Citrus Sinensis ID: 015599

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400----
MMMMMITCMASSLSKKLTALLLILTVVFSSSVSARFVVEKSSIRVLHPQSLRSKHDSAIGNFGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKLDWTESMPHPDQRVEYELWTNSNDECGIRCDEQMNFVKNFKGHAQILERGGYTLFTPHYITWYCPRAFILSSQCKSQCINHGRYCAPDPEQDFGEGYQGKDVVFENLRQLCVHRVANESNRSWVWWDYVTDFHIRCSMKEKRYSKECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRGLLFNEQLVMF
ccHHHHHHHHccccHHHHHHHHHHHHHHHcccccEEEEEcccEEEEcccccccccccEEcccccccccccEEEEEEcccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHcccEEEEEEEccccccccccccccccccccccccEEEcEEEEcHHHHHHHHHHHHcccEEEEEEEccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHcccEEEccEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHcccccccccccccHHHHHHHHHHHcccccccEEEEEEEEEcccEEEccccccccccc
ccEEEEccccccccHHHHHHHHHHHHHHHHHccccEEEEEccEEEEccHHHcccccHHHcccccccccccEEEEEEEccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHcccEEEEEEEccccccccccccccccccccccccEEEcEEEEEccHHHHHHHHHHcccEEEEEEEcccccccccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHccccEEEccEEEEEEccccccccHHHHHHccccccEcccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHccccHHHHHHHHHHccccHHHHHHHccccccccccHHHHHHHHHHHcccccccEEEEEEEEEEccEEEccccccEEEEc
MMMMMITCMASSLSKKLTALLLILTVVFSSsvsarfvvekssirvlhpqslrskhdsaignfgipdyggfmvgsviypdkgasgcqpfegdkpfkskfprptvllldrgECYFALKVWHGQQAGAAAVLVAdsvdeplitmdspeestdangyvekigipsALIDRAFGLSLKEALKKGEEVVIKldwtesmphpdqrveyelwtnsndecgircdEQMNFVKNFKGHAQILerggytlftphyitwycprafilssqcksqcinhgrycapdpeqdfgegyqgkdvVFENLRQLCVHRVAnesnrswvwWDYVTDFHIRCSMKEKRYSKECAEEVMKSLDLPIEKIRKcigdpeadvENEVLKTEQEfqvgrgsrgdvtilptlvindvqyrgllfnEQLVMF
MMMMMITCMASSLSKKLTALLLILTVVFSSSVSARFVVEkssirvlhpqslrskhdsaIGNFGIPDYGGFMVGSVIYPDKGASGCQPfegdkpfkskfPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPLITMdspeestdangyVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKldwtesmphpdqRVEYELWTNSNDECGIRCDEQMNFVKNFKGHAQILERGGYTLFTPHYITWYCPRAFILSSQCKSQCINHGRYCAPDPEQDFGEGYQGKDVVFENLRQLCVHRvanesnrswvwwDYVTDFHIRCSMKEKRYSKECAEEVMksldlpieKIRKCIGDPEADVENEVLKTeqefqvgrgsrgdvtilptlvindvqyrgllfnEQLVMF
mmmmmITCMasslskkltallliltvvfsssvsarfvvEKSSIRVLHPQSLRSKHDSAIGNFGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHgqqagaaavlvaDSVDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKLDWTESMPHPDQRVEYELWTNSNDECGIRCDEQMNFVKNFKGHAQILERGGYTLFTPHYITWYCPRAFILSSQCKSQCINHGRYCAPDPEQDFGEGYQGKDVVFENLRQLCVHRVANESNRSWVWWDYVTDFHIRCSMKEKRYSKECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRGLLFNEQLVMF
****MITCMASSLSKKLTALLLILTVVFSSSVSARFVVEKSSIRVLHPQSLR*KHDSAIGNFGIPDYGGFMVGSVIYPDKGASGCQPFE****FKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPLI***********NGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKLDWTESMPHPDQRVEYELWTNSNDECGIRCDEQMNFVKNFKGHAQILERGGYTLFTPHYITWYCPRAFILSSQCKSQCINHGRYCAPDPEQDFGEGYQGKDVVFENLRQLCVHRVANESNRSWVWWDYVTDFHIRCSMKEKRYSKECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRGLLFNEQLV**
*******CMASSLSKKLTALLLILTVVFSSSVSARFVVEKSSIRVLHPQSLRSKHDSAIGNFGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKLDWTESMPHPDQRVEYELWTNSNDECGIRCDEQMNFVKNFKGHAQILERGGYTLFTPHYITWYCPRAFILSSQCKSQCINHGRYCAPDPEQDFGEGYQGKDVVFENLRQLCVHRVANESNRSWVWWDYVTDFHIRCSMKEKRYSKECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRGLLFNEQLVMF
MMMMMITCMASSLSKKLTALLLILTVVFSSSVSARFVVEKSSIRVLHPQSLRSKHDSAIGNFGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKLDWTESMPHPDQRVEYELWTNSNDECGIRCDEQMNFVKNFKGHAQILERGGYTLFTPHYITWYCPRAFILSSQCKSQCINHGRYCAPDPEQDFGEGYQGKDVVFENLRQLCVHRVANESNRSWVWWDYVTDFHIRCSMKEKRYSKECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRGLLFNEQLVMF
*MMMMITCMASSLSKKLTALLLILTVVFSSSVSARFVVEKSSIRVLHPQSLRSKHDSAIGNFGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKLDWTESMPHPDQRVEYELWTNSNDECGIRCDEQMNFVKNFKGHAQILERGGYTLFTPHYITWYCPRAFILSSQCKSQCINHGRYCAPDPEQDFGEGYQGKDVVFENLRQLCVHRVANESNRSWVWWDYVTDFHIRCSMKEKRYSKECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRGLLFNEQLVMF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMMMMITCMASSLSKKLTALLLILTVVFSSSVSARFVVEKSSIRVLHPQSLRSKHDSAIGNFGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKLDWTESMPHPDQRVEYELWTNSNDECGIRCDEQMNFVKNFKGHAQILERGGYTLFTPHYITWYCPRAFILSSQCKSQCINHGRYCAPDPEQDFGEGYQGKDVVFENLRQLCVHRVANESNRSWVWWDYVTDFHIRCSMKEKRYSKECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRGLLFNEQLVMF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query404 2.2.26 [Sep-21-2011]
Q9FYH7 631 Vacuolar-sorting receptor yes no 0.928 0.594 0.740 1e-178
Q8L7E3 625 Vacuolar-sorting receptor no no 0.933 0.603 0.744 1e-175
P93484 623 Vacuolar-sorting receptor N/A no 0.935 0.606 0.654 1e-153
O64758 618 Vacuolar-sorting receptor no no 0.950 0.621 0.628 1e-152
O80977 628 Vacuolar-sorting receptor no no 0.898 0.578 0.660 1e-147
Q56ZQ3 628 Vacuolar-sorting receptor no no 0.898 0.578 0.660 1e-147
P93026 623 Vacuolar-sorting receptor no no 0.923 0.598 0.642 1e-141
O22925 625 Vacuolar-sorting receptor no no 0.933 0.603 0.585 1e-137
Q90972381 E3 ubiquitin-protein liga yes no 0.396 0.419 0.273 7e-06
O54965381 E3 ubiquitin-protein liga yes no 0.396 0.419 0.257 7e-05
>sp|Q9FYH7|VSR6_ARATH Vacuolar-sorting receptor 6 OS=Arabidopsis thaliana GN=VSR6 PE=2 SV=3 Back     alignment and function desciption
 Score =  624 bits (1608), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 280/378 (74%), Positives = 338/378 (89%), Gaps = 3/378 (0%)

Query: 19  ALLLILTVVFSSSVSARFVVEKSSIRVLHPQSLRSKHDSAIGNFGIPDYGGFMVGSVIYP 78
           AL L LT+V +  V  RF+VEKSS+ +L+P ++RSKHD+AI NFG+P+YGG+M+GSV+Y 
Sbjct: 11  ALFLALTMVVNG-VFGRFIVEKSSVTILNPLAMRSKHDAAIANFGVPNYGGYMIGSVVYA 69

Query: 79  DKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPL 138
            +GA GC  F  DK FK KFPRPT+L++DRGECYFALKVW+GQQ+G AAVLVAD+VDEPL
Sbjct: 70  GQGAYGCDSF--DKTFKPKFPRPTILIIDRGECYFALKVWNGQQSGVAAVLVADNVDEPL 127

Query: 139 ITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKLDWTESMPHPDQR 198
           ITMDSPEES +A+ ++EK+ IPSALID +F  +LK+ALKKGEEVV+K+DW+ES+PHPD+R
Sbjct: 128 ITMDSPEESKEADDFIEKLNIPSALIDFSFANTLKQALKKGEEVVLKIDWSESLPHPDER 187

Query: 199 VEYELWTNSNDECGIRCDEQMNFVKNFKGHAQILERGGYTLFTPHYITWYCPRAFILSSQ 258
           VEYELWTN+NDECG RCDEQMNFVKNFKGHAQILE+GGY+LFTPHYITW+CP+ ++ S+Q
Sbjct: 188 VEYELWTNTNDECGARCDEQMNFVKNFKGHAQILEKGGYSLFTPHYITWFCPKDYVSSNQ 247

Query: 259 CKSQCINHGRYCAPDPEQDFGEGYQGKDVVFENLRQLCVHRVANESNRSWVWWDYVTDFH 318
           CKSQCIN GRYCAPDPEQDFG+GY GKD+VFENLRQLCVH+VA E+NRSWVWWDYVTDFH
Sbjct: 248 CKSQCINQGRYCAPDPEQDFGDGYDGKDIVFENLRQLCVHKVAKENNRSWVWWDYVTDFH 307

Query: 319 IRCSMKEKRYSKECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGD 378
           IRCSMKEK+YSKECAE V++SL LP++KI+KCIGDP+A+VENEVLK EQ  QVG+G RGD
Sbjct: 308 IRCSMKEKKYSKECAERVVESLGLPLDKIKKCIGDPDANVENEVLKAEQALQVGQGDRGD 367

Query: 379 VTILPTLVINDVQYRGLL 396
           VTILPTL++N+ QYRG L
Sbjct: 368 VTILPTLIVNNAQYRGKL 385
Vacuolar-sorting receptor (VSR) involved in clathrin-coated vesicles sorting from Golgi apparatus to vacuoles.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8L7E3|VSR7_ARATH Vacuolar-sorting receptor 7 OS=Arabidopsis thaliana GN=VSR7 PE=2 SV=2 Back     alignment and function description
>sp|P93484|VSR1_PEA Vacuolar-sorting receptor 1 OS=Pisum sativum GN=BP80 PE=1 SV=1 Back     alignment and function description
>sp|O64758|VSR5_ARATH Vacuolar-sorting receptor 5 OS=Arabidopsis thaliana GN=VSR5 PE=2 SV=1 Back     alignment and function description
>sp|O80977|VSR3_ARATH Vacuolar-sorting receptor 3 OS=Arabidopsis thaliana GN=VSR3 PE=2 SV=1 Back     alignment and function description
>sp|Q56ZQ3|VSR4_ARATH Vacuolar-sorting receptor 4 OS=Arabidopsis thaliana GN=VSR4 PE=2 SV=2 Back     alignment and function description
>sp|P93026|VSR1_ARATH Vacuolar-sorting receptor 1 OS=Arabidopsis thaliana GN=VSR1 PE=1 SV=2 Back     alignment and function description
>sp|O22925|VSR2_ARATH Vacuolar-sorting receptor 2 OS=Arabidopsis thaliana GN=VSR2 PE=2 SV=1 Back     alignment and function description
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1 SV=1 Back     alignment and function description
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query404
224075371 630 predicted protein [Populus trichocarpa] 0.957 0.614 0.827 0.0
297738038 1197 unnamed protein product [Vitis vinifera] 0.962 0.324 0.800 0.0
359472782 630 PREDICTED: vacuolar-sorting receptor 7-l 0.935 0.6 0.817 0.0
224053657 642 predicted protein [Populus trichocarpa] 0.925 0.582 0.826 0.0
356532605 624 PREDICTED: vacuolar-sorting receptor 7-l 0.943 0.610 0.786 0.0
356556144 628 PREDICTED: vacuolar-sorting receptor 7-l 0.898 0.578 0.807 0.0
297846064 631 hypothetical protein ARALYDRAFT_313733 [ 0.933 0.597 0.744 1e-178
15221538 631 vacuolar sorting receptor 6 [Arabidopsis 0.928 0.594 0.740 1e-176
9755389 649 F17F8.23 [Arabidopsis thaliana] 0.928 0.577 0.740 1e-176
449433467 630 PREDICTED: vacuolar-sorting receptor 6-l 0.903 0.579 0.764 1e-175
>gi|224075371|ref|XP_002304606.1| predicted protein [Populus trichocarpa] gi|222842038|gb|EEE79585.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/388 (82%), Positives = 349/388 (89%), Gaps = 1/388 (0%)

Query: 9   MASSLSKKLTALLLILTVVFSSSVSARFVVEKSSIRVLHPQSLRSKHDSAIGNFGIPDYG 68
           M +SL KKL +L L++T +  S V   FVVEKS+IRVL P SL SKHDSAIGNFGIPDYG
Sbjct: 1   MTASL-KKLVSLFLVITFIGKSCVFGHFVVEKSNIRVLSPLSLMSKHDSAIGNFGIPDYG 59

Query: 69  GFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAV 128
           G++VGSV+YPDKGA GCQ F+G KPFKSK  RPTVLLLDRGECYFALK W+ QQAGAAAV
Sbjct: 60  GYLVGSVVYPDKGAYGCQAFDGGKPFKSKGSRPTVLLLDRGECYFALKAWNAQQAGAAAV 119

Query: 129 LVADSVDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKLDW 188
           LVAD++DE LITMDSPE S DA+GYVEKIGIPSA I+++FG SLKEALK  E+VVIKLDW
Sbjct: 120 LVADNIDETLITMDSPEVSNDADGYVEKIGIPSAFIEKSFGESLKEALKNKEDVVIKLDW 179

Query: 189 TESMPHPDQRVEYELWTNSNDECGIRCDEQMNFVKNFKGHAQILERGGYTLFTPHYITWY 248
            ES+PHPDQRVEYELWTNSNDECG RC+EQM+FVKNFKGHAQILERGGYTLFTPHYITWY
Sbjct: 180 RESVPHPDQRVEYELWTNSNDECGARCEEQMDFVKNFKGHAQILERGGYTLFTPHYITWY 239

Query: 249 CPRAFILSSQCKSQCINHGRYCAPDPEQDFGEGYQGKDVVFENLRQLCVHRVANESNRSW 308
           CP+AFILSSQCKSQCINHGRYCAPDPEQDFG GYQGKDVVFENLRQLCVHRVANES RSW
Sbjct: 240 CPQAFILSSQCKSQCINHGRYCAPDPEQDFGVGYQGKDVVFENLRQLCVHRVANESGRSW 299

Query: 309 VWWDYVTDFHIRCSMKEKRYSKECAEEVMKSLDLPIEKIRKCIGDPEADVENEVLKTEQE 368
           VWWDYVTDFH RCSMK KRYSKECAE+V+KSLDLP+EKI KC+GDPEADVENEVL  EQE
Sbjct: 300 VWWDYVTDFHFRCSMKNKRYSKECAEDVLKSLDLPVEKIEKCMGDPEADVENEVLSIEQE 359

Query: 369 FQVGRGSRGDVTILPTLVINDVQYRGLL 396
            QVGRGSRGDV+ILPTLVIN+VQYRG L
Sbjct: 360 LQVGRGSRGDVSILPTLVINNVQYRGKL 387

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297738038|emb|CBI27239.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359472782|ref|XP_002275462.2| PREDICTED: vacuolar-sorting receptor 7-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224053657|ref|XP_002297915.1| predicted protein [Populus trichocarpa] gi|222845173|gb|EEE82720.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356532605|ref|XP_003534862.1| PREDICTED: vacuolar-sorting receptor 7-like [Glycine max] Back     alignment and taxonomy information
>gi|356556144|ref|XP_003546387.1| PREDICTED: vacuolar-sorting receptor 7-like [Glycine max] Back     alignment and taxonomy information
>gi|297846064|ref|XP_002890913.1| hypothetical protein ARALYDRAFT_313733 [Arabidopsis lyrata subsp. lyrata] gi|297336755|gb|EFH67172.1| hypothetical protein ARALYDRAFT_313733 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15221538|ref|NP_174375.1| vacuolar sorting receptor 6 [Arabidopsis thaliana] gi|374095475|sp|Q9FYH7.3|VSR6_ARATH RecName: Full=Vacuolar-sorting receptor 6; Short=AtVSR6; AltName: Full=BP80-like protein d; Short=AtBP80d; AltName: Full=Epidermal growth factor receptor-like protein 6; Short=AtELP6; Flags: Precursor gi|332193170|gb|AEE31291.1| vacuolar sorting receptor 6 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|9755389|gb|AAF98196.1|AC000107_19 F17F8.23 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449433467|ref|XP_004134519.1| PREDICTED: vacuolar-sorting receptor 6-like [Cucumis sativus] gi|449490688|ref|XP_004158678.1| PREDICTED: vacuolar-sorting receptor 6-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query404
TAIR|locus:2015726 631 VSR6 "VACUOLAR SORTING RECEPTO 0.881 0.564 0.726 1e-156
TAIR|locus:2046911 628 VSR3 "vaculolar sorting recept 0.883 0.568 0.631 1.9e-129
TAIR|locus:2044782 618 VSR5 "VACUOLAR SORTING RECEPTO 0.876 0.572 0.622 2.5e-129
TAIR|locus:2046931 628 VSR4 "vacuolar sorting recepto 0.883 0.568 0.631 3.2e-129
TAIR|locus:2085136 623 VSR1 "vacuolar sorting recepto 0.886 0.574 0.627 1.7e-128
TAIR|locus:2015726 VSR6 "VACUOLAR SORTING RECEPTOR 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1509 (536.3 bits), Expect = 1.0e-156, Sum P(2) = 1.0e-156
 Identities = 260/358 (72%), Positives = 314/358 (87%)

Query:    39 EKSSIRVLHPQSLRSKHDSAIGNFGIPDYGGFMVGSVIYPDKGASGCQPFEGDKPFKSKF 98
             EKSS+ +L+P ++RSKHD+AI NFG+P+YGG+M+GSV+Y  +GA GC  F  DK FK KF
Sbjct:    30 EKSSVTILNPLAMRSKHDAAIANFGVPNYGGYMIGSVVYAGQGAYGCDSF--DKTFKPKF 87

Query:    99 PRPTVLLLDRGECYFALKVWHXXXXXXXXXXXXDSVDEPLITMDSPEESTDANGYVEKIG 158
             PRPT+L++DRGECYFALKVW+            D+VDEPLITMDSPEES +A+ ++EK+ 
Sbjct:    88 PRPTILIIDRGECYFALKVWNGQQSGVAAVLVADNVDEPLITMDSPEESKEADDFIEKLN 147

Query:   159 IPSALIDRAFGLSLKEALKKGEEVVIKLDWTESMPHPDQRVEYELWTNSNDECGIRCDEQ 218
             IPSALID +F  +LK+ALKKGEEVV+K+DW+ES+PHPD+RVEYELWTN+NDECG RCDEQ
Sbjct:   148 IPSALIDFSFANTLKQALKKGEEVVLKIDWSESLPHPDERVEYELWTNTNDECGARCDEQ 207

Query:   219 MNFVKNFKGHAQILERGGYTLFTPHYITWYCPRAFILSSQCKSQCINHGRYCAPDPEQDF 278
             MNFVKNFKGHAQILE+GGY+LFTPHYITW+CP+ ++ S+QCKSQCIN GRYCAPDPEQDF
Sbjct:   208 MNFVKNFKGHAQILEKGGYSLFTPHYITWFCPKDYVSSNQCKSQCINQGRYCAPDPEQDF 267

Query:   279 GEGYQGKDVVFENLRQLCVHRVANESNRSWVWWDYVTDFHIRCSMKEKRYSKECAEEVMK 338
             G+GY GKD+VFENLRQLCVH+VA E+NRSWVWWDYVTDFHIRCSMKEK+YSKECAE V++
Sbjct:   268 GDGYDGKDIVFENLRQLCVHKVAKENNRSWVWWDYVTDFHIRCSMKEKKYSKECAERVVE 327

Query:   339 SLDLPIEKIRKCIGDPEADVENEVLKTEQEFQVGRGSRGDVTILPTLVINDVQYRGLL 396
             SL LP++KI+KCIGDP+A+VENEVLK EQ  QVG+G RGDVTILPTL++N+ QYRG L
Sbjct:   328 SLGLPLDKIKKCIGDPDANVENEVLKAEQALQVGQGDRGDVTILPTLIVNNAQYRGKL 385
GO:0005509 "calcium ion binding" evidence=IEA
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0005887 "integral to plasma membrane" evidence=ISS
GO:0006623 "protein targeting to vacuole" evidence=ISS;TAS
GO:0017119 "Golgi transport complex" evidence=IPI
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0009749 "response to glucose stimulus" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
TAIR|locus:2046911 VSR3 "vaculolar sorting receptor 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044782 VSR5 "VACUOLAR SORTING RECEPTOR 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046931 VSR4 "vacuolar sorting receptor 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085136 VSR1 "vacuolar sorting receptor homolog 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FYH7VSR6_ARATHNo assigned EC number0.74070.92820.5942yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_III0520
hypothetical protein (630 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query404
cd02125127 cd02125, PA_VSR, PA_VSR: Protease-associated (PA) 2e-63
cd00538126 cd00538, PA, PA: Protease-associated (PA) domain 1e-17
cd04818118 cd04818, PA_subtilisin_1, PA_subtilisin_1: Proteas 7e-16
cd02123153 cd02123, PA_C_RZF_like, PA_C-RZF_ like: Protease-a 1e-14
pfam0222596 pfam02225, PA, PA domain 6e-11
cd04816122 cd04816, PA_SaNapH_like, PA_SaNapH_like: Protease- 1e-08
cd02127118 cd02127, PA_hPAP21_like, PA_hPAP21_like: Protease- 3e-08
cd02132139 cd02132, PA_GO-like, PA_GO-like: Protease-associat 5e-08
cd02133143 cd02133, PA_C5a_like, PA_C5a_like: Protease-associ 1e-07
cd04813117 cd04813, PA_1, PA_1: Protease-associated (PA) doma 8e-07
cd02130122 cd02130, PA_ScAPY_like, PA_ScAPY_like: Protease-as 1e-06
cd02126126 cd02126, PA_EDEM3_like, PA_EDEM3_like: protease as 2e-06
cd02124129 cd02124, PA_PoS1_like, PA_PoS1_like: Protease-asso 5e-06
cd02129120 cd02129, PA_hSPPL_like, PA_hSPPL_like: Protease-as 1e-04
>gnl|CDD|239040 cd02125, PA_VSR, PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) Back     alignment and domain information 
 Score =  199 bits (507), Expect = 2e-63
 Identities = 78/128 (60%), Positives = 97/128 (75%), Gaps = 3/128 (2%)

Query: 61  NFGIPDYGGFMVGSVIYPDKGASGCQPFEG-DKPFKSK-FPRPTVLLLDRGECYFALKVW 118
           NFG+P YGG + G V+YP +  +GC+ F+   KP KS+   RP +LLLDRG C+F LK W
Sbjct: 1   NFGLPQYGGTLTGVVVYPKENRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAW 60

Query: 119 HGQQAGAAAVLVADSVDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKK 178
           + QQAGAAAVLVAD+VDEPL+TMD+PEES  +  Y+EKI IPSALI +AFG  LK+A+  
Sbjct: 61  NAQQAGAAAVLVADNVDEPLLTMDTPEES-GSADYIEKITIPSALITKAFGEKLKKAISN 119

Query: 179 GEEVVIKL 186
           GE VVIKL
Sbjct: 120 GEMVVIKL 127

This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 127
>gnl|CDD|238300 cd00538, PA, PA: Protease-associated (PA) domain Back     alignment and domain information
>gnl|CDD|240122 cd04818, PA_subtilisin_1, PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 Back     alignment and domain information
>gnl|CDD|239038 cd02123, PA_C_RZF_like, PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like Back     alignment and domain information
>gnl|CDD|216938 pfam02225, PA, PA domain Back     alignment and domain information
>gnl|CDD|240120 cd04816, PA_SaNapH_like, PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) Back     alignment and domain information
>gnl|CDD|239042 cd02127, PA_hPAP21_like, PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) Back     alignment and domain information
>gnl|CDD|239047 cd02132, PA_GO-like, PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 Back     alignment and domain information
>gnl|CDD|239048 cd02133, PA_C5a_like, PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase Back     alignment and domain information
>gnl|CDD|240117 cd04813, PA_1, PA_1: Protease-associated (PA) domain subgroup 1 Back     alignment and domain information
>gnl|CDD|239045 cd02130, PA_ScAPY_like, PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) Back     alignment and domain information
>gnl|CDD|239041 cd02126, PA_EDEM3_like, PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins Back     alignment and domain information
>gnl|CDD|239039 cd02124, PA_PoS1_like, PA_PoS1_like: Protease-associated (PA) domain PoS1-like Back     alignment and domain information
>gnl|CDD|239044 cd02129, PA_hSPPL_like, PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 404
cd02125127 PA_VSR PA_VSR: Protease-associated (PA) domain-con 99.95
cd02126126 PA_EDEM3_like PA_EDEM3_like: protease associated d 99.89
cd02123153 PA_C_RZF_like PA_C-RZF_ like: Protease-associated 99.89
cd02127118 PA_hPAP21_like PA_hPAP21_like: Protease-associated 99.88
cd02122138 PA_GRAIL_like PA _GRAIL_like: Protease-associated 99.88
cd02132139 PA_GO-like PA_GO-like: Protease-associated domain 99.88
cd04813117 PA_1 PA_1: Protease-associated (PA) domain subgrou 99.82
cd04816122 PA_SaNapH_like PA_SaNapH_like: Protease-associated 99.79
cd02129120 PA_hSPPL_like PA_hSPPL_like: Protease-associated d 99.78
cd02130122 PA_ScAPY_like PA_ScAPY_like: Protease-associated d 99.78
cd04818118 PA_subtilisin_1 PA_subtilisin_1: Protease-associat 99.77
KOG3920193 consensus Uncharacterized conserved protein, conta 99.74
cd02124129 PA_PoS1_like PA_PoS1_like: Protease-associated (PA 99.67
cd04817139 PA_VapT_like PA_VapT_like: Protease-associated dom 99.67
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 99.65
PF02225101 PA: PA domain; InterPro: IPR003137 The PA (Proteas 99.53
cd00538126 PA PA: Protease-associated (PA) domain. The PA dom 99.53
PF02128378 Peptidase_M36: Fungalysin metallopeptidase (M36); 99.51
cd02133143 PA_C5a_like PA_C5a_like: Protease-associated domai 99.46
cd04819127 PA_2 PA_2: Protease-associated (PA) domain subgrou 99.44
KOG2442 541 consensus Uncharacterized conserved protein, conta 99.43
cd04815134 PA_M28_2 PA_M28_2: Protease-associated (PA) domain 99.34
cd02120126 PA_subtilisin_like PA_subtilisin_like: Protease-as 99.11
cd02128183 PA_TfR PA_TfR: Protease-associated domain containi 99.05
cd02121220 PA_GCPII_like PA_GCPII_like: Protease-associated d 98.43
cd04822151 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do 98.37
cd04814142 PA_M28_1 PA_M28_1: Protease-associated (PA) domain 98.34
cd02131153 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso 98.33
cd04820137 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do 98.2
cd04821157 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do 95.56
cd03023154 DsbA_Com1_like DsbA family, Com1-like subfamily; c 95.29
PF13462162 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV 86.0
cd03022192 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-car 83.87
cd03024201 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a D 81.9
cd03019178 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m 80.88
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) Back     alignment and domain information 
Probab=99.95  E-value=4.5e-27  Score=203.91  Aligned_cols=125  Identities=61%  Similarity=1.032  Sum_probs=103.2

Q ss_pred             ccCCCCCCCceEEEEEecCCCCCCCCCCCCCC-CCC-CCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEECCCCCc
Q 015599           61 NFGIPDYGGFMVGSVIYPDKGASGCQPFEGDK-PFK-SKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPL  138 (404)
Q Consensus        61 ~FG~~~~~~~l~G~lv~~~~~~~gC~~~~~~~-~~~-~~~~~g~IvLV~RG~CsF~~Kv~nAQ~aGA~avII~nn~~~~l  138 (404)
                      +||.|+||++++|.|++++++.+||++++... +.+ .....++|+||+||+|+|.+|++|||++||++|||||+.++++
T Consensus         1 ~FG~~~yg~~~~G~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~   80 (127)
T cd02125           1 NFGLPQYGGTLTGVVVYPKENRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPL   80 (127)
T ss_pred             CCCCCCcCCeeEEEEEecCCccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCcc
Confidence            69999999999999999988999999987421 110 0134689999999999999999999999999999999988777


Q ss_pred             cccCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHhcCCEEEEEE
Q 015599          139 ITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVIKL  186 (404)
Q Consensus       139 ~~m~~~~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V~v~l  186 (404)
                      +.|..++++. ..++..+++||+++|++++|+.|++++++|..|++++
T Consensus        81 ~~m~~~~~~~-~~~~~~~i~IP~v~Is~~~G~~L~~~l~~g~~V~v~~  127 (127)
T cd02125          81 LTMDTPEESG-SADYIEKITIPSALITKAFGEKLKKAISNGEMVVIKL  127 (127)
T ss_pred             ccccCccccc-ccccCCCceEeEEEECHHHHHHHHHHHhcCCeEEEeC
Confidence            7886543311 0133457899999999999999999999999998874

This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins Back     alignment and domain information
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like Back     alignment and domain information
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) Back     alignment and domain information
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like Back     alignment and domain information
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 Back     alignment and domain information
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 Back     alignment and domain information
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) Back     alignment and domain information
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like Back     alignment and domain information
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) Back     alignment and domain information
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 Back     alignment and domain information
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] Back     alignment and domain information
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like Back     alignment and domain information
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] Back     alignment and domain information
>cd00538 PA PA: Protease-associated (PA) domain Back     alignment and domain information
>PF02128 Peptidase_M36: Fungalysin metallopeptidase (M36); InterPro: IPR001842 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase Back     alignment and domain information
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 Back     alignment and domain information
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] Back     alignment and domain information
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 Back     alignment and domain information
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases Back     alignment and domain information
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) Back     alignment and domain information
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like Back     alignment and domain information
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 Back     alignment and domain information
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 Back     alignment and domain information
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) Back     alignment and domain information
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 Back     alignment and domain information
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2 Back     alignment and domain information
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti Back     alignment and domain information
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A Back     alignment and domain information
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway Back     alignment and domain information
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif Back     alignment and domain information
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query404
3icu_A194 E3 ubiquitin-protein ligase RNF128; E3 ligase, ene 2e-18
1xf1_A 926 C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St 7e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
2ek8_A421 Aminopeptidase; metalloproteinase, hydrolase; 1.80 5e-05
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} Length = 194 Back     alignment and structure
 Score = 81.8 bits (201), Expect = 2e-18
 Identities = 25/146 (17%), Positives = 53/146 (36%), Gaps = 16/146 (10%)

Query: 56  DSAIGNFGIPDYGGFMVGSVIYPD--KGASGCQP---FEGDKPFKSKFPRPTVLLLDRGE 110
            S  G +G       + G ++ PD     + C P   F     + S      + L+ RG 
Sbjct: 55  LSEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGG 114

Query: 111 -CYFALKVWHGQQAGAAAVLVADSVDEPLITMDSPEESTDANGYVEKIGIPSALIDRAFG 169
            C FA K+    + GA+  ++ +        +           +   + I + +I    G
Sbjct: 115 GCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMS--------HPGAVDIVAIMIGNLKG 166

Query: 170 LSLKEALKKGEEVVIKLDWTESMPHP 195
             + +++++G +V + +       H 
Sbjct: 167 TKILQSIQRGIQVTMVI--EVGKKHG 190
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Length = 421 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query404
3icu_A194 E3 ubiquitin-protein ligase RNF128; E3 ligase, ene 99.9
3iib_A444 Peptidase M28; YP_926796.1, structural genomics, J 99.24
2ek8_A421 Aminopeptidase; metalloproteinase, hydrolase; 1.80 99.02
3fed_A 707 Glutamate carboxypeptidase III; metallopeptidase, 98.74
3kas_A 640 Transferrin receptor protein 1; transferrin recept 98.73
3i6s_A649 Subtilisin-like protease; PA-domain, FN3-domain, h 98.04
1xf1_A 926 C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St 97.91
1y9z_A441 Alkaline serine protease; subtilisin-like alpha/be 97.75
3gha_A202 Disulfide bond formation protein D; BDBD, DSBA-lik 94.85
3bci_A186 Disulfide bond protein A; thiol-disulfide oxidored 93.24
3gyk_A175 27KDA outer membrane protein; APC61738.2, siliciba 92.75
3gmf_A205 Protein-disulfide isomerase; oxidoreductase, PSI-2 90.5
3vta_A621 Cucumisin; subtilisin-like fold, serine protease, 88.26
3hz8_A193 Thiol:disulfide interchange protein DSBA; thiol-ox 85.79
2imf_A203 HCCA isomerase, 2-hydroxychromene-2-carboxylate is 85.44
3h93_A192 Thiol:disulfide interchange protein DSBA; disulfid 85.08
3fz5_A202 Possible 2-hydroxychromene-2-carboxylate isomeras; 84.14
3hd5_A195 Thiol:disulfide interchange protein DSBA; protein 83.86
4dvc_A184 Thiol:disulfide interchange protein DSBA; pilus as 83.24
3f4s_A226 Alpha-DSBA1, putative uncharacterized protein; thi 83.04
2rem_A193 Disulfide oxidoreductase; disulfide oxidoreductase 82.45
3l9v_A189 Putative thiol-disulfide isomerase or thioredoxin; 81.55
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} Back     alignment and structure
Probab=99.90  E-value=1.1e-22  Score=186.73  Aligned_cols=142  Identities=21%  Similarity=0.334  Sum_probs=111.0

Q ss_pred             eecCeEEEE--cCCC---cceeeeccccccCCCCCCCceEEEEEecC--CCCCCCCCCCCCC-CC--CCCCCCCeEEEEe
Q 015599           38 VEKSSIRVL--HPQS---LRSKHDSAIGNFGIPDYGGFMVGSVIYPD--KGASGCQPFEGDK-PF--KSKFPRPTVLLLD  107 (404)
Q Consensus        38 ve~~~l~V~--~P~~---l~~~~~~~~A~FG~~~~~~~l~G~lv~~~--~~~~gC~~~~~~~-~~--~~~~~~g~IvLV~  107 (404)
                      ..+..+.|.  .|..   ...++....|+||.+.+.++++|.|+++.  ++.+||++.++.. +.  .++..+++||||+
T Consensus        32 ~~~A~vn~sy~d~~~~~n~t~~~~~e~a~FG~~~p~~~v~G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~  111 (194)
T 3icu_A           32 VWTAYLNVSWRVPHTGVNRTVWELSEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQ  111 (194)
T ss_dssp             EEEEEEEEEEECCSSCTTCEEEEEEEEEEECTTSCCSCEEEEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCEEEEEE
T ss_pred             EEEEEEEEEEECCCCCccceeeecccccccCCCCCCCCcEEEEEecCCCCCcCCCCCCccccCCcccccccCCCeEEEEE
Confidence            344555544  3443   22357788999999999999999999975  4789999987421 11  1122368999999


Q ss_pred             cCC-CCHHHHHHHHHHcCCcEEEEEECCC--CCccccCCCCCCcccCCCccccCceEEEEeHHHHHHHHHHHhcCCEEEE
Q 015599          108 RGE-CYFALKVWHGQQAGAAAVLVADSVD--EPLITMDSPEESTDANGYVEKIGIPSALIDRAFGLSLKEALKKGEEVVI  184 (404)
Q Consensus       108 RG~-CsF~~Kv~nAQ~aGA~avII~nn~~--~~l~~m~~~~d~~~~~~~~~~i~IPsv~Is~~dG~~L~~~l~~g~~V~v  184 (404)
                      ||+ |+|.+|++|||++||+||||||+..  +.+.+|+.++          ..+||+++|++++|+.|+++|++|.+|++
T Consensus       112 RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~----------~~~IPsv~Is~~~G~~L~~~L~~G~~Vtv  181 (194)
T 3icu_A          112 RGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPG----------AVDIVAIMIGNLKGTKILQSIQRGIQVTM  181 (194)
T ss_dssp             SCTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTT----------CCSSEEEEECHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCC----------CCceeEEEECHHHHHHHHHHHHCCCeEEE
Confidence            999 9999999999999999999999852  3456776321          35799999999999999999999999999


Q ss_pred             EEEec
Q 015599          185 KLDWT  189 (404)
Q Consensus       185 ~l~~~  189 (404)
                      ++...
T Consensus       182 ti~vg  186 (194)
T 3icu_A          182 VIEVG  186 (194)
T ss_dssp             EEEEE
T ss_pred             EEECC
Confidence            88873
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} Back     alignment and structure
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Back     alignment and structure
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... Back     alignment and structure
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A Back     alignment and structure
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Back     alignment and structure
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Back     alignment and structure
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Back     alignment and structure
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A Back     alignment and structure
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A Back     alignment and structure
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} Back     alignment and structure
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans} Back     alignment and structure
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Back     alignment and structure
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A Back     alignment and structure
>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A* Back     alignment and structure
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0 Back     alignment and structure
>3fz5_A Possible 2-hydroxychromene-2-carboxylate isomeras; 2-hydroxychromene-2-carboxylate ISO structural genomics, PSI-2; HET: MSE GSH PGE; 2.40A {Rhodobacter sphaeroides 2} Back     alignment and structure
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis} Back     alignment and structure
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A Back     alignment and structure
>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A* Back     alignment and structure
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa} Back     alignment and structure
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query404
d1de4c2193 Transferrin receptor ectodomain, apical domain {Hu 98.91
d3bi1a2233 Glutamate carboxypeptidase II {Human (Homo sapiens 98.46
d1fvka_188 Disulfide-bond formation facilitator (DsbA) {Esche 85.65
d1beda_181 Disulfide-bond formation facilitator (DsbA) {Vibri 83.26
d1un2a_ 195 Disulfide-bond formation facilitator (DsbA) {Esche 81.89
>d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: PA domain
family: PA domain
domain: Transferrin receptor ectodomain, apical domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.5e-09  Score=96.96  Aligned_cols=103  Identities=16%  Similarity=0.142  Sum_probs=69.0

Q ss_pred             CCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEECCCCCc---------
Q 015599           68 GGFMVGSVIYPDKGASGCQPFEGDKPFKSKFPRPTVLLLDRGECYFALKVWHGQQAGAAAVLVADSVDEPL---------  138 (404)
Q Consensus        68 ~~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAQ~aGA~avII~nn~~~~l---------  138 (404)
                      .+.++|+|||+-   . |...++. .+ .....|+|+|++||.|+|.+|++|||++||+|||||.+..+..         
T Consensus        36 ~G~v~g~lVy~n---~-G~~~Df~-~L-~~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~  109 (193)
T d1de4c2          36 AATVTGKLVHAN---F-GTKKDFE-DL-YTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFF  109 (193)
T ss_dssp             CEEEEECEEECS---T-TCHHHHH-TC-SSCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCC
T ss_pred             CCceeEEEEEcc---C-CCHHHHH-Hh-ccccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCcccccc
Confidence            478999999952   2 2222210 11 1234699999999999999999999999999999998643210         


Q ss_pred             --cccCCCCCC-cc-----------cCCCccccCceEEEEeHHHHHHHHHHHh
Q 015599          139 --ITMDSPEES-TD-----------ANGYVEKIGIPSALIDRAFGLSLKEALK  177 (404)
Q Consensus       139 --~~m~~~~d~-~~-----------~~~~~~~i~IPsv~Is~~dG~~L~~~l~  177 (404)
                        ..++ ++|- ++           ......-.+||+.=|+.+|++.|++.|.
T Consensus       110 g~~~~~-~GDPlTPg~ps~~~~~~~~~~~~~lP~IP~~PIS~~dA~~lL~~L~  161 (193)
T d1de4c2         110 GHAHLG-TGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME  161 (193)
T ss_dssp             EECCSS-SSCTTSTTSCCCGGGTCCSCCCTTSCSSCEEECCHHHHHHHHTTBC
T ss_pred             cccccC-CCCCCCCCcccccccccCccccCCCCcCCeeeCCHHHHHHHHHHcC
Confidence              1111 1110 00           0011124579999999999999999984
>d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure