Citrus Sinensis ID: 015569

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400----
MAIPSPSLSIFLLFLMTPALILASAVPDPELVVHEVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAAPDRAFSKEVTKHEDAPESEWRNWNWRSEGDLMVNGAFFTASGAGASSSYARASSLGARPSALVGPITGSAGALICKKGARC
ccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHccccccccccccccccccccEEEEccccccccccccHHHHHHHHHccccEEEEEEEEEEEEEccEEEEccccEEEccccEEEEEccccEEEEEEcEEEEEccEEEccccccccEEccccccccccccccccEEEEEccccEEEEcccccccccccEEEEEccEEEEEEEEEEEccccccccccccccccccccEEEEEccccccccccccccccccEEEEEccEEEccccEEEEcccccEEEEEccEEEccccccccccccccccccccccccEEEccccEEEcccccccccccccccccccccccccccccccccccccccccccccccc
cccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHccccccccccccEEEEEEccccccccccccccEEEEEEEcccEEEEEcccEEEEEccEEEEEccccEccccEEEEEEcccEEEEEEEEEEEEEcEEEEEcccccccEEEcccccccccccccccEEEEEccccEEEEcccHHccccccEEEEcccEEEEEEccEEEEEEEccEEccccccHHHcccccEEEEccEEEEEEEcccEEcccEEEEEccEEccEEEEEEcccccccEEccccEEEccccccccEEEEEccccccccccccEEccccEEEcccEEEccccccccccccccccccccHHHHHHHHHccccccccccccc
MAIPSPSLSIFLLFLMTPALIlasavpdpelvVHEVHKSINASrrnlgylscgtgnpiddcwrcdpnwekNRQRLADCAIgfgknavggrdgriyvvtdpgdydvvnpkpgtlryaviqdepLWIIFARDMTIRLKEELIMNSFktidgrgasvhiaggpcitiQYVTNIIIHGlnihdckkggnamvrdsprhfgwrtvsdgdgvsifgGTHIWvdhcslsncddglvdaihgstaitisnnfmthHDKVMllghsdtytqdkNMQVTIAFNHFGEglvqriprcrhgyfhvvnndythwemyaiggsanptinsqgnrfaapdrafskevtkhedapesewrnwnwrsegdlmvngafftasgagasssYARASslgarpsalvgpitgsAGALickkgarc
MAIPSPSLSIFLLFLMTPALILASAVPDPELVVHEVHKSInasrrnlgylsCGTGNPIDDCWRCDPNWEKNRQRLADCAIgfgknavggrdgRIYVVTDPGDYDVVNPKPGTlryaviqdeplWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAAPDRAFSKevtkhedapesewrnwnWRSEGDLMVNGAFFTASGAGASSSYARASSLGARPSAlvgpitgsagalickkgarc
MAipspslsifllflMTPALILASAVPDPELVVHEVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAAPDRAFSKEVTKHEDAPESEWRNWNWRSEGDLMVNGAFFTasgagasssyarasslgaRPSALVGPITGSAGALICKKGARC
*******LSIFLLFLMTPALILASAVPDPELVVHEVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSA********************************WRNWNWRSEGDLMVNGAFFTA************************PITGSAGALIC******
*****PS*SIFLLFLMTPALILASAVPDPELVVHEVHK**************GTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAAPDRAFSKEVTKHEDAPESEWRNWNWRSEGDLMVNGAFFTASGAGASSSYARASSLGARPSALVGPITGSAGALICKKGARC
MAIPSPSLSIFLLFLMTPALILASAVPDPELVVHEVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAAPDRAFSK************WRNWNWRSEGDLMVNGAFFTASGAGASSSYARASSLGARPSALVGPITGSAGALICKKGARC
*AIPSPSLSIFLLFLMTPALILASAVPDPELVVHEVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAAPDRAFSKEVTKHEDAPESEWRNWNWRSEGDLMVNGAFFTASG***************************************
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAIPSPSLSIFLLFLMTPALILASAVPDPELVVHEVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAAPDRAFSKEVTKHEDAPESEWRNWNWRSEGDLMVNGAFFTASGAGASSSYARASSLGARPSALVGPITGSAGALICKKGARC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query404 2.2.26 [Sep-21-2011]
Q9C5M8408 Probable pectate lyase 18 yes no 1.0 0.990 0.808 0.0
Q93Z25432 Probable pectate lyase 22 no no 0.977 0.914 0.804 0.0
Q9FXD8408 Probable pectate lyase 5 no no 0.957 0.948 0.813 0.0
Q9LTZ0412 Putative pectate lyase 11 no no 0.985 0.966 0.746 1e-177
Q944R1470 Probable pectate lyase 15 no no 0.933 0.802 0.736 1e-175
O24554401 Pectate lyase OS=Zinnia e N/A no 0.975 0.982 0.769 1e-173
P24396404 Probable pectate lyase P1 N/A no 0.948 0.948 0.759 1e-170
Q940Q1431 Probable pectate lyase 1 no no 0.938 0.879 0.728 1e-165
Q9LJ42440 Probable pectate lyase 10 no no 0.940 0.863 0.722 1e-165
Q9M8Z8416 Probable pectate lyase 8 no no 0.940 0.913 0.727 1e-164
>sp|Q9C5M8|PLY18_ARATH Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2 Back     alignment and function desciption
 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/408 (80%), Positives = 371/408 (90%), Gaps = 4/408 (0%)

Query: 1   MAIPSPSLSIFLL-FLMTPALILASAVPDPELVVHEVHKSINAS---RRNLGYLSCGTGN 56
           M + +  L I ++ FL+   L L+S VPDPE VV EVHKSINAS   RR LGYLSC TGN
Sbjct: 1   MKMQTKKLFITIVSFLLYAPLFLSSPVPDPESVVEEVHKSINASVAGRRKLGYLSCTTGN 60

Query: 57  PIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYA 116
           PIDDCWRCDP+WE++RQRLADCAIGFGKNA+GGRDGRIYVVTD G+ + V+PKPGTLR+A
Sbjct: 61  PIDDCWRCDPHWEQHRQRLADCAIGFGKNAIGGRDGRIYVVTDSGNDNPVSPKPGTLRHA 120

Query: 117 VIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLN 176
           V+QDEPLWIIF RDMTI+LKEELIMNSFKTIDGRGASVHI+GGPCITIQYVTNIIIHG++
Sbjct: 121 VVQDEPLWIIFQRDMTIQLKEELIMNSFKTIDGRGASVHISGGPCITIQYVTNIIIHGIH 180

Query: 177 IHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGST 236
           IHDCK+GGNAMVR SPRHFGWRT+SDGDGVSIFGG+H+WVDHCS SNC+DGL+DAI GST
Sbjct: 181 IHDCKQGGNAMVRSSPRHFGWRTISDGDGVSIFGGSHVWVDHCSFSNCEDGLIDAIMGST 240

Query: 237 AITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNN 296
           AIT+SNN MTHHDKVMLLGHSDTY++DKNMQVTIAFNHFGEGLVQR+PRCRHGYFHVVNN
Sbjct: 241 AITLSNNHMTHHDKVMLLGHSDTYSRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNN 300

Query: 297 DYTHWEMYAIGGSANPTINSQGNRFAAPDRAFSKEVTKHEDAPESEWRNWNWRSEGDLMV 356
           DYTHWEMYAIGGSANPTINSQGNRF AP+  FSKEVTKHEDAPESEW+ WNWRS GDL++
Sbjct: 301 DYTHWEMYAIGGSANPTINSQGNRFLAPNIRFSKEVTKHEDAPESEWKRWNWRSSGDLLL 360

Query: 357 NGAFFTASGAGASSSYARASSLGARPSALVGPITGSAGALICKKGARC 404
           NGAFFT SG  ASSSYA+ASSLGA+PS+LVGP+T ++GAL C+KG+RC
Sbjct: 361 NGAFFTPSGGAASSSYAKASSLGAKPSSLVGPLTSTSGALNCRKGSRC 408

Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: 2
>sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1 Back     alignment and function description
>sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2 Back     alignment and function description
>sp|Q9LTZ0|PLY11_ARATH Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=3 SV=2 Back     alignment and function description
>sp|Q944R1|PLY15_ARATH Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1 Back     alignment and function description
>sp|O24554|PLY_ZINEL Pectate lyase OS=Zinnia elegans PE=1 SV=1 Back     alignment and function description
>sp|P24396|PLY18_SOLLC Probable pectate lyase P18 OS=Solanum lycopersicum GN=9612 PE=2 SV=1 Back     alignment and function description
>sp|Q940Q1|PLY1_ARATH Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2 Back     alignment and function description
>sp|Q9LJ42|PLY10_ARATH Probable pectate lyase 10 OS=Arabidopsis thaliana GN=At3g24670 PE=2 SV=2 Back     alignment and function description
>sp|Q9M8Z8|PLY8_ARATH Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query404
224136005403 predicted protein [Populus trichocarpa] 0.960 0.962 0.894 0.0
224121874403 predicted protein [Populus trichocarpa] 0.960 0.962 0.886 0.0
345104285411 pectate lyase [Gossypium laxum] gi|34510 0.938 0.922 0.897 0.0
345104283411 pectate lyase [Gossypium thurberi] gi|34 0.938 0.922 0.894 0.0
284504572411 pectate lyase [Gossypium raimondii] 0.938 0.922 0.891 0.0
284504570411 pectate lyase [Gossypium herbaceum] 0.938 0.922 0.891 0.0
345104319411 pectate lyase [Gossypium davidsonii] gi| 0.938 0.922 0.891 0.0
345104325411 pectate lyase [Gossypium gossypioides] 0.938 0.922 0.889 0.0
345104327411 pectate lyase [Gossypium lobatum] 0.938 0.922 0.894 0.0
345104287411 pectate lyase [Gossypium schwendimanii] 0.950 0.934 0.885 0.0
>gi|224136005|ref|XP_002322215.1| predicted protein [Populus trichocarpa] gi|222869211|gb|EEF06342.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/388 (89%), Positives = 372/388 (95%)

Query: 17  TPALILASAVPDPELVVHEVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLA 76
           TPALI +S V DPELVV EVH++INASRR LGYLSCGTGNPIDDCWRCDPNWEKNRQRLA
Sbjct: 16  TPALISSSPVQDPELVVQEVHRAINASRRKLGYLSCGTGNPIDDCWRCDPNWEKNRQRLA 75

Query: 77  DCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLK 136
           DCAIGFGKNA+GGRDG+IYVVTD G+ D VNP+PGTLR+AVIQ+EPLWIIFARDMTI+LK
Sbjct: 76  DCAIGFGKNAIGGRDGKIYVVTDSGNDDPVNPRPGTLRHAVIQEEPLWIIFARDMTIQLK 135

Query: 137 EELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFG 196
           EELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGL+IHDCK+GGNAMVRDSP+HFG
Sbjct: 136 EELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLHIHDCKQGGNAMVRDSPKHFG 195

Query: 197 WRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGH 256
           WRTVSDGDGVSIFGGTH+WVDH SLSNC+DGLVDAIHGS+AITISNN+MTHHDKVMLLGH
Sbjct: 196 WRTVSDGDGVSIFGGTHVWVDHNSLSNCNDGLVDAIHGSSAITISNNYMTHHDKVMLLGH 255

Query: 257 SDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINS 316
           SD+YTQDKNMQVTIAFNHFGEGLVQR+PRCRHGYFHVVNNDYTHWEMYAIGGSANPTINS
Sbjct: 256 SDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINS 315

Query: 317 QGNRFAAPDRAFSKEVTKHEDAPESEWRNWNWRSEGDLMVNGAFFTASGAGASSSYARAS 376
           QGNRF APD  FSKEVTKHEDAPESEW++WNWRSEGDL++NGAFFTASGAGASSSYARAS
Sbjct: 316 QGNRFVAPDIRFSKEVTKHEDAPESEWKHWNWRSEGDLLMNGAFFTASGAGASSSYARAS 375

Query: 377 SLGARPSALVGPITGSAGALICKKGARC 404
           SLGARPS+LVG IT  AGAL C+KGARC
Sbjct: 376 SLGARPSSLVGTITVGAGALGCRKGARC 403

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224121874|ref|XP_002318694.1| predicted protein [Populus trichocarpa] gi|222859367|gb|EEE96914.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|345104285|gb|AEN70964.1| pectate lyase [Gossypium laxum] gi|345104323|gb|AEN70983.1| pectate lyase [Gossypium aridum] Back     alignment and taxonomy information
>gi|345104283|gb|AEN70963.1| pectate lyase [Gossypium thurberi] gi|345104289|gb|AEN70966.1| pectate lyase [Gossypium turneri] gi|345104315|gb|AEN70979.1| pectate lyase [Gossypium armourianum] gi|345104317|gb|AEN70980.1| pectate lyase [Gossypium harknessii] gi|345104329|gb|AEN70986.1| pectate lyase [Gossypium trilobum] Back     alignment and taxonomy information
>gi|284504572|gb|ADB90476.1| pectate lyase [Gossypium raimondii] Back     alignment and taxonomy information
>gi|284504570|gb|ADB90475.1| pectate lyase [Gossypium herbaceum] Back     alignment and taxonomy information
>gi|345104319|gb|AEN70981.1| pectate lyase [Gossypium davidsonii] gi|345104321|gb|AEN70982.1| pectate lyase [Gossypium klotzschianum] Back     alignment and taxonomy information
>gi|345104325|gb|AEN70984.1| pectate lyase [Gossypium gossypioides] Back     alignment and taxonomy information
>gi|345104327|gb|AEN70985.1| pectate lyase [Gossypium lobatum] Back     alignment and taxonomy information
>gi|345104287|gb|AEN70965.1| pectate lyase [Gossypium schwendimanii] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query404
TAIR|locus:2121914408 AT4G24780 [Arabidopsis thalian 0.952 0.943 0.801 9e-180
TAIR|locus:2161992432 AT5G63180 [Arabidopsis thalian 0.948 0.886 0.789 4.1e-175
TAIR|locus:2008550408 AT1G67750 [Arabidopsis thalian 0.962 0.953 0.773 5.3e-175
TAIR|locus:2086656412 AT3G27400 [Arabidopsis thalian 0.948 0.929 0.742 1.8e-165
TAIR|locus:2005487470 AT4G13710 [Arabidopsis thalian 0.933 0.802 0.699 2.4e-154
TAIR|locus:2197808431 AT1G04680 [Arabidopsis thalian 0.938 0.879 0.691 1.7e-153
TAIR|locus:2154384417 AT5G48900 [Arabidopsis thalian 0.940 0.911 0.696 8.5e-152
TAIR|locus:2093131440 AT3G24670 [Arabidopsis thalian 0.940 0.863 0.685 1.4e-151
TAIR|locus:2077622416 AT3G07010 [Arabidopsis thalian 0.940 0.913 0.693 2.3e-151
TAIR|locus:2093761452 AT3G24230 [Arabidopsis thalian 0.938 0.838 0.663 2.6e-143
TAIR|locus:2121914 AT4G24780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1745 (619.3 bits), Expect = 9.0e-180, P = 9.0e-180
 Identities = 311/388 (80%), Positives = 346/388 (89%)

Query:    20 LILASAVPDPELVVHEVHKSINAS---RRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLA 76
             L L+S VPDPE VV EVHKSINAS   RR LGYLSC TGNPIDDCWRCDP+WE++RQRLA
Sbjct:    21 LFLSSPVPDPESVVEEVHKSINASVAGRRKLGYLSCTTGNPIDDCWRCDPHWEQHRQRLA 80

Query:    77 DCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLK 136
             DCAIGFGKNA+GGRDGRIYVVTD G+ + V+PKPGTLR+AV+QDEPLWIIF RDMTI+LK
Sbjct:    81 DCAIGFGKNAIGGRDGRIYVVTDSGNDNPVSPKPGTLRHAVVQDEPLWIIFQRDMTIQLK 140

Query:   137 EELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFG 196
             EELIMNSFKTIDGRGASVHI+GGPCITIQYVTNIIIHG++IHDCK+GGNAMVR SPRHFG
Sbjct:   141 EELIMNSFKTIDGRGASVHISGGPCITIQYVTNIIIHGIHIHDCKQGGNAMVRSSPRHFG 200

Query:   197 WRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGH 256
             WRT+SDGDGVSIFGG+H+WVDHCS SNC+DGL+DAI GSTAIT+SNN MTHHDKVMLLGH
Sbjct:   201 WRTISDGDGVSIFGGSHVWVDHCSFSNCEDGLIDAIMGSTAITLSNNHMTHHDKVMLLGH 260

Query:   257 SDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINS 316
             SDTY++DKNMQVTIAFNHFGEGLVQR+PRCRHGYFHVVNNDYTHWEMYAIGGSANPTINS
Sbjct:   261 SDTYSRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINS 320

Query:   317 QGNRFAAPDRAFSKEVTKHEDAPESEWRNWNWRSEGDLMVNGAFFTXXXXXXXXXXXXXX 376
             QGNRF AP+  FSKEVTKHEDAPESEW+ WNWRS GDL++NGAFFT              
Sbjct:   321 QGNRFLAPNIRFSKEVTKHEDAPESEWKRWNWRSSGDLLLNGAFFTPSGGAASSSYAKAS 380

Query:   377 XXXXRPSALVGPITGSAGALICKKGARC 404
                 +PS+LVGP+T ++GAL C+KG+RC
Sbjct:   381 SLGAKPSSLVGPLTSTSGALNCRKGSRC 408
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0016829 "lyase activity" evidence=ISS
GO:0030570 "pectate lyase activity" evidence=ISS
GO:0016020 "membrane" evidence=IDA
GO:0006949 "syncytium formation" evidence=RCA
TAIR|locus:2161992 AT5G63180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008550 AT1G67750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086656 AT3G27400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005487 AT4G13710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197808 AT1G04680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154384 AT5G48900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093131 AT3G24670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077622 AT3G07010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093761 AT3G24230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LTZ0PLY11_ARATH4, ., 2, ., 2, ., 20.74680.98510.9660nono
P40972PLY_TOBAC4, ., 2, ., 2, ., 20.52630.94800.9647N/Ano
P40973PLY_LILLO4, ., 2, ., 2, ., 20.56440.93810.8732N/Ano
P15722PLY59_SOLLC4, ., 2, ., 2, ., 20.58910.89850.8084N/Ano
Q93Z25PLY22_ARATH4, ., 2, ., 2, ., 20.80450.97770.9143nono
Q9FXD8PLY5_ARATH4, ., 2, ., 2, ., 20.81390.95790.9485nono
O24554PLY_ZINEL4, ., 2, ., 2, ., 20.76900.97520.9825N/Ano
P24396PLY18_SOLLC4, ., 2, ., 2, ., 20.75960.94800.9480N/Ano
Q9LJ42PLY10_ARATH4, ., 2, ., 2, ., 20.72250.94050.8636nono
Q9M8Z8PLY8_ARATH4, ., 2, ., 2, ., 20.72770.94050.9134nono
Q9C5M8PLY18_ARATH4, ., 2, ., 2, ., 20.80881.00.9901yesno
Q940Q1PLY1_ARATH4, ., 2, ., 2, ., 20.72820.93810.8793nono
Q93WF1PLY20_ARATH4, ., 2, ., 2, ., 20.72770.94050.9112nono
P15721PLY56_SOLLC4, ., 2, ., 2, ., 20.51840.92570.9396N/Ano
Q944R1PLY15_ARATH4, ., 2, ., 2, ., 20.73620.93310.8021nono
Q9SVQ6PLY14_ARATH4, ., 2, ., 2, ., 20.73100.94050.8675nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.20.983
4th Layer4.2.2.20.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query404
smart00656190 smart00656, Amb_all, Amb_all domain 2e-82
pfam00544200 pfam00544, Pec_lyase_C, Pectate lyase 8e-76
COG3866345 COG3866, PelB, Pectate lyase [Carbohydrate transpo 2e-25
>gnl|CDD|214765 smart00656, Amb_all, Amb_all domain Back     alignment and domain information 
 Score =  250 bits (640), Expect = 2e-82
 Identities = 103/207 (49%), Positives = 125/207 (60%), Gaps = 28/207 (13%)

Query: 130 DMTIRLK--EELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAM 187
           D+TI L     +I+NS KTIDGRG+ V I GG  +TI+ V+N+II  L IHD K      
Sbjct: 1   DVTITLDNAGTIIINSNKTIDGRGSKVEIKGG-GLTIKSVSNVIIRNLTIHDPKPVY--- 56

Query: 188 VRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNC---------DDGLVDAIHGSTAI 238
                        SDGD +SI G +++W+DH SLS C          DGL+D  +GST +
Sbjct: 57  ------------GSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYV 104

Query: 239 TISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDY 298
           TISNN+  +H KVMLLGHSD+ T D  M+VTIA N+FG  L QR PR R GY HV NN Y
Sbjct: 105 TISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFG-NLRQRAPRVRFGYVHVYNNYY 163

Query: 299 THWEMYAIGGSANPTINSQGNRFAAPD 325
           T W  YAIGG    TI S+GN F AP 
Sbjct: 164 TGWTSYAIGGRMGATILSEGNYFEAPI 190

Length = 190
>gnl|CDD|215986 pfam00544, Pec_lyase_C, Pectate lyase Back     alignment and domain information
>gnl|CDD|226384 COG3866, PelB, Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 404
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 100.0
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 100.0
smart00656190 Amb_all Amb_all domain. 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.87
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.2
PLN02218431 polygalacturonase ADPG 98.05
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.9
PLN03003456 Probable polygalacturonase At3g15720 97.84
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.77
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.74
PLN02793443 Probable polygalacturonase 97.7
PLN02155394 polygalacturonase 97.68
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 97.65
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 97.51
PLN03010409 polygalacturonase 97.36
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.31
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 97.31
PLN02218431 polygalacturonase ADPG 97.29
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.2
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.14
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.04
PLN03003456 Probable polygalacturonase At3g15720 96.76
PLN02155394 polygalacturonase 96.71
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 96.59
PLN02197588 pectinesterase 96.57
PLN03010409 polygalacturonase 96.5
PLN02480343 Probable pectinesterase 96.5
smart00656190 Amb_all Amb_all domain. 96.37
PLN02793443 Probable polygalacturonase 96.31
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 96.21
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 96.18
PLN02188404 polygalacturonase/glycoside hydrolase family prote 95.77
PLN02682369 pectinesterase family protein 95.56
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 95.01
PLN02176340 putative pectinesterase 95.01
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 94.82
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 94.48
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 94.4
PLN02416541 probable pectinesterase/pectinesterase inhibitor 94.31
PLN02170529 probable pectinesterase/pectinesterase inhibitor 94.13
PLN02432293 putative pectinesterase 93.91
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 93.68
PLN02301548 pectinesterase/pectinesterase inhibitor 93.19
PLN02773317 pectinesterase 92.98
PLN02488509 probable pectinesterase/pectinesterase inhibitor 92.92
PLN02506537 putative pectinesterase/pectinesterase inhibitor 92.68
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 92.59
PLN02304379 probable pectinesterase 92.38
PLN02217670 probable pectinesterase/pectinesterase inhibitor 92.27
PLN02916502 pectinesterase family protein 92.23
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 92.2
PLN02314586 pectinesterase 92.18
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 92.05
PLN02313587 Pectinesterase/pectinesterase inhibitor 92.04
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 92.03
PLN02201520 probable pectinesterase/pectinesterase inhibitor 91.47
PLN02484587 probable pectinesterase/pectinesterase inhibitor 91.39
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 91.3
PLN02634359 probable pectinesterase 91.26
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 91.12
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 90.56
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 90.53
PLN02665366 pectinesterase family protein 90.06
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 89.5
PLN02497331 probable pectinesterase 88.95
PLN02468565 putative pectinesterase/pectinesterase inhibitor 88.83
PF0443156 Pec_lyase_N: Pectate lyase, N terminus; InterPro: 86.63
PLN02671359 pectinesterase 86.22
PRK10531422 acyl-CoA thioesterase; Provisional 86.0
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 85.53
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-56  Score=433.13  Aligned_cols=270  Identities=31%  Similarity=0.384  Sum_probs=220.9

Q ss_pred             CCCCCCCCcEEEEcCCCCCCCCCCCchhHHHHhhcCCCeEEEEccceEEEeC------ceeeeccCeeEeccCcceEEeC
Q 015569           85 NAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLK------EELIMNSFKTIDGRGASVHIAG  158 (404)
Q Consensus        85 ~ttGG~gG~vy~VT~~~D~~~~~p~pGsLR~av~~~~P~~IvF~~~g~I~L~------~~L~v~snkTI~G~ga~~~I~~  158 (404)
                      +||||.+|++++|++.+|          |..+++..+|.++|.-+.|+|++.      .+|.+.|||||.|.+++++|. 
T Consensus        47 GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~-  115 (345)
T COG3866          47 GTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLV-  115 (345)
T ss_pred             CcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEE-
Confidence            689999999999999998          899999999996566667899887      467789999999999999999 


Q ss_pred             CceEEEeeeceEEEEceEEeecccCCCcccccCCCCcCCccccCCCcEEE-eCCeeEEEeeeeeeC--------CCCCee
Q 015569          159 GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSI-FGGTHIWVDHCSLSN--------CDDGLV  229 (404)
Q Consensus       159 G~gi~i~~a~NVIIrnL~i~~~~~g~~~~i~~s~~~~g~~~~~~~DaIsi-~gs~nVWIDHcS~s~--------~~Dgli  229 (404)
                      |++|.|+.+.|||||||+|++...++                ...|+|+| .+++|||||||+|+.        ..||++
T Consensus       116 g~gl~i~~a~NVIirNltf~~~~~~d----------------~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~  179 (345)
T COG3866         116 GGGLKIRDAGNVIIRNLTFEGFYQGD----------------PNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLV  179 (345)
T ss_pred             eceEEEEeCCcEEEEeeEEEeeccCC----------------CCCCcEEeccCCeEEEEEeeEeccccccccccCCCccE
Confidence            77999999999999999999875332                12699999 579999999999999        789999


Q ss_pred             eeecCCeeEEEEcceecccCeeeeecCCCCc-cCCCcceEEEEeeeeCCCCcCCCccccCCEEEEEcCeeeCCc--ceee
Q 015569          230 DAIHGSTAITISNNFMTHHDKVMLLGHSDTY-TQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWE--MYAI  306 (404)
Q Consensus       230 Dv~~gs~~VTISnn~f~~H~k~~LiG~sd~~-~~d~~~~vTi~~N~f~~~~~~R~Pr~R~G~~HvvNN~y~~w~--~yai  306 (404)
                      |+++++++||||||+|++|+|.+|+|.+|+. .+|++.+||+||||| +++.||+||+|||++||+||||....  .||+
T Consensus       180 Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~  258 (345)
T COG3866         180 DIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAI  258 (345)
T ss_pred             EeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCceEeeEEEEeccccccCcccceEE
Confidence            9999999999999999999999999999984 457889999999999 79999999999999999999999654  4566


Q ss_pred             ccCCCceeeeeccEEeCCCCCcccceecccCCCCCccCCCeeeecCceEEeceEEecCCCCC------CCCCCCCCceee
Q 015569          307 GGSANPTINSQGNRFAAPDRAFSKEVTKHEDAPESEWRNWNWRSEGDLMVNGAFFTASGAGA------SSSYARASSLGA  380 (404)
Q Consensus       307 gg~~~~~i~~egN~F~~~~~~~~k~vt~~~~~~~~~~~~~~w~s~gd~~~nG~~f~~sg~~~------~~~~~~~~~~~~  380 (404)
                      +-+..++|++|+|||+....+...--+++.        +.+|.-     -.|++|..|+...      ...++..|+|++
T Consensus       259 ~iG~~AkiyvE~NyF~~~~~~~~f~dt~~~--------~GY~~~-----d~gsy~~~s~~~~~~~~G~~w~ps~~Y~Ytv  325 (345)
T COG3866         259 TIGTSAKIYVENNYFENGSEGLGFLDTKGT--------SGYANQ-----DSGSYLNSSKSMSVRAGGVTWNPSSYYSYTV  325 (345)
T ss_pred             eeccceEEEEecceeccCCCCceeeecCCc--------cceEEe-----ccCceecccCCcccccCCccCCCCCCccccc
Confidence            555559999999999997544321112221        122221     2355555555432      235677889999


Q ss_pred             CCC-CcccchhcccCC
Q 015569          381 RPS-ALVGPITGSAGA  395 (404)
Q Consensus       381 ~~~-~~v~~~t~~AG~  395 (404)
                      +|. .+++.||++||+
T Consensus       326 d~~~dVks~Vt~yAGa  341 (345)
T COG3866         326 DPPEDVKSFVTNYAGA  341 (345)
T ss_pred             CChHHhhhhhhccccc
Confidence            965 588889999995

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query404
1pxz_A346 1.7 Angstrom Crystal Structure Of Jun A 1, The Majo 8e-88
3zsc_A340 Catalytic Function And Substrate Recognition Of The 6e-16
1bn8_A420 Bacillus Subtilis Pectate Lyase Length = 420 2e-14
1vbl_A416 Structure Of The Thermostable Pectate Lyase Pl 47 L 3e-14
2bsp_A420 Bacillus Subtilis Pectate Lyase R279k Mutant Length 5e-14
3krg_A399 Structural Insights Into Substrate Specificity And 7e-14
1ooc_A361 Mutations In The T1.5 Loop Of Pectate Lyase A Lengt 9e-14
1jrg_A361 Crystal Structure Of The R3 Form Of Pectate Lyase A 1e-13
2nzm_A399 Hexasaccharide I Bound To Bacillus Subtilis Pectate 1e-13
1pcl_A355 Unusual Structural Features In The Parallel Beta-He 8e-11
2qx3_A330 Structure Of Pectate Lyase Ii From Xanthomonas Camp 3e-08
2qxz_A330 Pectate Lyase R236f From Xanthomonas Campestris Len 4e-08
2qy1_A330 Pectate Lyase A31g/r236f From Xanthomonas Campestri 4e-08
3vmv_A326 Crystal Structure Of Pectate Lyase Bsp165pela From 4e-06
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen Length = 346 Back     alignment and structure 
Iteration: 1

 Score =  320 bits (821), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 162/315 (51%), Positives = 213/315 (67%), Gaps = 16/315 (5%)
Query: 56  NPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRY 115
           NPID CWR D NW++NR +LADCA+GFG + +GG+ G  Y VT   D + VNP PGTLRY
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRY 60
Query: 116 AVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIA-GGPCITIQYVTNIIIHG 174
              +++ LWIIF+++M I+LK  L +   KTIDGRGA VH+  GGPC+ ++ V+++I+H 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120
Query: 175 LNIHDCKKG--GNAMVRDS----PRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGL 228
           L+IH C     G+ +V +S    P H       DGD +++   T+ W+DH SLS+C DGL
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVH-----AQDGDAITMRNVTNAWIDHNSLSDCSDGL 175
Query: 229 VDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRH 288
           +D   GST ITISNN   +H KVMLLGH DTY  DK+M+VT+AFN FG    QR+PR R+
Sbjct: 176 IDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARY 235
Query: 289 GYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAAPDRAFSKEVTKHE--DAPESEWRNW 346
           G  HV NN+Y  W +YAIGGS+NPTI S+GN F AP  ++ KEVTK    ++P S   NW
Sbjct: 236 GLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESP-SACANW 294
Query: 347 NWRSEGDLMVNGAFF 361
            WRS  D  +NGA+F
Sbjct: 295 VWRSTRDAFINGAYF 309
>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima Length = 340 Back     alignment and structure
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase Length = 420 Back     alignment and structure
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 Length = 416 Back     alignment and structure
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant Length = 420 Back     alignment and structure
>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase Length = 399 Back     alignment and structure
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A Length = 361 Back     alignment and structure
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi Length = 361 Back     alignment and structure
>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase Length = 399 Back     alignment and structure
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases Length = 355 Back     alignment and structure
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 Length = 330 Back     alignment and structure
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 Length = 326 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query404
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 1e-142
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 4e-96
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 2e-88
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 2e-85
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 3e-84
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 2e-72
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 2e-71
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 2e-71
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 3e-69
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 8e-67
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 7e-62
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 3e-07
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 5e-07
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 3e-05
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 1e-04
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 1e-04
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 5e-04
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Length = 346 Back     alignment and structure
 Score =  408 bits (1049), Expect = e-142
 Identities = 163/345 (47%), Positives = 215/345 (62%), Gaps = 5/345 (1%)

Query: 56  NPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRY 115
           NPID CWR D NW++NR +LADCA+GFG + +GG+ G  Y VT   D + VNP PGTLRY
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRY 60

Query: 116 AVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAG-GPCITIQYVTNIIIHG 174
              +++ LWIIF+++M I+LK  L +   KTIDGRGA VH+   GPC+ ++ V+++I+H 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120

Query: 175 LNIHDCKKGGNAMVRDSPR-HFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIH 233
           L+IH C       V  S           DGD +++   T+ W+DH SLS+C DGL+D   
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180

Query: 234 GSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHV 293
           GST ITISNN   +H KVMLLGH DTY  DK+M+VT+AFN FG    QR+PR R+G  HV
Sbjct: 181 GSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHV 240

Query: 294 VNNDYTHWEMYAIGGSANPTINSQGNRFAAPDRAFSKEVTKHEDA-PESEWRNWNWRSEG 352
            NN+Y  W +YAIGGS+NPTI S+GN F AP  ++ KEVTK       S   NW WRS  
Sbjct: 241 ANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTR 300

Query: 353 DLMVNGAFFTASGAGAS-SSYARASSLGARPSALVGPITGSAGAL 396
           D  +NGA+F +SG     + Y    +           +T +AG +
Sbjct: 301 DAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTKNAGVV 345
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Length = 340 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Length = 361 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Length = 355 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Length = 326 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Length = 330 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Length = 359 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Length = 399 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Length = 353 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Length = 416 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Length = 359 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query404
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 100.0
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 100.0
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 100.0
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 100.0
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 100.0
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 100.0
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 100.0
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 100.0
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 100.0
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 100.0
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 98.43
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 98.39
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.24
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.98
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.92
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.85
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.85
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.81
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.81
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.81
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.79
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.77
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.76
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.76
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.68
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 97.65
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.64
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.61
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.6
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.58
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.57
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.42
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 97.36
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.21
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.18
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.17
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.13
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.02
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 96.89
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 96.87
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.77
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 96.77
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 96.75
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 96.72
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 96.69
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 96.67
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 96.6
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.58
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.52
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.46
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 96.43
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.34
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 96.34
2inu_A410 Insulin fructotransferase; right-handed parallel b 96.27
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 96.17
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 96.16
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.06
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 95.85
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 95.8
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 95.63
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 95.43
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 95.26
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 93.76
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 91.54
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 84.88
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
Probab=100.00  E-value=4.1e-104  Score=792.86  Aligned_cols=342  Identities=47%  Similarity=0.876  Sum_probs=327.3

Q ss_pred             CCCCcceeccCccccccccccccCcccccCCCCCCCCCcEEEEcCCCCCCCCCCCchhHHHHhhcCCCeEEEEccceEEE
Q 015569           55 GNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIR  134 (404)
Q Consensus        55 ~n~id~cwr~~~~w~~~r~~la~~a~GfG~~ttGG~gG~vy~VT~~~D~~~~~p~pGsLR~av~~~~P~~IvF~~~g~I~  134 (404)
                      +||||+||||+|+|+.+||+||+||+|||++||||+||++|+||+++| ++++|+|||||+||++++||||||+++|+|+
T Consensus         1 ~~~~~~c~~~~~~w~~~~~~~~~~a~Gfg~~ttGG~gG~v~~VT~~~d-~~~~~~~GsLr~av~~~~P~~Ivf~~~g~I~   79 (346)
T 1pxz_A            1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIK   79 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCC-CTTSCCTTSHHHHHHCSSCEEEEESSCEEEC
T ss_pred             CCccchhhccCcchhhhhhhcccCCccccCCCcCCCCccEEEECChHH-cccccCcchhHHHhccCCCeEEEEcCCcEEe
Confidence            699999999999999999999999999999999999999999999977 6899999999999999999999999999999


Q ss_pred             eCceeeeccCeeEeccCcceEEeC-CceEEEeeeceEEEEceEEeecccCCCccc-ccCCCCcCCccccCCCcEEEeCCe
Q 015569          135 LKEELIMNSFKTIDGRGASVHIAG-GPCITIQYVTNIIIHGLNIHDCKKGGNAMV-RDSPRHFGWRTVSDGDGVSIFGGT  212 (404)
Q Consensus       135 L~~~L~v~snkTI~G~ga~~~I~~-G~gi~i~~a~NVIIrnL~i~~~~~g~~~~i-~~s~~~~g~~~~~~~DaIsi~gs~  212 (404)
                      |+++|+|.|||||+|||++++|.+ |+||++++++|||||||+|++++|++++.| |++++|+|.+...++|||+|++++
T Consensus        80 l~~~l~V~sn~TI~G~ga~~~i~G~G~gi~i~~a~NVIIrnl~i~~~~~~~~~~I~~~~~~~~g~~~~~~~DaI~i~~s~  159 (346)
T 1pxz_A           80 LKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVT  159 (346)
T ss_dssp             CSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCE
T ss_pred             cCccEEecCCeEEEccCCceEEeCCcceEEEEccCCEEEEeeEEEeeccCCCceEEeccCcccccccCCCCCEEEEecCc
Confidence            999999999999999999999996 689999999999999999999999888877 999999998878899999999999


Q ss_pred             eEEEeeeeeeCCCCCeeeeecCCeeEEEEcceecccCeeeeecCCCCccCCCcceEEEEeeeeCCCCcCCCccccCCEEE
Q 015569          213 HIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFH  292 (404)
Q Consensus       213 nVWIDHcS~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R~Pr~R~G~~H  292 (404)
                      |||||||+|+|+.||++|+++++++||||||+|++|+|+||+|++|+.+.|+.|++|||||+|++++.+||||+|+|++|
T Consensus       160 nVwIDHcs~s~~~Dg~id~~~~s~~vTISnn~f~~H~k~~l~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r~g~~h  239 (346)
T 1pxz_A          160 NAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVH  239 (346)
T ss_dssp             EEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEE
T ss_pred             eEEEEeeEEecCCCCcEeeccCcceEEEEeeEEecCCceeEECCCCccccCCceEEEEEeeEEeCCccccCccEecceEE
Confidence            99999999999999999999999999999999999999999999998888888999999999977899999999999999


Q ss_pred             EEcCeeeCCcceeeccCCCceeeeeccEEeCCCCCcccceecccCCC-CCccCCCeeeecCceEEeceEEecCCCCCCC-
Q 015569          293 VVNNDYTHWEMYAIGGSANPTINSQGNRFAAPDRAFSKEVTKHEDAP-ESEWRNWNWRSEGDLMVNGAFFTASGAGASS-  370 (404)
Q Consensus       293 vvNN~y~~w~~yaigg~~~~~i~~egN~F~~~~~~~~k~vt~~~~~~-~~~~~~~~w~s~gd~~~nG~~f~~sg~~~~~-  370 (404)
                      ++||||++|.+|++++++++++++|+|||++++++..|++++|.+++ +.+|++|+|+++||+|+||++|++||..... 
T Consensus       240 v~NN~~~~~~~~~i~~~~~~~i~~egN~F~~~~~~~~k~v~~~~~~~~~~~~~~~~~~~~g~~~~nG~~~~~s~~~~~~~  319 (346)
T 1pxz_A          240 VANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEETN  319 (346)
T ss_dssp             EESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSCEEEESCEEETTCBCCCBSCCCCCC
T ss_pred             EEeeEEEcccceEEeccCCceEEEECCEEECCCCCcccccEEEeccCCccccccccEecCCCeEEeceEecCCCCCccCC
Confidence            99999999999999999999999999999999999899999998776 6789999999999999999999999987654 


Q ss_pred             CCCCCCceeeCCCCcccchhcccCCCC
Q 015569          371 SYARASSLGARPSALVGPITGSAGALI  397 (404)
Q Consensus       371 ~~~~~~~~~~~~~~~v~~~t~~AG~l~  397 (404)
                      +|+++|+|+++|+++|++||++||+|.
T Consensus       320 ~y~~~~~~~~~~~~~v~~~~~~aG~~~  346 (346)
T 1pxz_A          320 IYNSNEAFKVENGNAAPQLTKNAGVVT  346 (346)
T ss_dssp             CCCTTTCCCCCCGGGHHHHTTTCSSCC
T ss_pred             CCCcccccccCCHHHHHHHhhhccCCC
Confidence            599999999999999999999999994
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 404
d1pxza_346 b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark 1e-148
d1pe9a_361 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 7e-87
d1qcxa_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 4e-70
d1bn8a_399 b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [Ta 6e-65
d1idka_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 3e-62
d1o88a_353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 2e-41
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-06
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 3e-04
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 7e-04
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Length = 346 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

 Score =  421 bits (1083), Expect = e-148
 Identities = 163/345 (47%), Positives = 215/345 (62%), Gaps = 5/345 (1%)

Query: 56  NPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRY 115
           NPID CWR D NW++NR +LADCA+GFG + +GG+ G  Y VT   D + VNP PGTLRY
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRY 60

Query: 116 AVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAG-GPCITIQYVTNIIIHG 174
              +++ LWIIF+++M I+LK  L +   KTIDGRGA VH+   GPC+ ++ V+++I+H 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120

Query: 175 LNIHDCKKGGNAMVRDSP-RHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIH 233
           L+IH C       V  S           DGD +++   T+ W+DH SLS+C DGL+D   
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180

Query: 234 GSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHV 293
           GST ITISNN   +H KVMLLGH DTY  DK+M+VT+AFN FG    QR+PR R+G  HV
Sbjct: 181 GSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHV 240

Query: 294 VNNDYTHWEMYAIGGSANPTINSQGNRFAAPDRAFSKEVTKHEDA-PESEWRNWNWRSEG 352
            NN+Y  W +YAIGGS+NPTI S+GN F AP  ++ KEVTK       S   NW WRS  
Sbjct: 241 ANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTR 300

Query: 353 DLMVNGAFFTASGAGAS-SSYARASSLGARPSALVGPITGSAGAL 396
           D  +NGA+F +SG     + Y    +           +T +AG +
Sbjct: 301 DAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTKNAGVV 345
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Length = 361 Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Length = 399 Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query404
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 100.0
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 100.0
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 100.0
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 100.0
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 100.0
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 100.0
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 97.99
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 97.93
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 97.88
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.66
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.53
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 97.53
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.25
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.2
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.16
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 97.01
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 96.92
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.88
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 96.77
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 96.64
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 96.53
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 96.48
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 96.41
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 96.06
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 96.0
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 95.78
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 95.63
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 95.56
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 94.29
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 93.86
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 92.88
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 91.76
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 91.08
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 86.69
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=100.00  E-value=1.7e-97  Score=742.44  Aligned_cols=342  Identities=48%  Similarity=0.876  Sum_probs=313.3

Q ss_pred             CCCCcceeccCccccccccccccCcccccCCCCCCCCCcEEEEcCCCCCCCCCCCchhHHHHhhcCCCeEEEEccceEEE
Q 015569           55 GNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIR  134 (404)
Q Consensus        55 ~n~id~cwr~~~~w~~~r~~la~~a~GfG~~ttGG~gG~vy~VT~~~D~~~~~p~pGsLR~av~~~~P~~IvF~~~g~I~  134 (404)
                      .||||+||||||||+.+||+||+||||||++||||+||+||+||+++| ++++|+|||||+|++|++||||||+++|+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~a~Gfg~~ttGG~gG~v~~Vt~l~D-~~~~~g~GsLr~a~~~~~pr~IvF~vsg~I~   79 (346)
T d1pxza_           1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIK   79 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCC-CTTSCCTTSHHHHHHCSSCEEEEESSCEEEC
T ss_pred             CCCcccccCCCCCHHHHHHhhhhccccccCCCcCCCCceEEEecChhh-ccccCCCccHHHHhhCCCCeEEEEeccEEEe
Confidence            499999999999999999999999999999999999999999999988 6899999999999999999999999999999


Q ss_pred             eCceeeeccCeeEeccCcceEEeC-CceEEEeeeceEEEEceEEeecccCCCcccccCCC-CcCCccccCCCcEEEeCCe
Q 015569          135 LKEELIMNSFKTIDGRGASVHIAG-GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPR-HFGWRTVSDGDGVSIFGGT  212 (404)
Q Consensus       135 L~~~L~v~snkTI~G~ga~~~I~~-G~gi~i~~a~NVIIrnL~i~~~~~g~~~~i~~s~~-~~g~~~~~~~DaIsi~gs~  212 (404)
                      |+++|.|+|||||+|||++++|.+ |.+|.++.++|||||||+||++++...+.++.++. +.+....+++|+|+|++++
T Consensus        80 l~~~L~v~sn~TI~G~ga~~~i~~~G~~i~i~~~~NVIirnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~gDai~i~~s~  159 (346)
T d1pxza_          80 LKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVT  159 (346)
T ss_dssp             CSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCE
T ss_pred             ccceEEeCCCceEEccCCCceEeeecceEEEecCCEEEEeceEEecCcccCCcccccccccCccccccCCCceeeeecCc
Confidence            999999999999999999999885 66799999999999999999988766555433322 2222335789999999999


Q ss_pred             eEEEeeeeeeCCCCCeeeeecCCeeEEEEcceecccCeeeeecCCCCccCCCcceEEEEeeeeCCCCcCCCccccCCEEE
Q 015569          213 HIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFH  292 (404)
Q Consensus       213 nVWIDHcS~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTi~~N~f~~~~~~R~Pr~R~G~~H  292 (404)
                      |||||||+|+|+.||++|+++++++||||||+|++|+|++|+|+++....+..++||||||+|.++..+|+|++|+|++|
T Consensus       160 nvwIDH~s~s~~~D~~idi~~~s~~vTis~~~f~~~~~~~~~G~~~~~~~~~~~~vT~hhN~~~~n~~r~~p~~r~g~~h  239 (346)
T d1pxza_         160 NAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVH  239 (346)
T ss_dssp             EEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEE
T ss_pred             eEEEECcEeeccccCceeEecCCEEEEEEeeEEccCccccccCCCcccccCCCceEEEEccccCCCcccCCCccccceEE
Confidence            99999999999999999999999999999999999999999999988777788999999999988889999999999999


Q ss_pred             EEcCeeeCCcceeeccCCCceeeeeccEEeCCCCCcccceecccCC-CCCccCCCeeeecCceEEeceEEecCCCCCC-C
Q 015569          293 VVNNDYTHWEMYAIGGSANPTINSQGNRFAAPDRAFSKEVTKHEDA-PESEWRNWNWRSEGDLMVNGAFFTASGAGAS-S  370 (404)
Q Consensus       293 vvNN~y~~w~~yaigg~~~~~i~~egN~F~~~~~~~~k~vt~~~~~-~~~~~~~~~w~s~gd~~~nG~~f~~sg~~~~-~  370 (404)
                      ++||||++|..|++++++++++++|+|||++++.+..|+++++... ...++++|+|++++|+|+||++|.++|.... .
T Consensus       240 v~NN~~~n~~~~~~~~~~~~~v~~e~N~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~nga~~~~sg~~~~~~  319 (346)
T d1pxza_         240 VANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEETN  319 (346)
T ss_dssp             EESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSCEEEESCEEETTCBCCCBSCCCCCC
T ss_pred             EECcEeecCccEEEeccCceEEEEEeeEEECCCCccceeeecccccCCccccccceeeccCceeeccceeccCCCccccc
Confidence            9999999999999999999999999999999999998988887654 3346899999999999999999999987653 5


Q ss_pred             CCCCCCceeeCCCCcccchhcccCCCC
Q 015569          371 SYARASSLGARPSALVGPITGSAGALI  397 (404)
Q Consensus       371 ~~~~~~~~~~~~~~~v~~~t~~AG~l~  397 (404)
                      .|.++++|++.|++.|++|+++||||+
T Consensus       320 ~~~~~~~y~~~~as~V~~v~~~AGal~  346 (346)
T d1pxza_         320 IYNSNEAFKVENGNAAPQLTKNAGVVT  346 (346)
T ss_dssp             CCCTTTCCCCCCGGGHHHHTTTCSSCC
T ss_pred             cccCccccccCCHHHHHhhhccCCCCC
Confidence            688999999999999999999999995
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure