
Q Consensus       222 G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~  299 (405)
                      |.. ++++|++||++++ |+||+++||||++||++++.+.+.++++......|.  ..+|+.++.... ......++.+.
T Consensus       171 G~~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~l~~~~~~e~  247 (279)
T 3g64_A          171 GLG-HATRLLMLGDTVR-APEAERIGLISELTEEGRADEAARTLARRLADGPALAHAQTKALLTAELD-MPLAAAVELDA  247 (279)
T ss_dssp             CHH-HHHHHHHHCCCEE-HHHHHHHTCCSEECCTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTT-SCHHHHHHHHH
T ss_pred             CHH-HHHHHHHcCCCcC-HHHHHHCCCCCEecCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc-CCHHHHHHHHH
Confidence            997 9999999999999 999999999999999999999999999885544443  445666655432 22234455666


Q ss_pred             HHHHHHcCCcccHHHHHHHHHhcc
Q 015541          300 PQITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       300 ~~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ..+..+|.+++..|++.++++|+.
T Consensus       248 ~~~~~~~~s~d~~eg~~af~ekr~  271 (279)
T 3g64_A          248 STQALLMTGEDYAEFHAAFTEKRP  271 (279)
T ss_dssp             HHHHHHTTSHHHHHHHHHHHTTSC
T ss_pred             HHHHHHhcCHHHHHHHHHHhcCCC
Confidence            778899999989999999999987

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=100.00  E-value=3.6e-52  Score=403.25  Aligned_cols=261  Identities=17%  Similarity=0.128  Sum_probs=220.1

Q ss_pred             CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhh----
Q 015541           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQ----  139 (405)
Q Consensus        64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~----  139 (405)
                      .++.|.++. +++|++||||||+ +|+||.+|+.+|.++++.++.|++||+|||||+|+++||+|+|++++.....    
T Consensus         7 ~~~~i~~~~-~~~va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~   84 (287)
T 3gkb_A            7 AYSTLRVSS-EHGVARIILDNPP-VNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQEL   84 (287)
T ss_dssp             CCSSEEEEE-ETTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHHHH
T ss_pred             CCCeEEEEE-ECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccchh
Confidence            466798987 6999999999999 7999999999999999999999999999999998889999999998863210    


Q ss_pred             hCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeC-CeeeeCccccccccCCccHHHHHh
Q 015541          140 KDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE-KTLLAMPENGIGLFPDVGFSYIAA  218 (405)
Q Consensus       140 ~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate-~a~f~~PE~~iGl~P~~G~~~~L~  218 (405)
                      ....    ..++...+.++..|.++||||||+|||+|+|||++|+++||+|||++ +++|++||+++|++|++|++++|+
T Consensus        85 ~~~~----~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~  160 (287)
T 3gkb_A           85 AASA----PADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLR  160 (287)
T ss_dssp             HHTS----CTTCCTTHHHHHHHHHCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECGGGGGTSCCCSSHHHHHH
T ss_pred             hHHH----HHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCCchHHHHHH
Confidence            0000    11122345677889999999999999999999999999999999999 999999999999999999999999


Q ss_pred             cCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHHhcCCCCCcchhhhh
Q 015541          219 KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLL  298 (405)
Q Consensus       219 r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~  298 (405)
                      |++|.. ++++|+|||++|+ |+||+++||||++||++++.+.+.++++..... |+.++...++.+.... ....++.+
T Consensus       161 r~vG~~-~A~ellltG~~i~-A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~-~p~a~~~~K~~l~~~~-~~~~l~~e  236 (287)
T 3gkb_A          161 GRVGRN-RALEVVLTADLFD-AETAASYGWINRALPADELDEYVDRVARNIAAL-PDGVIEAAKRSLPADD-LKEGLLGE  236 (287)
T ss_dssp             HHHCHH-HHHHHHHHCCCEE-HHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTS-CTTHHHHHHHHSCCCC-CHHHHHHH
T ss_pred             HHhCHH-HHHHHHHcCCCCC-HHHHHHCCCCcEEeChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHccC-HHHHHHHH
Confidence            999997 9999999999999 999999999999999999999999999875444 4445655555554432 23456667


Q ss_pred             HHHHHHHcCCcccHHHHHHHHHhccCCccchhhHHHHHHHH
Q 015541          299 LPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQ  339 (405)
Q Consensus       299 ~~~i~~~f~~~~~ve~i~~~Le~~~~~~~~~~~~wa~~~l~  339 (405)
                      ...+..+|.+++..|++.++++++.+.     |+|..+.-+
T Consensus       237 ~~~~~~~~~s~d~~eg~~AF~ekr~~~-----P~f~~~l~~  272 (287)
T 3gkb_A          237 NDAWAATFSLPAAQQLISGGLKDGAQT-----PAGERDLEG  272 (287)
T ss_dssp             HHHHHHHHTSHHHHHHHHHHHHTTTTS-----HHHHHTHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHhcCCCC-----CchhhhHHH
Confidence            778899999998999999999998632     789765433

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=100.00  E-value=1.4e-51  Score=396.72  Aligned_cols=254  Identities=20%  Similarity=0.235  Sum_probs=215.3

Q ss_pred             CCCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCC
Q 015541           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (405)
Q Consensus        63 ~~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (405)
                      +.++.|.++. +++|++||||||+++|+||.+|+.+|.++++.+  |+++|+|||||+| ++||+|+|++++..     .
T Consensus        13 m~~~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~--d~~vr~vVltg~g-~~F~aG~Dl~~~~~-----~   83 (275)
T 3hin_A           13 ADPSTLVVDT-VGPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHGIG-DHFSAGLDLSELRE-----R   83 (275)
T ss_dssp             CCGGGEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHTSSC--CTTCCEEEEEESS-SCSBCCBCGGGCCC-----C
T ss_pred             CCCCeEEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHh--CcCceEEEEECCC-CCccCCCCHHHHhc-----c
Confidence            4467799987 699999999999999999999999999999998  6799999999998 89999999998754     1


Q ss_pred             CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCC
Q 015541          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (405)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G  222 (405)
                      .......+....+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG  163 (275)
T 3hin_A           84 DATEGLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPRLIG  163 (275)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHC
T ss_pred             ChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhC
Confidence            11122334556677888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHH
Q 015541          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLP  300 (405)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~  300 (405)
                      .. ++++|+|||++|+ |+||+++||||++||++++.+.+.++++......|.  ..+|+.++..... .....+..+..
T Consensus       164 ~~-~A~~l~ltG~~i~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a~~~~K~~l~~~~~~-~~~~~l~~e~~  240 (275)
T 3hin_A          164 VA-RMADMMLTGRVYS-AAEGVVHGFSQYLIENGSAYDKALELGNRVAQNAPLTNFAVLQALPMIAEA-NPQTGLLMESL  240 (275)
T ss_dssp             HH-HHHHHHHHCCCEE-HHHHHHHTSCSEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHTHHHHHHHS-CHHHHHHHHHH
T ss_pred             HH-HHHHHHHcCCCCC-HHHHHHCCCCCEEeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcC-CHHHHHHHHHH
Confidence            97 9999999999999 999999999999999999999999999885444443  3455555543222 22344555666


Q ss_pred             HHHHHcCCcccHHHHHHHHHhccCCccchhhHHHH
Q 015541          301 QITSCFSSEKSVRQIIEELKKHQSSAETSVAQWAD  335 (405)
Q Consensus       301 ~i~~~f~~~~~ve~i~~~Le~~~~~~~~~~~~wa~  335 (405)
                      .+..++.+++..|++.++++|+.       +.|..
T Consensus       241 ~~~~~~~s~d~~eg~~AF~ekR~-------p~f~~  268 (275)
T 3hin_A          241 MATVAQSDQEAKTRIRAFLDHKT-------AKVRE  268 (275)
T ss_dssp             HHHHHHHSHHHHHHHHHHHHHHH-------HHC--
T ss_pred             HHHHHhCCHHHHHHHHHHHcCCC-------CCCCC
Confidence            78888988889999999999998       77743

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=100.00  E-value=2.6e-51  Score=392.32  Aligned_cols=249  Identities=21%  Similarity=0.263  Sum_probs=211.9

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      ++.|.++. +++|++||||||++ |+||.+|+.+|.++++.++.|+++|+|||||+| ++||+|+|++++...    ...
T Consensus         5 ~~~v~~~~-~~~v~~itlnrp~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~----~~~   77 (261)
T 3pea_A            5 LKFLSVRV-EDHIAVATLNHAPA-NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEG-RFFSAGADIKEFTSV----TEA   77 (261)
T ss_dssp             CSSEEEEE-ETTEEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCGGGSSTT----CCH
T ss_pred             ccceEEEE-ECCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceeCCcCHHHHhhc----Cch
Confidence            56788887 69999999999999 999999999999999999999999999999998 899999999987541    111


Q ss_pred             CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                      .....+....+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~  157 (261)
T 3pea_A           78 KQATELAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQRLPRYVGKA  157 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHH
Confidence            12233444445688899999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHHhcCCCC--CcchhhhhHHHH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPE--GEAPLKLLLPQI  302 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~--~~~~l~~~~~~i  302 (405)
                       ++++|++||++++ |+||+++||||++||++++.+.+.+++.... ..|..++...++.+.....  ....++.+...+
T Consensus       158 -~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la-~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~  234 (261)
T 3pea_A          158 -KACEMMLTSTPIT-GAEALKWGLVNGVFAEETFLDDTLKVAKQIA-GKSPATARAVLELLQTTKSSHYYEGVQREAQIF  234 (261)
T ss_dssp             -HHHHHHHHCCCEE-HHHHHHHTSSSEEECGGGHHHHHHHHHHHHH-TSCHHHHHHHHHHHGGGCCHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHcCCCCC-HHHHHHCCCccEecCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence             9999999999999 9999999999999999999999999998754 4454445444444432221  123345566678


Q ss_pred             HHHcCCcccHHHHHHHHHhcc
Q 015541          303 TSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       303 ~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ..+|.+++..|++.++++|+.
T Consensus       235 ~~~~~s~d~~eg~~af~ekr~  255 (261)
T 3pea_A          235 GEVFTSEDGREGVAAFLEKRK  255 (261)
T ss_dssp             HHHHHSHHHHHHHHHHHTTSC
T ss_pred             HHHhCCHHHHHHHHHHHcCCC
Confidence            889989889999999999987

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=100.00  E-value=7.9e-51  Score=389.99  Aligned_cols=255  Identities=22%  Similarity=0.300  Sum_probs=207.4

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..........
T Consensus         4 ~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~   81 (266)
T 3fdu_A            4 HPHLNANL-EGGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAE-HDFTAGNDMKDFMGFVQNPNAG   81 (266)
T ss_dssp             CTTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCBCHHHHHHHHHSCCCS
T ss_pred             CCeEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CCeECCcCHHHHhhhccccchh
Confidence            45688887 699999999999999999999999999999999999999999999998 8999999999987322111111


Q ss_pred             CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                      .   .+....+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus        82 ~---~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~  158 (266)
T 3fdu_A           82 P---AGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAGYH  158 (266)
T ss_dssp             C---GGGSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEECTTCEEECCTTTTTCCCCTTHHHHHHHHHCHH
T ss_pred             h---HHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECchhhhCCCCcchHHHHHHHHhCHH
Confidence            1   1234456778899999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHHhcCCC-CCcchhhhhHHHHH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDP-EGEAPLKLLLPQIT  303 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~l~~~~~~i~  303 (405)
                       ++++|++||++++ |+||+++||||++||  ++.+.+.++++.. +..|..++...++.+.... .....++.+...+.
T Consensus       159 -~A~~l~ltg~~i~-A~eA~~~GLv~~vv~--~l~~~a~~~a~~l-a~~~~~a~~~~K~~l~~~~~~l~~~l~~e~~~~~  233 (266)
T 3fdu_A          159 -KAAELLFTAKKFN-AETALQAGLVNEIVE--DAYATAQATAQHL-TALPLASLKQTKALMKHDLDQIIECIDHEAEIFM  233 (266)
T ss_dssp             -HHHHHHHHCCEEC-HHHHHHTTSCSEECS--CHHHHHHHHHHHH-HTSCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHhCCCcC-HHHHHHCCCHHHHHH--HHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhhhccHHHHHHHHHHHHH
Confidence             9999999999999 999999999999999  8999999999874 4445545555554443321 11223445666788


Q ss_pred             HHcCCcccHHHHHHHHHhccCCccchhhHHHHH
Q 015541          304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWADE  336 (405)
Q Consensus       304 ~~f~~~~~ve~i~~~Le~~~~~~~~~~~~wa~~  336 (405)
                      .+|.+++..|++.++++|++       +.|...
T Consensus       234 ~~~~s~d~~eg~~aF~ekR~-------p~~~~~  259 (266)
T 3fdu_A          234 QRVQSPEMLEAVQAFMQKRQ-------PDFSQE  259 (266)
T ss_dssp             HHHTCHHHHHHHHHHC-----------------
T ss_pred             HHhCCHHHHHHHHHHHcCCC-------CCCCCC
Confidence            99999989999999999998       677543

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=100.00  E-value=1.3e-50  Score=390.28  Aligned_cols=255  Identities=20%  Similarity=0.275  Sum_probs=212.2

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      ++.|.++..+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..........
T Consensus         2 ~~~v~~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~~~~   80 (275)
T 1dci_A            2 YESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAG-KMFTSGIDLMDMASDILQPPGD   80 (275)
T ss_dssp             CSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEEST-TCSBCCBCHHHHHHHHTSCCCS
T ss_pred             CceEEEEEcCCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccCCcChHHHhhcccccccc
Confidence            456888875688999999999999999999999999999999999999999999997 8999999999986532111000


Q ss_pred             C------chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHh
Q 015541          145 P------LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAA  218 (405)
Q Consensus       145 ~------~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~  218 (405)
                      .      ....+....+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~  160 (275)
T 1dci_A           81 DVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLP  160 (275)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGG
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHH
Confidence            1      1123344456778899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCh-HHHHHHHHhcCCCCCcHHHHHHcCccceecCC-CChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcch
Q 015541          219 KGPGG-GSVGAYLGMTGKRISTPSDALFAGLGTDYVPS-GNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAP  294 (405)
Q Consensus       219 r~~G~-~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~  294 (405)
                      |++|. . ++++|++||++++ |+||+++||||++||+ +++.+.+.++++......|.  ..+|.+++..... .....
T Consensus       161 r~vG~~~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~-~~~~~  237 (275)
T 1dci_A          161 KVIGNRS-LVNELTFTARKMM-ADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQGSKINLIYSRDH-SVDES  237 (275)
T ss_dssp             GTCSCHH-HHHHHHHHCCEEE-HHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHS-CHHHH
T ss_pred             HHhCcHH-HHHHHHHcCCCCC-HHHHHHcCCcceecCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHH
Confidence            99998 7 9999999999999 9999999999999999 89999999998875444443  3455555543221 11234


Q ss_pred             hhhhHHHHHHHcCCcccHHHHHHHHHh---cc
Q 015541          295 LKLLLPQITSCFSSEKSVRQIIEELKK---HQ  323 (405)
Q Consensus       295 l~~~~~~i~~~f~~~~~ve~i~~~Le~---~~  323 (405)
                      ++.+...+..+|.+++..|++.+++++   +.
T Consensus       238 l~~e~~~~~~~~~s~d~~eg~~af~ek~~~r~  269 (275)
T 1dci_A          238 LDYMATWNMSMLQTQDIIKSVQAAMEKKDSKS  269 (275)
T ss_dssp             HHHHHHHHHHHTSSHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCC
Confidence            555566678889988899999999998   65

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=100.00  E-value=4.3e-51  Score=391.25  Aligned_cols=253  Identities=17%  Similarity=0.239  Sum_probs=212.6

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCc-ccCCChhhHHHhhhhCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAF-CAGMDIKGVVAEIQKDRN  143 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~F-caG~Dl~~~~~~~~~~~~  143 (405)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++| |+|+|++++..... ...
T Consensus         3 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FF~aG~Dl~~~~~~~~-~~~   79 (263)
T 3lke_A            3 LSYVHTEI-QNDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKH-RAYFSSGPRLEDLLICAS-DQS   79 (263)
T ss_dssp             CCSEEEEE-CSSEEEEEECCGGGTTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEESC-TTEEECBSCHHHHHHHHH-CSS
T ss_pred             CcEEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcCC-CceEecCcCHHHHHhhcc-cCC
Confidence            46688887 699999999999999999999999999999999999999999999998 788 99999999876221 112


Q ss_pred             CCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (405)
Q Consensus       144 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~  223 (405)
                      ......++...+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vG~  159 (263)
T 3lke_A           80 DVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIGY  159 (263)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHGGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEcCCCEEeCchHhhCCCCCccHHHHHHHHhCH
Confidence            23345577778889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecC-CCChHHHHHHHHHhhcCCCcHHHHHHHHHHhcCCC--CCcchhhhhHH
Q 015541          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVP-SGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDP--EGEAPLKLLLP  300 (405)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~-~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~l~~~~~  300 (405)
                      . ++++|++||++++ |+||+++||||++|| .+++.+.+.++++... ..|..++...++.+....  .....++.+..
T Consensus       160 ~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la-~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~  236 (263)
T 3lke_A          160 E-QTMNLLLEGKLFT-SEEALRLGLIQEICENKQELQERVKNYLKAVS-EGYVPAIAATKKLLKGKAAEELKQQLEQETE  236 (263)
T ss_dssp             H-HHHHHHHHCCCEE-HHHHHHHTSSSEEESSHHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHhCCCcC-HHHHHHcCCCcEecCChhHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhhhcCHHHHHHHHHH
Confidence            7 9999999999999 999999999999999 8999999999998744 444444444444433221  11234556667


Q ss_pred             HHHHHcCCcccHHHHHHHHHhcc
Q 015541          301 QITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       301 ~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      .+..+|.++|..|+|-+++|+++
T Consensus       237 ~~~~~~~s~d~~e~~~~~~~~~~  259 (263)
T 3lke_A          237 ELVALFKQTEIKKRLEALVEGHH  259 (263)
T ss_dssp             HHHHHTTSHHHHHHHHHC-----
T ss_pred             HHHHHhcCHHHHHHHHhhhccCC
Confidence            78999999989999999999887

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=100.00  E-value=4.8e-51  Score=393.64  Aligned_cols=249  Identities=22%  Similarity=0.281  Sum_probs=211.7

Q ss_pred             CCCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCC
Q 015541           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (405)
Q Consensus        63 ~~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (405)
                      +.++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....    
T Consensus        22 m~~~~v~~~~-~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~----   95 (278)
T 3h81_A           22 MTYETILVER-DQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSA-KAFAAGADIKEMADLT----   95 (278)
T ss_dssp             -CCSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCS-SEEECCBCSHHHHTCC----
T ss_pred             CCCCeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CCeecCcCHHHHhccC----
Confidence            3467799987 689999999999999999999999999999999999999999999975 8999999999986521    


Q ss_pred             CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCC
Q 015541          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (405)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G  222 (405)
                         ....++...+..+..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|
T Consensus        96 ---~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG  172 (278)
T 3h81_A           96 ---FADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIG  172 (278)
T ss_dssp             ---HHHHHHHTTTGGGHHHHTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHC
T ss_pred             ---hhhHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEcCCCEEECchhhcCcCCCccHHHHHHHHhC
Confidence               11122233333367899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHH
Q 015541          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLP  300 (405)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~  300 (405)
                      .. ++++|++||++++ |+||+++||||++||++++.+.+.++++......|.  ..+|++++.... ......++.+..
T Consensus       173 ~~-~A~~l~ltG~~~~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~-~~l~~~l~~e~~  249 (278)
T 3h81_A          173 KA-KAMDLILTGRTMD-AAEAERSGLVSRVVPADDLLTEARATATTISQMSASAARMAKEAVNRAFE-SSLSEGLLYERR  249 (278)
T ss_dssp             HH-HHHHHHHHCCCEE-HHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTT-SCHHHHHHHHHH
T ss_pred             HH-HHHHHHHhCCCcC-HHHHHHCCCccEEeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc-CCHHHHHHHHHH
Confidence            87 9999999999999 999999999999999999999999999885444443  344555554322 222344556677


Q ss_pred             HHHHHcCCcccHHHHHHHHHhcc
Q 015541          301 QITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       301 ~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      .+..+|.++|..|++.++++|+.
T Consensus       250 ~~~~~~~s~d~~eg~~AF~ekR~  272 (278)
T 3h81_A          250 LFHSAFATEDQSEGMAAFIEKRA  272 (278)
T ss_dssp             HHHHHTTSHHHHHHHHHHHTTSC
T ss_pred             HHHHHhCCHHHHHHHHHHHcCCC
Confidence            78899999989999999999987

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=100.00  E-value=1.2e-50  Score=386.46  Aligned_cols=242  Identities=21%  Similarity=0.254  Sum_probs=210.8

Q ss_pred             ccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCC
Q 015541           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (405)
Q Consensus        66 ~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (405)
                      +.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..         
T Consensus         6 ~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~---------   74 (255)
T 3p5m_A            6 NGISVEH-DGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAG-RAFCSGGDLTGGDT---------   74 (255)
T ss_dssp             TTEEEEE-ETTEEEEEECCGGGTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCEECC---CH---------
T ss_pred             ceEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CCccCCCChhhhcc---------
Confidence            4588887 699999999999999999999999999999999999999999999998 89999999998752         


Q ss_pred             chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHH
Q 015541          146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  225 (405)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~  225 (405)
                        ..+....+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. 
T Consensus        75 --~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~-  151 (255)
T 3p5m_A           75 --AGAADAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRA-  151 (255)
T ss_dssp             --HHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECGGGGGTCCCCTTHHHHTHHHHCHH-
T ss_pred             --hHHHHHHHHHHHHHHhCCCCEEEEeCCeehhhHHHHHHHCCEEEEcCCcEEeCcccccCcCCCccHHHHHHHHhCHH-
Confidence              13455566888899999999999999999999999999999999999999999999999999999999999999997 


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHH
Q 015541          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (405)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~  303 (405)
                      ++++|++||++++ |+||+++||||++||++++.+.+.+++.......|.  ..+|+.++..... .....++.+...+.
T Consensus       152 ~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~l~~~l~~e~~~~~  229 (255)
T 3p5m_A          152 RTSRMAMTAEKIS-AATAFEWGMISHITSADEYESVLTDVLRSVSGGPTLAFGWTKRALAAATLA-ELEPVQAIEAEGQL  229 (255)
T ss_dssp             HHHHHHHHCCCEE-HHHHHHTTSCSEECCTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHCT-THHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcC-HHHHHHCCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHH
Confidence            9999999999999 999999999999999999999999999885444443  4456666554332 22344566677788


Q ss_pred             HHcCCcccHHHHHHHHHhcc
Q 015541          304 SCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       304 ~~f~~~~~ve~i~~~Le~~~  323 (405)
                      .+|.+++..|++.++++++.
T Consensus       230 ~~~~s~d~~eg~~af~ekr~  249 (255)
T 3p5m_A          230 ALVETADFREGARAFRERRT  249 (255)
T ss_dssp             HHTTSHHHHHHHHHHHTTSC
T ss_pred             HHhCCHHHHHHHHHHHcCCC
Confidence            99999989999999999987

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=100.00  E-value=2.4e-51  Score=392.95  Aligned_cols=248  Identities=20%  Similarity=0.266  Sum_probs=211.6

Q ss_pred             CCccEEEEEeeCc-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCC
Q 015541           64 AEEFVKGNVHPNG-VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (405)
Q Consensus        64 ~~~~i~~~~~~~~-v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (405)
                      .++.|.++.. ++ |++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....    
T Consensus         7 ~~~~i~~~~~-~~gv~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~----   80 (263)
T 3moy_A            7 TYTTIATSRP-VAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSE-RAFAAGADIAEMVTLT----   80 (263)
T ss_dssp             CCSSEEEECC-STTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCS-SEEEESBCHHHHTTCC----
T ss_pred             CCCeEEEEEe-CCeEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCeeCCcChHHHhccC----
Confidence            3567888874 55 999999999999999999999999999999999999999999975 8999999999876411    


Q ss_pred             CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCC
Q 015541          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (405)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G  222 (405)
                         ....+......++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus        81 ---~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG  157 (263)
T 3moy_A           81 ---PHQARERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVG  157 (263)
T ss_dssp             ---HHHHHHTTTTHHHHHHTTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCSSSTTTHHHHHHC
T ss_pred             ---chhHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHHCCEEEecCCCEEeCcccccCCCCchhHHHHHHHHhC
Confidence               11122223345677899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHH
Q 015541          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLP  300 (405)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~  300 (405)
                      .. ++++|++||++++ |+||+++||||++||++++.+.+.+++.......|.  ..+|+.++.... ......++.+..
T Consensus       158 ~~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~l~~~l~~e~~  234 (263)
T 3moy_A          158 KA-KAMDLCLTGRSLT-AEEAERVGLVSRIVPAADLLDEALAVAQRIARMSRPAGRAVKDAINEAFE-RPLSAGMRYERD  234 (263)
T ss_dssp             HH-HHHHHHHHCCEEE-HHHHHHTTSCSEEECGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTT-SCHHHHHHHHHH
T ss_pred             HH-HHHHHHHcCCCCC-HHHHHHCCCccEecCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhc-CCHHHHHHHHHH
Confidence            97 9999999999999 999999999999999999999999998875444443  445555555422 222344566677


Q ss_pred             HHHHHcCCcccHHHHHHHHHhcc
Q 015541          301 QITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       301 ~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      .+..+|.+++..|++.++++|+.
T Consensus       235 ~~~~~~~s~d~~eg~~AF~ekR~  257 (263)
T 3moy_A          235 AFYAMFDTHDQTEGMTAFLEKRT  257 (263)
T ss_dssp             HHHHHTTSHHHHHHHHHHHTTSC
T ss_pred             HHHHHhCCHHHHHHHHHHHhCCC
Confidence            78999999989999999999987

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=100.00  E-value=1.3e-51  Score=401.25  Aligned_cols=262  Identities=20%  Similarity=0.233  Sum_probs=176.9

Q ss_pred             CCCccEEEEEeeC-cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHh--hh
Q 015541           63 GAEEFVKGNVHPN-GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAE--IQ  139 (405)
Q Consensus        63 ~~~~~i~~~~~~~-~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~--~~  139 (405)
                      ..++.|.++. ++ +|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||+| ++||+|+|++++...  ..
T Consensus        26 ~~~~~v~~~~-~~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G-~~FcaG~Dl~~~~~~~~~~  103 (298)
T 3qre_A           26 DAQDAVLYEA-TPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRG-RGFCAGAYLGSADAAAGYD  103 (298)
T ss_dssp             --CCSEEEEE-CTTSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSEECC------------
T ss_pred             CCCCeEEEEE-eCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCcccCcCHHHHhhccccc
Confidence            3467899988 57 9999999999999999999999999999999999999999999998 899999999988641  10


Q ss_pred             hCCCC-CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHh
Q 015541          140 KDRNT-PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAA  218 (405)
Q Consensus       140 ~~~~~-~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~  218 (405)
                      ..... .....+....+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~  183 (298)
T 3qre_A          104 KTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILP  183 (298)
T ss_dssp             -----------------CCTTGGGGSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECCCCHHHHHCTTSHHHHHH
T ss_pred             cccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCceeecchHHHhhCCEEEEcCCCEEECcccccCCCcchhHHHHHH
Confidence            00000 01111222234566788999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCC-CcH--HHHHHHHHHhcCCCCCcchh
Q 015541          219 KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSE-DPH--QDIVALLAKYSSDPEGEAPL  295 (405)
Q Consensus       219 r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~-~~~--~~i~~~l~~~~~~~~~~~~l  295 (405)
                      |++|.. ++++|++||++++ |+||+++||||+|||.+++.+.+.+++...... .|.  ..+|+.++...... ....+
T Consensus       184 r~vG~~-~A~ellltg~~i~-A~eA~~~GLV~~vv~~~~l~~~a~~~A~~la~~~~p~a~~~~K~~l~~~~~~~-l~~~~  260 (298)
T 3qre_A          184 RLTSWA-VALDLLLSGRTFL-AEEAAQLGLVKEVVTPEQLMPRALEYAEDIARYCSPSSMAVIKRQVYGDATRD-VVEAT  260 (298)
T ss_dssp             HHSCHH-HHHHHHHHCCEEE-HHHHHHTTSCSEEECGGGHHHHHHHHHHHHHHHSCHHHHHHHHHHHHGGGGC-------
T ss_pred             HhcCHH-HHHHHHHcCCCCC-HHHHHHcCCCeEecCHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhhcCC-HHHHH
Confidence            999997 9999999999999 999999999999999999999999999885544 333  44555555533222 12334


Q ss_pred             hhhHHHHHHHcCCcccHHHHHHHHHhccCCccchhhHHHHH
Q 015541          296 KLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADE  336 (405)
Q Consensus       296 ~~~~~~i~~~f~~~~~ve~i~~~Le~~~~~~~~~~~~wa~~  336 (405)
                      ..+...+..+|.++|..|++.++++|+.       +.|...
T Consensus       261 ~~e~~~~~~~~~s~d~~Egv~AF~ekR~-------P~f~~~  294 (298)
T 3qre_A          261 SHAEVLLREAMPRPDVIEGIVSFLEKRP-------PQFPSL  294 (298)
T ss_dssp             -----------------------------------------
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHcCCC-------CCCCCC
Confidence            4455567888988889999999999998       788654

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=100.00  E-value=2.1e-50  Score=391.58  Aligned_cols=255  Identities=18%  Similarity=0.226  Sum_probs=210.1

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCC-
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN-  143 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~-  143 (405)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|+| ++||+|+|++++......... 
T Consensus        23 ~~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G-~~F~aG~Dl~~~~~~~~~~~~~  100 (290)
T 3sll_A           23 SFVLVDRP-RPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAG-KGFCSGADQKSAGPIPHIGGLT  100 (290)
T ss_dssp             CCEEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHTCTTCCEEEEEEST-TCSBCC------CCCSSCTTCC
T ss_pred             CeEEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEECCC-CCeeCCcChHHHhccccccccc
Confidence            34577776 699999999999999999999999999999999999999999999998 899999999987642100000 


Q ss_pred             -CCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCC-ccHHHHHhcCC
Q 015541          144 -TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPD-VGFSYIAAKGP  221 (405)
Q Consensus       144 -~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~-~G~~~~L~r~~  221 (405)
                       ......++...+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+ +|++++|+|++
T Consensus       101 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~L~r~v  180 (290)
T 3sll_A          101 QPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTASELGLSYLLPRAI  180 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTTTTTTSCSCCTTHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeehHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCcccHHHHHHHHh
Confidence             0013456677788999999999999999999999999999999999999999999999999999999 99999999999


Q ss_pred             ChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhH
Q 015541          222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLL  299 (405)
Q Consensus       222 G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~  299 (405)
                      |.. ++++|++||++|+ |+||+++||||++||++++.+.+.++++......|.  ...|+.++...........++.+.
T Consensus       181 G~~-~A~~llltG~~i~-A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~l~~~l~~e~  258 (290)
T 3sll_A          181 GTS-RASDIMLTGRDVD-ADEAERIGLVSRKVASESLLEECYAIGERIAGFSRPGIELTKRTIWSGLDAASLESHMHQEG  258 (290)
T ss_dssp             CHH-HHHHHHHHCCCEE-HHHHHHHTSSSEEECGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSCHHHHHHHHH
T ss_pred             CHH-HHHHHHHcCCCCC-HHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccCCHHHHHHHHH
Confidence            997 9999999999999 999999999999999999999999999875444443  445666655432122234455666


Q ss_pred             HHHHHHc-CCcccHHHHHHHHHhcc
Q 015541          300 PQITSCF-SSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       300 ~~i~~~f-~~~~~ve~i~~~Le~~~  323 (405)
                      ..+..++ .++|..|++.++++|+.
T Consensus       259 ~~~~~~~~~s~d~~eg~~AFlekR~  283 (290)
T 3sll_A          259 LGQLYVRLLTDNFEEATAARKEKRP  283 (290)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHTTSC
T ss_pred             HHHHHHHhcCHHHHHHHHHHHcCCC
Confidence            6788888 88889999999999987

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=2.8e-50  Score=384.15  Aligned_cols=249  Identities=22%  Similarity=0.287  Sum_probs=182.8

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      +..|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..........
T Consensus         5 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~   82 (256)
T 3qmj_A            5 MVTLQIDD-DNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSG-RGFSAGTDLAEMQARITDPNFS   82 (256)
T ss_dssp             -CCEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TEEECCBCHHHHHHHHHSSSCC
T ss_pred             cceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCcccCcCHHHHhhcccchhHH
Confidence            34588887 699999999999999999999999999999999999999999999998 8999999999987643222111


Q ss_pred             CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                      .    +....+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus        83 ~----~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~  158 (256)
T 3qmj_A           83 E----GKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQ  158 (256)
T ss_dssp             C----CSSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEEETTCEEECCGGGC---CCTTHHHHHHHHHHHH
T ss_pred             H----HHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEeCCCEEECcccccCCCCCccHHHHHHHHhCHH
Confidence            1    123346778899999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHHhcCC--CCCcchhhhhHHHH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSD--PEGEAPLKLLLPQI  302 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~~i  302 (405)
                       ++++|++||++++ |+||+++||||++||++++.+.+.++++..... |..++...++.+...  ......++.+...+
T Consensus       159 -~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~-~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~  235 (256)
T 3qmj_A          159 -NAAWLLMSSEWID-AEEALRMGLVWRICSPEELLPEARRHAEILAAK-PISSLMAVKHTMVEPNRAQIAAASARENAHF  235 (256)
T ss_dssp             -HHHHHHHSCCCEE-HHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTS-CHHHHHHHHHHHHCC----------------
T ss_pred             -HHHHHHHcCCCCC-HHHHHHCCCccEEeCHhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Confidence             9999999999999 999999999999999999999999999885444 444444444433322  12234455566677


Q ss_pred             HHHcCCcccHHHHHHHHHhc
Q 015541          303 TSCFSSEKSVRQIIEELKKH  322 (405)
Q Consensus       303 ~~~f~~~~~ve~i~~~Le~~  322 (405)
                      ..+|.+++..|++.++++|+
T Consensus       236 ~~~~~s~d~~eg~~af~ekr  255 (256)
T 3qmj_A          236 AELMGAQANAAALADFTDRR  255 (256)
T ss_dssp             --------------------
T ss_pred             HHHhcCHHHHHHHHHHHccC
Confidence            88999988999999999886

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=100.00  E-value=2.5e-50  Score=384.68  Aligned_cols=246  Identities=24%  Similarity=0.360  Sum_probs=205.3

Q ss_pred             ccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCC
Q 015541           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (405)
Q Consensus        66 ~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (405)
                      +.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....       
T Consensus         3 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~-------   73 (257)
T 2ej5_A            3 ETIRYEV-KGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAG-RAFCAGEDLSGVTEEM-------   73 (257)
T ss_dssp             SSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCBCC--------------
T ss_pred             CceEEEe-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CCccCCcCHHHHhhcc-------
Confidence            4577877 689999999999999999999999999999999999999999999997 8999999999875411       


Q ss_pred             chHHHHH-HHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541          146 LVPKVFT-AEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       146 ~~~~~~~-~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                      ....+.. ..+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|..
T Consensus        74 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~  153 (257)
T 2ej5_A           74 DHGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRA  153 (257)
T ss_dssp             CHHHHHHHTHHHHHHHHHHCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHH
T ss_pred             chhHHHHHHHHHHHHHHHhCCCCEEEEECccccchhHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHH
Confidence            1111222 246778899999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQI  302 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i  302 (405)
                       ++++|++||++++ |+||+++||||++||++++.+.+.+++.......|.  ..+|+.++..... .....++.+...+
T Consensus       154 -~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~l~~e~~~~  230 (257)
T 2ej5_A          154 -KALELAVLGEKVT-AEEAAALGLATKVIPLSDWEEEVKQFAERLSAMPTKAIGLIKRLLRESEET-TFDRYLEREAECQ  230 (257)
T ss_dssp             -HHHHHHHHCCCEE-HHHHHHHTCCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred             -HHHHHHHhCCccC-HHHHHHcCCcceecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHH
Confidence             9999999999999 999999999999999999999999998875444443  3455555543221 1133455566667


Q ss_pred             HHHcCCcccHHHHHHHHHhcc
Q 015541          303 TSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       303 ~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ..+|.+++..|++.++++++.
T Consensus       231 ~~~~~s~d~~eg~~af~ekr~  251 (257)
T 2ej5_A          231 RIAGLTSDHREGVKAFFEKRK  251 (257)
T ss_dssp             HHHHHSHHHHHHHHHHTTTCC
T ss_pred             HHHhCChHHHHHHHHHhcCCC
Confidence            888888889999999998876

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=100.00  E-value=4e-50  Score=387.12  Aligned_cols=262  Identities=21%  Similarity=0.265  Sum_probs=193.5

Q ss_pred             CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCC
Q 015541           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (405)
Q Consensus        64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (405)
                      .++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....... .
T Consensus         7 ~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~-~   83 (276)
T 2j5i_A            7 RWKTVKVEI-EDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEYFREVDAG-P   83 (276)
T ss_dssp             CCSSEEEEE-ETEEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTEEEEEEEEST-TCSBCCBCHHHHHHHHHHS-C
T ss_pred             CCceEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCCcCCcChhhHhhccccc-h
Confidence            356688887 689999999999999999999999999999999999999999999997 8999999999986432111 1


Q ss_pred             CCchHHHHHHHHHH-HHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCC
Q 015541          144 TPLVPKVFTAEYSL-ICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (405)
Q Consensus       144 ~~~~~~~~~~~~~l-~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G  222 (405)
                      ......+....+.+ +..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG  163 (276)
T 2j5i_A           84 EILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVG  163 (276)
T ss_dssp             TTHHHHHHHHHHHHHTTTTTTCSSCEEEEECSCEEGGGHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhC
Confidence            12223333333443 66789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHH
Q 015541          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLP  300 (405)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~  300 (405)
                      .+ ++++|++||++++ |+||+++||||++||++++.+.+.++++......|.  ..+|++++...... ....+..+..
T Consensus       164 ~~-~A~~l~ltg~~~~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~-~~~~~~~e~~  240 (276)
T 2j5i_A          164 HR-QSLMYIMTGKTFG-GQKAAEMGLVNESVPLAQLREVTIELARNLLEKNPVVLRAAKHGFKRCRELT-WEQNEDYLYA  240 (276)
T ss_dssp             HH-HHHHHHHHCCEEE-HHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHH
T ss_pred             HH-HHHHHHHhCCccc-HHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHH
Confidence            97 9999999999999 999999999999999999999999999885544443  44566665542221 1223333333


Q ss_pred             HHHHH--cCCc-ccHHHHHHHHHhccCCccchhhHHHHH
Q 015541          301 QITSC--FSSE-KSVRQIIEELKKHQSSAETSVAQWADE  336 (405)
Q Consensus       301 ~i~~~--f~~~-~~ve~i~~~Le~~~~~~~~~~~~wa~~  336 (405)
                      ....+  +.++ +..|++.++++++.+.     +.|...
T Consensus       241 ~~~~~~~~~s~~d~~eg~~AF~ekr~r~-----p~~~~~  274 (276)
T 2j5i_A          241 KLDQSRLLDTEGGREQGMKQFLDDKSIK-----PGLQAY  274 (276)
T ss_dssp             HHHHHHHHC------------------------------
T ss_pred             HHHHHhhcCChHHHHHHHHHHHhcccCC-----CCcccC
Confidence            33333  6666 6999999999887211     678643

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=100.00  E-value=1.1e-50  Score=389.67  Aligned_cols=253  Identities=21%  Similarity=0.226  Sum_probs=211.0

Q ss_pred             ccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCC
Q 015541           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (405)
Q Consensus        66 ~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (405)
                      +.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++...........
T Consensus         3 ~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~   80 (269)
T 1nzy_A            3 EAIGHRV-EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAE-DAFCAGFYLREIPLDKGVAGVRD   80 (269)
T ss_dssp             SSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCGGGSCSSSHHHHHHH
T ss_pred             ceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCC-CCcccCcCHHHHhhcccccChHH
Confidence            3477877 689999999999999999999999999999999999999999999997 89999999998643100000000


Q ss_pred             chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHH
Q 015541          146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  225 (405)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~  225 (405)
                      ....++...+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. 
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~-  159 (269)
T 1nzy_A           81 HFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMR-  159 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEeCcccccCCCCCccHHHHHHHHhhHH-
Confidence            1124555567888899999999999999999999999999999999999999999999999999999999999999986 


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHH
Q 015541          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (405)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~  303 (405)
                      ++++|++||++++ |+||+++||||++||++++.+.+.++++......|.  ...|+.++..... .....++.+...+.
T Consensus       160 ~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~-~~~~~l~~e~~~~~  237 (269)
T 1nzy_A          160 RAMELMLTNRTLY-PEEAKDWGLVSRVYPKDEFREVAWKVARELAAAPTHLQVMAKERFHAGWMQ-PVEECTEFEIQNVI  237 (269)
T ss_dssp             HHHHHHHHCCCBC-HHHHHHHTSCSCEECHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCC-HHHHHHCCCccEeeCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC-CHHHHHHHHHHHHH
Confidence            9999999999999 999999999999999999999999998875444443  3455555543221 22334555666678


Q ss_pred             HHcCCcccHHHHHHHHHhcc
Q 015541          304 SCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       304 ~~f~~~~~ve~i~~~Le~~~  323 (405)
                      .+|.+++..|++.++++++.
T Consensus       238 ~~~~s~d~~egi~af~ekr~  257 (269)
T 1nzy_A          238 ASVTHPHFMPCLTRFLDGHR  257 (269)
T ss_dssp             HHHHSTTHHHHHHHHHTTCC
T ss_pred             HHhcCHHHHHHHHHHHhcCC
Confidence            88888889999999999887

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=100.00  E-value=8.3e-51  Score=390.04  Aligned_cols=249  Identities=23%  Similarity=0.275  Sum_probs=208.1

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||+|+++||+|+|++++...... . .
T Consensus         8 ~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~-~-~   84 (267)
T 3r9t_A            8 APGALAER-RGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENL-Y-H   84 (267)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTCCC-S-C
T ss_pred             CCcEEEEE-ECCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhcccch-h-h
Confidence            45688887 6999999999999999999999999999999999999999999999987799999999998752111 1 1


Q ss_pred             CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                      .....+..  ..+  .+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus        85 ~~~~~~~~--~~~--~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~  160 (267)
T 3r9t_A           85 PDHPEWGF--AGY--VRHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRK  160 (267)
T ss_dssp             TTCGGGCG--GGT--TTCCCSSCEEEEECSEECTHHHHHHHHSSEEEEETTCEECCGGGGTTCCCTTTHHHHHHHHSCHH
T ss_pred             HHHHhHHH--HHH--HHHhCCCCEEEEECCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHcCHH
Confidence            11001100  111  23489999999999999999999999999999999999999999999999999999999999997


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHH---hcCCCC--CcchhhhhH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAK---YSSDPE--GEAPLKLLL  299 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~---~~~~~~--~~~~l~~~~  299 (405)
                       ++++|++||++++ |+||+++||||++||++++.+.+.++++.. ...|+.++...++.   +.....  ....++.+.
T Consensus       161 -~A~~l~ltg~~i~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~~l-a~~~p~a~~~~K~~~~~l~~~~~~~l~~~l~~e~  237 (267)
T 3r9t_A          161 -VAMRLLLTGEPLS-AAAARDWGLINEVVEAGSVLDAALALASAI-TVNAPLSVQASKRIAYGVDDGVVVGDEPGWDRTM  237 (267)
T ss_dssp             -HHHHHHHHCCCEE-HHHHHHHTSSSEEECTTCHHHHHHHHHHHH-HTSCHHHHHHHHHHHTTEETTEEGGGHHHHHHHH
T ss_pred             -HHHHHHHcCCCCC-HHHHHHCCCccEEcChhHHHHHHHHHHHHH-HhCChHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence             9999999999999 999999999999999999999999999875 44555566666655   543221  123455566


Q ss_pred             HHHHHHcCCcccHHHHHHHHHhcc
Q 015541          300 PQITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       300 ~~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ..+..++.+++..|++.++++|+.
T Consensus       238 ~~~~~~~~s~d~~eg~~AF~ekR~  261 (267)
T 3r9t_A          238 REMRALLKSEDAKEGPRAFAEKRE  261 (267)
T ss_dssp             HHHHHHTTSSHHHHHHHHHHTTSC
T ss_pred             HHHHHHhCCHHHHHHHHHHHcCCC
Confidence            678899999989999999999987

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=100.00  E-value=5.7e-51  Score=392.19  Aligned_cols=257  Identities=16%  Similarity=0.176  Sum_probs=215.8

Q ss_pred             CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCC
Q 015541           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (405)
Q Consensus        64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (405)
                      .++.|.++..+++|++||||||+ +|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.....   .
T Consensus        11 ~~~~v~~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~---~   85 (272)
T 3qk8_A           11 DFPSLRFEPGEHGVLNLVLDSPG-LNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEG-KAFSSGGSFELIDETIG---D   85 (272)
T ss_dssp             GCTTEEEEECSTTEEEEEECCHH-HHEECHHHHHHHHHHHHHHHHCTTCSEEEEEESS-SCSBCEECHHHHHHHHH---C
T ss_pred             CCCeEEEEEeCCCEEEEEECCCC-cCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCeeCCcCHHHHhcccc---c
Confidence            46779998854589999999999 9999999999999999999999999999999998 89999999999865321   1


Q ss_pred             CCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (405)
Q Consensus       144 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~  223 (405)
                      ......++...+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~  165 (272)
T 3qk8_A           86 YEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLGVAAGDHAAICWPLLVGM  165 (272)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEEHHHHHHHHHSSEEEEETTCEEECCHHHHTSCSCSSHHHHTHHHHCH
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCH
Confidence            11233566777789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHH
Q 015541          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQ  301 (405)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~  301 (405)
                      . ++++|++||++++ |+||+++||||+|||.+++.+.+.++++......|.  ..+|++++.....  ....++.....
T Consensus       166 ~-~A~~l~ltg~~~~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~--~~~~~~~~~~~  241 (272)
T 3qk8_A          166 A-KAKYYLLTCETLS-GEEAERIGLVSTCVDDDEVLPTATRLAENLAQGAQNAIRWTKRSLNHWYRM--FGPTFETSLGL  241 (272)
T ss_dssp             H-HHHHHHHHCCCEE-HHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH--THHHHHHHHHH
T ss_pred             H-HHHHHHHcCCCCC-HHHHHHCCCCcEeeCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh--cchhHHHHHHH
Confidence            7 9999999999999 999999999999999999999999999885544443  4455555543211  11234444444


Q ss_pred             HHHHcCCcccHHHHHHHHHhccCCccchhhHHHHH
Q 015541          302 ITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADE  336 (405)
Q Consensus       302 i~~~f~~~~~ve~i~~~Le~~~~~~~~~~~~wa~~  336 (405)
                      ...+|.++|..|++.++++|++       +.|..+
T Consensus       242 e~~~~~s~d~~eg~~Af~ekR~-------p~f~g~  269 (272)
T 3qk8_A          242 EFLGFTGPDVQEGLAAHRQKRP-------ARFTDR  269 (272)
T ss_dssp             HHHHTTSSHHHHHHHHHHTTSC-------CCC---
T ss_pred             HHHHhCCHHHHHHHHHHHcCCC-------CCCCCC
Confidence            4578988889999999999998       677654

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=100.00  E-value=9.7e-50  Score=382.29  Aligned_cols=247  Identities=20%  Similarity=0.267  Sum_probs=210.7

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEee-CCCCCcccCCChhhHHHhhhhCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEG-SGPRAFCAGMDIKGVVAEIQKDRN  143 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g-~g~~~FcaG~Dl~~~~~~~~~~~~  143 (405)
                      ++.|.++. +++|++|||||| ++|+||.+|+.+|.++++.++.|+++|+||||| .| ++||+|+|++++..     . 
T Consensus         8 ~~~i~~~~-~~~v~~itlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g-~~F~aG~Dl~~~~~-----~-   78 (265)
T 2ppy_A            8 KQYLTVFK-EDGIAEIHLHIN-KSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVP-KFFSAGADINFLRS-----A-   78 (265)
T ss_dssp             CSSEEEEE-ETTEEEEEECSS-TTCCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECST-TEEECCBCHHHHTT-----S-
T ss_pred             CCeEEEEe-eCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCCC-CeeeeCcCHHHHhc-----c-
Confidence            56688887 689999999999 899999999999999999999999999999999 65 89999999998753     1 


Q ss_pred             CCchHHHHHHH-HHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCe-eeeCccccccccCCccHHHHHhcCC
Q 015541          144 TPLVPKVFTAE-YSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKT-LLAMPENGIGLFPDVGFSYIAAKGP  221 (405)
Q Consensus       144 ~~~~~~~~~~~-~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a-~f~~PE~~iGl~P~~G~~~~L~r~~  221 (405)
                      ......+.... +.++..|.++||||||+|||+|+|||++|+++||+|||++++ +|++||+++|++|++|++++|+|++
T Consensus        79 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~ag~f~~pe~~~Gl~p~~g~~~~l~~~v  158 (265)
T 2ppy_A           79 DPRFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARLI  158 (265)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHTSSEEEEETTCCCEECCGGGGTCCCTTTHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEEeeHHHHHHHhCCEEEEeCCCCEEECcccccCCCCCchHHHHHHHHh
Confidence            11122333444 678889999999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             ChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhH
Q 015541          222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLL  299 (405)
Q Consensus       222 G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~  299 (405)
                      |.. ++++|++||++++ |+||+++||||++||++++.+.+.++++......|.  ..+|+.++.... ......+..+.
T Consensus       159 G~~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~l~~e~  235 (265)
T 2ppy_A          159 GYS-RALDMNITGETIT-PQEALEIGLVNRVFPQAETRERTREYARKLANSATYAVSNIKLAIMNGKE-MPLNVAIRYEG  235 (265)
T ss_dssp             CHH-HHHHHHHHCCCBC-HHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTT-SCHHHHHHHHH
T ss_pred             CHH-HHHHHHHhCCccC-HHHHHHCCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhc-CCHHHHHHHHH
Confidence            987 9999999999999 999999999999999999999999999875444443  445555554322 12233455566


Q ss_pred             HHHHHHcCCcccHHHHHHHHHhcc
Q 015541          300 PQITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       300 ~~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ..+..+|.+++..|++.++++++.
T Consensus       236 ~~~~~~~~s~d~~egi~af~ekr~  259 (265)
T 2ppy_A          236 ELQNLLFRSEDAKEGLSAFLEKRQ  259 (265)
T ss_dssp             HHHHHHHTSHHHHHHHHHHHTTSC
T ss_pred             HHHHHHhCCHHHHHHHHHHHcCCC
Confidence            678889999889999999999886

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=100.00  E-value=3.9e-50  Score=388.88  Aligned_cols=246  Identities=21%  Similarity=0.265  Sum_probs=214.9

Q ss_pred             EEEEEee--CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCC
Q 015541           68 VKGNVHP--NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (405)
Q Consensus        68 i~~~~~~--~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (405)
                      |.++. +  ++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.| ++||+|+|++++..    .....
T Consensus        26 v~~~~-~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G-~~F~aG~Dl~~~~~----~~~~~   99 (286)
T 3myb_A           26 LLLQD-RDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASG-KAFCAGHDLKEMRA----EPSRE   99 (286)
T ss_dssp             SEEEE-ECTTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECS-SCSBCCBCHHHHHS----SCCHH
T ss_pred             EEEEE-ecCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCC-CCccCCcChhhhhc----cccHH
Confidence            78887 6  89999999999999999999999999999999999999999999998 89999999999864    11222


Q ss_pred             chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHH
Q 015541          146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  225 (405)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~  225 (405)
                      ....++...+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++ ++|++++|+|++|.. 
T Consensus       100 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~-~~g~~~~L~r~vG~~-  177 (286)
T 3myb_A          100 YYEKLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLF-CSTPGVALSRNVGRK-  177 (286)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCC-CHHHHHHHTTTSCHH-
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEECCeehHHHHHHHHhCCEEEEcCCCEEECcccccCCC-CchHHHHHHHHcCHH-
Confidence            345567778889999999999999999999999999999999999999999999999999999 889999999999997 


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHH
Q 015541          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (405)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~  303 (405)
                      ++++|++||++++ |+||+++||||++||++++.+.+.+++.......|.  ..+|+.++..... .....++.+...+.
T Consensus       178 ~A~~llltG~~i~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~-~l~~~l~~e~~~~~  255 (286)
T 3myb_A          178 AAFEMLVTGEFVS-ADDAKGLGLVNRVVAPKALDDEIEAMVSKIVAKPRAAVAMGKALFYRQIET-DIESAYADAGTTMA  255 (286)
T ss_dssp             HHHHHHHHCCCEE-HHHHHHHTSCSEEECGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCC-HHHHHHCCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHH
Confidence            9999999999999 999999999999999999999999999885444443  4455655554322 22345566677888


Q ss_pred             HHcCCcccHHHHHHHHHhcc
Q 015541          304 SCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       304 ~~f~~~~~ve~i~~~Le~~~  323 (405)
                      .+|.+++..|++.++++++.
T Consensus       256 ~~~~s~d~~egi~aFlekr~  275 (286)
T 3myb_A          256 CNMMDPSALEGVSAFLEKRR  275 (286)
T ss_dssp             HHHHSHHHHHHHHHHHTTSC
T ss_pred             HHhCCHHHHHHHHHHHccCC
Confidence            99999989999999999987

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=100.00  E-value=5e-50  Score=384.28  Aligned_cols=246  Identities=17%  Similarity=0.226  Sum_probs=204.9

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++ ...    ..  
T Consensus         8 ~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~-~~~----~~--   78 (265)
T 3rsi_A            8 ARELLVER-DGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAG-SAYCVGGDLS-DGW----MV--   78 (265)
T ss_dssp             -CCEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSEECC---------------
T ss_pred             CCcEEEEE-ECCEEEEEEcCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCcccCcCCC-ccc----cc--
Confidence            56788887 699999999999999999999999999999999999999999999998 8999999998 211    11  


Q ss_pred             CchHHHHHHHHH-HHHHH-H--hCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcC
Q 015541          145 PLVPKVFTAEYS-LICKI-S--EYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG  220 (405)
Q Consensus       145 ~~~~~~~~~~~~-l~~~i-~--~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~  220 (405)
                       ....+....+. ++..+ .  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|+
T Consensus        79 -~~~~~~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~  157 (265)
T 3rsi_A           79 -RDGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQ  157 (265)
T ss_dssp             -------CCCHHHHHHHTTSSCCCSSCEEEEECSCEETHHHHHHTTCSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHH
T ss_pred             -chHHHHHHhHHHHHHHHHHhcCCCCCEEEEECCeeeHHHHHHHHHCCEEEecCCCEEECchhccCCCCCccHHHHHHHH
Confidence             11123223345 67788 8  9999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhh
Q 015541          221 PGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLL  298 (405)
Q Consensus       221 ~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~  298 (405)
                      +|.. ++++|++||++++ |+||+++||||++||++++.+.+.+++.......|.  ...|++++..... .....++.+
T Consensus       158 vG~~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~l~~~~~~e  234 (265)
T 3rsi_A          158 IPYT-KAMEMILTGEPLT-AFEAYHFGLVGHVVPAGTALDKARSLADRIVRNGPLAVRNAKEAIVRSGWL-AEEDARAIE  234 (265)
T ss_dssp             SCHH-HHHHHHHHCCCEE-HHHHHHTTSCSEEESTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTC-CHHHHHHHH
T ss_pred             hCHH-HHHHHHHcCCCCC-HHHHHHCCCccEecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcC-CHHHHHHHH
Confidence            9997 9999999999999 999999999999999999999999999885554443  4456666554322 223445666


Q ss_pred             HHHHHHHcCCcccHHHHHHHHHhcc
Q 015541          299 LPQITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       299 ~~~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ...+..+|.+++..|++.++++|+.
T Consensus       235 ~~~~~~~~~s~d~~eg~~af~ekr~  259 (265)
T 3rsi_A          235 ARLTRPVITSADAREGLAAFKEKRE  259 (265)
T ss_dssp             HHHHHHHHTSHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHhcCHHHHHHHHHHHcCCC
Confidence            7778899999989999999999987

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=100.00  E-value=5.3e-50  Score=382.69  Aligned_cols=247  Identities=21%  Similarity=0.259  Sum_probs=208.7

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      +..|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....      
T Consensus         4 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~------   75 (258)
T 2pbp_A            4 FVSIAARQ-EGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRG-RAFAAGADIQEMAKDD------   75 (258)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TEEECCCCHHHHHTCC------
T ss_pred             cceEEEEe-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCccCCcCHHHHhccc------
Confidence            34577777 689999999999999999999999999999999999999999999986 8999999999875411      


Q ss_pred             CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                      .....+.... .++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|..
T Consensus        76 ~~~~~~~~~~-~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~  154 (258)
T 2pbp_A           76 PIRLEWLNQF-ADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPK  154 (258)
T ss_dssp             HHHHHHHCTT-HHHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred             chhHHHHHHH-HHHHHHHhCCCCEEEEEcCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCcccHHHHHHHHhCHH
Confidence            0012222222 566789999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQI  302 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i  302 (405)
                       ++++|++||++++ |+||+++||||++||++++.+.+.+++.......|.  ..+|+.++..... .....++.+...+
T Consensus       155 -~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~l~~e~~~~  231 (258)
T 2pbp_A          155 -RALEWLWTGARMS-AKEAEQLGIVNRVVSPELLMEETMRLAGRLAEQPPLALRLIKEAVQKAVDY-PLYEGMQFERKNF  231 (258)
T ss_dssp             -HHHHHHHHCCCEE-HHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred             -HHHHHHHcCCccC-HHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHH
Confidence             9999999999999 999999999999999999999999999875444443  3455555543221 1133455566678


Q ss_pred             HHHcCCcccHHHHHHHHHhcc
Q 015541          303 TSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       303 ~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ..++.+++..|++.++++++.
T Consensus       232 ~~~~~s~d~~eg~~af~ekr~  252 (258)
T 2pbp_A          232 YLLFASEDQKEGMAAFLEKRK  252 (258)
T ss_dssp             HHHTTSHHHHHHHHHHHTTSC
T ss_pred             HHHhCCHHHHHHHHHHHccCC
Confidence            889999889999999999886

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=100.00  E-value=1.6e-50  Score=391.97  Aligned_cols=254  Identities=17%  Similarity=0.148  Sum_probs=205.3

Q ss_pred             CCCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCC
Q 015541           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (405)
Q Consensus        63 ~~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (405)
                      +.++.|.++..+++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.|+++||+|+|++++....   .
T Consensus        24 ~~~~~v~~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~---~  100 (289)
T 3t89_A           24 EGFEDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYG---G  100 (289)
T ss_dssp             TTCSSEEEEEETTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC----------
T ss_pred             CCCCeEEEEEecCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhccc---c
Confidence            4567799987338999999999999999999999999999999999999999999999877999999999875411   0


Q ss_pred             CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCC
Q 015541          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (405)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G  222 (405)
                      .......+....+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.|++++|+|++|
T Consensus       101 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~~~g~~~L~r~vG  180 (289)
T 3t89_A          101 YKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVG  180 (289)
T ss_dssp             ---------CTHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHC
T ss_pred             chhhhHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEeCCCEEeccccccCCCCCchHHHHHHHhcC
Confidence            00111112223456788899999999999999999999999999999999999999999999998888888999999999


Q ss_pred             hHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHH
Q 015541          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLP  300 (405)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~  300 (405)
                      .. ++++|++||++++ |+||+++||||++||++++.+.+.++++......|.  ..+|++++....  ........+..
T Consensus       181 ~~-~A~~llltG~~i~-A~eA~~~GLV~~vv~~~~l~~~a~~~A~~la~~~~~a~~~~K~~l~~~~~--~~~~~~~~e~~  256 (289)
T 3t89_A          181 QK-KAREIWFLCRQYD-AKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNADCD--GQAGLQELAGN  256 (289)
T ss_dssp             HH-HHHHHHHHCCCEE-HHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTS--HHHHHHHHHHH
T ss_pred             HH-HHHHHHHcCCccc-HHHHHHCCCceEeeCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cchHHHHHHHH
Confidence            97 9999999999999 999999999999999999999999999885544443  334555544311  10111123344


Q ss_pred             HHHHHcCCcccHHHHHHHHHhcc
Q 015541          301 QITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       301 ~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      .+..+|.++|..|++.++++|+.
T Consensus       257 ~~~~~~~s~d~~Eg~~AF~ekR~  279 (289)
T 3t89_A          257 ATMLFYMTEEGQEGRNAFNQKRQ  279 (289)
T ss_dssp             HHHHHTTSSTTTHHHHHHHTTSC
T ss_pred             HHHHHhcCHHHHHHHHHHhcCCC
Confidence            56788988889999999999997

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=100.00  E-value=2.1e-50  Score=386.10  Aligned_cols=248  Identities=18%  Similarity=0.180  Sum_probs=208.9

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEee-CCCCCcccCCChhhHHHhhhhCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEG-SGPRAFCAGMDIKGVVAEIQKDRN  143 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g-~g~~~FcaG~Dl~~~~~~~~~~~~  143 (405)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+ +|+||||| .|+++||+|+|++++.....  ..
T Consensus         3 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~~~~~~~--~~   78 (261)
T 1ef8_A            3 YQYVNVVT-INKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHELPSGGR--DP   78 (261)
T ss_dssp             CSSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTTC-------CT
T ss_pred             cceEEEEE-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHhhhccCc--hh
Confidence            45688887 6899999999999999999999999999999999999 99999999 87689999999998764211  11


Q ss_pred             CCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (405)
Q Consensus       144 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~  223 (405)
                      ..    ++...+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.
T Consensus        79 ~~----~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~  154 (261)
T 1ef8_A           79 LS----YDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGF  154 (261)
T ss_dssp             TC----TTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCH
T ss_pred             HH----HHHHHHHHHHHHHhCCCCEEEEECCEEEeHhHHHHHhCCEEEecCCCEEeCchhccCCCCCccHHHHHHHHhCH
Confidence            11    22234677889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHH
Q 015541          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQ  301 (405)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~  301 (405)
                      . ++++|++||+.++ |+||+++||||++||++++.+.+.++++......|.  ...|+.++...... ....++.+...
T Consensus       155 ~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~-~~~~~~~e~~~  231 (261)
T 1ef8_A          155 H-IVKELIFTASPIT-AQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEELRVLGEAH-TMNSDEFERIQ  231 (261)
T ss_dssp             H-HHHHHHHHCCCEE-HHHHHHTTSCSEEECHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHCC-CCCHHHHHHHH
T ss_pred             H-HHHHHHHcCCccC-HHHHHHCCCcccccCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCC-HHHHHHHHHHH
Confidence            7 9999999999999 999999999999999999999999999875444443  34555555432222 23455556666


Q ss_pred             HH--HHcCCcccHHHHHHHHHhcc
Q 015541          302 IT--SCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       302 i~--~~f~~~~~ve~i~~~Le~~~  323 (405)
                      +.  .++.+++..|++.++++++.
T Consensus       232 ~~~~~~~~s~d~~eg~~af~ekr~  255 (261)
T 1ef8_A          232 GMRRAVYDSEDYQEGMNAFLEKRK  255 (261)
T ss_dssp             HHHHHHHTSHHHHHHHHHHHTTSC
T ss_pred             hhHHHhhcCHHHHHHHHHHHccCC
Confidence            77  88988889999999999886

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=100.00  E-value=4e-50  Score=389.02  Aligned_cols=249  Identities=20%  Similarity=0.232  Sum_probs=211.9

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      +..|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....    ..
T Consensus        32 ~~~v~~~~-~~~V~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~----~~  105 (287)
T 2vx2_A           32 PRPTSARQ-LDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEG-PVFSSGHDLKELTEEQ----GR  105 (287)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHTTTTCTTCCEEEEEESS-SEEECCSCCC-CCGGG----CH
T ss_pred             CcceEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCC-CCccCCcCHHHHhccc----ch
Confidence            45688887 689999999999999999999999999999999999999999999997 8999999999875411    11


Q ss_pred             CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                      .....++...+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|+++ |+|++|..
T Consensus       106 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~-L~r~vG~~  184 (287)
T 2vx2_A          106 DYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPRK  184 (287)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCHHHHHH-HHTTSCHH
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEcCCCEEECchhhhCCCCchHHHH-HHHHhhHH
Confidence            12334566677888999999999999999999999999999999999999999999999999999999999 99999987


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQI  302 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i  302 (405)
                       ++++|++||++++ |+||+++||||++||++++.+.+.++++......|.  ...|++++..... .....+..+...+
T Consensus       185 -~A~~llltg~~i~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~-~l~~~l~~e~~~~  261 (287)
T 2vx2_A          185 -VALEMLFTGEPIS-AQEALLHGLLSKVVPEAELQEETMRIARKIASLSRPVVSLGKATFYKQLPQ-DLGTAYYLTSQAM  261 (287)
T ss_dssp             -HHHHHHHHCCCEE-HHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHH
T ss_pred             -HHHHHHHhCCCCC-HHHHHHCCCcceecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHH
Confidence             9999999999999 999999999999999999999999999875444443  3445555543221 2133455566678


Q ss_pred             HHHcCCcccHHHHHHHHHhcc
Q 015541          303 TSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       303 ~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ..+|.+++..|++.++++++.
T Consensus       262 ~~~~~s~d~~egi~af~ekr~  282 (287)
T 2vx2_A          262 VDNLALRDGQEGITAFLQKRK  282 (287)
T ss_dssp             HHHHTSHHHHHHHHHHHTTSC
T ss_pred             HHHhCCHHHHHHHHHHHcCCC
Confidence            889999889999999999886

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=100.00  E-value=3.6e-50  Score=384.43  Aligned_cols=252  Identities=18%  Similarity=0.216  Sum_probs=209.4

Q ss_pred             CccEEEEEeeCcEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCC
Q 015541           65 EEFVKGNVHPNGVAVITLD-RPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLn-rp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (405)
                      ++.|.++. +++|++|||| ||+++|+||.+|+.+|.++++.++.|+ +++|||||.| ++||+|+|++++....... .
T Consensus         4 ~~~i~~~~-~~~v~~itln~rp~~~Nal~~~~~~~L~~al~~~~~d~-~r~vvltg~g-~~F~aG~Dl~~~~~~~~~~-~   79 (261)
T 2gtr_A            4 YRDIVVRK-QDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADD-SKLVLLSAVG-SVFCCGLDFIYFIRRLTDD-R   79 (261)
T ss_dssp             CSSEEEEE-ETTEEEEEECCSSSSTTEECHHHHHHHHHHHHHHHHSS-CSCEEEEESS-SCSBCEECHHHHHHHHHHC-H
T ss_pred             cceEEEEE-eCCEEEEEECCCCccCCCCCHHHHHHHHHHHHHHhcCC-CEEEEEecCC-CccccccCchhhhhccccc-h
Confidence            45688887 6899999999 699999999999999999999999987 4999999997 8999999999986522111 0


Q ss_pred             CCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (405)
Q Consensus       144 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~  223 (405)
                      ......+....+.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~  159 (261)
T 2gtr_A           80 KRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGG  159 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCTTTTTCCCCTTHHHHHHHHHCH
T ss_pred             hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeEeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCccchHHHHHHHHcCH
Confidence            01123344556678889999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHHhcCCCC--CcchhhhhHHH
Q 015541          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPE--GEAPLKLLLPQ  301 (405)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~--~~~~l~~~~~~  301 (405)
                      . ++++|++||++++ |+||+++||||++||++++.+.+.+++...... |+.++...++.+.....  ....++.+...
T Consensus       160 ~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~-~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~  236 (261)
T 2gtr_A          160 A-SANEMLLSGRKLT-AQEACGKGLVSQVFWPGTFTQEVMVRIKELASC-NPVVLEESKALVRCNMKMELEQANERECEV  236 (261)
T ss_dssp             H-HHHHHHHHCCCEE-HHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTS-CHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHcCCCCC-HHHHHHCCCcccccChhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence            7 9999999999999 999999999999999999999999998875444 44344444443332211  12234445566


Q ss_pred             HHHHcCCcccHHHHHHHHHhcc
Q 015541          302 ITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       302 i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      +..+|.+++..|++.++++++.
T Consensus       237 ~~~~~~s~d~~eg~~af~ekr~  258 (261)
T 2gtr_A          237 LKKIWGSAQGMDSMLKYLQRKI  258 (261)
T ss_dssp             HHHHHHSTTTTHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHccCC
Confidence            7788888889999999999987

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=100.00  E-value=2.2e-50  Score=389.26  Aligned_cols=250  Identities=21%  Similarity=0.264  Sum_probs=197.9

Q ss_pred             CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCC
Q 015541           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (405)
Q Consensus        64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (405)
                      ..+.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||+|.| ++||+|+|++++......   
T Consensus        18 ~~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~---   92 (278)
T 4f47_A           18 SGPDALVEQ-RGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAG-GYFCAGMDLKAATKKPPG---   92 (278)
T ss_dssp             -CCSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCCC-----------------
T ss_pred             CCCceEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CcccCCcChHhhhccchh---
Confidence            346688887 699999999999999999999999999999999999999999999998 899999999998652210   


Q ss_pred             CCchHHHHHHHHHHHHHHH---hCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcC
Q 015541          144 TPLVPKVFTAEYSLICKIS---EYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG  220 (405)
Q Consensus       144 ~~~~~~~~~~~~~l~~~i~---~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~  220 (405)
                       ..... ......++..+.   ++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|+
T Consensus        93 -~~~~~-~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~  170 (278)
T 4f47_A           93 -DSFKD-GSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQ  170 (278)
T ss_dssp             ----------CTTCBTTTTBSCCCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCTTSHHHHHHHH
T ss_pred             -hhHHH-HHHHHHHHHHHHHhcCCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHH
Confidence             00000 001122334555   9999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhh
Q 015541          221 PGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLL  298 (405)
Q Consensus       221 ~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~  298 (405)
                      +|.. ++++|++||++++ |+||+++||||++||.+++.+.+.++++......|.  ..+|++++..... .....++.+
T Consensus       171 vG~~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~l~~~l~~e  247 (278)
T 4f47_A          171 IPYT-VACDLLLTGRHIT-AAEAKEMGLVGHVVPDGQALTKALEIAEIIAANGPLAVQAILRTIRETEGM-HENEAFKID  247 (278)
T ss_dssp             SCHH-HHHHHHHHCCCEE-HHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTTS-CHHHHHHHH
T ss_pred             hCHH-HHHHHHHcCCcCC-HHHHHHCCCceEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHH
Confidence            9997 9999999999999 999999999999999999999999999885444443  3445555543221 223445566


Q ss_pred             HHHHHHHcCCcccHHHHHHHHHhcc
Q 015541          299 LPQITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       299 ~~~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ...+..++.+++..|++.++++++.
T Consensus       248 ~~~~~~~~~s~d~~eg~~Af~ekr~  272 (278)
T 4f47_A          248 TRIGIEVFLSDDAKEGPQAFAQKRK  272 (278)
T ss_dssp             HHHHGGGGGSSHHHHHHHHHHTTSC
T ss_pred             HHHHHHHhcCHHHHHHHHHHhcCCC
Confidence            6778889999889999999999987

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=3.6e-50  Score=385.10  Aligned_cols=250  Identities=17%  Similarity=0.139  Sum_probs=212.3

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      ++.|.++..+++|++||||||+ +|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++ +......  ..
T Consensus         9 ~~~v~~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~-~~~~~~~--~~   83 (264)
T 1wz8_A            9 YPGLAFAWPRPGVLEITFRGEK-LNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEG-GVFSAGGSFG-LIEEMRA--SH   83 (264)
T ss_dssp             CTTEEEEEEETTEEEEEECCSG-GGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGG-GCCBCCBCHH-HHHHHHH--CH
T ss_pred             CCeEEEEEccCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCCcccCccc-ccccccc--ch
Confidence            3457777635899999999999 9999999999999999999999999999999997 8999999999 7542110  10


Q ss_pred             CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                      .....++...+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|..
T Consensus        84 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~  163 (264)
T 1wz8_A           84 EALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMA  163 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCEEEEECCeeechhHHHHHhCCEEEecCCCEEeCchhhcCcCCCccHHHHHHHHhCHH
Confidence            11234556677888999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQI  302 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i  302 (405)
                       ++++|++||++++ |+||+++||||++||++++.+.+.+++.......|.  ..+|+.++.....  ....++.+...+
T Consensus       164 -~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~--~~~~l~~e~~~~  239 (264)
T 1wz8_A          164 -KAKYHLLLNEPLT-GEEAERLGLVALAVEDEKVYEKALEVAERLAQGPKEALHHTKHALNHWYRS--FLPHFELSLALE  239 (264)
T ss_dssp             -HHHHHHHHTCCEE-HHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHT--THHHHHHHHHHH
T ss_pred             -HHHHHHHcCCCCC-HHHHHHCCCceeecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence             9999999999999 999999999999999999999999999875444443  3455555543222  234555666678


Q ss_pred             HHHcCCcccHHHHHHHHHhcc
Q 015541          303 TSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       303 ~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ..+|.+++..|++.++++++.
T Consensus       240 ~~~~~s~d~~eg~~af~ekr~  260 (264)
T 1wz8_A          240 FLGFSGKELEEGLKALKEKRP  260 (264)
T ss_dssp             HHGGGSHHHHHHHHHHHTTSC
T ss_pred             HHHhcChHHHHHHHHHHccCC
Confidence            889998888999999999886

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=100.00  E-value=2.3e-51  Score=393.59  Aligned_cols=248  Identities=21%  Similarity=0.302  Sum_probs=211.8

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.....     
T Consensus         6 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~-----   78 (265)
T 3qxz_A            6 VTELHEEI-RDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAP-PAFCSGAQISAAAETFA-----   78 (265)
T ss_dssp             CCEEEEEE-ETTEEEEEEECGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TEEECCBCSTTCTTCCC-----
T ss_pred             cceEEEEE-ECCEEEEEEcCCccCCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CccccCcChHHHhhccc-----
Confidence            45688887 699999999999999999999999999999999999999999999998 89999999998765211     


Q ss_pred             CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                      .....++.. +.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus        79 ~~~~~~~~~-~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~  157 (265)
T 3qxz_A           79 APRNPDFSA-SPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGTA  157 (265)
T ss_dssp             CCCSSCCCS-CCSSSCGGGSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCCEECCGGGGTSCCCTTHHHHTHHHHHHH
T ss_pred             hhHHHHHHH-HHHHHHHHhCCCCEEEEECCEEehHhHHHHHHCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHH
Confidence            111112222 4566778999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCC-CcH--HHHHHHHHHhcCCCCCcch--hhhhH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSE-DPH--QDIVALLAKYSSDPEGEAP--LKLLL  299 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~-~~~--~~i~~~l~~~~~~~~~~~~--l~~~~  299 (405)
                       ++++|++||++++ |+||+++||||++||++++.+.+.+++...... .|.  ..+|+.++....... ...  ++.+.
T Consensus       158 -~A~~l~ltg~~~~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~p~a~~~~K~~l~~~~~~~l-~~~~~l~~e~  234 (265)
T 3qxz_A          158 -VAAELLLTGASFS-AQRAVETGLANRCLPAGKVLGAALRMAHDIATNVAPESAALTKRLLWDAQMTGM-SAAEVAARET  234 (265)
T ss_dssp             -HHHHHHHHCCCBC-HHHHHHHTSCSEEECHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTC-CHHHHHHHHH
T ss_pred             -HHHHHHHcCCCcC-HHHHHHCCCccEeeCHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhhcCCH-HHHHHHHHHH
Confidence             9999999999999 999999999999999999999999998875444 443  445666655332222 344  66677


Q ss_pred             HHHHHHcCCcccHHHHHHHHHhcc
Q 015541          300 PQITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       300 ~~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ..+..+|.++|..|++.++++|++
T Consensus       235 ~~~~~~~~s~d~~egi~Af~ekr~  258 (265)
T 3qxz_A          235 ADHLRLMGSQDAAEGPRAFIDGRP  258 (265)
T ss_dssp             HHHHHHHTSTHHHHHHHHHHHTSC
T ss_pred             HHHHHHhCChHHHHHHHHHHcCCC
Confidence            788899999989999999999997

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=100.00  E-value=1.1e-50  Score=390.69  Aligned_cols=253  Identities=22%  Similarity=0.244  Sum_probs=206.2

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhh--hCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQ--KDR  142 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~--~~~  142 (405)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.....  .+.
T Consensus        10 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~   87 (274)
T 3tlf_A           10 FDTIKYEV-DGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTG-RAFCSGADVKEIPEDGKVIYER   87 (274)
T ss_dssp             CSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TEEECCBC--------------
T ss_pred             CCceEEEE-ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEeCCC-CCcccCcCHHHHhhcccccccc
Confidence            45688887 699999999999999999999999999999999999999999999998 89999999999865321  000


Q ss_pred             CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCC
Q 015541          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (405)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G  222 (405)
                      .......++...+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| +|++++|+|++|
T Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p-~g~~~~L~r~vG  166 (274)
T 3tlf_A           88 PYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVA-GRELVRVSRVLP  166 (274)
T ss_dssp             CTTCSGGGGSCCCTTCCCTTSCCSCEEEEECSEEEGGGHHHHHHSSEEEEETTCEEECCGGGGTCCC-CHHHHHHTTTSC
T ss_pred             chhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCccc-chHHHHHHHHhC
Confidence            0011111222334566778999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             hHHHHHHHHhcCC--CCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhh
Q 015541          223 GGSVGAYLGMTGK--RISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLL  298 (405)
Q Consensus       223 ~~~~a~~l~ltG~--~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~  298 (405)
                      .. ++++|++||+  +++ |+||+++||||++||++++.+.+.++++......|.  ..+|+.++..... .....++.+
T Consensus       167 ~~-~A~~l~ltg~~~~~~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~l~~~l~~e  243 (274)
T 3tlf_A          167 RS-IALRMALMGKHERMS-AQRAYELGLISEIVEHDRLLERAHEIADIVNSNAPLAVRGTRLAILKGLNV-PLHEAEILA  243 (274)
T ss_dssp             HH-HHHHHHHHGGGCCEE-HHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTS-CHHHHHHHH
T ss_pred             HH-HHHHHHHcCCCCccC-HHHHHHCCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence            97 9999999999  999 999999999999999999999999999885544443  4455555554322 223455666


Q ss_pred             HHHHHHHcCCcccHHHHHHHHHhcc
Q 015541          299 LPQITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       299 ~~~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ...+..+|.+++..|++.++++|+.
T Consensus       244 ~~~~~~~~~s~d~~eg~~af~ekr~  268 (274)
T 3tlf_A          244 ETFRERVLRTEDAAEGPRAFVEKRQ  268 (274)
T ss_dssp             HHHHHHHHTSHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHhcCHHHHHHHHHHhcCCC
Confidence            7778899999989999999999987

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=4.2e-51  Score=391.72  Aligned_cols=249  Identities=22%  Similarity=0.261  Sum_probs=209.3

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||+| +.||+|+|++++........ .
T Consensus         8 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~-~   84 (265)
T 3swx_A            8 YETLRIRR-DGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEG-PLFTAGLDLASVAAEIQGGA-S   84 (265)
T ss_dssp             CSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCHHHHHHHHC--C-C
T ss_pred             CceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCcccCcChHHHhhcccchh-H
Confidence            56788887 699999999999999999999999999999999999999999999998 67999999999876432111 1


Q ss_pred             CchHHHHHHHHHHHHHH-HhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541          145 PLVPKVFTAEYSLICKI-SEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (405)
Q Consensus       145 ~~~~~~~~~~~~l~~~i-~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~  223 (405)
                      ...    ...++++..+ .++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.
T Consensus        85 ~~~----~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~  160 (265)
T 3swx_A           85 LTP----EGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAGW  160 (265)
T ss_dssp             CCC----TTCCCTTCCSSCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTSCCCSSHHHHHHHHHCH
T ss_pred             HHH----HHHHHHHHHHHHhCCCCEEEEEcCeeehHHHHHHHHCCEEEEcCCCEEECcccccccCCCccHHHHHHHHhhH
Confidence            111    1112234467 89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHH
Q 015541          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQ  301 (405)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~  301 (405)
                      . ++++|++||++++ |+||+++||||++||++++.+.+.++++......|.  ..+|+.++..... .....++.+...
T Consensus       161 ~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~-~~~~~~~~e~~~  237 (265)
T 3swx_A          161 G-NAMRWMLTADTFD-AVEAHRIGIVQEIVPVGEHVDTAIAIAQTIARQAPLGVQATLRNARLAVRE-GDAAAEEQLVPT  237 (265)
T ss_dssp             H-HHHHHHTTCCCEE-HHHHHHTTSCSEEESTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred             H-HHHHHHHcCCcCC-HHHHHHcCCCCEecChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC-CHHHHHHHHHHH
Confidence            7 9999999999999 999999999999999999999999998875444443  4455555543221 113345566677


Q ss_pred             HHHHcCCcccHHHHHHHHHhcc
Q 015541          302 ITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       302 i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      +..+|.+++..|++.++++|+.
T Consensus       238 ~~~~~~s~d~~eg~~af~ekr~  259 (265)
T 3swx_A          238 VRELFTSEDATLGVQAFLSRTT  259 (265)
T ss_dssp             HHHHHTSHHHHHHHHHHHTTCC
T ss_pred             HHHHhCCHHHHHHHHHHhcCCC
Confidence            8899999889999999999987

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=6.9e-50  Score=387.96  Aligned_cols=260  Identities=17%  Similarity=0.217  Sum_probs=207.4

Q ss_pred             CCCccEEEEEeeCcEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhC
Q 015541           63 GAEEFVKGNVHPNGVAVITLD-RPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD  141 (405)
Q Consensus        63 ~~~~~i~~~~~~~~v~~ItLn-rp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~  141 (405)
                      ..++.|.++. +++|++|||| ||+++|+||.+|+.+|.++++.++.|+. |+|||||.| ++||+|+|++++.......
T Consensus        20 ~~~~~v~~~~-~~~v~~itln~rp~~~Nal~~~m~~~L~~al~~~~~d~~-r~vVltg~G-~~FcaG~Dl~~~~~~~~~~   96 (291)
T 2fbm_A           20 STYRDIVVKK-EDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDS-KLVLFSAAG-SVFCCGLDFGYFVKHLRNN   96 (291)
T ss_dssp             -CCSSEEEEE-CSSEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSSC-SEEEEEECS-SCSBCCBCHHHHHHHHHHC
T ss_pred             CCcceEEEEE-eCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCC-eEEEEECCC-CCccCCcCHHHHHhccccc
Confidence            4567788887 6899999999 7999999999999999999999999875 999999997 8999999999986522111


Q ss_pred             CCCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCC
Q 015541          142 RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGP  221 (405)
Q Consensus       142 ~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~  221 (405)
                       .......+......++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++
T Consensus        97 -~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~v  175 (291)
T 2fbm_A           97 -RNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMM  175 (291)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHH
T ss_pred             -chhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEECcHHhcCCCCcccHHHHHHHHH
Confidence             0011233445566788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHHhcCCCC--CcchhhhhH
Q 015541          222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPE--GEAPLKLLL  299 (405)
Q Consensus       222 G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~--~~~~l~~~~  299 (405)
                      |.. ++++|+|||++++ |+||+++||||+|||++++.+.+.+++... +..|+.++...++.+.....  ....++.+.
T Consensus       176 G~~-~A~el~ltg~~i~-A~eA~~~GLV~~vv~~~~l~~~a~~~a~~l-a~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~  252 (291)
T 2fbm_A          176 GKA-SANEMLIAGRKLT-AREACAKGLVSQVFLTGTFTQEVMIQIKEL-ASYNPIVLEECKALVRCNIKLELEQANEREC  252 (291)
T ss_dssp             CHH-HHHHHHTSCCEEE-HHHHHHTTSCSEEECSTTSHHHHHHHHHHH-TTSCHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             hHH-HHHHHHHcCCccC-HHHHHHCCCcceecChhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhhhccCHHHHHHHHH
Confidence            987 9999999999999 999999999999999999999999999875 44455444444444332211  123344566


Q ss_pred             HHHHHHcCCcccHHHHHHH-HHhccCCccchhhHHHHH
Q 015541          300 PQITSCFSSEKSVRQIIEE-LKKHQSSAETSVAQWADE  336 (405)
Q Consensus       300 ~~i~~~f~~~~~ve~i~~~-Le~~~~~~~~~~~~wa~~  336 (405)
                      ..+..+|.+++..|++.++ ++|+.       +.|..+
T Consensus       253 ~~~~~~~~s~d~~eg~~Af~~ekR~-------P~f~~~  283 (291)
T 2fbm_A          253 EVLRKIWSSAQGIESMLKIPLLGYK-------AAFPPR  283 (291)
T ss_dssp             HHHHHHHTSHHHHHHHHTC-------------------
T ss_pred             HHHHHHhcCHHHHHHHHHHHhcCCC-------CCCCCC
Confidence            6688899999899999999 99987       788654

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=100.00  E-value=8.5e-50  Score=384.65  Aligned_cols=247  Identities=20%  Similarity=0.258  Sum_probs=211.8

Q ss_pred             ccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCC
Q 015541           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (405)
Q Consensus        66 ~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (405)
                      +.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.....   ...
T Consensus        28 ~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~---~~~  102 (276)
T 3rrv_A           28 TEIDVRA-DGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAG-RAFSAGGDFGYLKELSA---DAD  102 (276)
T ss_dssp             TTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCHHHHHHHHH---CHH
T ss_pred             CeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CcccCCcCHHHHhhccc---chH
Confidence            4688887 699999999999999999999999999999999999999999999998 89999999999876321   112


Q ss_pred             chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHH
Q 015541          146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  225 (405)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~  225 (405)
                      ....++...+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. 
T Consensus       103 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~-  181 (276)
T 3rrv_A          103 LRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTWPLHISLL-  181 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCCSSHHHHGGGTSCHH-
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCccHHHHHHHHhCHH-
Confidence            2345666778899999999999999999999999999999999999999999999999999999999999999999997 


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHH
Q 015541          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (405)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~  303 (405)
                      ++++|++||++++ |+||+++||||++|  +++.+.+.+++.......|.  ..+|++++...... ....++.+...+.
T Consensus       182 ~A~ellltG~~i~-A~eA~~~GLv~~vv--~~l~~~a~~~A~~la~~~~~a~~~~K~~l~~~~~~~-l~~~l~~e~~~~~  257 (276)
T 3rrv_A          182 LAKEYALTGTRIS-AQRAVELGLANHVA--DDPVAEAIACAKKILELPQQAVESTKRVLNIHLERA-VLASLDYALSAES  257 (276)
T ss_dssp             HHHHHHHHCCCEE-HHHHHHHTSCSEEE--SSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCC-HHHHHHcCCHHHHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC-HHHHHHHHHHHHH
Confidence            9999999999999 99999999999999  88999999999875444443  44555555432111 1234555666788


Q ss_pred             HHcCCcccHHHHHHHHHhc
Q 015541          304 SCFSSEKSVRQIIEELKKH  322 (405)
Q Consensus       304 ~~f~~~~~ve~i~~~Le~~  322 (405)
                      .+|.+++..|++.++++|+
T Consensus       258 ~~~~s~d~~eg~~AF~ekR  276 (276)
T 3rrv_A          258 QSFVTEDFRSIVTKLADKN  276 (276)
T ss_dssp             HHTTSHHHHHHHHHHHCCC
T ss_pred             HHhCCHHHHHHHHHHHcCC
Confidence            9999998899999999875

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=100.00  E-value=1.4e-49  Score=381.43  Aligned_cols=246  Identities=20%  Similarity=0.230  Sum_probs=204.1

Q ss_pred             CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCC
Q 015541           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (405)
Q Consensus        64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (405)
                      .++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.| ++|+|||||+| ++||+|+|++++.......  
T Consensus         5 ~~~~i~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~--   79 (267)
T 3hp0_A            5 TYQTIKVRF-QASVCYITFHRPEANNTINDTLIEECLQVLNQCETS-TVTVVVLEGLP-EVFCFGADFQEIYQEMKRG--   79 (267)
T ss_dssp             CCSSEEEEE-ETTEEEEEECCGGGTTCBCSHHHHHHHHHHHHHHHS-SCCEEEEECCS-SCSBCCBCHHHHHHTTTTT--
T ss_pred             CCceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhcC-CCEEEEEECCC-CceecCcCHHHHHhcccCh--
Confidence            356788887 699999999999999999999999999999999987 69999999997 8999999999987632111  


Q ss_pred             CCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (405)
Q Consensus       144 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~  223 (405)
                       .....++...+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++| +++|+|++|.
T Consensus        80 -~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~  157 (267)
T 3hp0_A           80 -RKQASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYPACV-LPFLIRRIGR  157 (267)
T ss_dssp             -CCSCCCCHHHHHHHHHHHHSSSEEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTT-HHHHHHHHCH
T ss_pred             -HHHHHHHHHHHHHHHHHHcCCCCEEEEECCEEeehHHHHHHhCCEEEEcCCCEEECchhccCcCchhH-HHHHHHHhCH
Confidence             11122344566788899999999999999999999999999999999999999999999999999986 6789999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH---HHHHHHHHHhcCCCCCcchhhhhHH
Q 015541          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH---QDIVALLAKYSSDPEGEAPLKLLLP  300 (405)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~---~~i~~~l~~~~~~~~~~~~l~~~~~  300 (405)
                      . ++++|++||++++ |+||+++||||++||+.+  +.+.++++. +...|+   ..+|++++.... . ....++.+..
T Consensus       158 ~-~A~ellltg~~i~-A~eA~~~GLV~~vv~~~~--~~~~~~a~~-la~~~p~a~~~~K~~l~~~~~-~-~~~~~~~e~~  230 (267)
T 3hp0_A          158 Q-KAHYMTLMTKPIS-VQEASEWGLIDAFDAESD--VLLRKHLLR-LRRLNKKGIAHYKQFMSSLDH-Q-VSRAKATALT  230 (267)
T ss_dssp             H-HHHHHHHHCCCBC-HHHHHHHTSSSCBCSCTT--HHHHHHHHH-HTTSCHHHHHHHHHHHHHHCC-H-HHHHHHHHHH
T ss_pred             H-HHHHHHHcCCCCC-HHHHHHCCCcceecCCHH--HHHHHHHHH-HHhCCHHHHHHHHHHHHhccc-c-hHHHHHHHHH
Confidence            7 9999999999999 999999999999998644  346677766 444454   445666655421 1 1223444556


Q ss_pred             HHHHHcCCcccHHHHHHHHHhcc
Q 015541          301 QITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       301 ~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      .+..+|.++|..|++.++++|+.
T Consensus       231 ~~~~~~~s~d~~Eg~~AF~ekr~  253 (267)
T 3hp0_A          231 ANQDMFSDPQNQMGIIRYVETGQ  253 (267)
T ss_dssp             HHHHHTTSTTHHHHHHHHTTSCC
T ss_pred             HHHHHhCCHHHHHHHHHHHhcCC
Confidence            78899999989999999999998

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=100.00  E-value=4.6e-50  Score=395.49  Aligned_cols=261  Identities=16%  Similarity=0.144  Sum_probs=185.1

Q ss_pred             CCccEEEEEe-eCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCC------CcccCCChhhHHH
Q 015541           64 AEEFVKGNVH-PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPR------AFCAGMDIKGVVA  136 (405)
Q Consensus        64 ~~~~i~~~~~-~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~------~FcaG~Dl~~~~~  136 (405)
                      .++.|.+++. +++|++||||||+++|+||.+|+.+|.++|+.++.|++||+|||||+|++      +||+|+|++++..
T Consensus        53 ~~~~i~~~~~~~~gVa~ItlnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~~~FcaG~Dl~~~~~  132 (334)
T 3t8b_A           53 DLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGR  132 (334)
T ss_dssp             TCSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCSCTTTTC-
T ss_pred             CCceEEEEEeccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCCCcccCCCCHHHhhc
Confidence            3667999873 48999999999999999999999999999999999999999999999865      9999999998643


Q ss_pred             hhh---hCC---CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEe-CCeeeeCccccccccC
Q 015541          137 EIQ---KDR---NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT-EKTLLAMPENGIGLFP  209 (405)
Q Consensus       137 ~~~---~~~---~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riat-e~a~f~~PE~~iGl~P  209 (405)
                      ...   ...   .......+....+.++..|.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~A~GgG~~LalacD~riAs~~~A~f~~pe~~lGl~p  212 (334)
T 3t8b_A          133 SGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFD  212 (334)
T ss_dssp             ---------------------CCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCCTTCSSSS
T ss_pred             ccccccccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccCcchhHhhCCEEEEeCCCcEEECcccccCCCC
Confidence            110   000   000111122234567788999999999999999999999999999999999 9999999999999999


Q ss_pred             CccHHHHHhcCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcC
Q 015541          210 DVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSS  287 (405)
Q Consensus       210 ~~G~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~  287 (405)
                      ++|++++|+|++|.. ++++|+|||++|+ |+||+++||||+|||.+++.+.+.++++......|.  ..+|.+++....
T Consensus       213 ~~gg~~~L~r~vG~~-~A~ellltG~~i~-A~eA~~~GLV~~vv~~~~l~~~a~~~A~~ia~~~p~a~~~~K~~l~~~~~  290 (334)
T 3t8b_A          213 GGYGSAYLARQVGQK-FAREIFFLGRTYT-AEQMHQMGAVNAVAEHAELETVGLQWAAEINAKSPQAQRMLKFAFNLLDD  290 (334)
T ss_dssp             CCSCHHHHHHHHHHH-HHHHHHHHCCEEE-HHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTCC
T ss_pred             cccHHHHHHHHhhHH-HHHHHHHhCCcCC-HHHHHHCCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc
Confidence            999999999999997 9999999999999 999999999999999999999999999885554443  445555555422


Q ss_pred             CCCCcchhhhhHHHHHHHcCCcccHHHHHHHHHhccCCccchhhHHHH
Q 015541          288 DPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWAD  335 (405)
Q Consensus       288 ~~~~~~~l~~~~~~i~~~f~~~~~ve~i~~~Le~~~~~~~~~~~~wa~  335 (405)
                      ..  ......+...+..+|.+++..|++.++++|+.       +.|..
T Consensus       291 ~~--~~~~~~e~~~~~~~~~s~d~~Eg~~AFleKR~-------P~f~~  329 (334)
T 3t8b_A          291 GL--VGQQLFAGEATRLAYMTDEAVEGRDAFLQKRP-------PDWSP  329 (334)
T ss_dssp             CC----------------------------------------------
T ss_pred             ch--HHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCC-------CCCCC
Confidence            11  11222333456678888889999999999998       77854

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=100.00  E-value=2.8e-50  Score=387.85  Aligned_cols=250  Identities=18%  Similarity=0.126  Sum_probs=203.4

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEee-----CCCCCcccCCChhhHHHhhh
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEG-----SGPRAFCAGMDIKGVVAEIQ  139 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g-----~g~~~FcaG~Dl~~~~~~~~  139 (405)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||     +|+++||+|+|++++.....
T Consensus         9 ~~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~~~~~   87 (275)
T 4eml_A            9 YDDILYYK-AGGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGGY   87 (275)
T ss_dssp             CSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC-------
T ss_pred             CceEEEEE-ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhhcccc
Confidence            56788887 6999999999999999999999999999999999999999999999     88679999999998864110


Q ss_pred             hCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhc
Q 015541          140 KDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAK  219 (405)
Q Consensus       140 ~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r  219 (405)
                      ..    .........+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.|++++|+|
T Consensus        88 ~~----~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~~g~~~L~r  163 (275)
T 4eml_A           88 ID----DQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLAR  163 (275)
T ss_dssp             -----------CCCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHH
T ss_pred             cc----hhhHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHH
Confidence            00    00001112356777899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhh
Q 015541          220 GPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKL  297 (405)
Q Consensus       220 ~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~  297 (405)
                      ++|.. ++++|++||++++ |+||+++||||++||++++.+.+.+++.......|.  ...|++++.....  .......
T Consensus       164 ~vG~~-~A~~llltg~~i~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~--~~~~~~~  239 (275)
T 4eml_A          164 IVGQK-KAREIWYLCRQYS-AQEAERMGMVNTVVPVDRLEEEGIQWAKEILSKSPLAIRCLKAAFNADCDG--QAGLQEL  239 (275)
T ss_dssp             HHCHH-HHHHHHHHCCCEE-HHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTSH--HHHHHHH
T ss_pred             HhHHH-HHHHHHHhCCCcC-HHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc--chhHHHH
Confidence            99997 9999999999999 999999999999999999999999999885544443  3345555443110  0111122


Q ss_pred             hHHHHHHHcCCcccHHHHHHHHHhcc
Q 015541          298 LLPQITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       298 ~~~~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      +...+..+|.++|..|++.++++|+.
T Consensus       240 ~~~~~~~~~~s~d~~eg~~AF~ekR~  265 (275)
T 4eml_A          240 AGNATLLYYMTEEGSEGKQAFLEKRP  265 (275)
T ss_dssp             HHHHHHHHHTSHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHcCCC
Confidence            34456788999889999999999997

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=100.00  E-value=5.2e-50  Score=385.71  Aligned_cols=249  Identities=18%  Similarity=0.195  Sum_probs=203.0

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||+|+++||+|+|++++.... ... .
T Consensus        12 ~~~i~~~~-~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~-~~~-~   88 (273)
T 2uzf_A           12 YDEIKYEF-YEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGG-YVG-E   88 (273)
T ss_dssp             CSSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSEEEECCCCCC---------C-C
T ss_pred             CceEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCceecCcCcHhhhccc-cch-h
Confidence            55688887 68999999999999999999999999999999999999999999999833999999999875411 000 0


Q ss_pred             CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                      .....  ...+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus        89 ~~~~~--~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~  166 (273)
T 2uzf_A           89 DQIPR--LNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHK  166 (273)
T ss_dssp             SSSCC--CTHHHHHHHHHHSSSCEEEEECEEEETHHHHHHHHSSEEEEETTCEEECCGGGTTCCCCSTTTHHHHHHHCHH
T ss_pred             hhHHH--hhHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEEcCCCEEECchhhhCCCCchhHHHHHHHHhCHH
Confidence            10000  0134566788999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhH-HH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLL-PQ  301 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~-~~  301 (405)
                       ++++|++||++++ |+||+++||||++||.+++.+.+.+++.......|.  ..+|+.++.   .......+..+. ..
T Consensus       167 -~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~---~~~~~~~l~~e~~~~  241 (273)
T 2uzf_A          167 -KAREIWYLCRQYN-AQEALDMGLVNTVVPLEKVEDETVQWCKEIMKHSPTALRFLKAAMNA---DTDGLAGLQQMAGDA  241 (273)
T ss_dssp             -HHHHHHHTCCCEE-HHHHHHHTSSSEEECGGGSHHHHHHHHHHHTTSCHHHHHHHHHHHHH---HHSHHHHHHHHHHHH
T ss_pred             -HHHHHHHhCCCCC-HHHHHHcCCCccccCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHH
Confidence             9999999999999 999999999999999999999999999874444432  334555541   111123344455 56


Q ss_pred             HHHHcCCcccHHHHHHHHHhcc
Q 015541          302 ITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       302 i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      +..+|.+++..|++.++++++.
T Consensus       242 ~~~~~~s~d~~egi~af~ekr~  263 (273)
T 2uzf_A          242 TLLYYTTDEAKEGRDAFKEKRD  263 (273)
T ss_dssp             HHHHHTSHHHHHHHHHHHTTSC
T ss_pred             HHHHhcChHHHHHHHHHHhcCC
Confidence            7788888889999999999887

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=1.4e-49  Score=378.66  Aligned_cols=247  Identities=22%  Similarity=0.268  Sum_probs=206.2

Q ss_pred             EEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCch
Q 015541           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (405)
Q Consensus        68 i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (405)
                      |.++  +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.....  ......
T Consensus         2 i~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~--~~~~~~   76 (253)
T 1uiy_A            2 VQVE--KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRG-KAFSAGADLAFLERVTE--LGAEEN   76 (253)
T ss_dssp             EEEE--CSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCCCHHHHHHHTT--SCHHHH
T ss_pred             EEEE--eCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCcccCcChHHHHhccc--CCchhH
Confidence            4555  589999999999999999999999999999999999999999999997 89999999999865210  000001


Q ss_pred             HHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHH
Q 015541          148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG  227 (405)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a  227 (405)
                      ..+....+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++| +++|+|++|.. ++
T Consensus        77 ~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~-~a  154 (253)
T 1uiy_A           77 YRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALV-SVILVRAVGEK-AA  154 (253)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHHH-HHHHHHHSCHH-HH
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEcCCcEEeCcccccCcCCchH-HHHHHHHhCHH-HH
Confidence            11111256788899999999999999999999999999999999999999999999999999999 99999999997 99


Q ss_pred             HHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHHHH
Q 015541          228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQITSC  305 (405)
Q Consensus       228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~~~  305 (405)
                      ++|++||++++ |+||+++||||++||++++.+.+.++++......|.  ..+|+.++..... .....++.+...+..+
T Consensus       155 ~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~l~~e~~~~~~~  232 (253)
T 1uiy_A          155 KDLLLTGRLVE-AREAKALGLVNRIAPPGKALEEAKALAEEVAKNAPTSLRLTKELLLALPGM-GLEDGFRLAALANAWV  232 (253)
T ss_dssp             HHHHHHCCEEE-HHHHHHHTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHG
T ss_pred             HHHHHhCCccC-HHHHHHCCCcceecChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC-CHHHHHHHHHHHHHHH
Confidence            99999999999 999999999999999999999999998875444443  3455555543221 1133455566678888


Q ss_pred             cCCcccHHHHHHHHHhcc
Q 015541          306 FSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       306 f~~~~~ve~i~~~Le~~~  323 (405)
                      |.+++..|++.++++++.
T Consensus       233 ~~s~d~~eg~~af~~kr~  250 (253)
T 1uiy_A          233 RETGDLAEGIRAFFEKRP  250 (253)
T ss_dssp             GGCHHHHHHHHHHHTTSC
T ss_pred             hcCHHHHHHHHHHhCcCC
Confidence            998889999999999876

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.5e-49  Score=380.25  Aligned_cols=241  Identities=17%  Similarity=0.233  Sum_probs=199.0

Q ss_pred             CCCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCC
Q 015541           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (405)
Q Consensus        63 ~~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (405)
                      .++..|.++. +++|++||||||+++|+||.+|+.+|.++++.++.| ++|+|||||+| ++||+|+|++..        
T Consensus        18 ~~~~~i~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~G-~~FcaG~Dl~~~--------   86 (264)
T 3he2_A           18 GPGSMIGITQ-AEAVLTIELQRPERRNALNSQLVEELTQAIRKAGDG-SARAIVLTGQG-TAFCAGADLSGD--------   86 (264)
T ss_dssp             ----CEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHCC----CCSEEEEEESS-SCSBCCBCCTTC--------
T ss_pred             CCCCeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhC-CceEEEEECCC-CCccCCcCCccc--------
Confidence            4567788887 699999999999999999999999999999999988 99999999998 899999999821        


Q ss_pred             CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCC
Q 015541          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (405)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G  222 (405)
                        .....+....+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus        87 --~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG  164 (264)
T 3he2_A           87 --AFAADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVG  164 (264)
T ss_dssp             --TTGGGHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHHSSEEEECTTCEEECTHHHHTCCCCHHHHHHHHHHHC
T ss_pred             --hhhHHHHHHHHHHHHHHHhCCCCEEEEECCcEEcchhHHHHhCCEEEEcCCCEEECcccccCcCCcchHHHHHHHHhC
Confidence              112345566778889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHHhcCCCCCcchhhhhHHHH
Q 015541          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQI  302 (405)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~i  302 (405)
                      .. ++++|++||++++ |+||+++||||++++    .+.+.++++... ..|+.+++..++.+.........++.+...+
T Consensus       165 ~~-~A~~llltG~~i~-A~eA~~~GLV~~v~~----~~~a~~~A~~la-~~~p~a~~~~K~~l~~~~~~~~~~~~e~~~~  237 (264)
T 3he2_A          165 HG-RARAMLLSAEKLT-AEIALHTGMANRIGT----LADAQAWAAEIA-RLAPLAIQHAKRVLNDDGAIEEAWPAHKELF  237 (264)
T ss_dssp             HH-HHHHHHHHCCCEE-HHHHHHHTSCSEECC----HHHHHHHHHHHH-TSCHHHHHHHHHHHHTSSCSCCCCHHHHHHH
T ss_pred             HH-HHHHHHHcCCCcc-HHHHHHCCCeEEEec----HHHHHHHHHHHH-cCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            97 9999999999999 999999999999986    345666666643 3444344444433332222233455666778


Q ss_pred             HHHcCCcccHHHHHHHHHhcc
Q 015541          303 TSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       303 ~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ..+|.++|..|++.++++|++
T Consensus       238 ~~~~~s~d~~Eg~~AF~ekR~  258 (264)
T 3he2_A          238 DKAWGSQDVIEAQVARMEKRP  258 (264)
T ss_dssp             HHHHTSHHHHHHHHHHHTTSC
T ss_pred             HHHhCCHHHHHHHHHHhcCCC
Confidence            899999989999999999997

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=100.00  E-value=3.2e-50  Score=384.89  Aligned_cols=248  Identities=19%  Similarity=0.166  Sum_probs=189.8

Q ss_pred             ccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCC
Q 015541           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (405)
Q Consensus        66 ~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (405)
                      +.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.......  . 
T Consensus        11 ~~v~~~~-~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~--~-   85 (262)
T 3r9q_A           11 PAVRVEK-AGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDN-GTFCAGADLKAMGTDRGNE--L-   85 (262)
T ss_dssp             CSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCTTTTTSTTSCC--C-
T ss_pred             CEEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccCCcCHHHHhccChhh--H-
Confidence            3588887 699999999999999999999999999999999999999999999998 8999999999886522110  0 


Q ss_pred             chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHH
Q 015541          146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  225 (405)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~  225 (405)
                      ...    ....+...+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. 
T Consensus        86 ~~~----~~~~~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~-  160 (262)
T 3r9q_A           86 HPH----GPGPMGPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRLIGHS-  160 (262)
T ss_dssp             CTT----SSCTTSSTTCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTHHHHTCCCCSSHHHHHHHHHCHH-
T ss_pred             HHh----hhhHHHHHHHhCCCCEEEEECCeeehhhhHHHHhCCEEEEeCCCEEecchhccCCCCCccHHHHHHHHhCHH-
Confidence            000    011222345699999999999999999999999999999999999999999999999999999999999997 


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHH
Q 015541          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (405)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~  303 (405)
                      ++++|++||++++ |+||+++||||++||++++.+.+.++++......|.  ...|+.++.... ......++.+.. ..
T Consensus       161 ~A~~l~ltG~~~~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~-~~l~~~l~~e~~-~~  237 (262)
T 3r9q_A          161 RAMDLILTGRPVH-ANEALDIGLVNRVVARGQAREAAETLAAEIAAFPQQCVRADRDSAIAQWG-MAEEAALDNEFG-SI  237 (262)
T ss_dssp             HHHHHHHHCCCEE-HHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTT-SCHHHHHHHHHT-HH
T ss_pred             HHHHHHHcCCcCC-HHHHHHcCCccEecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc-CCHHHHHHHHHH-HH
Confidence            9999999999999 999999999999999999999999999885444443  334555544322 122334555555 67


Q ss_pred             HHcCCcccHHHHHHHHHhccCCccchhhHHH
Q 015541          304 SCFSSEKSVRQIIEELKKHQSSAETSVAQWA  334 (405)
Q Consensus       304 ~~f~~~~~ve~i~~~Le~~~~~~~~~~~~wa  334 (405)
                      .++.+ |..|++.++++|++       +.|.
T Consensus       238 ~~~~s-d~~Eg~~AF~ekr~-------p~~~  260 (262)
T 3r9q_A          238 ERVAT-EALEGAGRFAAGEG-------RHGA  260 (262)
T ss_dssp             HHHHC--------------------------
T ss_pred             HHhcc-HHHHHHHHHHcCCC-------CCCC
Confidence            78877 69999999999998       7785

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=100.00  E-value=8e-50  Score=380.99  Aligned_cols=242  Identities=21%  Similarity=0.239  Sum_probs=206.3

Q ss_pred             ccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCC
Q 015541           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (405)
Q Consensus        66 ~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (405)
                      +.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....    ...
T Consensus         7 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~----~~~   80 (256)
T 3trr_A            7 DEVLIEQ-RDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAG-GNFCAGMDLKAFVSGE----AVL   80 (256)
T ss_dssp             CSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEGG-GCCCCCBCHHHHHHTC----CCE
T ss_pred             CceEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CceecCcCHHHhcccc----chh
Confidence            4588887 699999999999999999999999999999999999999999999998 8999999999987521    111


Q ss_pred             chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHH
Q 015541          146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  225 (405)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~  225 (405)
                      ....+     .+ ..+ .+||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. 
T Consensus        81 ~~~~~-----~~-~~~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~-  152 (256)
T 3trr_A           81 SERGL-----GF-TNV-PPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQ-  152 (256)
T ss_dssp             ETTEE-----TT-SSS-CCSSCEEEEECSBCCTHHHHHHHTSSEEEEETTCEECCCGGGGTCCCCSSHHHHHHHHSCHH-
T ss_pred             hhhhh-----hH-HHh-cCCCCEEEEECCeeeechhHHHHhCCEEEECCCCEEEehhhccCCCCCccHHHHHHHHhCHH-
Confidence            11111     11 234 89999999999999999999999999999999999999999999999999999999999997 


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHH
Q 015541          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (405)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~  303 (405)
                      ++++|++||++++ |+||+++||||++||++++.+.+.++++......|.  ..+|++++..... .....++.+...+.
T Consensus       153 ~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~l~~~l~~e~~~~~  230 (256)
T 3trr_A          153 VAMELALTGESFT-AEDAAKYGFINRLVDDGQALDTALELAAKITANGPLAVAATKRIIIESASW-APEEAFAKQGEILM  230 (256)
T ss_dssp             HHHHHHHHCCCEE-HHHHGGGTCCSEEECTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHGGGS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcC-HHHHHHCCCeeEecChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC-CHHHHHHHHHHHHH
Confidence            9999999999999 999999999999999999999999999885544443  3456666554322 22344566777788


Q ss_pred             HHcCCcccHHHHHHHHHhcc
Q 015541          304 SCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       304 ~~f~~~~~ve~i~~~Le~~~  323 (405)
                      .++.+++..|++.++++|+.
T Consensus       231 ~~~~s~d~~eg~~af~ekr~  250 (256)
T 3trr_A          231 PIFVSEDAKEGAKAFAEKRA  250 (256)
T ss_dssp             HHHTSHHHHHHHHHHHTTSC
T ss_pred             HHhCCHHHHHHHHHHhcCCC
Confidence            99999989999999999987

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=3.2e-49  Score=381.53  Aligned_cols=249  Identities=16%  Similarity=0.198  Sum_probs=196.6

Q ss_pred             CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCC
Q 015541           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (405)
Q Consensus        64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (405)
                      .++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++ +|||||.| ++||+|+|++++...     .
T Consensus        24 ~~~~i~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg~g-~~FcaG~Dl~~~~~~-----~   95 (280)
T 2f6q_A           24 GFETLVVTS-EDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNG-DYYSSGNDLTNFTDI-----P   95 (280)
T ss_dssp             ECSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEEST-TCSBCCBCC----CC-----C
T ss_pred             CCCeEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeCCC-CCcccCCCHHHHhhc-----C
Confidence            456788887 689999999999999999999999999999999999999 99999997 899999999987531     1


Q ss_pred             CCc----hHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhc
Q 015541          144 TPL----VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAK  219 (405)
Q Consensus       144 ~~~----~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r  219 (405)
                      ...    ...+......++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r  175 (280)
T 2f6q_A           96 PGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPK  175 (280)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEECCCcEEECchHhhCCCCcccHHHHHHH
Confidence            111    1123344567788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHHhcCCC--CCcchhhh
Q 015541          220 GPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDP--EGEAPLKL  297 (405)
Q Consensus       220 ~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~l~~  297 (405)
                      ++|.. ++++|++||++++ |+||+++||||++||++++.+.+.+++... ...|..++...++.+....  .....++.
T Consensus       176 ~vG~~-~A~~l~ltg~~~~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~~l-a~~~~~a~~~~K~~l~~~~~~~~~~~l~~  252 (280)
T 2f6q_A          176 IMSPA-KATEMLIFGKKLT-AGEACAQGLVTEVFPDSTFQKEVWTRLKAF-AKLPPNALRISKEVIRKREREKLHAVNAE  252 (280)
T ss_dssp             HHCHH-HHHHHHTTCCCEE-HHHHHHTTSCSEEECTTTHHHHHHHHHHHH-TTSCHHHHHHHHHHHHGGGHHHHHHHHHH
T ss_pred             HhCHH-HHHHHHHcCCCCC-HHHHHHCCCcceEECHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhhhhcCHHHHHHH
Confidence            99987 9999999999999 999999999999999999999999999874 4444434433333332211  11223445


Q ss_pred             hHHHHHHHcCCcccHHHHHHHHHhcc
Q 015541          298 LLPQITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       298 ~~~~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      +...+..+|.+++..|++.++++++.
T Consensus       253 e~~~~~~~~~s~d~~eg~~af~ekR~  278 (280)
T 2f6q_A          253 ECNVLQGRWLSDECTNAVVNFLSRKS  278 (280)
T ss_dssp             HHHHHHHHHTSHHHHC----------
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHccCC
Confidence            56667888998888899999998875

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=100.00  E-value=1.1e-49  Score=383.17  Aligned_cols=249  Identities=16%  Similarity=0.226  Sum_probs=207.5

Q ss_pred             ccEEEEE---eeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCC
Q 015541           66 EFVKGNV---HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (405)
Q Consensus        66 ~~i~~~~---~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (405)
                      +.++++.   .+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||+|+++||+|+|++++...     
T Consensus         8 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~-----   82 (272)
T 1hzd_A            8 DELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKM-----   82 (272)
T ss_dssp             CSEEEEECCGGGTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTS-----
T ss_pred             CcEEEEecccccCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhcc-----
Confidence            3355543   35799999999999999999999999999999999999999999999987899999999987531     


Q ss_pred             CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCC
Q 015541          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (405)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G  222 (405)
                      .......++...+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG  162 (272)
T 1hzd_A           83 SSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIG  162 (272)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHC
T ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCCEEEEeCceEEecHHHHHHhCCEEEEcCCCEEeCchhccCCCCCchHHHHHHHHhC
Confidence            11123345566678888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChH----HHHHHHHHhhcCCCcH---HHHHHHHHHhcCCCCCcchh
Q 015541          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLG----SLKEALLAVTFSEDPH---QDIVALLAKYSSDPEGEAPL  295 (405)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~----~~~~~l~~~~~~~~~~---~~i~~~l~~~~~~~~~~~~l  295 (405)
                      .. ++++|++||++++ |+||+++||||++||++++.    +.+.+++.. +...|+   ..+|+.++..... .....+
T Consensus       163 ~~-~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~~~~~a~~~a~~-la~~~p~a~~~~K~~l~~~~~~-~~~~~l  238 (272)
T 1hzd_A          163 MS-LAKELIFSARVLD-GKEAKAVGLISHVLEQNQEGDAAYRKALDLARE-FLPQGPVAMRVAKLAINQGMEV-DLVTGL  238 (272)
T ss_dssp             HH-HHHHHHHHTCEEE-HHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHT-TTTSCHHHHHHHHHHHHHHHTS-CHHHHH
T ss_pred             HH-HHHHHHHcCCcCC-HHHHHHCCCcceecChhhhhHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHhcC-CHHHHH
Confidence            87 9999999999999 99999999999999998864    356777766 444444   3455555543221 112345


Q ss_pred             hhhHHHHHHHcCCcccHHHHHHHHHhcc
Q 015541          296 KLLLPQITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       296 ~~~~~~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ..+...+..++.+++..|++.++++++.
T Consensus       239 ~~e~~~~~~~~~s~d~~egi~af~ekr~  266 (272)
T 1hzd_A          239 AIEEACYAQTIPTKDRLEGLLAFKEKRP  266 (272)
T ss_dssp             HHHHHHHHTTTTCHHHHHHHHHHTTTSC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhcCCC
Confidence            5566667888988889999999999887

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=100.00  E-value=1.9e-50  Score=385.68  Aligned_cols=246  Identities=17%  Similarity=0.168  Sum_probs=184.9

Q ss_pred             CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCC
Q 015541           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (405)
Q Consensus        64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (405)
                      .++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| +.||+|+|++++....... .
T Consensus        10 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~-~   86 (258)
T 3lao_A           10 GPGRVTREQ-RGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHG-EHFTAGLDLMELAPKLAAS-G   86 (258)
T ss_dssp             SSCCEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCBCHHHHGGGCBTT-B
T ss_pred             CCCeEEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CCeecCcCHHHHhhccchh-h
Confidence            467788887 699999999999999999999999999999999999999999999998 6799999999987632111 0


Q ss_pred             CCchHHHHHHHHHHHHHH-HhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCC
Q 015541          144 TPLVPKVFTAEYSLICKI-SEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (405)
Q Consensus       144 ~~~~~~~~~~~~~l~~~i-~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G  222 (405)
                      ..    +....++++..+ .++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|
T Consensus        87 ~~----~~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG  162 (258)
T 3lao_A           87 FR----YPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAG  162 (258)
T ss_dssp             CC----CCTTCCCTTSCSSSCCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGTCCCSSCCCCSHHHHHHC
T ss_pred             HH----HHHHHHHHHHHHHHhCCCCEEEEECCEeEhHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhC
Confidence            11    111122344567 8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHH
Q 015541          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLP  300 (405)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~  300 (405)
                      .. ++++|++||++++ |+||+++||||++||++++.+.+.+++.......|.  ..+|+.++..... .....++.+..
T Consensus       163 ~~-~A~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~l~~e~~  239 (258)
T 3lao_A          163 WT-DAMRYILTGDEFD-ADEALRMRLLTEVVEPGEELARALEYAERIARAAPLAVRAALQSAFQGRDE-GDDAALSRVNE  239 (258)
T ss_dssp             HH-HHHHHHTTCCCEE-HHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTC-------------
T ss_pred             HH-HHHHHHHcCCCCC-HHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcC-CHHHHHHHHHH
Confidence            97 9999999999999 999999999999999999999999998875444443  4456666654322 22344555666


Q ss_pred             HHHHHcCCcccHHHHHHHH
Q 015541          301 QITSCFSSEKSVRQIIEEL  319 (405)
Q Consensus       301 ~i~~~f~~~~~ve~i~~~L  319 (405)
                      .+..++.+++..|++.+++
T Consensus       240 ~~~~~~~s~d~~eg~~AF~  258 (258)
T 3lao_A          240 SLAALIGSEDVREGVLAMV  258 (258)
T ss_dssp             -------------------
T ss_pred             HHHHHhCCHHHHHHHHhhC
Confidence            7888888887888877654

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=100.00  E-value=2.6e-49  Score=379.76  Aligned_cols=247  Identities=21%  Similarity=0.250  Sum_probs=204.3

Q ss_pred             ccEEEE----EeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhC
Q 015541           66 EFVKGN----VHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD  141 (405)
Q Consensus        66 ~~i~~~----~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~  141 (405)
                      +.+.++    . +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.| ++||+|+|++++....   
T Consensus         7 ~~v~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~---   81 (267)
T 3oc7_A            7 ALVDYAGPAAT-GGPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTG-GTFCAGADLSEAGSGG---   81 (267)
T ss_dssp             SSEEEECHHHH-SSSEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECS-SEEECCBC-----------
T ss_pred             cccCCCCccce-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CceeCCcCchhhhhcc---
Confidence            457777    4 689999999999999999999999999999999999999999999998 7999999999886211   


Q ss_pred             CCCCc---hHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHh
Q 015541          142 RNTPL---VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAA  218 (405)
Q Consensus       142 ~~~~~---~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~  218 (405)
                      .....   ...++...+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~  161 (267)
T 3oc7_A           82 SPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAIISLTLLP  161 (267)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHTT
T ss_pred             CchhhhhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeecccchHHHHHCCEEEEcCCCEEeCcccccCCCcchhHHHHHH
Confidence            11111   124667778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhh
Q 015541          219 KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLK  296 (405)
Q Consensus       219 r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~  296 (405)
                       ++|.. ++++|++||++++ |+||+++||||++  .+++.+.+.++++......|.  ..+|+.++..... .....++
T Consensus       162 -~vG~~-~A~~l~ltg~~~~-a~eA~~~GLv~~v--~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~l~~~~~  235 (267)
T 3oc7_A          162 -KLSAR-AAARYYLTGEKFD-ARRAEEIGLITMA--AEDLDAAIDQLVTDVGRGSPQGLAASKALTTAAVLE-RFDRDAE  235 (267)
T ss_dssp             -TSCHH-HHHHHHHHCCCBC-HHHHHHHTSSSEE--CSSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred             -HhCHH-HHHHHHHcCCccC-HHHHHHCCChhhh--hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcC-CHHHHHH
Confidence             89987 9999999999999 9999999999999  788999999999885444443  3445555443211 1123455


Q ss_pred             hhHHHHHHHcCCcccHHHHHHHHHhcc
Q 015541          297 LLLPQITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       297 ~~~~~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      .+...+..++.+++..|++.++++|++
T Consensus       236 ~e~~~~~~~~~s~d~~eg~~af~ekr~  262 (267)
T 3oc7_A          236 RLAEESARLFVSDEAREGMLAFLEKRS  262 (267)
T ss_dssp             HHHHHHHHHHTSHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHcCCC
Confidence            566678899999989999999999987

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=1.4e-49  Score=381.18  Aligned_cols=246  Identities=18%  Similarity=0.231  Sum_probs=201.5

Q ss_pred             CCCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCC
Q 015541           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (405)
Q Consensus        63 ~~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (405)
                      ..++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....   .
T Consensus        12 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~---~   86 (265)
T 3qxi_A           12 DTEPEVLVEQ-RDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAG-GSFCAGMDLKAFARGE---N   86 (265)
T ss_dssp             ---CCEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCCCCSBC-------C---C
T ss_pred             CCCCeEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CCeeCCCChhhhhccc---h
Confidence            3467798987 699999999999999999999999999999999999999999999998 7999999999986521   1


Q ss_pred             CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCC
Q 015541          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (405)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G  222 (405)
                      .......+     . +..+.. ||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|
T Consensus        87 ~~~~~~~~-----~-~~~~~~-~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG  159 (265)
T 3qxi_A           87 VVVEGRGL-----G-FTERPP-AKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIP  159 (265)
T ss_dssp             CEETTTEE-----T-TTTSCC-SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHSC
T ss_pred             hhhhhhhh-----h-HHHhhC-CCCEEEEECCceeHHHHHHHHhCCEEEEcCCCEEECcccccCcCCcccHHHHHHHHhC
Confidence            10000000     0 222334 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHH
Q 015541          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLP  300 (405)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~  300 (405)
                      .. ++++|++||++|+ |+||+++||||++||++++.+.+.++++......|.  ..+|++++..... .....++.+..
T Consensus       160 ~~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~-~l~~~l~~e~~  236 (265)
T 3qxi_A          160 YA-IAMELALTGDNLS-AERAHALGMVNVLAEPGAALDAAIALAEKITANGPLAVAATKRIITESRGW-SLDTRFAQQMK  236 (265)
T ss_dssp             HH-HHHHHHHHCCCEE-HHHHHHTTSCSEEECTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTC-CTTTHHHHHHH
T ss_pred             HH-HHHHHHHcCCCcC-HHHHHHCCCccEeeChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC-CHHHHHHHHHH
Confidence            97 9999999999999 999999999999999999999999999885555443  4456666654332 22445666777


Q ss_pred             HHHHHcCCcccHHHHHHHHHhcc
Q 015541          301 QITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       301 ~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      .+..++.+++..|++.++++|++
T Consensus       237 ~~~~~~~s~d~~eg~~af~ekr~  259 (265)
T 3qxi_A          237 ILFPIFTSNDAKEGAIAFAEKRP  259 (265)
T ss_dssp             HHHHHHHCHHHHHHHHHHHTTSC
T ss_pred             HHHHHhcCHHHHHHHHHHHcCCC
Confidence            78899999889999999999987

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=100.00  E-value=6.2e-49  Score=378.62  Aligned_cols=244  Identities=19%  Similarity=0.233  Sum_probs=202.0

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      ++.|.++. +++|++||||||++ |+||.+|+.+|.++++.++.|++||+|||||.| ++||+|+|++++...     ..
T Consensus        23 ~~~v~~~~-~~~Va~ItlnrP~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~-----~~   94 (277)
T 4di1_A           23 NEFVSVVA-DQGLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFGGH-EIFSAGDDMPELRTL-----NA   94 (277)
T ss_dssp             CCSEEEEE-ETTEEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCS-SCSBCCBCHHHHHTC-----CH
T ss_pred             CceEEEEE-ECCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CCEecCcCccccccc-----Ch
Confidence            45688887 69999999999999 999999999999999999999999999999996 899999999998652     11


Q ss_pred             CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                      .....+....+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|..
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~  174 (277)
T 4di1_A           95 PEADTAARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTRVVGSS  174 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeEehhHHHHHHhCCEEEEcCCCEEECcccccCCCCCchHHHHHHHHhCHH
Confidence            22345666677889999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHH---HHHHHHHhcCCCCCcchhhhhHHH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQD---IVALLAKYSSDPEGEAPLKLLLPQ  301 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~---i~~~l~~~~~~~~~~~~l~~~~~~  301 (405)
                       ++++|++||++++ |+||+++||||++||.+++.+.+.+++.. ++..|..+   +|++++.... ......++.+...
T Consensus       175 -~A~~llltG~~i~-A~eA~~~GLV~~vv~~~~l~~~a~~~a~~-la~~~~~a~~~~K~~l~~~~~-~~l~~~l~~e~~~  250 (277)
T 4di1_A          175 -RAKELVFSGRFFD-AEEALALGLIDDMVAPDDVYDSAVAWARR-YLECPPRALAAAKAVINDVFE-LEATERAAAERRR  250 (277)
T ss_dssp             -HHHHHHHHCCCEE-HHHHHHHTSCSEEECGGGHHHHHHHHHHT-TTTSCHHHHHHHHHHHHHTTT-SCHHHHHHHHHHH
T ss_pred             -HHHHHHHcCCCCC-HHHHHHCCCccEEeChhHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhhc-CCHHHHHHHHHHH
Confidence             9999999999999 99999999999999999999999999987 45545434   4555544322 2223445566667


Q ss_pred             HHHHcCCcccHHHHHHHHHhccCCccchhhH--HHHHH
Q 015541          302 ITSCFSSEKSVRQIIEELKKHQSSAETSVAQ--WADEA  337 (405)
Q Consensus       302 i~~~f~~~~~ve~i~~~Le~~~~~~~~~~~~--wa~~~  337 (405)
                      +..+|.++          ||++       |.  |..+.
T Consensus       251 ~~~~~~s~----------ekR~-------P~~~f~g~~  271 (277)
T 4di1_A          251 YVELFAAG----------QRGP-------DGRGPGGGN  271 (277)
T ss_dssp             HHHTTSGG----------GC------------------
T ss_pred             HHHHhcCc----------ccCC-------CcCcCCCCC
Confidence            88888765          7776       67  86654

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=100.00  E-value=1.7e-49  Score=377.47  Aligned_cols=245  Identities=20%  Similarity=0.175  Sum_probs=188.4

Q ss_pred             EEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEee-CCCCCcccCCChhhHHHhhhhCCCCCc
Q 015541           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEG-SGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (405)
Q Consensus        68 i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g-~g~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (405)
                      |.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+||||| .| ++||+|+|++++...    .....
T Consensus         2 v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~~g-~~F~aG~Dl~~~~~~----~~~~~   75 (250)
T 2a7k_A            2 VFEEN-SDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAE-RSFSAGGDFNEVKQL----SRSED   75 (250)
T ss_dssp             EEEEE-ETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTT-SCSBCBSCHHHHHTC-----CHHH
T ss_pred             eEEEe-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCC-CCccCCcCHHHHhhc----Cchhh
Confidence            55666 6899999999999999999999999999999999999999999999 76 899999999987641    11111


Q ss_pred             hHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHH
Q 015541          147 VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSV  226 (405)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~  226 (405)
                      ...++...+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ +|+|++|.. +
T Consensus        76 ~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~-~  153 (250)
T 2a7k_A           76 IEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAA-ILGFTHGFS-T  153 (250)
T ss_dssp             HHHHHHHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHH-HHHHHHCHH-H
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEECCeEeHHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCcHHH-HHHHHhHHH-H
Confidence            13455667788899999999999999999999999999999999999999999999999999999999 999999997 9


Q ss_pred             HHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHHH
Q 015541          227 GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQITS  304 (405)
Q Consensus       227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~~  304 (405)
                      +++|++||++++ |+||+++||||++||++++.+.+.++++......|.  ..+|+.++..... .....++.+...+..
T Consensus       154 a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~l~~e~~~~~~  231 (250)
T 2a7k_A          154 MQEIIYQCQSLD-APRCVDYRLVNQVVESSALLDAAITQAHVMASYPASAFINTKRAVNKPFIH-LLEQTRDASKAVHKA  231 (250)
T ss_dssp             HHHHHHHCCCBC-HHHHHHHTCCSEEECHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCC-
T ss_pred             HHHHHHcCCccc-HHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc-CHHHHHHHHHHHHHH
Confidence            999999999999 999999999999999999999999998875444443  3445555432111 112234444555667


Q ss_pred             HcCCcccHHHHHHHHHhc
Q 015541          305 CFSSEKSVRQIIEELKKH  322 (405)
Q Consensus       305 ~f~~~~~ve~i~~~Le~~  322 (405)
                      +|.+++..|++.++++++
T Consensus       232 ~~~s~d~~eg~~af~ekr  249 (250)
T 2a7k_A          232 AFQARDAQGHFKNVLGKK  249 (250)
T ss_dssp             ------------------
T ss_pred             HhCCHHHHHHHHHHHhcC
Confidence            788887888988888875

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=100.00  E-value=1.7e-49  Score=384.78  Aligned_cols=250  Identities=17%  Similarity=0.152  Sum_probs=212.2

Q ss_pred             CCCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCC
Q 015541           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (405)
Q Consensus        63 ~~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (405)
                      +.++.|.++. +++|++||||||+ +|+||.+|+.+|.++++.++.|++||+|||||+|+++||+|+|++++........
T Consensus         5 ~~~~~v~~~~-~~~Va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~~~~~   82 (289)
T 3h0u_A            5 ASYETIKARL-DGTVLSATFNAPP-MNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAA   82 (289)
T ss_dssp             CCCSSEEEEE-ETTEEEEEECCTT-TCCBCHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHHH
T ss_pred             CCCCeEEEEE-ECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcCcchh
Confidence            3467799987 6999999999998 7999999999999999999999999999999998666777789999876321110


Q ss_pred             CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCC-eeeeCccccccccCCccHHHHHhcCC
Q 015541          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGLFPDVGFSYIAAKGP  221 (405)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~-a~f~~PE~~iGl~P~~G~~~~L~r~~  221 (405)
                      .  ....++...+.++..|.++||||||+|||+|+|||++|+++||||||+++ ++|++||+++|++|++|++++|+|++
T Consensus        83 ~--~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~v  160 (289)
T 3h0u_A           83 K--AGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRLL  160 (289)
T ss_dssp             T--TSSTTCCSHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECTHHHHTSCCCSSHHHHHHHHH
T ss_pred             h--hHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhhHHHHHhCCEEEEeCCCcEEeCchhhcCCCCCccHHHHHHHHh
Confidence            0  00012334567788999999999999999999999999999999999998 99999999999999999999999999


Q ss_pred             ChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhH
Q 015541          222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLL  299 (405)
Q Consensus       222 G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~  299 (405)
                      |.. ++++|++||++|+ |+||+++||||++||++++.+.+.++++......|.  ..+|+.++....  .....++.+.
T Consensus       161 G~~-~A~ellltG~~i~-A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~a~~~~K~~l~~~~~--~l~~~l~~e~  236 (289)
T 3h0u_A          161 GRG-RALEAVLTSSDFD-ADLAERYGWVNRAVPDAELDEFVAGIAARMSGFPRDALIAAKSAINAISL--PAPAEVRADA  236 (289)
T ss_dssp             CHH-HHHHHHHHCCCEE-HHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHS--CCHHHHHHHH
T ss_pred             CHH-HHHHHHHcCCCCC-HHHHHHCCCccEecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc--cHHHHHHHHH
Confidence            997 9999999999999 999999999999999999999999999885444443  455666665433  2345566677


Q ss_pred             HHHHHHcCCcccHHHHHHHHH
Q 015541          300 PQITSCFSSEKSVRQIIEELK  320 (405)
Q Consensus       300 ~~i~~~f~~~~~ve~i~~~Le  320 (405)
                      ..+..+|.+++..|++.++++
T Consensus       237 ~~~~~~~~s~d~~egi~AFle  257 (289)
T 3h0u_A          237 ALFQQLVRGEKVQQRTAELFK  257 (289)
T ss_dssp             HHHHHHTTSHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHhC
Confidence            788899999989999999999

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=100.00  E-value=1.5e-49  Score=379.98  Aligned_cols=248  Identities=23%  Similarity=0.253  Sum_probs=205.3

Q ss_pred             CccEEEEE--eeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCC
Q 015541           65 EEFVKGNV--HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (405)
Q Consensus        65 ~~~i~~~~--~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (405)
                      ++.+.++.  ..++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++...     
T Consensus         3 ~~~~~~~~~v~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~-----   76 (260)
T 1mj3_A            3 FQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGE-KAFAAGADIKEMQNR-----   76 (260)
T ss_dssp             CSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCS-SEEECCBCHHHHTTC-----
T ss_pred             cccceeecccCcCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCC-CCccCCcChHhhhcc-----
Confidence            45576765  2578999999999999999999999999999999999999999999997 899999999986431     


Q ss_pred             CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCC
Q 015541          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG  222 (405)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G  222 (405)
                        .....+....+..+..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|
T Consensus        77 --~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG  154 (260)
T 1mj3_A           77 --TFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVG  154 (260)
T ss_dssp             --CHHHHHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHC
T ss_pred             --cchHHHHHHHHHHHHHHHhCCCCEEEEECCEEEeHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhC
Confidence              011111111223355788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHH
Q 015541          223 GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLP  300 (405)
Q Consensus       223 ~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~  300 (405)
                      .. ++++|++||++++ |+||+++||||++||++++.+.+.++++......|.  ..+|++++..... .....+..+..
T Consensus       155 ~~-~a~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~l~~e~~  231 (260)
T 1mj3_A          155 KS-LAMEMVLTGDRIS-AQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAKESVNAAFEM-TLTEGNKLEKK  231 (260)
T ss_dssp             HH-HHHHHHHHCCCEE-HHHHHHHTSCSEEECTTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHGGGSS-CHHHHHHHHHH
T ss_pred             HH-HHHHHHHcCCcCC-HHHHHHcCCccEEeChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC-CHHHHHHHHHH
Confidence            97 9999999999999 999999999999999999999999998875444443  3445555443221 22334555666


Q ss_pred             HHHHHcCCcccHHHHHHHHHhcc
Q 015541          301 QITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       301 ~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      .+..+|.+++..|++.++++++.
T Consensus       232 ~~~~~~~s~d~~egi~af~~kr~  254 (260)
T 1mj3_A          232 LFYSTFATDDRREGMSAFVEKRK  254 (260)
T ss_dssp             HHHHGGGSHHHHHHHHHHHTTSC
T ss_pred             HHHHHhcCHHHHHHHHHHHcCCC
Confidence            78889988889999999998876

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=100.00  E-value=6.3e-49  Score=376.25  Aligned_cols=251  Identities=21%  Similarity=0.268  Sum_probs=198.3

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhh-hCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQ-KDRN  143 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~-~~~~  143 (405)
                      ++.+.++..+++|++||||||++ |+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..... ....
T Consensus         5 ~~~~~~~~~~~~v~~itlnrP~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~   82 (263)
T 3l3s_A            5 QDGLLGEVLSEGVLTLTLGRAPA-HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPG-RIFCAGHDLKEIGRHRADPDEG   82 (263)
T ss_dssp             ---CEEEEESSSEEEEEECSTTT-CCCCHHHHHHHHHHHHHHHTCTTCCEEEEECCS-SEEECCSCSCCCCC-----CCS
T ss_pred             ccceEEEEeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccCCcChHHHhhcccccccc
Confidence            34566776679999999999999 999999999999999999999999999999998 99999999998764210 0111


Q ss_pred             CCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (405)
Q Consensus       144 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~  223 (405)
                      ......++...+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ +.|++++|+|++|.
T Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~-~~g~~~~l~r~vG~  161 (263)
T 3l3s_A           83 RAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGF-CTTPAVAVSRVIGR  161 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSSCEEEEESSEEETHHHHHHHHSSEEEECTTCEEECCTTTTTSC-CHHHHHHHHTTSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEHHHHHHHHHCCEEEecCCCEEeCchhccCCC-CccHHHHHHHHcCH
Confidence            12335567778889999999999999999999999999999999999999999999999999999 57899999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHH
Q 015541          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQ  301 (405)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~  301 (405)
                      . ++++|++||++++ |+||+++||||++||++++.+.+.++++......|.  ..+|+.++.... ......++.+...
T Consensus       162 ~-~A~~l~ltg~~~~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~l~~~l~~e~~~  238 (263)
T 3l3s_A          162 R-AVTEMALTGATYD-ADWALAAGLINRILPEAALATHVADLAGALAARNQAPLRRGLETLNRHLE-LPLEQAYALATPV  238 (263)
T ss_dssp             H-HHHHHHHHCCEEE-HHHHHHHTSSSEECCHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHH
T ss_pred             H-HHHHHHHcCCCCC-HHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc-CCHHHHHHHHHHH
Confidence            7 9999999999999 999999999999999999999999999875544443  445555555422 2223455666778


Q ss_pred             HHHHcCCcccHHHHHHHHHh
Q 015541          302 ITSCFSSEKSVRQIIEELKK  321 (405)
Q Consensus       302 i~~~f~~~~~ve~i~~~Le~  321 (405)
                      +..+|.+++..|++.++.+.
T Consensus       239 ~~~~~~s~d~~Eg~~Af~~~  258 (263)
T 3l3s_A          239 MVEHFMDPGRRHLDWIDEGH  258 (263)
T ss_dssp             HHHHHC--------------
T ss_pred             HHHHhCCHHHHHHHHHhhcc
Confidence            89999999777777776654

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=100.00  E-value=1.3e-48  Score=372.19  Aligned_cols=237  Identities=15%  Similarity=0.136  Sum_probs=203.6

Q ss_pred             EEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCch
Q 015541           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (405)
Q Consensus        68 i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (405)
                      |.++. +++|++||||||+++|+||.+|+.+|.++++.++. +++|+|||||.| ++||+|+|++++...     .....
T Consensus         9 v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~-~~vr~vVltg~g-~~F~aG~Dl~~~~~~-----~~~~~   80 (254)
T 3isa_A            9 LAIER-RPAAWTFTLSRPEKRNALSAELVEALIDGVDAAHR-EQVPLLVFAGAG-RNFSAGFDFTDYETQ-----SEGDL   80 (254)
T ss_dssp             EEEEE-CSSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHH-TTCSEEEEEEST-TCSCCCBCCTTCTTS-----CHHHH
T ss_pred             EEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEECCC-CceeeCcChHHhhcc-----CchhH
Confidence            88887 69999999999999999999999999999999987 589999999997 899999999987541     11112


Q ss_pred             HHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHH
Q 015541          148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG  227 (405)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a  227 (405)
                      ..++...+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|   ++++|+|++|.. ++
T Consensus        81 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p---g~~~l~~~vG~~-~A  156 (254)
T 3isa_A           81 LLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVL---GTRRFRDIVGAD-QA  156 (254)
T ss_dssp             HHHHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCC---SHHHHHHHHCHH-HH
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCeEeecchhHHHhCCEEEEcCCCEEECchhccCccH---HHHHHHHHcCHH-HH
Confidence            23445567788999999999999999999999999999999999999999999999999998   479999999997 99


Q ss_pred             HHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHHhcCCCCCcchhhhhHHHHHHHcC
Q 015541          228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFS  307 (405)
Q Consensus       228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~i~~~f~  307 (405)
                      ++|++||++++ |+||+++||||++||++++.+.+.++++. +...|..++..+++.+..     ..++.+...+..+|.
T Consensus       157 ~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~-la~~~~~a~~~~K~~l~~-----~~~~~e~~~~~~~~~  229 (254)
T 3isa_A          157 LSILGSARAFD-ADEARRIGFVRDCAAQAQWPALIDAAAEA-ATALDPATRATLHRVLRD-----DHDDADLAALARSAA  229 (254)
T ss_dssp             HHHHTTTCEEE-HHHHHHTTSSSEECCGGGHHHHHHHHHHH-HTTSCHHHHHHHHHHHSC-----CCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCc-HHHHHHCCCccEEeChhHHHHHHHHHHHH-HHcCCHHHHHHHHHHHhh-----hhHHHHHHHHHHHhC
Confidence            99999999999 99999999999999999999999999987 455565566655555422     234556667888998


Q ss_pred             CcccHHHHHHHHHhcc
Q 015541          308 SEKSVRQIIEELKKHQ  323 (405)
Q Consensus       308 ~~~~ve~i~~~Le~~~  323 (405)
                      +++..|++.+++++++
T Consensus       230 s~d~~egi~af~ekr~  245 (254)
T 3isa_A          230 QPGFKARIRDYLAQPA  245 (254)
T ss_dssp             STTHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHhcCC
Confidence            8889999999999998

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=100.00  E-value=9.5e-50  Score=380.33  Aligned_cols=240  Identities=20%  Similarity=0.307  Sum_probs=184.1

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      ++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++...       
T Consensus         8 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~g-~~F~aG~Dl~~~~~~-------   78 (256)
T 3pe8_A            8 SPVLLVDT-TDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGAD-PVFCAGLDLKELGDT-------   78 (256)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEEST-TCSBCCBCTTTC----------
T ss_pred             CCcEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCC-CCccCCcCHHHHhhh-------
Confidence            56688887 699999999999999999999999999999999999999999999997 899999999987641       


Q ss_pred             CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                         .    ....+...+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|..
T Consensus        79 ---~----~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~  151 (256)
T 3pe8_A           79 ---T----ELPDISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVG  151 (256)
T ss_dssp             -------------CCCCCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSSHHHHHHHHHCHH
T ss_pred             ---H----HHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEcCCCEEECchhhhCCCCcccHHHHHHHhcCHH
Confidence               0    011233568899999999999999999999999999999999999999999999999999999999999997


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQI  302 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i  302 (405)
                       ++++|++||++++ |+||+++||||++||.+++.+.+.+++.......|.  ..+|+.++..... .....++.+...+
T Consensus       152 -~A~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~-~~~~~l~~e~~~~  228 (256)
T 3pe8_A          152 -LARRMSLTGDYLS-AQDALRAGLVTEVVAHDDLLTAARRVAASIVGNNQKAVRALLDSYHRIDAL-QTGGALWAEAEAA  228 (256)
T ss_dssp             -HHHHHHHHCCCEE-HHHHHHHTSCSCEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred             -HHHHHHHcCCCCC-HHHHHHCCCCeEEeCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC-CHHHHHHHHHHHH
Confidence             9999999999999 999999999999999999999999999885544443  3445555433211 1122344444443


Q ss_pred             HH---HcCCcccHHHHHHHHHhcc
Q 015541          303 TS---CFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       303 ~~---~f~~~~~ve~i~~~Le~~~  323 (405)
                      ..   .+..++-.|.+.+++++++
T Consensus       229 ~~~~~~~~~~d~~e~~~aflek~k  252 (256)
T 3pe8_A          229 RQWMRSTSGDDIAASRASVIERGR  252 (256)
T ss_dssp             HHHHHHC-----------------
T ss_pred             HHHhhcccchHHHHHHHHHHhccC
Confidence            33   3445446889999999887

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=100.00  E-value=7.3e-49  Score=375.20  Aligned_cols=246  Identities=18%  Similarity=0.250  Sum_probs=201.6

Q ss_pred             EEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCch
Q 015541           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (405)
Q Consensus        68 i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (405)
                      |.++. +++|++||||||+ +|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++..     ......
T Consensus         7 v~~~~-~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~-----~~~~~~   79 (260)
T 1sg4_A            7 VEPDA-GAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCG-----RSPAHY   79 (260)
T ss_dssp             EEEET-TTTEEEEEECCTT-TTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSS-----CCHHHH
T ss_pred             EEEEe-cCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhc-----cCHHHH
Confidence            44443 5899999999997 6999999999999999999999999999999995589999999998753     111123


Q ss_pred             HHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEe--CCeeeeCccccccccCCccHHHHHhcCCChHH
Q 015541          148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT--EKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  225 (405)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riat--e~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~  225 (405)
                      ..++...+.++..|.++||||||+|||+|+|||++|+++||||||+  ++++|++||+++|++|++|++++|+|++|.. 
T Consensus        80 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~-  158 (260)
T 1sg4_A           80 AGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHR-  158 (260)
T ss_dssp             HHHHHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHH-
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEEecCCCCEEeCchhhhCCCCchhHHHHHHHHhCHH-
Confidence            3455667788899999999999999999999999999999999999  8999999999999999999999999999997 


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHH
Q 015541          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQIT  303 (405)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~  303 (405)
                      ++++|++||++++ |+||+++||||++||.+++.+.+.+++.......|.  ..+|+.++...... ....++.+...+.
T Consensus       159 ~a~~llltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~-~~~~~~~e~~~~~  236 (260)
T 1sg4_A          159 AAERALQLGLLFP-PAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIPDHARQLTKAMMRKATASR-LVTQRDADVQNFV  236 (260)
T ss_dssp             HHHHHHHHTCCBC-HHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH-HHTTHHHHHHHHH
T ss_pred             HHHHHHHcCCcCC-HHHHHHcCCCCEecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc-HHHHHHHHHHHHH
Confidence            9999999999999 999999999999999999999999999875444443  34455554421111 1223445566678


Q ss_pred             HHcCCcccHHHHHHHHHhcc
Q 015541          304 SCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       304 ~~f~~~~~ve~i~~~Le~~~  323 (405)
                      .+|.+++..|++.++++++.
T Consensus       237 ~~~~s~d~~eg~~af~ekr~  256 (260)
T 1sg4_A          237 SFISKDSIQKSLQMYLERLK  256 (260)
T ss_dssp             HHHTSHHHHHHHTC------
T ss_pred             HHhCCHHHHHHHHHHHHhhc
Confidence            88998888899999998876

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=100.00  E-value=1.6e-47  Score=369.73  Aligned_cols=246  Identities=15%  Similarity=0.129  Sum_probs=196.2

Q ss_pred             CCCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCC
Q 015541           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (405)
Q Consensus        63 ~~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (405)
                      |.++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++........
T Consensus         6 m~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~~   83 (280)
T 1pjh_A            6 RQNEKISYRI-EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSG-RFFSSGADFKGIAKAQGDDT   83 (280)
T ss_dssp             CCBTTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TBSBCCBCHHHHHC------
T ss_pred             ccCCceEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCccCCcCHHHHhhcccccc
Confidence            3466788887 689999999999999999999999999999999999999999999997 89999999998754211010


Q ss_pred             --CCCch----HHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEe-CCeeeeCccccccccCCccHHH
Q 015541          143 --NTPLV----PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT-EKTLLAMPENGIGLFPDVGFSY  215 (405)
Q Consensus       143 --~~~~~----~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riat-e~a~f~~PE~~iGl~P~~G~~~  215 (405)
                        .....    ..++...+.++..|.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++|+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~~lGl~p~~g~~~  163 (280)
T 1pjh_A           84 NKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTV  163 (280)
T ss_dssp             -CCSSHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHH
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchhhcCCCCCccHHH
Confidence              01111    1223334678889999999999999999999999999999999999 9999999999999999999999


Q ss_pred             HHhcCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCC-----ChHHHH-HHHHHhhcCCCcHHHHHHHHHHhcCCC
Q 015541          216 IAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSG-----NLGSLK-EALLAVTFSEDPHQDIVALLAKYSSDP  289 (405)
Q Consensus       216 ~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~-----~l~~~~-~~l~~~~~~~~~~~~i~~~l~~~~~~~  289 (405)
                      +|+|++|.. ++++|++||++++ |+||+++||||++||.+     ++.+.+ .+++.. +...|+.++...++.+....
T Consensus       164 ~l~r~vG~~-~A~~llltg~~~~-a~eA~~~GLv~~vv~~~~~~~~~l~~~a~~~~a~~-la~~~~~a~~~~K~~l~~~~  240 (280)
T 1pjh_A          164 SLPLKFGTN-TTYECLMFNKPFK-YDIMCENGFISKNFNMPSSNAEAFNAKVLEELREK-VKGLYLPSCLGMKKLLKSNH  240 (280)
T ss_dssp             HHHHHHCHH-HHHHHHHTTCCEE-HHHHHHTTCCSEECCCCTTCHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHTTT
T ss_pred             HHHHHhCHH-HHHHHHHhCCCCC-HHHHHHCCCcceeeCCccccHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhH
Confidence            999999997 9999999999999 99999999999999986     577666 478776 45555545555544443211


Q ss_pred             CCcchhhhhHHHHHHHcCCcccHHHHHHHHHhcc
Q 015541          290 EGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       290 ~~~~~l~~~~~~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                        ...+       ... .+++..+++.++++++.
T Consensus       241 --~~~l-------~~~-~~~d~~e~~~af~~kr~  264 (280)
T 1pjh_A          241 --IDAF-------NKA-NSVEVNESLKYWVDGEP  264 (280)
T ss_dssp             --HHHH-------HHH-HHHHHHHHHHHHHHTHH
T ss_pred             --HHHH-------HHh-hhHHHHHHHHHHhCCcc
Confidence              1111       111 23336777778887775

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=100.00  E-value=6.6e-47  Score=369.41  Aligned_cols=254  Identities=14%  Similarity=0.138  Sum_probs=206.2

Q ss_pred             CCccEEEEE-eeCcEEEEEEcCCCC----CCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEeeCCCCCcccCCChhh
Q 015541           64 AEEFVKGNV-HPNGVAVITLDRPKA----LNAMNLDMDIKYKSFLDEWES-----DPRVKCVLIEGSGPRAFCAGMDIKG  133 (405)
Q Consensus        64 ~~~~i~~~~-~~~~v~~ItLnrp~~----~Nal~~~m~~~L~~~l~~~~~-----d~~v~~vvl~g~g~~~FcaG~Dl~~  133 (405)
                      .++.|.+.. .+++|++||||||++    +|+||.+|+.+|.++++.++.     |++||+|||+|.| ++||+|+|+++
T Consensus        28 ~y~~i~v~~~~~~~V~~itLnrp~k~n~~rpal~~~m~~eL~~al~~~~~d~~~~d~~vr~vVltg~G-~~FcaG~Dl~~  106 (305)
T 3m6n_A           28 IGSTLRIIEEPQRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDS-DVFNLGGDLAL  106 (305)
T ss_dssp             -CTTEEEEEETTTTEEEEEECTTC-----CCSBCHHHHHHHHHHHHHHHHHHHHHTCSSCEEEEEESS-SSSBCCBCHHH
T ss_pred             CCceEEEEEEEECCEEEEEECCccccCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCeEEEEEECCC-CCeecCcCHHH
Confidence            366676654 368999999999998    459999999999999999987     5899999999986 89999999999


Q ss_pred             HHHhhhhCCCCCchHHHHHHHHHHHHHH---HhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCC
Q 015541          134 VVAEIQKDRNTPLVPKVFTAEYSLICKI---SEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPD  210 (405)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i---~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~  210 (405)
                      +....... .......++...+..+..+   ..+||||||+|||+|+|||++|+++||||||+++++|++||+++|++|+
T Consensus       107 ~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~  185 (305)
T 3m6n_A          107 FCQLIREG-DRARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPG  185 (305)
T ss_dssp             HHHHHHHT-CHHHHHHHHHHHHHHHHHHHTGGGTTCEEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCC
T ss_pred             HHhccccc-cHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEECchhccCcCCC
Confidence            87643211 1112334555556665555   4689999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHhcCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCC
Q 015541          211 VGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSD  288 (405)
Q Consensus       211 ~G~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~  288 (405)
                      +|++++|+|++|.. ++++|++||++|+ |+||+++||||+|||++++.+.+.+++... +..|.  ..+|+.++.... 
T Consensus       186 ~g~~~~L~r~vG~~-~A~~llltG~~i~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~~l-a~~p~a~~~~K~~l~~~~~-  261 (305)
T 3m6n_A          186 MGAYSFMCQRISAH-LAQKIMLEGNLYS-AEQLLGMGLVDRVVPRGQGVAAVEQVIRES-KRTPHAWAAMQQVREMTTA-  261 (305)
T ss_dssp             SSHHHHHTTTSCHH-HHHHHHHHCCEEE-HHHHHHHTSCSEEECTTCHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTTC-
T ss_pred             ccHHHHHHHHhcHH-HHHHHHHcCCCCC-HHHHHHCCCCCEecChhHHHHHHHHHHHHH-hhChHHHHHHHHHHHhhhc-
Confidence            99999999999997 9999999999999 999999999999999999999999999885 44443  334444443322 


Q ss_pred             CCCcchhhhhHHHHHHHcCCcccHHHHHHHHHhcc
Q 015541          289 PEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       289 ~~~~~~l~~~~~~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ......++.+...+..+|.+++....++++|-..+
T Consensus       262 ~~l~~~l~~e~~~~~~~~~s~d~~~~~m~~l~~~q  296 (305)
T 3m6n_A          262 VPLEEMMRITEIWVDTAMQLGEKSLRTMDRLVRAQ  296 (305)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHH
Confidence            12234566677789999999877777777775543

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=100.00  E-value=2.6e-48  Score=367.88  Aligned_cols=234  Identities=15%  Similarity=0.155  Sum_probs=193.4

Q ss_pred             EEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCch
Q 015541           68 VKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLV  147 (405)
Q Consensus        68 i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~  147 (405)
                      +.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.... .. .. . 
T Consensus         5 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~-~~-~~-~-   78 (243)
T 2q35_A            5 QLTEL-GNGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYG-NYFSSGASKEFLIRKT-RG-EV-E-   78 (243)
T ss_dssp             EEEEE-ETTEEEEEECCGGGTSBSCHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TEEECBSCHHHHHHHH-TT-CC-C-
T ss_pred             EEEEe-eCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCeeCCCChHHHhhcc-ch-hh-H-
Confidence            33444 689999999999999999999999999999999999999999999997 8999999999886532 11 11 0 


Q ss_pred             HHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHH
Q 015541          148 PKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVG  227 (405)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a  227 (405)
                            .++++..|.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. ++
T Consensus        79 ------~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~-~a  151 (243)
T 2q35_A           79 ------VLDLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGFTPVGATSLILREKLGSE-LA  151 (243)
T ss_dssp             ------CCCCHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEESSSEEECCHHHHTSCCCSSHHHHHHHHHCHH-HH
T ss_pred             ------HHHHHHHHHhCCCCEEEEEcCccccchHHHHHhCCEEEEeCCCEEECCccccCCCCcchHHHHHHHHhCHH-HH
Confidence                  13456689999999999999999999999999999999999999999999999999999999999999987 99


Q ss_pred             HHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHHHH
Q 015541          228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQITSC  305 (405)
Q Consensus       228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~~~  305 (405)
                      ++|++||++++ |+||+++||||++||++++.+.+.++++......|.  ..+|+.++..... .....++.+...+..+
T Consensus       152 ~~l~ltg~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~e~~~~~~~  229 (243)
T 2q35_A          152 QEMIYTGENYR-GKELAERGIPFPVVSRQDVLNYAQQLGQKIAKSPRLSLVALKQHLSADIKA-KFPEAIKKELEIHQVT  229 (243)
T ss_dssp             HHHHHHCCCEE-HHHHHHTTCSSCEECHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCC-HHHHHHcCCCCEecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc-CHHHHHHHHHHHHHHH
Confidence            99999999999 999999999999999999999999999874444432  3345555432111 1123344555667788


Q ss_pred             cCCcccHHHHH
Q 015541          306 FSSEKSVRQII  316 (405)
Q Consensus       306 f~~~~~ve~i~  316 (405)
                      |.+++..|++.
T Consensus       230 ~~s~d~~eg~~  240 (243)
T 2q35_A          230 FNQPEIASRIQ  240 (243)
T ss_dssp             HSSTTHHHHHH
T ss_pred             hCCHHHHHHHh
Confidence            88875555543

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=100.00  E-value=3.3e-47  Score=358.12  Aligned_cols=208  Identities=18%  Similarity=0.167  Sum_probs=184.3

Q ss_pred             ccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCC
Q 015541           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (405)
Q Consensus        66 ~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (405)
                      +.|.++. +++|++||||||+ +|+||.+|+.+|.++++.+++| ++|+|||||.| ++||+|+|++++...     ...
T Consensus         5 ~~v~~~~-~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d-~vr~vvltg~g-~~F~aG~Dl~~~~~~-----~~~   75 (233)
T 3r6h_A            5 GPVTYTH-DDAIGVIRMDDGK-VNVLGPTMQQALNEAIDAADRD-NVGALVIAGNH-RVFSGGFDLKVLTSG-----EAK   75 (233)
T ss_dssp             CCEEEEE-ETTEEEEEECCSS-SCCCSHHHHHHHHHHHHHHHHH-TCSEEEEECCS-SEEECCSCHHHHC--------CH
T ss_pred             CceEEEE-ECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEECCC-CCccCCcChHHHhcc-----ChH
Confidence            4588887 6999999999996 6999999999999999999988 59999999997 899999999998651     122


Q ss_pred             chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHH
Q 015541          146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS  225 (405)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~  225 (405)
                      ....++...++++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.|++++|++++|.. 
T Consensus        76 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~g~~~l~~~~g~~-  154 (233)
T 3r6h_A           76 PAIDMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPS-  154 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTSSEEEECTTCCEECCGGGGTCCCCHHHHHHHHHHSCHH-
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCcchHHHHHHHHhCCEEEEeCCcEEECchhhhCCCCCccHHHHHHHHhCHH-
Confidence            3456777788899999999999999999999999999999999999999999999999999999999999999999987 


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHHh
Q 015541          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY  285 (405)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~  285 (405)
                      ++++|++||++++ |+||+++||||++||++++.+.+.++++.. +..|+.+++..++.+
T Consensus       155 ~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l-a~~~~~a~~~~K~~l  212 (233)
T 3r6h_A          155 AYQQAAGLAKTFF-GETALAAGFIDEISLPEVVLSRAEEAAREF-AGLNQQAHNATKLRA  212 (233)
T ss_dssp             HHHHHHHSCCEEC-HHHHHHHTSCSEECCGGGHHHHHHHHHHHH-HTSCHHHHHHHHHHT
T ss_pred             HHHHHHHcCCcCC-HHHHHHcCCCcEeeCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence            9999999999999 999999999999999999999999999874 444554555555444

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=100.00  E-value=1.5e-46  Score=359.50  Aligned_cols=237  Identities=14%  Similarity=0.164  Sum_probs=195.2

Q ss_pred             CCccEEEEEeeC-cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCC
Q 015541           64 AEEFVKGNVHPN-GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (405)
Q Consensus        64 ~~~~i~~~~~~~-~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (405)
                      .++.|.++. ++ +|++||||||++.|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++...    .
T Consensus        21 ~~~~i~~~~-~~~~Va~ItLnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~----~   94 (263)
T 2j5g_A           21 KYENLHFHR-DENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSG-DAWMAEIDFPSLGDV----T   94 (263)
T ss_dssp             SCTTEEEEE-CTTCEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TEEECEECSGGGCCT----T
T ss_pred             CCCeEEEEE-cCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CCcccCcCHHHHhcc----C
Confidence            356688887 57 9999999999999999999999999999999999999999999997 899999999987531    1


Q ss_pred             CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeC-ccccccccCCccHHHHHhcCC
Q 015541          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM-PENGIGLFPDVGFSYIAAKGP  221 (405)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~-PE~~iGl~P~~G~~~~L~r~~  221 (405)
                      .......++...+.++..|.++||||||+|||+|+ ||++|+++||+|||+++++|++ ||+++|++|++|++++|+|++
T Consensus        95 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~L~r~v  173 (263)
T 2j5g_A           95 NPREWDKTYWEGKKVLQNLLDIEVPVISAVNGAAL-LHSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHILWPLAL  173 (263)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEC-SCGGGGGGCSEEEEETTCEECCCHHHHHTCCCCSSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCcch-HHHHHHHhCCEEEEcCCCEEecCcccccccCCCccHHHHHHHHc
Confidence            11112335555667888999999999999999999 5999999999999999999999 999999999999999999999


Q ss_pred             ChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHH---HHHHHHhcCCCCCcchhhhh
Q 015541          222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDI---VALLAKYSSDPEGEAPLKLL  298 (405)
Q Consensus       222 G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i---~~~l~~~~~~~~~~~~l~~~  298 (405)
                      |.. ++++|++||++++ |+||+++||||++||++++.+.+.++++.... .|..++   |++++....     ..+   
T Consensus       174 G~~-~A~~llltG~~~~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~-~~~~a~~~~K~~l~~~~~-----~~l---  242 (263)
T 2j5g_A          174 GLY-RGRYFLFTQEKLT-AQQAYELNVVHEVLPQSKLMERAWEIARTLAK-QPTLNLRYTRVALTQRLK-----RLV---  242 (263)
T ss_dssp             HHH-HHHHHHHTTCCEE-HHHHHHTTSCSEEECGGGHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHHH-----HHH---
T ss_pred             CHH-HHHHHHHcCCCCC-HHHHHHCCCccEecChHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhhhh-----ccH---
Confidence            987 9999999999999 99999999999999999999999999987544 444344   444433210     111   


Q ss_pred             HHHHHHHcCCcccHHHHHHHHHhc
Q 015541          299 LPQITSCFSSEKSVRQIIEELKKH  322 (405)
Q Consensus       299 ~~~i~~~f~~~~~ve~i~~~Le~~  322 (405)
                          .+.+......|++-++++++
T Consensus       243 ----~~~l~~e~~~eg~~af~~~~  262 (263)
T 2j5g_A          243 ----NEGIGYGLALEGITATDLRN  262 (263)
T ss_dssp             ----HHHHHHHHHHHHHHHHHTTC
T ss_pred             ----HHHHHHHHHHhhHHHHHhcc
Confidence                12222223567888887765

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=100.00  E-value=2.8e-46  Score=360.72  Aligned_cols=245  Identities=18%  Similarity=0.181  Sum_probs=189.9

Q ss_pred             CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCC
Q 015541           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (405)
Q Consensus        64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (405)
                      .++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.........
T Consensus        18 ~~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G-~~F~aG~Dl~~~~~~~~~~~~   95 (279)
T 3t3w_A           18 TEMYIDYDV-SDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANG-KHFSAGHDLRGGGPVPDKLTL   95 (279)
T ss_dssp             -CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECS-SCSBCCBCCC--------CCH
T ss_pred             cCCeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CceeeccChHhhhhcccccch
Confidence            467799988 699999999999999999999999999999999999999999999998 899999999988652211000


Q ss_pred             CCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (405)
Q Consensus       144 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~  223 (405)
                      ...........+.++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+ |+.|+..+ +|++|.
T Consensus        96 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl-~~~~~~~~-~~~vG~  173 (279)
T 3t3w_A           96 EFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDI-GGVEYHGH-TWELGP  173 (279)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHCSSCEEEEECSEEEGGGHHHHTTSSEEEEETTCEEECCGGGGTC-SSCSSCCH-HHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeEhHHHHHHHHhCCEEEecCCCEEeCcHHhcCC-CCchHHHH-HhhcCH
Confidence            0011112234456778999999999999999999999999999999999999999999999999 44444443 899999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHH---HHHHHHHhcCCCCCcchhhhhHH
Q 015541          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQD---IVALLAKYSSDPEGEAPLKLLLP  300 (405)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~---i~~~l~~~~~~~~~~~~l~~~~~  300 (405)
                      . ++++|++||++++ |+||+++||||++||++++.+.+.+++..... .|..+   .|+.++...       .......
T Consensus       174 ~-~A~~llltG~~i~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~-~~~~a~~~~K~~l~~~~-------~~~~~~~  243 (279)
T 3t3w_A          174 R-KAKEILFTGRAMT-AEEVAQTGMVNRVVPRDRLDAETRALAGEIAK-MPPFALRQAKRAVNQTL-------DVQGFYA  243 (279)
T ss_dssp             H-HHHHHHHHCCCEE-HHHHHHHTSCSEEECGGGHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHH-------HHTTHHH
T ss_pred             H-HHHHHHHcCCccC-HHHHHHCCCCcEeeChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhh-------hcccHHH
Confidence            7 9999999999999 99999999999999999999999999987544 44434   444444321       1222344


Q ss_pred             HHHHHcCCcccHHHHHHHHHhcc
Q 015541          301 QITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       301 ~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      .+..+|... .+.+-.++.++..
T Consensus       244 ~~~~~~~~~-~~~~~~~~~~~~~  265 (279)
T 3t3w_A          244 AIQSVFDIH-QTGHGNAMSVSGW  265 (279)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHTSS
T ss_pred             HHHHHhhHH-HHHHHHHHHhcCC
Confidence            566777665 5555555555444

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=100.00  E-value=3.9e-46  Score=368.18  Aligned_cols=216  Identities=20%  Similarity=0.252  Sum_probs=179.4

Q ss_pred             CCCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCC
Q 015541           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (405)
Q Consensus        63 ~~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (405)
                      ..++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||+|.| ++||+|+|++++........
T Consensus        32 ~~~~~i~~e~-~~~Va~ItLnrP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G-~~FcaG~Dl~~~~~~~~~~~  109 (333)
T 3njd_A           32 DNLKTMTYEV-TDRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRG-EGFCAGFDLSAYAEGSSSAG  109 (333)
T ss_dssp             TSCSSEEEEE-ETTEEEEEECCGGGTTCBCTHHHHHHHHHHHHHHHCTTCCEEEEEEST-TSSBCCBC------------
T ss_pred             CCCCeEEEEE-ECCEEEEEeCCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CceecCcCHHHHhhcccccc
Confidence            4577899998 699999999999999999999999999999999999999999999998 89999999999865321100


Q ss_pred             CC-----------------------C--chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCee
Q 015541          143 NT-----------------------P--LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTL  197 (405)
Q Consensus       143 ~~-----------------------~--~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~  197 (405)
                      ..                       .  ....++...+.++..|.++||||||+|||+|+|||++|+++||||||+++++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~rias~~a~  189 (333)
T 3njd_A          110 GGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADAK  189 (333)
T ss_dssp             ---CCTTSTTCHHHHHHTTCSSSCCCHHHHHHHHHHHHHHHTHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEECTTCE
T ss_pred             cccccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeHHHHHHHHhCCEEEECCCCe
Confidence            00                       0  1123455666778899999999999999999999999999999999999999


Q ss_pred             eeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--
Q 015541          198 LAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--  275 (405)
Q Consensus       198 f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--  275 (405)
                      |++||+++|++|+.|   +|+|++|.. ++++|+|||+.|+ |+||+++||||++||.+++.+.+.+++.......|.  
T Consensus       190 f~~pe~~lG~~P~~g---~l~~~vG~~-~A~ellltG~~i~-A~eA~~~GLV~~vv~~~~l~~~a~~lA~~ia~~~~~al  264 (333)
T 3njd_A          190 IGYPPMRVWGVPAAG---LWAHRLGDQ-RAKRLLFTGDCIT-GAQAAEWGLAVEAPDPADLDARTERLVERIAAMPVNQL  264 (333)
T ss_dssp             EECGGGGTTCCCTTC---CHHHHHCHH-HHHHHHTTCCEEE-HHHHHHTTSSSBCCCGGGHHHHHHHHHHHHHTSCHHHH
T ss_pred             eechhhceeccCHHH---HHHHHHHHH-HHHHHHhcCCCCC-HHHHHHCCCccEecChHHHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999987   578999997 9999999999999 999999999999999999999999999885444443  


Q ss_pred             HHHHHHHHHh
Q 015541          276 QDIVALLAKY  285 (405)
Q Consensus       276 ~~i~~~l~~~  285 (405)
                      ...|.+++..
T Consensus       265 ~~~K~~l~~~  274 (333)
T 3njd_A          265 IMAKLACNTA  274 (333)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3455555543

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=100.00  E-value=1.6e-45  Score=346.31  Aligned_cols=204  Identities=20%  Similarity=0.190  Sum_probs=180.4

Q ss_pred             ccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCC
Q 015541           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (405)
Q Consensus        66 ~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (405)
                      +.|.++. +++|++||||||+ +|+||.+|+.+|.++++.++.|+  ++|||||.| ++||+|+|++++...      ..
T Consensus         6 ~~v~~~~-~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~--~~vvltg~g-~~F~aG~Dl~~~~~~------~~   74 (232)
T 3ot6_A            6 DLVSYHL-DDGVATLTLNNGK-VNAISPDVIIAFNAALDQAEKDR--AIVIVTGQP-GILSGGYDLKVMTSS------AE   74 (232)
T ss_dssp             HHEEEEE-ETTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHHTT--CEEEEECBT-EEEECCBCHHHHHHC------HH
T ss_pred             cceEEEE-ECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcCC--CEEEEECCC-CCccCCcCHHHHhhC------hH
Confidence            4588887 6999999999996 69999999999999999999874  899999997 899999999998752      11


Q ss_pred             chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCC-eeeeCccccccccCCccHHHHHhcCCChH
Q 015541          146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~-a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                      ....++...+.++..|.++|||+||+|||+|+|||++|+++||||||+++ ++|++||+++|++|+.|+++++++.+|..
T Consensus        75 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~g~~~l~~~ig~~  154 (232)
T 3ot6_A           75 AAINLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKS  154 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCEEEECCEEEETHHHHHHTTSSEEEEECSSCCEECCTTTTTCCCCHHHHHHHHHHSCHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCchhHHHHHHHHhCHH
Confidence            23456777788999999999999999999999999999999999999998 89999999999998888899999999987


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLA  283 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~  283 (405)
                       ++++|++||++++ |+||+++||||++||++++.+.+.++++.. +..|+.+++..++
T Consensus       155 -~a~~l~ltg~~i~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~~l-a~~~~~a~~~~K~  210 (232)
T 3ot6_A          155 -AFNRSVINAEMFD-PEGAMAAGFLDKVVSVEELQGAALAVAAQL-KKINMNAHKKTKL  210 (232)
T ss_dssp             -HHHHHHTSCCEEC-HHHHHHHTSCSEEECTTTHHHHHHHHHHHH-TTSCHHHHHHHHH
T ss_pred             -HHHHHHHcCCccC-HHHHHHCCCCCEecCHHHHHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence             9999999999999 999999999999999999999999999884 4445444443333

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=100.00  E-value=1.2e-45  Score=352.18  Aligned_cols=208  Identities=16%  Similarity=0.177  Sum_probs=182.1

Q ss_pred             ccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCC
Q 015541           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (405)
Q Consensus        66 ~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (405)
                      +.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..     ....
T Consensus        16 ~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~-----~~~~   88 (257)
T 1szo_A           16 ENIRLER-DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTG-PSFCNEIDFTSFNL-----GTPH   88 (257)
T ss_dssp             TTEEEEE-ETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TBSBCEECGGGSCC-----SSHH
T ss_pred             ceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCC-CccccCcCchhhhc-----CCHH
Confidence            4688887 689999999999999999999999999999999999999999999997 89999999998642     1111


Q ss_pred             chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeC-ccccccccCCccHHHHHhcCCChH
Q 015541          146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM-PENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~-PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                      ....++...++++..|.++||||||+|||+|+ ||++|+++||||||+++++|++ ||+++|++|++|++++|+|++|..
T Consensus        89 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~l~r~vG~~  167 (257)
T 1szo_A           89 DWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSN  167 (257)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcEEEEECCchH-HHHHHHHHCCEEEEeCCCEEecCcccccccCCCccHHHHHHHHcCHH
Confidence            12335555667888999999999999999999 5999999999999999999999 999999999999999999999997


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAK  284 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~  284 (405)
                       ++++|++||++++ |+||+++||||++||++++.+.+.++++... ..|+.++...++.
T Consensus       168 -~A~~llltG~~~~-A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la-~~~~~a~~~~K~~  224 (257)
T 1szo_A          168 -RGRYFLLTGQELD-ARTALDYGAVNEVLSEQELLPRAWELARGIA-EKPLLARRYARKV  224 (257)
T ss_dssp             -HHHHHHHTTCEEE-HHHHHHHTSCSEEECHHHHHHHHHHHHHHHH-TSCHHHHHHHHHH
T ss_pred             -HHHHHHHcCCCCC-HHHHHHCCCceEEeChHHHHHHHHHHHHHHH-hCCHHHHHHHHHH
Confidence             9999999999999 9999999999999999999999999988744 4444444444433

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=100.00  E-value=7.8e-46  Score=375.14  Aligned_cols=251  Identities=19%  Similarity=0.208  Sum_probs=196.9

Q ss_pred             ccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeC--------CCCCcccCCChhhHHHh
Q 015541           66 EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS--------GPRAFCAGMDIKGVVAE  137 (405)
Q Consensus        66 ~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~--------g~~~FcaG~Dl~~~~~~  137 (405)
                      +.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.        |+++||+|+||+++...
T Consensus       167 ~~v~~e~-~~gVa~ItLNRP~k~NALs~~m~~eL~~al~~~~~D~~VRvVVLtG~~~~~p~~aG~~~FcAG~DL~~~~~~  245 (440)
T 2np9_A          167 EAVHLER-RDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQG  245 (440)
T ss_dssp             SSEEEEE-ETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHHHTT
T ss_pred             ceEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCccccccCCCccccCCcchhhhhcc
Confidence            4688887 68999999999999999999999999999999999999999999995        55899999999987641


Q ss_pred             hhhCCCCCc-hHHHHHHHHHHHHHH------------HhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCcccc
Q 015541          138 IQKDRNTPL-VPKVFTAEYSLICKI------------SEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG  204 (405)
Q Consensus       138 ~~~~~~~~~-~~~~~~~~~~l~~~i------------~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~  204 (405)
                      .  ...... ....+.....++..+            .++||||||+|||+|+|||++|+++||||||+++++|++||++
T Consensus       246 ~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCDirIAae~A~Fglpev~  323 (440)
T 2np9_A          246 G--ISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAK  323 (440)
T ss_dssp             C--CCTTTTHHHHHHTHHHHHHHCEECCSCSTTTTTCCEECCCEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCTT
T ss_pred             C--cchhhhhhHHHHHHHHHHHHHHHhhcccchhhhhhcCCCCEEEEECCcccccchHHHhhCCEEEEcCCCEEECchhc
Confidence            1  011111 111111122333333            4799999999999999999999999999999999999999999


Q ss_pred             ccccCCccHHHHHhcCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 015541          205 IGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAK  284 (405)
Q Consensus       205 iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~  284 (405)
                      +|++|++| +++|+|++|.+ ++++|+|||++|+ |+||+++||||+|||++++.+.+.+++.. ++..+...+|.+++.
T Consensus       324 lGl~P~~g-~~~L~rlvG~~-~A~ellLtG~~i~-A~EA~~~GLV~~Vvp~~eL~~~a~~~A~~-la~~Av~~~K~~l~~  399 (440)
T 2np9_A          324 EGIIPGAA-NLRLGRFAGPR-VSRQVILEGRRIW-AKEPEARLLVDEVVEPDELDAAIERSLTR-LDGDAVLANRRMLNL  399 (440)
T ss_dssp             TCCCCTTH-HHHHHHHHHHH-HHHHHHHHCCCEE-TTSGGGGGTCSEEECHHHHHHHHHHHHHT-TCSHHHHHHHHHHHH
T ss_pred             cCcCcchH-HHHHHHHhhHH-HHHHHHHcCCCCC-HHHHHHCCCCcEecChHHHHHHHHHHHHH-hCHHHHHHHHHHHHh
Confidence            99999987 68999999997 9999999999999 99999999999999999999888888876 444444566777765


Q ss_pred             hcCCCCC-cchhhhhHHHHHHHcCCcccHHHHHHHHHhcc
Q 015541          285 YSSDPEG-EAPLKLLLPQITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       285 ~~~~~~~-~~~l~~~~~~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ....... ...+..+...+..+|.+++..|++.+|++|+.
T Consensus       400 ~~~~~~~~~~~l~~e~~~~~~~~~s~D~~Egv~AFleKR~  439 (440)
T 2np9_A          400 ADESPDGFRAYMAEFALMQALRLYGHDVIDKVGRFGGRPP  439 (440)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTCC----
T ss_pred             hhcchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhCCC
Confidence            4221000 01122333456677888888999999998764

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=100.00  E-value=6.8e-43  Score=375.52  Aligned_cols=238  Identities=24%  Similarity=0.258  Sum_probs=195.1

Q ss_pred             EEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchH
Q 015541           69 KGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVP  148 (405)
Q Consensus        69 ~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~  148 (405)
                      .+.+.+|+|++||||||+ .|+||.+|+.+|.+++++++.|++||+|||||+| ++||+|+||+++...    ....   
T Consensus        23 ~~~~~~~~Va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aGaDl~~~~~~----~~~~---   93 (742)
T 3zwc_A           23 EYLRLPHSLAMIRLCNPP-VNAVSPTVIREVRNGLQKAGSDHTVKAIVICGAN-GNFCAGADIHGFSAF----TPGL---   93 (742)
T ss_dssp             EEEECSTTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEEST-TCSBCCBCSSSCCSS----CSCS---
T ss_pred             eEEEeeCCEEEEEeCCCc-ccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCC-CccccCcChHhhhcc----ChhH---
Confidence            334447999999999998 6999999999999999999999999999999997 899999999987541    1111   


Q ss_pred             HHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHH
Q 015541          149 KVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGA  228 (405)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~  228 (405)
                          ....++..|.+++|||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.. .++
T Consensus        94 ----~~~~~~~~i~~~~kPvIAai~G~a~GGG~elalacD~ria~~~a~fg~pev~lGl~Pg~ggt~rL~rlvG~~-~A~  168 (742)
T 3zwc_A           94 ----ALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVP-VAL  168 (742)
T ss_dssp             ----HHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHHCHH-HHH
T ss_pred             ----HHHHHHHHHHhCCCCEEEEECccchHHHHHHHHhcCEEEEcCCCEEECcccCcccCCCccHHHHHHHhhhHH-HHH
Confidence                124567789999999999999999999999999999999999999999999999999999999999999997 999


Q ss_pred             HHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH---------------------------------
Q 015541          229 YLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH---------------------------------  275 (405)
Q Consensus       229 ~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~---------------------------------  275 (405)
                      +|+|||++++ |++|+++||||+|+|.+. .+.+.++++......+.                                 
T Consensus       169 ~l~ltG~~i~-a~eA~~~GLv~~vv~~d~-~~~A~~~A~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~  246 (742)
T 3zwc_A          169 DLITSGKYLS-ADEALRLGILDAVVKSDP-VEEAIKFAQKIIDKPIEPRRIFNKPVPSLPNMDSVFAEAIAKVRKQYPGV  246 (742)
T ss_dssp             HHHHHCCCEE-HHHHHHHTSCSEEESSCH-HHHHHHHHHHHTTSCSGGGCGGGSCCCCCTTHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHcCCchh-HHHHHHcCCccEecCchh-hHHHHHHHHHHhcCCchhhhhhcccccccchhhhhHHHHHHHHhhhccch
Confidence            9999999999 999999999999999765 45667777665443220                                 


Q ss_pred             ---HHHHHHHHHhcCCCCCcchhhhhHHHHHHHcCCcccHHHHHHHHHhcc
Q 015541          276 ---QDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       276 ---~~i~~~l~~~~~~~~~~~~l~~~~~~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                         ..+.+.++.-.. ...+..+..+.+.+.+++.++++.+.+-.|+.++.
T Consensus       247 ~A~~~~~~~v~~~~~-~~~~~gl~~E~~~F~~l~~s~~~k~~~~aFf~~r~  296 (742)
T 3zwc_A          247 LAPETCVRSIQASVK-HPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKS  296 (742)
T ss_dssp             HHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence               112222222111 11134466677889999999988888888886653

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=100.00  E-value=1e-42  Score=374.83  Aligned_cols=253  Identities=17%  Similarity=0.233  Sum_probs=208.2

Q ss_pred             CccEEEEEeeCcEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~-~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (405)
                      ...+.++..+++|++||||||+ ++|+||.+|+.+|.++++.++.|+++|+||||| |+++||+|+||+++....  ...
T Consensus         5 ~~~i~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~--~~~   81 (715)
T 1wdk_A            5 GKAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEFVENF--KLP   81 (715)
T ss_dssp             CSSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEE-SSSSSBBCCCHHHHHHHT--TSC
T ss_pred             CCeEEEEEeeCCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCeEeCCcCHHHHhhcc--cCC
Confidence            3457787446899999999998 899999999999999999999999999999999 745999999999986521  111


Q ss_pred             CCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (405)
Q Consensus       144 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~  223 (405)
                      ......+....+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~ggt~~L~r~vG~  161 (715)
T 1wdk_A           82 DAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGV  161 (715)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEeCCCEEeChhhccCCCCCccHHHHHHHHhCH
Confidence            11223345566788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCC--C----------cH----------------
Q 015541          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSE--D----------PH----------------  275 (405)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~--~----------~~----------------  275 (405)
                      . .+++|++||++++ |+||+++||||++||++++.+.+.+++......  .          |.                
T Consensus       162 ~-~A~~l~ltG~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~  239 (715)
T 1wdk_A          162 D-NAVEWIASGKENR-AEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKG  239 (715)
T ss_dssp             H-HHHHHHHHCCCEE-HHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHHHHHGGGGSCCSCCHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHcCCCCC-HHHHHHCCCceEEeChHHHHHHHHHHHHHHhhccCCcchhcccccCccccCchhHHHHHHHHHH
Confidence            7 9999999999999 999999999999999999999999988764333  1          11                


Q ss_pred             -------------HHHHHHHHHhcCCCCCcchhhhhHHHHHHHcCCcccHHHHHHHHHhcc
Q 015541          276 -------------QDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       276 -------------~~i~~~l~~~~~~~~~~~~l~~~~~~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                                   ..++++++.-. .......++.+...+.+++.+++..+.+-.|++++.
T Consensus       240 ~~~~~~~g~~~A~~~~k~~v~~~~-~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~  299 (715)
T 1wdk_A          240 FVAGQAGPNYPAPVEAIKTIQKAA-NFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQE  299 (715)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred             HHHHhcccCCchHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcchhHHHHHHHHHhhhh
Confidence                         01222333321 112233455666778899999988999988988765

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=100.00  E-value=3.4e-43  Score=378.95  Aligned_cols=253  Identities=20%  Similarity=0.213  Sum_probs=200.7

Q ss_pred             CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCC
Q 015541           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (405)
Q Consensus        64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (405)
                      .++.+.++..+++|++|||||| ++|+||.+|+.+|.++++.++.|+++|+||||| |+++||+|+||+++.....  ..
T Consensus         5 ~~~~i~~~~~~~~va~itlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~--~~   80 (725)
T 2wtb_A            5 TKGKTVMEVGGDGVAVITLINP-PVNSLSFDVLYNLKSNYEEALSRNDVKAIVITG-AKGRFSGGFDISGFGEMQK--GN   80 (725)
T ss_dssp             --CEEEEEECTTSEEEEEEECT-TTTCCCHHHHHHHHHHHHHHTTCTTCCEEEEEE-SSSCCBCSSCC------------
T ss_pred             cCCeEEEEEeeCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCcccCCcCHHHHhcccc--hh
Confidence            3456888744689999999999 789999999999999999999999999999999 7559999999998854210  00


Q ss_pred             CCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (405)
Q Consensus       144 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~  223 (405)
                      ......+....+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~Ggt~~L~rlvG~  160 (725)
T 2wtb_A           81 VKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGL  160 (725)
T ss_dssp             --CCSSSHHHHHCCCCCCCTSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCCSSHHHHHHHHHCH
T ss_pred             hhhHHHHHHHHHHHHHHHHhCcCcEEEEECCccCcccHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhcCH
Confidence            00011123445566778899999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCC-cH---------------------------
Q 015541          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSED-PH---------------------------  275 (405)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~-~~---------------------------  275 (405)
                      . .+++|++||++++ |+||+++||||++||++++.+.+.+++....... |.                           
T Consensus       161 ~-~A~~l~ltG~~~~-a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~  238 (725)
T 2wtb_A          161 T-KALEMILTSKPVK-AEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLGEAREILTFAKAQT  238 (725)
T ss_dssp             H-HHHHHHHHCCCEE-HHHHHHHTSCSEECCTTTHHHHHHHHHHHHHTTSSCCCCGGGCCTTSCCHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHcCCCCC-HHHHHHCCccceEcChhHHHHHHHHHHHHHHhcCCChhhhhhhccccCccchHHHHHHHHHHHH
Confidence            7 9999999999999 9999999999999999999999998887643321 11                           


Q ss_pred             ----------HHHHHHHHHhcCCCCCcchhhhhHHHHHHHcCCcccHHHHHHHHHhcc
Q 015541          276 ----------QDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       276 ----------~~i~~~l~~~~~~~~~~~~l~~~~~~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                                ..++++++.-... .....++.+...+.+++.+++..+.+-.+++++.
T Consensus       239 ~~~~~g~pA~~~~k~~~~~~~~~-~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~  295 (725)
T 2wtb_A          239 LKRAPNMKHPLMCLDAIEVGIVS-GPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRG  295 (725)
T ss_dssp             HHHCTTCCHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHG
T ss_pred             HHhccCCcHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHhcchhHHHHHHHhhhhhh
Confidence                      1344454432221 1133455666778899999888888888888764

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=100.00  E-value=2.5e-42  Score=352.97  Aligned_cols=202  Identities=14%  Similarity=0.172  Sum_probs=179.9

Q ss_pred             CCccEEEEEeeCcEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHhcC-CCceEEEEee-CCCCCcccCCCh
Q 015541           64 AEEFVKGNVHPNGVAVITLDRPK----------ALNAMNLDMDIKYKSFLDEWESD-PRVKCVLIEG-SGPRAFCAGMDI  131 (405)
Q Consensus        64 ~~~~i~~~~~~~~v~~ItLnrp~----------~~Nal~~~m~~~L~~~l~~~~~d-~~v~~vvl~g-~g~~~FcaG~Dl  131 (405)
                      .++.|.++. +++|++||||||+          ++|+||.+|+.+|.++++.++.| ++||+||||| .| ++||+|+|+
T Consensus        19 ~~~~v~ve~-~ggVA~ITLNRPed~~l~~g~~~k~NALs~~ml~eL~~AL~~~~~D~~~VRaVVLTGa~G-~~FcAGaDL   96 (556)
T 2w3p_A           19 QYKHWKLSF-NGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKD-RVFCSGANI   96 (556)
T ss_dssp             GCSSEEEEE-ETTEEEEEECCCTTCCSSSSCCCCTTEECHHHHHHHHHHHHHHHHHCTTCCEEEEEESSS-SEEECEECH
T ss_pred             cCceEEEEe-eCCEEEEEEecccccccccccCCCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCC-CcccCCcCH
Confidence            356688887 6899999999998          89999999999999999999999 9999999999 65 899999999


Q ss_pred             hhHHHhhhhCCCCCchHHHHHHHHHHHHHH----HhCCCcEEEEECCccccccceecccccEEEEeCC--eeeeCcccc-
Q 015541          132 KGVVAEIQKDRNTPLVPKVFTAEYSLICKI----SEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK--TLLAMPENG-  204 (405)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i----~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~--a~f~~PE~~-  204 (405)
                      +++....     ......+....+.++..|    .++||||||+|||+|+|||++|+++||||||+++  ++|++||++ 
T Consensus        97 ~el~~~~-----~~~~~~~~~~~~~l~~~L~~a~~~~pKPVIAAVnG~AlGGGleLALACD~rIAse~~~A~FglPEv~~  171 (556)
T 2w3p_A           97 FMLGLST-----HAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPL  171 (556)
T ss_dssp             HHHHHSC-----HHHHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECSEEETHHHHHHHHSSEEEEECSSSCEEECCHHHH
T ss_pred             HHHhhcc-----cHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCeechhhHHHHHhCCEEEEcCCCCcEEecccccc
Confidence            9986521     111233455566778888    9999999999999999999999999999999999  999999999 


Q ss_pred             ccccCCccHHHHHh--cCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCc
Q 015541          205 IGLFPDVGFSYIAA--KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDP  274 (405)
Q Consensus       205 iGl~P~~G~~~~L~--r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~  274 (405)
                      +|++|++|++++|+  |++|.. ++++|++||+.++ |+||+++||||++||++++.+.+.++++......|
T Consensus       172 LGL~Pg~Ggt~rLp~~RlVG~~-rA~eLlLTGr~is-A~EAl~lGLVdeVVp~~eL~~~A~~lA~~LA~~~p  241 (556)
T 2w3p_A          172 LGVLPGTGGLTRVTDKRKVRHD-RADIFCTVVEGVR-GERAKAWRLVDEVVKPNQFDQAIQARALELAAQSD  241 (556)
T ss_dssp             HSSCCTTTHHHHHHHTSCCCHH-HHHHHTTCSSCEE-HHHHHHTTSCSEEECHHHHHHHHHHHHHHHHTTCC
T ss_pred             cCCCCCccHHHHHHhhccCCHH-HHHHHHHcCCCCC-HHHHHHCCCceEEeChhHHHHHHHHHHHHHHcCCh
Confidence            99999999999999  999987 9999999999999 99999999999999999999999998887544333

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.86  E-value=5.2e-23  Score=217.14  Aligned_cols=170  Identities=15%  Similarity=0.080  Sum_probs=142.5

Q ss_pred             eCcEEEEEEcCCCCCCC--CCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHH
Q 015541           74 PNGVAVITLDRPKALNA--MNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVF  151 (405)
Q Consensus        74 ~~~v~~ItLnrp~~~Na--l~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~  151 (405)
                      +++|++|+||+|...|+  ++..|.++|.++|+.++.|+++|+|||++.+     .|+|+...                 
T Consensus       300 ~~~VavI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~s-----pGG~~~~~-----------------  357 (593)
T 3bf0_A          300 GDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNS-----PGGSVTAS-----------------  357 (593)
T ss_dssp             SCEEEEEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEEE-----EEECHHHH-----------------
T ss_pred             CCCEEEEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEecC-----CCCCHHHH-----------------
Confidence            57899999999998898  7889999999999999999999999999985     37887642                 


Q ss_pred             HHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccc------------cccccCCc--------
Q 015541          152 TAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPEN------------GIGLFPDV--------  211 (405)
Q Consensus       152 ~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~------------~iGl~P~~--------  211 (405)
                      ...++.+..+..++|||||+|+|.|.|||+.|+++||+|+|++++.|+.+++            ++|+.|+.        
T Consensus       358 ~~i~~~i~~l~~~~kPVia~v~g~AasgG~~iA~aaD~iva~p~a~~Gsigv~~~~~~~~~~~~klGi~~~~~~~g~~k~  437 (593)
T 3bf0_A          358 EVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLAD  437 (593)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEEEEEETHHHHTTTTCSEEEECTTCEEECCCEEEEEEECHHHHHHTTCEEECCBSCGGGC
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCChHHHHHHHHHhCCEEEECCCCEeecceeEEecCchHHHHHhcCceeeeeecccccc
Confidence            1234556678889999999999999999999999999999999999999985            58987654        


Q ss_pred             -----cHH---------------HHHhcCCChHHH-----HHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHH
Q 015541          212 -----GFS---------------YIAAKGPGGGSV-----GAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALL  266 (405)
Q Consensus       212 -----G~~---------------~~L~r~~G~~~~-----a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~  266 (405)
                           +.+               ..+.+.++.+ +     +.+++++|+.++ |+||+++||||++++.+++.+.+.+++
T Consensus       438 ~~~~~~~t~~~~~~l~~~l~~~~~~f~~~V~~~-Rg~~~~a~~~l~~G~~~t-a~eA~~~GLVD~v~~~~~~~~~a~~~a  515 (593)
T 3bf0_A          438 VSITRALPPEAQLMMQLSIENGYKRFITLVADA-RHSTPEQIDKIAQGHVWT-GQDAKANGLVDSLGDFDDAVAKAAELA  515 (593)
T ss_dssp             CCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCHHHHHTTCTTCEEE-HHHHHHHTSCSEECCHHHHHHHHHHHS
T ss_pred             cCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhcCCCcC-HHHHHHCCCCcCccCHHHHHHHHHHHc
Confidence                 222               4556666654 5     789999999999 999999999999998777766666654


Q ss_pred             H
Q 015541          267 A  267 (405)
Q Consensus       267 ~  267 (405)
                      .
T Consensus       516 ~  516 (593)
T 3bf0_A          516 K  516 (593)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=99.81  E-value=7.5e-20  Score=172.28  Aligned_cols=168  Identities=15%  Similarity=0.050  Sum_probs=128.1

Q ss_pred             eCcEEEEEEcCCCCCCCCCHH-------HHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCc
Q 015541           74 PNGVAVITLDRPKALNAMNLD-------MDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPL  146 (405)
Q Consensus        74 ~~~v~~ItLnrp~~~Nal~~~-------m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~  146 (405)
                      +++|++|+++.+=..+.-...       ..++|.++|+.++.|++||+|||++.     |.|+|+....           
T Consensus         2 ~~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~-----s~Gg~~~~~~-----------   65 (240)
T 3rst_A            2 SSKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVN-----SPGGGVYESA-----------   65 (240)
T ss_dssp             CCEEEEEEEESCBCCC---------CCCCHHHHHHHHHHHHHCTTEEEEEEEEE-----ECCBCHHHHH-----------
T ss_pred             CCeEEEEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHhCCCcEEEEEEec-----CCCCCHHHHH-----------
Confidence            467999999876432211111       35789999999999999999999987     4688886432           


Q ss_pred             hHHHHHHHHHHHHHHHh-CCCcEEEEECCccccccceecccccEEEEeCCeeeeCc---------------------ccc
Q 015541          147 VPKVFTAEYSLICKISE-YKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP---------------------ENG  204 (405)
Q Consensus       147 ~~~~~~~~~~l~~~i~~-~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~P---------------------E~~  204 (405)
                            ..++.+..+.. ++|||||+|+|.|.|||+.|+++||+|+|++++.|+.+                     +.+
T Consensus        66 ------~i~~~l~~~~~~~~kPVia~v~g~a~~gG~~lA~a~D~i~a~~~a~~g~~Gv~~~~~~~~~~l~k~Gi~~~~~~  139 (240)
T 3rst_A           66 ------EIHKKLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYSKLADKLGISFETIK  139 (240)
T ss_dssp             ------HHHHHHHHHHHHHCCCEEEEEEEEEETHHHHHHTTSSEEEECTTCEEECCCCEEEEEECHHHHHHHTCEEEEEE
T ss_pred             ------HHHHHHHHHHHhCCCeEEEEECCeehHhHHHHHHhCCeeEECCCCeEeccceeeEecCHHHHHHHcCCeEEEEe
Confidence                  23455566777 89999999999999999999999999999999999999                     667


Q ss_pred             ccccCCccHH--------------------------HHHhcCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCCh
Q 015541          205 IGLFPDVGFS--------------------------YIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNL  258 (405)
Q Consensus       205 iGl~P~~G~~--------------------------~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l  258 (405)
                      .|-+++.+..                          ..-.|.+...  ....+++|+.++ |++|+++||||++.+.+++
T Consensus       140 ~G~~k~~~~p~~~~s~~~~~~~~~~l~~~~~~f~~~Va~~R~l~~~--~~~~~~~g~~~~-a~~A~~~GLVD~i~~~~~~  216 (240)
T 3rst_A          140 SGAHADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMPKA--EVKKIADGRVYD-GRQAKKLNLVDELGFYDDT  216 (240)
T ss_dssp             SSTTTTTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHH--HHHHHCSSCEEE-HHHHHHTTSSSEECCHHHH
T ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH--HHHHHhcCCccc-HHHHHHcCCCcccCCHHHH
Confidence            7877877632                          2233545532  344478999999 9999999999999986666


Q ss_pred             HHHHHHHH
Q 015541          259 GSLKEALL  266 (405)
Q Consensus       259 ~~~~~~l~  266 (405)
                      .+.+.+++
T Consensus       217 ~~~~~~~~  224 (240)
T 3rst_A          217 ITAMKKDH  224 (240)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHh
Confidence            55555544

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.77  E-value=1.4e-18  Score=161.98  Aligned_cols=149  Identities=15%  Similarity=0.167  Sum_probs=125.1

Q ss_pred             eCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHH
Q 015541           74 PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTA  153 (405)
Q Consensus        74 ~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~  153 (405)
                      .+.|.+|+++     |+++..|.+.|.++|+.++++ ++++|+|+..     |.|||+....                  
T Consensus         7 ~~~V~vI~i~-----g~I~~~~~~~l~~~l~~a~~~-~~~~Ivl~in-----spGG~v~~~~------------------   57 (230)
T 3viv_A            7 KNIVYVAQIK-----GQITSYTYDQFDRYITIAEQD-NAEAIIIELD-----TPGGRADAMM------------------   57 (230)
T ss_dssp             CCEEEEEEEE-----SCBCHHHHHHHHHHHHHHHHT-TCSEEEEEEE-----BSCEEHHHHH------------------
T ss_pred             CCeEEEEEEe-----CEECHHHHHHHHHHHHHHhcC-CCCEEEEEEe-----CCCcCHHHHH------------------
Confidence            4679999999     689999999999999999874 6999999976     6688875332                  


Q ss_pred             HHHHHHHHHhCCCcEEEEE---CCccccccceecccccEEEEeCCeeeeCccccccccCCccHH---------------H
Q 015541          154 EYSLICKISEYKKPYISLM---DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFS---------------Y  215 (405)
Q Consensus       154 ~~~l~~~i~~~~kPvIa~v---~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~---------------~  215 (405)
                        .+...|..++||||++|   +|.|.|+|+.|+++||+|++.++++|+.++...++ |+.|.+               .
T Consensus        58 --~i~~~i~~~~~PVia~v~p~~G~AasaG~~ia~a~d~~~a~p~a~ig~~~p~~~~-~~~G~~~~~~~k~~~~~~~~~~  134 (230)
T 3viv_A           58 --NIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGY-SQNGSIIEAPPAITNYFIAYIK  134 (230)
T ss_dssp             --HHHHHHHTCSSCEEEEECSTTCEEETHHHHHHHTSSEEEECTTCEEECCCEEEEE-CTTSCEEECCHHHHHHHHHHHH
T ss_pred             --HHHHHHHhCCCCEEEEEecCCCEEhHHHHHHHHhcCceeECCCCEEEeccceecC-CCCCCchHHHHHHHHHHHHHHH
Confidence              34446778999999999   99999999999999999999999999999987533 555542               2


Q ss_pred             HHhcCCChH-HHHHHHHhcCCCCCcHHHHHHcCccceecCC
Q 015541          216 IAAKGPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPS  255 (405)
Q Consensus       216 ~L~r~~G~~-~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~  255 (405)
                      .+++..|.. ..+..++.+++.++ |+||+++||||+++++
T Consensus       135 ~la~~~Gr~~~~a~~~~~~~~~lt-A~EAle~GliD~V~~~  174 (230)
T 3viv_A          135 SLAQESGRNATIAEEFITKDLSLT-PEEALKYGVIEVVARD  174 (230)
T ss_dssp             HHHHHTTCCHHHHHHHHHTCCEEC-HHHHHHTTSCSEECSS
T ss_pred             HHHHHhCcCHHHHHHHHhcCCeec-HHHHHHcCCceEecCC
Confidence            467777851 27899999999999 9999999999999975

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.55  E-value=1e-14  Score=141.37  Aligned_cols=154  Identities=14%  Similarity=0.117  Sum_probs=122.3

Q ss_pred             cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHH
Q 015541           76 GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEY  155 (405)
Q Consensus        76 ~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  155 (405)
                      .|.++..+.--..|+++..+.+.+.++++.+.++ .+.+|+|+++|      |+|+++....             +....
T Consensus       119 ~V~v~a~d~~~~ggslg~~~~~Ki~r~~e~A~~~-~~PvI~l~~sG------Garlqeg~~~-------------l~~~~  178 (304)
T 2f9y_B          119 PVVAAAFEFAFMGGSMGSVVGARFVRAVEQALED-NCPLICFSASG------GARMQEALMS-------------LMQMA  178 (304)
T ss_dssp             ECBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHH-TCCEEEEEEES------SBCGGGTHHH-------------HHHHH
T ss_pred             EEEEEEEcCccccCCCCHHHHHHHHHHHHHHHhC-CCCEEEEECCC------CcCHHHHHHH-------------HHHHH
Confidence            3666777766678999999999999999999998 89999999986      7888654320             12223


Q ss_pred             HHHHHH---HhCCCcEEEEECCcccccc-ceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHH
Q 015541          156 SLICKI---SEYKKPYISLMDGVTMGFG-IGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLG  231 (405)
Q Consensus       156 ~l~~~i---~~~~kPvIa~v~G~a~GgG-~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~  231 (405)
                      .+...+   ...++|+|++|+|.|.||| +.+++.||++||.++++|++.           +...+.+.+|..       
T Consensus       179 ~i~~al~~~~~~~vP~IavV~G~~~GGg~a~~a~~~D~via~~~A~i~v~-----------Gp~~i~~~ig~~-------  240 (304)
T 2f9y_B          179 KTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFA-----------GPRVIEQTVREK-------  240 (304)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESS-----------CHHHHHHHHTSC-------
T ss_pred             HHHHHHHHHhcCCCCEEEEEECCCccHHHHHHHhcCCEEEEeCCcEEEee-----------cHHHHHHHhCcc-------
Confidence            344444   4559999999999999999 778999999999999999987           456677777742       


Q ss_pred             hcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHh
Q 015541          232 MTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAV  268 (405)
Q Consensus       232 ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~  268 (405)
                      ++++..+ |+++.++|+||++++.+++.+.+.+++..
T Consensus       241 l~~~~~~-Ae~~~~~Glvd~Vv~~~el~~~l~~ll~~  276 (304)
T 2f9y_B          241 LPPGFQR-SEFLIEKGAIDMIVRRPEMRLKLASILAK  276 (304)
T ss_dssp             CCTTTTB-HHHHGGGTCCSEECCHHHHHHHHHHHHHH
T ss_pred             CCcccCC-HHHHHhcCCccEEeCcHHHHHHHHHHHHH
Confidence            5788887 99999999999999887766666666554

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=99.55  E-value=1.7e-14  Score=133.69  Aligned_cols=141  Identities=12%  Similarity=0.077  Sum_probs=107.7

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEE
Q 015541           90 AMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYI  169 (405)
Q Consensus        90 al~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvI  169 (405)
                      .++..+.+++.+.|..++.|++++.|+|.=     .|-||++..-                    ..+...|..+++||+
T Consensus        53 ~I~~~~a~~i~~~L~~l~~~~~~k~I~l~I-----nSPGG~v~ag--------------------~~I~~~i~~~~~pV~  107 (218)
T 1y7o_A           53 PVEDNMANSVIAQLLFLDAQDSTKDIYLYV-----NTPGGSVSAG--------------------LAIVDTMNFIKADVQ  107 (218)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCTTSCEEEEE-----EECCBCHHHH--------------------HHHHHHHHHSSSCEE
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEE-----ECcCCCHHHH--------------------HHHHHHHHhcCCCEE
Confidence            378899999999999999887788888763     3445554321                    134446778899999


Q ss_pred             EEECCccccccceecccccE--EEEeCCeeeeCccccccccCCccHH------------------HHHhcCCChH-HHHH
Q 015541          170 SLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFS------------------YIAAKGPGGG-SVGA  228 (405)
Q Consensus       170 a~v~G~a~GgG~~lal~~D~--riate~a~f~~PE~~iGl~P~~G~~------------------~~L~r~~G~~-~~a~  228 (405)
                      ++++|.|.+||+.|+++||.  |+|.++++|++++.. |.+|+.|..                  ..+++..|.. ....
T Consensus       108 t~v~G~AaS~G~~Ia~a~d~g~r~a~p~a~igih~p~-~g~~~~G~~~di~~~~~~i~~~~~~~~~~~a~~~G~~~~~i~  186 (218)
T 1y7o_A          108 TIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPM-GGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVH  186 (218)
T ss_dssp             EEEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC---------------CHHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             EEEccEeHHHHHHHHHcCCcCcEEEcCCcEEEEeccc-ccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            99999999999999999999  999999999999987 444434432                  4566666652 2677


Q ss_pred             HHHhcCCCCCcHHHHHHcCccceecCCCC
Q 015541          229 YLGMTGKRISTPSDALFAGLGTDYVPSGN  257 (405)
Q Consensus       229 ~l~ltG~~i~~a~eA~~~GLv~~vv~~~~  257 (405)
                      .++.+|+.++ |+||+++||||+++++++
T Consensus       187 ~~~~~~~~~t-a~EA~e~GLVD~v~~~~~  214 (218)
T 1y7o_A          187 ADAERDNWMS-AQETLEYGFIDEIMANNS  214 (218)
T ss_dssp             HHHHSCCCBC-HHHHHHHTSCSEECCCC-
T ss_pred             HHHhCCCEEc-HHHHHHCCCCcEEcCcCC
Confidence            8889999999 999999999999998765

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=99.43  E-value=1.4e-12  Score=127.50  Aligned_cols=153  Identities=11%  Similarity=0.050  Sum_probs=108.6

Q ss_pred             eCcEEEEEEcCCC---------CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           74 PNGVAVITLDRPK---------ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        74 ~~~v~~ItLnrp~---------~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      +|.-..|.-|+|.         ..++++.+..+.+.++++.+++.. +-+|.|.-.+ +++. |.+..+.          
T Consensus       115 ~G~~V~Via~d~~~~~~~~~~~~~G~~~~~~~~Ka~r~~~~A~~~~-~PlI~lvdt~-Ga~~-g~~ae~~----------  181 (327)
T 2f9i_A          115 NGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFN-RPIFTFIDTK-GAYP-GKAAEER----------  181 (327)
T ss_dssp             TTEEEEEEEECCCSSHHHHHHTGGGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEES-CSCC-CHHHHHT----------
T ss_pred             CCEEEEEEEEcCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHhhcC-CCEEEEEeCC-CCCc-chhhhhh----------
Confidence            3444445555554         457899999999999999998865 4455554443 2332 2221100          


Q ss_pred             CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                          ........++..+..+++|+|++|+|.|.|||+.++++||++||+++++|++      +.|.++++.++.+..+..
T Consensus       182 ----g~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa~~~~~~D~via~~~A~~~v------~~peg~a~il~~~~~~a~  251 (327)
T 2f9i_A          182 ----GQSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSV------ISPEGAAALLWKDSNLAK  251 (327)
T ss_dssp             ----THHHHHHHHHHHHHTCSSCEEEEEEEEEBHHHHHTTCCCSEEEEETTCBCBS------SCHHHHHHHHSSCGGGHH
T ss_pred             ----hhHHHHHHHHHHHHhCCCCEEEEEECCcChHHHHHHHCCCEEEEcCCceEee------cCchHHHHHHHHHhcchH
Confidence                0123345667789999999999999999999999999999999999999986      345555555444443323


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCC
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPS  255 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~  255 (405)
                       .+.++    ..++ |++|+++|+||+|||.
T Consensus       252 -~A~e~----~~it-A~~a~~~GlVd~VV~e  276 (327)
T 2f9i_A          252 -IAAET----MKIT-AHDIKQLGIIDDVISE  276 (327)
T ss_dssp             -HHHHH----HTCB-HHHHHHTTSSSEEECC
T ss_pred             -HHHHH----cCCC-HHHHHHcCCceEEecC
Confidence             55555    6798 9999999999999983

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.41  E-value=1.8e-12  Score=127.22  Aligned_cols=140  Identities=12%  Similarity=0.000  Sum_probs=108.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCC
Q 015541           87 ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKK  166 (405)
Q Consensus        87 ~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~k  166 (405)
                      ..++++.+..+.+.++++.+++.. +-+|.|.-.+ +++. |.+..+              .........++..+..+++
T Consensus       151 ~~G~~~~~~~~Ka~r~~~~A~~~~-lPlI~lvDt~-Ga~~-g~~aE~--------------~g~~~~~a~~l~al~~~~v  213 (339)
T 2f9y_A          151 NFGMPAPEGYRKALRLMQMAERFK-MPIITFIDTP-GAYP-GVGAEE--------------RGQSEAIARNLREMSRLGV  213 (339)
T ss_dssp             GGGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEES-CSCC-SHHHHH--------------TTHHHHHHHHHHHHHTCSS
T ss_pred             hcCCCCHHHHHHHHHHHHHHhhcC-CCEEEEEeCC-CCcc-chHHHH--------------HHHHHHHHHHHHHHHhCCC
Confidence            347899999999999999988764 4455555443 2332 221110              0123344566778999999


Q ss_pred             cEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCCCCCcHHHHHHc
Q 015541          167 PYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFA  246 (405)
Q Consensus       167 PvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~  246 (405)
                      |+|++|+|.|.|||+.++++||++||.++++|++      +.|+++++.++.+..+.. .+.++    ..++ |++|+++
T Consensus       214 PvIavV~G~a~GGGa~~~~~~D~via~p~A~~~v------~~Peg~asil~~~~~~~~-~Aae~----~~it-A~~a~~~  281 (339)
T 2f9y_A          214 PVVCTVIGEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAP-LAAEA----MGII-RPRLKEL  281 (339)
T ss_dssp             CEEEEEEEEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHH-HHHHH----HTCS-HHHHHTT
T ss_pred             CEEEEEeCCcCcHHHHHHhccCeeeecCCCEEEe------eccchHHHHHHHhhccHH-HHHHH----cCCC-HHHHHHc
Confidence            9999999999999999999999999999999997      568888888777776654 66666    6798 9999999


Q ss_pred             CccceecCC
Q 015541          247 GLGTDYVPS  255 (405)
Q Consensus       247 GLv~~vv~~  255 (405)
                      |+||+|||.
T Consensus       282 GlVd~VV~e  290 (339)
T 2f9y_A          282 KLIDSIIPE  290 (339)
T ss_dssp             TSCSCCCCC
T ss_pred             CCeeEEecC
Confidence            999999983

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=98.85  E-value=7.5e-09  Score=94.93  Aligned_cols=138  Identities=12%  Similarity=0.070  Sum_probs=96.1

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEe--eCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCc
Q 015541           90 AMNLDMDIKYKSFLDEWESDPRVKCVLIE--GSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP  167 (405)
Q Consensus        90 al~~~m~~~L~~~l~~~~~d~~v~~vvl~--g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP  167 (405)
                      .++..+.+.+.+.|..++.|+.++.|+|.  +.|       |++..                    ...+...|..+++|
T Consensus        35 ~I~~~~a~~i~~~L~~~~~~~~~k~I~l~InSPG-------G~v~a--------------------~~~I~~~i~~~~~p   87 (208)
T 2cby_A           35 EVNDEIANRLCAQILLLAAEDASKDISLYINSPG-------GSISA--------------------GMAIYDTMVLAPCD   87 (208)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC-------BCHHH--------------------HHHHHHHHHHCSSC
T ss_pred             EECHHHHHHHHHHHHHHHhCCCCCCEEEEEECCC-------CCHHH--------------------HHHHHHHHHhcCCC
Confidence            35778999999999999877667766664  444       33211                    12344467788999


Q ss_pred             EEEEECCccccccceecccccE--EEEeCCeeeeCcccccccc---CCccHH------------HHHhcCCChH-HHHHH
Q 015541          168 YISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLF---PDVGFS------------YIAAKGPGGG-SVGAY  229 (405)
Q Consensus       168 vIa~v~G~a~GgG~~lal~~D~--riate~a~f~~PE~~iGl~---P~~G~~------------~~L~r~~G~~-~~a~~  229 (405)
                      |++.+.|.|.++|.-++++||.  |++.+++.+++.+..-|..   .+....            ..+.+..|.. .....
T Consensus        88 V~~~v~g~AaS~g~~Ia~agd~~~~~a~p~a~igih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~  167 (208)
T 2cby_A           88 IATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEA  167 (208)
T ss_dssp             EEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             EEEEECcEeHHHHHHHHhCCCcCCEEEcCCcEEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence            9999999999999999999998  9999999998876542211   010000            1122223332 13455


Q ss_pred             HHhcCCCCCcHHHHHHcCccceecCC
Q 015541          230 LGMTGKRISTPSDALFAGLGTDYVPS  255 (405)
Q Consensus       230 l~ltG~~i~~a~eA~~~GLv~~vv~~  255 (405)
                      ++-.|+.++ |+||+++||||++...
T Consensus       168 ~~~~~~~~t-a~eA~e~GLvD~i~~~  192 (208)
T 2cby_A          168 DSDRDRWFT-AAEALEYGFVDHIITR  192 (208)
T ss_dssp             HHHTTCEEE-HHHHHHHTSCSEECSC
T ss_pred             HHhCCcEEc-HHHHHHcCCCcEecCc
Confidence            677899999 9999999999999865

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=98.27  E-value=1.5e-06  Score=78.47  Aligned_cols=138  Identities=14%  Similarity=0.060  Sum_probs=92.0

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEe--eCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCc
Q 015541           90 AMNLDMDIKYKSFLDEWESDPRVKCVLIE--GSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP  167 (405)
Q Consensus        90 al~~~m~~~L~~~l~~~~~d~~v~~vvl~--g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP  167 (405)
                      .++..+.+.+.+.|..++.++.++.|+|.  +.|       |++..                    ...+...|...++|
T Consensus        34 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPG-------G~v~a--------------------~~~I~~~i~~~~~p   86 (193)
T 1yg6_A           34 QVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG-------GVITA--------------------GMSIYDTMQFIKPD   86 (193)
T ss_dssp             SBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC-------BCHHH--------------------HHHHHHHHHHSSSC
T ss_pred             EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECcC-------CCHHH--------------------HHHHHHHHHhcCCC
Confidence            46788999999999988876667776664  444       33321                    12344467788999


Q ss_pred             EEEEECCccccccceecccccE--EEEeCCeeeeCcccccccc---CCccHHH------------HHhcCCChH-HHHHH
Q 015541          168 YISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLF---PDVGFSY------------IAAKGPGGG-SVGAY  229 (405)
Q Consensus       168 vIa~v~G~a~GgG~~lal~~D~--riate~a~f~~PE~~iGl~---P~~G~~~------------~L~r~~G~~-~~a~~  229 (405)
                      |++.+.|.|..+|.-++++||.  |++.+++.+++.....|..   .+.....            .+.+..|.. .....
T Consensus        87 V~~~v~g~AaS~g~~Ia~ag~~~~r~a~p~s~i~ih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~  166 (193)
T 1yg6_A           87 VSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIER  166 (193)
T ss_dssp             EEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             EEEEEeeeHHHHHHHHHHCCCcCcEEEecCcEEEEEeccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            9999999999999999999999  9999999987755443321   1110000            111222322 12223


Q ss_pred             HHhcCCCCCcHHHHHHcCccceecCC
Q 015541          230 LGMTGKRISTPSDALFAGLGTDYVPS  255 (405)
Q Consensus       230 l~ltG~~i~~a~eA~~~GLv~~vv~~  255 (405)
                      ++-.+..++ |+||+++||||+++.+
T Consensus       167 ~~~~~~~~t-a~eA~~~GliD~i~~~  191 (193)
T 1yg6_A          167 DTERDRFLS-APEAVEYGLVDSILTH  191 (193)
T ss_dssp             HTSSCEEEE-HHHHHHHTSSSEECCC
T ss_pred             HhcCCeEEc-HHHHHHcCCCCEecCC
Confidence            322234468 9999999999999865

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=98.24  E-value=5.3e-06  Score=75.53  Aligned_cols=141  Identities=11%  Similarity=0.092  Sum_probs=93.9

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEE--eeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCC
Q 015541           89 NAMNLDMDIKYKSFLDEWESDPRVKCVLI--EGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKK  166 (405)
Q Consensus        89 Nal~~~m~~~L~~~l~~~~~d~~v~~vvl--~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~k  166 (405)
                      ..++..+.+.+...|..++.++..+.|+|  .+.|       |++..                    ...+...|..+++
T Consensus        34 g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPG-------G~v~~--------------------~~~I~~~i~~~~~   86 (203)
T 3qwd_A           34 SQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG-------GSVTA--------------------GFAIYDTIQHIKP   86 (203)
T ss_dssp             SCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC-------BCHHH--------------------HHHHHHHHHHSSS
T ss_pred             CEECHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCC-------CCHHH--------------------HHHHHHHHHHhcC
Confidence            34788999999999999987666665555  4444       33321                    1234446778899


Q ss_pred             cEEEEECCccccccceeccccc--EEEEeCCeeeeCccccccc---cCCccHH-H-----------HHhcCCChH-HHHH
Q 015541          167 PYISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGL---FPDVGFS-Y-----------IAAKGPGGG-SVGA  228 (405)
Q Consensus       167 PvIa~v~G~a~GgG~~lal~~D--~riate~a~f~~PE~~iGl---~P~~G~~-~-----------~L~r~~G~~-~~a~  228 (405)
                      ||++.+.|.|.++|.-|+++||  .|++.++++|.+....-|.   ..+.--. .           .+.+.-|.. ....
T Consensus        87 ~V~t~~~G~AaSag~~i~~ag~~g~r~~~p~a~imiHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tG~~~e~i~  166 (203)
T 3qwd_A           87 DVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQ  166 (203)
T ss_dssp             CEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCCSSSTTTTSCHHHHHHHHHTTHHHHHHHHHHHHHCCCHHHHH
T ss_pred             CcEEEEeeeehhHHHHHHHcCCcCeEEEcCCceEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            9999999999999999999999  6999999999875543221   1111100 0           111112221 1233


Q ss_pred             HHHhcCCCCCcHHHHHHcCccceecCCCC
Q 015541          229 YLGMTGKRISTPSDALFAGLGTDYVPSGN  257 (405)
Q Consensus       229 ~l~ltG~~i~~a~eA~~~GLv~~vv~~~~  257 (405)
                      .++-...-++ |+||+++||||+++.+..
T Consensus       167 ~~~~~d~~lt-a~EA~e~GliD~I~~~~~  194 (203)
T 3qwd_A          167 KDTDRDNFLT-AEEAKEYGLIDEVMVPET  194 (203)
T ss_dssp             HHHTSCCCEE-HHHHHHHTSCSEECCCCC
T ss_pred             HHhhcCceec-HHHHHHcCCcCEecCCcc
Confidence            3333345578 999999999999997653

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=98.22  E-value=6.2e-06  Score=75.79  Aligned_cols=138  Identities=10%  Similarity=-0.010  Sum_probs=88.8

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEe--eCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCc
Q 015541           90 AMNLDMDIKYKSFLDEWESDPRVKCVLIE--GSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP  167 (405)
Q Consensus        90 al~~~m~~~L~~~l~~~~~d~~v~~vvl~--g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP  167 (405)
                      .++..+.+.+.+.|..++.++. +.|+|.  +.|       |++..                    ...+...|...++|
T Consensus        47 ~I~~~~a~~i~~~L~~l~~~~~-k~I~l~INSPG-------Gsv~a--------------------~~~I~~~i~~~~~p   98 (215)
T 2f6i_A           47 EINKKTADELISQLLYLDNINH-NDIKIYINSPG-------GSINE--------------------GLAILDIFNYIKSD   98 (215)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCC-SCEEEEEEECC-------BCHHH--------------------HHHHHHHHHHSSSC
T ss_pred             EECHHHHHHHHHHHHHHHhCCC-CcEEEEEECCC-------CCHHH--------------------HHHHHHHHHhcCCC
Confidence            4677888999999998876554 655554  544       33321                    12344467788999


Q ss_pred             EEEEECCccccccceecccccE--EEEeCCeeeeCccccccc---cCCccHHH------------HHhcCCChH-HHHHH
Q 015541          168 YISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGL---FPDVGFSY------------IAAKGPGGG-SVGAY  229 (405)
Q Consensus       168 vIa~v~G~a~GgG~~lal~~D~--riate~a~f~~PE~~iGl---~P~~G~~~------------~L~r~~G~~-~~a~~  229 (405)
                      |++.+.|.|..+|.-++++||.  |+|.+++.+.+.....|.   ..+.....            .+.+..|.. .....
T Consensus        99 V~t~v~g~AAS~g~~Ia~agd~g~i~a~p~s~i~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~ya~~~g~~~e~i~~  178 (215)
T 2f6i_A           99 IQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEK  178 (215)
T ss_dssp             EEEEEEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             EEEEEeeEhHhHHHHHHHcCCcccEEEcCCCEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence            9999999999999999999999  999999999876544332   11111000            001111211 12222


Q ss_pred             HHhcCCCCCcHHHHHHcCccceecCCC
Q 015541          230 LGMTGKRISTPSDALFAGLGTDYVPSG  256 (405)
Q Consensus       230 l~ltG~~i~~a~eA~~~GLv~~vv~~~  256 (405)
                      ++-.+..++ |+||+++||||++..+.
T Consensus       179 ~~~~~~~lt-a~eA~e~GLiD~I~~~~  204 (215)
T 2f6i_A          179 DSDRDYYMN-ALEAKQYGIIDEVIETK  204 (215)
T ss_dssp             HHHTTCEEC-HHHHHHHTSCSEECCCS
T ss_pred             HHhCCeecC-HHHHHHCCCCCEecCCc
Confidence            322234468 99999999999998753

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=98.14  E-value=1e-05  Score=76.82  Aligned_cols=145  Identities=14%  Similarity=0.088  Sum_probs=94.2

Q ss_pred             EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEe--eCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541           79 VITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIE--GSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (405)
Q Consensus        79 ~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~--g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (405)
                      +|.|+.+     ++..+.+.+...|..++.++..+.|+|.  +.|       |++..                    ...
T Consensus        84 II~l~G~-----I~d~~a~~iiaqL~~l~~ed~~k~I~L~INSPG-------GsV~a--------------------g~a  131 (277)
T 1tg6_A           84 IVCVMGP-----IDDSVASLVIAQLLFLQSESNKKPIHMYINSPG-------GVVTA--------------------GLA  131 (277)
T ss_dssp             EEEEESS-----BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC-------BCHHH--------------------HHH
T ss_pred             EEEEcCE-----ECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC-------CCHHH--------------------HHH
Confidence            4666644     7888999999999888665455666664  444       33321                    113


Q ss_pred             HHHHHHhCCCcEEEEECCccccccceecccccE--EEEeCCeeeeCccccccccC---CccHHH------------HHhc
Q 015541          157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFP---DVGFSY------------IAAK  219 (405)
Q Consensus       157 l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~--riate~a~f~~PE~~iGl~P---~~G~~~------------~L~r  219 (405)
                      +...|...++||++.+.|.|..+|.-|+++||.  |++.+++.+++-...-|..-   |.....            .+.+
T Consensus       132 Iyd~I~~~k~pV~t~v~G~AASaG~~Ia~Agd~gkr~a~P~S~ImihqP~~g~~G~a~Di~~~a~ei~~~~~~~~~i~a~  211 (277)
T 1tg6_A          132 IYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAK  211 (277)
T ss_dssp             HHHHHHHSCSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCEEEEEccEeHHHHHHHHHCCCcCCEEEecCCEEEEecccccccCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344577788999999999999999999999998  99999999877554333211   000000            0111


Q ss_pred             CCChH-HHHHHHHhcCCCCCcHHHHHHcCccceecCCC
Q 015541          220 GPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPSG  256 (405)
Q Consensus       220 ~~G~~-~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~  256 (405)
                      ..|.. .....++-.+..++ |+||+++||||+++...
T Consensus       212 ~tG~~~e~i~~~~drd~~lt-a~EAle~GLID~I~~~~  248 (277)
T 1tg6_A          212 HTKQSLQVIESAMERDRYMS-PMEAQEFGILDKVLVHP  248 (277)
T ss_dssp             HHCCCHHHHHHHHSSCEEEC-HHHHHHHTSCSEECSSC
T ss_pred             HhCCCHHHHHHHHhcCcccC-HHHHHHCCCCCEecCcc
Confidence            11221 12233333345568 99999999999999764

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=98.02  E-value=9e-06  Score=73.89  Aligned_cols=136  Identities=14%  Similarity=0.024  Sum_probs=90.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEe--eCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCC
Q 015541           89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIE--GSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKK  166 (405)
Q Consensus        89 Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~--g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~k  166 (405)
                      ..++..+.+.+...|..++.++..+.|+|.  +.|       |++..                    ...+...|...++
T Consensus        37 g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~INSpG-------G~v~~--------------------~~~I~~~i~~~~~   89 (201)
T 3p2l_A           37 GEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPG-------GMVTA--------------------GMGVYDTMQFIKP   89 (201)
T ss_dssp             SCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC-------BCHHH--------------------HHHHHHHHHHSSS
T ss_pred             CEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC-------CCHHH--------------------HHHHHHHHHHhCC
Confidence            346888999999999998876656665554  444       33321                    1234446778899


Q ss_pred             cEEEEECCccccccceecccccE--EEEeCCeeeeCccccccccCCccHHH-------HH-----------hcCCChH-H
Q 015541          167 PYISLMDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFSY-------IA-----------AKGPGGG-S  225 (405)
Q Consensus       167 PvIa~v~G~a~GgG~~lal~~D~--riate~a~f~~PE~~iGl~P~~G~~~-------~L-----------~r~~G~~-~  225 (405)
                      ||++.+.|.|.++|.-|+++||.  |++.+++.+.+....-|.   .|-..       .+           .+..|.. .
T Consensus        90 ~v~t~~~G~AaS~g~~i~~ag~~g~r~~~p~a~imiH~p~~~~---~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~e  166 (201)
T 3p2l_A           90 DVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGF---RGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLE  166 (201)
T ss_dssp             CEEEEEEEEEETHHHHHHHTSSTTCEEECTTCEEEECCCEEEE---EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred             CeEEEEcCEehhHHHHHHHcCccCCEEEcCCCeEEEecccccc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHH
Confidence            99999999999999999999998  999999998776554221   11110       01           1112221 0


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCC
Q 015541          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPS  255 (405)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~  255 (405)
                      ....++-....++ |+||+++||||+++++
T Consensus       167 ~i~~~~~~~~~lt-a~EA~e~GliD~I~~~  195 (201)
T 3p2l_A          167 TIVKDTDRDNFMM-ADEAKAYGLIDHVIES  195 (201)
T ss_dssp             HHHHHTSSCEEEE-HHHHHHHTSCSEECCC
T ss_pred             HHHHHhhcCeeec-HHHHHHcCCccEecCC
Confidence            2222222223368 9999999999999976

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=97.72  E-value=0.00011  Score=77.30  Aligned_cols=87  Identities=5%  Similarity=-0.013  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccC-CChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEEC
Q 015541           95 MDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAG-MDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMD  173 (405)
Q Consensus        95 m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG-~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~  173 (405)
                      ...++.+.|+.++.|+.++.|+|.-..+     | +++...                 ...++.+..+....|||||.++
T Consensus        71 ~~~~i~~~L~~a~~d~~ik~I~L~insp-----GgG~v~~~-----------------~~I~~~i~~~k~~gkpvva~~~  128 (593)
T 3bf0_A           71 SLFDIVNTIRQAKDDRNITGIVMDLKNF-----AGGDQPSM-----------------QYIGKALKEFRDSGKPVYAVGE  128 (593)
T ss_dssp             EHHHHHHHHHHHHHCTTCCCEEEECTEE-----EECCHHHH-----------------HHHHHHHHHHHHTTCCEEEEES
T ss_pred             CHHHHHHHHHHHHhCCCceEEEEEeCCC-----CCCcHHHH-----------------HHHHHHHHHHHhcCCeEEEEEc
Confidence            4677889999999999999999986432     3 555432                 2344555566666799999998


Q ss_pred             CccccccceecccccEEEEeCCeeeeCcccc
Q 015541          174 GVTMGFGIGISGHGRYRIVTEKTLLAMPENG  204 (405)
Q Consensus       174 G~a~GgG~~lal~~D~riate~a~f~~PE~~  204 (405)
                      +. .-||.-|+++||.+++.+.+.++.-...
T Consensus       129 ~a-as~~y~lAsaad~i~~~P~~~vg~~g~~  158 (593)
T 3bf0_A          129 NY-SQGQYYLASFANKIWLSPQGVVDLHGFA  158 (593)
T ss_dssp             CE-EHHHHHHHTTSSEEEECTTCCEECCCCB
T ss_pred             cc-hhHHHHHHHhCCEEEECCCceEEEeccc
Confidence            74 5567889999999999999988876553

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=97.58  E-value=0.00028  Score=73.77  Aligned_cols=166  Identities=13%  Similarity=0.003  Sum_probs=106.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (405)
Q Consensus        77 v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (405)
                      |.++-.+.--..-++.....+.+.++++.+.+. .+-+|.|.-+      .|+.+.+-....   .......+    .+.
T Consensus       107 v~v~a~D~t~~gGs~g~~~~~Ki~r~~e~A~~~-~lPvI~l~dS------gGArlqe~~~~l---~~~~~~g~----i~~  172 (587)
T 1pix_A          107 CVVVASDNKKLAGAWVPGQAECLLRASDTAKTL-HVPLVYVLNC------SGVKFDEQEKVY---PNRRGGGT----PFF  172 (587)
T ss_dssp             EEEEEECTTTTTTEECTTHHHHHHHHHHHHHHH-TCCEEEEECC------CEECGGGHHHHS---SSTTSTTH----HHH
T ss_pred             EEEEEECCccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeC------CCCCccccchhc---cccccHHH----HHH
Confidence            555555555456788888899999999888876 3556666543      355565433211   00011112    223


Q ss_pred             HHHHHHhCCCcEEEEECCccccccceecccccEEEEeCC-eeeeC--ccccccccCCccHHHHHhcCCChHHHHHHHH-h
Q 015541          157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAM--PENGIGLFPDVGFSYIAAKGPGGGSVGAYLG-M  232 (405)
Q Consensus       157 l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~-a~f~~--PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~-l  232 (405)
                      .+..+.....|+|++|.|.|.|||... ..||++|++++ +.+++  |++--++-|-        -..+.. .+.+++ .
T Consensus       173 ~~~~ls~~giP~Isvv~G~~~GGga~~-a~~d~vim~e~~a~i~~~GP~vi~~~~~~--------~~~d~~-~A~el~~~  242 (587)
T 1pix_A          173 RNAELNQLGIPVIVGIYGTNPAGGGYH-SISPTVIIAHEKANMAVGGAGIMGGMNPK--------GHVDLE-YANEIADM  242 (587)
T ss_dssp             HHHHHHHTTCCEEEEECSEEETHHHHH-HHSSSEEEEETTCEEESCCCTTCCSCCSS--------SSCCHH-HHHHHHHH
T ss_pred             HHHHHhCCCCCEEEEEecCCcHHHHHH-HhcCceEEecCCcEEEecCHHHHhhhccc--------cccchh-HHHHHHHH
Confidence            345677889999999999999999999 88999988875 88877  3222111110        124554 889998 8


Q ss_pred             cCCCCC----cHHHHH--HcCccceecCCCC-hHHHHHHHH
Q 015541          233 TGKRIS----TPSDAL--FAGLGTDYVPSGN-LGSLKEALL  266 (405)
Q Consensus       233 tG~~i~----~a~eA~--~~GLv~~vv~~~~-l~~~~~~l~  266 (405)
                      ||+.++    ++.+.+  ..|++|++++.++ ..+.+.++.
T Consensus       243 tge~v~~e~lgga~~h~~~~GvvD~vv~~e~~a~~~~r~~l  283 (587)
T 1pix_A          243 VDRTGKTEPPGAVDIHYTETGFMREVYASEEGVLEGIKKYV  283 (587)
T ss_dssp             HHTTCCCCCSSBHHHHTTTSCCSCEEESSHHHHHHHHHHHH
T ss_pred             hCCccChhhcccHHHHHhhcCceeEecCCHHHHHHHHHHHH
Confidence            888765    134444  5899999998755 333344443

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=97.57  E-value=0.00056  Score=62.07  Aligned_cols=147  Identities=14%  Similarity=0.096  Sum_probs=89.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCce--EEEEeeCCCC---CcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHh
Q 015541           89 NAMNLDMDIKYKSFLDEWESDPRVK--CVLIEGSGPR---AFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISE  163 (405)
Q Consensus        89 Nal~~~m~~~L~~~l~~~~~d~~v~--~vvl~g~g~~---~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~  163 (405)
                      -.++.++.+.+...|..++.++..+  .|.|.+.|.-   ..-.-||+                    .....+...|..
T Consensus        35 ~~I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v--------------------~aglaIyd~m~~   94 (205)
T 4gm2_A           35 SPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGI--------------------TDVISIVDVINY   94 (205)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTHH--------------------HHHHHHHHHHHH
T ss_pred             CEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCCH--------------------HHHHHHHHHHHh
Confidence            3478899999999998887533222  3444565510   00011222                    122345556778


Q ss_pred             CCCcEEEEECCccccccceeccccc--EEEEeCCeeeeCccccccc----cCCccHHH-HHh-----------cCCChH-
Q 015541          164 YKKPYISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGL----FPDVGFSY-IAA-----------KGPGGG-  224 (405)
Q Consensus       164 ~~kPvIa~v~G~a~GgG~~lal~~D--~riate~a~f~~PE~~iGl----~P~~G~~~-~L~-----------r~~G~~-  224 (405)
                      .+.||...+.|.|.+.|.-|+++++  .|++.+++++-+-....|.    ..|.--.. .+-           +.-|.. 
T Consensus        95 ~~~~V~t~~~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~  174 (205)
T 4gm2_A           95 ISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEIISKNTEKDT  174 (205)
T ss_dssp             SSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEEECCCCCCCCSSCCSCHHHHHHHHHHHHHHHHHHHHHHHTCCH
T ss_pred             cCCCEEEEEEeeehhHHHHHHhcCCCCCEEecCCCEEEEecCcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence            8999999999999999999999998  5999999988765444333    22221110 111           111211 


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCC
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSG  256 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~  256 (405)
                      ..-..++-...-++ |+||+++||||+|+..+
T Consensus       175 e~I~~~m~rd~~ms-a~EA~eyGlID~V~~~e  205 (205)
T 4gm2_A          175 NVISNVLERDKYFN-ADEAVDFKLIDHILEKE  205 (205)
T ss_dssp             HHHHHHTTSCEEEE-HHHHHHTTSCSEECCC-
T ss_pred             HHHHHHhcCCcccC-HHHHHHcCCccEeecCC
Confidence            01122222233487 99999999999998753

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=97.56  E-value=0.0034  Score=59.84  Aligned_cols=154  Identities=16%  Similarity=0.143  Sum_probs=98.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (405)
Q Consensus        77 v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (405)
                      |+++..|.--..-+++...-+.+.++++.+.+. .+-+|.|.-.| ++     -..+-..          ..........
T Consensus       123 V~v~a~d~~~~gGs~g~~~~~K~~r~ie~A~~~-~lPlI~l~dsg-Ga-----r~qEGi~----------sl~q~aki~~  185 (285)
T 2f9i_B          123 FGVAVMDSRFRMGSMGSVIGEKICRIIDYCTEN-RLPFILFSASG-GA-----RMQEGII----------SLMQMGKTSV  185 (285)
T ss_dssp             EEEEEECTTTGGGCCCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC-SC-----CGGGHHH----------HHHHHHHHHH
T ss_pred             EEEEEEccccccCcCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCC-Cc-----chhhhhh----------hHhHHHHHHH
Confidence            555555443345789999999999999988876 46677777654 22     1222000          0011233445


Q ss_pred             HHHHHHhCCCcEEEEECCcccccccee-cccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCC
Q 015541          157 LICKISEYKKPYISLMDGVTMGFGIGI-SGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK  235 (405)
Q Consensus       157 l~~~i~~~~kPvIa~v~G~a~GgG~~l-al~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~  235 (405)
                      .+.++.....|+|+++-|.|.||+... ++.+|+++|.+++.+++--      |.+ ....+    +.. .       -+
T Consensus       186 ~l~~~s~~~vP~Isvv~g~~~GG~~as~a~~~D~i~a~p~A~i~~aG------P~v-i~~~~----~~~-~-------~e  246 (285)
T 2f9i_B          186 SLKRHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAG------RRV-IEQTI----NEK-L-------PD  246 (285)
T ss_dssp             HHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSC------HHH-HHHHH----TSC-C-------CT
T ss_pred             HHHHHHcCCCCEEEEEeCCccHHHHHHhhhCCCEEEEeCCcEEEEcC------HHH-HHHHh----ccc-c-------hH
Confidence            666777889999999999999998655 7889999998888776621      111 11111    111 1       12


Q ss_pred             CCCcHHHHHHcCccceecCCCChHHHHHHHH
Q 015541          236 RISTPSDALFAGLGTDYVPSGNLGSLKEALL  266 (405)
Q Consensus       236 ~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~  266 (405)
                      .+.+|+.+.+.|++|.+|+++++.+...++.
T Consensus       247 ~~~~Ae~~~~~G~iD~Iv~~~e~r~~l~~~L  277 (285)
T 2f9i_B          247 DFQTAEFLLEHGQLDKVVHRNDMRQTLSEIL  277 (285)
T ss_dssp             TTTBHHHHHHTTCCSEECCGGGHHHHHHHHH
T ss_pred             hHhhHHHHHhcCCccEEeChHHHHHHHHHHH
Confidence            3344788889999999999876555444443

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=97.37  E-value=0.0022  Score=66.15  Aligned_cols=148  Identities=20%  Similarity=0.163  Sum_probs=96.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (405)
Q Consensus        77 v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (405)
                      |.++..+---..-++.....+.+.++++.+.+. .+-+|.|.-+|      |+-+.+-..             .+...-+
T Consensus        99 v~v~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~dSg------GaRmqEg~~-------------~l~~~~~  158 (530)
T 3iav_A           99 VAVFSQDFTVFGGALGEVYGQKIVKVMDFALKT-GCPVVGINDSG------GARIQEGVA-------------SLGAYGE  158 (530)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCC------SBCGGGTHH-------------HHHHHHH
T ss_pred             EEEEEECCCcceEeccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC------Ccchhhhhh-------------hHHHHHH
Confidence            444444444467889999999999999888776 46677776544      223322111             1111122


Q ss_pred             HHHHHHhC--CCcEEEEECCccccccceecccccEEEEeCC-eeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhc
Q 015541          157 LICKISEY--KKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMT  233 (405)
Q Consensus       157 l~~~i~~~--~kPvIa~v~G~a~GgG~~lal~~D~riate~-a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~lt  233 (405)
                      ++..+..+  ..|+|++|.|.|.|||......||++|++++ +.+.+-                    |+. .-.  ..|
T Consensus       159 i~~~~~~~s~~iP~Isvv~G~~~GG~a~~~al~D~~im~~~~a~i~~a--------------------GP~-vi~--~~~  215 (530)
T 3iav_A          159 IFRRNTHASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFIT--------------------GPD-VIK--TVT  215 (530)
T ss_dssp             HHHHHHHTTTTSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------CHH-HHH--HHH
T ss_pred             HHHHHHHHcCCCCEEEEEecCcchHHHHHHHhCCEEEEecCCcEEEec--------------------CHH-HHH--HHh
Confidence            22222222  3999999999999999998889999999985 877762                    322 111  256


Q ss_pred             CCCCCcHHHH-------HHcCccceecCCCC-hHHHHHHHHHh
Q 015541          234 GKRISTPSDA-------LFAGLGTDYVPSGN-LGSLKEALLAV  268 (405)
Q Consensus       234 G~~i~~a~eA-------~~~GLv~~vv~~~~-l~~~~~~l~~~  268 (405)
                      |+.++ +++.       ...|++|+++++++ ..+.+.++...
T Consensus       216 ge~v~-~e~LGGa~~h~~~sGv~d~va~de~~a~~~~r~~ls~  257 (530)
T 3iav_A          216 GEDVG-FEELGGARTHNSTSGVAHHMAGDEKDAVEYVKQLLSY  257 (530)
T ss_dssp             CCCCC-HHHHHBHHHHHHTSCCCSEEESSHHHHHHHHHHHHHH
T ss_pred             CCcCC-hhhcchHHHHHhccCceeEEecChHHHHHHHHHHHHh
Confidence            78887 7664       57999999998753 44555555443

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=97.06  E-value=0.011  Score=60.88  Aligned_cols=148  Identities=15%  Similarity=0.106  Sum_probs=94.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (405)
Q Consensus        77 v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (405)
                      |.++..+.--..-++.....+.+.++++.+.+. .+-+|.|.-+|      |+.+.+-...         ...+ ...+.
T Consensus       107 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~lPvI~l~dSG------GARmqeg~~s---------l~~~-~~i~~  169 (531)
T 3n6r_B          107 VYVFSQDFTVLGGSVSETHSKKICKIMDMAMQN-GAPVIGINDSG------GARIQEGVDS---------LAGY-GEVFQ  169 (531)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCC------CBCGGGTHHH---------HHHH-HHHHH
T ss_pred             EEEEEECCCcccccccHHHHHHHHHHHHHHHHc-CCCEEEEeCCC------ccccCcccch---------hhhH-HHHHH
Confidence            444555544456889999999999999988775 45677776543      3334331110         0111 11111


Q ss_pred             HHHHHHhCCCcEEEEECCccccccceecccccEEEEeCC-eeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCC
Q 015541          157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK  235 (405)
Q Consensus       157 l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~-a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~  235 (405)
                      .+..+. -..|+|++|.|.|.|||......||++|+.++ +.+.+                    -|+. .-.  ..||+
T Consensus       170 ~~~~~s-~~iP~Isvv~Gp~~GG~a~s~a~~D~vi~~~~~a~i~~--------------------aGP~-vI~--~~~ge  225 (531)
T 3n6r_B          170 RNIMAS-GVVPQISMIMGPCAGGAVYSPAMTDFIFMVKDSSYMFV--------------------TGPD-VVK--TVTNE  225 (531)
T ss_dssp             HHHHTT-TTSCEEEEECSCCBGGGGHHHHHSSEEEEETTTCBCBS--------------------SCHH-HHH--HHHCC
T ss_pred             HHHHHh-CCCCEEEEEeCCcchHHHHHhhhCCEEEEecCCceEee--------------------cCHH-HHH--HHhCC
Confidence            111222 35899999999999999988888999999985 66554                    2322 111  25788


Q ss_pred             CCCcHHHH-------HHcCccceecCCCC-hHHHHHHHH
Q 015541          236 RISTPSDA-------LFAGLGTDYVPSGN-LGSLKEALL  266 (405)
Q Consensus       236 ~i~~a~eA-------~~~GLv~~vv~~~~-l~~~~~~l~  266 (405)
                      .++ +++.       ...|++|.+++.++ ..+.+.++.
T Consensus       226 ~v~-~E~LGGa~~h~~~sG~~d~v~~~e~~a~~~~r~ll  263 (531)
T 3n6r_B          226 QVS-AEELGGATTHTRKSSVADAAFENDVEALAEVRRLV  263 (531)
T ss_dssp             CCC-HHHHHBHHHHHHTTSCCSEEESSHHHHHHHHHHHH
T ss_pred             ccC-hhhcchHHHHhhccCcceEEeCCHHHHHHHHHHHH
Confidence            998 8887       78999999998743 344444444

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=96.91  E-value=0.02  Score=59.30  Aligned_cols=147  Identities=14%  Similarity=0.095  Sum_probs=93.4

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (405)
Q Consensus        77 v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (405)
                      |.++-.+--=..-++.....+.+.++++.+.+. .+-+|.|.-+|      |+.+.+-...             +...-+
T Consensus       110 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~dSG------GARmqeg~~s-------------l~~~~~  169 (548)
T 2bzr_A          110 VCIFSQDATVFGGSLGEVYGEKIVKVQELAIKT-GRPLIGINDGA------GARIQEGVVS-------------LGLYSR  169 (548)
T ss_dssp             EEEEEECTTSGGGCCCHHHHHHHHHHHHHHHHH-TCCEEEEECCC------SCCGGGTTHH-------------HHHHHH
T ss_pred             EEEEEEcCccccCCCChhHHHHHHHHHHHHHHc-CCCEEEEEcCC------CCCchhHHHH-------------HHHHHH
Confidence            444444444456789999999999999988775 46677776544      4444432110             111112


Q ss_pred             HHHHHH--hCCCcEEEEECCccccccceecccccEEEEeCC-eeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhc
Q 015541          157 LICKIS--EYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMT  233 (405)
Q Consensus       157 l~~~i~--~~~kPvIa~v~G~a~GgG~~lal~~D~riate~-a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~lt  233 (405)
                      ++..+.  .-..|+|+++.|+|.||+......||++|+.++ +.+++-                    |+. .-.  ..|
T Consensus       170 i~~~~~~~s~~iP~Isvv~gp~~GG~a~s~al~D~ii~~~~~a~i~~a--------------------GP~-vI~--~~~  226 (548)
T 2bzr_A          170 IFRNNILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFIT--------------------GPD-VIK--TVT  226 (548)
T ss_dssp             HHHHHHHTTTTSCEEEEECSEEESGGGHHHHHSSEEEEETTTCEEESS--------------------CHH-HHH--HHH
T ss_pred             HHHHHHHhcCCCcEEEEecCCCchHHHHHHHhCCeEEeccCceeEEec--------------------cHH-HHH--HHh
Confidence            222222  334999999999999999998889999999986 776653                    221 111  144


Q ss_pred             CCCCCcH-----HHHH--HcCccceecCCC-ChHHHHHHHHH
Q 015541          234 GKRISTP-----SDAL--FAGLGTDYVPSG-NLGSLKEALLA  267 (405)
Q Consensus       234 G~~i~~a-----~eA~--~~GLv~~vv~~~-~l~~~~~~l~~  267 (405)
                      |+.++ .     .+.+  ..|++|.+++++ +..+...++..
T Consensus       227 ge~v~-~e~lggae~h~~~sG~~d~vv~d~~~~~~~~r~lls  267 (548)
T 2bzr_A          227 GEEVT-MEELGGAHTHMAKSGTAHYAASGEQDAFDYVRELLS  267 (548)
T ss_dssp             CCCCC-HHHHHBHHHHHHTSSCCSEEESSHHHHHHHHHHHHT
T ss_pred             CCcCC-hHhcccHHHHhhccCceeEEeCCHHHHHHHHHHHHH
Confidence            66665 4     3433  599999999863 34444444443

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=96.90  E-value=0.0077  Score=62.11  Aligned_cols=150  Identities=15%  Similarity=0.135  Sum_probs=94.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (405)
Q Consensus        77 v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (405)
                      |.++..+--=..-++.....+.+.++++.+.+. .+-+|.|.-+|      |+.+.+-....         ..+ ...+.
T Consensus        97 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~~SG------GARmqeg~~sl---------~~~-~~i~~  159 (523)
T 1on3_A           97 VHAASQDFTVMGGSAGETQSTKVVETMEQALLT-GTPFLFFYDSG------GARIQEGIDSL---------SGY-GKMFF  159 (523)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEEEC------SBCGGGTHHHH---------HHH-HHHHH
T ss_pred             EEEEEEcCCccCCcCcHHHHHHHHHHHHHHHHc-CCCEEEEEcCC------CCChhhHHHHH---------HHH-HHHHH
Confidence            445555544466889999999999999888775 46677776544      44444322110         111 11111


Q ss_pred             HHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCCC
Q 015541          157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKR  236 (405)
Q Consensus       157 l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~~  236 (405)
                      .+..+ .-..|+|+++.|+|.||+......||++|+.+++.+++-                    |+. .-.  ..||+.
T Consensus       160 ~~~~~-s~~iP~Isvv~gp~~GG~a~s~~l~D~ii~~~~a~i~~a--------------------GP~-vI~--~~~ge~  215 (523)
T 1on3_A          160 ANVKL-SGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFIT--------------------GPQ-VIK--SVTGED  215 (523)
T ss_dssp             HHHHH-TTTSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESS--------------------CHH-HHH--HHHCCC
T ss_pred             HHHHh-cCCCCEEEEEcCCCchHHHHHHhhCCeEEEeCCCEEEec--------------------CHH-HHH--HHhCCc
Confidence            11222 334999999999999999999999999999988877663                    221 111  144666


Q ss_pred             CCcH-----HHHH--HcCccceecCCC-ChHHHHHHHHHh
Q 015541          237 ISTP-----SDAL--FAGLGTDYVPSG-NLGSLKEALLAV  268 (405)
Q Consensus       237 i~~a-----~eA~--~~GLv~~vv~~~-~l~~~~~~l~~~  268 (405)
                      ++ .     .+.+  ..|++|.+++++ +..+...++...
T Consensus       216 ~~-~e~lggae~h~~~~G~vd~vv~d~~~~~~~~r~lL~~  254 (523)
T 1on3_A          216 VT-ADELGGAEAHMAISGNIHFVAEDDDAAELIAKKLLSF  254 (523)
T ss_dssp             CC-HHHHHSHHHHHHTTCCCSEEESSHHHHHHHHHHHHHT
T ss_pred             CC-hHhcccHHHHhhccCceEEEeCCHHHHHHHHHHHHHh
Confidence            66 4     3434  599999999864 344455555443

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=96.75  E-value=0.0029  Score=65.32  Aligned_cols=150  Identities=16%  Similarity=0.054  Sum_probs=93.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (405)
Q Consensus        77 v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (405)
                      |.++..+--=..-++.....+.+.++++.+.+. .+-+|.|..+|      |+.+.+-....         ..+-+-.+.
T Consensus        93 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~~P~I~l~~SG------GaRmqeg~~sl---------~~~~~i~~~  156 (522)
T 1x0u_A           93 VFAYAQDFTVLGGSLGETHANKIVRAYELALKV-GAPVVGINDSG------GARIQEGALSL---------EGYGAVFKM  156 (522)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCC------SBCGGGTHHHH---------HHHHHHHHH
T ss_pred             EEEEEecCceeCccccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC------CCChhHHHHHH---------HHHHHHHHH
Confidence            444444444456789999999999999888775 56678887544      44444322110         111111112


Q ss_pred             HHHHHHhCCCcEEEEECCccccccceecccccEEEEeCC-e-eeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcC
Q 015541          157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-T-LLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTG  234 (405)
Q Consensus       157 l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~-a-~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG  234 (405)
                      + ..+ .-..|+|+++.|+|.||+......||++|+.++ + .+++                    -|+. . .+ ..||
T Consensus       157 ~-~~~-s~~iP~Isvv~gp~~GG~a~s~~l~D~~i~~~~~a~~i~~--------------------aGP~-v-I~-~~~g  211 (522)
T 1x0u_A          157 N-VMA-SGVIPQITIMAGPAAGGAVYSPALTDFIIMIKGDAYYMFV--------------------TGPE-I-TK-VVLG  211 (522)
T ss_dssp             H-HHH-TTTSCEEEEECSEEEGGGGHHHHHSSEEEEECSTTCEEES--------------------SCHH-H-HH-HTTC
T ss_pred             H-HHh-CCCCcEEEEEcCCCchHHHHHHhcCCeEEEecCCccEEEe--------------------cCHH-H-HH-HHhC
Confidence            1 222 345999999999999999999999999999987 6 6655                    1211 1 11 1456


Q ss_pred             CCCCcH-----HHHH--HcCccceecCCC-ChHHHHHHHHHh
Q 015541          235 KRISTP-----SDAL--FAGLGTDYVPSG-NLGSLKEALLAV  268 (405)
Q Consensus       235 ~~i~~a-----~eA~--~~GLv~~vv~~~-~l~~~~~~l~~~  268 (405)
                      +.++ .     .+.+  ..|++|.+++++ +..+...++...
T Consensus       212 e~~~-~e~lggae~~~~~~G~~d~vv~~~~~~~~~~~~ll~~  252 (522)
T 1x0u_A          212 EEVS-FQDLGGAVVHATKSGVVHFMVDSEQEAINLTKRLLSY  252 (522)
T ss_dssp             CCCC-HHHHHBHHHHHHTTCCCSEEESCHHHHHHHHHHHHHH
T ss_pred             CcCC-hhhcchHHHHhhcCceeEEEeCCHHHHHHHHHHHHHh
Confidence            6665 3     3434  589999999864 344455555443

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=96.65  E-value=0.036  Score=57.34  Aligned_cols=143  Identities=14%  Similarity=0.160  Sum_probs=92.2

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (405)
Q Consensus        77 v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (405)
                      |.++..+.--+.-++.....+.+.++++.+.+. .+-+|.|.-+| ++.     +.+ .....  .......+.|    .
T Consensus       123 v~V~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~-~lPvI~l~dSg-GAR-----l~~-q~~~~--~~~~~~~~i~----~  188 (555)
T 3u9r_B          123 CMIVGNDATVKGGTYYPLTVKKHLRAQAIALEN-RLPCIYLVDSG-GAN-----LPR-QDEVF--PDREHFGRIF----F  188 (555)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCC-CBC-----GGG-GGGTS--SSTTSTTHHH----H
T ss_pred             EEEEEECCccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEECCC-CCC-----CCC-cceee--cccccHHHHH----H
Confidence            555555555466789999999999999988876 45567665443 333     211 00000  0000112222    2


Q ss_pred             HHHHHHhCCCcEEEEECCccccccceecccccEEEEeC-CeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCC
Q 015541          157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE-KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK  235 (405)
Q Consensus       157 l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate-~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~  235 (405)
                      .+..+.....|+|++|.|.|.|||.-....||++|+.+ ++.+.+                    -|+. .-.  ..||+
T Consensus       189 ~~~~ls~~giP~Isvv~G~~~GGga~~~a~~d~vim~e~~a~i~~--------------------aGP~-vik--~~~ge  245 (555)
T 3u9r_B          189 NQANMSARGIPQIAVVMGSCTAGGAYVPAMSDETVMVREQATIFL--------------------AGPP-LVK--AATGE  245 (555)
T ss_dssp             HHHHHHHTTCCEEEEECSCCBGGGGHHHHTSSEEEEETTTCBCBS--------------------SCHH-HHH--HHHCC
T ss_pred             HHHHHhcCCCCEEEEEecCCCccHHHHHHhCCceEEecCCceEEE--------------------ccHH-HHH--HHhcC
Confidence            33356677899999999999999999989999988876 353333                    1221 111  26789


Q ss_pred             CCCcHHHH-------HHcCccceecCCCC
Q 015541          236 RISTPSDA-------LFAGLGTDYVPSGN  257 (405)
Q Consensus       236 ~i~~a~eA-------~~~GLv~~vv~~~~  257 (405)
                      .++ +++.       ...|++|.++++++
T Consensus       246 ~~~-~e~LGGa~~h~~~sGv~d~v~~de~  273 (555)
T 3u9r_B          246 VVS-AEELGGADVHCKVSGVADHYAEDDD  273 (555)
T ss_dssp             CCC-HHHHHBHHHHHHTTCSCSEEESSHH
T ss_pred             ccC-hhhccchhhhhhccCceeEEeCCHH
Confidence            998 7877       68999999998754

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=96.55  E-value=0.041  Score=56.67  Aligned_cols=201  Identities=14%  Similarity=0.136  Sum_probs=130.0

Q ss_pred             CccEEEEE-eeCcEEEEEEcCCCCCC-------------CCCHHHHHHHHHHHHHHh-cCCCceEEEEeeCCCCCcccCC
Q 015541           65 EEFVKGNV-HPNGVAVITLDRPKALN-------------AMNLDMDIKYKSFLDEWE-SDPRVKCVLIEGSGPRAFCAGM  129 (405)
Q Consensus        65 ~~~i~~~~-~~~~v~~ItLnrp~~~N-------------al~~~m~~~L~~~l~~~~-~d~~v~~vvl~g~g~~~FcaG~  129 (405)
                      |+.+.... ...+++.++...|..--             ..-..|..||.+++..+. +..+|...+++..|        
T Consensus       265 y~~~~~ai~ra~r~a~~~~~g~~~a~~~~ld~i~aa~~~~~~l~~~~el~~All~l~~ne~~~~~~~~~t~g--------  336 (556)
T 2w3p_A          265 YKTLDVTIDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAVGTWVFRTEG--------  336 (556)
T ss_dssp             ETTEEEEEETTTTEEEEEEECCSSCCCCSHHHHHHHGGGSHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEES--------
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHhhhcchhhhhhhHHHHHHHhhhhccHHHhHhhhhccC--------
Confidence            34444443 23478888998876322             223458888966665554 67889999998887        


Q ss_pred             ChhhHHHhh---hhCCCCCchHHHHHHHHHHHHHHHhCCCcEEEEE-CCccccc-cceecccccEEEEeC-------Cee
Q 015541          130 DIKGVVAEI---QKDRNTPLVPKVFTAEYSLICKISEYKKPYISLM-DGVTMGF-GIGISGHGRYRIVTE-------KTL  197 (405)
Q Consensus       130 Dl~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v-~G~a~Gg-G~~lal~~D~riate-------~a~  197 (405)
                      |...+....   ....+.=.+.+...-..+.+.+|.-...-++|.| .|.|+.| =++|+++||..++-+       ...
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~  416 (556)
T 2w3p_A          337 DARHLLAADASLMQHKDHWFVRETIGLLRRTLARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPA  416 (556)
T ss_dssp             CHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHTCSSEEEEEECTTCCEEGGGHHHHHTSSEEEECCCTTCTTTSCC
T ss_pred             CHHHHhhhHHHHHhccchHHHHHHHHHHHHHHHHhcccchhheeeecCCcchHHHHHHHHHHhhhhhhhcCCCCCCCCce
Confidence            334443211   1111111122222333456667777888899998 5888866 478999999998843       378


Q ss_pred             eeCccccccccCCccHHHHHh-cCCChH-HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCc
Q 015541          198 LAMPENGIGLFPDVGFSYIAA-KGPGGG-SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDP  274 (405)
Q Consensus       198 f~~PE~~iGl~P~~G~~~~L~-r~~G~~-~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~  274 (405)
                      +.+.+.++|.+|-+-+-.+|. |-.|.. .+..--.-.|+.++ +++|.++|||+...++-+.++..+-..++..+-.|
T Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (556)
T 2w3p_A          417 ITLSEVNFGLYPMVTHQSRLARRFYEETEPLDAVRSRIGQAIK-PVEAERLGLVTASPDDIDWADEIRIALEERAAMSP  494 (556)
T ss_dssp             EECCGGGGTTSCCTTSSCHHHHHTTTCHHHHHHHHTTTTSCBC-HHHHHHTTSSSBCCCTTTHHHHHHHHHHHHHHSCH
T ss_pred             eEeeccccCcccCCCchhHHHHHhcCCcchHHHHHHHhCCCCC-HHHHHhcCCeecCcccCChHHHHHHHHHHHhccCc
Confidence            999999999999887766664 444432 12222345699999 99999999999887776666665555444333333

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=96.39  E-value=0.012  Score=60.69  Aligned_cols=156  Identities=12%  Similarity=0.047  Sum_probs=95.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (405)
Q Consensus        77 v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (405)
                      |++|-.|.--..-+++.+..+.+.++++.+.+. ++-+|.|.-.+  .|..|.+-..              ...+...-+
T Consensus       327 V~via~d~~~~gG~l~~~~~~K~ar~i~~a~~~-~~Plv~l~ds~--G~~~G~~~E~--------------~G~~~~~Ak  389 (522)
T 1x0u_A          327 VGIVANNPEEFGGSIDIDAADKAARFIRFCDAF-NIPLISLVDTP--GYVPGTDQEY--------------KGIIRHGAK  389 (522)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC--CBCCSHHHHH--------------TTHHHHHHH
T ss_pred             EEEEEECCCccCCCcCHHHHHHHHHHHHHHhhC-CCCEEEEecCC--CCCCchHHHH--------------HHHHHHHHH
Confidence            444444433234579999999999999988764 56677776553  2544432111              012234445


Q ss_pred             HHHHHHhCCCcEEEEECCccccccceec----ccccEEEEeCCeeeeCccccccccCCccHHHHHhcC-CCh--------
Q 015541          157 LICKISEYKKPYISLMDGVTMGFGIGIS----GHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG-PGG--------  223 (405)
Q Consensus       157 l~~~i~~~~kPvIa~v~G~a~GgG~~la----l~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~-~G~--------  223 (405)
                      +++.+.....|+|+.|-|.|.|||.-..    +.+|+++|.+++.+++       ...-|+.-.+-|. +..        
T Consensus       390 ~l~~~~~~~vP~Isvi~g~~~GGg~~~~a~~a~~~D~v~a~p~A~i~v-------~gpegaa~Il~r~~i~~~~d~~~~~  462 (522)
T 1x0u_A          390 MLYAFAEATVPKITVIVRKSYGGAHIAMSIKSLGADLVYAWPTAEIAV-------TGPEGAVRILYRKEIQQASNPDDVL  462 (522)
T ss_dssp             HHHHHHHCCSCEEEEEEEEEEHHHHHHTCCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTSSSSSSSSSSSSSS
T ss_pred             HHHHHHhCCCCEEEEEeCCcccHHHHHhcccccCCCEEEEeCCCEEEe-------cCHHHHHHHHhhhhhhcccCHHHHH
Confidence            7778889999999999999999866333    3499999988877665       2223333333222 110        


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChH
Q 015541          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLG  259 (405)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~  259 (405)
                      ..+..++-  -..-+ +..+.+.|+||.||++.++.
T Consensus       463 ~~l~~~y~--~~~~~-~~~~~~~G~iD~II~p~~tR  495 (522)
T 1x0u_A          463 KQRIAEYR--KLFAN-PYWAAEKGLVDDVIEPKDTR  495 (522)
T ss_dssp             HHHHHHHH--HHHSS-SHHHHHTTSSSEECCGGGHH
T ss_pred             HHHHHHHH--HhcCC-HHHHHhcCCCcEeECHHHHH
Confidence            00111110  01134 68899999999999986553

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=96.31  E-value=0.06  Score=55.55  Aligned_cols=149  Identities=17%  Similarity=0.079  Sum_probs=90.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (405)
Q Consensus        77 v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (405)
                      |.++-.+---+.-++.....+.+.++++.+.+. .+-+|.|.-+| ++..--++. .+.             .+-+..+.
T Consensus       100 v~v~a~D~t~~gGS~g~~~~~Ki~r~~e~A~~~-~lPvI~l~dSg-GAR~qeg~~-~l~-------------g~~~~~~~  163 (527)
T 1vrg_A          100 VAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKM-GIPVIGINDSG-GARIQEGVD-ALA-------------GYGEIFLR  163 (527)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEEEC-SBCGGGTHH-HHH-------------HHHHHHHH
T ss_pred             EEEEEEeccccCccccHHHHHHHHHHHHHHHHc-CCCEEEEECCC-CCCccchhH-HHH-------------HHHHHHHH
Confidence            555555544456789999999999999988775 45566665544 344321111 111             11111112


Q ss_pred             HHHHHHhCCCcEEEEECCccccccceecccccEEEEeCC-eeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCC
Q 015541          157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK  235 (405)
Q Consensus       157 l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~-a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~  235 (405)
                      . . ...-..|+|++|.|.|.|||......||++|+.++ +.+++                    .|+.  ..+ ..||+
T Consensus       164 ~-~-~~s~~iP~Isvv~Gp~~GG~a~s~al~D~vi~~~~~a~i~~--------------------aGP~--vi~-~~~ge  218 (527)
T 1vrg_A          164 N-T-LASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFI--------------------TGPN--VIK-AVTGE  218 (527)
T ss_dssp             H-H-HHTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBS--------------------SCHH--HHH-HHHCC
T ss_pred             H-H-HhCCCCCEEEEEeCCCchHHHHHHHcCCeEEEecCceEEEe--------------------cCHH--HHH-HHhCC
Confidence            1 1 22456999999999999999988889999999987 66433                    2221  111 14466


Q ss_pred             CCCcH-----HHHH--HcCccceecCCC-ChHHHHHHHHH
Q 015541          236 RISTP-----SDAL--FAGLGTDYVPSG-NLGSLKEALLA  267 (405)
Q Consensus       236 ~i~~a-----~eA~--~~GLv~~vv~~~-~l~~~~~~l~~  267 (405)
                      .++ .     .+.+  ..|++|.+++++ +..+...++..
T Consensus       219 ~v~-~e~lggae~~~~~~G~vd~vv~d~~~~~~~~~~~Ls  257 (527)
T 1vrg_A          219 EIS-QEDLGGAMVHNQKSGNAHFLADNDEKAMSLVRTLLS  257 (527)
T ss_dssp             CCC-HHHHHBHHHHHHTSCCCSEEESSHHHHHHHHHHHHT
T ss_pred             CCC-ccccccHHHHhhcccceEEEecCHHHHHHHHHHHHH
Confidence            665 3     3333  599999999864 24444444443

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=95.36  E-value=0.18  Score=52.03  Aligned_cols=153  Identities=14%  Similarity=0.108  Sum_probs=92.3

Q ss_pred             EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHH
Q 015541           80 ITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLI  158 (405)
Q Consensus        80 ItLnrp~-~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~  158 (405)
                      |.=|+|. ..-+++.+-.....+.++.+++. ++-+|.|.=.  ..|..|.+-...              ......-+++
T Consensus       334 via~~~~~~~G~~~~~~~~Kaar~i~~a~~~-~~Plv~lvDt--pG~~~G~~~E~~--------------g~~~~~A~~~  396 (527)
T 1vrg_A          334 IVANQPSVLAGVLDIDSSDKAARFIRFLDAF-NIPILTFVDT--PGYLPGVAQEHG--------------GIIRHGAKLL  396 (527)
T ss_dssp             EEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE--CCBCCCHHHHHT--------------THHHHHHHHH
T ss_pred             EEEEcCcccCCCCCHHHHHHHHHHHHHHhhc-CCCeEEEecC--CCCcCchhhHHh--------------HHHHHHHHHH
Confidence            3334444 23479999999999999888664 5566666543  235555432211              1223344677


Q ss_pred             HHHHhCCCcEEEEECCccccccceeccc-----ccEEEEeCCeeeeCccccccccCCccHHHHHhcC-----CChHHHHH
Q 015541          159 CKISEYKKPYISLMDGVTMGFGIGISGH-----GRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG-----PGGGSVGA  228 (405)
Q Consensus       159 ~~i~~~~kPvIa~v~G~a~GgG~~lal~-----~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~-----~G~~~~a~  228 (405)
                      +.+.....|+|++|-|.|.|||. ++++     +|+++|.++++++       ..+.-|+.-.+-|.     .-......
T Consensus       397 ~a~~~~~vP~isvI~g~~~gGg~-~am~~~~~~~d~~~a~p~a~~~-------Vm~pegaa~Il~r~~~~~~~d~~~~~~  468 (527)
T 1vrg_A          397 YAYSEATVPKITVILRKAYGGAY-IAMGSKHLGADMVLAWPSAEIA-------VMGPEGAANIIFKREIEASSNPEETRR  468 (527)
T ss_dssp             HHHHHCCSCEEEEEEEEEEHHHH-HHTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHH
T ss_pred             HHHhcCCCCEEEEEeCCcccHHH-HHhcCCCCCCCEEEEcCCCeEE-------ecCHHHHHHHHhhhhhhcccCHHHHHH
Confidence            78889999999999999988876 4443     7777766666555       44444444433221     11110111


Q ss_pred             HHH--hcCCCCCcHHHHHHcCccceecCCCCh
Q 015541          229 YLG--MTGKRISTPSDALFAGLGTDYVPSGNL  258 (405)
Q Consensus       229 ~l~--ltG~~i~~a~eA~~~GLv~~vv~~~~l  258 (405)
                      ++.  +.-..-+ +..+.+.|+||.|+++.+.
T Consensus       469 ~~~~~y~~~~~~-p~~~~~~g~iD~II~p~~t  499 (527)
T 1vrg_A          469 KLIEEYKQQFAN-PYIAASRGYVDMVIDPRET  499 (527)
T ss_dssp             HHHHHHHHHTSS-HHHHHHTTSSSEECCGGGH
T ss_pred             HHHHHHHHhhCC-HHHHHHcCCCCeeeCHHHH
Confidence            121  1111245 7899999999999987544

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=95.25  E-value=0.097  Score=54.55  Aligned_cols=172  Identities=11%  Similarity=-0.035  Sum_probs=97.3

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (405)
Q Consensus        77 v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (405)
                      |.++-.+.--+.-++.....+.+.++++.+.+. .+-+|.|.-+| +++.     .+ .....  .......+.|    .
T Consensus       108 V~V~a~D~tv~gGS~g~~~~~Ki~Ra~e~A~~~-~lPvI~l~dSg-GArl-----~~-qe~~~--~~l~~~g~if----~  173 (588)
T 3gf3_A          108 VYIVASDNKKMAGAWVPGQAENLIRCSDAAKMM-HLPLIYLLNCS-GVEF-----PN-QDKVY--PNRRGGGTPF----F  173 (588)
T ss_dssp             EEEEEECTTSGGGCBCTTHHHHHHHHHHHHHHH-TCCEEEEECCC-CBCG-----GG-HHHHS--SSTTSTTHHH----H
T ss_pred             EEEEEECCcccCCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEcCC-CcCc-----cc-ccccc--cchhhHHHHH----H
Confidence            444444544456788888899999999888775 35677776554 3443     11 11000  0001111122    2


Q ss_pred             HHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCc--cccccccCCccHHHHHhcCC---ChHHHHHHHH
Q 015541          157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMP--ENGIGLFPDVGFSYIAAKGP---GGGSVGAYLG  231 (405)
Q Consensus       157 l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~P--E~~iGl~P~~G~~~~L~r~~---G~~~~a~~l~  231 (405)
                      .+..+.....|+|++|-|.|.|||.-.++.+|++++.+++.+.+-  .+--|+-|. | . +.+.-+   ... .+-+-.
T Consensus       174 ~~~~ls~~~iP~Isvv~Gp~~gGgAy~a~~~~vim~~~~a~i~~aGP~vI~~~~p~-g-~-~~~~~~~~~~~~-~~ge~~  249 (588)
T 3gf3_A          174 RNSELNQLGIPVIVGIYGTNPAGGGYHSISPTILIAHQDANMAVGGAGILSGMNPK-G-Y-IDDEAAEQIIAA-QIENSK  249 (588)
T ss_dssp             HHHHHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESSCCC------------------CHHHHHH-HHHHHH
T ss_pred             HHHHHhcCCCCEEEEEeCCCCchhhhHhhCCeEEEEECCcEEEecChhhhcccCcc-c-c-ccccchhhhhhh-hccccc
Confidence            234456678999999999999998866888888888888887773  332121110 0 0 111100   001 122212


Q ss_pred             hcCCCCCcHHHHH--HcCccceecCCCC-hHHHHHHHHH
Q 015541          232 MTGKRISTPSDAL--FAGLGTDYVPSGN-LGSLKEALLA  267 (405)
Q Consensus       232 ltG~~i~~a~eA~--~~GLv~~vv~~~~-l~~~~~~l~~  267 (405)
                      .|.+.+. +.+.+  ..|++|+++++|+ ..+.++++..
T Consensus       250 vs~eeLG-Ga~~h~~~sGv~d~~a~de~~al~~~r~~ls  287 (588)
T 3gf3_A          250 LKVPAPG-SVPIHYDETGFFREVYQNDLGVIDGIKKYIS  287 (588)
T ss_dssp             TTCCCTT-BHHHHTTTSCCSCEEESSHHHHHHHHHHHHH
T ss_pred             cChhhcc-chhhhccccccceEEeCCHHHHHHHHHHHHH
Confidence            5778887 67777  5999999998753 3444444444

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=94.91  E-value=0.18  Score=52.25  Aligned_cols=157  Identities=13%  Similarity=0.145  Sum_probs=94.4

Q ss_pred             EEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHH
Q 015541           77 VAVITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEY  155 (405)
Q Consensus        77 v~~ItLnrp~-~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  155 (405)
                      |++|- |+|. ..-+++.+-.....+.++.+++. ++-+|.|-=.  ..|..|.+-.+-              ...+..-
T Consensus       349 Vgvia-n~~~~~~G~l~~~~a~Kaar~i~~a~~~-~iPlv~lvDt--~Gf~~G~~~E~~--------------Gi~~~ga  410 (548)
T 2bzr_A          349 VGIVA-NQPTHFAGCLDINASEKAARFVRTCDCF-NIPIVMLVDV--PGFLPGTDQEYN--------------GIIRRGA  410 (548)
T ss_dssp             EEEEE-ECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE--CCBCCCHHHHHT--------------THHHHHH
T ss_pred             EEEEE-ECCcccCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeec--cCCCCChHHHHh--------------hHHHHHH
Confidence            44343 4444 33579999999999999988764 5566666543  236666543211              1223345


Q ss_pred             HHHHHHHhCCCcEEEEECCccccccceec----ccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCC---------
Q 015541          156 SLICKISEYKKPYISLMDGVTMGFGIGIS----GHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG---------  222 (405)
Q Consensus       156 ~l~~~i~~~~kPvIa~v~G~a~GgG~~la----l~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G---------  222 (405)
                      .+++.+.+...|+|+.|-|.+.|||.--.    +.+|+++|.++++++.       ...-|+.-.+-|.--         
T Consensus       411 ~~l~a~~~~~VP~isvI~g~~~Ggg~~am~~~~~~~d~~~awp~a~i~V-------mgpegaa~Il~r~~~~~~~~~g~~  483 (548)
T 2bzr_A          411 KLLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAV-------MGASGAVGFVYRQQLAEAAANGED  483 (548)
T ss_dssp             HHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTCCC----------
T ss_pred             HHHHHHhCCCCCEEEEEeCCcchHHHHHhccccCCCCEEEEcCCCEEEe-------cCHHHHHHHHhhhHHhhhhccccc
Confidence            67778889999999999999988876332    2378877777666654       444444444433210         


Q ss_pred             hHHHHHHHHh--cCCCCCcHHHHHHcCccceecCCCChH
Q 015541          223 GGSVGAYLGM--TGKRISTPSDALFAGLGTDYVPSGNLG  259 (405)
Q Consensus       223 ~~~~a~~l~l--tG~~i~~a~eA~~~GLv~~vv~~~~l~  259 (405)
                      .......+.-  .-..-+ +.++.+.|+||.|+++.+..
T Consensus       484 ~~~~~~~~~~~y~~~~~~-p~~~a~~g~iD~II~p~~tR  521 (548)
T 2bzr_A          484 IDKLRLRLQQEYEDTLVN-PYVAAERGYVGAVIPPSHTR  521 (548)
T ss_dssp             CHHHHHHHHHHHHHHHSB-SHHHHHTTSSSEECCGGGHH
T ss_pred             HHHHHHHHHHHHHHhhCC-HHHHHhcCCCceeeCHHHHH
Confidence            0000111111  001133 67899999999999975543

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=94.85  E-value=0.22  Score=51.32  Aligned_cols=154  Identities=13%  Similarity=0.089  Sum_probs=93.2

Q ss_pred             EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHH
Q 015541           80 ITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLI  158 (405)
Q Consensus        80 ItLnrp~-~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~  158 (405)
                      |.=|+|. ..-+++.+-.....+.++.+++. ++-+|.|.=.  ..|..|.+-..              ....+..-+++
T Consensus       330 vian~~~~~~G~~~~~~a~Kaar~i~~~~~~-~iPlv~lvDt--pGf~~G~~~E~--------------~Gi~~~~A~~l  392 (523)
T 1on3_A          330 IVANQPSVMSGCLDINASDKAAEFVNFCDSF-NIPLVQLVDV--PGFLPGVQQEY--------------GGIIRHGAKML  392 (523)
T ss_dssp             EEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE--CCBCCCHHHHH--------------TTHHHHHHHHH
T ss_pred             EEEecCCccCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEeC--CCcCcchHHHH--------------hhHHHHHHHHH
Confidence            3334554 23479999999999999888764 5566666543  24666654321              11234455777


Q ss_pred             HHHHhCCCcEEEEECCccccccceeccc----ccEEEEeCCeeeeCccccccccCCccHHHHHhcC-----CChHHHHHH
Q 015541          159 CKISEYKKPYISLMDGVTMGFGIGISGH----GRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG-----PGGGSVGAY  229 (405)
Q Consensus       159 ~~i~~~~kPvIa~v~G~a~GgG~~lal~----~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~-----~G~~~~a~~  229 (405)
                      +.+.+...|+|+.|-|.+.|||.--...    +|+++|.++++++       ..+.-|+.-.+-|.     .-......+
T Consensus       393 ~a~a~~~vP~itvI~g~~~Ggg~~am~~~~~~~d~~~a~p~a~~~-------Vm~pegaa~Il~r~~~~~~~d~~~~~~~  465 (523)
T 1on3_A          393 YAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIA-------VMGAEGAANVIFRKEIKAADDPDAMRAE  465 (523)
T ss_dssp             HHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHH
T ss_pred             HHHhcCCCCEEEEEeCCcccHHHHHhcccCCCCCEEEEcCCCeEE-------ecCHHHHHHHHhhhhhhcccCHHHHHHH
Confidence            7889999999999999998887633323    6776666665554       44444444443222     110000111


Q ss_pred             HHh--cCCCCCcHHHHHHcCccceecCCCCh
Q 015541          230 LGM--TGKRISTPSDALFAGLGTDYVPSGNL  258 (405)
Q Consensus       230 l~l--tG~~i~~a~eA~~~GLv~~vv~~~~l  258 (405)
                      +.-  .-..-+ +..+.+.|+||.|+++.+.
T Consensus       466 ~~~~y~~~~~~-p~~~a~~g~iD~II~p~~t  495 (523)
T 1on3_A          466 KIEEYQNAFNT-PYVAAARGQVDDVIDPADT  495 (523)
T ss_dssp             HHHHHHHHHSS-HHHHHHTTSSSEECCGGGH
T ss_pred             HHHHHHHhhCC-HHHHHhcCCCCEeeCHHHH
Confidence            110  001144 7899999999999987544

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=94.02  E-value=0.37  Score=49.55  Aligned_cols=151  Identities=13%  Similarity=0.170  Sum_probs=94.8

Q ss_pred             EEEcCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHH
Q 015541           80 ITLDRPKA-LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLI  158 (405)
Q Consensus        80 ItLnrp~~-~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~  158 (405)
                      |.=|+|.. .-+++.+..+...+.++.+++. ++-+|.|.=.  ..|..|.+-.+              ....+..-+++
T Consensus       342 vian~~~~~~G~l~~~~a~Kaarfi~lcd~~-~iPlv~lvDt--pGf~~G~~~E~--------------~Gi~~~gAk~l  404 (531)
T 3n6r_B          342 VVANQPLVLAGCLDIDSSRKAARFVRFCDAF-EIPLLTLIDV--PGFLPGTSQEY--------------GGVIKHGAKLL  404 (531)
T ss_dssp             EEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE--CSBCCSHHHHH--------------TTHHHHHHHHH
T ss_pred             EEEecccccCCCCCHHHHHHHHHHHHHhhcc-CCCEEEEeCC--CCCCCCHHHHH--------------hhHHHHHHHHH
Confidence            34455542 3479999999999999888764 4666666543  23555543221              11345556788


Q ss_pred             HHHHhCCCcEEEEECCccccccceeccc-----ccEEEEeCCeeeeCccccccccCCccHHHHHhcC-CC----hHH-HH
Q 015541          159 CKISEYKKPYISLMDGVTMGFGIGISGH-----GRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG-PG----GGS-VG  227 (405)
Q Consensus       159 ~~i~~~~kPvIa~v~G~a~GgG~~lal~-----~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~-~G----~~~-~a  227 (405)
                      +.+.+...|+|+.|-|.+.|||. ++++     +|+++|.++++++.       .+.-|+.-.+-|- +-    ... ..
T Consensus       405 ~a~a~a~VP~itvI~g~~~Ggg~-~am~~~~~~~d~~~awp~A~i~V-------m~pegaa~Il~r~~~~~~~~~~~~~~  476 (531)
T 3n6r_B          405 YAYGEATVPMVTVITRKAYGGAY-VVMSSKHLRADFNYAWPTAEVAV-------MGAKGATEIIHRGDLGDPEKIAQHTA  476 (531)
T ss_dssp             HHHHHCCSCEEEEEEEEEEHHHH-HHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHCCTTTTSTTHHHHHHH
T ss_pred             HHHHhCCCCEEEEEcCCccchhh-hhccCccCCCCeEEEcCCceEec-------CCHHHHHHHHhcccccchhHHHHHHH
Confidence            89999999999999999988876 4444     78877776666554       4434444333221 10    000 11


Q ss_pred             HHHHhcCCCCCcHHHHHHcCccceecCCCChH
Q 015541          228 AYLGMTGKRISTPSDALFAGLGTDYVPSGNLG  259 (405)
Q Consensus       228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~  259 (405)
                      .|--   +.-+ +..|...|++|.|+++.+.-
T Consensus       477 ~y~~---~~~~-p~~aa~~~~vD~vIdP~~TR  504 (531)
T 3n6r_B          477 DYEE---RFAN-PFVASERGFVDEVIQPRSTR  504 (531)
T ss_dssp             HHHH---HHSS-SHHHHHHTSSSEECCGGGHH
T ss_pred             HHHH---HhcC-HHHHHhcCccCcccCHHHHH
Confidence            1111   1234 67788999999999987653

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=93.92  E-value=0.47  Score=48.82  Aligned_cols=154  Identities=14%  Similarity=0.162  Sum_probs=96.9

Q ss_pred             EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHH
Q 015541           80 ITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLI  158 (405)
Q Consensus        80 ItLnrp~-~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~  158 (405)
                      |.=|+|. ..-+++.+......+.++.+++. ++-+|.|.=..  .|-.|.+-.+              ...++..-+++
T Consensus       336 vian~~~~~~G~l~~~~a~Kaarfi~~c~~~-~iPlv~lvDtp--Gf~~G~~~E~--------------~gi~~~~Ak~l  398 (530)
T 3iav_A          336 IVANQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDVP--GFLPGVDQEH--------------DGIIRRGAKLI  398 (530)
T ss_dssp             EEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC--CBCCCHHHHH--------------TTHHHHHHHHH
T ss_pred             EEEecCcccCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeeCC--CCCccHHHHH--------------hhHHHHHHHHH
Confidence            4445554 23579999999999999888775 46677665442  3666655221              12455666888


Q ss_pred             HHHHhCCCcEEEEECCccccccceeccc-----ccEEEEeCCeeeeCccccccccCCccHHHHHhcC-CC-----hHHHH
Q 015541          159 CKISEYKKPYISLMDGVTMGFGIGISGH-----GRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG-PG-----GGSVG  227 (405)
Q Consensus       159 ~~i~~~~kPvIa~v~G~a~GgG~~lal~-----~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~-~G-----~~~~a  227 (405)
                      +.+.....|+|+.|-|.+.|||. ++++     +|+++|.++++++.       .+.-|+.-.+-|. +-     ....-
T Consensus       399 ~a~a~a~vP~itvI~g~~~GGa~-~am~~~~~~~d~~~awp~a~~~V-------m~~egaa~il~r~~~~~~~~d~~~~~  470 (530)
T 3iav_A          399 FAYAEATVPLITVITRKAFGGAY-VVMGSKHLGADLNLAWPTAQIAV-------MGAQGAVNILHRRTIADAGDDAEATR  470 (530)
T ss_dssp             HHHHHCCSCEEEEEEEEEEHHHH-HHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTSTTTSTTCTTCHHHH
T ss_pred             HHHHhCCCCEEEEEeCCcchHHH-HHhcCCCCCCCEEEEcCCceEec-------CCHHHHHHHHhhhhhhhcccCHHHHH
Confidence            89999999999999999998765 5544     68877777766654       3334444333222 10     00011


Q ss_pred             HHHH--hcCCCCCcHHHHHHcCccceecCCCChH
Q 015541          228 AYLG--MTGKRISTPSDALFAGLGTDYVPSGNLG  259 (405)
Q Consensus       228 ~~l~--ltG~~i~~a~eA~~~GLv~~vv~~~~l~  259 (405)
                      .++.  +.-+.-+ +..|...|++|.|+++.+.-
T Consensus       471 ~~~~~~y~~~~~~-p~~aa~~~~vD~VIdP~~TR  503 (530)
T 3iav_A          471 ARLIQEYEDALLN-PYTAAERGYVDAVIMPSDTR  503 (530)
T ss_dssp             HHHHHHHHHHHSS-SHHHHHTTSSSEECCGGGHH
T ss_pred             HHHHHHHHHhcCC-HHHHHhcCCCCcccCHHHHH
Confidence            1111  1111135 77888999999999987653

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=91.71  E-value=2.3  Score=44.32  Aligned_cols=145  Identities=14%  Similarity=0.062  Sum_probs=93.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCc
Q 015541           88 LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP  167 (405)
Q Consensus        88 ~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP  167 (405)
                      .-.++.+-.....+.++.+++ .++-+|.|.=.  ..|..|.+-.+              ....+..-++++.+..+..|
T Consensus       384 ~G~l~~~~a~Kaarfi~~c~~-~~iPlv~lvDt--pGf~~G~~~E~--------------~Gi~~~gA~~~~a~a~a~vP  446 (587)
T 1pix_A          384 GGKLYRQGLVKMNEFVTLCAR-DRLPIVWIQDT--TGIDVGNDAEK--------------AELLGLGQSLIYSIQTSHIP  446 (587)
T ss_dssp             TTEECHHHHHHHHHHHHHHHH-TTCCEEEEECC--CEECCSHHHHH--------------TTHHHHHHHHHHHHHTCCCC
T ss_pred             CCCcCHHHHHHHHHHHHHhhc-CCCCeEEEecC--CCCCCcHHHHH--------------HHHHHHHHHHHHHHHhCCCC
Confidence            356999999999999987766 45677777644  35766654221              11344556788899999999


Q ss_pred             EEEEECCccccccceeccc-----c--cEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH------------HHHH
Q 015541          168 YISLMDGVTMGFGIGISGH-----G--RYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG------------SVGA  228 (405)
Q Consensus       168 vIa~v~G~a~GgG~~lal~-----~--D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~------------~~a~  228 (405)
                      +|+.|-|.+.|||. ++++     +  |+++|.++++++       +.+.-|+.-.+-|..-..            ..-.
T Consensus       447 ~itvI~g~~~Ggg~-~am~~~~~~~~~d~~~a~p~A~~~-------Vm~pegaa~Il~r~~~~~~~~~g~~~~~~~~~~~  518 (587)
T 1pix_A          447 QFEITLRKGTAAAH-YVLGGPQGNDTNAFSIGTAATEIA-------VMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMN  518 (587)
T ss_dssp             EEEEECSEEETTHH-HHTTCTTCTTTEEEEEECTTCEEE-------SSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             EEEEEcCCCccHHH-HHhcCcccCcccceeeeccCCeEe-------cCCHHHHHHHHHhhhhhhhhhcCCChHHHHHHHH
Confidence            99999999988874 5555     4  887776666665       444444443333221000            0001


Q ss_pred             HHH--hcCCCCCcHHHHHHcCccceecCCCChH
Q 015541          229 YLG--MTGKRISTPSDALFAGLGTDYVPSGNLG  259 (405)
Q Consensus       229 ~l~--ltG~~i~~a~eA~~~GLv~~vv~~~~l~  259 (405)
                      .+.  +. +..+ +..|.+.|+||.|+++.+..
T Consensus       519 ~~~~~y~-~~~~-p~~aa~~g~iD~VI~p~~tR  549 (587)
T 1pix_A          519 NLIQAFY-TKSR-PKVCAELGLVDEIVDMNKIR  549 (587)
T ss_dssp             HHHHHHH-HTTS-HHHHHHHTSSSEECCTTTHH
T ss_pred             HHHHHHH-HhCC-HHHHHhcCCCccccCHHHHH
Confidence            010  11 1466 89999999999999987653

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=90.95  E-value=0.19  Score=54.00  Aligned_cols=37  Identities=19%  Similarity=0.245  Sum_probs=32.8

Q ss_pred             CCCcEEEEECCccccccceecccccEEEEeCCeeeeC
Q 015541          164 YKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM  200 (405)
Q Consensus       164 ~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~  200 (405)
                      ...|+|++|.|.|.|||.-++..||++|+.+++.+.+
T Consensus       258 ~~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~a~i~l  294 (793)
T 2x24_A          258 DEIVTISMVSCRALGIGAYLVRLGQRVIQVENSHIIL  294 (793)
T ss_dssp             HHSCEEEEECSEEETHHHHHHHHTCCEEEETTCEEES
T ss_pred             CCCCEEEEEecCCchHHHHHHhhCCeEEEeccccEEe
Confidence            3699999999999999999999999999998865443

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=89.18  E-value=4.5  Score=41.74  Aligned_cols=149  Identities=9%  Similarity=0.094  Sum_probs=92.3

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (405)
Q Consensus        77 v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (405)
                      |++|--|     -+++.+..+...+.++.+++. ++-+|.|.=..  .|..|.+-.+              ....+..-+
T Consensus       359 Vgvian~-----G~l~~~~a~Kaarfi~~c~~~-~iPlv~lvDtp--Gf~~G~~~E~--------------~Gi~~~gAk  416 (555)
T 3u9r_B          359 IAILANN-----GILFAEAAQKGAHFIELACQR-GIPLLFLQNIT--GFMVGQKYEA--------------GGIAKHGAK  416 (555)
T ss_dssp             EEEEEEC-----SSBCHHHHHHHHHHHHHHHHH-TCCEEEEEEEC--CBCCSHHHHH--------------TTHHHHHHH
T ss_pred             EEEEEeC-----CccCHHHHHHHHHHHHHHhcC-CCCEEEEecCc--CCCCCHHHHH--------------HHHHHHHHH
Confidence            5555554     689999999999999988764 46677776552  3665544221              112344567


Q ss_pred             HHHHHHhCCCcEEEEECCccccccceeccc-----ccEEEEeCCeeeeCccccccccCCccHHHHHhcC-------CC--
Q 015541          157 LICKISEYKKPYISLMDGVTMGFGIGISGH-----GRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG-------PG--  222 (405)
Q Consensus       157 l~~~i~~~~kPvIa~v~G~a~GgG~~lal~-----~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~-------~G--  222 (405)
                      +++.+..+..|+|+.|-|.+.|||. ++++     +|+++|.++++++.       ...-|+...|-..       .|  
T Consensus       417 ~~~a~~~a~vP~itvi~g~~~Ggg~-~am~~~~~~~d~~~a~p~A~i~V-------mgpegaa~il~~~~~~~~~~~g~~  488 (555)
T 3u9r_B          417 LVTAVACARVPKFTVLIGGSFGAGN-YGMCGRAYDPRFLWMWPNARIGV-------MGGEQAAGVLAQVKREQAERAGQQ  488 (555)
T ss_dssp             HHHHHHHCCSCEEEEEEEEEETTHH-HHTTCGGGCCSEEEECTTCEEES-------SCHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHhCCCCEEEEEeCCccchhh-HhhcCccCCCCeEEEcCCcEEEc-------CCHHHHHHHHHHHHHHHHHhccCC
Confidence            8888999999999999999888764 4433     68888776666664       3334444333210       00  


Q ss_pred             --hH-------HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChH
Q 015541          223 --GG-------SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLG  259 (405)
Q Consensus       223 --~~-------~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~  259 (405)
                        ..       .+..++-   +..+ +..|-..|++|.|+++.+.-
T Consensus       489 ~~~~~~~~~~~~~~~~y~---~~~~-p~~aa~r~~vD~vIdP~~TR  530 (555)
T 3u9r_B          489 LGVEEEAKIKAPILEQYE---HQGH-PYYSSARLWDDGVIDPAQTR  530 (555)
T ss_dssp             CCHHHHHHHHHHHHHHHH---HHHS-HHHHHHTTSSSCBCCGGGHH
T ss_pred             CCcchHHHHHHHHHHHHH---HhCC-HHHHhhccccCcccChHHHH
Confidence              00       0011111   1134 66777889999999886543

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=88.68  E-value=2  Score=44.60  Aligned_cols=147  Identities=15%  Similarity=0.148  Sum_probs=93.3

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcE
Q 015541           89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPY  168 (405)
Q Consensus        89 Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPv  168 (405)
                      -+++.+-.+...+.++.+++. ++-+|.|.=.  ..|..|.+-.+              ....+..-++++.+.++.+|.
T Consensus       387 G~l~~~~a~Kaarfi~lcd~f-~iPlv~lvDt--pGf~~G~~aE~--------------~Gi~~~gAk~l~a~a~a~VP~  449 (588)
T 3gf3_A          387 GKLYRQGLIKMNEFVTLCARD-RIPLIWLQDT--TGIDVGDEAEK--------------AELLGLGQSLIYSIENSKLPS  449 (588)
T ss_dssp             TEECHHHHHHHHHHHHHHHHT-TCCEEEEECC--CEECCSHHHHH--------------TTHHHHHHHHHHHHHHHCSCE
T ss_pred             CCcCHHHHHHHHHHHHHhhhc-CCCeEEEecC--CCCCCCHHHHH--------------HHHHHHHHHHHHHHHhCCCCE
Confidence            368999999999999988874 5677777644  35766654321              113455567888999999999


Q ss_pred             EEEECCccccccceecccc-------cEEEEeCCeeeeCccccccccCCccHHHHHhcC-------CCh------H---H
Q 015541          169 ISLMDGVTMGFGIGISGHG-------RYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG-------PGG------G---S  225 (405)
Q Consensus       169 Ia~v~G~a~GgG~~lal~~-------D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~-------~G~------~---~  225 (405)
                      |+.|-|.+.|||. +++++       |+++|.++++++       ..++-|+.-.+-|.       .|.      .   .
T Consensus       450 itvI~g~~~Ggg~-~am~~~~~~~~~~~~~awp~A~~s-------Vm~pEgaa~Il~~~~~~~~~~~~~~~~~~~~~~~~  521 (588)
T 3gf3_A          450 LEITIRKASAAAH-YVLGGPQGNNTNVFSIGTGACEYY-------VMPGETAANAMYSRKLVKAKKAGEDLQPIIGKMND  521 (588)
T ss_dssp             EEEESSEEETTHH-HHTTCTTCTTTEEEEEECTTCEEE-------SSCHHHHHHHHHHHHHHHC-------CHHHHHHHH
T ss_pred             EEEEcCCccHHHH-HHhcccccCCccceEEECCCceEE-------eCCHHHHHHHHhhhHHhhhhccccccchHHHHHHH
Confidence            9999999988765 55543       266666666555       44444444333221       110      0   0


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHH
Q 015541          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEA  264 (405)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~  264 (405)
                      +..++-   +..+ +.-|-..|++|.|+++.+.-.....
T Consensus       522 ~~~~y~---~~~~-p~~aA~r~~vD~VIdP~~TR~~l~~  556 (588)
T 3gf3_A          522 MIQMYT---DKSR-PKYCTEKGMVDEIVDMTEVRPYIQA  556 (588)
T ss_dssp             HHHHHH---HTTS-HHHHHHTTSSSEECCGGGHHHHHHH
T ss_pred             HHHHHH---HhCC-HHHHHhcCCCCeeeCHHHHHHHHHH
Confidence            111111   1356 8889999999999998776444333

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=86.76  E-value=0.25  Score=52.58  Aligned_cols=34  Identities=21%  Similarity=0.173  Sum_probs=31.3

Q ss_pred             CCCcEEEEECCccccccceecccccEEEEeCCee
Q 015541          164 YKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTL  197 (405)
Q Consensus       164 ~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~  197 (405)
                      -..|+|++|.|.|.|||.-+...||++|+.+++.
T Consensus       245 ~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~s~  278 (758)
T 3k8x_A          245 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQP  278 (758)
T ss_dssp             TTSCEEEEECSCEETHHHHHHHHTCEEEEETTCC
T ss_pred             cCCCEEEEEccCCchHHHHHHhhCCEEEEECCce
Confidence            4679999999999999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	405
d1mj3a_	260	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat	1e-25
d1uiya_	253	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {The	2e-17
d1dcia_	275	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	1e-16
d1hzda_	266	c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [T	4e-16
d1q52a_	297	c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacter	2e-15
d1pjha_	266	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	6e-15
d1nzya_	269	c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Ps	7e-15
d2f6qa1	245	c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-C	4e-13
d1wdka4	310	c.14.1.3 (A:1-310) Fatty oxidation complex alpha s	2e-12
d2a7ka1	230	c.14.1.3 (A:1-230) Carbapenem biosynthes protein C	8e-11
d1sg4a1	249	c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-d	2e-09
d1wz8a1	263	c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TT	3e-09
d1szoa_	249	c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus	9e-09
d1ef8a_	261	c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Esc	2e-08
d2fw2a1	258	c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Hum	5e-08

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  102 bits (255), Expect = 1e-25
 Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 9/164 (5%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           + V +I L+RPKALNA+   +  +    L+ +E DP V  +++ G            +  
Sbjct: 15  SSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQ 74

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
               Q   +   +        S    I+  KKP I+ ++G  +G G  ++         E
Sbjct: 75  NRTFQDCYSGKFL--------SHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGE 126

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRIS 238
           K     PE  +G  P  G +    +   G S+   + +TG RIS
Sbjct: 127 KAQFGQPEILLGTIPGAGGTQRLTRAV-GKSLAMEMVLTGDRIS 169

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Length = 253

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

 Score = 79.4 bits (194), Expect = 2e-17
 Identities = 35/173 (20%), Positives = 68/173 (39%), Gaps = 6/173 (3%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
             VAV+ L+ P+  N ++ +M +     LD+ E+DP V+ V++ G G             
Sbjct: 7   GHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAF-- 64

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             E   +       +   +   L  ++  Y KP ++ ++G  +  G G++      ++ E
Sbjct: 65  -LERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDE 123

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAG 247
           +  L   E  IG    +    +      G      L +TG+ +    +A   G
Sbjct: 124 EARLGYTEVKIGFVAALVSVILVR--AVGEKAAKDLLLTGRLVE-AREAKALG 173

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 275

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 77.5 bits (189), Expect = 1e-16
 Identities = 33/163 (20%), Positives = 64/163 (39%), Gaps = 7/163 (4%)

Query: 66  EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAF 125
           E ++       V  + L+RP+  NAMN     +      +   D   + V++ G+  + F
Sbjct: 3   ESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGA-GKMF 61

Query: 126 CAGMDIKGVVAEIQKDRNTP------LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGF 179
            +G+D+  + ++I +            +  + +        I +  KP I+ + G  +G 
Sbjct: 62  TSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGG 121

Query: 180 GIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPG 222
           G+ +      R  T+     + E  +GL  DVG      K  G
Sbjct: 122 GVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIG 164

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (184), Expect = 4e-16
 Identities = 29/164 (17%), Positives = 68/164 (41%), Gaps = 6/164 (3%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
            G+ V+ ++R    N+++ ++       +D  +SD +V+ ++I    P  FCAG D+K  
Sbjct: 14  RGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKER 73

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
                 +          +   ++I  I+    P I+ +DG+ +G G+ ++     R+   
Sbjct: 74  AKMSSSEVGPF-----VSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAAS 128

Query: 195 KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRIS 238
              + + E  + + P  G +    +  G       +  + + + 
Sbjct: 129 SAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELI-FSARVLD 171

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 297

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 74.0 bits (180), Expect = 2e-15
 Identities = 22/130 (16%), Positives = 35/130 (26%), Gaps = 12/130 (9%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +    +  +RP+  NA       +    LD     P V  VL+ G+GP     G      
Sbjct: 28  DATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSG 87

Query: 135 ------------VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIG 182
                        A         +          +   I    K  I L++G   G G  
Sbjct: 88  GDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHS 147

Query: 183 ISGHGRYRIV 192
           +       + 
Sbjct: 148 LHVVCDLTLA 157

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.0 bits (175), Expect = 6e-15
 Identities = 31/218 (14%), Positives = 61/218 (27%), Gaps = 15/218 (6%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
               +I L  P  LNA+  +  I     L+  + +  V   +I+ S  R F +G D KG+
Sbjct: 13  GPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSS-GRFFSSGADFKGI 71

Query: 135 VAEIQKDRNTP------LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGR 188
                 D N         V         +     ++ K  I  ++G  +G    +     
Sbjct: 72  AKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCD 131

Query: 189 YRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGL 248
                   +  +           G + ++     G +      M  K           G 
Sbjct: 132 IVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFK-YDIMCENGF 190

Query: 249 GTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYS 286
            +             +  A  F+    +++   +    
Sbjct: 191 ISKNFNM-------PSSNAEAFNAKVLEELREKVKGLY 221

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} Length = 269

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

 Score = 72.1 bits (175), Expect = 7e-15
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 1/119 (0%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +GVA IT+  P+  NA+++    +    L+  E D  V  V+I      AFCAG  ++ +
Sbjct: 11  DGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMI-TGAEDAFCAGFYLREI 69

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
             +                 + +I KI   K+P ++ ++GV  G G+GIS      I  
Sbjct: 70  PLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICA 128

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} Length = 245

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (160), Expect = 4e-13
 Identities = 25/141 (17%), Positives = 53/141 (37%), Gaps = 3/141 (2%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGV 134
           +G+  I  +RPK  NA+N +M  +    L     D  +    +       + +G D+   
Sbjct: 11  DGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSIIT--VLTGNGDYYSSGNDLTN- 67

Query: 135 VAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE 194
             +I                   +    ++ KP I++++G  +G  + + G       ++
Sbjct: 68  FTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASD 127

Query: 195 KTLLAMPENGIGLFPDVGFSY 215
           +     P + +G  P+   SY
Sbjct: 128 RATFHTPFSHLGQSPEGCSSY 148

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 310

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 65.1 bits (157), Expect = 2e-12
 Identities = 35/192 (18%), Positives = 74/192 (38%), Gaps = 6/192 (3%)

Query: 75  NGVAVITLD-RPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKG 133
           +G+  +  D + +++N  N     + +  +D  ++D  VK V++  SG   F  G DI  
Sbjct: 15  SGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIV-SSGKDVFIVGADITE 73

Query: 134 VVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
            V   +       +         +     +   P ++ ++G+ +G G+ +     +R++ 
Sbjct: 74  FVENFKLPDAE--LIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMA 131

Query: 194 EKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYV 253
           +   + +PE  +G++P      +      G         +GK      DAL        V
Sbjct: 132 DSAKIGLPEVKLGIYPGF-GGTVRLPRLIGVDNAVEWIASGKENR-AEDALKVSAVDAVV 189

Query: 254 PSGNLGSLKEAL 265
            +  LG+    L
Sbjct: 190 TADKLGAAALDL 201

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} Length = 230

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

 Score = 59.5 bits (142), Expect = 8e-11
 Identities = 18/55 (32%), Positives = 27/55 (49%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGM 129
           + V VITLD P   N  +  ++   K  L    +D  V+ V++ G   R+F AG 
Sbjct: 8   DEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGG 62

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 2e-09
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMD 130
            GVAV+    P  +N+++L+   +    L++ E+D   + V++    P  F AG+D
Sbjct: 12  AGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLD 66

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} Length = 263

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

 Score = 55.2 bits (131), Expect = 3e-09
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 59  MAAAGAE-EFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLI 117
           +A+  A    +       GV  IT  R + LNAM   +         + E+   V+ VL+
Sbjct: 1   LASLEARYPGLAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLL 59

Query: 118 EGSGPRAFCAGM 129
            G G      G 
Sbjct: 60  RGEGGVFSAGGS 71

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 53.6 bits (127), Expect = 9e-09
 Identities = 5/40 (12%), Positives = 10/40 (25%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKC 114
            GV ++T+               +      +   D   K 
Sbjct: 21  GGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKV 60

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} Length = 261

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

 Score = 52.5 bits (124), Expect = 2e-08
 Identities = 17/58 (29%), Positives = 24/58 (41%)

Query: 75  NGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIK 132
           N VAVI  +  + LNA++          L +         +L   SG + F AG DI 
Sbjct: 12  NKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPEIRCIILRAPSGSKVFSAGHDIH 69

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 5e-08
 Identities = 32/149 (21%), Positives = 51/149 (34%), Gaps = 4/149 (2%)

Query: 75  NGVAVITL-DRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKG 133
           +G   I L  R    NA+N ++  +  + L+   +D   K VL   +G    C       
Sbjct: 10  DGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADD-SKLVLFSAAGSVFCCGLDFGYF 68

Query: 134 VVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT 193
           V           L  ++     + +    ++KKP +  ++G  +G G  I          
Sbjct: 69  VRHLRNDRNTASL--EMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWAN 126

Query: 194 EKTLLAMPENGIGLFPDVGFSYIAAKGPG 222
           EK     P    G  PD   S    K  G
Sbjct: 127 EKAWFQTPYTTFGQSPDGCSSITFPKMMG 155

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	405
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	100.0
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	100.0
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	100.0
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	100.0
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	100.0
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	100.0
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	100.0
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	100.0
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	100.0
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	100.0
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	100.0
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	97.66
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	97.6
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	97.48
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	97.46
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	97.28
d2f9yb1	263	Acetyl-coenzyme A carboxylase carboxyl transferase	97.06
d1on3a1	253	Methylmalonyl-CoA carboxyltransferase (transcarbox	97.05
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	96.91
d1vrga1	251	Propionyl-CoA carboxylase complex B subunit, PccB	96.71
d1xnya1	258	Propionyl-CoA carboxylase complex B subunit, PccB	96.55
d1pixa2	287	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	96.42
d2a7sa1	258	Propionyl-CoA carboxylase complex B subunit, PccB	96.31
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	96.1
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	95.02
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	94.92
d1uyra1	333	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	94.38
d1uyra2	404	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	93.98
d1pixa3	299	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	93.92
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	91.02

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.6e-51  Score=390.30  Aligned_cols=249  Identities=23%  Similarity=0.252  Sum_probs=214.3

Q ss_pred             CCccEEEEEe--eCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhC
Q 015541           64 AEEFVKGNVH--PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKD  141 (405)
Q Consensus        64 ~~~~i~~~~~--~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~  141 (405)
                      .|++|++++.  +++|++||||||+++|+||.+|+.+|.++++.+++|+++++|||+|.| ++||+|+|++++...    
T Consensus         2 ~~~~i~~e~~g~~~~I~~itlnrP~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~----   76 (260)
T d1mj3a_           2 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGE-KAFAAGADIKEMQNR----   76 (260)
T ss_dssp             CCSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCS-SEEECCBCHHHHTTC----
T ss_pred             CCeEEEEEEEcCCCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCcceEEEeccc-ccccccchhhhhhcc----
Confidence            4788999974  358999999999999999999999999999999999999999999986 899999999987541    


Q ss_pred             CCCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCC
Q 015541          142 RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGP  221 (405)
Q Consensus       142 ~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~  221 (405)
                         .....+....+.++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++
T Consensus        77 ---~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~i  153 (260)
T d1mj3a_          77 ---TFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAV  153 (260)
T ss_dssp             ---CHHHHHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHH
T ss_pred             ---chhhhhHHHHHHHHHHhccCCCeEEEEEcCeEeHHHHHHHHHCCEEEEcCCCEEECchhccCcCCcccHHHHHHHHh
Confidence               12233444555677789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhH
Q 015541          222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLL  299 (405)
Q Consensus       222 G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~  299 (405)
                      |.+ .+++|++||++++ |+||+++|||+++++.+++.+.+.+++.......|.  ..+|+.++...... ....++.+.
T Consensus       154 g~~-~a~~l~l~g~~~~-a~eA~~~Glv~~v~~~~~~~~~a~~~a~~i~~~~~~a~~~~K~~l~~~~~~~-l~~~l~~E~  230 (260)
T d1mj3a_         154 GKS-LAMEMVLTGDRIS-AQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAKESVNAAFEMT-LTEGNKLEK  230 (260)
T ss_dssp             CHH-HHHHHHHHCCCEE-HHHHHHHTSCSEEECTTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHGGGSSC-HHHHHHHHH
T ss_pred             CHH-HHHHHHHcCcccC-chhhccCCCceeeecccccccccccccccccchhhHHHHHHHHHHHHHHhCC-HHHHHHHHH
Confidence            987 9999999999999 999999999999999999999999998875555444  34555555543322 234456677


Q ss_pred             HHHHHHcCCcccHHHHHHHHHhcc
Q 015541          300 PQITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       300 ~~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ..+..+|.+++..|+|.++++||.
T Consensus       231 ~~~~~~~~s~d~~egi~aFleKR~  254 (260)
T d1mj3a_         231 KLFYSTFATDDRREGMSAFVEKRK  254 (260)
T ss_dssp             HHHHHGGGSHHHHHHHHHHHTTSC
T ss_pred             HHHHHHhCCHHHHHHHHHHhCCCC
Confidence            788999999989999999999987

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-50  Score=381.94  Aligned_cols=252  Identities=19%  Similarity=0.242  Sum_probs=215.2

Q ss_pred             CccEEEEEeeCcEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCC
Q 015541           65 EEFVKGNVHPNGVAVITLD-RPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLn-rp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (405)
                      |++|.++. +++|++|+|| ||+++|+||.+|+.+|.++++.++.| ++++|||+|.| ++||+|+|++++........ 
T Consensus         1 y~~i~v~~-~~gi~~i~l~~rp~~~Nals~~~~~el~~al~~~~~d-~~~~vvl~g~g-~~FsaG~Dl~~~~~~~~~~~-   76 (258)
T d2fw2a1           1 YRDIVVKK-EDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAAD-DSKLVLFSAAG-SVFCCGLDFGYFVRHLRNDR-   76 (258)
T ss_dssp             CCSEEEEE-ETTEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHS-SCSEEEEEECS-SCSBCCBCHHHHHHHHHHCH-
T ss_pred             CceEEEEE-ECCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCc-cccccccccchhhhcccccc-
Confidence            46788987 6999999997 79999999999999999999999987 46999999997 89999999999876442221 


Q ss_pred             CCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (405)
Q Consensus       144 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~  223 (405)
                      ......+....++++..|.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++|.
T Consensus        77 ~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ig~  156 (258)
T d2fw2a1          77 NTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGK  156 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCH
T ss_pred             cchhhHHHHHHHHHHHhhhccceeeeeecccccccccccccccccccceecccceeeccccccccccccccccchhhcCc
Confidence            12234567778889999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHH
Q 015541          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQ  301 (405)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~  301 (405)
                      . .+++|++||++++ |++|+++||||++||++++.+.+.+++.......|.  ...|+.++..... .....++.+...
T Consensus       157 ~-~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~~~K~~~~~~~~~-~l~~~~~~e~~~  233 (258)
T d2fw2a1         157 A-SANEMLIAGRKLT-AREACAKGLVSQVFLTGTFTQEVMIQIKELASYNAIVLEECKALVRCNIKL-ELEQANERECEV  233 (258)
T ss_dssp             H-HHHHHHTTCCEEE-HHHHHHTTSCSEEECSTTHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             c-ccchhhccCcccc-cccccccccccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHhhcC-CHHHHHHHHHHH
Confidence            6 9999999999999 999999999999999999999999999884444433  3445555443211 112345556677


Q ss_pred             HHHHcCCcccHHHHHHHHHhcc
Q 015541          302 ITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       302 i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      +.++|.+++..|+|.+++||+.
T Consensus       234 ~~~~~~s~d~~Egi~af~EKR~  255 (258)
T d2fw2a1         234 LRKIWSSAQGIESMLKYVENKI  255 (258)
T ss_dssp             HHHHHTSHHHHHHHHHHHHSSC
T ss_pred             HHHHhCCHHHHHHHHHHhCCCC
Confidence            8999999999999999999987

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.5e-50  Score=383.67  Aligned_cols=251  Identities=16%  Similarity=0.116  Sum_probs=218.8

Q ss_pred             CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCC
Q 015541           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (405)
Q Consensus        64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (405)
                      .|+.|.++..++||++||| ||+++|+||.+|+.+|.++++.++.|++||+|||||+| ++||+|+|++++....   ..
T Consensus         7 ~~~~i~~~~~~~gV~~itl-rp~~~Nal~~~m~~el~~~~~~~~~d~~vr~vvl~g~g-~~FsaG~Dl~~~~~~~---~~   81 (263)
T d1wz8a1           7 RYPGLAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEG-GVFSAGGSFGLIEEMR---AS   81 (263)
T ss_dssp             HCTTEEEEEEETTEEEEEE-CCSGGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGG-GCCBCCBCHHHHHHHH---HC
T ss_pred             CCCeEEEEEcCCCEEEEEE-CCCCCCCCCHHHHHHHHHHHHHHhhCCCCeEEEEeccc-ccccccchhhhhhhhc---cc
Confidence            3677999887789999999 89999999999999999999999999999999999997 8999999999987632   12


Q ss_pred             CCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (405)
Q Consensus       144 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~  223 (405)
                      .+....++...++++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|+++++++++|.
T Consensus        82 ~~~~~~~~~~~~~~~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~~G~  161 (263)
T d1wz8a1          82 HEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGM  161 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCH
T ss_pred             ccccccchhhhhHHHHHhhhhhcceeeecccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            23455677888899999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHH
Q 015541          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQ  301 (405)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~  301 (405)
                      . ++++|++||++++ |++|+++||||++||++++.+.+.++++......|.  ..+|+.++......  ...++.+...
T Consensus       162 ~-~a~~l~l~g~~i~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~al~~~K~~l~~~~~~~--~~~~~~e~~~  237 (263)
T d1wz8a1         162 A-KAKYHLLLNEPLT-GEEAERLGLVALAVEDEKVYEKALEVAERLAQGPKEALHHTKHALNHWYRSF--LPHFELSLAL  237 (263)
T ss_dssp             H-HHHHHHHHTCCEE-HHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred             c-hhhhhcccccccc-hhHHHhcCCcccccchhhhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCh--HHHHHHHHHH
Confidence            7 9999999999999 999999999999999999999999999885444333  34455555543222  2345566667


Q ss_pred             HHHHcCCcccHHHHHHHHHhcc
Q 015541          302 ITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       302 i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ...+|.++|..|+|.+++|||+
T Consensus       238 ~~~~~~s~d~~Egi~Af~eKR~  259 (263)
T d1wz8a1         238 EFLGFSGKELEEGLKALKEKRP  259 (263)
T ss_dssp             HHHGGGSHHHHHHHHHHHTTSC
T ss_pred             HHHHccCHHHHHHHHHHhCCCC
Confidence            7888988889999999999987

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=8.3e-49  Score=374.86  Aligned_cols=260  Identities=20%  Similarity=0.276  Sum_probs=214.7

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      |+++.++..+++|++||||||+++|+||.+|+.+|.++++.+++|+++++|||||.| ++||+|+|++++..........
T Consensus         2 y~~l~~~~~~~~I~~itlnrP~~~Nals~~m~~el~~~l~~~~~d~~v~~vvltg~~-~~F~aG~dl~~~~~~~~~~~~~   80 (275)
T d1dcia_           2 YESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAG-KMFTSGIDLMDMASDILQPPGD   80 (275)
T ss_dssp             CSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEEST-TCSBCCBCHHHHHHHHTSCCCS
T ss_pred             CceEEEEEccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccc-cccccCccHHHhhhcccccccc
Confidence            678888766789999999999999999999999999999999999999999999986 8999999999988754322221


Q ss_pred             Cc------hHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHh
Q 015541          145 PL------VPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAA  218 (405)
Q Consensus       145 ~~------~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~  218 (405)
                      ..      ...+......++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~~~~~~~~  160 (275)
T d1dcia_          81 DVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLP  160 (275)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGG
T ss_pred             cccchhhhhccchhhhHHHHHHHHhcCCCEEEEEeeEeehhhHHHHhhcCchhhccCccccchhcccccccccccccccc
Confidence            11      122344456788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCC-hHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchh
Q 015541          219 KGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGN-LGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPL  295 (405)
Q Consensus       219 r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~-l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l  295 (405)
                      |++|......++++||+.++ |+||+++||||+++|+++ +.+.+.+++.......|.  ...|..+...... .....+
T Consensus       161 ~~~g~~~~~~~ll~~g~~~~-a~eA~~~Glv~~v~~~~~~l~~~~~~~a~~i~~~~p~a~~~~K~~l~~~~~~-~l~~~~  238 (275)
T d1dcia_         161 KVIGNRSLVNELTFTARKMM-ADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQGSKINLIYSRDH-SVDESL  238 (275)
T ss_dssp             GTCSCHHHHHHHHHHCCEEE-HHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHS-CHHHHH
T ss_pred             cccccccccccccccccccc-hhhhccCCCceeeeehhhhhhhcccccccccccccHHHHHHHHHHHHHHhcC-CHHHHH
Confidence            99996535678999999999 999999999999999765 566667777664444443  3345555443222 223456


Q ss_pred             hhhHHHHHHHcCCcccHHHHHHHHHhccCCccchhhHHH
Q 015541          296 KLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWA  334 (405)
Q Consensus       296 ~~~~~~i~~~f~~~~~ve~i~~~Le~~~~~~~~~~~~wa  334 (405)
                      +.+...+.++|.+++..|+|.+++|||+       ++|+
T Consensus       239 ~~e~~~~~~~~~~~d~~Egi~AfleKR~-------pk~~  270 (275)
T d1dcia_         239 DYMATWNMSMLQTQDIIKSVQAAMEKKD-------SKSI  270 (275)
T ss_dssp             HHHHHHHHHHTSSHHHHHHHHHHHTTCC-------GGGC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhCCCC-------CCCC
Confidence            6677788899999989999999999998       7885

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.3e-50  Score=379.23  Aligned_cols=251  Identities=18%  Similarity=0.197  Sum_probs=209.7

Q ss_pred             CCCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeC-CCCCcccCCChhhHHHhhhhC
Q 015541           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGS-GPRAFCAGMDIKGVVAEIQKD  141 (405)
Q Consensus        63 ~~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~-g~~~FcaG~Dl~~~~~~~~~~  141 (405)
                      |.+++|.++. +|+|++||||||+++|+||.+|+.+|.++++++++ +++++|||+|. |+++||+|+||+++.....  
T Consensus         1 M~~~~i~~~~-~~~v~~Itlnrp~~~Nal~~~~~~~l~~al~~~~~-~~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~--   76 (261)
T d1ef8a_           1 MSYQYVNVVT-INKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNR-PEIRCIILRAPSGSKVFSAGHDIHELPSGGR--   76 (261)
T ss_dssp             CCCSSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTCS-TTCCEEEEECCTTCSEEECCSCSTTC-------
T ss_pred             CCCCEEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEeccccchhhcccccccccccCCc--
Confidence            3478899998 79999999999999999999999999999999985 57999999985 5689999999999876321  


Q ss_pred             CCCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCC
Q 015541          142 RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGP  221 (405)
Q Consensus       142 ~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~  221 (405)
                      ..    ..+....+.++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|.+
T Consensus        77 ~~----~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~~~~pe~~~Gl~~~~~~~~~l~r~~  152 (261)
T d1ef8a_          77 DP----LSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDA  152 (261)
T ss_dssp             CT----TCTTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSS
T ss_pred             cc----cccccchhhhHHHHHhCchhhhhcccccccchhhhhhhhhhhhhhhHhHHHhhhhccccccccccccccccccc
Confidence            11    12334456788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCC-Ccchhhhh
Q 015541          222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPE-GEAPLKLL  298 (405)
Q Consensus       222 G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~-~~~~l~~~  298 (405)
                      |.. +++++++||+.++ |+||+++||||+++|++++.+.+.++++......|.  ..+|+.++....... ....++..
T Consensus       153 g~~-~a~~~~l~g~~~~-a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~  230 (261)
T d1ef8a_         153 GFH-IVKELIFTASPIT-AQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEELRVLGEAHTMNSDEFERI  230 (261)
T ss_dssp             CHH-HHHHHHHHCCCEE-HHHHHHTTSCSEEECHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_pred             Ccc-ccccccccCceEc-HHHHHHcCCcceeeechhhhhhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcCchhHHHHHHH
Confidence            997 9999999999999 999999999999999999999999999875444443  344555555432222 22334444


Q ss_pred             HHHHHHHcCCcccHHHHHHHHHhcc
Q 015541          299 LPQITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       299 ~~~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ......+|.++|..|+|.+++|||.
T Consensus       231 ~~~~~~~~~s~D~~Egi~AfleKR~  255 (261)
T d1ef8a_         231 QGMRRAVYDSEDYQEGMNAFLEKRK  255 (261)
T ss_dssp             HHHHHHHHTSHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHhCCHHHHHHHHHHhCCCC
Confidence            5567788998889999999999987

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=100.00  E-value=7.6e-50  Score=381.37  Aligned_cols=254  Identities=21%  Similarity=0.232  Sum_probs=214.7

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      |+.|.+++ ++||++||||||+++|+||.+|+.+|.++++.+++|+++++|||+|.| ++||+|+|++++..........
T Consensus         2 y~~i~~~i-~dgVa~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~i~~vvltg~g-~~F~aG~Dl~~~~~~~~~~~~~   79 (269)
T d1nzya_           2 YEAIGHRV-EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAE-DAFCAGFYLREIPLDKGVAGVR   79 (269)
T ss_dssp             CSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCGGGSCSSSHHHHHH
T ss_pred             CCceEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCc-ccccchhhHHHHhhcccccchh
Confidence            67899998 699999999999999999999999999999999999999999999997 8999999999875311000011


Q ss_pred             CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                      .....+....+.+...|.++|||+||+|||+|+|||++|+++|||||++++++|++||.++|++|++|++++++|++|..
T Consensus        80 ~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~~~~~g~~~~~g~~~~l~~~ig~~  159 (269)
T d1nzya_          80 DHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMR  159 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhhcchhehhhhhhcCCCceeeeecccHhhhhhhhhhcccccccccccccccccccccccChh
Confidence            12233444567888999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQI  302 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i  302 (405)
                       .++++++||+.|+ |+||+++||||++||++++.+.+.++++......|.  ..+|+.+++..... ....++.+...+
T Consensus       160 -~a~~l~ltg~~i~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~-l~~~~~~e~~~~  236 (269)
T d1nzya_         160 -RAMELMLTNRTLY-PEEAKDWGLVSRVYPKDEFREVAWKVARELAAAPTHLQVMAKERFHAGWMQP-VEECTEFEIQNV  236 (269)
T ss_dssp             -HHHHHHHHCCCBC-HHHHHHHTSCSCEECHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHH
T ss_pred             -hhhhccccccccc-hhHHHHcCCccccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Confidence             9999999999999 999999999999999999999999999875444333  34555555442222 134455667778


Q ss_pred             HHHcCCcccHHHHHHHHHhcc
Q 015541          303 TSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       303 ~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      .++|.+++..|++.+++++++
T Consensus       237 ~~~~~~~~~~e~v~aflekrk  257 (269)
T d1nzya_         237 IASVTHPHFMPCLTRFLDGHR  257 (269)
T ss_dssp             HHHHHSTTHHHHHHHHHTTCC
T ss_pred             HHHhcCHHHHHHHHHHHCCCC
Confidence            889988889999999999987

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=6.4e-49  Score=370.92  Aligned_cols=243  Identities=22%  Similarity=0.266  Sum_probs=209.5

Q ss_pred             eCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHH
Q 015541           74 PNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTA  153 (405)
Q Consensus        74 ~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~  153 (405)
                      +|+|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||+| +.||+|+|++++....  .........++..
T Consensus         6 ~G~va~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~v~~vvl~g~g-~~f~aG~dl~~~~~~~--~~~~~~~~~~~~~   82 (253)
T d1uiya_           6 KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRG-KAFSAGADLAFLERVT--ELGAEENYRHSLS   82 (253)
T ss_dssp             CSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCCCHHHHHHHT--TSCHHHHHHHHHH
T ss_pred             eCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccc-ccccccchhHHhhhcc--ccCcccccchhhh
Confidence            578999999999999999999999999999999999999999999997 8999999999887632  1222334556777


Q ss_pred             HHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhc
Q 015541          154 EYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMT  233 (405)
Q Consensus       154 ~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~lt  233 (405)
                      .+.+...|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++| .|++++|+|++|.. ++++|+||
T Consensus        83 ~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~e~~~g~~~-~~~~~~l~~~~g~~-~a~~l~l~  160 (253)
T d1uiya_          83 LMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVA-ALVSVILVRAVGEK-AAKDLLLT  160 (253)
T ss_dssp             HHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCC-HHHHHHHHHHSCHH-HHHHHHHH
T ss_pred             hhhhhhHHhcCCCCEEEEeCeEEehhhHHHHhhhhhhhhhhhhHHhhhhccccccc-ccchhhhhcccCHH-HHHHHhhc
Confidence            88899999999999999999999999999999999999999999999999999887 56788999999997 99999999


Q ss_pred             CCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHHHHHHcCCccc
Q 015541          234 GKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKS  311 (405)
Q Consensus       234 G~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~i~~~f~~~~~  311 (405)
                      |++++ |++|+++||||+++|.+++.+.+.+++.......|.  ..+|+.++...... ....+..+...+..++.++|.
T Consensus       161 g~~~~-a~eA~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K~~l~~~~~~~-l~~~l~~e~~~~~~~~~s~d~  238 (253)
T d1uiya_         161 GRLVE-AREAKALGLVNRIAPPGKALEEAKALAEEVAKNAPTSLRLTKELLLALPGMG-LEDGFRLAALANAWVRETGDL  238 (253)
T ss_dssp             CCEEE-HHHHHHHTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHGGGSC-HHHHHHHHHHHHHHGGGCHHH
T ss_pred             CcCCC-HHHHHHhCCCcccccccccchhHHHHHHhhcccchHHHHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHhCCHHH
Confidence            99999 999999999999999999999999998875444443  44566666543222 234566677778889988889


Q ss_pred             HHHHHHHHHhcc
Q 015541          312 VRQIIEELKKHQ  323 (405)
Q Consensus       312 ve~i~~~Le~~~  323 (405)
                      .|++.++++||+
T Consensus       239 ~egi~af~eKR~  250 (253)
T d1uiya_         239 AEGIRAFFEKRP  250 (253)
T ss_dssp             HHHHHHHHTTSC
T ss_pred             HHHHHHHhCCCC
Confidence            999999999987

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-49  Score=375.37  Aligned_cols=242  Identities=16%  Similarity=0.237  Sum_probs=207.5

Q ss_pred             eeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHH
Q 015541           73 HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFT  152 (405)
Q Consensus        73 ~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~  152 (405)
                      +++||++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.|+++||+|+|++.+...     .......+..
T Consensus        12 ~~~gI~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~~-----~~~~~~~~~~   86 (266)
T d1hzda_          12 ENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKM-----SSSEVGPFVS   86 (266)
T ss_dssp             GGTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTS-----CHHHHHHHHH
T ss_pred             ecCCEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCCcceEEEeccccccccccccccccccc-----cchhhhhhhh
Confidence            34689999999999999999999999999999999999999999999998899999999988652     2223456777


Q ss_pred             HHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHh
Q 015541          153 AEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGM  232 (405)
Q Consensus       153 ~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~l  232 (405)
                      ..+.++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.. ++++|++
T Consensus        87 ~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~ig~~-~a~~l~l  165 (266)
T d1hzda_          87 KIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMS-LAKELIF  165 (266)
T ss_dssp             HHHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHH-HHHHHHH
T ss_pred             HHHHHHHHHhcCCcccccccccccccccceeccccceeeecCCcEEeecccceeecCCccceeeehhhhHHH-HHHhhhc
Confidence            888999999999999999999999999999999999999999999999999999999999999999999997 9999999


Q ss_pred             cCCCCCcHHHHHHcCccceecCCCChH----HHHHHHHHhhcCCCcH---HHHHHHHHHhcCCCCCcchhhhhHHHHHHH
Q 015541          233 TGKRISTPSDALFAGLGTDYVPSGNLG----SLKEALLAVTFSEDPH---QDIVALLAKYSSDPEGEAPLKLLLPQITSC  305 (405)
Q Consensus       233 tG~~i~~a~eA~~~GLv~~vv~~~~l~----~~~~~l~~~~~~~~~~---~~i~~~l~~~~~~~~~~~~l~~~~~~i~~~  305 (405)
                      ||+.++ |++|+++||||++||++++.    +.+.++++. +...|+   ..+|..+++... ......+..+...+..+
T Consensus       166 tg~~~~-a~eA~~~Glv~~vv~~~~l~~~~~~~a~~~a~~-i~~~~p~a~~~~K~~l~~~~~-~~~~~~l~~e~~~~~~~  242 (266)
T d1hzda_         166 SARVLD-GKEAKAVGLISHVLEQNQEGDAAYRKALDLARE-FLPQGPVAMRVAKLAINQGME-VDLVTGLAIEEACYAQT  242 (266)
T ss_dssp             HTCEEE-HHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHT-TTTSCHHHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHTT
T ss_pred             cCCccC-HHHhhcccccccccChhhhhhHHHHHHHHHHHh-cccCChHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHH
Confidence            999999 99999999999999998764    444455555 344444   345566655432 22234455567778899


Q ss_pred             cCCcccHHHHHHHHHhcc
Q 015541          306 FSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       306 f~~~~~ve~i~~~Le~~~  323 (405)
                      |.+++..|++.++++||.
T Consensus       243 ~~s~d~~Eg~~AF~eKR~  260 (266)
T d1hzda_         243 IPTKDRLEGLLAFKEKRP  260 (266)
T ss_dssp             TTCHHHHHHHHHHTTTSC
T ss_pred             hCCHHHHHHHHHHhCCCC
Confidence            999989999999999987

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-47  Score=361.50  Aligned_cols=238  Identities=16%  Similarity=0.187  Sum_probs=194.6

Q ss_pred             CccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCC
Q 015541           65 EEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNT  144 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~  144 (405)
                      |++|.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+.+ +||++|.| ++||+|+|++++..... ....
T Consensus         2 ~~~i~~~~-~~gi~~Itlnrp~~~Nals~~~~~~l~~~l~~~~~d~~v-~vvl~g~g-~~F~aG~Dl~~~~~~~~-~~~~   77 (245)
T d2f6qa1           2 FETLVVTS-EDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNG-DYYSSGNDLTNFTDIPP-GGVE   77 (245)
T ss_dssp             CSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEEST-TCSBCCBCC----CCCT-THHH
T ss_pred             cceEEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCce-EEeecCCC-ccccCCccchhhhcccc-cccc
Confidence            57799997 689999999999999999999999999999999999887 89999986 89999999999865210 0001


Q ss_pred             CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChH
Q 015541          145 PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG  224 (405)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~  224 (405)
                      .....++...++++..|.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|.+|..
T Consensus        78 ~~~~~~~~~~~~~~~~i~~~~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~g~~  157 (245)
T d2f6qa1          78 EKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPA  157 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHH
T ss_pred             cccchhhhHHHHHHhhhhhcCCceEEEECCccccccccchhhhhhhhhhccCeEecccccCCCCccccchhhcccccccc
Confidence            12233445566788899999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHHhcCCC--CCcchhhhhHHHH
Q 015541          225 SVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDP--EGEAPLKLLLPQI  302 (405)
Q Consensus       225 ~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~l~~~~~~i  302 (405)
                       ++++|++||++++ |+||+++||||++||++++.+.+.++++.. +..|+.+++.+++.+....  .....+..+...+
T Consensus       158 -~a~~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l-a~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~  234 (245)
T d2f6qa1         158 -KATEMLIFGKKLT-AGEACAQGLVTEVFPDSTFQKEVWTRLKAF-AKLPPNALRISKEVIRKREREKLHAVNAEECNVL  234 (245)
T ss_dssp             -HHHHHHTTCCCEE-HHHHHHTTSCSEEECTTTHHHHHHHHHHHH-TTSCHHHHHHHHHHHHGGGHHHHHHHHHHHHHHH
T ss_pred             -hhhhhcccccccc-cccccccccccccCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhhhcCHHHHHHHHHHHH
Confidence             9999999999999 999999999999999999999999999874 5555544444443332211  1123344566678


Q ss_pred             HHHcCCc
Q 015541          303 TSCFSSE  309 (405)
Q Consensus       303 ~~~f~~~  309 (405)
                      ..+|.++
T Consensus       235 ~~~~~s~  241 (245)
T d2f6qa1         235 QGRWLSD  241 (245)
T ss_dssp             HHHHTSH
T ss_pred             HHHhcCc
Confidence            8888776

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=100.00  E-value=3.6e-47  Score=354.93  Aligned_cols=208  Identities=21%  Similarity=0.212  Sum_probs=184.0

Q ss_pred             EEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchH
Q 015541           69 KGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVP  148 (405)
Q Consensus        69 ~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~  148 (405)
                      +++..+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++....    ......
T Consensus         2 ~~~~~~d~I~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~~----~~~~~~   77 (230)
T d2a7ka1           2 VFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLS----RSEDIE   77 (230)
T ss_dssp             EEEEEETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-----CHHHHH
T ss_pred             EEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCcccccceeccchhhhhhhcccccccccc----cccccc
Confidence            3455578999999999999999999999999999999999999999999999889999999999987521    122355


Q ss_pred             HHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHH
Q 015541          149 KVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGA  228 (405)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~  228 (405)
                      .++...++++..+.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|+ .+|+|++|.. .++
T Consensus        78 ~~~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~-~~l~~~iG~~-~a~  155 (230)
T d2a7ka1          78 EWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGA-AILGFTHGFS-TMQ  155 (230)
T ss_dssp             HHHHHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHH-HHHHHHHCHH-HHH
T ss_pred             cchhhhhhhhhcccchhcceeeecccccccccccchhccchhhccccchhhhccccccccccccc-cccccccccc-ccc
Confidence            67788889999999999999999999999999999999999999999999999999999998876 4799999987 999


Q ss_pred             HHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 015541          229 YLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAK  284 (405)
Q Consensus       229 ~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~  284 (405)
                      +|++||++++ |+||+++||||++||++++.+.+.++++.. +..|..++...++.
T Consensus       156 ~l~l~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i-a~~~~~a~~~~K~~  209 (230)
T d2a7ka1         156 EIIYQCQSLD-APRCVDYRLVNQVVESSALLDAAITQAHVM-ASYPASAFINTKRA  209 (230)
T ss_dssp             HHHHHCCCBC-HHHHHHHTCCSEEECHHHHHHHHHHHHHHH-HTSCHHHHHHHHHH
T ss_pred             ccccccccch-HHHHHHhhhcccCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence            9999999999 999999999999999999999999998874 45555444444433

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=1.1e-46  Score=366.60  Aligned_cols=202  Identities=17%  Similarity=0.282  Sum_probs=182.2

Q ss_pred             CccEEEEEeeCcEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCC
Q 015541           65 EEFVKGNVHPNGVAVITLD-RPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (405)
Q Consensus        65 ~~~i~~~~~~~~v~~ItLn-rp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (405)
                      ++.|.++..++||++|+|| ||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.....  ..
T Consensus         5 ~~~i~~~~~~~gva~i~ln~~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~--~~   81 (310)
T d1wdka4           5 GKAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGK-DVFIVGADITEFVENFK--LP   81 (310)
T ss_dssp             CSSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SSSBBCCCHHHHHHHTT--SC
T ss_pred             CceEEEEEecCCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccchhhhhhhhhccc--cc
Confidence            4568888777899999998 89999999999999999999999999999999999986 89999999999876321  11


Q ss_pred             CCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCCh
Q 015541          144 TPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG  223 (405)
Q Consensus       144 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~  223 (405)
                      ......+....++++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~elal~cD~ria~~~a~f~~pe~~~Gl~P~~gg~~~L~r~iG~  161 (310)
T d1wdka4          82 DAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGV  161 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCH
T ss_pred             chhhhhhhhHHHHHHHHhhcCCccceeeccccccccccccchhhhhhhccccceecccccccCCCccccchhhhhhhhhh
Confidence            11223344456788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcC
Q 015541          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFS  271 (405)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~  271 (405)
                      . .+++|++||++++ |+||+++||||++||++++.+.+.+++++..+
T Consensus       162 ~-~a~~lll~g~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~  207 (310)
T d1wdka4         162 D-NAVEWIASGKENR-AEDALKVSAVDAVVTADKLGAAALDLIKRAIS  207 (310)
T ss_dssp             H-HHHHHHHHCCCEE-HHHHHHTTSSSEEECGGGHHHHHHHHHHHHHT
T ss_pred             h-hhhhhhccccccC-HHHHhhccCccEEccHHHHHHHHHHHHHHHHh
Confidence            7 9999999999999 99999999999999999999999999887544

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.7e-47  Score=370.11  Aligned_cols=255  Identities=15%  Similarity=0.090  Sum_probs=198.9

Q ss_pred             CCccEEEEE-eeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCC------CCCcccCCChhhHHH
Q 015541           64 AEEFVKGNV-HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSG------PRAFCAGMDIKGVVA  136 (405)
Q Consensus        64 ~~~~i~~~~-~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g------~~~FcaG~Dl~~~~~  136 (405)
                      ....|+|+. .++||++||||||+++||||.+|+.+|.++++.++.|+++|+|||||.|      ++.||+|+|++....
T Consensus        16 ~~~~i~~~~~~~~gi~~ItlnRP~~~NAl~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~~~   95 (297)
T d1q52a_          16 DLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGR   95 (297)
T ss_dssp             TCSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC-------
T ss_pred             CCcceEEEEEccCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCccEEEEecCCCcccchhhhhhhcchhhhhcc
Confidence            345688876 3689999999999999999999999999999999999999999999984      367888899887654


Q ss_pred             hhhhC------CCCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCC-eeeeCccccccccC
Q 015541          137 EIQKD------RNTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGLFP  209 (405)
Q Consensus       137 ~~~~~------~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~-a~f~~PE~~iGl~P  209 (405)
                      .....      ........+....+.+...|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|++|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GGG~~lal~~D~~ia~~~~~~f~~pe~~~Gl~p  175 (297)
T d1q52a_          96 SGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFD  175 (297)
T ss_dssp             ----------------------CHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCGGGGTCCC
T ss_pred             cccccccccccchhhhHHHHHHHHHHHHHHHHhcCCeEEEEEcceeeeccchhhhhhhccccccccccceeeeecccccc
Confidence            22111      111122233445667888999999999999999999999999999999999875 57999999999999


Q ss_pred             CccHHHHHhcCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHH---HHHHHHHhc
Q 015541          210 DVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQD---IVALLAKYS  286 (405)
Q Consensus       210 ~~G~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~---i~~~l~~~~  286 (405)
                      ++|++++|+|++|.+ .++++++||+.++ |+||+++||||++||++++.+.+.++++... ..|..+   .|..++...
T Consensus       176 ~~~~~~~L~r~iG~~-~a~~llltg~~~~-a~eA~~~Glv~~vv~~~el~~~~~~~a~~l~-~~~~~a~~~~K~~~~~~~  252 (297)
T d1q52a_         176 GGYGSAYLARQVGQK-FAREIFFLGRTYT-AEQMHQMGAVNAVAEHAELETVGLQWAAEIN-AKSPQAQRMLKFAFNLLD  252 (297)
T ss_dssp             CSTTTHHHHHHHCHH-HHHHHHHHCCEEC-HHHHHHHTSCSEEECGGGHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHTT
T ss_pred             ccccccccccccCcc-ceeeccccccccc-hHhhhhhccccccCchHHhhHHHHHHhhhhc-cCCHHHHHHHHHHHHHhh
Confidence            999999999999997 9999999999999 9999999999999999999999999998854 445434   445554432


Q ss_pred             CCCCCcchhhhhHHHHHHHcCCcccHHHHHHHHHhcc
Q 015541          287 SDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQ  323 (405)
Q Consensus       287 ~~~~~~~~l~~~~~~i~~~f~~~~~ve~i~~~Le~~~  323 (405)
                      ...  ........+.+..++.+++..|++.+++|||.
T Consensus       253 ~~~--~~~~~~~~~~~~~~~~s~d~~Egv~AF~eKR~  287 (297)
T d1q52a_         253 DGL--VGQQLFAGEATRLAYMTDEAVEGRDAFLQKRP  287 (297)
T ss_dssp             THH--HHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSC
T ss_pred             cCh--HHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCC
Confidence            111  11122234556788888888999999999988

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=1.5e-46  Score=354.79  Aligned_cols=234  Identities=19%  Similarity=0.243  Sum_probs=194.2

Q ss_pred             cEEEEE-eeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCC
Q 015541           67 FVKGNV-HPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTP  145 (405)
Q Consensus        67 ~i~~~~-~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~  145 (405)
                      .|.++. .++||++||||||+ +|+||.+|+.+|.++++.+++|+++++|||+|.|+++||+|+|++++..     ....
T Consensus         3 ~ilve~~~~~gIa~itln~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~Fs~G~Dl~~~~~-----~~~~   76 (249)
T d1sg4a1           3 RVLVEPDAGAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCG-----RSPA   76 (249)
T ss_dssp             SEEEEEETTTTEEEEEECCTT-TTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSS-----CCHH
T ss_pred             cEEEEEECCCCEEEEEECCCC-cCCCCHHHHHHHHHHHHHHHhCCCccEEEEEeccceeEecccccccccc-----cccc
Confidence            466666 34689999999997 5999999999999999999999999999999998778999999998754     2223


Q ss_pred             chHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeee--eCccccccccCCccHHHHHhcCCCh
Q 015541          146 LVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLL--AMPENGIGLFPDVGFSYIAAKGPGG  223 (405)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f--~~PE~~iGl~P~~G~~~~L~r~~G~  223 (405)
                      ....++...++++..+.++|||+||+|||+|+|||++|+++||||||+++++|  ++||+++|++|++|++++|+|++|.
T Consensus        77 ~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~pe~~~Gl~p~~g~~~~l~~~iG~  156 (249)
T d1sg4a1          77 HYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGH  156 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCH
T ss_pred             cccccchhhHHHHHhhhcCccccchhhcccccccccccccccccceeecccccccccccccccccccccccccccccccc
Confidence            45667888889999999999999999999999999999999999999999876  7899999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcH--HHHHHHHHHhcCCCCCcchhhhhHHH
Q 015541          224 GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPH--QDIVALLAKYSSDPEGEAPLKLLLPQ  301 (405)
Q Consensus       224 ~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~l~~~~~~  301 (405)
                      . .+++|++||++++ |++|+++||||+++|++++.+.+.+++++.....|.  ...|+.+++...... ...++.+.+.
T Consensus       157 ~-~a~~lll~g~~~~-a~~A~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~l-~~~~~~e~~~  233 (249)
T d1sg4a1         157 R-AAERALQLGLLFP-PAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIPDHARQLTKAMMRKATASRL-VTQRDADVQN  233 (249)
T ss_dssp             H-HHHHHHHHTCCBC-HHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH-HTTHHHHHHH
T ss_pred             c-ccccccccccccc-HHHHHhhccccccCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHHH
Confidence            7 9999999999999 999999999999999999999999999885444433  344555544321111 1223344444


Q ss_pred             HHHHcCCc
Q 015541          302 ITSCFSSE  309 (405)
Q Consensus       302 i~~~f~~~  309 (405)
                      +...+..+
T Consensus       234 ~~~~~~~e  241 (249)
T d1sg4a1         234 FVSFISKD  241 (249)
T ss_dssp             HHHHHTSH
T ss_pred             HHHHhCCH
Confidence            55555554

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-45  Score=350.49  Aligned_cols=192  Identities=19%  Similarity=0.195  Sum_probs=169.9

Q ss_pred             CCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCC
Q 015541           64 AEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRN  143 (405)
Q Consensus        64 ~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~  143 (405)
                      .++.|.++. +|+|++||||||+++|+||.+|+.+|.++++.+++|+++++|||+|+| ++||+|+|++++.........
T Consensus         3 ~~e~i~~~~-~~~v~~Itlnrp~~~Na~~~~~~~el~~al~~~~~d~~v~~vVl~g~g-~~FsaG~Dl~~~~~~~~~~~~   80 (266)
T d1pjha_           3 QNEKISYRI-EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSG-RFFSSGADFKGIAKAQGDDTN   80 (266)
T ss_dssp             CBTTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TBSBCCBCHHHHHC-------
T ss_pred             CCCeEEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccc-cccccchhHHHHHhccccccc
Confidence            467899998 699999999999999999999999999999999999999999999997 899999999998763321111


Q ss_pred             C------CchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEe-CCeeeeCccccccccCCccHHHH
Q 015541          144 T------PLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVT-EKTLLAMPENGIGLFPDVGFSYI  216 (405)
Q Consensus       144 ~------~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riat-e~a~f~~PE~~iGl~P~~G~~~~  216 (405)
                      .      .....++...+.+...+.++|||+||+|||+|+|||++|+++||||||+ ++++|++||+++|++|++|++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~~lGl~p~~g~~~~  160 (266)
T d1pjha_          81 KYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVS  160 (266)
T ss_dssp             CCSSHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHH
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHhcchhhhhhhhcccccccccchhccchhhhhhccccccccccccccccccccccc
Confidence            1      1223456677788999999999999999999999999999999999997 56889999999999999999999


Q ss_pred             HhcCCChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChH
Q 015541          217 AAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLG  259 (405)
Q Consensus       217 L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~  259 (405)
                      |+|++|.. ++++|++||+.++ |+||+++||||++++.++..
T Consensus       161 l~r~~g~~-~a~~llltg~~~~-a~eA~~~Glv~~v~~~~~~~  201 (266)
T d1pjha_         161 LPLKFGTN-TTYECLMFNKPFK-YDIMCENGFISKNFNMPSSN  201 (266)
T ss_dssp             HHHHHCHH-HHHHHHHTTCCEE-HHHHHHTTCCSEECCCCTTC
T ss_pred             cccccccc-hhhhhhccCCcCC-HHHHHHCCCEeEeeCchhhh
Confidence            99999997 9999999999999 99999999999999876553

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=2.1e-44  Score=339.99  Aligned_cols=212  Identities=16%  Similarity=0.174  Sum_probs=187.7

Q ss_pred             CCCccEEEEEeeCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCC
Q 015541           63 GAEEFVKGNVHPNGVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDR  142 (405)
Q Consensus        63 ~~~~~i~~~~~~~~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~  142 (405)
                      ..|+.|++++ +|+|++||||||+++|+||.+|+.+|.++++++++|+++++|||+|.| ++||+|+|++++..     .
T Consensus        10 ~~y~~i~~~~-~~~v~~itln~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vvl~g~g-~~FsaG~Dl~~~~~-----~   82 (249)
T d1szoa_          10 QKYENIRLER-DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTG-PSFCNEIDFTSFNL-----G   82 (249)
T ss_dssp             TSCTTEEEEE-ETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TBSBCEECGGGSCC-----S
T ss_pred             CCCCeEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcceEeeeccc-ccccccchhhhhhc-----c
Confidence            4588899998 699999999999999999999999999999999999999999999997 89999999998743     2


Q ss_pred             CCCchHHHHHHHHHHHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeee-CccccccccCCccHHHHHhcCC
Q 015541          143 NTPLVPKVFTAEYSLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLA-MPENGIGLFPDVGFSYIAAKGP  221 (405)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~-~PE~~iGl~P~~G~~~~L~r~~  221 (405)
                      .......++...+.++..|.++||||||+|||.|. ||++|+++||+||++++++|. +||+++|++|++|++++|+|++
T Consensus        83 ~~~~~~~~~~~~~~l~~~i~~~~~pvIa~v~g~~~-GG~~l~l~~D~ria~~~a~f~~~pe~~~g~~p~~g~~~~l~r~i  161 (249)
T d1szoa_          83 TPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVL  161 (249)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHH
T ss_pred             cccchhhhhhhhhhhhhhcccCcccceeeeccccc-cccccccccccccccCCcEEEEeecccccccccccccccccccc
Confidence            22345567777889999999999999999999885 577899999999999999995 7999999999999999999999


Q ss_pred             ChHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChHHHHHHHHHhhcCCCcHHHHHHHHHHh
Q 015541          222 GGGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY  285 (405)
Q Consensus       222 G~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~  285 (405)
                      |.. ++++|+|||++++ |+||+++||||++||++++.+.+.++++. ++..|..+++..++.+
T Consensus       162 g~~-~a~~l~ltg~~~~-a~eA~~~Glv~~vv~~~~l~~~a~~~a~~-la~~~~~a~~~~K~~l  222 (249)
T d1szoa_         162 GSN-RGRYFLLTGQELD-ARTALDYGAVNEVLSEQELLPRAWELARG-IAEKPLLARRYARKVL  222 (249)
T ss_dssp             CHH-HHHHHHHTTCEEE-HHHHHHHTSCSEEECHHHHHHHHHHHHHH-HHTSCHHHHHHHHHHH
T ss_pred             Ccc-ceeeecccCCCCC-HHHHHHhCCcCcccCHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHH
Confidence            997 9999999999999 99999999999999999999999999887 4555554554444433

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=4.2e-05  Score=66.17  Aligned_cols=136  Identities=14%  Similarity=0.073  Sum_probs=88.3

Q ss_pred             CCHHHHHHHHHHHHHHhcCC---CceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCc
Q 015541           91 MNLDMDIKYKSFLDEWESDP---RVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP  167 (405)
Q Consensus        91 l~~~m~~~L~~~l~~~~~d~---~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP  167 (405)
                      ++.++...+...+..++.++   .+. |.|.+.|       ||+..                    ...+...|..++.|
T Consensus        25 I~~~~~~~~i~~l~~l~~~~~~~~I~-l~InS~G-------G~v~~--------------------g~~i~d~i~~~~~~   76 (183)
T d1yg6a1          25 VEDHMANLIVAQMLFLEAENPEKDIY-LYINSPG-------GVITA--------------------GMSIYDTMQFIKPD   76 (183)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEE-EEEEECC-------BCHHH--------------------HHHHHHHHHHSSSC
T ss_pred             ECHHHHHHHHHHHHHhhhhccCCceE-EEEeCCC-------ccHHH--------------------HHHHHHHHHhCCCC
Confidence            57888999888887776432   343 4456654       44432                    22455578889999


Q ss_pred             EEEEECCccccccceeccccc--EEEEeCCeeeeCcccccccc---CCccHHH------------HHhcCCChHH-HHHH
Q 015541          168 YISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLF---PDVGFSY------------IAAKGPGGGS-VGAY  229 (405)
Q Consensus       168 vIa~v~G~a~GgG~~lal~~D--~riate~a~f~~PE~~iGl~---P~~G~~~------------~L~r~~G~~~-~a~~  229 (405)
                      |...+.|.|++.|.-|.++||  .|++.++++|-+-+...|..   .+..-..            .+.+..|... .-..
T Consensus        77 v~tv~~G~aaS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~tg~~~e~i~~  156 (183)
T d1yg6a1          77 VSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIER  156 (183)
T ss_dssp             EEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             EEEEEEEEeHHHHHHHHHcCCCCceeeCCCceEEecccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            999999999999999988888  79999999998877765542   1111000            0111112110 1122


Q ss_pred             HHhcCCCCCcHHHHHHcCccceecCC
Q 015541          230 LGMTGKRISTPSDALFAGLGTDYVPS  255 (405)
Q Consensus       230 l~ltG~~i~~a~eA~~~GLv~~vv~~  255 (405)
                      ++-.-.-++ |+||+++||||+|+..
T Consensus       157 ~~~~d~~lt-a~EAl~~GliD~Ii~~  181 (183)
T d1yg6a1         157 DTERDRFLS-APEAVEYGLVDSILTH  181 (183)
T ss_dssp             HTSSCEEEE-HHHHHHHTSSSEECCC
T ss_pred             HhccCcccc-HHHHHHcCCCcEEecc
Confidence            211122367 9999999999999965

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.60  E-value=0.00018  Score=61.89  Aligned_cols=136  Identities=12%  Similarity=0.079  Sum_probs=85.9

Q ss_pred             CCHHHHHHHHHHHHHHhc---CCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCc
Q 015541           91 MNLDMDIKYKSFLDEWES---DPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKP  167 (405)
Q Consensus        91 l~~~m~~~L~~~l~~~~~---d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP  167 (405)
                      +|.++..++...|..++.   ++.+. +.|.+.|       ||+...                    ..+...|..++.|
T Consensus        22 I~~~~~~~~i~~l~~l~~~~~~~~I~-l~InS~G-------G~v~~g--------------------l~i~d~i~~~~~~   73 (179)
T d2cbya1          22 VNDEIANRLCAQILLLAAEDASKDIS-LYINSPG-------GSISAG--------------------MAIYDTMVLAPCD   73 (179)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEE-EEEEECC-------BCHHHH--------------------HHHHHHHHHCSSC
T ss_pred             ECHHHHHHHHHHHHHHhccCCCCeEE-EEeeCCC-------CCHHHH--------------------HHHHHHHHhhccc
Confidence            678888888887755543   23343 4456554       444321                    2344567789999


Q ss_pred             EEEEECCccccccceeccccc--EEEEeCCeeeeCccccccccC---CccHHH------------HHhcCCChH-HHHHH
Q 015541          168 YISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFP---DVGFSY------------IAAKGPGGG-SVGAY  229 (405)
Q Consensus       168 vIa~v~G~a~GgG~~lal~~D--~riate~a~f~~PE~~iGl~P---~~G~~~------------~L~r~~G~~-~~a~~  229 (405)
                      |...+.|.|++.|.-+.+++|  .|+++++++|-+-+...|+.-   +.-...            .+.+..|.. ..-..
T Consensus        74 v~t~~~G~aaS~a~~il~ag~k~~R~~~~~s~~miH~~~~~~~G~~~~i~~~~~~l~~~~~~i~~i~a~~tg~~~~~i~~  153 (179)
T d2cbya1          74 IATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEA  153 (179)
T ss_dssp             EEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             eeeehhhhhhhHHHHHHHcCCCCceEECCchHhhcCCCchhcCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            999999999999999999998  899999999988776555421   111100            111111221 01222


Q ss_pred             HHhcCCCCCcHHHHHHcCccceecCC
Q 015541          230 LGMTGKRISTPSDALFAGLGTDYVPS  255 (405)
Q Consensus       230 l~ltG~~i~~a~eA~~~GLv~~vv~~  255 (405)
                      ++-.-.-++ |+||+++||||+|+..
T Consensus       154 ~~~~d~~l~-a~EA~~~GliDeIi~~  178 (179)
T d2cbya1         154 DSDRDRWFT-AAEALEYGFVDHIITR  178 (179)
T ss_dssp             HHHTTCEEE-HHHHHHHTSCSEECSC
T ss_pred             hhcCCceec-HHHHHHcCCCcEEecC
Confidence            333345577 9999999999999864

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.48  E-value=0.00024  Score=61.69  Aligned_cols=133  Identities=11%  Similarity=0.026  Sum_probs=88.7

Q ss_pred             CCHHHHHHHHHHHHHHhcC--CCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcE
Q 015541           91 MNLDMDIKYKSFLDEWESD--PRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPY  168 (405)
Q Consensus        91 l~~~m~~~L~~~l~~~~~d--~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPv  168 (405)
                      +|.++..++...|..+++.  +.+ -|.|.+.|       ||+...                    ..+...|..++.||
T Consensus        27 Id~~~~~~~i~~l~~l~~~~~~~I-~l~INS~G-------G~v~~g--------------------~ai~d~i~~~~~~v   78 (190)
T d2f6ia1          27 INKKTADELISQLLYLDNINHNDI-KIYINSPG-------GSINEG--------------------LAILDIFNYIKSDI   78 (190)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCCSCE-EEEEEECC-------BCHHHH--------------------HHHHHHHHHSSSCE
T ss_pred             eCHHHHHHHHHHHHHHhccCCCCe-EEEEeCch-------hhhhHH--------------------HHHHHHHHhhCCce
Confidence            6788888888888777542  334 44456655       444321                    24455677899999


Q ss_pred             EEEECCccccccceeccccc--EEEEeCCeeeeCccccccccCCccHHH------------------HHhcCCChHH-HH
Q 015541          169 ISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGFSY------------------IAAKGPGGGS-VG  227 (405)
Q Consensus       169 Ia~v~G~a~GgG~~lal~~D--~riate~a~f~~PE~~iGl~P~~G~~~------------------~L~r~~G~~~-~a  227 (405)
                      ...+.|.|++.|.-++++++  .|++.++++|-+.+...|..   |...                  .+.+..|... .-
T Consensus        79 ~tv~~G~aaS~a~~i~~aG~kg~R~~~pns~imiH~~s~~~~---G~~~di~~~~~~l~~~~~~~~~i~a~~tg~~~~~i  155 (190)
T d2f6ia1          79 QTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAF---GHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETI  155 (190)
T ss_dssp             EEEEEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC-----------CHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred             EEEEeccccchhHHHHHhCCCCccccCCCcEEEEcccccccC---CcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence            99999999999999999988  69999999999988876653   2111                  1111122210 11


Q ss_pred             HHHHhcCCCCCcHHHHHHcCccceecCC
Q 015541          228 AYLGMTGKRISTPSDALFAGLGTDYVPS  255 (405)
Q Consensus       228 ~~l~ltG~~i~~a~eA~~~GLv~~vv~~  255 (405)
                      ..++-.-.-++ |+||+++||||+|+.+
T Consensus       156 ~~~~~~d~~l~-a~EAl~~GliD~Ii~~  182 (190)
T d2f6ia1         156 EKDSDRDYYMN-ALEAKQYGIIDEVIET  182 (190)
T ss_dssp             HHHHHTTCEEC-HHHHHHHTSCSEECCC
T ss_pred             HHhccCCeeec-HHHHHHcCCCcEEccc
Confidence            11211233478 9999999999999964

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.46  E-value=0.00045  Score=59.97  Aligned_cols=138  Identities=11%  Similarity=0.079  Sum_probs=86.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhc-C--CCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCC
Q 015541           89 NAMNLDMDIKYKSFLDEWES-D--PRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYK  165 (405)
Q Consensus        89 Nal~~~m~~~L~~~l~~~~~-d--~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  165 (405)
                      .-++.++...+...|..++. |  ..+. +.|.+.|       ||+..                    ...+...|..++
T Consensus        31 g~I~~~~~~~~~~~l~~l~~~~~~~~I~-l~InS~G-------G~v~~--------------------glai~d~i~~~~   82 (192)
T d1y7oa1          31 GPVEDNMANSVIAQLLFLDAQDSTKDIY-LYVNTPG-------GSVSA--------------------GLAIVDTMNFIK   82 (192)
T ss_dssp             SCBCHHHHHHHHHHHHHHHHHCTTSCEE-EEEEECC-------BCHHH--------------------HHHHHHHHHHSS
T ss_pred             CEEchHHHHHHHHHHHHhhhhcccCcee-eeecCCC-------CCHHH--------------------HHHHHHHHHhcC
Confidence            34678888888887766643 2  2343 4556665       34322                    124555788899


Q ss_pred             CcEEEEECCccccccceeccc--ccEEEEeCCeeeeCccccccccCCccHHH------HH-----------hcCCChH-H
Q 015541          166 KPYISLMDGVTMGFGIGISGH--GRYRIVTEKTLLAMPENGIGLFPDVGFSY------IA-----------AKGPGGG-S  225 (405)
Q Consensus       166 kPvIa~v~G~a~GgG~~lal~--~D~riate~a~f~~PE~~iGl~P~~G~~~------~L-----------~r~~G~~-~  225 (405)
                      .||...+.|.|++.|.-|.++  ++.|++.++++|-+-+...|..-......      .+           ....|.. .
T Consensus        83 ~~v~t~~~G~aaS~as~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~~~~~~~~~~el~~~~~~i~~i~~~~tg~~~~  162 (192)
T d1y7oa1          83 ADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSME  162 (192)
T ss_dssp             SCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHHHHHHHHHHTCCHH
T ss_pred             cceEEEeccccCCccceeeeecCCCccccchHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence            999999999999988888665  57999999999999887766532211110      01           1111211 0


Q ss_pred             HHHHHHhcCCCCCcHHHHHHcCccceecCC
Q 015541          226 VGAYLGMTGKRISTPSDALFAGLGTDYVPS  255 (405)
Q Consensus       226 ~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~  255 (405)
                      .-...+-.-.-++ |+||+++||||+|+.+
T Consensus       163 ~i~~~~~rd~~ls-a~EAleyGliD~Ii~~  191 (192)
T d1y7oa1         163 KVHADAERDNWMS-AQETLEYGFIDEIMAN  191 (192)
T ss_dssp             HHHHHHHSCCCBC-HHHHHHHTSCSEECCC
T ss_pred             HHHHhhcCCceec-HHHHHHcCCCcEEecC
Confidence            1222333345688 9999999999999865

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=97.28  E-value=0.00088  Score=58.13  Aligned_cols=134  Identities=13%  Similarity=0.064  Sum_probs=87.5

Q ss_pred             CCCHHHHHHHHHHHHHHhc---CCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCC
Q 015541           90 AMNLDMDIKYKSFLDEWES---DPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKK  166 (405)
Q Consensus        90 al~~~m~~~L~~~l~~~~~---d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~k  166 (405)
                      -+|.++...+...+..++.   +..+.. .|.+.|       ||+..                    ...+...|..++.
T Consensus        34 ~I~~~~~~~~i~~l~~l~~~~~~~~I~l-~InS~G-------G~v~~--------------------g~~i~d~i~~~~~   85 (193)
T d1tg6a1          34 PIDDSVASLVIAQLLFLQSESNKKPIHM-YINSPG-------GVVTA--------------------GLAIYDTMQYILN   85 (193)
T ss_dssp             SBCHHHHHHHHHHHHHHHHHCSSSCEEE-EEEECC-------BCHHH--------------------HHHHHHHHHHSCS
T ss_pred             EEchHHHHHHHHHHHHhcccCCCcEEEE-EeecCc-------ccHHH--------------------HHHHHHHHHhhcC
Confidence            3578888888877666653   234544 446665       33321                    1244557888999


Q ss_pred             cEEEEECCccccccceeccccc--EEEEeCCeeeeCccccccccCCccHHHH------H-----------hcCCChH-HH
Q 015541          167 PYISLMDGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGFSYI------A-----------AKGPGGG-SV  226 (405)
Q Consensus       167 PvIa~v~G~a~GgG~~lal~~D--~riate~a~f~~PE~~iGl~P~~G~~~~------L-----------~r~~G~~-~~  226 (405)
                      ||...+.|.|++.|.-|.++++  .|++.++++|-+-+...|..-  -...+      +           ....|.. ..
T Consensus        86 ~V~tv~~G~aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~~G--~~~di~~~~~el~~~~~~i~~i~a~~Tg~~~~~  163 (193)
T d1tg6a1          86 PICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARG--QATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQV  163 (193)
T ss_dssp             CEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred             ceEEEEccchHHHHHHHhhcCccCccccCcccHHHhcCCccCCCc--CHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence            9999999999999999999998  699999999998887766531  11111      1           1111211 01


Q ss_pred             HHHHHhcCCCCCcHHHHHHcCccceecC
Q 015541          227 GAYLGMTGKRISTPSDALFAGLGTDYVP  254 (405)
Q Consensus       227 a~~l~ltG~~i~~a~eA~~~GLv~~vv~  254 (405)
                      -..++-.-.-++ |+||+++||||+++.
T Consensus       164 i~~~~~rD~~lt-a~EAl~yGliD~Ii~  190 (193)
T d1tg6a1         164 IESAMERDRYMS-PMEAQEFGILDKVLV  190 (193)
T ss_dssp             HHHHHSSCEEEC-HHHHHHHTSCSEECS
T ss_pred             HHHHhccCccCC-HHHHHHcCCCCEEcc
Confidence            122221122378 999999999999985

>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.0019  Score=58.65  Aligned_cols=141  Identities=15%  Similarity=0.144  Sum_probs=87.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (405)
Q Consensus        77 v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (405)
                      |.++-.|--=.--+++..-.+.+.++.+.+.+. .+-.|.++-.|      |+.+.+-..          ..........
T Consensus        98 v~v~a~Dftv~gGS~g~~~~~Ki~~a~e~A~~~-~lPlI~~~~sg------G~r~~e~~~----------sl~~~~~~~~  160 (263)
T d2f9yb1          98 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALED-NCPLICFSASG------GARMQEALM----------SLMQMAKTSA  160 (263)
T ss_dssp             CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHH-TCCEEEEEEES------SBCGGGTHH----------HHHHHHHHHH
T ss_pred             EEEEeeeehhhccccccchhhHHhHHHHHHHHc-CCCeEEEecCC------Ccccccccc----------hhhcchhHHH
Confidence            445555544456788888888888888887765 34566665433      333332211          1112223334


Q ss_pred             HHHHHHhCCCcEEEEECCccccccce-ecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCC
Q 015541          157 LICKISEYKKPYISLMDGVTMGFGIG-ISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK  235 (405)
Q Consensus       157 l~~~i~~~~kPvIa~v~G~a~GgG~~-lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~  235 (405)
                      ....+.....|+|+++.|.|.|||.. +++.+|++++.+.+.+++--.               |++       + ..||+
T Consensus       161 ~~~~~~~~~vP~I~v~~g~~~GG~aa~~~~~~d~i~~~~~s~i~~aGP---------------~vv-------e-~~~ge  217 (263)
T d2f9yb1         161 ALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFAGP---------------RVI-------E-QTVRE  217 (263)
T ss_dssp             HHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCH---------------HHH-------H-HHHTS
T ss_pred             HHHHHHhCCCceEEEecCCcchHHHhhhhhcCceEeeecceeeeccCH---------------HHH-------h-hhcCC
Confidence            44456677899999999999998864 777888888888877665211               111       1 12233


Q ss_pred             ----CCCcHHHHHHcCccceecCCCC
Q 015541          236 ----RISTPSDALFAGLGTDYVPSGN  257 (405)
Q Consensus       236 ----~i~~a~eA~~~GLv~~vv~~~~  257 (405)
                          -+.+++-..+.|+||.+++.++
T Consensus       218 ~~~e~~g~a~~~~~~G~iD~vv~~ee  243 (263)
T d2f9yb1         218 KLPPGFQRSEFLIEKGAIDMIVRRPE  243 (263)
T ss_dssp             CCCTTTTBHHHHGGGTCCSEECCHHH
T ss_pred             cCChhhccHHHHHhCCCCCEEECCHH
Confidence                2334666678999999997544

>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=97.05  E-value=0.0052  Score=55.28  Aligned_cols=106  Identities=15%  Similarity=0.129  Sum_probs=67.6

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (405)
Q Consensus        77 v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (405)
                      |.++-.+--=+.-+++....+.+..+.+.+.++. +-+|.|.-.|      |+-+.+-...         .. .+...+.
T Consensus        91 v~v~a~Dftv~GGS~g~~~~~K~~~a~e~A~~~~-lPlV~l~~sg------G~r~~eg~~~---------l~-~~~~~~~  153 (253)
T d1on3a1          91 VHAASQDFTVMGGSAGETQSTKVVETMEQALLTG-TPFLFFYDSG------GARIQEGIDS---------LS-GYGKMFF  153 (253)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEEEC------SBCGGGTHHH---------HH-HHHHHHH
T ss_pred             chhhhchhhhhcccceecccchhhhhHHHHhhcC-CCeEEEEecC------CCccccccee---------cc-ccceehH
Confidence            4444445444667889988999999888887764 4455554322      2233321110         00 1111222


Q ss_pred             HHHHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeC
Q 015541          157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM  200 (405)
Q Consensus       157 l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~  200 (405)
                      ....+.. ..|+|+++.|+|.||+......||++|+++++.+.+
T Consensus       154 ~~~~ls~-~vP~i~vv~Gp~~GG~a~~~~~~d~vi~~~~a~i~~  196 (253)
T d1on3a1         154 ANVKLSG-VVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFI  196 (253)
T ss_dssp             HHHHHTT-TSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEES
T ss_pred             HHHHHhc-cceEEEEEecCcccceeeccchhhheeccccceEEe
Confidence            2223333 489999999999999999999999999998777665

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.0022  Score=59.61  Aligned_cols=138  Identities=14%  Similarity=0.052  Sum_probs=94.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcE
Q 015541           89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPY  168 (405)
Q Consensus        89 Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPv  168 (405)
                      -+++++-.+.-.+.++.++.- ++-+|-|-=. +++| .|.+-.+.              .......++++.+..+.+|+
T Consensus       130 G~~~p~~~rKa~r~~~~a~~~-~~Pii~~vDt-pG~~-~g~~~E~~--------------g~~~~~a~~~~~~~~~~vP~  192 (316)
T d2f9ya1         130 GMPAPEGYRKALRLMQMAERF-KMPIITFIDT-PGAY-PGVGAEER--------------GQSEAIARNLREMSRLGVPV  192 (316)
T ss_dssp             GCCCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-SCSC-CSHHHHHT--------------THHHHHHHHHHHHHTCSSCE
T ss_pred             ccccHHHHHHHHHHHHHHHHc-CcceEEEEec-Cccc-CCcccccc--------------cHHHHHHHHHHHHHhCCCce
Confidence            358888999888988888875 3455555433 2233 33332211              12234456778899999999


Q ss_pred             EEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCCCCCcHHHHHHcCc
Q 015541          169 ISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGL  248 (405)
Q Consensus       169 Ia~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA~~~GL  248 (405)
                      |+.|-|-+.|||.--...+|.+.+-++++++.      +-|.++++..+ |-......+.+    ...++ ++|.+++|+
T Consensus       193 i~vv~g~g~~gga~a~~~~d~v~m~~~a~~sv------ispEg~AsILw-kd~~~a~eaAe----alklt-a~dL~~lgi  260 (316)
T d2f9ya1         193 VCTVIGEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILW-KSADKAPLAAE----AMGII-RPRLKELKL  260 (316)
T ss_dssp             EEEEEEEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHS-SCSTTHHHHHH----HHTCS-HHHHHTTTS
T ss_pred             EEEEEhhhhchhhhhhhhhhHHHHHhhhHHhh------ccchhhhhHhh-ccchhhcchHH----HHhhh-hHHHHHcCc
Confidence            99999999999986667789999999999984      34555555444 33221112222    24577 999999999


Q ss_pred             cceecCC
Q 015541          249 GTDYVPS  255 (405)
Q Consensus       249 v~~vv~~  255 (405)
                      ||+++|.
T Consensus       261 IDeII~E  267 (316)
T d2f9ya1         261 IDSIIPE  267 (316)
T ss_dssp             CSCCCCC
T ss_pred             hhhcccC
Confidence            9999974

>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.71  E-value=0.017  Score=51.75  Aligned_cols=138  Identities=17%  Similarity=0.128  Sum_probs=84.6

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHH
Q 015541           77 VAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYS  156 (405)
Q Consensus        77 v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (405)
                      |.++..|---..-+++....+.+..+.+.+.+.. +-+|.|...|      |+.+.+-....         . .....+.
T Consensus        88 v~v~a~D~t~~gGs~g~~~~~K~~r~~e~A~~~~-~P~I~~~dsg------G~r~~e~~~~l---------~-~~~~~~~  150 (251)
T d1vrga1          88 VAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMG-IPVIGINDSG------GARIQEGVDAL---------A-GYGEIFL  150 (251)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEEEC------SBCGGGTHHHH---------H-HHHHHHH
T ss_pred             EEEeeehhhhhhcccchHHHHHHHHHHHHHHHcC-CCEEEEEcCC------Ccccccccccc---------c-cchHHHH
Confidence            4444444444567888888888888888777653 4466665433      33443322111         0 1111222


Q ss_pred             HHHHHHhCCCcEEEEECCccccccceecccccEEEEeCC-eeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCC
Q 015541          157 LICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGK  235 (405)
Q Consensus       157 l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~-a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~  235 (405)
                      ... ...-..|+|+++.|+|.||+......||++|+.++ +.+       ++-+        |+++       + ..+|+
T Consensus       151 ~~~-~~s~~iP~I~vv~G~~~gG~a~~~~~~d~~im~~~~a~i-------~~aG--------p~vv-------~-~~~ge  206 (251)
T d1vrga1         151 RNT-LASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARM-------FITG--------PNVI-------K-AVTGE  206 (251)
T ss_dssp             HHH-HHTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBC-------BSSC--------HHHH-------H-HHHCC
T ss_pred             HHH-HHCCCCCEEEEEccCccccceehhhhCceEEEEccceeE-------EecC--------chhh-------h-hhcCC
Confidence            222 23457999999999999999999999999998754 332       2211        1111       1 25677


Q ss_pred             CCCcHHHH-------HHcCccceecCCC
Q 015541          236 RISTPSDA-------LFAGLGTDYVPSG  256 (405)
Q Consensus       236 ~i~~a~eA-------~~~GLv~~vv~~~  256 (405)
                      .++ .+|.       ...|++|.+++.+
T Consensus       207 ~~~-~eelGga~~h~~~sG~~D~v~~de  233 (251)
T d1vrga1         207 EIS-QEDLGGAMVHNQKSGNAHFLADND  233 (251)
T ss_dssp             CCC-HHHHHBHHHHHHTSCCCSEEESSH
T ss_pred             cCC-hHHccchhhhhhccccceEEECCH
Confidence            787 6664       4579999999864

>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.55  E-value=0.022  Score=51.10  Aligned_cols=139  Identities=19%  Similarity=0.152  Sum_probs=87.2

Q ss_pred             cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHH
Q 015541           76 GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEY  155 (405)
Q Consensus        76 ~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  155 (405)
                      .|.++..|..=+.-+++..-.+.+.++++.+.++. +-.|.|.-.|      |+.+.+-...          .......+
T Consensus        89 ~v~v~a~Dftv~gGS~g~~~~~K~~r~~e~A~~~~-lPlI~l~dsg------Garm~e~~~~----------~~~~~~~~  151 (258)
T d1xnya1          89 PVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTG-CPVVGINDSG------GARIQEGVAS----------LGAYGEIF  151 (258)
T ss_dssp             EEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECCC------SBCGGGTHHH----------HHHHHHHH
T ss_pred             EEEEEechhhhhcCccchhhHHHHHHHHHHHHHcC-CceEEEecCC------CcccCccccc----------ccchhHHH
Confidence            35556666555667889998999999888887754 5677776544      2333322111          01111222


Q ss_pred             HHHHHHHhCCCcEEEEECCccccccceecccccEEEEeC-CeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcC
Q 015541          156 SLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE-KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTG  234 (405)
Q Consensus       156 ~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate-~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG  234 (405)
                      ..... ..-..|+|+++.|.|.|||......||++|+.+ .+.+++-                    |++ .-.  ..+|
T Consensus       152 ~~~~~-~s~~vP~I~vv~G~~~gG~a~~~~~~~~vim~~~~a~i~~a--------------------GP~-vv~--~~~g  207 (258)
T d1xnya1         152 RRNTH-ASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFIT--------------------GPD-VIK--TVTG  207 (258)
T ss_dssp             HHHHH-TTTTSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------CHH-HHH--HHHC
T ss_pred             HHHHH-HcCCCCEEEEEcCCcChhHHHHHHhccchhhcccceEEEec--------------------CHH-HHH--HHhc
Confidence            22222 234699999999999999999888899888876 4444431                    111 111  3567


Q ss_pred             CCCCcHHHH-------HHcCccceecCCC
Q 015541          235 KRISTPSDA-------LFAGLGTDYVPSG  256 (405)
Q Consensus       235 ~~i~~a~eA-------~~~GLv~~vv~~~  256 (405)
                      +.++ .+|+       ...|++|.+++++
T Consensus       208 e~i~-~eelgga~~h~~~sG~~d~v~~de  235 (258)
T d1xnya1         208 EDVG-FEELGGARTHNSTSGVAHHMAGDE  235 (258)
T ss_dssp             CCCC-HHHHHBHHHHHHTSSCCSEEESSH
T ss_pred             CccC-hHHhccHHHHHhcCCeeEEEeCCH
Confidence            7777 6664       4569999999753

>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=96.42  E-value=0.016  Score=52.94  Aligned_cols=159  Identities=14%  Similarity=-0.047  Sum_probs=88.6

Q ss_pred             EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHH
Q 015541           80 ITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLI  158 (405)
Q Consensus        80 ItLnrp~-~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~  158 (405)
                      |.-|.+. +.-+++..-.+.+.++++.+.+.. +-+|.|.-.|      |+.+.+-....   .........|.    ..
T Consensus       108 v~a~D~t~~gGs~~~~~~~K~~r~~~lA~~~~-lP~I~l~ds~------Ga~~~~~~e~~---~~~~~~g~~~~----~~  173 (287)
T d1pixa2         108 VVASDNKKLAGAWVPGQAECLLRASDTAKTLH-VPLVYVLNCS------GVKFDEQEKVY---PNRRGGGTPFF----RN  173 (287)
T ss_dssp             EEEECTTTTTTEECTTHHHHHHHHHHHHHHHT-CCEEEEECCC------EECGGGHHHHS---SSTTSTTHHHH----HH
T ss_pred             EEEeccccccccchhhHHHHHHHHHHhhhhcC-CCEEEEecCC------cccCCcchhhc---cchhhHHHHHH----HH
Confidence            3334443 446788888888888888877653 5566664332      33333211110   11111111221    22


Q ss_pred             HHHHhCCCcEEEEECCccccccceecccccEEEEeCCeeeeC--ccccccccCCccHHHHHhcCCChHHHHHHHHhcCCC
Q 015541          159 CKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAM--PENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKR  236 (405)
Q Consensus       159 ~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~--PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~~  236 (405)
                      ..+....+|+|++|-|.|.|||.-.+++||++++.+++.+.+  |.+--+..+..+........+.   ....--.+-+.
T Consensus       174 a~ls~~~VP~Isvv~G~~~gGgAy~~~~~~~i~~~~~a~i~~~Gp~vv~~~~~~~~~~~~~~~ei~---~~~ge~~~~ee  250 (287)
T d1pixa2         174 AELNQLGIPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAVGGAGIMGGMNPKGHVDLEYANEIA---DMVDRTGKTEP  250 (287)
T ss_dssp             HHHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESCCCTTCCSCCSSSSCCHHHHHHHH---HHHHTTCCCCC
T ss_pred             HHHhhcCCCeEEEecCCccccceeccccceeEEecCCeEEEEECHHHhcccchhhhhhhhhHHHHH---hhhcccccccc
Confidence            346677899999999999999988888888888889888766  3332233232221111111110   00001124456


Q ss_pred             CCcHHHHH--HcCccceecCCC
Q 015541          237 ISTPSDAL--FAGLGTDYVPSG  256 (405)
Q Consensus       237 i~~a~eA~--~~GLv~~vv~~~  256 (405)
                      +. +.+..  ..|++|.+++++
T Consensus       251 LG-Ga~~H~~~sG~~d~v~~~e  271 (287)
T d1pixa2         251 PG-AVDIHYTETGFMREVYASE  271 (287)
T ss_dssp             SS-BHHHHTTTSCCSCEEESSH
T ss_pred             cc-cHHHhhhhcccceeecCCH
Confidence            65 45543  579999999764

>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.31  E-value=0.027  Score=50.51  Aligned_cols=139  Identities=14%  Similarity=0.102  Sum_probs=86.9

Q ss_pred             cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHH
Q 015541           76 GVAVITLDRPKALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEY  155 (405)
Q Consensus        76 ~v~~ItLnrp~~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  155 (405)
                      .|.++-.+-.-+.-+++..-.+.+.++.+.+.++. +-+|.|.-.|      |+.+.+-..          ........+
T Consensus        90 ~v~v~a~Dft~~gGS~g~~~g~K~~ra~e~A~~~~-lP~I~l~dsg------Gar~~eg~~----------~~~~~~~~~  152 (258)
T d2a7sa1          90 DVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTG-RPLIGINDGA------GARIQEGVV----------SLGLYSRIF  152 (258)
T ss_dssp             EEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECCC------SBCGGGCTH----------HHHHHHHHH
T ss_pred             eEEEecccceEeCCccchhhhhHHHHHHHHHHhcC-CceEEEeccC------Ccccccccc----------cccchhhHH
Confidence            35555556555678899999999999988887764 5566665433      333332111          001111222


Q ss_pred             HHHHHHHhCCCcEEEEECCccccccceecccccEEEEeC-CeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcC
Q 015541          156 SLICKISEYKKPYISLMDGVTMGFGIGISGHGRYRIVTE-KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTG  234 (405)
Q Consensus       156 ~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate-~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG  234 (405)
                      ... ....-..|+|+++.|+|.|||......||++|+.+ .+.+.+       -             |+. .-.  ..||
T Consensus       153 ~~~-~~~~~~vP~I~~v~G~~~gG~a~~~~~~d~~vm~~~~a~i~~-------a-------------GP~-vV~--~~~g  208 (258)
T d2a7sa1         153 RNN-ILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFI-------T-------------GPD-VIK--TVTG  208 (258)
T ss_dssp             HHH-HHHTTTSCEEEEECSCCBSGGGHHHHHSSEEEEEBTTBBCBS-------S-------------CHH-HHH--HHHC
T ss_pred             HHH-HHHcCCCCEEEEEecCcccHHHHHHHhccceEeecCceEEEc-------c-------------Chh-HHH--HhcC
Confidence            222 23345699999999999999999988999988865 444432       1             211 111  2467


Q ss_pred             CCCCcHHHH-------HHcCccceecCCC
Q 015541          235 KRISTPSDA-------LFAGLGTDYVPSG  256 (405)
Q Consensus       235 ~~i~~a~eA-------~~~GLv~~vv~~~  256 (405)
                      +.++ .+|.       .+.|++|.+++++
T Consensus       209 e~~~-~eeLGga~~h~~~sG~~D~v~~de  236 (258)
T d2a7sa1         209 EEVT-MEELGGAHTHMAKSGTAHYAASGE  236 (258)
T ss_dssp             CCCC-HHHHHBHHHHHHTSCCCSEEESSH
T ss_pred             CccC-hhhccCHhHhhhhccccceEeCCH
Confidence            7776 5543       4579999999853

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.10  E-value=0.041  Score=49.63  Aligned_cols=161  Identities=12%  Similarity=0.101  Sum_probs=101.3

Q ss_pred             eCcEEEEEEcCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHH
Q 015541           74 PNGVAVITLDRPKA-LNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFT  152 (405)
Q Consensus        74 ~~~v~~ItLnrp~~-~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~  152 (405)
                      +|...-|.-|+|.. ..+++.+-.+...+.++.++.. ++-.|.|.=.  ..|..|-+-..-              ...+
T Consensus        68 ~G~~vgvian~~~~~~G~~~~~~~~Ka~rfi~lc~~~-~iPlv~l~dt--pGf~~G~~~E~~--------------g~~~  130 (271)
T d2a7sa2          68 DGRPVGIVANQPTHFAGCLDINASEKAARFVRTCDCF-NIPIVMLVDV--PGFLPGTDQEYN--------------GIIR  130 (271)
T ss_dssp             SSCEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE--CCBCCCHHHHHH--------------CHHH
T ss_pred             CCeEEEEEeccccccCCCcCHHHHHHHHHHHHHHHHh-CCceEEeech--hhhhhhccHHHh--------------hHHH
Confidence            44433344455653 3689999999999999999875 5778887655  247776654321              1345


Q ss_pred             HHHHHHHHHHhCCCcEEEEECCccccccce----ecccccEEEEeCCeeeeCccccccccCCccHHHHHhc-CCChH---
Q 015541          153 AEYSLICKISEYKKPYISLMDGVTMGFGIG----ISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAK-GPGGG---  224 (405)
Q Consensus       153 ~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~----lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r-~~G~~---  224 (405)
                      ..-++++.+..+..|.|+.|=|.+.|||..    -++.+|+++|.++++++.       .+.-|+...+-+ .+...   
T Consensus       131 ~ga~~~~a~a~~~vP~isvi~~~~~G~~~~am~~~~~~~d~~~AwP~A~igv-------Mgpegaa~v~~~~~l~~~~~~  203 (271)
T d2a7sa2         131 RGAKLLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAV-------MGASGAVGFVYRQQLAEAAAN  203 (271)
T ss_dssp             HHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTTTTTTGGGTS
T ss_pred             HHHHHHHHHHhCCCCeEEEEeCCccchhhhhhcccccccceEEEecceeEee-------cCHHHHHHHHHHHhhhhhhhc
Confidence            556888899999999999999999987733    223467777766666554       333333333322 11100   


Q ss_pred             ------HHHHH-HHhcCCCCCcHHHHHHcCccceecCCCChH
Q 015541          225 ------SVGAY-LGMTGKRISTPSDALFAGLGTDYVPSGNLG  259 (405)
Q Consensus       225 ------~~a~~-l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~  259 (405)
                            ..... .-..-..-+ +..|...|++|.|+++.+.-
T Consensus       204 ~~~~~~~~~~~~~e~~e~~~~-p~~aa~~g~iD~VIdP~dTR  244 (271)
T d2a7sa2         204 GEDIDKLRLRLQQEYEDTLVN-PYVAAERGYVDAVIPPSHTR  244 (271)
T ss_dssp             SCCTTSSTTHHHHHHHTTTSB-SHHHHHHTSSSEECCGGGHH
T ss_pred             ccchHHHHHHHHHHHHHHhcC-HHHHHHcCCCCeeECHHHHH
Confidence                  00011 111222234 77888999999999887653

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=95.02  E-value=0.069  Score=47.93  Aligned_cols=156  Identities=13%  Similarity=0.119  Sum_probs=98.0

Q ss_pred             EEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHH
Q 015541           77 VAVITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEY  155 (405)
Q Consensus        77 v~~ItLnrp~-~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  155 (405)
                      |++|. |+|. ...+++.+-.+...+.++.++.. ++-.|.|.=.  ..|..|-+-..              ....+..-
T Consensus        69 vgvia-n~~~~~~G~~~~~~a~Kaarfi~lc~~~-~iPlv~l~D~--pGf~~G~~~E~--------------~g~i~~ga  130 (264)
T d1on3a2          69 VGIVA-NQPSVMSGCLDINASDKAAEFVNFCDSF-NIPLVQLVDV--PGFLPGVQQEY--------------GGIIRHGA  130 (264)
T ss_dssp             EEEEE-ECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE--CCBCCCHHHHH--------------TTHHHHHH
T ss_pred             EEEEe-ccchhcccccChHHHHHHHHHHHHHHhc-CCceEEEecc--ccccccHHHHH--------------HHHHHHHH
Confidence            55555 5554 46789999999999999998885 5777777654  34777765332              11355667


Q ss_pred             HHHHHHHhCCCcEEEEECCccccccceec----ccccEEEEeCCeeeeCccccccccCCccHHHHHhcC-----CChHHH
Q 015541          156 SLICKISEYKKPYISLMDGVTMGFGIGIS----GHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG-----PGGGSV  226 (405)
Q Consensus       156 ~l~~~i~~~~kPvIa~v~G~a~GgG~~la----l~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~-----~G~~~~  226 (405)
                      +++..+.++.+|.|+.|=|.+.|||..-.    ...|+++|.+++       .+|..+.-|+...+-+.     ......
T Consensus       131 ~~~~a~a~~~vP~itvi~rkayG~g~~am~g~~~~~d~~~aWP~A-------~~~vMg~Egaa~v~~~~el~a~~~~~~~  203 (264)
T d1on3a2         131 KMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSA-------EIAVMGAEGAANVIFRKEIKAADDPDAM  203 (264)
T ss_dssp             HHHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTC-------EEESSCHHHHHHHHTHHHHHHSSCHHHH
T ss_pred             HHHHHHHcCCCCEEEEEeccccCccccccccccCChhheeeHHhh-------HhhhccHHHHHHHHHhhhhhhhhhhhhh
Confidence            88999999999999999999999774322    234556555555       55555444554444221     010000


Q ss_pred             HHH-HH-hcCCCCCcHHHHHHcCccceecCCCCh
Q 015541          227 GAY-LG-MTGKRISTPSDALFAGLGTDYVPSGNL  258 (405)
Q Consensus       227 a~~-l~-ltG~~i~~a~eA~~~GLv~~vv~~~~l  258 (405)
                      ..+ +. ..-..-+ +..|...|++|.|+++.+.
T Consensus       204 ~~~~~~e~~~~~~~-p~~aA~~g~iD~VIdP~eT  236 (264)
T d1on3a2         204 RAEKIEEYQNAFNT-PYVAAARGQVDDVIDPADT  236 (264)
T ss_dssp             HHHHHHHHHHHHSS-HHHHHHTTSSSEECCGGGH
T ss_pred             hHHHHHHHHHHhcC-HHHHHHcCCCCeeECHHHH
Confidence            011 11 1111134 7788889999999988664

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=94.92  E-value=0.052  Score=48.73  Aligned_cols=156  Identities=13%  Similarity=0.132  Sum_probs=98.2

Q ss_pred             EEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHH
Q 015541           77 VAVITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEY  155 (405)
Q Consensus        77 v~~ItLnrp~-~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  155 (405)
                      |++|. |+|. ...+++.+-.+...+.++.++.. ++-.|.|.=.  ..|..|-+-..              ....+...
T Consensus        69 vgvia-n~~~~~~G~~~~~~a~Kaa~fi~lc~~~-~iPli~l~Dt--pGf~~G~~~E~--------------~g~~~~ga  130 (264)
T d1vrga2          69 VGIVA-NQPSVLAGVLDIDSSDKAARFIRFLDAF-NIPILTFVDT--PGYLPGVAQEH--------------GGIIRHGA  130 (264)
T ss_dssp             EEEEE-ECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE--CCBCCCHHHHH--------------TTHHHHHH
T ss_pred             EEEEe-ccccccccchhhhhHHHHHHHHHHHHHh-CCceEEEeec--ccccccHHHHH--------------HhHHHHHH
Confidence            55554 5554 34679999999999999998875 5667777654  24776655431              11345666


Q ss_pred             HHHHHHHhCCCcEEEEECCccccccceecc-----cccEEEEeCCeeeeCccccccccCCccHHHHHhcC-----CChHH
Q 015541          156 SLICKISEYKKPYISLMDGVTMGFGIGISG-----HGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG-----PGGGS  225 (405)
Q Consensus       156 ~l~~~i~~~~kPvIa~v~G~a~GgG~~lal-----~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~-----~G~~~  225 (405)
                      ++++.+..+..|.|+.|=|.+.|||. +++     .+|++++.++++++.       ...-|+...+-+.     --...
T Consensus       131 ~~~~a~a~~~vP~i~viir~~yG~g~-~am~~~~~~~d~~~awP~a~~~v-------m~pe~aa~v~~~~~l~~~~~~~~  202 (264)
T d1vrga2         131 KLLYAYSEATVPKITVILRKAYGGAY-IAMGSKHLGADMVLAWPSAEIAV-------MGPEGAANIIFKREIEASSNPEE  202 (264)
T ss_dssp             HHHHHHHHCCSCEEEEEEEEEEHHHH-HHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTHHHHHHSSCHHH
T ss_pred             HHHHHHhcCCCCEEEEEeCCcccHHh-hhccCCccCCCeeeeccceeEEe-------cCHHHhhhhhhhhhhhhhhCcHH
Confidence            88899999999999999999998865 333     477777766666554       3333333332211     10000


Q ss_pred             HHHHH--HhcCCCCCcHHHHHHcCccceecCCCChH
Q 015541          226 VGAYL--GMTGKRISTPSDALFAGLGTDYVPSGNLG  259 (405)
Q Consensus       226 ~a~~l--~ltG~~i~~a~eA~~~GLv~~vv~~~~l~  259 (405)
                      ....+  .+.-..-+ +..+...|++|.|+++.+..
T Consensus       203 ~~~~~~~~~~e~~~~-~~~aa~~g~iD~VIdP~dTR  237 (264)
T d1vrga2         203 TRRKLIEEYKQQFAN-PYIAASRGYVDMVIDPRETR  237 (264)
T ss_dssp             HHHHHHHHHHHHTSS-HHHHHHTTSSSEECCGGGHH
T ss_pred             HHHHHHHHHHHHhcC-HHHHHHcCCCCeeECHHHHH
Confidence            00000  01111124 78889999999999886643

>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.38  E-value=0.01  Score=55.19  Aligned_cols=77  Identities=14%  Similarity=0.052  Sum_probs=52.0

Q ss_pred             CCCcEEEEECCccccccceecccccEEEEeCCeeeeCccccccccCCccHHHHHhcCCChHHHHHHHHhcCCCCCcHHHH
Q 015541          164 YKKPYISLMDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDA  243 (405)
Q Consensus       164 ~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~~G~~~~a~~l~ltG~~i~~a~eA  243 (405)
                      -..|+|++|.|.|.|+|.-++..||++|+++++.+.+.           |...+.+..|.. .    -.+.+.+.|++-.
T Consensus       239 ~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~s~i~lt-----------Gp~~l~~~lG~e-V----y~s~~eLGG~~i~  302 (333)
T d1uyra1         239 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILT-----------GAPAINKMLGRE-V----YTSNLQLGGTQIM  302 (333)
T ss_dssp             HHSCEEEEESSCEETHHHHHHHHTCCEEEETTCCEESS-----------CHHHHHHHSSSC-C----CSCTHHHHSHHHH
T ss_pred             CCCCEEEEEeCCccccceeecccccEEEEeCCceEEee-----------CHHHHHHhcCcc-c----cCChhHhCCHhHH
Confidence            36999999999999999999999999999998766541           122333333321 0    0011122234445


Q ss_pred             HHcCccceecCCC
Q 015541          244 LFAGLGTDYVPSG  256 (405)
Q Consensus       244 ~~~GLv~~vv~~~  256 (405)
                      ...|+++.++++|
T Consensus       303 ~~nGv~h~~a~dd  315 (333)
T d1uyra1         303 YNNGVSHLTAVDD  315 (333)
T ss_dssp             HHHTSSSEEESSH
T ss_pred             hhCCCceEEeCCH
Confidence            6799999999864

>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.98  E-value=0.77  Score=43.01  Aligned_cols=108  Identities=14%  Similarity=0.224  Sum_probs=66.8

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcE
Q 015541           89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPY  168 (405)
Q Consensus        89 Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPv  168 (405)
                      -.+.++-.....+++..+.+..++-.|+|.-.  +.|+.|-+-.              ....++..-.++..+.++..|+
T Consensus       108 gv~~p~sA~K~A~~i~d~cd~~~lPLi~l~D~--pGF~~G~~~E--------------~~gilr~GA~iv~A~~~~~vP~  171 (404)
T d1uyra2         108 QVWHPNSAFKTAQAINDFNNGEQLPMMILANW--RGFSGGQRDM--------------FNEVLKYGSFIVDALVDYKQPI  171 (404)
T ss_dssp             TCBCHHHHHHHHHHHHHHHTTSCCCEEECCCC--CCBCC--------------------CTHHHHHHHHHHHHHTCCSCE
T ss_pred             CccCchHHHHHHHHHHHhhhccccceEEeecC--CcccCcHHHH--------------HHHHHHHHHHHHHHHHhcCCCE
Confidence            35677777888888877766567778888654  5688876521              1123455667888999999999


Q ss_pred             EEEE--CCccccccceecc---cccEEEEeCCeeeeCccccccccCCccHHHHH
Q 015541          169 ISLM--DGVTMGFGIGISG---HGRYRIVTEKTLLAMPENGIGLFPDVGFSYIA  217 (405)
Q Consensus       169 Ia~v--~G~a~GgG~~lal---~~D~riate~a~f~~PE~~iGl~P~~G~~~~L  217 (405)
                      |+.|  .|.+.||...+.-   ..++.     ..|+.|...+|..+.-|+.-..
T Consensus       172 i~vI~~~g~~~GGa~vv~~~~~~~~~~-----~~yAwP~a~~gVm~pEGav~I~  220 (404)
T d1uyra2         172 IIYIPPTGELRGGSWVVVDPTINADQM-----EMYADVNARAGVLEPQGMVGIK  220 (404)
T ss_dssp             EEEECTTCEEEHHHHHTTCGGGGTTTE-----EEEEETTCEEESSCHHHHHHHH
T ss_pred             EEEEeCCcccchhhhhcccCccCCccc-----eEEECCccccccCChhhhhhhe
Confidence            9999  6766665443321   11211     2355566666666666655444

>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=93.92  E-value=0.78  Score=41.41  Aligned_cols=151  Identities=14%  Similarity=0.095  Sum_probs=91.5

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHHHHHHHHHhCCCcE
Q 015541           89 NAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEYSLICKISEYKKPY  168 (405)
Q Consensus        89 Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPv  168 (405)
                      -+|+.+-.+...+.++.++.. ++-+|.|.=.  ..|-.|-+-..              ....+..-+++..+..+.+|.
T Consensus        97 G~l~~~~a~K~~rfi~lc~~~-~iPlv~l~D~--pGf~~g~~~E~--------------~g~~r~ga~~~~a~~~~~VP~  159 (299)
T d1pixa3          97 GKLYRQGLVKMNEFVTLCARD-RLPIVWIQDT--TGIDVGNDAEK--------------AELLGLGQSLIYSIQTSHIPQ  159 (299)
T ss_dssp             TEECHHHHHHHHHHHHHHHHT-TCCEEEEECC--CEECCSHHHHH--------------TTHHHHHHHHHHHHHTCCCCE
T ss_pred             CccCHHHHHHHHHHHHHHHHc-CCeEEEEEeC--CCcccchHHHh--------------hhHHHHHHHHHHHHHhhccee
Confidence            568899999999999999885 4667777533  24776644321              113455667888999999999


Q ss_pred             EEEECCccccccceec----ccccEEEEeCCeeeeCccccccccCCccHHHHHhc-CC------ChH--H---HHHHHHh
Q 015541          169 ISLMDGVTMGFGIGIS----GHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAK-GP------GGG--S---VGAYLGM  232 (405)
Q Consensus       169 Ia~v~G~a~GgG~~la----l~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r-~~------G~~--~---~a~~l~l  232 (405)
                      |+.|=|.+.|||....    ...|++++     ++.|...+|..+.-|+...+-+ .+      +..  .   .-..+.-
T Consensus       160 isvi~r~~~G~a~~am~g~~~~~~~~~~-----~awP~aeigvMg~E~aa~vl~~~el~~~~~~~~~~~e~~e~~~~~~~  234 (299)
T d1pixa3         160 FEITLRKGTAAAHYVLGGPQGNDTNAFS-----IGTAATEIAVMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQ  234 (299)
T ss_dssp             EEEECSEEETTHHHHTTCTTCTTTEEEE-----EECTTCEEESSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             EEEEecccccccccccccCccCccccee-----cCCCccccccccchhhheeehhhhhhhhhhhhhhhhHHHHHHHHHHH
Confidence            9999999999874321    22333221     2335555666554444444321 11      100  0   0011110


Q ss_pred             -cCCCCCcHHHHHHcCccceecCCCChHHHH
Q 015541          233 -TGKRISTPSDALFAGLGTDYVPSGNLGSLK  262 (405)
Q Consensus       233 -tG~~i~~a~eA~~~GLv~~vv~~~~l~~~~  262 (405)
                       .=+..+ +..|...|++|.|+++.+.-...
T Consensus       235 ~~~~~~s-p~~aAs~~~iD~IIDP~dTR~~L  264 (299)
T d1pixa3         235 AFYTKSR-PKVCAELGLVDEIVDMNKIRGYV  264 (299)
T ss_dssp             HHHHTTS-HHHHHHHTSSSEECCTTTHHHHH
T ss_pred             HHHHhcC-HHHHHHhCCcCeeECHHHHHHHH
Confidence             002345 78889999999999987754433

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=91.02  E-value=0.45  Score=42.25  Aligned_cols=155  Identities=14%  Similarity=0.187  Sum_probs=97.2

Q ss_pred             EEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEeeCCCCCcccCCChhhHHHhhhhCCCCCchHHHHHHHH
Q 015541           77 VAVITLDRPK-ALNAMNLDMDIKYKSFLDEWESDPRVKCVLIEGSGPRAFCAGMDIKGVVAEIQKDRNTPLVPKVFTAEY  155 (405)
Q Consensus        77 v~~ItLnrp~-~~Nal~~~m~~~L~~~l~~~~~d~~v~~vvl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  155 (405)
                      |++|. |+|. ...+++.+-.+...+.++.++.. ++-.|.|.-.  ..|-.|.+-..              ....+..-
T Consensus        67 vgvia-~~~~~~~G~~~~~~a~Ka~~fi~lc~~~-~iPli~l~d~--pGf~~G~~~E~--------------~g~~~~ga  128 (263)
T d1xnya2          67 VGIVA-NQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDV--PGFLPGVDQEH--------------DGIIRRGA  128 (263)
T ss_dssp             EEEEE-ECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE--CCBCCCHHHHH--------------TTHHHHHH
T ss_pred             EEEEe-cccceecCCcchhhHHHHHHHHHHHHHh-CCceEEeecc--cccccchhHHH--------------HhHHHHHH
Confidence            55554 5554 34689999999999999998885 5667777655  24776655431              11345666


Q ss_pred             HHHHHHHhCCCcEEEEECCccccccceecc----cccEEEEeCCeeeeCccccccccCCccHHHHHhcC-----CC----
Q 015541          156 SLICKISEYKKPYISLMDGVTMGFGIGISG----HGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKG-----PG----  222 (405)
Q Consensus       156 ~l~~~i~~~~kPvIa~v~G~a~GgG~~lal----~~D~riate~a~f~~PE~~iGl~P~~G~~~~L~r~-----~G----  222 (405)
                      ++++.+.++..|.|+.|-|.+.|||.....    ..|+++|.+++.++.       .+.-|+...+-+.     ..    
T Consensus       129 ~~~~a~a~~~vPkitvi~~~~~Gga~~~m~~~~~~~d~~~awP~a~~gv-------m~pe~aa~il~~~~~~~a~~~~~~  201 (263)
T d1xnya2         129 KLIFAYAEATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIAV-------MGAQGAVNILHRRTIADAGDDAEA  201 (263)
T ss_dssp             HHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTHHHHHSCCTTCSS
T ss_pred             HHHHHHHccCCCeEEEEecCccccceeccCCcccCCcEEEEcchhhhhc-------cCHHHHHHHHHHHHHhhhccchHH
Confidence            888999999999999999999987754322    357777776666654       3333433333211     00    


Q ss_pred             -hHHHHHHHHhcCCCCCcHHHHHHcCccceecCCCChH
Q 015541          223 -GGSVGAYLGMTGKRISTPSDALFAGLGTDYVPSGNLG  259 (405)
Q Consensus       223 -~~~~a~~l~ltG~~i~~a~eA~~~GLv~~vv~~~~l~  259 (405)
                       ......++.  -...+ +..+...|++|.|+++.+..
T Consensus       202 ~~~~~~~~~~--~~~~~-p~~aA~~g~iD~VIdP~dTR  236 (263)
T d1xnya2         202 TRARLIQEYE--DALLN-PYTAAERGYVDAVIMPSDTR  236 (263)
T ss_dssp             SHHHHHHHHH--HHHSS-SHHHHHHTSSSEECCGGGHH
T ss_pred             HHHHHHHHHH--HHhcC-HHHHHHcccCCcccCHHHHH
Confidence             000001100  01134 66788889999999887653