Citrus Sinensis ID: 015624

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400---
MAYYSFWLARLRSSSKSILSSLRTSKFSTQNTRTRTLITLSSDNSSRNGTPFQLFSASLLPLALAASAGSLAMQSQTHPSLCDSSALDSRDVNIGGKGSTEYVVKGSHKEIPQELVDELKAICQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGKNLPELPTLMFEFIGTREMISLFAFNTFL
cccccHHHHHHcccHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHEEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccHHHHHHHcccccccccccccccEEEEcccHHHHHHHHHHHHcccccEEEcccccccccccccccccEEEEccccccEEEEccccccEEEcccccHHHHHHHHcccccEEcccccccccHHHHHHccccccccccccccccEEEEEEEEcccccEEEccccccccccccccccccccccccHHHHHEEEEEccccccccEEEEEEcccHHHHHHHHHHHHHccccccEEccccHHHHHHHHHHcccccccccEEEEEEcccHHHHHHHHHHccc
cccHHHHHHHHHHHccHHHHcccccHHcccccccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccEccccccEccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHccccccccccccccccEEEEcccHHHHHHHHHHHHHccccEEEccccccccccEccccccEEEEHHHHcEEEEEcHHccEEEEcccHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEcccHHHEEEEEEEEccccEEEEcccEEEccccccccEEEEcccccHEEEEEEEEEEccccHHHHEEEEccccHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHccccccccEEEEEEcccHHHHHHHHHHHHc
MAYYSFWLARLRSSSKSILSSLrtskfstqntrtRTLITlssdnssrngtpfqlfSASLLPLALAASagslamqsqthpslcdssaldsrdvniggkgsteyvvkgshkeiPQELVDELKAICQddmtmdyeeryihgkpqnsfhkavnipdiivfprsedevsKIVKccdkhkvpiipyggatsieghtlspnggvcidLSLMKSVKALHIEDMDVVVEPGIGWMELNEylepyglffpldpgpgatiggmcatrcsgSLAVRYGTMRDNVINLKVVLANGDVVKTASRARksaagydltrliigsegtlgIITEVTLRLqkipqhsvvatcnfptikdAADVAIATMLSGIQVSRVELLDEVQVRAVNiangknlpelptlmFEFIGTREMISLFAFNTFL
MAYYSFWLARLRSSSKSILSslrtskfstqntrtrtlitlssdnssrnGTPFQLFSASLLPLALAASAGSLAMQSQTHPSLCDSSALDSRDVNIGGKGSTEYVVKGSHKEIPQELVDELKAICQDDMTMDYEERYIHgkpqnsfhkavNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVlangdvvktasrarksaagydltrliigsegtLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVniangknlpelpTLMFEFIGTREMISLFAFNTFL
MAYYSFWLArlrsssksilsslrtsKFSTQNTRTRTLITLSSDNSSRNGTPFQlfsasllplalaasagslaMQSQTHPSLCDSSALDSRDVNIGGKGSTEYVVKGSHKEIPQELVDELKAICQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGKNLPELPTLMFEFIGTREMISLFAFNTFL
**YYSFWLARL*****************************************QLFSASLLPLALA************************************YVVKG***EIPQELVDELKAICQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGKNLPELPTLMFEFIGTREMISLFAFNT**
********************************************************ASLLPLALAASAGSLAMQSQT************************************ELVDELKAICQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGKNLPELPTLMFEFIGTREMISLFAFNTFL
MAYYSFWLARLRSSSKSILSSLRTSKFSTQNTRTRTLITLSSDNSSRNGTPFQLFSASLLPLALAASA***************SSALDSRDVNIGGKGSTEYVVKGSHKEIPQELVDELKAICQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGKNLPELPTLMFEFIGTREMISLFAFNTFL
*AYYSFWLARLRSSSKSILSSLRTSKFSTQNTRTRTLITLSSDNSSRNGTPFQLFSASLLPLALAASAGSLAMQSQTHPSLCDSSALDSRDVNIGGKGSTEYVVKGSHKEIPQELVDELKAICQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGKNLPELPTLMFEFIGTREMISLFAFNTFL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAYYSFWLARLRSSSKSILSSLRTSKFSTQNTRTRTLITLSSDNSSRNGTPFQLFSASLLPLALAASAGSLAMQSQTHPSLCDSSALDSRDVNIGGKGSTEYVVKGSHKEIPQELVDELKAICQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGKNLPELPTLMFEFIGTREMISLFAFNTFL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query403 2.2.26 [Sep-21-2011]
Q94AX4 567 D-lactate dehydrogenase [ yes no 0.935 0.664 0.736 1e-163
Q7TNG8 484 Probable D-lactate dehydr yes no 0.724 0.603 0.442 1e-62
Q12627 576 D-lactate dehydrogenase [ yes no 0.784 0.548 0.4 6e-62
Q86WU2 507 Probable D-lactate dehydr yes no 0.722 0.573 0.396 1e-59
P32891 587 D-lactate dehydrogenase [ yes no 0.595 0.408 0.461 8e-57
P94535 470 Glycolate oxidase subunit yes no 0.533 0.457 0.368 7e-37
Q9V778 631 Alkyldihydroxyacetonephos yes no 0.620 0.396 0.325 5e-29
Q50685 459 Uncharacterized FAD-linke yes no 0.615 0.540 0.286 4e-26
Q1JPD3 544 D-2-hydroxyglutarate dehy no no 0.558 0.413 0.321 2e-23
O23240 559 D-2-hydroxyglutarate dehy no no 0.511 0.368 0.311 3e-23
>sp|Q94AX4|DLD_ARATH D-lactate dehydrogenase [cytochrome], mitochondrial OS=Arabidopsis thaliana GN=DLD PE=1 SV=1 Back     alignment and function desciption
 Score =  575 bits (1483), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 279/379 (73%), Positives = 324/379 (85%), Gaps = 2/379 (0%)

Query: 13  SSSKSILSSLRTSKFSTQNTRTRTLITLSSDNSSRNGTPFQLFSASLLPLALAASAGSLA 72
           + SK+ILS LR  +      ++   +T+ S    R   P   +S+SL PLA+AASA S A
Sbjct: 8   ARSKTILSFLRPCRQLHSTPKSTGDVTVLSPVKGRRRLP-TCWSSSLFPLAIAASATSFA 66

Query: 73  -MQSQTHPSLCDSSALDSRDVNIGGKGSTEYVVKGSHKEIPQELVDELKAICQDDMTMDY 131
            +          SSALDSRD+ +GGK STE VVKG +K++P+EL+ +LK I +D++T DY
Sbjct: 67  YLNLSNPSISESSSALDSRDITVGGKDSTEAVVKGEYKQVPKELISQLKTILEDNLTTDY 126

Query: 132 EERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTL 191
           +ERY HGKPQNSFHKAVNIPD++VFPRSE+EVSKI+K C+++KVPI+PYGGATSIEGHTL
Sbjct: 127 DERYFHGKPQNSFHKAVNIPDVVVFPRSEEEVSKILKSCNEYKVPIVPYGGATSIEGHTL 186

Query: 192 SPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGG 251
           +P GGVCID+SLMK VKALH+EDMDV+VEPGIGW+ELNEYLE YGLFFPLDPGPGA+IGG
Sbjct: 187 APKGGVCIDMSLMKRVKALHVEDMDVIVEPGIGWLELNEYLEEYGLFFPLDPGPGASIGG 246

Query: 252 MCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTL 311
           MCATRCSGSLAVRYGTMRDNVI+LKVVL NGDVVKTASRARKSAAGYDLTRLIIGSEGTL
Sbjct: 247 MCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLIIGSEGTL 306

Query: 312 GIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNI 371
           G+ITE+TLRLQKIPQHSVVA CNFPT+KDAADVAIATM+SGIQVSRVELLDEVQ+RA+N+
Sbjct: 307 GVITEITLRLQKIPQHSVVAVCNFPTVKDAADVAIATMMSGIQVSRVELLDEVQIRAINM 366

Query: 372 ANGKNLPELPTLMFEFIGT 390
           ANGKNL E PTLMFEFIGT
Sbjct: 367 ANGKNLTEAPTLMFEFIGT 385
Catalyzes the stereospecific oxidation of D-lactate to pyruvate. Involved in the detoxification of methylglyoxal and D-lactate, but probably not involved in the metabolization of glycolate.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 2EC: .EC: 4
>sp|Q7TNG8|LDHD_MOUSE Probable D-lactate dehydrogenase, mitochondrial OS=Mus musculus GN=Ldhd PE=1 SV=1 Back     alignment and function description
>sp|Q12627|DLD1_KLULA D-lactate dehydrogenase [cytochrome], mitochondrial OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=DLD1 PE=3 SV=2 Back     alignment and function description
>sp|Q86WU2|LDHD_HUMAN Probable D-lactate dehydrogenase, mitochondrial OS=Homo sapiens GN=LDHD PE=1 SV=1 Back     alignment and function description
>sp|P32891|DLD1_YEAST D-lactate dehydrogenase [cytochrome] 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DLD1 PE=1 SV=2 Back     alignment and function description
>sp|P94535|GLCD_BACSU Glycolate oxidase subunit GlcD OS=Bacillus subtilis (strain 168) GN=glcD PE=3 SV=1 Back     alignment and function description
>sp|Q9V778|ADAS_DROME Alkyldihydroxyacetonephosphate synthase OS=Drosophila melanogaster GN=CG10253 PE=2 SV=1 Back     alignment and function description
>sp|Q50685|Y2280_MYCTU Uncharacterized FAD-linked oxidoreductase Rv2280 OS=Mycobacterium tuberculosis GN=Rv2280 PE=1 SV=1 Back     alignment and function description
>sp|Q1JPD3|D2HDH_BOVIN D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Bos taurus GN=D2HGDH PE=2 SV=2 Back     alignment and function description
>sp|O23240|D2HDH_ARATH D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=D2HGDH PE=1 SV=3 Back     alignment and function description

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query403
TAIR|locus:2144093 567 AT5G06580 [Arabidopsis thalian 0.779 0.553 0.819 1.4e-142
DICTYBASE|DDB_G0270806 554 ldhd "D-lactate dehydrogenase 0.707 0.514 0.477 4.4e-68
TIGR_CMR|SPO_0634 465 SPO_0634 "oxidoreductase, FAD- 0.595 0.516 0.537 1.2e-67
ASPGD|ASPL0000030870 560 AN8317 [Emericella nidulans (t 0.734 0.528 0.453 9.4e-66
ASPGD|ASPL0000035818 601 AN9066 [Emericella nidulans (t 0.679 0.455 0.471 1.1e-64
UNIPROTKB|G4MWZ3 601 MGG_01202 "D-lactate dehydroge 0.625 0.419 0.515 1.1e-64
ZFIN|ZDB-GENE-030131-6140 497 ldhd "lactate dehydrogenase D" 0.684 0.555 0.453 8.8e-63
UNIPROTKB|F1LVD7 483 Ldhd "Protein Ldhd" [Rattus no 0.724 0.604 0.449 7.9e-62
MGI|MGI:106428 484 Ldhd "lactate dehydrogenase D" 0.717 0.597 0.447 2.7e-61
RGD|1308107 501 Ldhd "lactate dehydrogenase D" 0.702 0.564 0.453 1.5e-60
TAIR|locus:2144093 AT5G06580 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1394 (495.8 bits), Expect = 1.4e-142, P = 1.4e-142
 Identities = 258/315 (81%), Positives = 296/315 (93%)

Query:    77 THPSLCDSS-ALDSRDVNIGGKGSTEYVVKGSHKEIPQELVDELKAICQDDMTMDYEERY 135
             ++PS+ +SS ALDSRD+ +GGK STE VVKG +K++P+EL+ +LK I +D++T DY+ERY
Sbjct:    71 SNPSISESSSALDSRDITVGGKDSTEAVVKGEYKQVPKELISQLKTILEDNLTTDYDERY 130

Query:   136 IHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNG 195
              HGKPQNSFHKAVNIPD++VFPRSE+EVSKI+K C+++KVPI+PYGGATSIEGHTL+P G
Sbjct:   131 FHGKPQNSFHKAVNIPDVVVFPRSEEEVSKILKSCNEYKVPIVPYGGATSIEGHTLAPKG 190

Query:   196 GVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCAT 255
             GVCID+SLMK VKALH+EDMDV+VEPGIGW+ELNEYLE YGLFFPLDPGPGA+IGGMCAT
Sbjct:   191 GVCIDMSLMKRVKALHVEDMDVIVEPGIGWLELNEYLEEYGLFFPLDPGPGASIGGMCAT 250

Query:   256 RCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIIT 315
             RCSGSLAVRYGTMRDNVI+LKVVL NGDVVKTASRARKSAAGYDLTRLIIGSEGTLG+IT
Sbjct:   251 RCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLIIGSEGTLGVIT 310

Query:   316 EVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGK 375
             E+TLRLQKIPQHSVVA CNFPT+KDAADVAIATM+SGIQVSRVELLDEVQ+RA+N+ANGK
Sbjct:   311 EITLRLQKIPQHSVVAVCNFPTVKDAADVAIATMMSGIQVSRVELLDEVQIRAINMANGK 370

Query:   376 NLPELPTLMFEFIGT 390
             NL E PTLMFEFIGT
Sbjct:   371 NLTEAPTLMFEFIGT 385
GO:0003824 "catalytic activity" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA;IDA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0008891 "glycolate oxidase activity" evidence=IGI
GO:0019154 "glycolate dehydrogenase activity" evidence=IDA
GO:0005524 "ATP binding" evidence=IDA
GO:0004458 "D-lactate dehydrogenase (cytochrome) activity" evidence=IDA
GO:0042802 "identical protein binding" evidence=IPI
GO:0051596 "methylglyoxal catabolic process" evidence=IMP
DICTYBASE|DDB_G0270806 ldhd "D-lactate dehydrogenase (cytochrome)" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0634 SPO_0634 "oxidoreductase, FAD-binding" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
ASPGD|ASPL0000030870 AN8317 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ASPGD|ASPL0000035818 AN9066 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4MWZ3 MGG_01202 "D-lactate dehydrogenase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-6140 ldhd "lactate dehydrogenase D" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1LVD7 Ldhd "Protein Ldhd" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:106428 Ldhd "lactate dehydrogenase D" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1308107 Ldhd "lactate dehydrogenase D" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94AX4DLD_ARATH1, ., 1, ., 2, ., 40.73610.93540.6649yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.1.20.963
4th Layer1.1.2.40.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027124001
SubName- Full=Chromosome chr8 scaffold_41, whole genome shotgun sequence; (568 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00019865001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (961 aa)
     •• 0.917
GSVIVG00029246001
SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (258 aa)
     •  0.916
GSVIVG00009618001
RecName- Full=L-lactate dehydrogenase; EC=1.1.1.27; (350 aa)
     •• 0.915
GSVIVG00026376001
hypothetical protein LOC100248878 (320 aa)
     •• 0.913
GSVIVG00006511001
RecName- Full=Pyruvate kinase; EC=2.7.1.40; (622 aa)
     •  0.903
GSVIVG00025495001
RecName- Full=Pyruvate kinase; EC=2.7.1.40; (475 aa)
     •  0.903
26N20_30
RecName- Full=Pyruvate kinase; EC=2.7.1.40; (493 aa)
     •  0.902
GSVIVG00024850001
RecName- Full=Pyruvate kinase; EC=2.7.1.40; (491 aa)
     •  0.902
GSVIVG00002610001
RecName- Full=Pyruvate kinase; EC=2.7.1.40; (510 aa)
     •  0.901
GSVIVG00025274001
SubName- Full=Putative uncharacterized protein (Chromosome chr9 scaffold_33, whole genome shotg [...] (398 aa)
     •• 0.900

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query403
PLN02805 555 PLN02805, PLN02805, D-lactate dehydrogenase [cytoc 0.0
COG0277 459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 9e-78
TIGR00387 413 TIGR00387, glcD, glycolate oxidase, subunit GlcD 2e-57
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 2e-43
PRK11230 499 PRK11230, PRK11230, glycolate oxidase subunit GlcD 9e-24
PRK11282 352 PRK11282, glcE, glycolate oxidase FAD binding subu 1e-12
TIGR01678 438 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxida 8e-12
pfam02913 247 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-t 1e-10
PLN02465 573 PLN02465, PLN02465, L-galactono-1,4-lactone dehydr 3e-10
TIGR01677 557 TIGR01677, pln_FAD_oxido, plant-specific FAD-depen 2e-08
TIGR01679 419 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase 6e-06
TIGR01676 541 TIGR01676, GLDHase, galactonolactone dehydrogenase 5e-04
>gnl|CDD|178402 PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome] Back     alignment and domain information 
 Score =  674 bits (1739), Expect = 0.0
 Identities = 300/381 (78%), Positives = 336/381 (88%), Gaps = 8/381 (2%)

Query: 10  RLRSSSKSILSSLRTSKFSTQNTRTRTLITLSSDNSSRNGTPFQLFSASLLPLALAASAG 69
           RLRS  ++   +     F           T+++    R   P   +S+SLLPLA+AASAG
Sbjct: 1   RLRSLLRTSRPNRALPSFPKSTLDV----TVTTPVKGRRRLPTS-WSSSLLPLAIAASAG 55

Query: 70  SLAMQSQTHPSLCDSSALDSRDVNIGGKGSTEYVVKGSHKEIPQELVDELKAICQDDMTM 129
           SLA  +Q++PSLCDSS LDSR   +GGKGSTE+VVKG HK +PQEL+DELKAI QD+MT+
Sbjct: 56  SLAYLNQSNPSLCDSSDLDSR---VGGKGSTEFVVKGEHKLVPQELIDELKAILQDNMTL 112

Query: 130 DYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGH 189
           DY+ERY HGKPQNSFHKAVNIPD++VFPRSE+EVSKIVK C+K+KVPI+PYGGATSIEGH
Sbjct: 113 DYDERYFHGKPQNSFHKAVNIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGH 172

Query: 190 TLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATI 249
           TL+P+GGVCID+SLMKSVKALH+EDMDVVVEPGIGW+ELNEYLEPYGLFFPLDPGPGATI
Sbjct: 173 TLAPHGGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLELNEYLEPYGLFFPLDPGPGATI 232

Query: 250 GGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEG 309
           GGMCATRCSGSLAVRYGTMRDNVI+LKVVL NGDVVKTASRARKSAAGYDLTRL+IGSEG
Sbjct: 233 GGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGSEG 292

Query: 310 TLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAV 369
           TLG+ITEVTLRLQKIPQHSVVA CNFPTIKDAADVAIATMLSGIQVSRVELLDEVQ+RA+
Sbjct: 293 TLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQIRAI 352

Query: 370 NIANGKNLPELPTLMFEFIGT 390
           N+ANGKNLPE PTLMFEFIGT
Sbjct: 353 NMANGKNLPEAPTLMFEFIGT 373

Length = 555
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|129482 TIGR00387, glcD, glycolate oxidase, subunit GlcD Back     alignment and domain information
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information
>gnl|CDD|183043 PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>gnl|CDD|236893 PRK11282, glcE, glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>gnl|CDD|233525 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases Back     alignment and domain information
>gnl|CDD|217283 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain Back     alignment and domain information
>gnl|CDD|215258 PLN02465, PLN02465, L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>gnl|CDD|233524 TIGR01677, pln_FAD_oxido, plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>gnl|CDD|130740 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase Back     alignment and domain information
>gnl|CDD|130737 TIGR01676, GLDHase, galactonolactone dehydrogenase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 403
PLN02805 555 D-lactate dehydrogenase [cytochrome] 100.0
PRK11230 499 glycolate oxidase subunit GlcD; Provisional 100.0
TIGR00387 413 glcD glycolate oxidase, subunit GlcD. This protein 100.0
PRK11183 564 D-lactate dehydrogenase; Provisional 100.0
COG0277 459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 100.0
KOG1231 505 consensus Proteins containing the FAD binding doma 100.0
KOG1232 511 consensus Proteins containing the FAD binding doma 100.0
PLN02441 525 cytokinin dehydrogenase 100.0
PRK11282 352 glcE glycolate oxidase FAD binding subunit; Provis 100.0
TIGR01676 541 GLDHase galactonolactone dehydrogenase. This model 100.0
TIGR01678 438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 100.0
TIGR01679 419 bact_FAD_ox FAD-linked oxidoreductase. This model 99.98
TIGR01677 557 pln_FAD_oxido plant-specific FAD-dependent oxidore 99.98
KOG1233 613 consensus Alkyl-dihydroxyacetonephosphate synthase 99.97
PLN02465 573 L-galactono-1,4-lactone dehydrogenase 99.96
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.96
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.94
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.93
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.92
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.91
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.9
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.89
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.88
KOG4730 518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.88
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.86
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.83
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.83
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.82
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.78
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.69
KOG1262 543 consensus FAD-binding protein DIMINUTO [General fu 99.61
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.52
PF00941171 FAD_binding_5: FAD binding domain in molybdopterin 97.27
PRK09799258 putative oxidoreductase; Provisional 97.16
TIGR03312257 Se_sel_red_FAD probable selenate reductase, FAD-bi 96.92
PF02913 248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 96.82
TIGR02963467 xanthine_xdhA xanthine dehydrogenase, small subuni 96.57
PRK09971291 xanthine dehydrogenase subunit XdhB; Provisional 95.85
PLN02906 1319 xanthine dehydrogenase 94.58
PLN00192 1344 aldehyde oxidase 94.27
TIGR02969 1330 mam_aldehyde_ox aldehyde oxidase. Members of this 93.81
TIGR03195321 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta s 93.34
TIGR03199264 pucC xanthine dehydrogenase C subunit. This gene h 92.38
COG4630493 XdhA Xanthine dehydrogenase, iron-sulfur cluster a 91.86
COG1319284 CoxM Aerobic-type carbon monoxide dehydrogenase, m 90.16
PF09330 291 Lact-deh-memb: D-lactate dehydrogenase, membrane b 86.63
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-57  Score=476.58  Aligned_cols=374  Identities=79%  Similarity=1.216  Sum_probs=307.7

Q ss_pred             hhccccceeccccccCcccccccccccccccCCCCCCCCCcccccccchhHHHHHHhhhcccccccCCCCccCCCCCCcc
Q 015624           11 LRSSSKSILSSLRTSKFSTQNTRTRTLITLSSDNSSRNGTPFQLFSASLLPLALAASAGSLAMQSQTHPSLCDSSALDSR   90 (403)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (403)
                      +|+.+|.++-+.+++.+..++...++   +.+|+.++. .+.+|. ...+.++.+.+++..+.-.....++|+.+..+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (555)
T PLN02805          2 LRSLLRTSRPNRALPSFPKSTLDVTV---TTPVKGRRR-LPTSWS-SSLLPLAIAASAGSLAYLNQSNPSLCDSSDLDSR   76 (555)
T ss_pred             cchhhhhccccccCCCCcccccCccc---cccccCCCC-CCCccc-cccchHHHHHHHHHHHHhcCcceeeccccccccc
Confidence            44555555555555544444322221   333333333 333331 1112333333332222222334466765555554


Q ss_pred             ccccCCCcccceeecCCCCCCcHHHHHHHHHhcCCCeeeChhhhhhccCCCCCcCcCCCCCcEEEEcCCHHHHHHHHHHH
Q 015624           91 DVNIGGKGSTEYVVKGSHKEIPQELVDELKAICQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCC  170 (403)
Q Consensus        91 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~L~~~lg~~v~~~~~~~~~~~~~~~s~~~~~~~P~~Vv~P~s~eeV~~iv~~a  170 (403)
                         +|++...++..+..++.++++++++|++++++++.++.+++..|+++...+++....|.+|++|+|++||+++|++|
T Consensus        77 ---~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~v~~~~~~~~~y~~d~~~~~~~~~~P~~Vv~P~s~eeV~~ivk~a  153 (555)
T PLN02805         77 ---VGGKGSTEFVVKGEHKLVPQELIDELKAILQDNMTLDYDERYFHGKPQNSFHKAVNIPDVVVFPRSEEEVSKIVKSC  153 (555)
T ss_pred             ---ccCccccchhhccccccchHHHHHHHHHhcCCceecCHHHHHHhccCcccccccCCCCCEEEEcCCHHHHHHHHHHH
Confidence               79999999998888888889999999999998899999999999887654544445799999999999999999999


Q ss_pred             HhCCCCeeeeCCCCCCCcccccCCCcEEEEcCCCCCcEEeeecCcEEEEccCCCHHHHHHHHhcCCCeecCCCCcccccc
Q 015624          171 DKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIG  250 (403)
Q Consensus       171 ~~~~~pv~~~GgG~s~~g~~~~~~~gvvIdl~~mn~i~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~p~~~~~~~TvG  250 (403)
                      +++++|++|+|||||+.|++++.++|++|||++||+|+++|+++.+++||||++|.+|+++|.++|+++|++|++.+|||
T Consensus       154 ~~~~ipv~prGgGts~~G~~~~~~ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~L~~~L~~~Gl~~p~~p~~~~TIG  233 (555)
T PLN02805        154 NKYKVPIVPYGGATSIEGHTLAPHGGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLELNEYLEPYGLFFPLDPGPGATIG  233 (555)
T ss_pred             HHCCCcEEEECCCCCCCCCccCCCCEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHHHHHHHHHcCCEeCCCCccccChh
Confidence            99999999999999999999887789999999999999999999999999999999999999999999999999889999


Q ss_pred             ccccccccCCCccccccccceEEEEEEEeCCCeEEEcccccccccccccchhhhhccCCceeEEEEEEEEeEecCCccEE
Q 015624          251 GMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVV  330 (403)
Q Consensus       251 G~ia~n~~G~~s~~yG~~~D~V~~levV~~dG~iv~~~~~~~~~~~g~dL~~~~~Gs~GtlGIIT~~tLkl~p~p~~~~~  330 (403)
                      |++++|++|..+.+||.++|+|+++|||++||++++++.+..++..||||+|+++||+|+|||||+++||++|.|+....
T Consensus       234 G~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~  313 (555)
T PLN02805        234 GMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVV  313 (555)
T ss_pred             hHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHhccCCCceEEEEEEEEEeecCCcceEE
Confidence            99999999999999999999999999999999999987776777889999999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHcCCCceEEEecCHHHHHHHHHhhCCCCCCCCceEEEEcCChh
Q 015624          331 ATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGKNLPELPTLMFEFIGTRE  392 (403)
Q Consensus       331 ~~~~f~~~~~a~~~~~~i~~~~~~~~~~e~~D~~~~~~~~~~~~~~~p~~~~l~~e~~g~~~  392 (403)
                      .++.|++++++.+++.++++.++.|.++|+||+..++.++...+..+|+.+.|++||+|+++
T Consensus       314 ~~~~f~~~~~a~~av~~i~~~g~~psa~ElmD~~~~~~~~~~~~~~~p~~~~Ll~e~~g~~~  375 (555)
T PLN02805        314 AMCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQIRAINMANGKNLPEAPTLMFEFIGTEA  375 (555)
T ss_pred             EEEEcCCHHHHHHHHHHHHhCCCCcEEEEEECHHHHHHHHHhcCCCCCcceEEEEEEecCcH
Confidence            99999999999999999998999999999999999888776655567777899999999865

>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain Back     alignment and domain information
>PRK09799 putative oxidoreductase; Provisional Back     alignment and domain information
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit Back     alignment and domain information
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional Back     alignment and domain information
>PLN02906 xanthine dehydrogenase Back     alignment and domain information
>PLN00192 aldehyde oxidase Back     alignment and domain information
>TIGR02969 mam_aldehyde_ox aldehyde oxidase Back     alignment and domain information
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit Back     alignment and domain information
>TIGR03199 pucC xanthine dehydrogenase C subunit Back     alignment and domain information
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism] Back     alignment and domain information
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion] Back     alignment and domain information
>PF09330 Lact-deh-memb: D-lactate dehydrogenase, membrane binding; InterPro: IPR015409 Members of this entry are predominantly found in prokaryotic D-lactate dehydrogenase, forming the cap-membrane-binding domain, which consists of a large seven-stranded antiparallel beta-sheet flanked on both sides by alpha-helices Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query403
3pm9_A 476 Crystal Structure Of A Putative Dehydrogenase (Rpa1 2e-23
4bc7_A 658 Mammalian Alkyldihydroxyacetonephosphate Synthase: 5e-23
4bby_A 658 Mammalian Alkyldihydroxyacetonephosphate Synthase: 5e-23
4bca_A 658 Mammalian Alkyldihydroxyacetonephosphate Synthase: 6e-23
2uuu_A 584 Alkyldihydroxyacetonephosphate Synthase In P212121 7e-23
1wve_A 520 P-Cresol Methylhydroxylase: Alteration Of The Struc 1e-08
1dii_A 521 Crystal Structure Of P-Cresol Methylhydroxylase At 1e-08
2bvf_A 459 Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase Fr 2e-06
1w1m_A 560 Structure Of The Octameric Flavoenzyme Vanillyl-alc 9e-06
1w1k_A 560 Structure Of The Octameric Flavoenzyme Vanillyl-Alc 9e-06
2vao_A 560 Structure Of The Octameric Flavoenzyme Vanillyl-Alc 9e-06
1w1j_A 560 Structure Of The Octameric Flavoenzyme Vanillyl-Alc 1e-05
1w1l_A 560 Structure Of The Octameric Flavoenzyme Vanillyl-Alc 1e-05
1e8f_A 560 Structure Of The H61t Mutant Of The Flavoenzyme Van 1e-05
1qlt_A 560 Structure Of The H422a Mutant Of The Flavoenzyme Va 1e-05
2exr_A 524 X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE ( 2e-05
1dzn_A 560 Asp170ser Mutant Of Vanillyl-Alcohol Oxidase Length 2e-05
1e0y_A 560 Structure Of The D170sT457E DOUBLE MUTANT OF VANILL 2e-05
3fw8_A 495 Structure Of Berberine Bridge Enzyme, C166a Variant 1e-04
3fwa_A 497 Structure Of Berberine Bridge Enzyme, C166a Variant 1e-04
4g3t_A 403 Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal F 1e-04
3fw7_A 498 Structure Of Berberine Bridge Enzyme, H104a Variant 1e-04
4aut_A 468 Crystal Structure Of The Tuberculosis Drug Target D 1e-04
2yvs_A219 Crystal Structure Of Glycolate Oxidase Subunit Glce 1e-04
3fw9_A 495 Structure Of Berberine Bridge Enzyme In Complex Wit 2e-04
4ec3_A 519 Structure Of Berberine Bridge Enzyme, H174a Variant 2e-04
3gsy_A 519 Structure Of Berberine Bridge Enzyme In Complex Wit 2e-04
3d2d_A 538 Structure Of Berberine Bridge Enzyme In Complex Wit 2e-04
4fdn_A 481 Mycobacterium Tuberculosis Dpre1 In Complex With Ct 3e-04
3vte_A 518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 3e-04
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution Length = 476 Back     alignment and structure 
Iteration: 1

 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 94/191 (49%), Gaps = 2/191 (1%)
Query: 153 IIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHI 212
           +++ P S +EV  I K  ++ +V ++P GG T + G     NG V I L     ++ +  
Sbjct: 54  LVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGGQTPHNGEVVISLKRXDKIREIDT 113
Query: 213 EDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGA--TIGGMCATRCSGSLAVRYGTMRD 270
               + VE G     + E        FPL  G     TIGG  +T   G+ A+ YG  RD
Sbjct: 114 SSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLARD 173
Query: 271 NVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVV 330
             + ++VVLA+G V    S+ +K   GYDL  L IG+EGTLGIIT  TL+L   P+    
Sbjct: 174 XALGVEVVLADGRVXNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVET 233
Query: 331 ATCNFPTIKDA 341
           A     +  DA
Sbjct: 234 AFVGLQSPDDA 244
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Arg419his Mutant Length = 658 Back     alignment and structure
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-Type Length = 658 Back     alignment and structure
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Tyr578phe Mutant Length = 658 Back     alignment and structure
>pdb|2UUU|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P212121 Length = 584 Back     alignment and structure
>pdb|1WVE|A Chain A, P-Cresol Methylhydroxylase: Alteration Of The Structure Of The Flavoprotein Subunit Upon Its Binding To The Cytochrome Subunit Length = 520 Back     alignment and structure
>pdb|1DII|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A Resolution Length = 521 Back     alignment and structure
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From Arthrobacter Nicotinovorans. Crystal Form 3 (P1) Length = 459 Back     alignment and structure
>pdb|1W1M|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol Oxidase: Glu502gly Mutant Length = 560 Back     alignment and structure
>pdb|1W1K|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol Oxidase: Ile238thr Mutant Length = 560 Back     alignment and structure
>pdb|2VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol Oxidase In Complex With Isoeugenol Length = 560 Back     alignment and structure
>pdb|1W1J|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol Oxidase: The505ser Mutant Length = 560 Back     alignment and structure
>pdb|1W1L|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol Oxidase: Phe454tyr Mutant Length = 560 Back     alignment and structure
>pdb|1E8F|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme Vanillyl-Alcohol Oxidase In The Apo Form Length = 560 Back     alignment and structure
>pdb|1QLT|A Chain A, Structure Of The H422a Mutant Of The Flavoenzyme Vanillyl-Alcohol Oxidase Length = 560 Back     alignment and structure
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX) FROM Arabidopsis Thaliana At5g21482 Length = 524 Back     alignment and structure
>pdb|1DZN|A Chain A, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase Length = 560 Back     alignment and structure
>pdb|1E0Y|A Chain A, Structure Of The D170sT457E DOUBLE MUTANT OF VANILLYL- Alcohol Oxidase Length = 560 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|4G3T|A Chain A, Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal Form Length = 403 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|4AUT|A Chain A, Crystal Structure Of The Tuberculosis Drug Target Decaprenyl-Phosphoryl-Beta-D-Ribofuranose-2- Oxidoreductase (Dpre1) From Mycobacterium Smegmatis Length = 468 Back     alignment and structure
>pdb|2YVS|A Chain A, Crystal Structure Of Glycolate Oxidase Subunit Glce From Thermus Thermophilus Hb8 Length = 219 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure
>pdb|4FDN|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 - Hexagonal Crystal Form Length = 481 Back     alignment and structure
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query403
2uuu_A 584 Alkyldihydroxyacetonephosphate synthase; transfera 1e-120
1wvf_A 520 4-cresol dehydrogenase [hydroxylating] flavoprote 1e-114
1e8g_A 560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 1e-87
3pm9_A 476 Putative oxidoreductase; putative D-2-hydroxygluta 4e-73
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 4e-63
4feh_A 481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 2e-41
2vfr_A 422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 1e-39
3js8_A 540 Cholesterol oxidase; cholsterol, organic solvent s 1e-37
1w1o_A 534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 9e-37
2i0k_A 561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 2e-34
2bvf_A 459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 1e-32
3rja_A 473 Carbohydrate oxidase; protein-substrate analogue c 3e-28
3vte_A 518 Tetrahydrocannabinolic acid synthase; BI-covalent 5e-28
1zr6_A 503 Glucooligosaccharide oxidase; alpha + beta, flavoe 1e-27
3fw9_A 495 Reticuline oxidase; BI-covalent flavinylation, N-g 2e-27
3pop_A 501 GILR oxidase; FAD binding protein, gilvocarcin, gi 3e-27
2exr_A 524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 4e-27
2wdx_A 523 Putative hexose oxidase; oxidoreductase-antibiotic 4e-26
2ipi_A 521 Aclacinomycin oxidoreductase (aknox); anthracyclin 1e-25
2y3s_A 530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 2e-24
1f0x_A 571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 4e-24
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 7e-07
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584 Back     alignment and structure
 Score =  360 bits (926), Expect = e-120
 Identities = 80/320 (25%), Positives = 130/320 (40%), Gaps = 37/320 (11%)

Query: 110 EIPQELVDELKAICQDD-MTMDYEERYIHGK-------PQNSFHKAVNIPDIIVFPRSED 161
           +   E V ELKA    D +  D   R  H          +    +  N PD+IV P S +
Sbjct: 89  KQYPEFVRELKAFFLPDQLKDDKLARITHTFGKSLRDLIRVRIGQVKNAPDLIVLPHSHE 148

Query: 162 EVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNG---GVCIDLSLMKSVKALHIEDMDVV 218
           EV ++V+   K+ V IIP GG ++I G     +     V ID+  M  V  +   +M   
Sbjct: 149 EVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVSNERFTVSIDMRRMNKVLWVDRREMTAC 208

Query: 219 VEPGIGWMELNEYLEPYGLFFPLDPGPG--ATIGGMCATRCSGSLAVRYGTMRDNVINLK 276
           ++ GI   EL + L   G+    DP     +T+GG  AT  SG  + +YG + D  ++ +
Sbjct: 209 IQVGIMGPELEKQLHKQGVSLGHDPDSFEFSTLGGWLATCSSGHQSDKYGDIEDMAVSFR 268

Query: 277 VVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFP 336
            V   G +        +S AG +   +I+GSEGTLGIITE  +++  +PQ        FP
Sbjct: 269 TVTPTGTLELR--NGARSGAGINYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLFP 326

Query: 337 TIKDAADVAIATMLSGIQVSRVELLDEVQVRAVN----------------------IANG 374
           T   A         S +  + + + D  + +                             
Sbjct: 327 TFAHAVSALQQIRSSEVIPTMIRVYDPEETQLSFAWKPSKGAVSEFTSAMVKKYLHYIRS 386

Query: 375 KNLPELPTLMFEFIGTREMI 394
            +   +   +  F G ++++
Sbjct: 387 FDFKNVCLSIIGFEGPKKVV 406
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Length = 476 Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Length = 219 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Length = 571 Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Length = 322 Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Length = 326 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query403
4bby_A 658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 100.0
3pm9_A 476 Putative oxidoreductase; putative D-2-hydroxygluta 100.0
2uuu_A 584 Alkyldihydroxyacetonephosphate synthase; transfera 100.0
1f0x_A 571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 100.0
1e8g_A 560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 100.0
1wvf_A 520 4-cresol dehydrogenase [hydroxylating] flavoprote 100.0
2exr_A 524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 100.0
1w1o_A 534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 100.0
3tsh_A 500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
2bvf_A 459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
3rja_A 473 Carbohydrate oxidase; protein-substrate analogue c 100.0
1zr6_A 503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
3fw9_A 495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
4feh_A 481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 100.0
3vte_A 518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
2wdx_A 523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
2ipi_A 521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
3pop_A 501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 100.0
2y3s_A 530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
2vfr_A 422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 100.0
3js8_A 540 Cholesterol oxidase; cholsterol, organic solvent s 99.96
2i0k_A 561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.96
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.96
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.95
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.95
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.92
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.89
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 98.58
2w3s_A462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 98.07
1n62_C288 Carbon monoxide dehydrogenase medium chain; CODH, 97.85
3nvz_B305 Xanthine dehydrogenase/oxidase; hydroxylase, homod 97.59
1t3q_C288 Quinoline 2-oxidoreductase medium subunit; QOR, mo 96.99
3hrd_C296 Nicotinate dehydrogenase FAD-subunit; selenium lig 94.96
3unc_A 1332 Xanthine dehydrogenase/oxidase; oxidoreductase; HE 92.78
1rm6_B324 4-hydroxybenzoyl-COA reductase beta subunit; xanth 91.55
3zyv_A 1335 AOH1; oxidoreductase, molybdenum cofactor; HET: MT 86.1
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
Probab=100.00  E-value=8.9e-48  Score=412.59  Aligned_cols=263  Identities=27%  Similarity=0.419  Sum_probs=235.1

Q ss_pred             CCCCcHHHHHHHHHhcCCCeeeChhhhhhccCCCC--C-----cCcCCCCCcEEEEcCCHHHHHHHHHHHHhCCCCeeee
Q 015624          108 HKEIPQELVDELKAICQDDMTMDYEERYIHGKPQN--S-----FHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPY  180 (403)
Q Consensus       108 ~~~~~~~~~~~L~~~lg~~v~~~~~~~~~~~~~~~--s-----~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~  180 (403)
                      ...++++++++|+++.++ ..++.+++..|+..+.  .     ...+...|++||+|+|+|||+++|++|+++++||+|+
T Consensus       157 ~~~~~~~~~~~l~~~~~~-~~~~~~~r~~h~~g~s~~d~~~~~~g~~~~~P~aVV~P~s~eeV~~iv~~A~~~~ipVvpr  235 (658)
T 4bby_A          157 PSIVNEDFLHELKKTNIS-YSQEADDRVFRAHGHCLHEIFLLREGMFERIPDIVLWPTCHDDVVKIVNLACKYNLCIIPI  235 (658)
T ss_dssp             CCCCCHHHHHHHHHHTCE-EECCHHHHHHTSCCSCHHHHHHHHSSCCSCCCSEEEECCSHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCHHHHHHHHHhccc-ccCchHHHhhhcCCCCHHHHHHHhCCcccCCcCEEEeeCCHHHHHHHHHHHHHCCCeEEEE
Confidence            345678999999998765 5678777776654321  0     1123468999999999999999999999999999999


Q ss_pred             CCCCCCCcccccC----CCcEEEEcCCCCCcEEeeecCcEEEEccCCCHHHHHHHHhcCCCeecCCCCc--ccccccccc
Q 015624          181 GGATSIEGHTLSP----NGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGP--GATIGGMCA  254 (403)
Q Consensus       181 GgG~s~~g~~~~~----~~gvvIdl~~mn~i~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~p~~~~~--~~TvGG~ia  254 (403)
                      |||||+.|+..+.    .++|+|||++||+|+++|+++.+++||||++|.+|+++|.++|++||++|++  .+||||+++
T Consensus       236 GgGTsl~GG~~~~~~~~~ggVvLDlsrMnrIleiD~~~~~atVeaGv~~~~L~~~L~~~Gl~lp~dP~S~~~aTIGG~iA  315 (658)
T 4bby_A          236 GGGTSVSYGLMCPADETRTIISLDTSQMNRILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWIS  315 (658)
T ss_dssp             SSCCCSSSTTCCCTTCCSCEEEEECTTCCCEEEEETTTTEEEEETTCBHHHHHHHHHHHTEECCCCCTTTTTCBHHHHHH
T ss_pred             CCCcCCCCCCCCCCCCCCcEEEEECccCCCcEEEcCCCCEEEEecCchHHHHHHHHHHcCCccCCCCCCccccEEeehhh
Confidence            9999999888764    3579999999999999999999999999999999999999999999999875  599999999


Q ss_pred             ccccCCCccccccccceEEEEEEEeCCCeEEEcccccccccccccchhhhhccCCceeEEEEEEEEeEecCCccEEEEEe
Q 015624          255 TRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCN  334 (403)
Q Consensus       255 ~n~~G~~s~~yG~~~D~V~~levV~~dG~iv~~~~~~~~~~~g~dL~~~~~Gs~GtlGIIT~~tLkl~p~p~~~~~~~~~  334 (403)
                      +|++|..+.+||.++|+|+++|||++||++++.+ +..|++.||||+++++||||||||||+++|||+|.|+.....++.
T Consensus       316 tna~G~~s~rYG~~~d~VlgleVVlpdG~i~~~~-~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~  394 (658)
T 4bby_A          316 TRASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSC-QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVA  394 (658)
T ss_dssp             HTCCCTTHHHHCCHHHHEEEEEEEETTEEEECSC-CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEE
T ss_pred             cCCCCCCccCcCCHHHheeeEEEEeCCCcccccc-cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccc
Confidence            9999999999999999999999999999998754 446888999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCCceEEEecCHHHHHHHHHh
Q 015624          335 FPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIA  372 (403)
Q Consensus       335 f~~~~~a~~~~~~i~~~~~~~~~~e~~D~~~~~~~~~~  372 (403)
                      |++++++.+++.++.+.++.|.++|+||+..++.....
T Consensus       395 f~d~~~a~~av~~i~~~~~~psa~El~D~~~~~~~~~~  432 (658)
T 4bby_A          395 FPNFEQGVACLREIAKQRCAPASIRLMDNQQFQFGHAL  432 (658)
T ss_dssp             ESSHHHHHHHHHHHHHTTCCCSEEEEECHHHHHHHHHT
T ss_pred             cCCchhhhhhHHHHHHcCCCccccccccHHHHHHHHhh
Confidence            99999999999999999999999999999988766543
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B* Back     alignment and structure
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 Back     alignment and structure
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A* Back     alignment and structure
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B* Back     alignment and structure
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 403
d1e8ga2268 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fung 4e-34
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 2e-33
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 3e-30
d1wvfa2236 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cres 4e-30
d1f0xa2265 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Esche 5e-23
d1e8ga1 287 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fu 1e-13
d1uxya1198 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenol 8e-11
d1hska1194 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetyleno 2e-09
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Length = 268 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Vanillyl-alcohol oxidase
species: Fungus (Penicillium simplicissimum) [TaxId: 69488]

 Score =  125 bits (314), Expect = 4e-34
 Identities = 50/254 (19%), Positives = 91/254 (35%), Gaps = 43/254 (16%)

Query: 113 QELVDELKAICQDD-----------MTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSED 161
            E + ++  I   +           +   Y +      P +   +   +   IV PR+  
Sbjct: 17  NEFIQDIIRIVGSENVEVISSKDQIVDGSYMKPTHTHDPTHVMDQDYFLASAIVAPRNVA 76

Query: 162 EVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPN---GGVCIDLSLMKSVKALHIEDMDVV 218
           +V  IV   +K   P+ P     +      +P      V      M  V  +++E    V
Sbjct: 77  DVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCV 136

Query: 219 VEPGIGWMELNEYLEPYGL----FFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVIN 274
           VEPG+ + +L+ YLE   L    +  +    G ++ G    R  G     YG        
Sbjct: 137 VEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGY--TPYGDHWMMHSG 194

Query: 275 LKVVLANGDVVKTASRA-------------RKSAAGYDLTRLI----------IGSEGTL 311
           ++VVLANG++++T   A              +      +  L           + S+  +
Sbjct: 195 MEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNM 254

Query: 312 GIITEVTLRLQKIP 325
           GI+T++ + L   P
Sbjct: 255 GIVTKIGIWLMPNP 268
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Length = 236 Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 265 Back     information, alignment and structure
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Length = 287 Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 198 Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Length = 194 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query403
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 100.0
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 100.0
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 100.0
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.97
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.97
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.95
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.91
d1f0xa1 294 D-lactate dehydrogenase {Escherichia coli [TaxId: 98.05
d1ffvc2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 97.01
d1v97a6223 Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [ 96.88
d1jroa4167 Xanthine dehydrogenase chain A, domain 3 {Rhodobac 96.73
d1n62c2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 96.2
d1t3qc2176 Quinoline 2-oxidoreductase medium subunit QorM {Ps 95.07
d1rm6b2216 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, 94.25
d1wvfa1 279 Flavoprotein subunit of p-cresol methylhydroxylase 89.9
d1e8ga1 287 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 85.92
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Flavoprotein subunit of p-cresol methylhydroxylase
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=2.4e-42  Score=324.80  Aligned_cols=213  Identities=23%  Similarity=0.343  Sum_probs=188.9

Q ss_pred             HHHHHHHHHhcCC-CeeeChhhhhhccCCCCCcCcCCCCCcEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCcccc
Q 015624          113 QELVDELKAICQD-DMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTL  191 (403)
Q Consensus       113 ~~~~~~L~~~lg~-~v~~~~~~~~~~~~~~~s~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~  191 (403)
                      ++++++|++++|+ +|.+++++...|.+++++..+....|.+||+|+|+|||+++|++|+++++|+.++|+||++.++..
T Consensus        13 ~~~v~~l~~ivG~~~V~~~~~~~~~y~~d~~~~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~~i~~~g~G~s~~~g~~   92 (236)
T d1wvfa2          13 NKAVQKFRALLGDDNVLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNFGYGSA   92 (236)
T ss_dssp             HHHHHHHHHHHCGGGEECSHHHHHHHHCCCSSSCGGGGCCSEEEECCSHHHHHHHHHHHHHHTCCEEEESSCCCTTTTTT
T ss_pred             HHHHHHHHHHcCCccEEECHHHHHHHhCccccccccCcCCCEEEecCCHHHHHHHHHHHHcCCcceeccccccccccccc
Confidence            4578999999995 688898888888887655555567899999999999999999999999999999999999865443


Q ss_pred             c--CCCcEEEEcCCCCCcEEeeecCcEEEEccCCCHHHHHHHHhcCCCeecCCCCcccccccccc-ccccCCCccccccc
Q 015624          192 S--PNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCA-TRCSGSLAVRYGTM  268 (403)
Q Consensus       192 ~--~~~gvvIdl~~mn~i~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~p~~~~~~~TvGG~ia-~n~~G~~s~~yG~~  268 (403)
                      .  .+++|+|||++||+|+++|+++++++||||++|.||+++|.++|+.++++++..+++||.++ ++++|..+.+||.+
T Consensus        93 ~~~~~~~ividl~~mn~i~~id~~~~~v~v~aG~~~~~l~~~l~~~g~~~~~~~~~~~~~gG~i~~~~~~G~~~~~yG~~  172 (236)
T d1wvfa2          93 APVQRGQVILDLKKMNKIIKIDPEMCYALVEPGVTFGQMYDYIQENNLPVMLSFSAPSAIAGPVGNTMDRGVGYTPYGEH  172 (236)
T ss_dssp             SCSSTTCEEEECTTCCCEEEEETTTTEEEECTTCCHHHHHHHHHHTTCSEECCCCSSCTTCCHHHHHHTTCBCSSTTCBG
T ss_pred             ccccceEEEeecccccchhhhcccccceehhhhhhhhhhHHHHhhhcccccccccccccccccccccccccccccccccc
Confidence            2  35789999999999999999999999999999999999999999999988887788887775 78999999999999


Q ss_pred             cceEEEEEEEeCCCeEEEcccccccccccccchhhhhc-------cCCceeEEEEEEEEeEecC
Q 015624          269 RDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIG-------SEGTLGIITEVTLRLQKIP  325 (403)
Q Consensus       269 ~D~V~~levV~~dG~iv~~~~~~~~~~~g~dL~~~~~G-------s~GtlGIIT~~tLkl~p~p  325 (403)
                      +|+|+++|||++||++++++....++..++++++...|       |+|+|||||+++||++|+|
T Consensus       173 ~d~v~~levVl~~G~iv~~~~~~~~~~~~~~~~~~~~G~~~~~l~SeGtlGIIt~~tlkl~P~P  236 (236)
T d1wvfa2         173 FMMQCGMEVVLANGDVYRTGMGGVPGSNTWQIFKWGYGPTLDGMFTQANYGICTKMGFWLMPKP  236 (236)
T ss_dssp             GGGEEEEEEECTTSCEEECGGGGSTTCSCTTTCSCCSSCCCHHHHTTSSSCEEEEEEEECEECC
T ss_pred             ccceeeeEEEcCCCcEEEeCCccCCCccHHHHHhcCcCccccccccccceEEEEEEEEEEEcCC
Confidence            99999999999999999987776666677777777666       8999999999999999987
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f0xa1 d.58.32.2 (A:274-567) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure