Citrus Sinensis ID: 015659

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400---
Protein Sequence
MACESVMTLEKGANLSDIDGEEEEPGEVIESAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAARGV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccEEEEEEEEEEccccEEcccccccccEEEEEccccccccHHHHHHccccccEEEEEEEEccccccccccccccccccEEEEEEEEEccEEcccccccccHHHHHHHccccccccccccEEEEEEEEEEccccccccccccccEEEEEEEEEEEEEccccEEEcccccccccEEEEccccccccHHHHHHHccccccEEEEEEccccccccccccccccccccccEEEEEEEEEEEEcccccccccHHHHHHHHHHHHHHcHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHcHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHccHHcccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccEEEEEEEEEEccccEEEEcccccccEEEEcccccccHHHHHHHHHcccccEEEEEEcHHcHcccccccccccccccEEEEEEEEEEEEccccccccccEEEEEEEccccccccccccEEEEEEEEEEcccEEccccccccccccEEEEEEEEEEccccEEccccccccccEEEEEccccccHHHHHHHHHcccccEEEEEEccccccccccccccccccccccEEEEEEEEEEEccccccEEEcccccHHHHcHEHccccHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHccccc
Coil and Loop (DISEMBL)
macesvmtlekganlsdidgeeeepgeviesaaplkvgeerglgnsgiKKKLLkngvdwdtpefgdevTIHYVGtlldgtkfdstrdrydpltfklgtgqvatgldngiitMKKRECAVftftlpselrfgvegrdslppnsvvQFEVELVSWITVVDLSKDGGIVKKILEkgerdaspgdldEVLVKYQVMLGdgtmvaktpEEGVEFYLKDVSYIarledgtvfekkgydgeqplefitDEEQVIAGLDRVAATMKKEEWAIVTINHeygfgnveakrdlatipsCAKLYYEVEMMDFIKEkvpwemnnqgkieaagrkkeegnllfkngkyeragkkynkaadcvsedgsfvddEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAARGV
Flexible Loop (DISEMBL)
macesvmtlekganlsdidgeeeepgeviesaaplkvgeerglgnsgikkkllkngvDWDTPEFGDEVTIHYVgtlldgtkfdsTRDRYDPltfklgtgqvatgldnGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWITvvdlskdggivkkilekgerdaspgdldEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEygfgnveakrdlATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKieaagrkkeegnlLFKNGKYERAGKKYNKaadcvsedgsfvddeqKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAARGV
Low Complexity Region (SEG)
MACESVMTLEKGANLSdidgeeeepgevieSAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAARGV
Disordered region (IsUnstruct)
***********************************************IKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEK********DLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMN****************LLFKNGKY*****KYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE*******
Disordered Region (DISOPRED)
******************************************LGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAK***ATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS**********SLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA*G*
Disordered Region (DISEMBL)
*********EKGANLSDI**********IESAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAARGV
Disordered Region (DISPRO)
****************************************RGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MACESVMTLEKGANLSDIDGEEEEPGEVIESAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAARGV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	403	2.2.26 [Sep-21-2011]
Q43207	559	70 kDa peptidyl-prolyl is	N/A	no	0.784	0.565	0.415	3e-65
Q9FJL3	578	Peptidyl-prolyl cis-trans	yes	no	0.789	0.550	0.411	6e-65
Q38931	551	Peptidyl-prolyl cis-trans	no	no	0.786	0.575	0.397	1e-62
P30416	458	Peptidyl-prolyl cis-trans	yes	no	0.779	0.685	0.356	5e-43
Q9QVC8	458	Peptidyl-prolyl cis-trans	yes	no	0.779	0.685	0.354	6e-43
Q9TRY0	459	Peptidyl-prolyl cis-trans	yes	no	0.838	0.736	0.335	1e-42
Q02790	459	Peptidyl-prolyl cis-trans	yes	no	0.779	0.684	0.345	2e-42
Q9XSI2	457	Peptidyl-prolyl cis-trans	N/A	no	0.779	0.687	0.333	4e-40
Q64378	456	Peptidyl-prolyl cis-trans	no	no	0.779	0.688	0.324	4e-40
P27124	458	Peptidyl-prolyl cis-trans	yes	no	0.776	0.683	0.344	7e-40

>sp|Q43207|FKB70_WHEAT 70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum GN=FKBP70 PE=1 SV=1

 Score =  249 bits (636), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 148/356 (41%), Positives = 208/356 (58%), Gaps = 40/356 (11%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + GI KK+LK G  W+ P+  DEV + Y   L DGT       + + + F +  G +   
Sbjct: 156 DGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGT----VVSKSEGVEFTVKDGHLCPA 211

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS------LPPNSVVQFEVELVSWITVVD 158
           L   + TMKK E  +    +  +  FG  GR +      +PPN+ +  ++ELVSW TV +
Sbjct: 212 LAKAVKTMKKGEKVLLA--VKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTE 269

Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
           +  D  I+KK+L++ E    P +              G +V              V    
Sbjct: 270 IGDDKKILKKVLKEXEGYERPNE--------------GAVVT-------------VKITG 302

Query: 219 RLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278
           +L+DGTVF KKG+D ++P EF TDEE VI GLDR    MKK E A+VTI  EY +G+ E+
Sbjct: 303 KLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTES 362

Query: 279 KRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAG 338
           K+D A +P  + + YEVE++ F+K+K  W++NN  KIEAAG KKEEGN LFK+GKY RA 
Sbjct: 363 KQD-AIVPPNSTVIYEVELVSFVKDKESWDLNNSEKIEAAGTKKEEGNALFKSGKYARAS 421

Query: 339 KKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394
           K+Y KAA  +  D SF +DE+K  K L+++C LN+AAC LKLKDY+ A +LC+KV+
Sbjct: 422 KRYEKAAKFIEYDTSFSEDEKKQSKQLKITCNLNNAACKLKLKDYKQAEKLCTKVL 477

PPIases accelerate the folding of proteins during protein synthesis.
Triticum aestivum (taxid: 4565)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q9FJL3|FKB65_ARATH Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana GN=FKBP65 PE=1 SV=1

 Score =  248 bits (633), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 148/360 (41%), Positives = 213/360 (59%), Gaps = 42/360 (11%)

Query: 44  GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVAT 103
           G+ G+ KK++  G  W+ P+  DEV + Y   L DGT       + D + F +  G    
Sbjct: 160 GDGGVSKKIIVEGEKWEKPKDLDEVYVKYEARLEDGT----IVGKSDGVEFTVKEGHFCP 215

Query: 104 GLDNGIITMKKRECAVFTFTLPSELRFGVEGRDS-------LPPNSVVQFEVELVSWITV 156
            L   + TMK+ E  + T  +  +  FG  GR +       +PPN+ +Q ++ELVSW TV
Sbjct: 216 ALSKAVKTMKRGEKVLLT--VKPQYGFGEFGRPASDGLQAAIPPNATLQIDLELVSWKTV 273

Query: 157 VDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSY 216
           V+++ D  ++KKIL++GE                          + P EG    LK    
Sbjct: 274 VEVTDDRKVIKKILKEGEG------------------------YERPNEGAIVKLK---L 306

Query: 217 IARLEDGT-VFEKKGYD-GEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFG 274
           I +L+DGT VF KKG++  E+P EF  DEEQVI GL++    MKK E A++TI+ EY FG
Sbjct: 307 IGKLQDGTTVFVKKGHEEDEEPFEFKIDEEQVIEGLEKAVMGMKKGEVALITISPEYAFG 366

Query: 275 NVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKY 334
           + E+K++LA IP  + +YYEVE++ FIKEK  W+MN Q +IEAAG+KKEEGN+LFK GKY
Sbjct: 367 SSESKQELAVIPPNSTVYYEVELVSFIKEKESWDMNTQERIEAAGKKKEEGNVLFKAGKY 426

Query: 335 ERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394
            RA K+Y +    +  D +F ++E+K  K L+++C LN AAC LKLKDY+ A +L +KV+
Sbjct: 427 ARASKRYERGVKYIEYDSTFDEEEKKKSKDLKIACNLNDAACKLKLKDYKEAAKLSTKVL 486

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Co-chaperone that negatively modulates thermotolerance by interacting with FKBP62 and decreasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family. Plays a positive role in tolerance to intracellular acid stress by maintaining the pH homeostasis.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q38931|FKB62_ARATH Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana GN=FKBP62 PE=1 SV=2

 Score =  240 bits (613), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 142/357 (39%), Positives = 209/357 (58%), Gaps = 40/357 (11%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ KK+L  G  W+ P+  DEV + +   L DGT       + D + F +  G     
Sbjct: 153 DGGVFKKILAVGEKWENPKDLDEVLVKFEAKLEDGT----VVGKSDGVEFTVKDGHFCPA 208

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS------LPPNSVVQFEVELVSWITVVD 158
           L   + TMKK E  + T  +  +  FG +G+ +      +PPN+ ++  +ELVSW TV +
Sbjct: 209 LTKAVKTMKKGEKVLLT--VKPQYGFGEKGKPASAGEGAVPPNATLEINLELVSWKTVSE 266

Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
           ++ D  +VKK+L++G+    P +              G +V              V  I 
Sbjct: 267 VTDDNKVVKKVLKEGDGYERPNE--------------GAVVK-------------VKLIG 299

Query: 219 RLEDGTVFEKKGY-DGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE 277
           +L+DGTVF KKG+ + E+P EF TDEEQV+ GLDR    MKK E A+VTI+ EY FG+ E
Sbjct: 300 KLQDGTVFLKKGHGENEEPFEFKTDEEQVVDGLDRAVMKMKKGEVALVTIDPEYAFGSNE 359

Query: 278 AKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERA 337
           ++++LA +P  + + YEV+++ F KE+  W+MN + KIEAA +KKEEGN  FK GKY  A
Sbjct: 360 SQQELAVVPPNSTVTYEVDLLTFDKERESWDMNTEEKIEAASKKKEEGNSKFKGGKYSLA 419

Query: 338 GKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394
            K+Y KA   +  D SF ++E+K  K+L+V+C LN AAC LKLKDY+ A +LC+KV+
Sbjct: 420 SKRYEKAVKFIEYDTSFSEEEKKQAKALKVACNLNDAACKLKLKDYKQAEKLCTKVL 476

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Co-chaperone that positively modulates thermotolerance by interacting with HSP90.1 and increasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P30416|FKBP4_MOUSE Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Mus musculus GN=Fkbp4 PE=1 SV=5

 Score =  175 bits (444), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 126/353 (35%), Positives = 177/353 (50%), Gaps = 39/353 (11%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +TP  GD V +HY G LLDGTKFDS+ DR D  +F LG G+V   
Sbjct: 30  DEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKA 89

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWITVVDLSK-- 161
            D  + TMK  E  V   T   E  +G  G    +PPN+ + FEVEL  +    DL++  
Sbjct: 90  WDIAVATMKVGE--VCHITCKPEYAYGAAGSPPKIPPNATLVFEVELFEF-KGEDLTEEE 146

Query: 162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE 221
           DGGI+++I  +GE  A P D              G MV    E  +E Y KD  +  R  
Sbjct: 147 DGGIIRRIRTRGEGYARPND--------------GAMV----EVALEGYHKDRLFDQREL 188

Query: 222 DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRD 281
              V E +  D             +  GL+     M+K E +IV +   Y FG+V  +R 
Sbjct: 189 CFEVGEGESLD-------------LPCGLEEAIQRMEKGEHSIVYLKPSYAFGSVGKER- 234

Query: 282 LATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKY 341
              IP  A+L YEV +  F K K  WEM++  K+E +   KE G   FK GKY++A  +Y
Sbjct: 235 -FQIPPHAELRYEVRLKSFEKAKESWEMSSAEKLEQSNIVKERGTAYFKEGKYKQALLQY 293

Query: 342 NKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394
            K    +  + SF  +E + V +LR++  LN A C LKL+ +  AIE C+K +
Sbjct: 294 KKIVSWLEYESSFSGEEMQKVHALRLASHLNLAMCHLKLQAFSAAIESCNKAL 346

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9QVC8|FKBP4_RAT Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Rattus norvegicus GN=Fkbp4 PE=1 SV=3

 Score =  175 bits (443), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 125/353 (35%), Positives = 177/353 (50%), Gaps = 39/353 (11%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +T   GD V +HY G LLDGTKFDS+ DR D  +F LG G+V   
Sbjct: 30  DEGVLKVIKREGTGTETAMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKA 89

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWITVVDLSKD- 162
            D  + TMK  E  V   T   E  +G  G    +PPN+ + FEVEL  +    DL++D 
Sbjct: 90  WDIAVATMKVGE--VCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF-KGEDLTEDE 146

Query: 163 -GGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE 221
            GGI+++I  +GE  A P D              G MV    E  +E Y  D  +  R  
Sbjct: 147 DGGIIRRIRTRGEGYARPND--------------GAMV----EVALEGYYNDRLFDQREL 188

Query: 222 DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRD 281
              V E +  D             +  GL+     M+K E +IV +   Y FG+V  +R 
Sbjct: 189 CFEVGEGESLD-------------LPCGLEEAIQRMEKGEHSIVYLKPSYAFGSVGKER- 234

Query: 282 LATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKY 341
              IP  A+L YEV +  F K K  WEMN++ K+E +   KE G + FK GKY++A  +Y
Sbjct: 235 -FQIPPHAELRYEVHLKSFEKAKASWEMNSEEKLEQSNIVKERGTVYFKEGKYKQALLQY 293

Query: 342 NKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394
            K    +  + SF  +E + V +LR++  LN A C LKL+ +  AIE C+K +
Sbjct: 294 KKIVSWLEYESSFSGEEMQKVHALRLASHLNLAMCHLKLQAFSAAIESCNKAL 346

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). Plays a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly. The PPIase activity controls neuronal growth cones via regulation of TRPC1 channel opening.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9TRY0|FKBP4_BOVIN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Bos taurus GN=FKBP4 PE=1 SV=4

 Score =  174 bits (441), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 129/385 (33%), Positives = 195/385 (50%), Gaps = 47/385 (12%)

Query: 18  IDGEEEEPGEVIESAAPLKVGEERGLGNS-----GIKKKLLKNGVDWDTPEFGDEVTIHY 72
           +  EE +  E    +APL++    G+  S     G+ K + + G   +TP  GD V +HY
Sbjct: 1   MTAEETKAAESGAQSAPLRL---EGVDISPKQDEGVLKVIKREGTGTETPMIGDRVFVHY 57

Query: 73  VGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGV 132
            G LLDGTKFDS+ DR D  +F LG G+V    D  + TMK  E  V   T   E  +G+
Sbjct: 58  TGWLLDGTKFDSSLDRKDRFSFDLGKGEVIKAWDIAVATMKVGE--VCHITCKPEYAYGL 115

Query: 133 EGRD-SLPPNSVVQFEVELVSWITVVDLSK--DGGIVKKILEKGERDASPGDLDEVLVKY 189
            G    +PPN+ + FEVEL  +    DL++  DGGI+++I  +GE  A P +        
Sbjct: 116 AGSPPKIPPNATLVFEVELFEF-KGEDLTEEEDGGIIRRIRTRGEGYAKPNE-------- 166

Query: 190 QVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAG 249
                 G +V    E  +E Y KD  +  R     V E +  D             +  G
Sbjct: 167 ------GALV----EVALEGYFKDQVFDRRELRFEVGEGESMD-------------LPCG 203

Query: 250 LDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEM 309
           L++    M+K E +IV +   Y FG+  A ++   IP  A+L YE+ +  F K K  WEM
Sbjct: 204 LEKAIQRMEKGEHSIVYLKPRYAFGS--AGKEKFQIPPNAELKYEIHLKSFEKAKESWEM 261

Query: 310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSC 369
           +++ K+E +   KE G + FK GKY++A  +Y K    +  + SF D++ +  ++LR++ 
Sbjct: 262 SSEEKLEQSTIVKERGTVYFKEGKYKQAVLQYKKIVSWLEYESSFSDEDAEKAQALRLAS 321

Query: 370 WLNSAACCLKLKDYQGAIELCSKVI 394
            LN A C LKL+ +  AIE C+K +
Sbjct: 322 HLNLAMCHLKLQAFSAAIENCNKAL 346

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q02790|FKBP4_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3

 Score =  174 bits (440), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/353 (34%), Positives = 180/353 (50%), Gaps = 39/353 (11%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   + P  GD V +HY G LLDGTKFDS+ DR D  +F LG G+V   
Sbjct: 30  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKA 89

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWITVVDLSK-- 161
            D  I TMK  E  V   T   E  +G  G    +PPN+ + FEVEL  +    DL++  
Sbjct: 90  WDIAIATMKVGE--VCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF-KGEDLTEEE 146

Query: 162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE 221
           DGGI+++I  +GE  A P +              G +V    E  +E Y KD  +  R  
Sbjct: 147 DGGIIRRIQTRGEGYAKPNE--------------GAIV----EVALEGYYKDKLFDQREL 188

Query: 222 DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRD 281
              + E +  D             +  GL+R    M+K E +IV +   Y FG+V   ++
Sbjct: 189 RFEIGEGENLD-------------LPYGLERAIQRMEKGEHSIVYLKPSYAFGSV--GKE 233

Query: 282 LATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKY 341
              IP  A+L YE+ +  F K K  WEMN++ K+E +   KE G + FK GKY++A  +Y
Sbjct: 234 KFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQY 293

Query: 342 NKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394
            K    +  + SF ++E +  ++LR++  LN A C LKL+ +  AIE C+K +
Sbjct: 294 KKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 346

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening. Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9XSI2|FKBP5_SAGOE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Saguinus oedipus GN=FKBP5 PE=2 SV=2

 Score =  166 bits (419), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 117/351 (33%), Positives = 178/351 (50%), Gaps = 37/351 (10%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +TP  GD+V +HY G L +G KFDS+ DR +P  F +G GQV   
Sbjct: 30  DRGVLKIVKRVGHGEETPMIGDKVYVHYNGKLSNGKKFDSSHDRNEPFVFSIGKGQVIKA 89

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWITVVDLSKDG 163
            D G+ TMKK E  +       E  +G  G    +P N+ + FEVEL+++    DL +DG
Sbjct: 90  WDIGVSTMKKGE--ICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLNF-KGEDLLEDG 146

Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
           GI+++   +GE  ++P +   V +  +   G           G  F  +DV++       
Sbjct: 147 GIIRRTKRRGEGYSNPNEGARVQIHLEGRCG-----------GRVFDCRDVAF------- 188

Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
           TV E  G D + P+           G+D+    M++EE  I+ +   YGFG  EA +   
Sbjct: 189 TVGE--GEDHDIPI-----------GIDKALEKMQREEQCILHLGPRYGFG--EAGKPKF 233

Query: 284 TIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNK 343
            I   A+L YEV +  F K K  WEM+ + K+E A   KEEG + FK GKY +A  +Y K
Sbjct: 234 GIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEEGTVYFKGGKYVQAVIQYGK 293

Query: 344 AADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394
               +  +    + E K  +S  ++ +LN A C LKL++Y  A+E C K +
Sbjct: 294 IVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYAKAVECCDKAL 344

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP (By similarity). Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Saguinus oedipus (taxid: 9490)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q64378|FKBP5_MOUSE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Mus musculus GN=Fkbp5 PE=1 SV=1

 Score =  166 bits (419), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 114/351 (32%), Positives = 173/351 (49%), Gaps = 37/351 (10%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   + P FGD+V +HY G L DG KFDS+ DR  P  F LG GQV   
Sbjct: 30  DRGVLKIVKRVGTSDEAPMFGDKVYVHYKGMLSDGKKFDSSHDRKKPFAFSLGQGQVIKA 89

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWITVVDLSKDG 163
            D G+ TMKK E  +       E  +G  G    +P N+ + FE+EL+ +    DL +D 
Sbjct: 90  WDIGVSTMKKGE--ICHLLCKPEYAYGSAGHLQKIPSNATLFFEIELLDF-KGEDLFEDS 146

Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
           G++++I  KGE  ++P +   V V  +   G           G  F  +DV ++      
Sbjct: 147 GVIRRIKRKGEGYSNPNEGATVKVHLEGCCG-----------GRTFDCRDVVFVV----- 190

Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
                +G D + P+           G+D+    M++EE  I+ +   YGFG  EA +   
Sbjct: 191 ----GEGEDHDIPI-----------GIDKALVKMQREEQCILYLGPRYGFG--EAGKPKF 233

Query: 284 TIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNK 343
            I   A+L YEV +  F K K  WEM+ + K+  A   KE+G + FK GKY +A  +Y K
Sbjct: 234 GIDPNAELMYEVTLKSFEKAKESWEMDTKEKLTQAAIVKEKGTVYFKGGKYTQAVIQYRK 293

Query: 344 AADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394
               +  +    + E K  +S  ++ +LN A C LKL++Y  A+E C K +
Sbjct: 294 IVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYNKAVECCDKAL 344

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P27124|FKBP4_RABIT Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Oryctolagus cuniculus GN=FKBP4 PE=1 SV=3

 Score =  165 bits (417), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 122/354 (34%), Positives = 181/354 (51%), Gaps = 41/354 (11%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +TP  GD V +HY G LLDGTKFDS+ DR D  +F LG G+V   
Sbjct: 30  DEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKA 89

Query: 105 LDNGIITMKKRE-CAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWITVVDLS-- 160
            D  + TMK  E C +   T   E  +G  G    +PPN+ + FEVEL  +    DL+  
Sbjct: 90  WDIAVATMKVGELCRI---TCKPEYAYGSAGSPPKIPPNATLVFEVELFEF-KGEDLTDD 145

Query: 161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARL 220
           +DGGI+++I  +GE  A P D              G +V    E  +E Y KD  +  R 
Sbjct: 146 EDGGIIRRIRTRGEGYARPND--------------GAIV----EVALEGYYKDRLFDQRE 187

Query: 221 EDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKR 280
               V E +  D             +  GL++    M+K E +I+ +   Y FGN  A +
Sbjct: 188 LRFEVGEGESLD-------------LPCGLEKAIQRMEKGEHSILYLKPSYAFGN--AGK 232

Query: 281 DLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKK 340
           +   IP  A+L YEV +  F K K  WEM+++ K+E +   KE G + FK GKY++A  +
Sbjct: 233 EKFQIPPYAELKYEVHLKSFEKAKESWEMSSEEKLEQSAIVKERGTVYFKEGKYKQALLQ 292

Query: 341 YNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394
           Y K    +  + SF  +E +  ++LR++  LN A C LKL+ +  A+E C+K +
Sbjct: 293 YKKIVSWLEYESSFSSEEVQKAQALRLASHLNLAMCHLKLQAFSAAVESCNKAL 346

Immunophilin protein with PPIase and co-chaperone activities. Component of unligated steroid receptors heterocomplexes thought interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments. The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Oryctolagus cuniculus (taxid: 9986)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
255538020	598	peptidylprolyl isomerase, putative [Rici	0.791	0.533	0.514	3e-88
224067192	573	predicted protein [Populus trichocarpa]	0.791	0.556	0.511	1e-85
356552270	582	PREDICTED: 70 kDa peptidyl-prolyl isomer	0.791	0.548	0.485	2e-78
356564113	583	PREDICTED: 70 kDa peptidyl-prolyl isomer	0.791	0.547	0.474	4e-77
357437549	609	70 kDa peptidyl-prolyl isomerase [Medica	0.784	0.518	0.467	4e-77
225458880	600	PREDICTED: 70 kDa peptidyl-prolyl isomer	0.791	0.531	0.460	1e-76
297840663	584	hypothetical protein ARALYDRAFT_338459 [	0.789	0.544	0.474	2e-75
414869595	559	TPA: hypothetical protein ZEAMMB73_59337	0.789	0.568	0.427	2e-68
255589766	574	peptidylprolyl isomerase, putative [Rici	0.786	0.552	0.431	3e-68
226500876	553	LOC100283417 [Zea mays] gi|195634685|gb|	0.784	0.571	0.429	3e-68

>gi|255538020|ref|XP_002510075.1| peptidylprolyl isomerase, putative [Ricinus communis] gi|223550776|gb|EEF52262.1| peptidylprolyl isomerase, putative [Ricinus communis]

 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 183/356 (51%), Positives = 236/356 (66%), Gaps = 37/356 (10%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + GI K++++     + P   DEV + Y   L DGT    T +  + + F +  G +   
Sbjct: 153 DGGIVKRIIEKPEKIERPGDLDEVLVKYEVKLADGTIVAKTPE--EGIEFHVKDGHLCPA 210

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS------LPPNSVVQFEVELVSWITVVD 158
           L   ++TM+  E       +  +  FG EG+D+      +PPNSV+  ++EL+S+  VVD
Sbjct: 211 LPKAVMTMRGGEKV--KLIVHPQYAFGEEGKDANDGILPVPPNSVLNMDLELISFKPVVD 268

Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
           ++ D  + KKIL++GE                     GT VA       E  L  +SY A
Sbjct: 269 VTGDTKVFKKILKEGE---------------------GTNVAN------EGALVTISYTA 301

Query: 219 RLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278
           RL+DGT+FEK+G DGEQPL+F+TDEEQVIAGLDR AATMKK E A++TIN EYGFG+VE 
Sbjct: 302 RLQDGTIFEKRGLDGEQPLQFVTDEEQVIAGLDRAAATMKKGERAVLTINPEYGFGSVEV 361

Query: 279 KRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAG 338
           K+D ATIP  + L YE+EM+DFIKEK PWEMNN+ KIEAAGRKKEEGNLLFK+GK++RAG
Sbjct: 362 KQDHATIPPSSVLVYEIEMLDFIKEKTPWEMNNKEKIEAAGRKKEEGNLLFKSGKFQRAG 421

Query: 339 KKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394
           KKY+KAAD + E+ SF DDEQKL+KSLRVSCWLN AAC LKL D+QG I LCSKV+
Sbjct: 422 KKYDKAADYIVEEVSFDDDEQKLIKSLRVSCWLNGAACSLKLGDFQGTINLCSKVL 477

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067192|ref|XP_002302401.1| predicted protein [Populus trichocarpa] gi|222844127|gb|EEE81674.1| predicted protein [Populus trichocarpa]

 Score =  323 bits (827), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 182/356 (51%), Positives = 229/356 (64%), Gaps = 37/356 (10%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + GI KK+++ G   D P   DEV + Y   L DGT    T +  + + F +  G +   
Sbjct: 157 DGGIIKKIVEKGDKHDRPGDLDEVLVKYQVALADGTIVAKTLE--EGIEFYVKDGHLCPA 214

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS------LPPNSVVQFEVELVSWITVVD 158
           L    +TMK+ E       +  +  FG EG+D+      +PPNS +  ++EL S+  V+D
Sbjct: 215 LPKATMTMKRGEKV--KLVVQPQYAFGQEGKDASDAICPVPPNSTLYIDLELTSFKPVID 272

Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
           ++ D  + KKIL++GE                     G++VA    EG       +SY A
Sbjct: 273 VTGDAKVFKKILKEGE---------------------GSLVAN---EGATVT---ISYTA 305

Query: 219 RLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278
           RLEDGTVFE+KG D  QPL+FITDEEQVIAGLDR  ATMKK E+AI+T+  EYGFGNVE 
Sbjct: 306 RLEDGTVFERKGIDDGQPLQFITDEEQVIAGLDRAVATMKKGEYAILTVKPEYGFGNVET 365

Query: 279 KRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAG 338
           KRDLA +P  + L YEVEM DFIKEK PWEMNNQ KI+AA RKKEEGNLLFK+GKY RAG
Sbjct: 366 KRDLAIVPPSSILVYEVEMSDFIKEKTPWEMNNQEKIKAAERKKEEGNLLFKSGKYLRAG 425

Query: 339 KKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394
           KKY+KAA  V E+  F DDEQKLV ++RV+CWLN AAC LKL D+QGAI+LCSKV+
Sbjct: 426 KKYDKAASYVGEEEVFGDDEQKLVTAMRVTCWLNKAACSLKLNDFQGAIKLCSKVL 481

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552270|ref|XP_003544491.1| PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Glycine max]

 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 173/356 (48%), Positives = 222/356 (62%), Gaps = 37/356 (10%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ KK+++ G   + P   DEV + Y   L DGT    T +    + F +  G +   
Sbjct: 148 DGGVVKKIMEKGSGNERPGDLDEVLVKYQVVLDDGTVVVETPE--GGVEFHVKDGHLFPI 205

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRD------SLPPNSVVQFEVELVSWITVVD 158
           L   I+TM + E A     +  +  FG +GR+      S+PPNSV+   +ELVS+  V++
Sbjct: 206 LPKVIMTMTRGEKA--ELIVQPQYAFGEKGREAGSGLCSIPPNSVLHVNIELVSFKPVIN 263

Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
           ++ D  ++KKIL++GE                     G   A    EG       V + A
Sbjct: 264 VTGDSKVIKKILKEGE---------------------GVFTAN---EGANVT---VRFTA 296

Query: 219 RLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278
            LEDGTVFEK+G    QPLEFITDEEQVI GLDR  ATMKK E AIV+I+ +Y FGNVE 
Sbjct: 297 MLEDGTVFEKRGIGETQPLEFITDEEQVITGLDRAVATMKKGERAIVSIHPDYAFGNVEV 356

Query: 279 KRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAG 338
           +RDLA +P  A + Y+VEMMDFIKEK PWE+N++ KIE AGR KEEGN+LFK G Y+RAG
Sbjct: 357 RRDLAIVPPGATVVYDVEMMDFIKEKAPWELNSKEKIEVAGRMKEEGNVLFKGGNYQRAG 416

Query: 339 KKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394
           KKY KAAD V EDGSF DDEQK  ++LRVSCWLN AAC LKL D+ GAI+LCS+V+
Sbjct: 417 KKYEKAADFVEEDGSFGDDEQKQAQTLRVSCWLNGAACSLKLNDFPGAIKLCSQVL 472

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564113|ref|XP_003550301.1| PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Glycine max]

 Score =  294 bits (753), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 169/356 (47%), Positives = 222/356 (62%), Gaps = 37/356 (10%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ KK+L+ G   + P   DEV + Y   L DGT    T +    + F +  G +   
Sbjct: 149 DGGVVKKILEKGSGIERPGDLDEVLVKYRVVLGDGTVVVETLE--GGVEFHMKDGHLFPI 206

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRD------SLPPNSVVQFEVELVSWITVVD 158
           L   I+TM + E A     L  +  FG +GR+      S+PPNSV+   +ELVS+  V++
Sbjct: 207 LPKVIMTMTRGEKA--ELILQPQYAFGEKGREAGSGLCSIPPNSVLHVNIELVSFKPVIN 264

Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
           ++ D  ++KKIL++GE                         A T  EG       VS+ A
Sbjct: 265 VTGDSKVIKKILKEGEG------------------------AFTANEGANVT---VSFTA 297

Query: 219 RLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278
            LEDGTVFEK+G     PLEFITDEEQVI GLDR  ATMKK E AI++I+ +Y FG+VE 
Sbjct: 298 MLEDGTVFEKRGIGETLPLEFITDEEQVITGLDRAVATMKKGERAIISIHPDYAFGDVEV 357

Query: 279 KRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAG 338
           +RD+A +P  + + Y++EMMDFIKEK PWE+N++ KIE AGR KEEGN+LFK G Y+RAG
Sbjct: 358 RRDIAIVPPGSNVVYDIEMMDFIKEKAPWELNSKEKIEVAGRMKEEGNVLFKVGNYQRAG 417

Query: 339 KKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394
           KKY KAAD V EDGSF  DEQK  ++L+VSCWLNSAAC LKL D+ GAI+LCS+V+
Sbjct: 418 KKYEKAADFVDEDGSFGFDEQKQAQTLKVSCWLNSAACSLKLNDFPGAIKLCSQVL 473

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357437549|ref|XP_003589050.1| 70 kDa peptidyl-prolyl isomerase [Medicago truncatula] gi|355478098|gb|AES59301.1| 70 kDa peptidyl-prolyl isomerase [Medicago truncatula]

 Score =  294 bits (753), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 165/353 (46%), Positives = 222/353 (62%), Gaps = 37/353 (10%)

Query: 48  IKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDN 107
           I KK+++ G   D P   DEV + Y   L  GT    T +    + F +  G +   L  
Sbjct: 151 IIKKIMEKGKGNDRPGDLDEVLVKYQVALEAGTVVAETPE--GGVEFYVNDGHLLPRLPK 208

Query: 108 GIITMKKRECAVFTFTLPSELRFGVEGRD------SLPPNSVVQFEVELVSWITVVDLSK 161
            I+TM + E A     +  +  FG +GR+      S+PP+S++   +ELVS+  V++++ 
Sbjct: 209 VIMTMTRGEKA--ELIVQPQYAFGEKGREAGSGFRSIPPDSMLYINIELVSFKPVINVTG 266

Query: 162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE 221
           D  ++KKI ++GE   +  +   V V+Y  M                           LE
Sbjct: 267 DFTVIKKIFKEGEGAFTANEGANVTVRYTAM---------------------------LE 299

Query: 222 DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRD 281
           DGTVFEK+G D  QPL+F+TDEEQVI GLDR  ATMKK E AI++I+ +Y FGNVE K+D
Sbjct: 300 DGTVFEKRGIDETQPLKFVTDEEQVITGLDRAVATMKKGERAIISIHPDYAFGNVEVKQD 359

Query: 282 LATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKY 341
           LA +P  +K+ Y++EM+DFIKEK PWE+N+  KI+ A RKKEEGNLLFK+GKY+RA KKY
Sbjct: 360 LAIVPPGSKVVYDIEMVDFIKEKAPWELNSNEKIKVAERKKEEGNLLFKSGKYQRAAKKY 419

Query: 342 NKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394
           +KAAD VS DGS  DDE+KL KSLRVSCWLN AACCLKL D+ GAI+LC++V+
Sbjct: 420 DKAADFVSRDGSLGDDEEKLAKSLRVSCWLNGAACCLKLNDFPGAIKLCTQVL 472

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458880|ref|XP_002283423.1| PREDICTED: 70 kDa peptidyl-prolyl isomerase [Vitis vinifera] gi|302142176|emb|CBI19379.3| unnamed protein product [Vitis vinifera]

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 164/356 (46%), Positives = 225/356 (63%), Gaps = 37/356 (10%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + GI KK+L+ G     P   DE+ + Y   L+D T    T +  + + F +  GQ  + 
Sbjct: 158 DGGIIKKILEKGNRNVQPGDLDELLVKYKVKLVDDTIVAQTPE--EGIEFYMKDGQFCSA 215

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS------LPPNSVVQFEVELVSWITVVD 158
           +   I TMK  E       +  +  FG  GRD+      +PP+SV+  ++ELVS+  V+D
Sbjct: 216 MPKAIKTMKSGEKV--KLIVQPQYAFGDVGRDAENEFPLIPPSSVLIIDLELVSFKPVID 273

Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
           ++ D  + KKIL +G                 +   +G  V              V Y A
Sbjct: 274 VTGDSKVFKKILVEGAN--------------TIAANEGATVT-------------VRYTA 306

Query: 219 RLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278
           +LEDGT+FEKKG+DGE PL+FITDEEQVI+GLD+  ATM K E +IVTI+ EYG+G++E 
Sbjct: 307 KLEDGTIFEKKGFDGENPLQFITDEEQVISGLDQAVATMTKGERSIVTIHPEYGYGSIEV 366

Query: 279 KRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAG 338
            +D++ +P  + + YEVEM+DF+KEK PWEM++Q KIE AGRKKEEGNLLFK+GKY+RA 
Sbjct: 367 MQDISIVPPSSIIIYEVEMLDFVKEKAPWEMSDQEKIETAGRKKEEGNLLFKSGKYQRAR 426

Query: 339 KKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394
           KKY+KAAD VSE G F D + K+V++L+VSCWLN AACCLKL ++ GAI+LCSKV+
Sbjct: 427 KKYDKAADYVSECGIFGDGDHKVVETLQVSCWLNGAACCLKLNNFPGAIKLCSKVL 482

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297840663|ref|XP_002888213.1| hypothetical protein ARALYDRAFT_338459 [Arabidopsis lyrata subsp. lyrata] gi|297334054|gb|EFH64472.1| hypothetical protein ARALYDRAFT_338459 [Arabidopsis lyrata subsp. lyrata]

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 169/356 (47%), Positives = 220/356 (61%), Gaps = 38/356 (10%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + GI KK+++ G     P   DEV + Y   LLD T    + D+   + F +  G +   
Sbjct: 162 DGGIIKKIIEKGDKNGKPSDLDEVLVKYQVELLDSTIVAKSPDQ--GIQFCVNDGHLCPA 219

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS------LPPNSVVQFEVELVSWITVVD 158
           L   I++M   E       +  +  FG EGR S      +PPNSV+  +V LVS+  V+D
Sbjct: 220 LPLAIVSMHPGEKV--KLIVQPQYGFGEEGRSSSGIINAVPPNSVLNIDVLLVSYKPVID 277

Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
           +  D  + KKIL  GE  +S  D             DG  V              VSY+A
Sbjct: 278 VVGDSKVFKKILRDGE-GSSVAD-------------DGATVT-------------VSYVA 310

Query: 219 RLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278
           +LEDGT+FE+K    E+PL F+TDEEQVI GLD+ AATMKK E A++ I+ EYGFGNVE 
Sbjct: 311 KLEDGTIFERKEVGEEEPLVFVTDEEQVITGLDKAAATMKKGEKAVLKISPEYGFGNVEV 370

Query: 279 KRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAG 338
           +RDLA +P C+ L YEVEM+DF+KEK P EMNN+ KIEAA RKKEEGNLL+KN KY+RA 
Sbjct: 371 QRDLAKVPQCSTLIYEVEMLDFVKEKTPREMNNEEKIEAANRKKEEGNLLYKNQKYQRAA 430

Query: 339 KKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394
           KKYNKAAD + E G F  DE+K +K+LRVSC+LN+AAC LKLK+++  I LCS+V+
Sbjct: 431 KKYNKAADFI-ETGKFEGDEEKQLKALRVSCFLNAAACSLKLKNFRETIILCSEVL 485

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414869595|tpg|DAA48152.1| TPA: hypothetical protein ZEAMMB73_593378 [Zea mays]

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 154/360 (42%), Positives = 217/360 (60%), Gaps = 42/360 (11%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + GI KK+LK G  W+ P+  DEV + Y   L DGT       + + + F +  G     
Sbjct: 158 DGGIFKKILKEGEKWENPKDPDEVLVKYEARLEDGT----VVSKSEGVEFTVKDGYFCPA 213

Query: 105 LDNGIITMKKRECAVFTFT----LPSELRFGVEGRDS------LPPNSVVQFEVELVSWI 154
           L   + TMKK E  + T      +P +  FG +GR +      +PPN+ +  ++EL+SW 
Sbjct: 214 LAKAVKTMKKAEKVLLTVKPQCEIPFQNGFGEKGRPAAGEEGAVPPNASLLIDLELISWK 273

Query: 155 TVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDV 214
           TV ++  D  I+KK+L++GE    P +              G +V             +V
Sbjct: 274 TVTEIGDDKKILKKVLKEGEGYERPNE--------------GAVV-------------EV 306

Query: 215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFG 274
             I +L+DG VF KKG+D E+P +F TDEE+VIAGLDR    MKK E A+VTI  EY FG
Sbjct: 307 KIIGKLQDGAVFTKKGHD-EEPFKFKTDEEEVIAGLDRAVLNMKKGEVALVTIPPEYAFG 365

Query: 275 NVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKY 334
           + E+K+DLA +P  + + YEVE++ F+K+K  W++NN+ KIEAAG+KKEEGN LFK+GKY
Sbjct: 366 STESKQDLAVVPPNSTVIYEVELISFVKDKESWDLNNEEKIEAAGKKKEEGNALFKSGKY 425

Query: 335 ERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394
            RA K+Y KAA  +  D SF +DE+K  K L++SC LN+AAC LKLKDY+ A +LC+KV+
Sbjct: 426 ARASKRYEKAAKYIEYDTSFSEDEKKQSKQLKISCNLNNAACKLKLKDYKEAAKLCTKVL 485

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255589766|ref|XP_002535081.1| peptidylprolyl isomerase, putative [Ricinus communis] gi|223524081|gb|EEF27302.1| peptidylprolyl isomerase, putative [Ricinus communis]

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 154/357 (43%), Positives = 217/357 (60%), Gaps = 40/357 (11%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + GI KK+L  G  W+ P+  DEV +++   L DGT       + D + F +  G     
Sbjct: 154 DGGIFKKILVEGEKWENPKDLDEVLVNFEAQLEDGT----VVAKSDGVEFAVKEGHFCPA 209

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS------LPPNSVVQFEVELVSWITVVD 158
           L   + TMKK+E  + T  +  +  FG +G+ +      +PPN+ +Q  +ELVSW TV +
Sbjct: 210 LAKAVKTMKKKEKVLLT--VKPQYGFGEKGKPASNGEGAVPPNATLQITLELVSWKTVSE 267

Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
           ++ D  ++KKIL++GE    P D              G++V              +  I 
Sbjct: 268 VTDDKKVMKKILKEGEGYERPND--------------GSLVK-------------LKLIG 300

Query: 219 RLEDGTVFEKKGYDGEQPL-EFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE 277
           +L+DGTVF KKG+D E+ L EF TDEEQVI GLDR    MKK E A+VTI  EY FG  E
Sbjct: 301 KLQDGTVFLKKGHDNEEELFEFTTDEEQVIEGLDRAVLAMKKGEVALVTIAPEYAFGASE 360

Query: 278 AKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERA 337
           +K++LA IP  + +YYEVE++ F+KEK  W+MN Q KIEAAG+KKEEGN+LFK GKY RA
Sbjct: 361 SKQELAVIPPNSTVYYEVELVSFVKEKESWDMNTQEKIEAAGKKKEEGNILFKAGKYARA 420

Query: 338 GKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394
            K+Y KA   +  D SF ++E+K  K+L+V+C LN+AAC L+LK+Y+ A +LC+KV+
Sbjct: 421 SKRYEKAVKHIEYDSSFSEEEKKQAKALKVACNLNNAACKLRLKEYKEAEKLCTKVL 477

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226500876|ref|NP_001149790.1| LOC100283417 [Zea mays] gi|195634685|gb|ACG36811.1| peptidyl-prolyl isomerase [Zea mays] gi|414869593|tpg|DAA48150.1| TPA: peptidyl-prolyl isomerase [Zea mays] gi|414869594|tpg|DAA48151.1| TPA: peptidyl-prolyl isomerase [Zea mays]

 Score =  265 bits (677), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 153/356 (42%), Positives = 216/356 (60%), Gaps = 40/356 (11%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + GI KK+LK G  W+ P+  DEV + Y   L DGT       + + + F +  G     
Sbjct: 158 DGGIFKKILKEGEKWENPKDPDEVLVKYEARLEDGT----VVSKSEGVEFTVKDGYFCPA 213

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS------LPPNSVVQFEVELVSWITVVD 158
           L   + TMKK E  + T  +  +  FG +GR +      +PPN+ +  ++EL+SW TV +
Sbjct: 214 LAKAVKTMKKAEKVLLT--VKPQYGFGEKGRPAAGEEGAVPPNASLLIDLELISWKTVTE 271

Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
           +  D  I+KK+L++GE    P +              G +V             +V  I 
Sbjct: 272 IGDDKKILKKVLKEGEGYERPNE--------------GAVV-------------EVKIIG 304

Query: 219 RLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278
           +L+DG VF KKG+D E+P +F TDEE+VIAGLDR    MKK E A+VTI  EY FG+ E+
Sbjct: 305 KLQDGAVFTKKGHD-EEPFKFKTDEEEVIAGLDRAVLNMKKGEVALVTIPPEYAFGSTES 363

Query: 279 KRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAG 338
           K+DLA +P  + + YEVE++ F+K+K  W++NN+ KIEAAG+KKEEGN LFK+GKY RA 
Sbjct: 364 KQDLAVVPPNSTVIYEVELISFVKDKESWDLNNEEKIEAAGKKKEEGNALFKSGKYARAS 423

Query: 339 KKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394
           K+Y KAA  +  D SF +DE+K  K L++SC LN+AAC LKLKDY+ A +LC+KV+
Sbjct: 424 KRYEKAAKYIEYDTSFSEDEKKQSKQLKISCNLNNAACKLKLKDYKEAAKLCTKVL 479

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
UNIPROTKB|Q6K5Q1	682	P0579G08.8 "Putative peptidylp	0.481	0.284	0.517	1.4e-99
UNIPROTKB|Q9XFE4	585	OSJNBa0091C07.4 "OSJNBa0091C07	0.516	0.355	0.504	1.9e-51
UNIPROTKB|Q7F1F2	580	OJ1191_A10.119 "cDNA clone:J03	0.516	0.358	0.506	8.3e-51
TAIR|locus:2152561	578	ROF2 "AT5G48570" [Arabidopsis	0.486	0.339	0.522	1.8e-48
TAIR|locus:2090265	562	ROF1 "AT3G25230" [Arabidopsis	0.481	0.345	0.54	4.7e-48
UNIPROTKB|A8J0I6	569	FKB62 "Peptidyl-prolyl cis-tra	0.471	0.333	0.376	4.7e-47
UNIPROTKB|F1NIM4	442	FKBP4 "Uncharacterized protein	0.486	0.443	0.333	3.2e-46
UNIPROTKB|F1NP08	464	FKBP4 "Uncharacterized protein	0.486	0.422	0.333	5.5e-46
ZFIN|ZDB-GENE-030131-514	450	fkbp4 "FK506 binding protein 4	0.332	0.297	0.4	1.3e-42
UNIPROTKB|P27124	458	FKBP4 "Peptidyl-prolyl cis-tra	0.434	0.382	0.342	2.2e-42

UNIPROTKB|Q6K5Q1 P0579G08.8 "Putative peptidylprolyl isomerase" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 511 (184.9 bits), Expect = 1.4e-99, Sum P(2) = 1.4e-99
 Identities = 103/199 (51%), Positives = 138/199 (69%)

Query:    32 AAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDP 91
             AA ++VGEE+ +G  G++KKL+K G  W+ P+ GDEV +HY GTLLDGTKFDS+RDR  P
Sbjct:    80 AAEMEVGEEKEIGKEGLRKKLVKEGEGWERPDAGDEVQVHYTGTLLDGTKFDSSRDRDAP 139

Query:    92 LTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVEL 150
               F LG GQV  G D GI TMKK E A+FT  +P EL +G +G    +PPN+ +QF+VEL
Sbjct:   140 FKFTLGQGQVIKGWDLGIKTMKKGENAIFT--IPPELAYGEDGSPPVIPPNATLQFDVEL 197

Query:   151 VSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFY 210
             +SW +V D+ KDGGI+KK+L +G +  +P D DEV VKY+V L DGT+VA++  +GVEF 
Sbjct:   198 ISWESVKDICKDGGILKKVLAEGTKWENPRDRDEVFVKYEVRLEDGTVVAES--DGVEFT 255

Query:   211 LKDVSYIARLEDGTVFEKK 229
             +KD  +   +       KK
Sbjct:   256 VKDGHFCPAISKAVKTMKK 274

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q9XFE4 OSJNBa0091C07.4 "OSJNBa0091C07.4 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 109/216 (50%), Positives = 153/216 (70%)

Query:   180 GDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEF 239
             GD D+ ++K  +  G+G    + P +G    +  V +I +LEDGTVF KKG+DG++P EF
Sbjct:   279 GD-DKRILKKVLKEGEGY---ERPNDGA---VVRVRFIGKLEDGTVFSKKGHDGDEPFEF 331

Query:   240 ITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMD 299
              TDEEQVI GLDR   TMKK E A+V +  ++ FG+ E K+DLA +P+ + ++YEVE++ 
Sbjct:   332 RTDEEQVIEGLDRTVVTMKKGEVALVRLPPQHAFGSTETKQDLAVVPANSTVWYEVELVS 391

Query:   300 FIKEKVPWEM-NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDE 358
             F KEK  W++ +N  KIEAA +KK+EGN+ FK GKY +A K+Y KAA  +  D SF DDE
Sbjct:   392 FEKEKESWDLKDNAEKIEAAAKKKDEGNVWFKMGKYAKASKRYEKAAKYIEYDSSFTDDE 451

Query:   359 QKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394
             +K  K+L+VSC LN+AAC LKLK+Y+ A +LC+KV+
Sbjct:   452 KKQSKALKVSCKLNNAACKLKLKEYREAEKLCTKVL 487

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q7F1F2 OJ1191_A10.119 "cDNA clone:J033121G16, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 109/215 (50%), Positives = 146/215 (67%)

Query:   180 GDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEF 239
             GD  ++L K   +L +GT   + P EG    +  V    +L+DGT+F KKG+D  +P EF
Sbjct:   275 GDDKKILKK---VLTEGTGYER-PNEGA---VVKVKITGKLQDGTIFTKKGHDEPEPFEF 327

Query:   240 ITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMD 299
              TDEE+VI G+DR    MK  E A+VTI  EY FG+ E+K+DLA +P  + + YEVE++ 
Sbjct:   328 KTDEEEVIDGIDRAVLNMKNGEVALVTIPPEYAFGSTESKQDLAVVPPNSTVIYEVELVS 387

Query:   300 FIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQ 359
             F+K+K  W++NN  KIE AG KKEEGN LFK GKY RA K+Y KAA  +  D SF +DE+
Sbjct:   388 FVKDKESWDLNNTEKIETAGAKKEEGNALFKLGKYVRASKRYEKAAKFIEYDSSFSEDEK 447

Query:   360 KLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394
             K  K L+V+C LN+AAC LKLKDY+ A +LC+KV+
Sbjct:   448 KQSKQLKVTCNLNNAACKLKLKDYKQAEKLCTKVL 482

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

TAIR|locus:2152561 ROF2 "AT5G48570" [Arabidopsis thaliana (taxid:3702)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 105/201 (52%), Positives = 135/201 (67%)

Query:    31 SAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYD 90
             SA  LK+GEE  +G SG+KKKL+K    WDTPE GDEV +HY GTLLDGTKFDS+RDR  
Sbjct:    31 SAPYLKIGEEMEIGKSGLKKKLVKECEKWDTPENGDEVEVHYTGTLLDGTKFDSSRDRGT 90

Query:    91 PLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVE 149
             P  F LG G V  G D GI TMKK E A+FT  +P EL +G  G   ++PPN+ +QF+VE
Sbjct:    91 PFKFTLGQGHVIKGWDLGIKTMKKGENAIFT--IPPELAYGETGSPPTIPPNATLQFDVE 148

Query:   150 LVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEF 209
             L++W +V D+  DGG+ KKI+ +GE+   P DLDEV VKY+  L DGT+V K+  +GVEF
Sbjct:   149 LIAWRSVKDICGDGGVSKKIIVEGEKWEKPKDLDEVYVKYEARLEDGTIVGKS--DGVEF 206

Query:   210 YLKDVSYIARLEDGTVFEKKG 230
              +K+  +   L       K+G
Sbjct:   207 TVKEGHFCPALSKAVKTMKRG 227

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;RCA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2090265 ROF1 "AT3G25230" [Arabidopsis thaliana (taxid:3702)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 108/200 (54%), Positives = 137/200 (68%)

Query:    32 AAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDP 91
             A+ LKVGEE+ +   G+KKKLLK G  ++TPE GDEV +HY GTLLDGTKFDS+RDR  P
Sbjct:    25 ASFLKVGEEKEI-QQGLKKKLLKEGEGYETPENGDEVEVHYTGTLLDGTKFDSSRDRATP 83

Query:    92 LTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVEL 150
               F LG GQV  G D GI TMKK E AVFT  +P+EL +G  G   ++P N+ +QF+VEL
Sbjct:    84 FKFTLGQGQVIKGWDIGIKTMKKGENAVFT--IPAELAYGESGSPPTIPANATLQFDVEL 141

Query:   151 VSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFY 210
             + W +V D+ KDGG+ KKIL  GE+  +P DLDEVLVK++  L DGT+V K+  +GVEF 
Sbjct:   142 LKWDSVKDICKDGGVFKKILAVGEKWENPKDLDEVLVKFEAKLEDGTVVGKS--DGVEFT 199

Query:   211 LKDVSYIARLEDGTVFEKKG 230
             +KD  +   L       KKG
Sbjct:   200 VKDGHFCPALTKAVKTMKKG 219

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0009408 "response to heat" evidence=RCA;IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IDA

GO:0071944 "cell periphery" evidence=IDA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

UNIPROTKB|A8J0I6 FKB62 "Peptidyl-prolyl cis-trans isomerase, FKBP-type" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 331 (121.6 bits), Expect = 4.7e-47, Sum P(2) = 4.7e-47
 Identities = 75/199 (37%), Positives = 117/199 (58%)

Query:   201 KTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKE 260
             + P EG    L+    +  L DG VF K G +G + L F+T+EEQV  GL+     MKK 
Sbjct:   260 RRPNEGASVTLRVTGKV--LPDGPVFMKHG-EGSE-LRFVTEEEQVPEGLELAVMKMKKG 315

Query:   261 EWAIVTINHE-YGFGN----VEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKI 315
             E A+VT+N   YG+G+    V  +     +P+ ++L +EV+++DF   K  WEM++  K 
Sbjct:   316 ETAVVTVNDPAYGYGDKPRTVSVEGSEVEVPAGSRLQFEVDLVDFTNAKETWEMSDIEKA 375

Query:   316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAA 375
              AA ++K++GN  FK+GK  RA   +++A   VS D SF D+ + + K ++ SCWLN AA
Sbjct:   376 HAAKQRKDKGNAFFKSGKLARAQSCWDRAVAAVSYDKSFPDEAKAIGKEVKRSCWLNLAA 435

Query:   376 CCLKLKDYQGAIELCSKVI 394
               LK   ++ A++ C+ V+
Sbjct:   436 LDLKRAHWKDAVKHCTSVL 454

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|F1NIM4 FKBP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 276 (102.2 bits), Expect = 3.2e-46, Sum P(2) = 3.2e-46
 Identities = 68/204 (33%), Positives = 108/204 (52%)

Query:   195 DGTMVAKTPEEGVEFYLK-DVSYIARLEDGTVFEKKGYDGEQPLEFIT---DEEQVIAGL 250
             DG ++ +  ++G E YLK +   +  ++    +  + +D ++ L F     D   +  GL
Sbjct:   140 DGGIIRRIRKKG-EGYLKPNEGALVEIQFEGRYRDRAFD-KRELRFEIGEGDNYDLPHGL 197

Query:   251 DRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMN 310
             ++    M+K E +I  +   YGFG+   ++    IP  A+L YEV++  F K K  WEMN
Sbjct:   198 EKAIQKMEKSEESIFYLKPNYGFGSTGKEK--FQIPPDAELQYEVKLKSFEKAKESWEMN 255

Query:   311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCW 370
              + K+E +   KE G   FK GKY+RA  +Y K    +  +    D+E    KSLR++  
Sbjct:   256 TEEKLEQSCMVKERGTQYFKEGKYKRAALQYKKIVLWLEHESGLSDEEDTKAKSLRLAAH 315

Query:   371 LNSAACCLKLKDYQGAIELCSKVI 394
             LN A C LKLK+Y  A+E C+K +
Sbjct:   316 LNLAMCHLKLKEYSQALENCNKAL 339

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F1NP08 FKBP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 276 (102.2 bits), Expect = 5.5e-46, Sum P(2) = 5.5e-46
 Identities = 68/204 (33%), Positives = 108/204 (52%)

Query:   195 DGTMVAKTPEEGVEFYLK-DVSYIARLEDGTVFEKKGYDGEQPLEFIT---DEEQVIAGL 250
             DG ++ +  ++G E YLK +   +  ++    +  + +D ++ L F     D   +  GL
Sbjct:   140 DGGIIRRIRKKG-EGYLKPNEGALVEIQFEGRYRDRAFD-KRELRFEIGEGDNYDLPHGL 197

Query:   251 DRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMN 310
             ++    M+K E +I  +   YGFG+   ++    IP  A+L YEV++  F K K  WEMN
Sbjct:   198 EKAIQKMEKSEESIFYLKPNYGFGSTGKEK--FQIPPDAELQYEVKLKSFEKAKESWEMN 255

Query:   311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCW 370
              + K+E +   KE G   FK GKY+RA  +Y K    +  +    D+E    KSLR++  
Sbjct:   256 TEEKLEQSCMVKERGTQYFKEGKYKRAALQYKKIVLWLEHESGLSDEEDTKAKSLRLAAH 315

Query:   371 LNSAACCLKLKDYQGAIELCSKVI 394
             LN A C LKLK+Y  A+E C+K +
Sbjct:   316 LNLAMCHLKLKEYSQALENCNKAL 339

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006463 "steroid hormone receptor complex assembly" evidence=IEA

GO:0007566 "embryo implantation" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0030850 "prostate gland development" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0031503 "protein complex localization" evidence=IEA

GO:0035259 "glucocorticoid receptor binding" evidence=IEA

GO:0046661 "male sex differentiation" evidence=IEA

GO:0051219 "phosphoprotein binding" evidence=IEA

ZFIN|ZDB-GENE-030131-514 fkbp4 "FK506 binding protein 4" [Danio rerio (taxid:7955)]

 Score = 256 (95.2 bits), Expect = 1.3e-42, Sum P(2) = 1.3e-42
 Identities = 56/140 (40%), Positives = 82/140 (58%)

Query:    45 NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
             + G+ K + K G   + P  GD+V +HYVGTLLDG++FDS+RDR +  +F+LG GQV   
Sbjct:    25 DGGVLKLVKKEGTGTELPMIGDKVFVHYVGTLLDGSQFDSSRDRGEKFSFELGKGQVIKA 84

Query:   105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI--TVVDLSK 161
              D G+ TMK  E  +   T   E  +G  G    +PPN+ + F+VEL  +    + D  +
Sbjct:    85 WDIGVATMKIGE--ICRLTCKPEYAYGAAGSPPKIPPNATLLFQVELFDFRGEDITD-DE 141

Query:   162 DGGIVKKILEKGERDASPGD 181
             DGGI ++I+ KGE    P +
Sbjct:   142 DGGITRRIITKGEGYTKPNE 161

GO:0006457 "protein folding" evidence=IEA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0016020 "membrane" evidence=IBA

GO:0005528 "FK506 binding" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IBA

UNIPROTKB|P27124 FKBP4 "Peptidyl-prolyl cis-trans isomerase FKBP4" [Oryctolagus cuniculus (taxid:9986)]

 Score = 257 (95.5 bits), Expect = 2.2e-42, Sum P(2) = 2.2e-42
 Identities = 64/187 (34%), Positives = 102/187 (54%)

Query:   218 ARLEDGTVFEK--KGY--D---GEQPLEFITDEEQVI---AGLDRVAATMKKEEWAIVTI 267
             AR  DG + E   +GY  D    ++ L F   E + +    GL++    M+K E +I+ +
Sbjct:   162 ARPNDGAIVEVALEGYYKDRLFDQRELRFEVGEGESLDLPCGLEKAIQRMEKGEHSILYL 221

Query:   268 NHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNL 327
                Y FGN  A ++   IP  A+L YEV +  F K K  WEM+++ K+E +   KE G +
Sbjct:   222 KPSYAFGN--AGKEKFQIPPYAELKYEVHLKSFEKAKESWEMSSEEKLEQSAIVKERGTV 279

Query:   328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAI 387
              FK GKY++A  +Y K    +  + SF  +E +  ++LR++  LN A C LKL+ +  A+
Sbjct:   280 YFKEGKYKQALLQYKKIVSWLEYESSFSSEEVQKAQALRLASHLNLAMCHLKLQAFSAAV 339

Query:   388 ELCSKVI 394
             E C+K +
Sbjct:   340 ESCNKAL 346

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=ISS

GO:0010977 "negative regulation of neuron projection development" evidence=IDA

GO:0031111 "negative regulation of microtubule polymerization or depolymerization" evidence=IDA

GO:0044295 "axonal growth cone" evidence=ISS

GO:0048156 "tau protein binding" evidence=IPI

GO:0061077 "chaperone-mediated protein folding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.766
4th Layer	5.2.1.8	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.II.4140.1 hypothetical protein (538 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	403
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	7e-26
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	1e-20
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	2e-13
PRK10902	269	PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-	5e-10
COG1047	174	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans	6e-09
PRK11570	206	PRK11570, PRK11570, peptidyl-prolyl cis-trans isom	8e-08
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	4e-07
TIGR03516	177	TIGR03516, ppisom_GldI, peptidyl-prolyl isomerase,	5e-07
PRK15095	156	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-	6e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	8e-06
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-05
COG1047	174	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans	3e-04

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 99.6 bits (249), Expect = 7e-26
 Identities = 44/95 (46%), Positives = 58/95 (61%), Gaps = 4/95 (4%)

Query: 59  WDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECA 118
            +  + GD VT+HY G L DGT FDS++DR  P  F LG+GQV  G D G++ MK  E  
Sbjct: 2   PEKAKKGDTVTVHYTGKLEDGTVFDSSKDRGKPFEFTLGSGQVIPGWDEGLLGMKVGE-- 59

Query: 119 VFTFTLPSELRFGVEGR--DSLPPNSVVQFEVELV 151
               T+P EL +G EG     +PPN+ + FEVEL+
Sbjct: 60  KRKLTIPPELAYGEEGLAGGVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 89.0 bits (221), Expect = 1e-20
 Identities = 50/108 (46%), Positives = 63/108 (58%), Gaps = 6/108 (5%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG++ K+LK G D   P+ GD VT+HY GTL+DGT FDS+ DR  P  F L  G V  G 
Sbjct: 101 SGLQYKVLKAG-DGAAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPL--GGVIPGW 157

Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVS 152
           D G+  MK         T+P EL +G  G    +PPNS + FEVEL+ 
Sbjct: 158 DEGLQGMKVGG--KRKLTIPPELAYGERGVPGVIPPNSTLVFEVELLD 203

Length = 205

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 65.7 bits (161), Expect = 2e-13
 Identities = 32/84 (38%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGF 273
           V Y  +LEDGTVF+    D  +P EF     QVI G D     MK  E   +TI  E  +
Sbjct: 13  VHYTGKLEDGTVFDS-SKDRGKPFEFTLGSGQVIPGWDEGLLGMKVGEKRKLTIPPELAY 71

Query: 274 GNVEAKRDLATIPSCAKLYYEVEM 297
           G          IP  A L +EVE+
Sbjct: 72  GEEGLAGG--VIPPNATLVFEVEL 93

Length = 94

>gnl|CDD|236791 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 59.4 bits (144), Expect = 5e-10
 Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 5/107 (4%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           +G+  K+ K G   + P+  D V ++Y GTL+DG +FD++  R +PL+F+L    V  G 
Sbjct: 146 TGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--VIPGW 202

Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVS 152
             G+  +KK         +P EL +G  G   +P NS + F+VEL+ 
Sbjct: 203 TEGLKNIKKG--GKIKLVIPPELAYGKAGVPGIPANSTLVFDVELLD 247

Length = 269

>gnl|CDD|223976 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

 Score = 54.6 bits (132), Expect = 6e-09
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 2/68 (2%)

Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
           GD V++HY   + DG   D+T + Y PLTF +G GQ+  GL+  ++  +  E   FT  +
Sbjct: 6   GDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGE--EFTVEI 63

Query: 125 PSELRFGV 132
           P E  FG 
Sbjct: 64  PPEDAFGE 71

Length = 174

>gnl|CDD|183207 PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 52.1 bits (125), Expect = 8e-08
 Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 12/110 (10%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG++ ++L  G +   P   D V +HY G L+DGT FDS+  R +P  F +    V  G 
Sbjct: 102 SGLQFRVLTQG-EGAIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVNG--VIPGW 158

Query: 106 DNGIITM---KKRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELV 151
              +  M    K E      T+P EL +G  G   S+PP S + FEVEL+
Sbjct: 159 IEALTLMPVGSKWE-----LTIPHELAYGERGAGASIPPFSTLVFEVELL 203

Length = 206

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 37/115 (32%), Positives = 49/115 (42%), Gaps = 14/115 (12%)

Query: 187 VKYQVM-LGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQ 245
           ++Y+V+  GDG    K     V        Y   L DGTVF+   YD  QP EF      
Sbjct: 103 LQYKVLKAGDGAAPKKGDTVTVH-------YTGTLIDGTVFD-SSYDRGQPAEFPLG--G 152

Query: 246 VIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF 300
           VI G D     MK      +TI  E  +G    +     IP  + L +EVE++D 
Sbjct: 153 VIPGWDEGLQGMKVGGKRKLTIPPELAYG---ERGVPGVIPPNSTLVFEVELLDV 204

Length = 205

>gnl|CDD|132555 TIGR03516, ppisom_GldI, peptidyl-prolyl isomerase, gliding motility-associated

 Score = 49.4 bits (118), Expect = 5e-07
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 4/100 (4%)

Query: 54  KNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMK 113
           K+  +  TPEFGD VT  Y    LDG    S  +   P T+K+    + +GL +G+  MK
Sbjct: 78  KDTGEGTTPEFGDLVTFEYDIRALDGDVIYSEEE-LGPQTYKVDQQDLFSGLRDGLKLMK 136

Query: 114 KRECAVFTFTLPSELRFGVEG-RDSLPPNSVVQFEVELVS 152
           + E A F F  PS   +G  G ++ + PN  +   V L++
Sbjct: 137 EGETATFLF--PSHKAYGYYGDQNKIGPNLPIISTVTLLN 174

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype. Length = 177

>gnl|CDD|237908 PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 45.5 bits (108), Expect = 6e-06
 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 20/116 (17%)

Query: 68  VTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSE 127
           V +H+   L DG+  +STR+   P  F+LG G ++ GL+  ++ +K  +    TF+L  E
Sbjct: 11  VLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKK--TFSLEPE 68

Query: 128 LRFGVEGRDSLPPNSVVQF------------EVELVSWITVVDLSKDGGIVKKILE 171
             FGV   D      ++Q+            E+  +   T +D S+  G++++I  
Sbjct: 69  AAFGVPSPD------LIQYFSRRDFMDAGEPEIGAIMLFTAMDGSEMPGVIREING 118

Length = 156

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 43.9 bits (104), Expect = 8e-06
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 15/73 (20%)

Query: 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK 381
              GNL +K G Y+ A + Y KA +        +D +           + N AA   KL 
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALE--------LDPDNA-------DAYYNLAAAYYKLG 48

Query: 382 DYQGAIELCSKVI 394
            Y+ A+E   K +
Sbjct: 49  KYEEALEDYEKAL 61

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 16/80 (20%)

Query: 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAA 375
           + A   K  GN LFK G Y+ A + Y KA +   ++                  + N A 
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDN---------------AEAYYNLAL 45

Query: 376 CCLKL-KDYQGAIELCSKVI 394
             LKL KDY+ A+E   K +
Sbjct: 46  AYLKLGKDYEEALEDLEKAL 65

Length = 69

>gnl|CDD|223976 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGF 273
           + Y  ++EDG V +    +   PL FI    Q+I GL+      +  E   V I  E  F
Sbjct: 11  LHYTLKVEDGEVVDTTDENYG-PLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAF 69

Query: 274 G 274
           G
Sbjct: 70  G 70

Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	403
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	100.0
KOG0549	188	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.97
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.95
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.94
KOG0544	108	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.94
KOG0544	108	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.93
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.9
KOG0549	188	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.89
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	99.89
KOG0552	226	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.87
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	99.86
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.85
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.85
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	99.79
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	99.78
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	99.75
PRK15095	156	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.75
KOG0552	226	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.74
COG1047	174	SlpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.74
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	99.72
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.71
PRK10737	196	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.69
KOG4234	271	consensus TPR repeat-containing protein [General f	99.52
PRK15095	156	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.46
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.3
COG1047	174	SlpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.28
KOG0553	304	consensus TPR repeat-containing protein [General f	99.28
PRK10737	196	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.23
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.2
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.03
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.02
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.02
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.01
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.94
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.68
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	98.65
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	98.56
PRK01490	435	tig trigger factor; Provisional	98.54
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.46
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.32
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.32
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	98.23
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.23
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.2
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.12
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.07
PRK01490	435	tig trigger factor; Provisional	98.07
PF13371	73	TPR_9: Tetratricopeptide repeat	98.06
PRK15359	144	type III secretion system chaperone protein SscB;	98.02
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	97.99
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.98
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.89
PRK15359	144	type III secretion system chaperone protein SscB;	97.88
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.83
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.77
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	97.72
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.7
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.66
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.6
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.58
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.52
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.51
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.47
PRK11189	296	lipoprotein NlpI; Provisional	97.36
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.34
KOG1310	758	consensus WD40 repeat protein [General function pr	97.32
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.28
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.27
KOG4555	175	consensus TPR repeat-containing protein [Function	97.27
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.27
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.25
KOG0553	304	consensus TPR repeat-containing protein [General f	97.23
PRK11189	296	lipoprotein NlpI; Provisional	97.23
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	97.19
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	97.17
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.1
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	97.09
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.05
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.03
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.03
PF13512	142	TPR_18: Tetratricopeptide repeat	97.0
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.94
KOG4234	271	consensus TPR repeat-containing protein [General f	96.94
PRK10370	198	formate-dependent nitrite reductase complex subuni	96.91
KOG2003	840	consensus TPR repeat-containing protein [General f	96.84
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.8
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.8
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	96.79
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.79
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	96.77
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.77
KOG1125	579	consensus TPR repeat-containing protein [General f	96.76
PRK12370	553	invasion protein regulator; Provisional	96.75
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	96.74
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	96.73
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	96.7
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	96.68
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.66
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.57
PRK10370	198	formate-dependent nitrite reductase complex subuni	96.53
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.53
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.41
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.35
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	96.33
KOG4648	536	consensus Uncharacterized conserved protein, conta	96.33
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.26
PRK15331	165	chaperone protein SicA; Provisional	96.22
PRK10803	263	tol-pal system protein YbgF; Provisional	96.2
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.19
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	96.19
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.19
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	96.13
PF13431	34	TPR_17: Tetratricopeptide repeat	96.03
PF13428	44	TPR_14: Tetratricopeptide repeat	96.02
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.0
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	95.94
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	95.82
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	95.8
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	95.73
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	95.61
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	95.59
KOG2076	895	consensus RNA polymerase III transcription factor	95.48
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	95.45
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	95.41
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.36
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	95.35
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.32
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	95.3
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	95.3
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.25
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	95.19
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	95.16
KOG1128	777	consensus Uncharacterized conserved protein, conta	95.05
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	95.02
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	94.97
PRK10803	263	tol-pal system protein YbgF; Provisional	94.94
PRK11788	389	tetratricopeptide repeat protein; Provisional	94.92
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	94.88
PRK11788	389	tetratricopeptide repeat protein; Provisional	94.86
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	94.73
PRK12370	553	invasion protein regulator; Provisional	94.66
PLN02789	320	farnesyltranstransferase	94.58
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	94.54
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	94.51
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.49
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	94.45
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	94.4
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.38
PF12688	120	TPR_5: Tetratrico peptide repeat	94.3
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	94.26
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	94.22
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.03
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.01
KOG0547	606	consensus Translocase of outer mitochondrial membr	93.98
KOG1125	579	consensus TPR repeat-containing protein [General f	93.87
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	93.81
KOG2796	366	consensus Uncharacterized conserved protein [Funct	93.73
COG4783	484	Putative Zn-dependent protease, contains TPR repea	93.71
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	93.57
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	93.51
KOG1126	638	consensus DNA-binding cell division cycle control	93.42
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	93.41
PLN02789	320	farnesyltranstransferase	93.3
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	93.17
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	93.12
KOG2003	840	consensus TPR repeat-containing protein [General f	93.09
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	93.07
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.01
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	92.8
KOG1126	638	consensus DNA-binding cell division cycle control	92.74
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	92.63
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	92.61
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	92.57
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	92.42
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	92.38
KOG3364	149	consensus Membrane protein involved in organellar	92.36
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	92.24
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	92.2
PRK14574	822	hmsH outer membrane protein; Provisional	91.68
PF04212	69	MIT: MIT (microtubule interacting and transport) d	91.66
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	91.59
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	91.56
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	90.94
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	90.78
PRK15331	165	chaperone protein SicA; Provisional	90.62
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	90.34
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	90.21
cd02656	75	MIT MIT: domain contained within Microtubule Inter	90.13
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	89.87
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	89.64
PRK14574	822	hmsH outer membrane protein; Provisional	89.11
KOG1129	478	consensus TPR repeat-containing protein [General f	89.1
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	88.87
KOG2076	895	consensus RNA polymerase III transcription factor	88.75
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	88.7
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	88.3
KOG3785	557	consensus Uncharacterized conserved protein [Funct	88.22
COG3947	361	Response regulator containing CheY-like receiver a	88.21
PF03704	146	BTAD: Bacterial transcriptional activator domain;	87.91
PF13428	44	TPR_14: Tetratricopeptide repeat	87.7
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	87.28
KOG2376	652	consensus Signal recognition particle, subunit Srp	87.14
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	86.9
COG4976	287	Predicted methyltransferase (contains TPR repeat)	86.81
KOG2376	652	consensus Signal recognition particle, subunit Srp	86.72
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	86.69
KOG3060	289	consensus Uncharacterized conserved protein [Funct	86.59
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	86.41
COG4700	251	Uncharacterized protein conserved in bacteria cont	85.85
PRK14720	906	transcript cleavage factor/unknown domain fusion p	85.62
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	85.61
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	85.49
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	85.08
PF13371	73	TPR_9: Tetratricopeptide repeat	85.07
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	84.96
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	84.78
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	84.69
PF13512	142	TPR_18: Tetratricopeptide repeat	84.58
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	84.42
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	83.97
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	83.85
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	83.47
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	83.23
KOG3785	557	consensus Uncharacterized conserved protein [Funct	83.2
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	82.97
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	82.87
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	82.56
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	82.35
PF12688	120	TPR_5: Tetratrico peptide repeat	82.19
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	81.99
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	81.79
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	81.64
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	81.56
KOG1128	777	consensus Uncharacterized conserved protein, conta	80.96
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	80.8
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	80.66
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	80.3

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-53  Score=401.73  Aligned_cols=288  Identities=46%  Similarity=0.738  Sum_probs=263.9

Q ss_pred             EccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCCCCCCCCC
Q 015659           54 KNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVE  133 (403)
Q Consensus        54 ~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~~~ayg~~  133 (403)
                      ++|+|+++|..||.|.+||++++.||+.|+||.+ +.|+.|.+|.+.++.+|+.++..|+.|                +.
T Consensus         1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~g----------------~~   63 (397)
T KOG0543|consen    1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKKG----------------EA   63 (397)
T ss_pred             CCCCCccCCCCCceeEEEEeEEecCCeecccccC-CCceeeecCCCcccccccccccccccc----------------cc
Confidence            4789999999999999999999999999999998 799999999999999999999999973                44


Q ss_pred             CCC-CCCCCCeEEEEEEeccceeeeccCCCcceeeEEeecCCc-CCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEe
Q 015659          134 GRD-SLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGER-DASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYL  211 (403)
Q Consensus       134 ~~~-~ip~~~~l~~~v~l~~~~~~~dv~~d~~v~k~il~~G~g-~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~  211 (403)
                      +.+ .+|+++++.|+|+|+          |++++|+|+++|.+ ..+|..+..|.+||...+.                 
T Consensus        64 ~~pp~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~-----------------  116 (397)
T KOG0543|consen   64 GSPPKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELE-----------------  116 (397)
T ss_pred             CCCCCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEEC-----------------
Confidence            444 799999999999998          88999999999999 7899998888877655554                 


Q ss_pred             eceEEEEeeccceEEeecCCCCCCCeEEEcCC-CCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCe
Q 015659          212 KDVSYIARLEDGTVFEKKGYDGEQPLEFITDE-EQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAK  290 (403)
Q Consensus       212 ~~v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~-~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~  290 (403)
                                ++ +|+++    ...+.|.+|+ ..+|.||+.||++|++||++.|+|+|+|+||+.+.+  ++.|||+++
T Consensus       117 ----------~~-~f~~~----~~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~--~p~IPPnA~  179 (397)
T KOG0543|consen  117 ----------DG-VFDQR----ELRFEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGE--PPLIPPNAT  179 (397)
T ss_pred             ----------Cc-ceecc----ccceEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCC--CCCCCCCce
Confidence                      44 56555    3458888888 589999999999999999999999999999965542  689999999


Q ss_pred             EEEEEEEeeec-cCcCccccCchHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHh
Q 015659          291 LYYEVEMMDFI-KEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSC  369 (403)
Q Consensus       291 l~f~iel~~i~-~~~~~~~m~~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~  369 (403)
                      |.|+|+|++|. +....|.|..+|++..|.+.|+.||.+||.|+|..|...|++|+++|++....++++.+.+..+++.|
T Consensus       180 l~yEVeL~~f~~~~~~s~~~~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~  259 (397)
T KOG0543|consen  180 LLYEVELLDFELKEDESWKMFAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLAC  259 (397)
T ss_pred             EEEEEEEEeeecCcccccccchHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHH
Confidence            99999999999 89999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHccCHHHHHHHHHHHHhcccccCC
Q 015659          370 WLNSAACCLKLKDYQGAIELCSKVIVEREAARG  402 (403)
Q Consensus       370 ~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~~  402 (403)
                      |+|+|+||+|+++|..|+.+|++||+++|.|.+
T Consensus       260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K  292 (397)
T KOG0543|consen  260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVK  292 (397)
T ss_pred             hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh
Confidence            999999999999999999999999999999963

>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.3e-30  Score=219.53  Aligned_cols=176  Identities=28%  Similarity=0.408  Sum_probs=135.1

Q ss_pred             EEeCCCccchhHHHhhcCcccCcEEEEEEEcCCCCCCCCCCCCCCCCCCeEEEEEEeccceee---eccCCCcceeeEEe
Q 015659           94 FKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWITV---VDLSKDGGIVKKIL  170 (403)
Q Consensus        94 ~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~~~ayg~~~~~~ip~~~~l~~~v~l~~~~~~---~dv~~d~~v~k~il  170 (403)
                      |.+|.+.++++++.++.+|+.|+++++  .+||+++||..+..   .-..+++.+.++.....   .....+..+...++
T Consensus         1 ~~~g~~~vi~gm~~~~~g~c~ge~rkv--v~pp~l~fg~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~   75 (188)
T KOG0549|consen    1 FTLGQGFVIPGMDQALEGMCNGEKRKV--VIPPHLGFGEGGRG---DLNILVITILLVLLFRASAAEKWNPDEELQIGVL   75 (188)
T ss_pred             CcccceEEecCHHHHhhhhhcccccee--ccCCcccccccccc---cccceEEEeeeeehhhhhhhhhcCCCCceeEEEE
Confidence            357888999999999999999999999  99999999955432   22234666665554322   12223333333333


Q ss_pred             ecCC-cCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCCCeEEEcCCCCcchH
Q 015659          171 EKGE-RDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAG  249 (403)
Q Consensus       171 ~~G~-g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~~~v~~g  249 (403)
                      .+-. -..+...+|.++                           +||+|.+.||++|||| |++++|++|+||.++||+|
T Consensus        76 ~~p~~C~~kak~GD~l~---------------------------~HY~g~leDGt~fdSS-~~rg~P~~f~LG~gqVIkG  127 (188)
T KOG0549|consen   76 KKPEECPEKAKKGDTLH---------------------------VHYTGSLEDGTKFDSS-YSRGAPFTFTLGTGQVIKG  127 (188)
T ss_pred             ECCccccccccCCCEEE---------------------------EEEEEEecCCCEEeee-ccCCCCEEEEeCCCceecc
Confidence            3211 111222333333                           6788888999999999 9999999999999999999


Q ss_pred             HHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeccCcC
Q 015659          250 LDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKV  305 (403)
Q Consensus       250 l~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~~~~~  305 (403)
                      ||++|.+||+||+..++|||++|||+.|.   ++.||+++.|+|+|||+++.+.+.
T Consensus       128 ~Dqgl~gMCvGEkRkl~IPp~LgYG~~G~---~~~IP~~A~LiFdiELv~i~~~~~  180 (188)
T KOG0549|consen  128 WDQGLLGMCVGEKRKLIIPPHLGYGERGA---PPKIPGDAVLIFDIELVKIERGPP  180 (188)
T ss_pred             HhHHhhhhCcccceEEecCccccCccCCC---CCCCCCCeeEEEEEEEEEeecCCC
Confidence            99999999999999999999999999998   566999999999999999998644

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=4.5e-28  Score=213.22  Aligned_cols=214  Identities=21%  Similarity=0.326  Sum_probs=178.5

Q ss_pred             CcceeeEEeecCCcC-CCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCCCeEEE
Q 015659          162 DGGIVKKILEKGERD-ASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (403)
Q Consensus       162 d~~v~k~il~~G~g~-~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~p~~~~  240 (403)
                      -.++.|+++..|+|. ..-.+|.+|++||....++.                         .++++|+| ...|.|+.+.
T Consensus         9 ~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e-------------------------~~tviDDs-Rk~gkPmeii   62 (329)
T KOG0545|consen    9 VEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDE-------------------------ERTVIDDS-RKVGKPMEII   62 (329)
T ss_pred             chhhhHhhccCCCccCccccCCceEEEEEEecccCc-------------------------ccccccch-hhcCCCeEEe
Confidence            357889999999985 23447899999998876653                         45678888 6789999999


Q ss_pred             cCCCCcchHHHHHHcccCCCcEEEEEEcCCC--------------CCCCc--------------------ccccCCCCCC
Q 015659          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEY--------------GFGNV--------------------EAKRDLATIP  286 (403)
Q Consensus       241 lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~--------------~yg~~--------------------~~~~~~~~ip  286 (403)
                      +|...-.|.|+.+|.+|+++|.+.|+|....              +-|..                    |.........
T Consensus        63 iGkkFkL~VwE~il~tM~v~EvaqF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~k  142 (329)
T KOG0545|consen   63 IGKKFKLEVWEIILTTMRVHEVAQFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQK  142 (329)
T ss_pred             eccccccHHHHHHHHHHhhhhHHHhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhh
Confidence            9988889999999999999999999987532              11111                    1000000112


Q ss_pred             CCCeEEEEEEEeeecc----CcCccccCchHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc---CCCCChHHH
Q 015659          287 SCAKLYYEVEMMDFIK----EKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE---DGSFVDDEQ  359 (403)
Q Consensus       287 ~~~~l~f~iel~~i~~----~~~~~~m~~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~---~~~~~~~~~  359 (403)
                      ..++|+|.|+|+.++.    ..+.|.|+.+||+..+..++++||.+|+.|+|++|..+|+.|+-+|..   ...+.+++|
T Consensus       143 nPqpL~FviellqVe~P~qYq~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW  222 (329)
T KOG0545|consen  143 NPQPLVFVIELLQVEAPSQYQRETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEW  222 (329)
T ss_pred             CCCceEeehhhhhccCchhhccccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHH
Confidence            2468999999999986    567799999999999999999999999999999999999999999866   556778999


Q ss_pred             HHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          360 KLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       360 ~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      .++..+...+++|+|+|+|+.++|.+++.+|+++|..+|+|-
T Consensus       223 ~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv  264 (329)
T KOG0545|consen  223 LELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV  264 (329)
T ss_pred             HHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence            999999999999999999999999999999999999999984

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=5.5e-27  Score=202.23  Aligned_cols=118  Identities=42%  Similarity=0.615  Sum_probs=111.0

Q ss_pred             cCCCccCCCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhc
Q 015659           31 SAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGII  110 (403)
Q Consensus        31 ~~~~~~~~~~~~~~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~  110 (403)
                      +...++....+.++++|++|++++.|+| ..|..+|.|.+||++++.||++||||+++++|+.|.||  ++|+||.++|.
T Consensus        86 f~~~~~k~~~v~~~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~  162 (205)
T COG0545          86 FLEKNAKEKGVKTLPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQ  162 (205)
T ss_pred             HHhhhcccCCceECCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHh
Confidence            4455566677888999999999999999 99999999999999999999999999999999999999  99999999999


Q ss_pred             CcccCcEEEEEEEcCCCCCCCCCCCC-CCCCCCeEEEEEEeccc
Q 015659          111 TMKKRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSW  153 (403)
Q Consensus       111 ~m~~Ge~~~v~~~vp~~~ayg~~~~~-~ip~~~~l~~~v~l~~~  153 (403)
                      +|++|+++++  +|||++|||.+|.+ .||||++|+|+|+|+++
T Consensus       163 ~M~vG~k~~l--~IP~~laYG~~g~~g~Ippns~LvFeVeLl~v  204 (205)
T COG0545         163 GMKVGGKRKL--TIPPELAYGERGVPGVIPPNSTLVFEVELLDV  204 (205)
T ss_pred             hCCCCceEEE--EeCchhccCcCCCCCCCCCCCeEEEEEEEEec
Confidence            9999999999  99999999999966 69999999999999986

>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.4e-26  Score=172.27  Aligned_cols=105  Identities=41%  Similarity=0.768  Sum_probs=102.2

Q ss_pred             CeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCC
Q 015659           47 GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPS  126 (403)
Q Consensus        47 g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~  126 (403)
                      |+.++++..|+|...|+.||.|++||++.+.||+.|+||.+++.||.|.+|.+++|.||++++..|.+|+++++  +|+|
T Consensus         2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakL--ti~p   79 (108)
T KOG0544|consen    2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKL--TISP   79 (108)
T ss_pred             CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhcchhcccccccee--eecc
Confidence            68899999999988899999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             CCCCCCCCCC-CCCCCCeEEEEEEeccc
Q 015659          127 ELRFGVEGRD-SLPPNSVVQFEVELVSW  153 (403)
Q Consensus       127 ~~ayg~~~~~-~ip~~~~l~~~v~l~~~  153 (403)
                      ++|||..|.+ .||||++|+|+|||+++
T Consensus        80 d~aYG~~G~p~~IppNatL~FdVEll~v  107 (108)
T KOG0544|consen   80 DYAYGPRGHPGGIPPNATLVFDVELLKV  107 (108)
T ss_pred             ccccCCCCCCCccCCCcEEEEEEEEEec
Confidence            9999999988 99999999999999976

>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=7.6e-26  Score=168.37  Aligned_cols=107  Identities=30%  Similarity=0.505  Sum_probs=99.3

Q ss_pred             ceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCCCeEEEcCC
Q 015659          164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDE  243 (403)
Q Consensus       164 ~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~  243 (403)
                      ++.+.++..|.+...|..++.|++                           ||+|.+.||+.|||| .+++.|+.|.||.
T Consensus         2 Gv~~~~i~~Gdg~tfpK~Gqtvt~---------------------------hYtg~L~dG~kfDSs-~dr~kPfkf~IGk   53 (108)
T KOG0544|consen    2 GVEKQVISPGDGRTFPKKGQTVTV---------------------------HYTGTLQDGKKFDSS-RDRGKPFKFKIGK   53 (108)
T ss_pred             CceeEEeeCCCCcccCCCCCEEEE---------------------------EEEeEecCCcEeecc-cccCCCeeEEecC
Confidence            466788999999889999999985                           478888899999999 7999999999999


Q ss_pred             CCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeec
Q 015659          244 EQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (403)
Q Consensus       244 ~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~  301 (403)
                      +.+|.||++++..|.+||++.++|+|+||||..|.   +..||||++|+|+|||+++.
T Consensus        54 geVIkGwdegv~qmsvGekakLti~pd~aYG~~G~---p~~IppNatL~FdVEll~v~  108 (108)
T KOG0544|consen   54 GEVIKGWDEGVAQMSVGEKAKLTISPDYAYGPRGH---PGGIPPNATLVFDVELLKVN  108 (108)
T ss_pred             cceeechhhcchhccccccceeeeccccccCCCCC---CCccCCCcEEEEEEEEEecC
Confidence            99999999999999999999999999999999997   78999999999999999874

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.5e-23  Score=180.99  Aligned_cols=107  Identities=36%  Similarity=0.516  Sum_probs=95.7

Q ss_pred             CCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCCCeEEE
Q 015659          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (403)
Q Consensus       161 ~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~p~~~~  240 (403)
                      -.+++..+++..|.|. .|..++.|++                           ||+|+|.||++||+| +++++|+.|.
T Consensus        99 ~~sgl~y~~~~~G~G~-~~~~~~~V~v---------------------------hY~G~l~~G~vFDsS-~~rg~p~~f~  149 (205)
T COG0545          99 LPSGLQYKVLKAGDGA-APKKGDTVTV---------------------------HYTGTLIDGTVFDSS-YDRGQPAEFP  149 (205)
T ss_pred             CCCCcEEEEEeccCCC-CCCCCCEEEE---------------------------EEEEecCCCCccccc-cccCCCceee
Confidence            3457788888888776 6667777774                           588899999999999 9999999999


Q ss_pred             cCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeec
Q 015659          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (403)
Q Consensus       241 lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~  301 (403)
                      ||  ++|+||+.+|.+|++|++++++|||++|||..+.   +..||||++|+|+|+|+++.
T Consensus       150 l~--~vI~Gw~egl~~M~vG~k~~l~IP~~laYG~~g~---~g~Ippns~LvFeVeLl~v~  205 (205)
T COG0545         150 LG--GVIPGWDEGLQGMKVGGKRKLTIPPELAYGERGV---PGVIPPNSTLVFEVELLDVK  205 (205)
T ss_pred             cC--CeeehHHHHHhhCCCCceEEEEeCchhccCcCCC---CCCCCCCCeEEEEEEEEecC
Confidence            98  9999999999999999999999999999999997   46699999999999999873

>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=7.7e-23  Score=172.59  Aligned_cols=110  Identities=36%  Similarity=0.608  Sum_probs=99.0

Q ss_pred             cCCCeEEEEEEcc-CCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEE
Q 015659           44 GNSGIKKKLLKNG-VDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTF  122 (403)
Q Consensus        44 ~~~g~~~~vl~~G-~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~  122 (403)
                      +...++..++..= ....+.+.||+|.+||++++.||++|+|||++++|++|.||.+++|+||+.+|.+|++||+|++  
T Consensus        66 ~~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl--  143 (188)
T KOG0549|consen   66 PDEELQIGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKL--  143 (188)
T ss_pred             CCCceeEEEEECCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEE--
Confidence            3455666666552 1447789999999999999999999999999999999999999999999999999999999999  


Q ss_pred             EcCCCCCCCCCCCC-CCCCCCeEEEEEEecccee
Q 015659          123 TLPSELRFGVEGRD-SLPPNSVVQFEVELVSWIT  155 (403)
Q Consensus       123 ~vp~~~ayg~~~~~-~ip~~~~l~~~v~l~~~~~  155 (403)
                      .|||+++||++|.+ .||++++|.|+|+|+.+..
T Consensus       144 ~IPp~LgYG~~G~~~~IP~~A~LiFdiELv~i~~  177 (188)
T KOG0549|consen  144 IIPPHLGYGERGAPPKIPGDAVLIFDIELVKIER  177 (188)
T ss_pred             ecCccccCccCCCCCCCCCCeeEEEEEEEEEeec
Confidence            99999999999977 7999999999999999854

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.89  E-value=7e-23  Score=182.88  Aligned_cols=118  Identities=33%  Similarity=0.496  Sum_probs=110.4

Q ss_pred             cCCCccCCCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhc
Q 015659           31 SAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGII  110 (403)
Q Consensus        31 ~~~~~~~~~~~~~~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~  110 (403)
                      +...++..+++..+++|++|+|+++|+| ..|..||.|.|||++++.||++|++|+.++.|+.|.+|  .+++||+++|.
T Consensus        87 fl~~~~k~~gv~~t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~  163 (206)
T PRK11570         87 FLEENAKKEGVNSTESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALT  163 (206)
T ss_pred             HHHHhhhcCCcEECCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHc
Confidence            4445566778899999999999999999 89999999999999999999999999998899999997  79999999999


Q ss_pred             CcccCcEEEEEEEcCCCCCCCCCCCC-CCCCCCeEEEEEEeccc
Q 015659          111 TMKKRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSW  153 (403)
Q Consensus       111 ~m~~Ge~~~v~~~vp~~~ayg~~~~~-~ip~~~~l~~~v~l~~~  153 (403)
                      +|++|++++|  .|||++|||..+.+ .|||+++++|+|+|+++
T Consensus       164 ~M~~G~k~~~--~IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i  205 (206)
T PRK11570        164 LMPVGSKWEL--TIPHELAYGERGAGASIPPFSTLVFEVELLEI  205 (206)
T ss_pred             CCCCCCEEEE--EECHHHcCCCCCCCCCcCCCCeEEEEEEEEEE
Confidence            9999999999  99999999999987 89999999999999886

>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=5.4e-22  Score=175.72  Aligned_cols=108  Identities=34%  Similarity=0.608  Sum_probs=104.1

Q ss_pred             eecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEc-CCcEEeccCCCCCCee-EEeCCCccchhHHHhhcCcccCcEEE
Q 015659           42 GLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLL-DGTKFDSTRDRYDPLT-FKLGTGQVATGLDNGIITMKKRECAV  119 (403)
Q Consensus        42 ~~~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~-~g~~~~ss~~~~~p~~-~~lG~~~~~~gl~~al~~m~~Ge~~~  119 (403)
                      .++++||+|+.++.|+| ..+..|+.|.+||.+++. +|.+|++++.. .|+. |.+|.+++|+||+.+|.+|++|++|+
T Consensus       116 ~tl~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~-kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRr  193 (226)
T KOG0552|consen  116 RTLPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGG-KPFKLFRLGSGEVIKGWDVGVEGMKVGGKRR  193 (226)
T ss_pred             eecCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCC-CCccccccCCCCCCchHHHhhhhhccCCeeE
Confidence            46799999999999999 999999999999999999 99999999866 8999 99999999999999999999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCCCCCCeEEEEEEeccc
Q 015659          120 FTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSW  153 (403)
Q Consensus       120 v~~~vp~~~ayg~~~~~~ip~~~~l~~~v~l~~~  153 (403)
                      |  +|||.+|||..+.+.||||++|+|+|+|+.+
T Consensus       194 v--iIPp~lgYg~~g~~~IppnstL~fdVEL~~v  225 (226)
T KOG0552|consen  194 V--IIPPELGYGKKGVPEIPPNSTLVFDVELLSV  225 (226)
T ss_pred             E--EeCccccccccCcCcCCCCCcEEEEEEEEec
Confidence            9  9999999999999999999999999999876

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=99.86  E-value=2.4e-21  Score=168.95  Aligned_cols=112  Identities=30%  Similarity=0.437  Sum_probs=103.5

Q ss_pred             CceeecCCCeEEEEEEc--cCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCc
Q 015659           39 EERGLGNSGIKKKLLKN--GVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRE  116 (403)
Q Consensus        39 ~~~~~~~~g~~~~vl~~--G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge  116 (403)
                      ..+..+++|++|++++.  |+| ..|+.||.|.+||++++.||++|++++.. .|+.|.+|.+++++||+++|.+|++||
T Consensus        62 ~~~~~t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~-~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge  139 (177)
T TIGR03516        62 VKYETSQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEEL-GPQTYKVDQQDLFSGLRDGLKLMKEGE  139 (177)
T ss_pred             CCceECCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCCC-CCEEEEeCCcchhHHHHHHHcCCCCCC
Confidence            34577899999999976  666 78999999999999999999999999875 699999999999999999999999999


Q ss_pred             EEEEEEEcCCCCCCCCCCCC-CCCCCCeEEEEEEeccce
Q 015659          117 CAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI  154 (403)
Q Consensus       117 ~~~v~~~vp~~~ayg~~~~~-~ip~~~~l~~~v~l~~~~  154 (403)
                      +++|  ++||++|||.+|.+ .||++++|+|+|+|+++.
T Consensus       140 ~~~~--~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~  176 (177)
T TIGR03516       140 TATF--LFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIK  176 (177)
T ss_pred             EEEE--EECHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence            9999  99999999999976 899999999999999874

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.85  E-value=8.7e-21  Score=175.50  Aligned_cols=120  Identities=31%  Similarity=0.547  Sum_probs=111.9

Q ss_pred             cCCCccCCCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhc
Q 015659           31 SAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGII  110 (403)
Q Consensus        31 ~~~~~~~~~~~~~~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~  110 (403)
                      +...+...+.+..+++|++|+|+++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.++  .++|||+++|.
T Consensus       131 fl~~~~k~~gv~~t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~  207 (269)
T PRK10902        131 YREKFAKEKGVKTTSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLK  207 (269)
T ss_pred             HHHHhccCCCcEECCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEecC--CcchHHHHHHh
Confidence            5556667778889999999999999999 79999999999999999999999999998899999996  79999999999


Q ss_pred             CcccCcEEEEEEEcCCCCCCCCCCCCCCCCCCeEEEEEEecccee
Q 015659          111 TMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWIT  155 (403)
Q Consensus       111 ~m~~Ge~~~v~~~vp~~~ayg~~~~~~ip~~~~l~~~v~l~~~~~  155 (403)
                      +|++|+++.|  +||++++||..+.+.||++++++|+|+|+++..
T Consensus       208 ~Mk~Gek~~l--~IP~~laYG~~g~~gIppns~LvfeVeLl~V~~  250 (269)
T PRK10902        208 NIKKGGKIKL--VIPPELAYGKAGVPGIPANSTLVFDVELLDVKP  250 (269)
T ss_pred             cCCCCcEEEE--EECchhhCCCCCCCCCCCCCcEEEEEEEEEecc
Confidence            9999999999  999999999999889999999999999998853

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=4.7e-20  Score=174.65  Aligned_cols=274  Identities=22%  Similarity=0.287  Sum_probs=183.7

Q ss_pred             cccccccccCCCcccccccc--cccc--c-cCCCccCCCceeecCCCeEEEEEEccCC-CCCCCCCCEEEEEEEEEEcCC
Q 015659            6 VMTLEKGANLSDIDGEEEEP--GEVI--E-SAAPLKVGEERGLGNSGIKKKLLKNGVD-WDTPEFGDEVTIHYVGTLLDG   79 (403)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~--~~~~--~-~~~~~~~~~~~~~~~~g~~~~vl~~G~G-~~~~~~gd~V~v~y~~~~~~g   79 (403)
                      .|++.++.|+..|..-...+  .+..  | .++....--++.+.+++|.++|+++|.| ...|..|..|.+||.++..++
T Consensus        39 ~~~lg~g~vi~~~~~gv~tm~~g~~~~pp~ip~~a~l~fe~el~Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~  118 (397)
T KOG0543|consen   39 KFDLGKGSVIKGWDLGVATMKKGEAGSPPKIPSNATLLFEVELLDGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG  118 (397)
T ss_pred             eeecCCCccccccccccccccccccCCCCCCCCCcceeeeecccCCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc
Confidence            47888999999887522211  2221  1 1122222223455699999999999999 678999999999999999777


Q ss_pred             cEEeccCCCCCCeeEEeCC-CccchhHHHhhcCcccCcEEEEEEEcCCCCCCCCCCCC--CCCCCCeEEEEEEeccceee
Q 015659           80 TKFDSTRDRYDPLTFKLGT-GQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD--SLPPNSVVQFEVELVSWITV  156 (403)
Q Consensus        80 ~~~~ss~~~~~p~~~~lG~-~~~~~gl~~al~~m~~Ge~~~v~~~vp~~~ayg~~~~~--~ip~~~~l~~~v~l~~~~~~  156 (403)
                       +|+++.   -.|.|.+|. ..++.||+.||..|++||.+.|  +|+|+++||+.+..  .|||++++.|+|+|+++...
T Consensus       119 -~f~~~~---~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v--~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~  192 (397)
T KOG0543|consen  119 -VFDQRE---LRFEFGEGEDIDVIEGLEIALRMMKVGEVALV--TIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELK  192 (397)
T ss_pred             -ceeccc---cceEEecCCccchhHHHHHHHHhcCccceEEE--EeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecC
Confidence             777653   457888887 5799999999999999999999  99999999955543  99999999999999998522


Q ss_pred             eccCCCcceeeEEeecCCcCCCCCCCCceEEEEE-eeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCC
Q 015659          157 VDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQ-VMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQ  235 (403)
Q Consensus       157 ~dv~~d~~v~k~il~~G~g~~~p~~~~~V~i~y~-~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~  235 (403)
                      .+.+               |..   .....+... .....|+..                                    
T Consensus       193 ~~~s---------------~~~---~~~e~l~~A~~~ke~Gn~~------------------------------------  218 (397)
T KOG0543|consen  193 EDES---------------WKM---FAEERLEAADRKKERGNVL------------------------------------  218 (397)
T ss_pred             cccc---------------ccc---chHHHHHHHHHHHHhhhHH------------------------------------
Confidence            2211               100   000000000 001111111                                    


Q ss_pred             CeEEEcCCC-CcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeccCcCccccCchHH
Q 015659          236 PLEFITDEE-QVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGK  314 (403)
Q Consensus       236 p~~~~lG~~-~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~~~~~~~~m~~~e~  314 (403)
                         |.-|.- ....-.+.|+.-|              .|..                              ..++ .+++
T Consensus       219 ---fK~gk~~~A~~~Yerav~~l--------------~~~~------------------------------~~~~-ee~~  250 (397)
T KOG0543|consen  219 ---FKEGKFKLAKKRYERAVSFL--------------EYRR------------------------------SFDE-EEQK  250 (397)
T ss_pred             ---HhhchHHHHHHHHHHHHHHh--------------hccc------------------------------cCCH-HHHH
Confidence               222211 1234445555443              1100                              0010 2222


Q ss_pred             HHHHHHH---HHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHH
Q 015659          315 IEAAGRK---KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCS  391 (403)
Q Consensus       315 ~~~~~~~---k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~  391 (403)
                      ...+.++   .+.+--+.|.+.|..|+..-.++|.+               ++-+++.++.++.|++-+++|+.|+.+..
T Consensus       251 ~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~---------------~~~N~KALyRrG~A~l~~~e~~~A~~df~  315 (397)
T KOG0543|consen  251 KAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL---------------DPNNVKALYRRGQALLALGEYDLARDDFQ  315 (397)
T ss_pred             HHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc---------------CCCchhHHHHHHHHHHhhccHHHHHHHHH
Confidence            3223322   34455567899999999999999997               55568899999999999999999999999


Q ss_pred             HHHhcccccCC
Q 015659          392 KVIVEREAARG  402 (403)
Q Consensus       392 ~aL~~dp~~~~  402 (403)
                      +||+++|.|..
T Consensus       316 ka~k~~P~Nka  326 (397)
T KOG0543|consen  316 KALKLEPSNKA  326 (397)
T ss_pred             HHHHhCCCcHH
Confidence            99999999963

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.79  E-value=1e-18  Score=156.10  Aligned_cols=107  Identities=33%  Similarity=0.524  Sum_probs=95.4

Q ss_pred             CCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCCCeEEE
Q 015659          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (403)
Q Consensus       161 ~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~p~~~~  240 (403)
                      ...++..+++++|.|. .|..++.|.+|                           |+|++.||++||+| |.+++|+.|.
T Consensus       100 t~sGl~y~vi~~G~G~-~p~~~d~V~v~---------------------------Y~g~l~dG~vfdss-~~~g~P~~f~  150 (206)
T PRK11570        100 TESGLQFRVLTQGEGA-IPARTDRVRVH---------------------------YTGKLIDGTVFDSS-VARGEPAEFP  150 (206)
T ss_pred             CCCCcEEEEEeCCCCC-CCCCCCEEEEE---------------------------EEEEECCCCEEEec-cCCCCCeEEE
Confidence            3457889999999996 68888888865                           66677789999999 8889999999


Q ss_pred             cCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeec
Q 015659          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (403)
Q Consensus       241 lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~  301 (403)
                      +|  .++|||+.+|.+|++|+++.|+||+++|||+.+.   ++.|||+++|+|+|+|++|.
T Consensus       151 l~--~vipG~~eaL~~M~~G~k~~~~IP~~lAYG~~g~---~~~Ipp~s~Lif~veLl~i~  206 (206)
T PRK11570        151 VN--GVIPGWIEALTLMPVGSKWELTIPHELAYGERGA---GASIPPFSTLVFEVELLEIL  206 (206)
T ss_pred             ee--chhhHHHHHHcCCCCCCEEEEEECHHHcCCCCCC---CCCcCCCCeEEEEEEEEEEC
Confidence            97  7999999999999999999999999999999987   57899999999999999973

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=99.78  E-value=1.2e-18  Score=137.29  Aligned_cols=92  Identities=47%  Similarity=0.805  Sum_probs=86.7

Q ss_pred             CCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCCCCCCCCCCCC-
Q 015659           58 DWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD-  136 (403)
Q Consensus        58 G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~~~ayg~~~~~-  136 (403)
                      |..+|+.||.|.|||++++.+|++|++++..+.|+.|.+|.+.+++||+++|.+|++|++++|  .|||+++||..+.. 
T Consensus         1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~--~vp~~~ayg~~~~~~   78 (94)
T PF00254_consen    1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREF--YVPPELAYGEKGLEP   78 (94)
T ss_dssp             SSSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEE--EEEGGGTTTTTTBCT
T ss_pred             CCccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeee--EeCChhhcCccccCC
Confidence            345799999999999999999999999988889999999999999999999999999999999  99999999999974 


Q ss_pred             -CCCCCCeEEEEEEec
Q 015659          137 -SLPPNSVVQFEVELV  151 (403)
Q Consensus       137 -~ip~~~~l~~~v~l~  151 (403)
                       .||++++++|+|+|+
T Consensus        79 ~~ip~~~~l~f~Iell   94 (94)
T PF00254_consen   79 PKIPPNSTLVFEIELL   94 (94)
T ss_dssp             TTBTTTSEEEEEEEEE
T ss_pred             CCcCCCCeEEEEEEEC
Confidence             699999999999985

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=99.75  E-value=1.5e-17  Score=145.06  Aligned_cols=83  Identities=19%  Similarity=0.256  Sum_probs=74.4

Q ss_pred             eEEEEeeccceEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEE
Q 015659          214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYY  293 (403)
Q Consensus       214 v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f  293 (403)
                      +||++++.||++|+++ +. ..|+.|.+|.+++++||+.+|.+|++||+++|++|+++|||..+.   ...|||+++|+|
T Consensus        94 v~Y~~~~~dG~v~~ss-~~-~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~~~iP~~~AYG~~g~---~~~Ippns~L~f  168 (177)
T TIGR03516        94 FEYDIRALDGDVIYSE-EE-LGPQTYKVDQQDLFSGLRDGLKLMKEGETATFLFPSHKAYGYYGD---QNKIGPNLPIIS  168 (177)
T ss_pred             EEEEEEeCCCCEEEeC-CC-CCCEEEEeCCcchhHHHHHHHcCCCCCCEEEEEECHHHcCCCCCC---CCCcCcCCcEEE
Confidence            3466677788889888 44 459999999999999999999999999999999999999999886   578999999999


Q ss_pred             EEEEeeec
Q 015659          294 EVEMMDFI  301 (403)
Q Consensus       294 ~iel~~i~  301 (403)
                      +|+|++|.
T Consensus       169 ~IeL~~i~  176 (177)
T TIGR03516       169 TVTLLNIK  176 (177)
T ss_pred             EEEEEEec
Confidence            99999986

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.75  E-value=5.2e-18  Score=145.19  Aligned_cols=129  Identities=25%  Similarity=0.366  Sum_probs=95.7

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCCCCCCCCCCCC---C
Q 015659           61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD---S  137 (403)
Q Consensus        61 ~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~~~ayg~~~~~---~  137 (403)
                      .++.|+.|.+||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++|++++|  .|||+.|||.++..   .
T Consensus         4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v--~ipp~~ayG~~d~~~v~~   81 (156)
T PRK15095          4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTF--SLEPEAAFGVPSPDLIQY   81 (156)
T ss_pred             ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEE--EEChHHhcCCCChHHEEE
Confidence            578999999999999999999999998779999999999999999999999999999999  99999999999855   2


Q ss_pred             CCCCCeEEEEEEeccceeeeccC-CCcce-eeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeec
Q 015659          138 LPPNSVVQFEVELVSWITVVDLS-KDGGI-VKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK  201 (403)
Q Consensus       138 ip~~~~l~~~v~l~~~~~~~dv~-~d~~v-~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~  201 (403)
                      +|....-.. -+ ..+.....+. .++.. ..+|+.-        .++.|++++||+|+|.++.|+
T Consensus        82 vp~~~f~~~-~~-~~~G~~~~~~~~~G~~~~~~V~~i--------~~~~v~vD~NHPLAGk~L~f~  137 (156)
T PRK15095         82 FSRRDFMDA-GE-PEIGAIMLFTAMDGSEMPGVIREI--------NGDSITVDFNHPLAGQTVHFD  137 (156)
T ss_pred             ecHHHCCcc-cC-CCCCCEEEEECCCCCEEEEEEEEE--------cCCEEEEECCCcCCCCEEEEE
Confidence            221110000 00 1111111111 22322 2233332        567999999999999998874

>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=1.2e-17  Score=148.14  Aligned_cols=82  Identities=32%  Similarity=0.537  Sum_probs=75.2

Q ss_pred             eEEEEeec-cceEEeecCCCCCCCeE-EEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeE
Q 015659          214 VSYIARLE-DGTVFEKKGYDGEQPLE-FITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKL  291 (403)
Q Consensus       214 v~y~g~~~-~g~~fd~s~~~~~~p~~-~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l  291 (403)
                      ++|+|++. +|++||++  ..+.|+. |.+|.+.||+||+.++.+|++|.+.+|+|||.+|||..+.    +.|||+++|
T Consensus       143 v~Y~Gkl~~~GkvFd~~--~~~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrviIPp~lgYg~~g~----~~IppnstL  216 (226)
T KOG0552|consen  143 VRYIGKLKGNGKVFDSN--FGGKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRVIIPPELGYGKKGV----PEIPPNSTL  216 (226)
T ss_pred             EEEEEEecCCCeEeecc--cCCCCccccccCCCCCCchHHHhhhhhccCCeeEEEeCccccccccCc----CcCCCCCcE
Confidence            45777775 89999998  5678999 9999999999999999999999999999999999999997    699999999


Q ss_pred             EEEEEEeeec
Q 015659          292 YYEVEMMDFI  301 (403)
Q Consensus       292 ~f~iel~~i~  301 (403)
                      +|+|+|+.+.
T Consensus       217 ~fdVEL~~v~  226 (226)
T KOG0552|consen  217 VFDVELLSVK  226 (226)
T ss_pred             EEEEEEEecC
Confidence            9999999873

>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=9e-18  Score=142.84  Aligned_cols=129  Identities=29%  Similarity=0.424  Sum_probs=96.4

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCCCCCCCCCCCC---C
Q 015659           61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD---S  137 (403)
Q Consensus        61 ~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~~~ayg~~~~~---~  137 (403)
                      .+..||.|.+||++++.||++|++|...+.|+.|.+|.++++++|++||.+|.+|++.+|  .|||+.|||.+.+.   .
T Consensus         2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V--~IpPE~AfGe~~~~lvq~   79 (174)
T COG1047           2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTV--EIPPEDAFGEYDPDLVQR   79 (174)
T ss_pred             cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEE--EeCchHhcCCCChHHeEE
Confidence            478999999999999999999999987568999999999999999999999999999999  99999999999865   2


Q ss_pred             CCCCCeEEEEEEeccceeeeccC-CCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeec
Q 015659          138 LPPNSVVQFEVELVSWITVVDLS-KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK  201 (403)
Q Consensus       138 ip~~~~l~~~v~l~~~~~~~dv~-~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~  201 (403)
                      +|.+..-... + +.+....... +++.+.-+|+.-        .++.|+++|||+|++.++.|+
T Consensus        80 vp~~~F~~~~-~-~~vGm~~~~~~~~~~~~~~V~~V--------~~~~V~VDfNHpLAGktL~fe  134 (174)
T COG1047          80 VPRDEFQGVG-E-LEVGMEVEAEGGDGEIPGVVTEV--------SGDRVTVDFNHPLAGKTLHFE  134 (174)
T ss_pred             ecHHHhCcCC-C-CCCCcEEEEcCCCceeeEEEEEE--------cCCEEEEeCCCcCCCCeEEEE
Confidence            3322111110 0 1111111111 222222223222        567999999999999999885

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=99.72  E-value=7.9e-17  Score=126.84  Aligned_cols=82  Identities=33%  Similarity=0.584  Sum_probs=72.7

Q ss_pred             eEEEEeeccceEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEE
Q 015659          214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYY  293 (403)
Q Consensus       214 v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f  293 (403)
                      +||.+++.+|++|+++ +..+.|++|.+|.+.+++||+.+|.+|++||++.|++|++++||+.+...  ..||++++|+|
T Consensus        13 i~y~~~~~~g~~~~~~-~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~--~~ip~~~~l~f   89 (94)
T PF00254_consen   13 IHYTGRLEDGKVFDSS-YQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEP--PKIPPNSTLVF   89 (94)
T ss_dssp             EEEEEEETTSEEEEET-TTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCT--TTBTTTSEEEE
T ss_pred             EEEEEEECCCcEEEEe-eecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCC--CCcCCCCeEEE
Confidence            3455666678889988 77889999999999999999999999999999999999999999988632  45999999999


Q ss_pred             EEEEe
Q 015659          294 EVEMM  298 (403)
Q Consensus       294 ~iel~  298 (403)
                      +|+|+
T Consensus        90 ~Iell   94 (94)
T PF00254_consen   90 EIELL   94 (94)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99986

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.71  E-value=1.3e-16  Score=147.68  Aligned_cols=108  Identities=30%  Similarity=0.519  Sum_probs=95.8

Q ss_pred             CCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCCCeEEE
Q 015659          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (403)
Q Consensus       161 ~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~p~~~~  240 (403)
                      .+.|+.++++.+|.|. .|..++.|.+|                           |.|++.||++||++ +.++.|+.|.
T Consensus       144 t~sGl~y~Vi~~G~G~-~p~~gD~V~V~---------------------------Y~g~l~dG~vfdss-~~~g~p~~f~  194 (269)
T PRK10902        144 TSTGLLYKVEKEGTGE-APKDSDTVVVN---------------------------YKGTLIDGKEFDNS-YTRGEPLSFR  194 (269)
T ss_pred             CCCccEEEEEeCCCCC-CCCCCCEEEEE---------------------------EEEEeCCCCEeecc-ccCCCceEEe
Confidence            4567899999999996 78888888866                           56666788999998 8889999999


Q ss_pred             cCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeccC
Q 015659          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKE  303 (403)
Q Consensus       241 lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~~~  303 (403)
                      ++  .++|||+.+|.+|++|+++.|+||++++||..+.    ..|||+++|+|+|+|++|...
T Consensus       195 l~--~vipG~~EaL~~Mk~Gek~~l~IP~~laYG~~g~----~gIppns~LvfeVeLl~V~~~  251 (269)
T PRK10902        195 LD--GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGV----PGIPANSTLVFDVELLDVKPA  251 (269)
T ss_pred             cC--CcchHHHHHHhcCCCCcEEEEEECchhhCCCCCC----CCCCCCCcEEEEEEEEEeccC
Confidence            96  7999999999999999999999999999999875    579999999999999999753

>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.69  E-value=8.7e-17  Score=141.23  Aligned_cols=128  Identities=16%  Similarity=0.182  Sum_probs=94.7

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCCCCCCCCCCCC---C
Q 015659           61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD---S  137 (403)
Q Consensus        61 ~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~~~ayg~~~~~---~  137 (403)
                      +++.+++|+|+|++++.+|++|++|+. +.|+.|++|.++++|+|+++|.+|++|++.+|  .|||+.|||++...   .
T Consensus         2 kI~~~~vV~l~Y~l~~~dG~v~dst~~-~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v--~l~peeAyGe~d~~lV~~   78 (196)
T PRK10737          2 KVAKDLVVSLAYQVRTEDGVLVDESPV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDV--AVGANDAYGQYDENLVQR   78 (196)
T ss_pred             ccCCCCEEEEEEEEEeCCCCEEEecCC-CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEE--EEChHHhcCCCChHHEEE
Confidence            467899999999999999999999986 48999999999999999999999999999999  99999999999865   2


Q ss_pred             CCCCCeEEEEEEeccceeeeccC-CCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeec
Q 015659          138 LPPNSVVQFEVELVSWITVVDLS-KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK  201 (403)
Q Consensus       138 ip~~~~l~~~v~l~~~~~~~dv~-~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~  201 (403)
                      +|.... . .++-+.+....... .++.+..+|+.-        ..+.|++++||||++.++.|+
T Consensus        79 vpr~~F-~-~~~~l~~G~~~~~~~~~G~~~~~V~ev--------~~d~V~vD~NHPLAG~~L~F~  133 (196)
T PRK10737         79 VPKDVF-M-GVDELQVGMRFLAETDQGPVPVEITAV--------EDDHVVVDGNHMLAGQNLKFN  133 (196)
T ss_pred             ecHHHC-C-CccCCCCCCEEEEeCCCCcEEEEEEEE--------cCCEEEEECCCcCCCCEEEEE
Confidence            322110 0 00001111111111 223222233322        567999999999999998885

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.52  E-value=3.2e-14  Score=122.59  Aligned_cols=76  Identities=41%  Similarity=0.562  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHH
Q 015659          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI  394 (403)
Q Consensus       315 ~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL  394 (403)
                      +..+..+|..||++|++|+|+.|..+|+.||.++.+.+          .+.+..||+|+|+|.+|++.|..||.+|++||
T Consensus        92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~----------~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai  161 (271)
T KOG4234|consen   92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS----------TEERSILYSNRAAALIKLRKWESAIEDCSKAI  161 (271)
T ss_pred             HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc----------HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH
Confidence            78899999999999999999999999999999976644          56788899999999999999999999999999


Q ss_pred             hccccc
Q 015659          395 VEREAA  400 (403)
Q Consensus       395 ~~dp~~  400 (403)
                      +++|.+
T Consensus       162 el~pty  167 (271)
T KOG4234|consen  162 ELNPTY  167 (271)
T ss_pred             hcCchh
Confidence            999965

>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.46  E-value=1.9e-13  Score=117.12  Aligned_cols=64  Identities=20%  Similarity=0.358  Sum_probs=58.9

Q ss_pred             eEEEEeeccceEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCccc
Q 015659          214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA  278 (403)
Q Consensus       214 v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~  278 (403)
                      +||++++.||++||+| +..++|+.|.+|.+++++||+.+|.+|++|+++.|.|||++|||+...
T Consensus        13 v~Y~~~~~dG~v~dst-~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d~   76 (156)
T PRK15095         13 VHFTLKLDDGSTAEST-RNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPSP   76 (156)
T ss_pred             EEEEEEeCCCCEEEEC-CCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh
Confidence            6788888899999999 677899999999999999999999999999999999999999997643

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.30  E-value=4.3e-12  Score=122.45  Aligned_cols=79  Identities=29%  Similarity=0.450  Sum_probs=72.3

Q ss_pred             ccccCchHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHH
Q 015659          306 PWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQG  385 (403)
Q Consensus       306 ~~~m~~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~  385 (403)
                      .-.|..++++..|..+|.+||.+|++|+|.+||+.|++||.++...               ..+|+|||+||..+|+|++
T Consensus       103 ~~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~e---------------piFYsNraAcY~~lgd~~~  167 (606)
T KOG0547|consen  103 KKAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDE---------------PIFYSNRAACYESLGDWEK  167 (606)
T ss_pred             hhccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCC---------------chhhhhHHHHHHHHhhHHH
Confidence            3467889999999999999999999999999999999999984432               4699999999999999999


Q ss_pred             HHHHHHHHHhcccc
Q 015659          386 AIELCSKVIVEREA  399 (403)
Q Consensus       386 ai~~~~~aL~~dp~  399 (403)
                      ++++|++||+++|.
T Consensus       168 Vied~TkALEl~P~  181 (606)
T KOG0547|consen  168 VIEDCTKALELNPD  181 (606)
T ss_pred             HHHHHHHHhhcCcH
Confidence            99999999999996

>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=1.4e-11  Score=105.06  Aligned_cols=64  Identities=30%  Similarity=0.457  Sum_probs=58.1

Q ss_pred             eEEEEeeccceEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCccc
Q 015659          214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA  278 (403)
Q Consensus       214 v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~  278 (403)
                      ++|++++.||++||+| .....|+.|.+|.++++|||+.||.+|.+|++..|.|||+.|||....
T Consensus        11 i~Y~~~~~dg~v~Dtt-~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~~   74 (174)
T COG1047          11 LHYTLKVEDGEVVDTT-DENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYDP   74 (174)
T ss_pred             EEEEEEecCCcEEEcc-cccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCCh
Confidence            6788888889999998 444789999999999999999999999999999999999999998654

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.28  E-value=5.8e-12  Score=115.52  Aligned_cols=75  Identities=28%  Similarity=0.377  Sum_probs=68.0

Q ss_pred             CchHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHH
Q 015659          310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIEL  389 (403)
Q Consensus       310 ~~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~  389 (403)
                      +++|-...|+++|.+||.+.++++|+.|+.+|.+||.+.               +....+|.|+|++|++|++|..|+++
T Consensus        73 ~~~e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~---------------P~nAVyycNRAAAy~~Lg~~~~AVkD  137 (304)
T KOG0553|consen   73 TPEEDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELD---------------PTNAVYYCNRAAAYSKLGEYEDAVKD  137 (304)
T ss_pred             ChHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC---------------CCcchHHHHHHHHHHHhcchHHHHHH
Confidence            344788999999999999999999999999999999983               33467999999999999999999999


Q ss_pred             HHHHHhcccc
Q 015659          390 CSKVIVEREA  399 (403)
Q Consensus       390 ~~~aL~~dp~  399 (403)
                      |..||.+||.
T Consensus       138 ce~Al~iDp~  147 (304)
T KOG0553|consen  138 CESALSIDPH  147 (304)
T ss_pred             HHHHHhcChH
Confidence            9999999985

>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.23  E-value=3.6e-11  Score=105.85  Aligned_cols=63  Identities=19%  Similarity=0.417  Sum_probs=56.3

Q ss_pred             eEEEEeeccceEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCccc
Q 015659          214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA  278 (403)
Q Consensus       214 v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~  278 (403)
                      ++|+.++.+|++||+|  ....|+.|.+|.++++|+|+.+|.+|.+|++..|.|||+.|||+...
T Consensus        11 l~Y~l~~~dG~v~dst--~~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d~   73 (196)
T PRK10737         11 LAYQVRTEDGVLVDES--PVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDE   73 (196)
T ss_pred             EEEEEEeCCCCEEEec--CCCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh
Confidence            5677777788889988  34789999999999999999999999999999999999999997654

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=2.7e-11  Score=112.12  Aligned_cols=74  Identities=30%  Similarity=0.408  Sum_probs=68.3

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      .|...|+.||++||.++|+.|+.+|+++|+.-..+           ..++..||+|||+|++-+++|.+||.+|.+||.+
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D-----------~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~  148 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCAD-----------PDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL  148 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCC-----------ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            89999999999999999999999999999974333           5677899999999999999999999999999999


Q ss_pred             ccccC
Q 015659          397 REAAR  401 (403)
Q Consensus       397 dp~~~  401 (403)
                      +|.+.
T Consensus       149 ~P~h~  153 (390)
T KOG0551|consen  149 KPTHL  153 (390)
T ss_pred             Ccchh
Confidence            99875

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.03  E-value=5.6e-10  Score=117.32  Aligned_cols=102  Identities=23%  Similarity=0.325  Sum_probs=86.7

Q ss_pred             CCCCCCCeEEEEEEEeeeccCcCccccCchHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHH
Q 015659          283 ATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLV  362 (403)
Q Consensus       283 ~~ip~~~~l~f~iel~~i~~~~~~~~m~~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~  362 (403)
                      ..+|+..++....++..++. ...|.|+.+++...+..+|+.||.+|+.|+|.+|+..|++||.+...            
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~------------  159 (615)
T TIGR00990        93 STAPKNAPVEPADELPEIDE-SSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD------------  159 (615)
T ss_pred             CCCCCCCCCCccccccccch-hhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc------------
Confidence            34566666666666665553 56799999999999999999999999999999999999999986321            


Q ss_pred             HHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          363 KSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       363 ~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                          ..+|+|+|.||+++++|.+|+.+|++||+++|.+.
T Consensus       160 ----~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~  194 (615)
T TIGR00990       160 ----PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYS  194 (615)
T ss_pred             ----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCH
Confidence                13799999999999999999999999999999874

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=3.9e-10  Score=110.45  Aligned_cols=70  Identities=34%  Similarity=0.466  Sum_probs=63.0

Q ss_pred             HHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIV  395 (403)
Q Consensus       316 ~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~  395 (403)
                      +.+...|..||++|+.|+|..|++.|.+||+.               .+-...+|+|||+||+|++++..|+.+|+++++
T Consensus       356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr---------------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie  420 (539)
T KOG0548|consen  356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR---------------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIE  420 (539)
T ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---------------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            34777889999999999999999999999997               233467999999999999999999999999999


Q ss_pred             ccccc
Q 015659          396 EREAA  400 (403)
Q Consensus       396 ~dp~~  400 (403)
                      +||.+
T Consensus       421 L~p~~  425 (539)
T KOG0548|consen  421 LDPNF  425 (539)
T ss_pred             cCchH
Confidence            99975

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.02  E-value=7.4e-10  Score=81.44  Aligned_cols=66  Identities=27%  Similarity=0.372  Sum_probs=60.2

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc-CHHHHHHHHHHHHhc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-DYQGAIELCSKVIVE  396 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~-~~~~ai~~~~~aL~~  396 (403)
                      +..+...|+.+|+.++|.+|+..|++|+++               .+....++.|||.||++++ +|.+|+.++++||++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---------------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL---------------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---------------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            567788999999999999999999999998               3334669999999999999 799999999999999


Q ss_pred             cc
Q 015659          397 RE  398 (403)
Q Consensus       397 dp  398 (403)
                      +|
T Consensus        68 ~P   69 (69)
T PF13414_consen   68 DP   69 (69)
T ss_dssp             ST
T ss_pred             Cc
Confidence            98

...

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.01  E-value=2.1e-10  Score=106.56  Aligned_cols=90  Identities=23%  Similarity=0.307  Sum_probs=61.0

Q ss_pred             chHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCC----------------hHHH---HHHHHHHHHhhh
Q 015659          311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFV----------------DDEQ---KLVKSLRVSCWL  371 (403)
Q Consensus       311 ~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~----------------~~~~---~~~~~~~~~~~~  371 (403)
                      .++.+..+..+|++||++||.|+|.+|+.+|.+++....+.+...                +.++   -.++..++++|+
T Consensus        90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYS  169 (536)
T KOG4648|consen   90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYS  169 (536)
T ss_pred             HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence            456788899999999999999999999999999999754322100                1111   224555566666


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          372 NSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       372 N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      .++++...|+...+|.++|+.||+++|.+
T Consensus       170 RR~~AR~~Lg~~~EAKkD~E~vL~LEP~~  198 (536)
T KOG4648|consen  170 RRMQARESLGNNMEAKKDCETVLALEPKN  198 (536)
T ss_pred             HHHHHHHHHhhHHHHHHhHHHHHhhCccc
Confidence            66666666666666666666666666654

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=5.6e-10  Score=99.11  Aligned_cols=72  Identities=29%  Similarity=0.377  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHH
Q 015659          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI  394 (403)
Q Consensus       315 ~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL  394 (403)
                      -..+.++|+.||.+|..++|..|+.+|.+||.+               .+..++.+.|+|.||||+++|..+..+|.+||
T Consensus         7 s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~---------------nP~~~~Y~tnralchlk~~~~~~v~~dcrral   71 (284)
T KOG4642|consen    7 SESAEQLKEQGNKCFIPKRYDDAIDCYSRAICI---------------NPTVASYYTNRALCHLKLKHWEPVEEDCRRAL   71 (284)
T ss_pred             chHHHHHHhccccccchhhhchHHHHHHHHHhc---------------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH
Confidence            356889999999999999999999999999997               45557899999999999999999999999999


Q ss_pred             hcccccC
Q 015659          395 VEREAAR  401 (403)
Q Consensus       395 ~~dp~~~  401 (403)
                      +++|..+
T Consensus        72 ql~~N~v   78 (284)
T KOG4642|consen   72 QLDPNLV   78 (284)
T ss_pred             hcChHHH
Confidence            9999653

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=2.4e-08  Score=95.27  Aligned_cols=75  Identities=27%  Similarity=0.337  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHH
Q 015659          314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV  393 (403)
Q Consensus       314 ~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~a  393 (403)
                      ........|.+||.+||+|+|..|..+|+.||.+=.. +          ...+.+||.|+|++.+++++..+||.+|+.|
T Consensus       245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~-n----------~~~naklY~nra~v~~rLgrl~eaisdc~~A  313 (486)
T KOG0550|consen  245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS-N----------KKTNAKLYGNRALVNIRLGRLREAISDCNEA  313 (486)
T ss_pred             hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc-c----------cchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence            3567788899999999999999999999999996222 1          4567889999999999999999999999999


Q ss_pred             Hhcccc
Q 015659          394 IVEREA  399 (403)
Q Consensus       394 L~~dp~  399 (403)
                      |.+||.
T Consensus       314 l~iD~s  319 (486)
T KOG0550|consen  314 LKIDSS  319 (486)
T ss_pred             hhcCHH
Confidence            999874

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=6.5e-08  Score=96.19  Aligned_cols=93  Identities=24%  Similarity=0.416  Sum_probs=79.8

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCCCCCCCCCCCCCCCCC
Q 015659           62 PEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPN  141 (403)
Q Consensus        62 ~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~~~ayg~~~~~~ip~~  141 (403)
                      ++.||.|+|+|.++. ||..|.+..  .+.+.|.||+++++|||+.+|.||+.|++..|.+++|.++.-+..      +|
T Consensus       158 a~~gD~v~IDf~g~i-Dg~~fegg~--ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L------aG  228 (441)
T COG0544         158 AENGDRVTIDFEGSV-DGEEFEGGK--AENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL------AG  228 (441)
T ss_pred             cccCCEEEEEEEEEE-cCeeccCcc--ccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh------CC
Confidence            899999999999976 999888764  367999999999999999999999999999998899998877666      68


Q ss_pred             CeEEEEEEeccceeeeccCCCc
Q 015659          142 SVVQFEVELVSWITVVDLSKDG  163 (403)
Q Consensus       142 ~~l~~~v~l~~~~~~~dv~~d~  163 (403)
                      ....|.|.|..+....-..-|.
T Consensus       229 K~a~F~V~vkeVk~~elpEldD  250 (441)
T COG0544         229 KEATFKVKVKEVKKRELPELDD  250 (441)
T ss_pred             CceEEEEEEEEEeecCCCCCCH
Confidence            8889999999987654444333

>TIGR00115 tig trigger factor

Probab=98.56  E-value=2.4e-07  Score=92.47  Aligned_cols=89  Identities=24%  Similarity=0.387  Sum_probs=74.6

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCCCCCCCCCCCCCCCC
Q 015659           61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPP  140 (403)
Q Consensus        61 ~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~~~ayg~~~~~~ip~  140 (403)
                      .++.||.|.++|+++. +|+.++++.  ..++.|.+|.+.+++||+++|.||++|+++.|  .++.-..|+....    +
T Consensus       146 ~~~~gD~V~v~~~~~~-dg~~~~~~~--~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~--~v~~p~~~~~~~~----~  216 (408)
T TIGR00115       146 AAEKGDRVTIDFEGFI-DGEAFEGGK--AENFSLELGSGQFIPGFEEQLVGMKAGEEKEI--KVTFPEDYHAEEL----A  216 (408)
T ss_pred             ccCCCCEEEEEEEEEE-CCEECcCCC--CCCeEEEECCCCcchhHHHHhCCCCCCCeeEE--EecCccccCcccC----C
Confidence            5788999999999987 899998874  37999999999999999999999999999999  6655455655442    6


Q ss_pred             CCeEEEEEEeccceeeec
Q 015659          141 NSVVQFEVELVSWITVVD  158 (403)
Q Consensus       141 ~~~l~~~v~l~~~~~~~d  158 (403)
                      |.+..|.|++.++....-
T Consensus       217 gk~~~f~v~i~~I~~~~~  234 (408)
T TIGR00115       217 GKEATFKVTVKEVKEKEL  234 (408)
T ss_pred             CCeEEEEEEEEEeccCCC
Confidence            889999999999875443

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

>PRK01490 tig trigger factor; Provisional

Probab=98.54  E-value=2.9e-07  Score=92.64  Aligned_cols=88  Identities=26%  Similarity=0.506  Sum_probs=72.8

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCCCCCCCCCCCCCCCC
Q 015659           61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPP  140 (403)
Q Consensus        61 ~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~~~ayg~~~~~~ip~  140 (403)
                      .++.||.|+++|+++. +|..++++.  ..++.|.+|.+.+++||+++|.||++|+++.|.+.+|.++  +...    -+
T Consensus       157 ~~~~gD~V~vd~~~~~-~g~~~~~~~--~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~--~~~~----la  227 (435)
T PRK01490        157 PAENGDRVTIDFVGSI-DGEEFEGGK--AEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDY--HAED----LA  227 (435)
T ss_pred             cCCCCCEEEEEEEEEE-CCEECcCCC--CCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCcccc--cccc----CC
Confidence            4799999999999998 898888764  3689999999999999999999999999999955566544  3322    16


Q ss_pred             CCeEEEEEEeccceeee
Q 015659          141 NSVVQFEVELVSWITVV  157 (403)
Q Consensus       141 ~~~l~~~v~l~~~~~~~  157 (403)
                      |....|.|.+..+....
T Consensus       228 gk~~~f~v~v~~V~~~~  244 (435)
T PRK01490        228 GKEATFKVTVKEVKEKE  244 (435)
T ss_pred             CCeEEEEEEEEEeccCC
Confidence            78899999999987543

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.46  E-value=2.7e-07  Score=66.82  Aligned_cols=64  Identities=13%  Similarity=0.223  Sum_probs=56.0

Q ss_pred             HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      ..|..+++.|+|.+|+..|+++++.               .+....++.+++.|++++|+|.+|+..++++++.+|.|+
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~---------------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQ---------------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCC---------------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHH---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            4688999999999999999999997               233567999999999999999999999999999999874

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.32  E-value=2.6e-06  Score=63.96  Aligned_cols=73  Identities=23%  Similarity=0.286  Sum_probs=60.9

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      .+..+...|.-++..|+|++|+..|++|+++....+. +       .+....++.|+|.|+.+++++++|+..+.+||++
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~-------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-D-------HPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-H-------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-C-------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4566788999999999999999999999998544321 1       3445789999999999999999999999999987


Q ss_pred             c
Q 015659          397 R  397 (403)
Q Consensus       397 d  397 (403)
                      .
T Consensus        76 ~   76 (78)
T PF13424_consen   76 F   76 (78)
T ss_dssp             H
T ss_pred             h
Confidence            4

...

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.32  E-value=8.3e-07  Score=86.92  Aligned_cols=68  Identities=18%  Similarity=0.236  Sum_probs=47.0

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      +..++..|+.+|..++|..|+..|.+||.+-..               ...++.|+|.||+++++|.+|+.++++||+++
T Consensus         2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~---------------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~   66 (356)
T PLN03088          2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPN---------------NAELYADRAQANIKLGNFTEAVADANKAIELD   66 (356)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            346788999999999999999999999996321               12355555555555555555555555555555


Q ss_pred             ccc
Q 015659          398 EAA  400 (403)
Q Consensus       398 p~~  400 (403)
                      |.+
T Consensus        67 P~~   69 (356)
T PLN03088         67 PSL   69 (356)
T ss_pred             cCC
Confidence            544

>TIGR00115 tig trigger factor

Probab=98.23  E-value=1.8e-05  Score=79.11  Aligned_cols=79  Identities=15%  Similarity=0.260  Sum_probs=65.1

Q ss_pred             eEEEEeeccceEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEE
Q 015659          214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYY  293 (403)
Q Consensus       214 v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f  293 (403)
                      ++|++.. +|..|+++   ...++.|.+|.+.+++||+.+|.+|++|++..|.++....|+....        +|.++.|
T Consensus       155 v~~~~~~-dg~~~~~~---~~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~--------~gk~~~f  222 (408)
T TIGR00115       155 IDFEGFI-DGEAFEGG---KAENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL--------AGKEATF  222 (408)
T ss_pred             EEEEEEE-CCEECcCC---CCCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC--------CCCeEEE
Confidence            4566644 67777765   3578999999999999999999999999999999997777876433        5789999


Q ss_pred             EEEEeeeccCc
Q 015659          294 EVEMMDFIKEK  304 (403)
Q Consensus       294 ~iel~~i~~~~  304 (403)
                      .|+|.+|....
T Consensus       223 ~v~i~~I~~~~  233 (408)
T TIGR00115       223 KVTVKEVKEKE  233 (408)
T ss_pred             EEEEEEeccCC
Confidence            99999998643

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=9.4e-07  Score=87.08  Aligned_cols=67  Identities=24%  Similarity=0.271  Sum_probs=58.3

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      +..+|+.||.+|..|+|..|+..|+.||.+               .+-+..+|+|+++||.++++|.+|+.+.++..+++
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l---------------~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~   66 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIML---------------SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN   66 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHcc---------------CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            567899999999999999999999999997               22245689999999999999999999999888888


Q ss_pred             cc
Q 015659          398 EA  399 (403)
Q Consensus       398 p~  399 (403)
                      |.
T Consensus        67 p~   68 (539)
T KOG0548|consen   67 PD   68 (539)
T ss_pred             Cc
Confidence            75

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.20  E-value=5e-07  Score=88.26  Aligned_cols=70  Identities=24%  Similarity=0.243  Sum_probs=64.2

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      .+..+|.++|++|+...|..|+..|.|||++               ++..+.++.|+|++++|.++|..|+++|.+|+++
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~l---------------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~   67 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIEL---------------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL   67 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhc---------------CCcceeeechhhhhheeechhhhHHHHHHhhhhc
Confidence            5678999999999999999999999999997               4445679999999999999999999999999999


Q ss_pred             ccccC
Q 015659          397 REAAR  401 (403)
Q Consensus       397 dp~~~  401 (403)
                      ||..+
T Consensus        68 dP~~~   72 (476)
T KOG0376|consen   68 DPTYI   72 (476)
T ss_pred             Cchhh
Confidence            99764

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.12  E-value=2.9e-06  Score=61.84  Aligned_cols=59  Identities=27%  Similarity=0.324  Sum_probs=50.9

Q ss_pred             hhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       328 ~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      +++.|+|.+|++.|++++..-               +....++.++|.|++++|++++|...+.+++..+|.+.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~---------------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~   59 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRN---------------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP   59 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHT---------------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred             ChhccCHHHHHHHHHHHHHHC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence            578999999999999999972               22356888999999999999999999999999999863

...

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.07  E-value=5.1e-06  Score=51.72  Aligned_cols=33  Identities=18%  Similarity=0.350  Sum_probs=30.2

Q ss_pred             HhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          368 SCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       368 ~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      .+++|+|.||+++++|.+|+.+|++||+++|.|
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            478999999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK01490 tig trigger factor; Provisional

Probab=98.07  E-value=5.8e-05  Score=76.09  Aligned_cols=78  Identities=13%  Similarity=0.288  Sum_probs=63.5

Q ss_pred             eEEEEeeccceEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEE
Q 015659          214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYY  293 (403)
Q Consensus       214 v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f  293 (403)
                      ++|+|.. +|..|+.+   ...++.|.+|.+.++|||+.+|.+|++|++..|.++....|+....        +|.+..|
T Consensus       166 vd~~~~~-~g~~~~~~---~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l--------agk~~~f  233 (435)
T PRK01490        166 IDFVGSI-DGEEFEGG---KAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL--------AGKEATF  233 (435)
T ss_pred             EEEEEEE-CCEECcCC---CCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC--------CCCeEEE
Confidence            4566665 66777655   3568999999999999999999999999999999887767765332        5789999


Q ss_pred             EEEEeeeccC
Q 015659          294 EVEMMDFIKE  303 (403)
Q Consensus       294 ~iel~~i~~~  303 (403)
                      .|+|.+|...
T Consensus       234 ~v~v~~V~~~  243 (435)
T PRK01490        234 KVTVKEVKEK  243 (435)
T ss_pred             EEEEEEeccC
Confidence            9999999864

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.06  E-value=1e-05  Score=59.79  Aligned_cols=61  Identities=20%  Similarity=0.349  Sum_probs=54.5

Q ss_pred             hHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          326 NLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       326 n~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      +-++++++|+.|+..+++++.+               .+....++.++|.|+.++++|.+|+.+++++|+.+|.+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~---------------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~   63 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALEL---------------DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP   63 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHh---------------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence            5678999999999999999998               233456899999999999999999999999999999764

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.02  E-value=8.6e-06  Score=69.12  Aligned_cols=35  Identities=14%  Similarity=-0.009  Sum_probs=27.4

Q ss_pred             HHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          367 VSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       367 ~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      ...++|++.|+.++|++.+|+..+.+||+++|.++
T Consensus        92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~  126 (144)
T PRK15359         92 PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADA  126 (144)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence            34678888888888888888888888888888764

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=1.9e-06  Score=81.20  Aligned_cols=91  Identities=29%  Similarity=0.307  Sum_probs=75.9

Q ss_pred             chHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCCh---HH-HHHHHHHHHHhhhHHHHHHHHccCHHHH
Q 015659          311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVD---DE-QKLVKSLRVSCWLNSAACCLKLKDYQGA  386 (403)
Q Consensus       311 ~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~---~~-~~~~~~~~~~~~~N~a~c~lkl~~~~~a  386 (403)
                      ....+..+..+|+.||..|+.++|..|..+|.++++++...+...+   ++ +..++.++..++.|+|+|-+|++.|..|
T Consensus       215 ~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a  294 (372)
T KOG0546|consen  215 FDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGA  294 (372)
T ss_pred             cchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcc
Confidence            4456788899999999999999999999999999999985222221   22 3457888899999999999999999999


Q ss_pred             HHHHHHHHhcccccC
Q 015659          387 IELCSKVIVEREAAR  401 (403)
Q Consensus       387 i~~~~~aL~~dp~~~  401 (403)
                      +..|..+|+.++.+.
T Consensus       295 ~~~~~~~~~~~~s~t  309 (372)
T KOG0546|consen  295 RFRTNEALRDERSKT  309 (372)
T ss_pred             eeccccccccChhhC
Confidence            999999999887654

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.98  E-value=1.6e-06  Score=81.27  Aligned_cols=78  Identities=19%  Similarity=0.244  Sum_probs=70.7

Q ss_pred             CchHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHH
Q 015659          310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIEL  389 (403)
Q Consensus       310 ~~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~  389 (403)
                      .++|.++++...|-.+-++|..|++..|+..|.+||.+               .+-...+|.++|.+++|++.|..||++
T Consensus       106 ~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~l---------------np~~a~l~~kr~sv~lkl~kp~~airD  170 (377)
T KOG1308|consen  106 ITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIEL---------------NPPLAILYAKRASVFLKLKKPNAAIRD  170 (377)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCcchhhhhccccccccc---------------CCchhhhcccccceeeeccCCchhhhh
Confidence            46788999999999999999999999999999999997               333467999999999999999999999


Q ss_pred             HHHHHhcccccCC
Q 015659          390 CSKVIVEREAARG  402 (403)
Q Consensus       390 ~~~aL~~dp~~~~  402 (403)
                      |..||+++|..|.
T Consensus       171 ~d~A~ein~Dsa~  183 (377)
T KOG1308|consen  171 CDFAIEINPDSAK  183 (377)
T ss_pred             hhhhhccCccccc
Confidence            9999999998763

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.89  E-value=5.4e-05  Score=64.32  Aligned_cols=69  Identities=13%  Similarity=0.208  Sum_probs=61.5

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      .+.+-..|..+|..|+|+.|.+.|+-.+.+               ++.....+.|+++|+-.+|+|.+||..+.+|+.++
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~---------------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~   99 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIY---------------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK   99 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            345667799999999999999999999987               55567799999999999999999999999999999


Q ss_pred             cccC
Q 015659          398 EAAR  401 (403)
Q Consensus       398 p~~~  401 (403)
                      |.++
T Consensus       100 ~ddp  103 (157)
T PRK15363        100 IDAP  103 (157)
T ss_pred             CCCc
Confidence            9775

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.88  E-value=2.8e-05  Score=65.95  Aligned_cols=67  Identities=16%  Similarity=0.241  Sum_probs=59.2

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      ....|..+++.|+|.+|+..|++++.+               .+.....+.|+|.|+.++++|.+|+..+.++++++|.+
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~---------------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~   91 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMA---------------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH   91 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc---------------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            345799999999999999999999986               23345689999999999999999999999999999988


Q ss_pred             CC
Q 015659          401 RG  402 (403)
Q Consensus       401 ~~  402 (403)
                      +.
T Consensus        92 ~~   93 (144)
T PRK15359         92 PE   93 (144)
T ss_pred             cH
Confidence            64

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=7.1e-06  Score=73.63  Aligned_cols=81  Identities=23%  Similarity=0.295  Sum_probs=71.6

Q ss_pred             ecCCCeEEEEEEccCCCCC--CCCCCEEEEEEEEEEc--CCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEE
Q 015659           43 LGNSGIKKKLLKNGVDWDT--PEFGDEVTIHYVGTLL--DGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECA  118 (403)
Q Consensus        43 ~~~~g~~~~vl~~G~G~~~--~~~gd~V~v~y~~~~~--~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~  118 (403)
                      +.-.|++++|+..|+| +-  ...|..|.+||.....  .++++++|...|+|+.+++|.---++-|+..|..|+++|.+
T Consensus         7 l~~~gv~Kril~~G~g-~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~Eva   85 (329)
T KOG0545|consen    7 LNVEGVKKRILHGGTG-ELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVA   85 (329)
T ss_pred             ccchhhhHhhccCCCc-cCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHH
Confidence            4567999999999999 44  4679999999998877  46799999999999999999888899999999999999999


Q ss_pred             EEEEEcCC
Q 015659          119 VFTFTLPS  126 (403)
Q Consensus       119 ~v~~~vp~  126 (403)
                      .|  +|.-
T Consensus        86 qF--~~d~   91 (329)
T KOG0545|consen   86 QF--WCDT   91 (329)
T ss_pred             Hh--hhhh
Confidence            99  7754

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.77  E-value=5.2e-05  Score=74.56  Aligned_cols=69  Identities=16%  Similarity=0.222  Sum_probs=57.5

Q ss_pred             HHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIV  395 (403)
Q Consensus       316 ~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~  395 (403)
                      ..+....+.|+.+|+.|+|++|+..|++||.+-..+            .....+|+|+|.||.+++++++|+.+..+||+
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~------------aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNP------------DEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            356677788999999999999999999999972111            11124689999999999999999999999999


Q ss_pred             c
Q 015659          396 E  396 (403)
Q Consensus       396 ~  396 (403)
                      +
T Consensus       141 l  141 (453)
T PLN03098        141 D  141 (453)
T ss_pred             h
Confidence            7

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=0.0013  Score=65.72  Aligned_cols=72  Identities=17%  Similarity=0.245  Sum_probs=53.8

Q ss_pred             cceEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeec
Q 015659          222 DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (403)
Q Consensus       222 ~g~~fd~s~~~~~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~  301 (403)
                      ||..|...   ..+-+.|.||.+.+||||+.+|.||+.|+...|.+.-..-|.....        .|.+..|.|+|..|.
T Consensus       173 Dg~~fegg---~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L--------aGK~a~F~V~vkeVk  241 (441)
T COG0544         173 DGEEFEGG---KAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL--------AGKEATFKVKVKEVK  241 (441)
T ss_pred             cCeeccCc---cccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh--------CCCceEEEEEEEEEe
Confidence            45555543   4567899999999999999999999999998855543333433222        467899999999998


Q ss_pred             cCc
Q 015659          302 KEK  304 (403)
Q Consensus       302 ~~~  304 (403)
                      ...
T Consensus       242 ~~e  244 (441)
T COG0544         242 KRE  244 (441)
T ss_pred             ecC
Confidence            633

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=3.6e-05  Score=73.93  Aligned_cols=76  Identities=26%  Similarity=0.342  Sum_probs=68.4

Q ss_pred             CchHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHH
Q 015659          310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIEL  389 (403)
Q Consensus       310 ~~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~  389 (403)
                      ..++....++..+++||.+|+..+|..|+..|+.||+++..               ....|.|+|+|++-+++|.+|.-+
T Consensus        41 ~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd---------------~a~yy~nRAa~~m~~~~~~~a~~d  105 (486)
T KOG0550|consen   41 FSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPD---------------NASYYSNRAATLMMLGRFEEALGD  105 (486)
T ss_pred             ccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCcc---------------chhhhchhHHHHHHHHhHhhcccc
Confidence            35667889999999999999999999999999999998432               267999999999999999999999


Q ss_pred             HHHHHhccccc
Q 015659          390 CSKVIVEREAA  400 (403)
Q Consensus       390 ~~~aL~~dp~~  400 (403)
                      +.+.++++|+-
T Consensus       106 ar~~~r~kd~~  116 (486)
T KOG0550|consen  106 ARQSVRLKDGF  116 (486)
T ss_pred             hhhheecCCCc
Confidence            99999999874

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.66  E-value=7.9e-05  Score=46.06  Aligned_cols=33  Identities=21%  Similarity=0.369  Sum_probs=30.0

Q ss_pred             HhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          368 SCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       368 ~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      ..+.++|.|++++++|++|+.+++++|+++|.|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            467899999999999999999999999999976

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.60  E-value=0.00013  Score=60.51  Aligned_cols=82  Identities=16%  Similarity=0.177  Sum_probs=49.6

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCC---------hHHHH----------HHHHHHHHhhhHHHHHHHHc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFV---------DDEQK----------LVKSLRVSCWLNSAACCLKL  380 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~---------~~~~~----------~~~~~~~~~~~N~a~c~lkl  380 (403)
                      .....|..+++.++|.+|...|++++..-.......         ..+..          .+.+.....+.|+|.|++++
T Consensus        19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~   98 (135)
T TIGR02552        19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL   98 (135)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence            355667777777788888877777777521110000         00000          01122345677788888888


Q ss_pred             cCHHHHHHHHHHHHhcccccC
Q 015659          381 KDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       381 ~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      +++++|+...+++++++|.+.
T Consensus        99 g~~~~A~~~~~~al~~~p~~~  119 (135)
T TIGR02552        99 GEPESALKALDLAIEICGENP  119 (135)
T ss_pred             CCHHHHHHHHHHHHHhccccc
Confidence            888888888888888877664

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.58  E-value=0.00015  Score=71.04  Aligned_cols=69  Identities=20%  Similarity=0.237  Sum_probs=60.2

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp  398 (403)
                      ..+..+|..+++.|+|..|+..|++|+.+               .+....+|++++.|++++++|.+|+..++++|+++|
T Consensus        37 ~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---------------~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P  101 (356)
T PLN03088         37 ELYADRAQANIKLGNFTEAVADANKAIEL---------------DPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAP  101 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence            34567889999999999999999999997               223356899999999999999999999999999999


Q ss_pred             ccCC
Q 015659          399 AARG  402 (403)
Q Consensus       399 ~~~~  402 (403)
                      .+..
T Consensus       102 ~~~~  105 (356)
T PLN03088        102 GDSR  105 (356)
T ss_pred             CCHH
Confidence            8753

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.52  E-value=0.00047  Score=60.17  Aligned_cols=76  Identities=16%  Similarity=0.101  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHH
Q 015659          314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV  393 (403)
Q Consensus       314 ~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~a  393 (403)
                      +...+..+...|..++..|+|++|+..|++++.......            ....++.|+|.|+.++++|.+|+..+.++
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a   98 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN------------DRSYILYNMGIIYASNGEHDKALEYYHQA   98 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            445666778889999999999999999999998632110            12458899999999999999999999999


Q ss_pred             HhcccccC
Q 015659          394 IVEREAAR  401 (403)
Q Consensus       394 L~~dp~~~  401 (403)
                      ++++|.+.
T Consensus        99 l~~~p~~~  106 (172)
T PRK02603         99 LELNPKQP  106 (172)
T ss_pred             HHhCcccH
Confidence            99998763

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.51  E-value=0.0005  Score=59.69  Aligned_cols=75  Identities=15%  Similarity=0.033  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHH
Q 015659          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI  394 (403)
Q Consensus       315 ~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL  394 (403)
                      ...+..+-..|..++..++|..|+..|++|+.+....            .....++.|+|.|+.+++++++|+..+.+||
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~------------~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al   99 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP------------YDRSYILYNIGLIHTSNGEHTKALEYYFQAL   99 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3466677778999999999999999999999973210            1123488999999999999999999999999


Q ss_pred             hcccccC
Q 015659          395 VEREAAR  401 (403)
Q Consensus       395 ~~dp~~~  401 (403)
                      .++|.+.
T Consensus       100 ~~~~~~~  106 (168)
T CHL00033        100 ERNPFLP  106 (168)
T ss_pred             HhCcCcH
Confidence            9988753

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.47  E-value=0.00024  Score=58.94  Aligned_cols=27  Identities=22%  Similarity=-0.006  Sum_probs=21.2

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADC  347 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~  347 (403)
                      ....|..+++.++|..|+..|++++..
T Consensus        54 ~~~la~~~~~~~~~~~A~~~~~~~~~~   80 (135)
T TIGR02552        54 WLGLAACCQMLKEYEEAIDAYALAAAL   80 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            445677778888888888888888875

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK11189 lipoprotein NlpI; Provisional

Probab=97.36  E-value=0.00041  Score=66.26  Aligned_cols=66  Identities=12%  Similarity=0.086  Sum_probs=45.9

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      ....|..+...|+|..|+..|.+|+++               .+-....+.|++.++...++|++|+.+++++++++|.+
T Consensus       101 ~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~  165 (296)
T PRK11189        101 YNYLGIYLTQAGNFDAAYEAFDSVLEL---------------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND  165 (296)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            344555555556666666666666554               22234578889999999999999999999999888876


Q ss_pred             C
Q 015659          401 R  401 (403)
Q Consensus       401 ~  401 (403)
                      +
T Consensus       166 ~  166 (296)
T PRK11189        166 P  166 (296)
T ss_pred             H
Confidence            3

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.34  E-value=0.00087  Score=62.02  Aligned_cols=71  Identities=10%  Similarity=0.018  Sum_probs=60.1

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      ..-..|..+|++|+|.+|+..|++++.....            .+......+++|.||+++++|.+|+..+++.++++|.
T Consensus        34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~------------s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~  101 (243)
T PRK10866         34 EIYATAQQKLQDGNWKQAITQLEALDNRYPF------------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT  101 (243)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence            3556788899999999999999999996433            2234456889999999999999999999999999999


Q ss_pred             cCC
Q 015659          400 ARG  402 (403)
Q Consensus       400 ~~~  402 (403)
                      +..
T Consensus       102 ~~~  104 (243)
T PRK10866        102 HPN  104 (243)
T ss_pred             CCc
Confidence            875

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=97.32  E-value=0.00029  Score=69.71  Aligned_cols=74  Identities=22%  Similarity=0.104  Sum_probs=65.6

Q ss_pred             hHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc---CHHHHHH
Q 015659          312 QGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK---DYQGAIE  388 (403)
Q Consensus       312 ~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~---~~~~ai~  388 (403)
                      -|..+.++..|..||+.|-++....|+..|.+++.+               -+...-||.|+|++++|.+   +.-.|+.
T Consensus       368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~---------------~~~~~~~l~nraa~lmkRkW~~d~~~Alr  432 (758)
T KOG1310|consen  368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQY---------------VPDAIYLLENRAAALMKRKWRGDSYLALR  432 (758)
T ss_pred             hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhh---------------ccchhHHHHhHHHHHHhhhccccHHHHHH
Confidence            456788999999999999999999999999999998               4455779999999999976   6788999


Q ss_pred             HHHHHHhccccc
Q 015659          389 LCSKVIVEREAA  400 (403)
Q Consensus       389 ~~~~aL~~dp~~  400 (403)
                      +|..||++||+-
T Consensus       433 Dch~Alrln~s~  444 (758)
T KOG1310|consen  433 DCHVALRLNPSI  444 (758)
T ss_pred             hHHhhccCChHH
Confidence            999999999863

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.28  E-value=0.00094  Score=53.61  Aligned_cols=34  Identities=18%  Similarity=0.115  Sum_probs=24.2

Q ss_pred             HhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          368 SCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       368 ~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      .++.+++.|+.+++++.+|+...+++++..|.+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  110 (119)
T TIGR02795        77 DALLKLGMSLQELGDKEKAKATLQQVIKRYPGSS  110 (119)
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence            4567777777777777777777777777777653

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.27  E-value=0.00064  Score=50.81  Aligned_cols=65  Identities=29%  Similarity=0.396  Sum_probs=41.9

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      +...|..++..++|.+|+..++++++.....               ..++.++|.|+...+++.+|+..+++++...|.+
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   67 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDN---------------ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN   67 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            3456777788888888888888887752211               1355666666666666666666666666665543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.27  E-value=0.0012  Score=54.00  Aligned_cols=72  Identities=18%  Similarity=0.122  Sum_probs=63.9

Q ss_pred             chHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHH
Q 015659          311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELC  390 (403)
Q Consensus       311 ~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~  390 (403)
                      ....++....+.-+|-.+-..|+...|+.+|.+||.++               +.+.+.|+|+|+++--.++..+|+.+.
T Consensus        36 ~~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~---------------P~raSayNNRAQa~RLq~~~e~ALdDL  100 (175)
T KOG4555|consen   36 DTQAIKASRELELKAIALAEAGDLDGALELFGQALCLA---------------PERASAYNNRAQALRLQGDDEEALDDL  100 (175)
T ss_pred             chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhc---------------ccchHhhccHHHHHHHcCChHHHHHHH
Confidence            34467888888889999999999999999999999984               345689999999999999999999999


Q ss_pred             HHHHhcc
Q 015659          391 SKVIVER  397 (403)
Q Consensus       391 ~~aL~~d  397 (403)
                      ++||++.
T Consensus       101 n~AleLa  107 (175)
T KOG4555|consen  101 NKALELA  107 (175)
T ss_pred             HHHHHhc
Confidence            9999984

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.27  E-value=0.00036  Score=48.10  Aligned_cols=33  Identities=24%  Similarity=0.393  Sum_probs=29.2

Q ss_pred             hhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          369 CWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       369 ~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      |++.+|..+.|+++|..|..+|+.+|+++|.|.
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~   35 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR   35 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence            667899999999999999999999999999984

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.25  E-value=0.0013  Score=60.20  Aligned_cols=74  Identities=20%  Similarity=0.168  Sum_probs=62.0

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      .+..+...|..+++.|+|..|+..|++++......            +.....++++|.|++++++|.+|+..++++++.
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~------------~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~   99 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS------------PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL   99 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------------hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            45567788999999999999999999998863321            123457899999999999999999999999999


Q ss_pred             ccccCC
Q 015659          397 REAARG  402 (403)
Q Consensus       397 dp~~~~  402 (403)
                      +|.+..
T Consensus       100 ~p~~~~  105 (235)
T TIGR03302       100 HPNHPD  105 (235)
T ss_pred             CcCCCc
Confidence            998764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.23  E-value=0.00063  Score=63.20  Aligned_cols=64  Identities=22%  Similarity=0.205  Sum_probs=59.4

Q ss_pred             HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      .++-.+-+.|.|..|++--++||.+               ++...++|..|..+|+-+++|.+|+..+.+||++||.|+
T Consensus       120 NRAAAy~~Lg~~~~AVkDce~Al~i---------------Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne  183 (304)
T KOG0553|consen  120 NRAAAYSKLGEYEDAVKDCESALSI---------------DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE  183 (304)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhc---------------ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence            6677788899999999999999998               778899999999999999999999999999999999986

>PRK11189 lipoprotein NlpI; Provisional

Probab=97.23  E-value=0.00073  Score=64.51  Aligned_cols=69  Identities=14%  Similarity=0.082  Sum_probs=60.2

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      +.-.-..|..+.+.|++..|+..|++|+.+               .+-...+++|++.++.++++|++|+..++++|+++
T Consensus        64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l---------------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~  128 (296)
T PRK11189         64 AQLHYERGVLYDSLGLRALARNDFSQALAL---------------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD  128 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            444667899999999999999999999997               22234689999999999999999999999999999


Q ss_pred             cccC
Q 015659          398 EAAR  401 (403)
Q Consensus       398 p~~~  401 (403)
                      |.++
T Consensus       129 P~~~  132 (296)
T PRK11189        129 PTYN  132 (296)
T ss_pred             CCCH
Confidence            9875

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.19  E-value=0.00058  Score=68.92  Aligned_cols=40  Identities=10%  Similarity=-0.044  Sum_probs=34.9

Q ss_pred             HHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccCC
Q 015659          363 KSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAARG  402 (403)
Q Consensus       363 ~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~~  402 (403)
                      -+.....++|+|..|-+++++++|+.++.+||+++|.-|+
T Consensus       384 ~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd  423 (966)
T KOG4626|consen  384 FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD  423 (966)
T ss_pred             ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH
Confidence            4556678999999999999999999999999999997654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.17  E-value=0.0016  Score=58.46  Aligned_cols=75  Identities=23%  Similarity=0.146  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHH
Q 015659          314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV  393 (403)
Q Consensus       314 ~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~a  393 (403)
                      .-..+...-+.|-.++..|++..|....++||+.               ++-....++=||..|.++|+.+.|-+.+++|
T Consensus        31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~---------------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkA   95 (250)
T COG3063          31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH---------------DPSYYLAHLVRAHYYQKLGENDLADESYRKA   95 (250)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------CcccHHHHHHHHHHHHHcCChhhHHHHHHHH
Confidence            3456667778999999999999999999999997               3444568888999999999999999999999


Q ss_pred             HhcccccCCC
Q 015659          394 IVEREAARGV  403 (403)
Q Consensus       394 L~~dp~~~~~  403 (403)
                      |.++|.|.+|
T Consensus        96 lsl~p~~GdV  105 (250)
T COG3063          96 LSLAPNNGDV  105 (250)
T ss_pred             HhcCCCccch
Confidence            9999999876

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.10  E-value=0.0013  Score=50.02  Aligned_cols=57  Identities=28%  Similarity=0.314  Sum_probs=43.7

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHH
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV  393 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~a  393 (403)
                      +-..|.-+|+.|+|.+|+..+++ +..               .+-...++.-+|.|++++++|++|+....+|
T Consensus        28 ~~~la~~~~~~~~y~~A~~~~~~-~~~---------------~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   28 LYNLAQCYFQQGKYEEAIELLQK-LKL---------------DPSNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHC-HTH---------------HHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHH-hCC---------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            33469999999999999999988 443               2223445556799999999999999988775

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.09  E-value=0.0012  Score=59.18  Aligned_cols=71  Identities=17%  Similarity=0.184  Sum_probs=57.9

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      .+.+.+-|.-+...|+|++|...+++|+.-=.+..             ....+.|+..|.+|.|+++.|.++.+++|++|
T Consensus       103 GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~-------------~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d  169 (250)
T COG3063         103 GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGE-------------PSDTLENLGLCALKAGQFDQAEEYLKRALELD  169 (250)
T ss_pred             cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCC-------------cchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence            34466778888888999999999999888422221             13478999999999999999999999999999


Q ss_pred             cccC
Q 015659          398 EAAR  401 (403)
Q Consensus       398 p~~~  401 (403)
                      |.+.
T Consensus       170 p~~~  173 (250)
T COG3063         170 PQFP  173 (250)
T ss_pred             cCCC
Confidence            9875

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.05  E-value=0.001  Score=50.54  Aligned_cols=56  Identities=29%  Similarity=0.405  Sum_probs=45.5

Q ss_pred             cCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          331 NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       331 ~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      .++|+.|+..|.+++..-...            . ....++++|.|++++++|.+|+..+++ +..+|.+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~------------~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~   57 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTN------------P-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN   57 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGT------------H-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH
T ss_pred             CccHHHHHHHHHHHHHHCCCC------------h-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC
Confidence            589999999999999974321            1 345778899999999999999999999 8777765

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.03  E-value=0.002  Score=51.72  Aligned_cols=70  Identities=11%  Similarity=0.106  Sum_probs=58.4

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp  398 (403)
                      ..+-..|..+++.|+|.+|+..|.+++......            .....++.+++.|+++.++|..|+..+.+++..+|
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p   70 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS------------TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP   70 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc------------cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence            345678999999999999999999999863221            12234788999999999999999999999999998


Q ss_pred             cc
Q 015659          399 AA  400 (403)
Q Consensus       399 ~~  400 (403)
                      .+
T Consensus        71 ~~   72 (119)
T TIGR02795        71 KS   72 (119)
T ss_pred             CC
Confidence            75

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.03  E-value=0.0024  Score=64.87  Aligned_cols=75  Identities=19%  Similarity=0.081  Sum_probs=65.2

Q ss_pred             HHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIV  395 (403)
Q Consensus       316 ~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~  395 (403)
                      ..+..++..|+-+-..++|.+|+..|++|+.+++...+.+       ++.....+.|||..|.+.++|.+|..+|++|++
T Consensus       239 ~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~-------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~  311 (508)
T KOG1840|consen  239 VVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED-------HPAVAATLNNLAVLYYKQGKFAEAEEYCERALE  311 (508)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH
Confidence            3455566789999999999999999999999998765555       666788999999999999999999999999998


Q ss_pred             cc
Q 015659          396 ER  397 (403)
Q Consensus       396 ~d  397 (403)
                      +-
T Consensus       312 I~  313 (508)
T KOG1840|consen  312 IY  313 (508)
T ss_pred             HH
Confidence            63

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.00  E-value=0.0032  Score=52.67  Aligned_cols=73  Identities=21%  Similarity=0.185  Sum_probs=59.6

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp  398 (403)
                      ..+-..|-+.+++|+|..|+..++....-....            +......++++-+|+|.++|..|+...++-++++|
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g------------~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP   78 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFG------------EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP   78 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC------------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            455667888999999999999887766654432            22345789999999999999999999999999999


Q ss_pred             ccCCC
Q 015659          399 AARGV  403 (403)
Q Consensus       399 ~~~~~  403 (403)
                      .+..+
T Consensus        79 ~hp~v   83 (142)
T PF13512_consen   79 THPNV   83 (142)
T ss_pred             CCCCc
Confidence            98754

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.94  E-value=0.0013  Score=40.46  Aligned_cols=33  Identities=21%  Similarity=0.292  Sum_probs=30.0

Q ss_pred             HhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          368 SCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       368 ~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      .++.++|.||.+++++++|+.+.+++++++|.|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            468899999999999999999999999999943

...

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.94  E-value=0.0022  Score=56.33  Aligned_cols=69  Identities=20%  Similarity=0.191  Sum_probs=60.4

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      +--+-.+|-.+.|.++++.|+.-.+|||.+               .+.+.+++..||-+|-|+..|+.|+.++.++|++|
T Consensus       134 sIly~Nraaa~iKl~k~e~aI~dcsKaiel---------------~pty~kAl~RRAeayek~ek~eealeDyKki~E~d  198 (271)
T KOG4234|consen  134 SILYSNRAAALIKLRKWESAIEDCSKAIEL---------------NPTYEKALERRAEAYEKMEKYEEALEDYKKILESD  198 (271)
T ss_pred             HHHHhhhHHHHHHhhhHHHHHHHHHhhHhc---------------CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence            334556788889999999999999999998               55567788899999999999999999999999999


Q ss_pred             cccC
Q 015659          398 EAAR  401 (403)
Q Consensus       398 p~~~  401 (403)
                      |++.
T Consensus       199 Ps~~  202 (271)
T KOG4234|consen  199 PSRR  202 (271)
T ss_pred             cchH
Confidence            9864

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=96.91  E-value=0.0023  Score=57.27  Aligned_cols=84  Identities=20%  Similarity=0.205  Sum_probs=61.8

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc--------------C-CCC-ChHH------HHHHHHHHHHhhhHHHH
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE--------------D-GSF-VDDE------QKLVKSLRVSCWLNSAA  375 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~--------------~-~~~-~~~~------~~~~~~~~~~~~~N~a~  375 (403)
                      +......|.-+...|+|..|+..|++|+++-..              . ... .++-      ..+.++-....++|+|.
T Consensus        73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~  152 (198)
T PRK10370         73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLAS  152 (198)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence            455667788888899999999999998885421              0 010 1111      12234445679999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhcccccC
Q 015659          376 CCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       376 c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      +++++++|++|+.+++++|+++|.+.
T Consensus       153 ~~~~~g~~~~Ai~~~~~aL~l~~~~~  178 (198)
T PRK10370        153 DAFMQADYAQAIELWQKVLDLNSPRV  178 (198)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            99999999999999999999999864

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.84  E-value=0.00045  Score=67.21  Aligned_cols=67  Identities=25%  Similarity=0.341  Sum_probs=60.8

Q ss_pred             HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      ..||-+|+..+|.+|++.|+.||+.+.+..          +.+++++++|+...+++.|.|++||..++..++..|.
T Consensus       242 nigni~~kkr~fskaikfyrmaldqvpsin----------k~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn  308 (840)
T KOG2003|consen  242 NIGNIHFKKREFSKAIKFYRMALDQVPSIN----------KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPN  308 (840)
T ss_pred             eecceeeehhhHHHHHHHHHHHHhhccccc----------hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCcc
Confidence            569999999999999999999999866543          7889999999999999999999999999998888774

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.80  E-value=0.0046  Score=55.57  Aligned_cols=72  Identities=22%  Similarity=0.179  Sum_probs=57.4

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      +..+-..|..+|..|+|.+|+..|++.+......+            ....+.+++|.|+++.++|..|+..+++.++..
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~------------~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y   72 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP------------YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY   72 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST------------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            45677889999999999999999999998754422            234577899999999999999999999999999


Q ss_pred             cccC
Q 015659          398 EAAR  401 (403)
Q Consensus       398 p~~~  401 (403)
                      |.+.
T Consensus        73 P~~~   76 (203)
T PF13525_consen   73 PNSP   76 (203)
T ss_dssp             TT-T
T ss_pred             CCCc
Confidence            9875

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.80  E-value=0.0014  Score=55.74  Aligned_cols=60  Identities=18%  Similarity=0.121  Sum_probs=48.0

Q ss_pred             HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      ..|-.+=..|+|++|+..|.+|+.+-..               ....+.|++.|++++|+...|+...+.|+..-
T Consensus        74 gLG~~~Q~~g~~~~AI~aY~~A~~L~~d---------------dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363         74 RLGECCQAQKHWGEAIYAYGRAAQIKID---------------APQAPWAAAECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcCCC---------------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            3344444678999999999999997222               23588999999999999999999999888764

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=96.79  E-value=0.0026  Score=70.10  Aligned_cols=85  Identities=8%  Similarity=-0.020  Sum_probs=56.3

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCC-------------CCChHHH------HHHHHHHHHhhhHHHHHHHH
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-------------SFVDDEQ------KLVKSLRVSCWLNSAACCLK  379 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-------------~~~~~~~------~~~~~~~~~~~~N~a~c~lk  379 (403)
                      ......|..+.+.|++.+|+..|++|+..-....             +..++-.      .++.+-...++.|+|.|+.+
T Consensus       610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~  689 (987)
T PRK09782        610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR  689 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            3445566667777777777777777776421100             0000000      11233345688999999999


Q ss_pred             ccCHHHHHHHHHHHHhcccccCCC
Q 015659          380 LKDYQGAIELCSKVIVEREAARGV  403 (403)
Q Consensus       380 l~~~~~ai~~~~~aL~~dp~~~~~  403 (403)
                      +|++.+|+..+++||+++|.++.+
T Consensus       690 lGd~~eA~~~l~~Al~l~P~~a~i  713 (987)
T PRK09782        690 LDDMAATQHYARLVIDDIDNQALI  713 (987)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCchh
Confidence            999999999999999999988754

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.79  E-value=0.0046  Score=53.90  Aligned_cols=67  Identities=19%  Similarity=0.123  Sum_probs=55.6

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccC--------------HH
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD--------------YQ  384 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~--------------~~  384 (403)
                      ..+...|..+++.|+|+.|+..|.+|+...               +.....+.|++.|+.++++              +.
T Consensus        73 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~  137 (172)
T PRK02603         73 YILYNMGIIYASNGEHDKALEYYHQALELN---------------PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFD  137 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHH
Confidence            456778999999999999999999999972               2234567889999998887              68


Q ss_pred             HHHHHHHHHHhccccc
Q 015659          385 GAIELCSKVIVEREAA  400 (403)
Q Consensus       385 ~ai~~~~~aL~~dp~~  400 (403)
                      +|+...++++.++|.|
T Consensus       138 ~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        138 KAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHHHHhhCchh
Confidence            8888999999999876

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=96.77  E-value=0.0025  Score=60.32  Aligned_cols=85  Identities=14%  Similarity=0.128  Sum_probs=60.4

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc----------------CCCCChHHH---HHHHHHHHHhhhHHHHHH
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE----------------DGSFVDDEQ---KLVKSLRVSCWLNSAACC  377 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~----------------~~~~~~~~~---~~~~~~~~~~~~N~a~c~  377 (403)
                      .+++.-+.|+++|-+|+|..|+..|..|++.-..                ....--.+.   -++++-...+..-++.++
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl  116 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL  116 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence            4667778999999999999999999999884110                000000112   233445556777788888


Q ss_pred             HHccCHHHHHHHHHHHHhcccccC
Q 015659          378 LKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       378 lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      ||+|++++|..+.+++|.-+|+|.
T Consensus       117 lK~Gele~A~~DF~~vl~~~~s~~  140 (504)
T KOG0624|consen  117 LKQGELEQAEADFDQVLQHEPSNG  140 (504)
T ss_pred             hhcccHHHHHHHHHHHHhcCCCcc
Confidence            888888888888888888888764

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.77  E-value=0.0018  Score=40.73  Aligned_cols=30  Identities=20%  Similarity=0.199  Sum_probs=25.2

Q ss_pred             hhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659          369 CWLNSAACCLKLKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       369 ~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp  398 (403)
                      +++|||.+|.++++|++|+..+.++|.+..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~   30 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR   30 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            478999999999999999999999665543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.76  E-value=0.00086  Score=67.18  Aligned_cols=78  Identities=18%  Similarity=0.286  Sum_probs=59.5

Q ss_pred             HHhhHhhhcCcHHHHHHHHHHHHHHhccC-------------CCCChH------HHHHHHHHHHHhhhHHHHHHHHccCH
Q 015659          323 EEGNLLFKNGKYERAGKKYNKAADCVSED-------------GSFVDD------EQKLVKSLRVSCWLNSAACCLKLKDY  383 (403)
Q Consensus       323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~-------------~~~~~~------~~~~~~~~~~~~~~N~a~c~lkl~~~  383 (403)
                      ..|--++-.++|.+|+.+|+.||..=..+             ...+++      ....+++-.+...+|||.|++.+|.|
T Consensus       435 ~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~y  514 (579)
T KOG1125|consen  435 GLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAY  514 (579)
T ss_pred             hhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhH
Confidence            35777888999999999999998852111             111111      11345677788999999999999999


Q ss_pred             HHHHHHHHHHHhccccc
Q 015659          384 QGAIELCSKVIVEREAA  400 (403)
Q Consensus       384 ~~ai~~~~~aL~~dp~~  400 (403)
                      .+|+.+.-.||.+.+.+
T Consensus       515 kEA~~hlL~AL~mq~ks  531 (579)
T KOG1125|consen  515 KEAVKHLLEALSMQRKS  531 (579)
T ss_pred             HHHHHHHHHHHHhhhcc
Confidence            99999999999998874

>PRK12370 invasion protein regulator; Provisional

Probab=96.75  E-value=0.0033  Score=65.43  Aligned_cols=64  Identities=6%  Similarity=-0.033  Sum_probs=54.1

Q ss_pred             HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      ..|.-+...|+|++|+..|++|+++               .+.....++++|.+++.+|++++|+..++++++++|.+.
T Consensus       343 ~lg~~~~~~g~~~~A~~~~~~Al~l---------------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~  406 (553)
T PRK12370        343 LLGLINTIHSEYIVGSLLFKQANLL---------------SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA  406 (553)
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh
Confidence            4577778889999999999999887               222345789999999999999999999999999999864

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=96.74  E-value=0.0051  Score=54.88  Aligned_cols=68  Identities=16%  Similarity=0.144  Sum_probs=40.3

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      .+......|..+++.|+|.+|+..|+++++....               ...++.+++.+++.++++.+|+....+++++
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~   94 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD---------------DYLAYLALALYYQQLGELEKAEDSFRRALTL   94 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3455566788888888888888888888775211               1224444555555555555555555555555


Q ss_pred             ccc
Q 015659          397 REA  399 (403)
Q Consensus       397 dp~  399 (403)
                      +|.
T Consensus        95 ~~~   97 (234)
T TIGR02521        95 NPN   97 (234)
T ss_pred             CCC
Confidence            443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.73  E-value=0.0024  Score=64.59  Aligned_cols=70  Identities=19%  Similarity=0.177  Sum_probs=62.6

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      -++.+-..||-+=.+|+++.|+..|+.|+++               ++..+-.|.|+|+|+...++-..|...|.+||++
T Consensus       115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel---------------~p~fida~inla~al~~~~~~~~a~~~~~~alql  179 (966)
T KOG4626|consen  115 GAEAYSNLANILKERGQLQDALALYRAAIEL---------------KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL  179 (966)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHHhc---------------CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc
Confidence            4556667888888899999999999999997               6667889999999999999999999999999999


Q ss_pred             ccccC
Q 015659          397 REAAR  401 (403)
Q Consensus       397 dp~~~  401 (403)
                      +|.+.
T Consensus       180 nP~l~  184 (966)
T KOG4626|consen  180 NPDLY  184 (966)
T ss_pred             Ccchh
Confidence            99764

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=96.70  E-value=0.0097  Score=57.75  Aligned_cols=79  Identities=13%  Similarity=0.180  Sum_probs=62.3

Q ss_pred             HHHhhHhhhcCcHHHHHHHHHHHHHHhccCC---CCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDG---SFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       322 k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~---~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp  398 (403)
                      -..|...|+.++|..|+.+|+-||.++....   .........+-.+..-+..-++.|||++++.+-|+.+..+.+-++|
T Consensus       180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP  259 (569)
T PF15015_consen  180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP  259 (569)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence            3468899999999999999999999875421   1122233344555666778899999999999999999999999999


Q ss_pred             cc
Q 015659          399 AA  400 (403)
Q Consensus       399 ~~  400 (403)
                      ..
T Consensus       260 ~~  261 (569)
T PF15015_consen  260 SY  261 (569)
T ss_pred             ch
Confidence            74

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=96.68  E-value=0.0036  Score=66.02  Aligned_cols=81  Identities=17%  Similarity=0.164  Sum_probs=43.5

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCC-------------CCChHHHHH------HHHHHHHhhhHHHHHHHHc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-------------SFVDDEQKL------VKSLRVSCWLNSAACCLKL  380 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-------------~~~~~~~~~------~~~~~~~~~~N~a~c~lkl  380 (403)
                      .+...|.-+|..|+|.+|+..|++++.+-....             +..++-...      ..+....++++++.+++.+
T Consensus       401 ~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~  480 (615)
T TIGR00990       401 IYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQ  480 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence            344667778888888888888888877521100             000000000      1112233555566666666


Q ss_pred             cCHHHHHHHHHHHHhccccc
Q 015659          381 KDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       381 ~~~~~ai~~~~~aL~~dp~~  400 (403)
                      ++|.+|+..+++|++++|.+
T Consensus       481 g~~~~A~~~~~~Al~l~p~~  500 (615)
T TIGR00990       481 NKFDEAIEKFDTAIELEKET  500 (615)
T ss_pred             cCHHHHHHHHHHHHhcCCcc
Confidence            66666666666666665543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.66  E-value=0.0018  Score=60.07  Aligned_cols=64  Identities=27%  Similarity=0.337  Sum_probs=54.4

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      +..+.+.|--+||.|+|+.|+++|+.|+..--+               ..-+-+|+|+||++.+++.+|+++.++.++.
T Consensus       144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy---------------qpllAYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY---------------QPLLAYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             cchhccchheeeccccHHHHHHHHHHHHhhcCC---------------CchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            455667788899999999999999999997322               2357799999999999999999999998763

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.57  E-value=0.0043  Score=46.13  Aligned_cols=65  Identities=25%  Similarity=0.331  Sum_probs=54.6

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      .....|.-++..+++..|+..|++++......               ..++.+++.+++.++++.+|+..+.++++.+|.
T Consensus        36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDN---------------AKAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc---------------hhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            34567888888999999999999999863322               157889999999999999999999999998873

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=96.53  E-value=0.0064  Score=54.45  Aligned_cols=69  Identities=10%  Similarity=0.045  Sum_probs=37.2

Q ss_pred             hhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHH-HHccC--HHHHHHHHHHHHhcccccC
Q 015659          325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACC-LKLKD--YQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       325 Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~-lkl~~--~~~ai~~~~~aL~~dp~~~  401 (403)
                      ...++..|+...+...|..|+..+..-        ..+.+-...+++|+|.|+ ...++  +.+|+...+++|+++|.+.
T Consensus        73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~A--------l~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~  144 (198)
T PRK10370         73 SEQWALLGEYYLWRNDYDNALLAYRQA--------LQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEV  144 (198)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHH--------HHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCh
Confidence            444555555555555566665554321        111222344666666663 45555  3666666666666666653

>smart00028 TPR Tetratricopeptide repeats

Probab=96.53  E-value=0.0041  Score=36.54  Aligned_cols=33  Identities=27%  Similarity=0.336  Sum_probs=30.1

Q ss_pred             HhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          368 SCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       368 ~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      .++.|+|.|++.++++..|+....++++++|.+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            367899999999999999999999999998853

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.41  E-value=0.032  Score=47.01  Aligned_cols=84  Identities=18%  Similarity=0.171  Sum_probs=64.3

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCC-------CCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHH
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-------SFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELC  390 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-------~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~  390 (403)
                      ...+...|...-..++...++..|++|+.++....       .+-......++.....+...++.+++..++|..|+..|
T Consensus         6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~   85 (146)
T PF03704_consen    6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL   85 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            34444556667778899999999999999874421       33345557788999999999999999999999999999


Q ss_pred             HHHHhcccccC
Q 015659          391 SKVIVEREAAR  401 (403)
Q Consensus       391 ~~aL~~dp~~~  401 (403)
                      .++|.+||-|.
T Consensus        86 ~~~l~~dP~~E   96 (146)
T PF03704_consen   86 QRALALDPYDE   96 (146)
T ss_dssp             HHHHHHSTT-H
T ss_pred             HHHHhcCCCCH
Confidence            99999999874

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.35  E-value=0.02  Score=54.21  Aligned_cols=72  Identities=32%  Similarity=0.453  Sum_probs=55.9

Q ss_pred             HHHHHHHHHhhHhhhc-CcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHH
Q 015659          316 EAAGRKKEEGNLLFKN-GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI  394 (403)
Q Consensus       316 ~~~~~~k~~Gn~~fk~-~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL  394 (403)
                      ..+..+...|.-+-+. +++++|+..|++|+.++.....         ......++.|+|.++.++++|.+|+..++++.
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~---------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~  182 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS---------PHSAAECLLKAADLYARLGRYEEAIEIYEEVA  182 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC---------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3455666777777777 8999999999999999865431         34456799999999999999999999999987


Q ss_pred             hc
Q 015659          395 VE  396 (403)
Q Consensus       395 ~~  396 (403)
                      ..
T Consensus       183 ~~  184 (282)
T PF14938_consen  183 KK  184 (282)
T ss_dssp             HT
T ss_pred             HH
Confidence            64

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=96.33  E-value=0.0072  Score=55.20  Aligned_cols=68  Identities=16%  Similarity=0.149  Sum_probs=57.5

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      .++..|..+|.+|+|..|+...++|...-.               ..-.+++=+++||.++|++..|...+.++|++.|.
T Consensus       102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p---------------~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~  166 (257)
T COG5010         102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAP---------------TDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN  166 (257)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHhccCC---------------CChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC
Confidence            344589999999999999999999999621               12347788999999999999999999999999988


Q ss_pred             cCC
Q 015659          400 ARG  402 (403)
Q Consensus       400 ~~~  402 (403)
                      ++-
T Consensus       167 ~p~  169 (257)
T COG5010         167 EPS  169 (257)
T ss_pred             Cch
Confidence            753

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=96.33  E-value=0.0093  Score=56.50  Aligned_cols=68  Identities=21%  Similarity=0.174  Sum_probs=41.5

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      ++....-.=+-..|-+--+.=+-.==|-...         .+.+.+..++.|+|.+|+|++.|..|-.+|+.||.+|
T Consensus        94 L~~~SEiKE~GN~yFKQgKy~EAIDCYs~~i---------a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd  161 (536)
T KOG4648|consen   94 LKKASEIKERGNTYFKQGKYEEAIDCYSTAI---------AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD  161 (536)
T ss_pred             HHhhHHHHHhhhhhhhccchhHHHHHhhhhh---------ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence            3444444445566666666655554442221         1134455677888888888888888888888887776

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.26  E-value=0.0054  Score=37.23  Aligned_cols=32  Identities=31%  Similarity=0.465  Sum_probs=29.7

Q ss_pred             hhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          369 CWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       369 ~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      +++++|.|+.+++++.+|+...+++++..|.+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            57899999999999999999999999999864

>PRK15331 chaperone protein SicA; Provisional

Probab=96.22  E-value=0.019  Score=49.14  Aligned_cols=70  Identities=13%  Similarity=0.115  Sum_probs=55.5

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      ..+.+-..|-.+|..|+|..|...|+-.+.+               +......+..+|+|+..+++|.+|+..+..+..+
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~---------------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l  100 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIY---------------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL  100 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3455667799999999999999999776664               2222446788999999999999999999998888


Q ss_pred             ccccC
Q 015659          397 REAAR  401 (403)
Q Consensus       397 dp~~~  401 (403)
                      ++.|.
T Consensus       101 ~~~dp  105 (165)
T PRK15331        101 LKNDY  105 (165)
T ss_pred             ccCCC
Confidence            87664

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.20  E-value=0.02  Score=53.51  Aligned_cols=69  Identities=13%  Similarity=0.110  Sum_probs=54.5

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      .--.|..+|..|+|..|+..|+++++.....+            ....++++++.|+.+++++.+|+..++++++..|.+
T Consensus       183 ~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~------------~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s  250 (263)
T PRK10803        183 NYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP------------KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT  250 (263)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc------------chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            34567888888888888888888887644322            233477889999999999999999999999998876


Q ss_pred             C
Q 015659          401 R  401 (403)
Q Consensus       401 ~  401 (403)
                      .
T Consensus       251 ~  251 (263)
T PRK10803        251 D  251 (263)
T ss_pred             H
Confidence            3

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.19  E-value=0.014  Score=59.30  Aligned_cols=73  Identities=18%  Similarity=0.148  Sum_probs=61.7

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp  398 (403)
                      .-+...+..+|+..+|..|++.|.+-++++..+.     +    .....++.-|||.|||++.+.++|+....+|=+.||
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~-----~----~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~  425 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDN-----Y----SDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR  425 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchh-----h----hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc
Confidence            3467889999999999999999999999875532     1    223478999999999999999999999999988887


Q ss_pred             cc
Q 015659          399 AA  400 (403)
Q Consensus       399 ~~  400 (403)
                      -+
T Consensus       426 ~~  427 (872)
T KOG4814|consen  426 QS  427 (872)
T ss_pred             cc
Confidence            54

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.19  E-value=0.0077  Score=60.44  Aligned_cols=67  Identities=21%  Similarity=0.119  Sum_probs=58.6

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp  398 (403)
                      ..+...|-.+=|.++|..|+..|++||.+               .+.....|.-+|.||..+|+++.|+.+.++||-++|
T Consensus       456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l---------------~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p  520 (611)
T KOG1173|consen  456 PTLNNLGHAYRKLNKYEEAIDYYQKALLL---------------SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP  520 (611)
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHHHc---------------CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence            33556788888999999999999999997               333456889999999999999999999999999999


Q ss_pred             cc
Q 015659          399 AA  400 (403)
Q Consensus       399 ~~  400 (403)
                      .|
T Consensus       521 ~n  522 (611)
T KOG1173|consen  521 DN  522 (611)
T ss_pred             cc
Confidence            87

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.19  E-value=0.0045  Score=44.82  Aligned_cols=35  Identities=26%  Similarity=0.378  Sum_probs=32.3

Q ss_pred             HHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          367 VSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       367 ~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      ...+.++|.|++++++|.+|+.+++++|+++|.++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~   37 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA   37 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence            35789999999999999999999999999999875

...

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=96.13  E-value=0.017  Score=51.49  Aligned_cols=65  Identities=22%  Similarity=0.335  Sum_probs=36.7

Q ss_pred             HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      ..|.-++..|+|.+|+..|.+++.....             ......+.|++.|+.+++++.+|+..+.++++.+|.+
T Consensus       104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  168 (234)
T TIGR02521       104 NYGTFLCQQGKYEQAMQQFEQAIEDPLY-------------PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR  168 (234)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcccc-------------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence            3455556666666666666666653110             0112345566666666666666666666666666544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.03  E-value=0.0033  Score=39.04  Aligned_cols=34  Identities=29%  Similarity=0.353  Sum_probs=28.5

Q ss_pred             HHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHH
Q 015659          340 KYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIE  388 (403)
Q Consensus       340 ~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~  388 (403)
                      .|+|||++               ++-....++|+|.+|...|++++|++
T Consensus         1 ~y~kAie~---------------~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIEL---------------NPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHH---------------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            38889987               44456799999999999999999863

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.02  E-value=0.011  Score=38.95  Aligned_cols=34  Identities=18%  Similarity=0.214  Sum_probs=31.6

Q ss_pred             hhhHHHHHHHHccCHHHHHHHHHHHHhcccccCC
Q 015659          369 CWLNSAACCLKLKDYQGAIELCSKVIVEREAARG  402 (403)
Q Consensus       369 ~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~~  402 (403)
                      ++.++|.+|..+|++++|+..++++|+.+|.|..
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~   36 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPE   36 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence            5788999999999999999999999999999853

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.00  E-value=0.063  Score=43.25  Aligned_cols=74  Identities=14%  Similarity=0.208  Sum_probs=55.6

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      ..-..|...++.|-|+.|...|++|+.+-..   ++.++.=.-...-.-||.-|+-++.++++|++|+..+.++|.+
T Consensus        11 ~aLs~ae~ql~~g~~~eAa~s~r~AM~~srt---iP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y   84 (144)
T PF12968_consen   11 MALSDAERQLQDGAYEEAAASCRKAMEVSRT---IPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY   84 (144)
T ss_dssp             HHHHHHHHHHHHT-HHHHHHHHHHHHHHHTT---S-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc---CChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            3456788889999999999999999998543   3333332235566679999999999999999999999999864

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=95.94  E-value=0.027  Score=48.74  Aligned_cols=74  Identities=12%  Similarity=-0.075  Sum_probs=50.0

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHH-------HH
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIEL-------CS  391 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~-------~~  391 (403)
                      ..+...|.-+++.|++.+|+..|++|+.+-...        .........++.|++-.+.+++++..|+.+       ..
T Consensus        73 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~--------~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  144 (168)
T CHL00033         73 YILYNIGLIHTSNGEHTKALEYYFQALERNPFL--------PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWK  144 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--------HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHH
Confidence            356677899999999999999999999862111        111233344555555555599988855554       45


Q ss_pred             HHHhccccc
Q 015659          392 KVIVEREAA  400 (403)
Q Consensus       392 ~aL~~dp~~  400 (403)
                      +++..+|.+
T Consensus       145 ~a~~~~p~~  153 (168)
T CHL00033        145 QAIALAPGN  153 (168)
T ss_pred             HHHHhCccc
Confidence            677778754

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=95.82  E-value=0.0054  Score=58.07  Aligned_cols=88  Identities=16%  Similarity=0.148  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCC------------CCChH-----------HHHHHHHHHHHhh
Q 015659          314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG------------SFVDD-----------EQKLVKSLRVSCW  370 (403)
Q Consensus       314 ~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~------------~~~~~-----------~~~~~~~~~~~~~  370 (403)
                      ++..+.+..+.+.+....+.|..++..|++.++.-....            ...++           +.-.+.+-.+..+
T Consensus       265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l  344 (504)
T KOG0624|consen  265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVL  344 (504)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHH
Confidence            456777778889999999999999999999988521100            00000           0011222334455


Q ss_pred             hHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          371 LNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       371 ~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      .-+|-+|+--..|+.||+++.+|++++|.|.
T Consensus       345 ~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~  375 (504)
T KOG0624|consen  345 CDRAEAYLGDEMYDDAIHDYEKALELNESNT  375 (504)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence            5566666666666666666666666666553

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=95.80  E-value=0.015  Score=65.95  Aligned_cols=65  Identities=15%  Similarity=0.208  Sum_probs=56.5

Q ss_pred             HHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       322 k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      ...|..+++.|++.+|+..|++++..-.               -...++.++|.++++++++.+|+..+++||+++|.|.
T Consensus       355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P---------------~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~  419 (1157)
T PRK11447        355 IQQGDAALKANNLAQAERLYQQARQVDN---------------TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT  419 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            4568889999999999999999999721               1234788999999999999999999999999999875

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=95.73  E-value=0.02  Score=63.26  Aligned_cols=24  Identities=13%  Similarity=0.054  Sum_probs=19.9

Q ss_pred             HhhHhhhcCcHHHHHHHHHHHHHH
Q 015659          324 EGNLLFKNGKYERAGKKYNKAADC  347 (403)
Q Consensus       324 ~Gn~~fk~~~~~~A~~~Y~~al~~  347 (403)
                      .+..++..|++..|+..|++|+..
T Consensus       582 La~~l~~~Gr~~eAl~~~~~AL~l  605 (987)
T PRK09782        582 LHAQRYIPGQPELALNDLTRSLNI  605 (987)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHh
Confidence            345556779999999999999986

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.61  E-value=0.01  Score=61.75  Aligned_cols=79  Identities=28%  Similarity=0.402  Sum_probs=67.1

Q ss_pred             CchHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc--CHHHHH
Q 015659          310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK--DYQGAI  387 (403)
Q Consensus       310 ~~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~--~~~~ai  387 (403)
                      +...-+..+...+++||.+|..++|..|.-.|..++.++..+           +.....+++|++.|++.++  +|..++
T Consensus        45 di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~-----------~~~~a~~~~~~~s~~m~~~l~~~~~~~  113 (748)
T KOG4151|consen   45 DIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKD-----------HHVVATLRSNQASCYMQLGLGEYPKAI  113 (748)
T ss_pred             chHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheecccc-----------chhhhhHHHHHHHHHhhcCccchhhhc
Confidence            345567889999999999999999999999999999987643           3445779999999998765  799999


Q ss_pred             HHHHHHHhcccc
Q 015659          388 ELCSKVIVEREA  399 (403)
Q Consensus       388 ~~~~~aL~~dp~  399 (403)
                      ..|+-|+...|.
T Consensus       114 ~E~~la~~~~p~  125 (748)
T KOG4151|consen  114 PECELALESQPR  125 (748)
T ss_pred             Cchhhhhhccch
Confidence            999999988774

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=95.59  E-value=0.05  Score=55.39  Aligned_cols=75  Identities=27%  Similarity=0.202  Sum_probs=62.4

Q ss_pred             HHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIV  395 (403)
Q Consensus       316 ~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~  395 (403)
                      +.+..+.+.+..+=..++|+.|...|+++++++...++..       +......+.|||-+|+++|+|++|.....+||.
T Consensus       323 ~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~-------~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~  395 (508)
T KOG1840|consen  323 EVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED-------NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ  395 (508)
T ss_pred             HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc-------chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            3455667778888889999999999999999987543333       446678999999999999999999999999987


Q ss_pred             cc
Q 015659          396 ER  397 (403)
Q Consensus       396 ~d  397 (403)
                      ..
T Consensus       396 ~~  397 (508)
T KOG1840|consen  396 IL  397 (508)
T ss_pred             HH
Confidence            64

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=95.48  E-value=0.039  Score=58.29  Aligned_cols=74  Identities=20%  Similarity=0.323  Sum_probs=61.2

Q ss_pred             HHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIV  395 (403)
Q Consensus       316 ~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~  395 (403)
                      +.+.-+.+.+..+...|+|..|++.|..++.--.+.              +..++.++|-||+.+++++.|+..+.+||.
T Consensus       412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~--------------~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~  477 (895)
T KOG2076|consen  412 DDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ--------------NAFVWYKLARCYMELGEYEEAIEFYEKVLI  477 (895)
T ss_pred             hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc--------------chhhhHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            445567778888889999999999998877742111              156899999999999999999999999999


Q ss_pred             cccccCCC
Q 015659          396 EREAARGV  403 (403)
Q Consensus       396 ~dp~~~~~  403 (403)
                      ++|.|-|+
T Consensus       478 ~~p~~~D~  485 (895)
T KOG2076|consen  478 LAPDNLDA  485 (895)
T ss_pred             cCCCchhh
Confidence            99998663

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.45  E-value=0.023  Score=57.10  Aligned_cols=75  Identities=19%  Similarity=0.176  Sum_probs=60.0

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      .+++.|-..|+.+.|.+|...+++++........-.        ..-.++.+|++..+-|++++.+||...++||.+.|.
T Consensus       416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~--------~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k  487 (611)
T KOG1173|consen  416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK--------IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK  487 (611)
T ss_pred             hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc--------cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence            367889999999999999999999995543321100        023458999999999999999999999999999999


Q ss_pred             cCC
Q 015659          400 ARG  402 (403)
Q Consensus       400 ~~~  402 (403)
                      |+.
T Consensus       488 ~~~  490 (611)
T KOG1173|consen  488 DAS  490 (611)
T ss_pred             chh
Confidence            864

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=95.41  E-value=0.029  Score=63.66  Aligned_cols=67  Identities=13%  Similarity=0.052  Sum_probs=57.5

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      .+...|+.+...|++.+|+..|++|++.-..               ...+++++|.++.+++++++|+..++++++++|.
T Consensus       463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~---------------~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~  527 (1157)
T PRK11447        463 RLAQQAEALENQGKWAQAAELQRQRLALDPG---------------SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN  527 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            3456788899999999999999999997221               2347899999999999999999999999999998


Q ss_pred             cC
Q 015659          400 AR  401 (403)
Q Consensus       400 ~~  401 (403)
                      ++
T Consensus       528 ~~  529 (1157)
T PRK11447        528 DP  529 (1157)
T ss_pred             CH
Confidence            75

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.36  E-value=0.028  Score=35.91  Aligned_cols=31  Identities=26%  Similarity=0.235  Sum_probs=26.9

Q ss_pred             HHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          367 VSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       367 ~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      ..+++|+|.+|..+++|.+|+..+.+++++-
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            3578999999999999999999999998763

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=95.35  E-value=0.031  Score=59.40  Aligned_cols=67  Identities=7%  Similarity=-0.161  Sum_probs=48.3

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      .....++.+++.+++++|+..+++++..               .+.....++++|.|+.++++|++|+..++++|..+|.
T Consensus       122 a~~~~a~~L~~~~~~eeA~~~~~~~l~~---------------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~  186 (694)
T PRK15179        122 AFILMLRGVKRQQGIEAGRAEIELYFSG---------------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPE  186 (694)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHhhc---------------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC
Confidence            3445677777777777777777777775               2333557788888888888888888888888887776


Q ss_pred             cC
Q 015659          400 AR  401 (403)
Q Consensus       400 ~~  401 (403)
                      ++
T Consensus       187 ~~  188 (694)
T PRK15179        187 FE  188 (694)
T ss_pred             cH
Confidence            54

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.32  E-value=0.03  Score=41.57  Aligned_cols=33  Identities=18%  Similarity=0.198  Sum_probs=29.1

Q ss_pred             HHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          364 SLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       364 ~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      +....+++|+|.||..+++|++|+..++++|++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~   34 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDI   34 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            345679999999999999999999999999976

...

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=95.30  E-value=0.039  Score=58.72  Aligned_cols=27  Identities=15%  Similarity=0.151  Sum_probs=20.9

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADC  347 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~  347 (403)
                      +-..|..+++.|++.+|+..|++++..
T Consensus       287 ~~~lg~~l~~~g~~~eA~~~l~~al~l  313 (656)
T PRK15174        287 VTLYADALIRTGQNEKAIPLLQQSLAT  313 (656)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            345677888888888888888888875

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=95.30  E-value=0.019  Score=55.64  Aligned_cols=74  Identities=18%  Similarity=0.217  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHH
Q 015659          314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV  393 (403)
Q Consensus       314 ~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~a  393 (403)
                      ++.+.+..-..||.+|-.|+|..|+...+.-+.+.....   +      +.-.-.+++|++.||+-+++|..|++++.+.
T Consensus       191 r~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG---D------rAaeRRA~sNlgN~hiflg~fe~A~ehYK~t  261 (639)
T KOG1130|consen  191 RLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG---D------RAAERRAHSNLGNCHIFLGNFELAIEHYKLT  261 (639)
T ss_pred             HHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh---h------HHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence            444555566779999999999999999998888753311   1      2233458999999999999999999999998


Q ss_pred             Hhc
Q 015659          394 IVE  396 (403)
Q Consensus       394 L~~  396 (403)
                      |.+
T Consensus       262 l~L  264 (639)
T KOG1130|consen  262 LNL  264 (639)
T ss_pred             HHH
Confidence            654

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.25  E-value=0.072  Score=48.88  Aligned_cols=73  Identities=19%  Similarity=0.147  Sum_probs=60.0

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      +..+-+.|....+.|+|.+|++.|++.......    +        ++.-+..+.++.++.|-++|..|+...++=+.+.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~----s--------~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly  101 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPF----S--------PYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY  101 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----C--------cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence            566778899999999999999999887764322    2        1223477889999999999999999999999999


Q ss_pred             cccCC
Q 015659          398 EAARG  402 (403)
Q Consensus       398 p~~~~  402 (403)
                      |.+..
T Consensus       102 P~~~n  106 (254)
T COG4105         102 PTHPN  106 (254)
T ss_pred             CCCCC
Confidence            98865

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=95.19  E-value=0.038  Score=59.79  Aligned_cols=69  Identities=16%  Similarity=0.097  Sum_probs=58.6

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      +..+...|+.+++.|+|..|+..|+++++.-..               ...++..+|.+++++++|.+|+..++++++..
T Consensus        22 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~   86 (899)
T TIGR02917        22 PESLIEAAKSYLQKNKYKAAIIQLKNALQKDPN---------------DAEARFLLGKIYLALGDYAAAEKELRKALSLG   86 (899)
T ss_pred             HHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            345677899999999999999999999986222               23578889999999999999999999999998


Q ss_pred             cccC
Q 015659          398 EAAR  401 (403)
Q Consensus       398 p~~~  401 (403)
                      |.+.
T Consensus        87 ~~~~   90 (899)
T TIGR02917        87 YPKN   90 (899)
T ss_pred             CChh
Confidence            8654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=95.16  E-value=0.057  Score=49.26  Aligned_cols=69  Identities=10%  Similarity=0.070  Sum_probs=55.7

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHc--------cCHHHHHHHHHH
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL--------KDYQGAIELCSK  392 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl--------~~~~~ai~~~~~  392 (403)
                      .-..|..+++.++|..|+..|+++++........            ...+++++.|++++        +++.+|+..+++
T Consensus        73 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~  140 (235)
T TIGR03302        73 QLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA------------DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQE  140 (235)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch------------HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence            4557899999999999999999999974332211            12577888888876        889999999999


Q ss_pred             HHhcccccC
Q 015659          393 VIVEREAAR  401 (403)
Q Consensus       393 aL~~dp~~~  401 (403)
                      ++..+|.+.
T Consensus       141 ~~~~~p~~~  149 (235)
T TIGR03302       141 LIRRYPNSE  149 (235)
T ss_pred             HHHHCCCCh
Confidence            999999874

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=95.05  E-value=0.033  Score=57.66  Aligned_cols=65  Identities=15%  Similarity=0.358  Sum_probs=56.8

Q ss_pred             HHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       322 k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      +..|+-.+++++|.+|.+.++..+.+               +++....++++..|++|+++|+.|.+++...+.++|+|+
T Consensus       489 r~~~~~~~~~~~fs~~~~hle~sl~~---------------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~  553 (777)
T KOG1128|consen  489 RSLALLILSNKDFSEADKHLERSLEI---------------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNA  553 (777)
T ss_pred             HhhccccccchhHHHHHHHHHHHhhc---------------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCch
Confidence            44556667789999999999999997               667788999999999999999999999999999999986

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=95.02  E-value=0.095  Score=44.14  Aligned_cols=60  Identities=18%  Similarity=0.201  Sum_probs=49.4

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHH
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK  392 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~  392 (403)
                      .-..|+.+|..|+|.+|...|++++.--     .+       ..+...+.+++|.|++.+++|++|+...+.
T Consensus        51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~d-------~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   51 ALQLAKAAYEQGDYDEAKAALEKALANA-----PD-------PELKPLARLRLARILLQQGQYDEALATLQQ  110 (145)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CC-------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            3457899999999999999999999852     11       345566888999999999999999998865

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=94.97  E-value=0.075  Score=50.00  Aligned_cols=82  Identities=23%  Similarity=0.256  Sum_probs=57.0

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCC-----------CCCh-HH-HHHHHH------HHHHhhhHHHHHHHHc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-----------SFVD-DE-QKLVKS------LRVSCWLNSAACCLKL  380 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-----------~~~~-~~-~~~~~~------~~~~~~~N~a~c~lkl  380 (403)
                      -+...|+-+.+.|++.+|++.|++|++.-..+.           ...+ ++ ...+..      -...++..+|.+++++
T Consensus       148 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l  227 (280)
T PF13429_consen  148 FWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL  227 (280)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc
Confidence            345678888899999999999999999742211           0011 11 011111      1234678899999999


Q ss_pred             cCHHHHHHHHHHHHhcccccC
Q 015659          381 KDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       381 ~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      +++++|+..+++++..+|.|.
T Consensus       228 g~~~~Al~~~~~~~~~~p~d~  248 (280)
T PF13429_consen  228 GRYEEALEYLEKALKLNPDDP  248 (280)
T ss_dssp             T-HHHHHHHHHHHHHHSTT-H
T ss_pred             ccccccccccccccccccccc
Confidence            999999999999999999874

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=94.94  E-value=0.1  Score=48.83  Aligned_cols=67  Identities=6%  Similarity=-0.040  Sum_probs=53.5

Q ss_pred             HHhhHh-hhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          323 EEGNLL-FKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       323 ~~Gn~~-fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      ..+-.+ ++.|+|.+|+..|++.++......            +...+++-++.+|++.++|.+|+..+.+++...|.+.
T Consensus       147 ~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~------------~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~  214 (263)
T PRK10803        147 NAAIALVQDKSRQDDAIVAFQNFVKKYPDST------------YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP  214 (263)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence            334444 567999999999999999753321            2234678899999999999999999999999999865

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=94.92  E-value=0.078  Score=52.15  Aligned_cols=31  Identities=16%  Similarity=0.223  Sum_probs=19.1

Q ss_pred             hhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          369 CWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       369 ~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      ++++++.+|.+++++++|+...+++++.+|.
T Consensus       251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~  281 (389)
T PRK11788        251 VLPKLMECYQALGDEAEGLEFLRRALEEYPG  281 (389)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            3455666666666666666666666666554

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=94.88  E-value=0.049  Score=57.95  Aligned_cols=62  Identities=16%  Similarity=0.167  Sum_probs=33.5

Q ss_pred             HhhHhhhcCcHHH----HHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          324 EGNLLFKNGKYER----AGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       324 ~Gn~~fk~~~~~~----A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      .|..++..|+|..    |+..|++|+.+-               +-...++.|++.+++++++|++|+..++++|+++|.
T Consensus       252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~---------------P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~  316 (656)
T PRK15174        252 LGLAYYQSGRSREAKLQAAEHWRHALQFN---------------SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD  316 (656)
T ss_pred             HHHHHHHcCCchhhHHHHHHHHHHHHhhC---------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            4555566666653    566666666541               112234555555555555555555555555555555


Q ss_pred             c
Q 015659          400 A  400 (403)
Q Consensus       400 ~  400 (403)
                      +
T Consensus       317 ~  317 (656)
T PRK15174        317 L  317 (656)
T ss_pred             C
Confidence            4

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=94.86  E-value=0.08  Score=52.04  Aligned_cols=82  Identities=16%  Similarity=0.084  Sum_probs=51.3

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCC-------------CCChHHHHHHH-----------HHHHHhhhHHHH
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-------------SFVDDEQKLVK-----------SLRVSCWLNSAA  375 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-------------~~~~~~~~~~~-----------~~~~~~~~N~a~  375 (403)
                      .+...|..+++.|+|.+|...|.++++.-....             +..++-...++           .....++.+++.
T Consensus       109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~  188 (389)
T PRK11788        109 ALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ  188 (389)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence            345557778888888888888888876311000             00000000111           112345678888


Q ss_pred             HHHHccCHHHHHHHHHHHHhcccccC
Q 015659          376 CCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       376 c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      ++++.+++.+|+..++++++.+|.+.
T Consensus       189 ~~~~~~~~~~A~~~~~~al~~~p~~~  214 (389)
T PRK11788        189 QALARGDLDAARALLKKALAADPQCV  214 (389)
T ss_pred             HHHhCCCHHHHHHHHHHHHhHCcCCH
Confidence            88999999999999999998888653

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=94.73  E-value=0.063  Score=57.12  Aligned_cols=70  Identities=1%  Similarity=-0.156  Sum_probs=60.9

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      +..+...|--....|+|+.|...+..++.+               .+-...++.|+|.+..+++++++|+..|+++|..+
T Consensus        86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~---------------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~  150 (694)
T PRK15179         86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR---------------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG  150 (694)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh---------------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence            444566777788899999999999999997               34457799999999999999999999999999999


Q ss_pred             cccCC
Q 015659          398 EAARG  402 (403)
Q Consensus       398 p~~~~  402 (403)
                      |.|+.
T Consensus       151 p~~~~  155 (694)
T PRK15179        151 SSSAR  155 (694)
T ss_pred             CCCHH
Confidence            99863

>PRK12370 invasion protein regulator; Provisional

Probab=94.66  E-value=0.035  Score=57.83  Aligned_cols=58  Identities=10%  Similarity=-0.066  Sum_probs=49.2

Q ss_pred             hcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccCC
Q 015659          330 KNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAARG  402 (403)
Q Consensus       330 k~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~~  402 (403)
                      ..+++.+|+..|++|+.+               .+....++.++|.++..+++|++|+..+++||+++|.++.
T Consensus       316 ~~~~~~~A~~~~~~Al~l---------------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~  373 (553)
T PRK12370        316 KQNAMIKAKEHAIKATEL---------------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISAD  373 (553)
T ss_pred             cchHHHHHHHHHHHHHhc---------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence            456789999999999997               2223457889999999999999999999999999998763

>PLN02789 farnesyltranstransferase

Probab=94.58  E-value=0.064  Score=51.73  Aligned_cols=58  Identities=12%  Similarity=0.170  Sum_probs=35.0

Q ss_pred             hhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc-CHHHHHHHHHHHHhccccc
Q 015659          328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-DYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       328 ~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~-~~~~ai~~~~~aL~~dp~~  400 (403)
                      +.+.+++++|+..|.++|.+               .+-...++++++.|+.+++ .+.+++..+++|++.+|.|
T Consensus        47 l~~~e~serAL~lt~~aI~l---------------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn  105 (320)
T PLN02789         47 YASDERSPRALDLTADVIRL---------------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN  105 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHH---------------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc
Confidence            45677999999999999986               2223344445555555554 3455555555555555544

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=94.54  E-value=0.051  Score=57.90  Aligned_cols=68  Identities=15%  Similarity=0.111  Sum_probs=55.0

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      .+--+|--+|.+++|..|+..|++|+.+..... .+             ...=++.|+.|+++-..|+....+||++||.
T Consensus       166 ~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~-aD-------------~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~  231 (1018)
T KOG2002|consen  166 ALLGKARIAYNKKDYRGALKYYKKALRINPACK-AD-------------VRIGIGHCFWKLGMSEKALLAFERALQLDPT  231 (1018)
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHhcCcccC-CC-------------ccchhhhHHHhccchhhHHHHHHHHHhcChh
Confidence            345667778999999999999999999754322 11             3344689999999999999999999999997


Q ss_pred             cC
Q 015659          400 AR  401 (403)
Q Consensus       400 ~~  401 (403)
                      ++
T Consensus       232 ~v  233 (1018)
T KOG2002|consen  232 CV  233 (1018)
T ss_pred             hH
Confidence            65

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.51  E-value=0.085  Score=32.00  Aligned_cols=29  Identities=24%  Similarity=0.289  Sum_probs=25.0

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADC  347 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~  347 (403)
                      .-+...|.-+|+.|+|++|+..|++|+++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            34567899999999999999999999997

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.49  E-value=0.21  Score=38.73  Aligned_cols=67  Identities=16%  Similarity=0.184  Sum_probs=50.4

Q ss_pred             hhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       328 ~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      ..+.++|..|+....+..++.........      ........+|+|.++..+|++++|+..+++|+++-..+
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~   74 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN   74 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            45789999999999998887543221111      22344568999999999999999999999999875443

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=94.45  E-value=0.071  Score=46.30  Aligned_cols=55  Identities=16%  Similarity=0.124  Sum_probs=42.4

Q ss_pred             CcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc-----------CHHHHHHHHHHHHhccccc
Q 015659          332 GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-----------DYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       332 ~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~-----------~~~~ai~~~~~aL~~dp~~  400 (403)
                      .-++.|+.+|++||.+               ++.+...+.|++.+|..+.           -|++|..+..+|.+.+|+|
T Consensus        49 ~miedAisK~eeAL~I---------------~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n  113 (186)
T PF06552_consen   49 KMIEDAISKFEEALKI---------------NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN  113 (186)
T ss_dssp             HHHHHHHHHHHHHHHH----------------TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred             HHHHHHHHHHHHHHhc---------------CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            3577888888888887               5566778889999988766           3899999999999999998


Q ss_pred             C
Q 015659          401 R  401 (403)
Q Consensus       401 ~  401 (403)
                      .
T Consensus       114 e  114 (186)
T PF06552_consen  114 E  114 (186)
T ss_dssp             H
T ss_pred             H
Confidence            4

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=94.40  E-value=0.085  Score=57.22  Aligned_cols=27  Identities=7%  Similarity=-0.038  Sum_probs=23.4

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADC  347 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~  347 (403)
                      +...|..+.+.|++.+|+..|++++..
T Consensus        52 ~~~lA~~~~~~g~~~~A~~~~~~al~~   78 (765)
T PRK10049         52 YAAVAVAYRNLKQWQNSLTLWQKALSL   78 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            566788889999999999999999986

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.38  E-value=0.4  Score=35.74  Aligned_cols=68  Identities=15%  Similarity=0.224  Sum_probs=54.4

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      .+.+.-++|-.+|...+.++|++++++|++-+..            .+.+-.++.=++.+|.-.|+|.++++.+..=+++
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~------------~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITD------------REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667778999999999999999999999997543            1223446666889999999999999988765554

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=94.30  E-value=0.25  Score=40.34  Aligned_cols=66  Identities=20%  Similarity=0.126  Sum_probs=53.1

Q ss_pred             HHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       322 k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      -+.|..+-..|+.++|+..|++|+..     +.+       ...+..++.+++.++-.+|++++|+...++++.-.|.
T Consensus         5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~-------~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~   70 (120)
T PF12688_consen    5 YELAWAHDSLGREEEAIPLYRRALAA-----GLS-------GADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD   70 (120)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            45667777889999999999999995     222       2233458889999999999999999999999988776

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.26  E-value=0.1  Score=31.78  Aligned_cols=29  Identities=31%  Similarity=0.424  Sum_probs=25.3

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADC  347 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~  347 (403)
                      ..+-..|..++..++|.+|+..|++|+++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            45667899999999999999999999997

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=94.22  E-value=0.093  Score=56.81  Aligned_cols=84  Identities=23%  Similarity=0.161  Sum_probs=49.9

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCC-------------ChHHHHH------HHHHHHHhhhHHHHHH
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF-------------VDDEQKL------VKSLRVSCWLNSAACC  377 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~-------------~~~~~~~------~~~~~~~~~~N~a~c~  377 (403)
                      .+..+...|..+++.|+|.+|...|++++..-......             .++-...      ..+.....+..++.++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  203 (899)
T TIGR02917       124 AAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLL  203 (899)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            34556678999999999999999999998752211000             0000000      0111233555666666


Q ss_pred             HHccCHHHHHHHHHHHHhccccc
Q 015659          378 LKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       378 lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      ++++++.+|+..++++++++|.+
T Consensus       204 ~~~g~~~~A~~~~~~a~~~~p~~  226 (899)
T TIGR02917       204 LSLGNIELALAAYRKAIALRPNN  226 (899)
T ss_pred             HhcCCHHHHHHHHHHHHhhCCCC
Confidence            66666666666666666666654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.03  E-value=0.1  Score=32.55  Aligned_cols=27  Identities=26%  Similarity=0.412  Sum_probs=23.2

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADC  347 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~  347 (403)
                      +...|+-+++.|+|++|+..|++++.+
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            456799999999999999999998865

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.01  E-value=0.34  Score=42.45  Aligned_cols=68  Identities=18%  Similarity=0.176  Sum_probs=56.6

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      .-..+.+.|+-+++.|++..|++.|.++.+++..            ....+..++|+..+.+-+++|..+..+.++|-.+
T Consensus        35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~------------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~  102 (177)
T PF10602_consen   35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTS------------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL  102 (177)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            3455668899999999999999999999998544            4456778889999999999999999998888443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.98  E-value=0.12  Score=51.49  Aligned_cols=86  Identities=15%  Similarity=0.103  Sum_probs=65.1

Q ss_pred             HHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCC-------------CChHH------HHHHHHHHHHhhhHHHHH
Q 015659          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS-------------FVDDE------QKLVKSLRVSCWLNSAAC  376 (403)
Q Consensus       316 ~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~-------------~~~~~------~~~~~~~~~~~~~N~a~c  376 (403)
                      ..+..+--+|.-+|-.|++..|-..+.++|.+-.....             .+++-      ...+++....+|.-|++.
T Consensus       324 ~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm  403 (606)
T KOG0547|consen  324 YMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQM  403 (606)
T ss_pred             HHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHH
Confidence            45777888999999999999999999999986322221             11111      133455666788889999


Q ss_pred             HHHccCHHHHHHHHHHHHhcccccC
Q 015659          377 CLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       377 ~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      ++=+++|+.|+.+..++++++|.|+
T Consensus       404 ~flL~q~e~A~aDF~Kai~L~pe~~  428 (606)
T KOG0547|consen  404 RFLLQQYEEAIADFQKAISLDPENA  428 (606)
T ss_pred             HHHHHHHHHHHHHHHHHhhcChhhh
Confidence            9999999999999999999998875

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.87  E-value=0.074  Score=53.72  Aligned_cols=53  Identities=17%  Similarity=0.224  Sum_probs=39.6

Q ss_pred             HHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          339 KKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       339 ~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      +.|.||+++++.--        ..++-...+++.+.+.+-.-.+..+||..+++||++-|+
T Consensus       444 ~efdraiDcf~~AL--------~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~  496 (579)
T KOG1125|consen  444 GEFDRAVDCFEAAL--------QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG  496 (579)
T ss_pred             hHHHHHHHHHHHHH--------hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC
Confidence            44778888776511        113334568888899988889999999999999999886

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=93.81  E-value=0.087  Score=49.92  Aligned_cols=62  Identities=18%  Similarity=0.356  Sum_probs=53.2

Q ss_pred             HHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       322 k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp  398 (403)
                      -+++-..|--|||..|+.--++|+.+               ++-..+++..-|.|++.|+.|..|+..|++.|++|-
T Consensus       123 ~NRAAa~~~l~NyRs~l~Dcs~al~~---------------~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~  184 (390)
T KOG0551|consen  123 TNRAAAQLYLGNYRSALNDCSAALKL---------------KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD  184 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhc---------------CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence            34455555668999999999999997               666789999999999999999999999999998874

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.73  E-value=0.065  Score=49.25  Aligned_cols=66  Identities=12%  Similarity=0.140  Sum_probs=54.5

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      .+..+--+.-+.||..|.+.|.+++..               ++-.+..-+|-|+|++-+++..+|++..+.+++.+|..
T Consensus       255 ~~n~a~i~lg~nn~a~a~r~~~~i~~~---------------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  255 LMNSAFLHLGQNNFAEAHRFFTEILRM---------------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             HhhhhhheecccchHHHHHHHhhcccc---------------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            345555566788999999999999886               22235577999999999999999999999999999986


Q ss_pred             C
Q 015659          401 R  401 (403)
Q Consensus       401 ~  401 (403)
                      +
T Consensus       320 ~  320 (366)
T KOG2796|consen  320 Y  320 (366)
T ss_pred             c
Confidence            4

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=93.71  E-value=0.12  Score=51.28  Aligned_cols=64  Identities=22%  Similarity=0.177  Sum_probs=54.3

Q ss_pred             HhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccCC
Q 015659          324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAARG  402 (403)
Q Consensus       324 ~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~~  402 (403)
                      .+--+++.++.++|...+++++...               +....+..|+|.+++|.+++++|+...+..+.-+|.|++
T Consensus       346 ~~~i~~~~nk~~~A~e~~~kal~l~---------------P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~  409 (484)
T COG4783         346 AGDILLEANKAKEAIERLKKALALD---------------PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPN  409 (484)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHhcC---------------CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Confidence            3555678889999999999999973               333568899999999999999999999999999998864

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=93.57  E-value=0.12  Score=55.96  Aligned_cols=35  Identities=17%  Similarity=0.233  Sum_probs=22.2

Q ss_pred             HhhhHHHHHHHHccCHHHHHHHHHHHHhcccccCC
Q 015659          368 SCWLNSAACCLKLKDYQGAIELCSKVIVEREAARG  402 (403)
Q Consensus       368 ~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~~  402 (403)
                      .++..+|.+++++++|.+|....+++|+.+|.|+.
T Consensus       428 ~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~  462 (765)
T PRK10049        428 NLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG  462 (765)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence            35556666666666666666666666666666553

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=93.51  E-value=0.7  Score=37.48  Aligned_cols=78  Identities=17%  Similarity=0.043  Sum_probs=61.8

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHH----HHHhc
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCS----KVIVE  396 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~----~aL~~  396 (403)
                      .--.|+..|+++++-.|+-.|++|+.+.+.....++.+..++--+.+...-|||.-+-.+++-+=.+++..    +||.+
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL   83 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL   83 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence            44578999999999999999999999877654445566667777888889999999999999888877653    44554


Q ss_pred             cc
Q 015659          397 RE  398 (403)
Q Consensus       397 dp  398 (403)
                      -|
T Consensus        84 iP   85 (140)
T PF10952_consen   84 IP   85 (140)
T ss_pred             cc
Confidence            44

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=93.42  E-value=0.053  Score=55.52  Aligned_cols=81  Identities=14%  Similarity=0.085  Sum_probs=58.4

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhcc----------CCCCChHHHHHH---------HHHHHHhhhHHHHHHHHcc
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSE----------DGSFVDDEQKLV---------KSLRVSCWLNSAACCLKLK  381 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~----------~~~~~~~~~~~~---------~~~~~~~~~N~a~c~lkl~  381 (403)
                      ....||=+=-+++|+.|++++++|+.+=..          .....+|.....         .+-...+++=+..+|+|++
T Consensus       424 Wca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqe  503 (638)
T KOG1126|consen  424 WCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQE  503 (638)
T ss_pred             HHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccc
Confidence            456798888899999999999999995321          011122222211         2223346777899999999


Q ss_pred             CHHHHHHHHHHHHhcccccC
Q 015659          382 DYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       382 ~~~~ai~~~~~aL~~dp~~~  401 (403)
                      +++.|..+..+|++++|.|.
T Consensus       504 k~e~Ae~~fqkA~~INP~ns  523 (638)
T KOG1126|consen  504 KLEFAEFHFQKAVEINPSNS  523 (638)
T ss_pred             hhhHHHHHHHhhhcCCccch
Confidence            99999999999999999874

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=93.41  E-value=0.13  Score=49.86  Aligned_cols=25  Identities=24%  Similarity=0.243  Sum_probs=20.0

Q ss_pred             HHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659          323 EEGNLLFKNGKYERAGKKYNKAADC  347 (403)
Q Consensus       323 ~~Gn~~fk~~~~~~A~~~Y~~al~~  347 (403)
                      ..|..+...|+|.+|...|++++..
T Consensus       119 ~~a~~~~~~G~~~~A~~~~~~al~~  143 (355)
T cd05804         119 MLAFGLEEAGQYDRAEEAARRALEL  143 (355)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4566777888888888888888885

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PLN02789 farnesyltranstransferase

Probab=93.30  E-value=0.18  Score=48.62  Aligned_cols=39  Identities=13%  Similarity=0.312  Sum_probs=34.8

Q ss_pred             HHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          363 KSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       363 ~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      ++-...++++++.++.++++|++++..|+++|+.||.|.
T Consensus       138 dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~  176 (320)
T PLN02789        138 DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN  176 (320)
T ss_pred             CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch
Confidence            444567899999999999999999999999999999885

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=93.17  E-value=0.25  Score=50.91  Aligned_cols=62  Identities=18%  Similarity=0.025  Sum_probs=53.1

Q ss_pred             HhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       324 ~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      .|-.+...|++++|...|++|+.+-               + ....|..++.++.-.|++++|+..+.+|+.++|...
T Consensus       426 la~~~~~~g~~~~A~~~l~rAl~L~---------------p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        426 LAVQALVKGKTDEAYQAINKAIDLE---------------M-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcC---------------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            4555667899999999999999972               2 134889999999999999999999999999999864

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=93.12  E-value=0.54  Score=34.89  Aligned_cols=60  Identities=18%  Similarity=0.148  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc-CCCCChHHHHHHHHHHHHhhhHHH
Q 015659          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE-DGSFVDDEQKLVKSLRVSCWLNSA  374 (403)
Q Consensus       315 ~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~-~~~~~~~~~~~~~~~~~~~~~N~a  374 (403)
                      +..|..+-.+|.+.=++|+|++|+..|..+++++.. .....++..+..-..++.=|+++|
T Consensus         3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~RA   63 (75)
T cd02677           3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYLKRA   63 (75)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence            345666667788888889999999999999999865 333344455555555566666665

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.09  E-value=0.12  Score=50.93  Aligned_cols=81  Identities=21%  Similarity=0.221  Sum_probs=49.5

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc------CCCCC-------hHHHHHHHHHHHHh------hhHHHHHHHHc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSE------DGSFV-------DDEQKLVKSLRVSC------WLNSAACCLKL  380 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~------~~~~~-------~~~~~~~~~~~~~~------~~N~a~c~lkl  380 (403)
                      .+-..||..|.+|+|.+|...|+.||.--.+      .-+.+       ++-...+-++...+      +.-+|..|--+
T Consensus       492 a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~l  571 (840)
T KOG2003|consen  492 ALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELL  571 (840)
T ss_pred             HhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            3457799999999999999999999873111      01111       11122222222222      22345556667


Q ss_pred             cCHHHHHHHHHHHHhccccc
Q 015659          381 KDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       381 ~~~~~ai~~~~~aL~~dp~~  400 (403)
                      .+..+||....+|-.+-|.+
T Consensus       572 ed~aqaie~~~q~~slip~d  591 (840)
T KOG2003|consen  572 EDPAQAIELLMQANSLIPND  591 (840)
T ss_pred             hCHHHHHHHHHHhcccCCCC
Confidence            77788888877777766654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=93.07  E-value=0.27  Score=48.72  Aligned_cols=61  Identities=21%  Similarity=0.348  Sum_probs=50.6

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHH
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV  393 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~a  393 (403)
                      +.-+...+.-+.+.++|+.|+..-++|+.+..               ..-.++..||.||+++++|+.|+...+-+
T Consensus       234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP---------------~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  234 SELLNLQAEFLLSKKKYELALEIAKKAVELSP---------------SEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc---------------hhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            34455678888999999999999999999833               33568899999999999999999887754

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.01  E-value=0.45  Score=44.91  Aligned_cols=87  Identities=22%  Similarity=0.186  Sum_probs=67.8

Q ss_pred             ccCchHHHHHHHHHHHHhhHhhhcC-cHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHH
Q 015659          308 EMNNQGKIEAAGRKKEEGNLLFKNG-KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGA  386 (403)
Q Consensus       308 ~m~~~e~~~~~~~~k~~Gn~~fk~~-~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~a  386 (403)
                      .+++......+..+-+.|..+++++ +|..|..--++|.++++.... .+.......+++.+++.-+|.||+..+.++..
T Consensus        25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~-~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~  103 (278)
T PF08631_consen   25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK-MDKLSPDGSELRLSILRLLANAYLEWDTYESV  103 (278)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh-ccccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence            5577778889999999999999999 999999999999999865211 11222334678899999999999999988655


Q ss_pred             HHHHHHHHhc
Q 015659          387 IELCSKVIVE  396 (403)
Q Consensus       387 i~~~~~aL~~  396 (403)
                      .+ |..+|+.
T Consensus       104 ~k-a~~~l~~  112 (278)
T PF08631_consen  104 EK-ALNALRL  112 (278)
T ss_pred             HH-HHHHHHH
Confidence            44 6666543

It is also involved in sporulation [].

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.80  E-value=0.35  Score=44.79  Aligned_cols=65  Identities=18%  Similarity=0.232  Sum_probs=47.6

Q ss_pred             hhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       325 Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      |..+|..|+|..|...|..+++-+...+..+|            .++-++.|+..+++.+.|.....++++.-|+++
T Consensus       185 Ge~~y~qg~y~~Aa~~f~~~~k~~P~s~KApd------------allKlg~~~~~l~~~d~A~atl~qv~k~YP~t~  249 (262)
T COG1729         185 GESLYAQGDYEDAAYIFARVVKDYPKSPKAPD------------ALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD  249 (262)
T ss_pred             HHHHHhcccchHHHHHHHHHHHhCCCCCCChH------------HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence            66666666666666666666664433333322            667789999999999999999999999888864

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=92.74  E-value=0.11  Score=53.18  Aligned_cols=39  Identities=15%  Similarity=0.044  Sum_probs=30.5

Q ss_pred             HHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          363 KSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       363 ~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      .+-...+..=+...+.++|+.++|+...++|+.+||.|.
T Consensus       519 NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~  557 (638)
T KOG1126|consen  519 NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP  557 (638)
T ss_pred             CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence            344455666677888899999999999999999998873

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=92.63  E-value=0.94  Score=33.54  Aligned_cols=64  Identities=20%  Similarity=0.198  Sum_probs=44.9

Q ss_pred             HHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc-CCCCChHHHHHHHHHHHHhhhHHHHHHHH
Q 015659          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE-DGSFVDDEQKLVKSLRVSCWLNSAACCLK  379 (403)
Q Consensus       316 ~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~-~~~~~~~~~~~~~~~~~~~~~N~a~c~lk  379 (403)
                      +.|..+-.++-++=+.|+|.+|+.+|++|+..|.. ...-+++....+-.-++.=|.|+|-..-+
T Consensus         4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk~   68 (75)
T cd02682           4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLEK   68 (75)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777888888999999999999999998854 22333344444445566667777765433

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=92.61  E-value=0.57  Score=34.98  Aligned_cols=59  Identities=19%  Similarity=0.203  Sum_probs=40.3

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc-CCCCChHHHHHHHHHHHHhhhHHHH
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE-DGSFVDDEQKLVKSLRVSCWLNSAA  375 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~-~~~~~~~~~~~~~~~~~~~~~N~a~  375 (403)
                      .+..+-.+|.++=+.|+|.+|+..|.+||++|.. ...-+++.....-..++.-|.++|-
T Consensus         5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE   64 (77)
T cd02683           5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAE   64 (77)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHH
Confidence            4556666788888999999999999999999855 2222333444444455556666653

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=92.57  E-value=0.62  Score=34.59  Aligned_cols=60  Identities=17%  Similarity=0.008  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc-CCCCChHHHHHHHHHHHHhhhHHH
Q 015659          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE-DGSFVDDEQKLVKSLRVSCWLNSA  374 (403)
Q Consensus       315 ~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~-~~~~~~~~~~~~~~~~~~~~~N~a  374 (403)
                      +..|..+-.+|.+.=+.|+|+.|+..|..||+++.. ...-+++.....-.-++.=|+++|
T Consensus         3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~eyl~RA   63 (75)
T cd02684           3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQYVSRA   63 (75)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHH
Confidence            456677777888888999999999999999999855 222233333333333444455553

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=92.42  E-value=0.69  Score=43.68  Aligned_cols=72  Identities=32%  Similarity=0.354  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHH
Q 015659          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI  394 (403)
Q Consensus       315 ~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL  394 (403)
                      -..+..+...||.+=..++|.+|...|.+|.++......         .......|.+.+.|+.+. ++.+|+..+++|+
T Consensus        32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~---------~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~  101 (282)
T PF14938_consen   32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGD---------KFEAAKAYEEAANCYKKG-DPDEAIECYEKAI  101 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH
Confidence            345666677777776888999999999999998644211         223456788888888777 9999999999998


Q ss_pred             hc
Q 015659          395 VE  396 (403)
Q Consensus       395 ~~  396 (403)
                      ++
T Consensus       102 ~~  103 (282)
T PF14938_consen  102 EI  103 (282)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=92.38  E-value=0.14  Score=50.91  Aligned_cols=39  Identities=5%  Similarity=-0.066  Sum_probs=35.5

Q ss_pred             HHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          363 KSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       363 ~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      ++-....++|++.+|+++++|++|+..|++||+++|.++
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a  109 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD  109 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Confidence            455567999999999999999999999999999999875

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=92.36  E-value=0.16  Score=42.00  Aligned_cols=33  Identities=18%  Similarity=0.375  Sum_probs=30.6

Q ss_pred             hhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          369 CWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       369 ~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      |.+-+|..|.++|+|..++.+|+..|+.+|.|.
T Consensus        73 ~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~  105 (149)
T KOG3364|consen   73 CLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR  105 (149)
T ss_pred             hhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence            566699999999999999999999999999985

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=92.24  E-value=0.66  Score=42.95  Aligned_cols=65  Identities=22%  Similarity=0.283  Sum_probs=53.8

Q ss_pred             HHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIV  395 (403)
Q Consensus       322 k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~  395 (403)
                      .+.|.++|+.|+|.+|++.|+.+...+...+         ...+...++.++..|+.++++.+..+..|-+.|.
T Consensus       182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~eg---------W~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLls  246 (247)
T PF11817_consen  182 LEMAEEYFRLGDYDKALKLLEPAASSYRREG---------WWSLLTEVLWRLLECAKRLGDVEDYLTTSLELLS  246 (247)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC---------cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            3789999999999999999999966543211         1456677889999999999999999999988764

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=92.20  E-value=0.83  Score=33.99  Aligned_cols=60  Identities=17%  Similarity=0.105  Sum_probs=38.9

Q ss_pred             HHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc--CCCCChHHHHHHHHHHHHhhhHHHH
Q 015659          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE--DGSFVDDEQKLVKSLRVSCWLNSAA  375 (403)
Q Consensus       316 ~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~--~~~~~~~~~~~~~~~~~~~~~N~a~  375 (403)
                      ..|..+-..+-++=+.|+|.+|+..|+.|+++|..  .....++.....-..++.=|.+||-
T Consensus         4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eYl~RAE   65 (76)
T cd02681           4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEYLDRAQ   65 (76)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence            34566667788888999999999999999999854  2221222222222445555666654

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=91.68  E-value=0.34  Score=52.71  Aligned_cols=86  Identities=8%  Similarity=0.052  Sum_probs=59.5

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCC-CCC----------hHH--HHHHH------HHHHHhhhHHHHHH
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-SFV----------DDE--QKLVK------SLRVSCWLNSAACC  377 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-~~~----------~~~--~~~~~------~~~~~~~~N~a~c~  377 (403)
                      .+......+-..|+.|+|..|+..|+++++.-.... ...          ..+  ...++      ......+..+|.++
T Consensus        33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly  112 (822)
T PRK14574         33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY  112 (822)
T ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence            344667788889999999999999999998633221 100          000  01111      11233455567799


Q ss_pred             HHccCHHHHHHHHHHHHhcccccCC
Q 015659          378 LKLKDYQGAIELCSKVIVEREAARG  402 (403)
Q Consensus       378 lkl~~~~~ai~~~~~aL~~dp~~~~  402 (403)
                      ..+++|++|+..++++|+.+|.|..
T Consensus       113 ~~~gdyd~Aiely~kaL~~dP~n~~  137 (822)
T PRK14574        113 RNEKRWDQALALWQSSLKKDPTNPD  137 (822)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHH
Confidence            9999999999999999999999863

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=91.66  E-value=0.71  Score=33.47  Aligned_cols=35  Identities=20%  Similarity=0.207  Sum_probs=28.3

Q ss_pred             HHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc
Q 015659          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE  350 (403)
Q Consensus       316 ~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~  350 (403)
                      +.|..+-..|-.+=+.|+|+.|+..|++|+.+|..
T Consensus         3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~   37 (69)
T PF04212_consen    3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQ   37 (69)
T ss_dssp             HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            44556666677777899999999999999999854

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=91.59  E-value=0.57  Score=50.31  Aligned_cols=68  Identities=13%  Similarity=0.181  Sum_probs=58.6

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      +.-.+|.+|-.|+|+.+...+.-|+.....            ..+..-.++++|-||.++|+|++|..++-+++..+|.|
T Consensus       273 l~~LAn~fyfK~dy~~v~~la~~ai~~t~~------------~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~  340 (1018)
T KOG2002|consen  273 LNHLANHFYFKKDYERVWHLAEHAIKNTEN------------KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN  340 (1018)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhhhh------------hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC
Confidence            345689999999999999999999997422            45566688999999999999999999999999999887

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.56  E-value=0.91  Score=45.11  Aligned_cols=87  Identities=18%  Similarity=0.245  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHH---------------------------------
Q 015659          314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQK---------------------------------  360 (403)
Q Consensus       314 ~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~---------------------------------  360 (403)
                      .+......-+.|-.+|+.|+|..|+..|+..|..+......+.+|..                                 
T Consensus       200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~  279 (422)
T PF06957_consen  200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQ  279 (422)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhH
Confidence            34444444456999999999999999999999876432222221111                                 


Q ss_pred             -------------HHHHHHHHhhhHHHH-HHHHccCHHHHHHHHHHHHhccccc
Q 015659          361 -------------LVKSLRVSCWLNSAA-CCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       361 -------------~~~~~~~~~~~N~a~-c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                                   .+++....+-++.|. ..+|.++|..|-..|++.|++.|..
T Consensus       280 kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~  333 (422)
T PF06957_consen  280 KRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP  333 (422)
T ss_dssp             HHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence                         123333334444443 3468899999999999999998864

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=90.94  E-value=0.2  Score=35.49  Aligned_cols=31  Identities=16%  Similarity=0.179  Sum_probs=28.6

Q ss_pred             hHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          371 LNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       371 ~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      +++|..+++.++|++|+..++++|+.+|.|.
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~   31 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNP   31 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHH
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Confidence            4689999999999999999999999999875

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=90.78  E-value=0.73  Score=44.61  Aligned_cols=67  Identities=18%  Similarity=0.226  Sum_probs=54.8

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp  398 (403)
                      ....|.-++..|++++|+..|.+++......           ......++.++|.|++.+|++++|+...++++...|
T Consensus       151 ~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~-----------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         151 VHAVAHVLEMQGRFKEGIAFMESWRDTWDCS-----------SMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhhhccCCC-----------cchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            4556888999999999999999999864321           123345778999999999999999999999987766

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK15331 chaperone protein SicA; Provisional

Probab=90.62  E-value=0.91  Score=39.04  Aligned_cols=57  Identities=14%  Similarity=0.089  Sum_probs=45.0

Q ss_pred             HhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659          324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIV  395 (403)
Q Consensus       324 ~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~  395 (403)
                      .|--+=..++|++|+..|..|..+-..++.               -...++.||+++++...|+.....|++
T Consensus        77 Laa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~---------------p~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331         77 LAAVCQLKKQFQKACDLYAVAFTLLKNDYR---------------PVFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccCCCC---------------ccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence            344445667999999999999887444432               357799999999999999999888887

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.34  E-value=1.6  Score=32.33  Aligned_cols=60  Identities=17%  Similarity=0.104  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc-CCCCChHHHHHHHHHHHHhhhHHH
Q 015659          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE-DGSFVDDEQKLVKSLRVSCWLNSA  374 (403)
Q Consensus       315 ~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~-~~~~~~~~~~~~~~~~~~~~~N~a  374 (403)
                      ++.+..+-.+|.+.=+.|+|..|+..|.+|++.|.. ....+++.....-..++.=|+++|
T Consensus         3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~Ra   63 (75)
T cd02678           3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEYLDRA   63 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHH
Confidence            456777777888888999999999999999998854 111222233333333444455554

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=90.21  E-value=0.44  Score=47.27  Aligned_cols=61  Identities=16%  Similarity=0.186  Sum_probs=51.5

Q ss_pred             hhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       325 Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      ||-+=-++++++|+..|++|+++               ++-...++.=|+.=|+.|++-..||..++.|++++|.+
T Consensus       337 aNYYSlr~eHEKAv~YFkRALkL---------------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D  397 (559)
T KOG1155|consen  337 ANYYSLRSEHEKAVMYFKRALKL---------------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD  397 (559)
T ss_pred             hhHHHHHHhHHHHHHHHHHHHhc---------------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh
Confidence            88887888999999999999997               44456677888888888888888888888888888864

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.13  E-value=2  Score=31.70  Aligned_cols=60  Identities=18%  Similarity=0.200  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc-CCCCChHHHHHHHHHHHHhhhHHH
Q 015659          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE-DGSFVDDEQKLVKSLRVSCWLNSA  374 (403)
Q Consensus       315 ~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~-~~~~~~~~~~~~~~~~~~~~~N~a  374 (403)
                      +..+..+-..|.+.=+.|+|..|+..|..|+..|.. ....+++.....-.-++.-|.++|
T Consensus         3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~yl~Ra   63 (75)
T cd02656           3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKEYLDRA   63 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence            345556666777777889999999999999998855 222222333333333444555554

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=89.87  E-value=0.63  Score=43.67  Aligned_cols=66  Identities=18%  Similarity=0.215  Sum_probs=45.6

Q ss_pred             HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      ....-+++.+++.++.....++...-..             +-...++.-+|.++.+.|++++|+..+.+||+++|.|.
T Consensus       115 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~-------------~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~  180 (280)
T PF13429_consen  115 SALQLYYRLGDYDEAEELLEKLEELPAA-------------PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDP  180 (280)
T ss_dssp             ---H-HHHTT-HHHHHHHHHHHHH-T----------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhccCC-------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence            3444567788888888888887753111             11245788899999999999999999999999999875

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=89.64  E-value=0.8  Score=28.84  Aligned_cols=33  Identities=21%  Similarity=0.213  Sum_probs=26.9

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE  350 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~  350 (403)
                      +..+...|+.++..|+|.+|...|++++.+...
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~   34 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRER   34 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence            456778899999999999999999999998654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=89.11  E-value=0.76  Score=50.04  Aligned_cols=65  Identities=2%  Similarity=-0.076  Sum_probs=43.5

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      +...|.-+...|+|.+|+..|+++++.-...               ..++.=+|..+.+++++.+|+..+.+++..+|.+
T Consensus       105 llalA~ly~~~gdyd~Aiely~kaL~~dP~n---------------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~  169 (822)
T PRK14574        105 LASAARAYRNEKRWDQALALWQSSLKKDPTN---------------PDLISGMIMTQADAGRGGVVLKQATELAERDPTV  169 (822)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcch
Confidence            3444666677899999999999999962211               1222344666667777777777777777666653

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=89.10  E-value=0.52  Score=44.83  Aligned_cols=60  Identities=13%  Similarity=0.160  Sum_probs=49.2

Q ss_pred             HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      ..|..+|=.++-+.|++.|++.+.+-.+.               ..+++|+++|.+--++++-++-...+||..-
T Consensus       329 cia~~yfY~~~PE~AlryYRRiLqmG~~s---------------peLf~NigLCC~yaqQ~D~~L~sf~RAlsta  388 (478)
T KOG1129|consen  329 CIAVGYFYDNNPEMALRYYRRILQMGAQS---------------PELFCNIGLCCLYAQQIDLVLPSFQRALSTA  388 (478)
T ss_pred             eeeeccccCCChHHHHHHHHHHHHhcCCC---------------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhc
Confidence            34677888888888888888888874333               2499999999999999999999999998763

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=88.87  E-value=0.98  Score=27.19  Aligned_cols=29  Identities=24%  Similarity=0.288  Sum_probs=25.5

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADC  347 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~  347 (403)
                      +.+-..|..+.+.|++.+|+..|++|+++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~   30 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            34556788999999999999999999997

...

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=88.75  E-value=1.3  Score=47.22  Aligned_cols=82  Identities=15%  Similarity=-0.009  Sum_probs=55.9

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHH-----H-HHHHHHHHHhhhHHHHH--------------
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDE-----Q-KLVKSLRVSCWLNSAAC--------------  376 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~-----~-~~~~~~~~~~~~N~a~c--------------  376 (403)
                      .+.++-..||.+|-+|+++.|.+....+|+.-   +.....-     . +..-.+...+..=+.++              
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd---p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~la  214 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQD---PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLA  214 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence            37788899999999999999999999999973   2222211     0 01112222233333333              


Q ss_pred             --HHHccCHHHHHHHHHHHHhcccccC
Q 015659          377 --CLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       377 --~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                        ..++++|.+|+-++++||+.+|.|-
T Consensus       215 dls~~~~~i~qA~~cy~rAI~~~p~n~  241 (895)
T KOG2076|consen  215 DLSEQLGNINQARYCYSRAIQANPSNW  241 (895)
T ss_pred             HHHHhcccHHHHHHHHHHHHhcCCcch
Confidence              3457789999999999999999873

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.70  E-value=0.29  Score=46.48  Aligned_cols=55  Identities=22%  Similarity=0.248  Sum_probs=40.3

Q ss_pred             cHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccCC
Q 015659          333 KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAARG  402 (403)
Q Consensus       333 ~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~~  402 (403)
                      ++..|...|+....-+    +.           ...+++-+|.|++.+++|++|.....+||+.+|.+.+
T Consensus       182 ~~~~A~y~f~El~~~~----~~-----------t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d  236 (290)
T PF04733_consen  182 KYQDAFYIFEELSDKF----GS-----------TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD  236 (290)
T ss_dssp             CCCHHHHHHHHHHCCS-----------------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH
T ss_pred             hHHHHHHHHHHHHhcc----CC-----------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH
Confidence            6777888887743321    11           1356778999999999999999999999999998753

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=88.30  E-value=0.97  Score=40.64  Aligned_cols=69  Identities=14%  Similarity=0.050  Sum_probs=51.9

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      |.-+-++|+-+=.-|-+..|.--+.+++.+               ++.....++-+.+-+..-++|+.|.+..+-+|++|
T Consensus        65 A~l~fERGvlYDSlGL~~LAR~DftQaLai---------------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD  129 (297)
T COG4785          65 AQLLFERGVLYDSLGLRALARNDFSQALAI---------------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD  129 (297)
T ss_pred             HHHHHHhcchhhhhhHHHHHhhhhhhhhhc---------------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC
Confidence            334445555555555666666667777776               44455688889999999999999999999999999


Q ss_pred             cccC
Q 015659          398 EAAR  401 (403)
Q Consensus       398 p~~~  401 (403)
                      |++.
T Consensus       130 p~y~  133 (297)
T COG4785         130 PTYN  133 (297)
T ss_pred             Ccch
Confidence            9863

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.22  E-value=1.6  Score=41.97  Aligned_cols=65  Identities=14%  Similarity=0.151  Sum_probs=47.9

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp  398 (403)
                      +..-..+.-.|.+--|++|+..|++.+.-               .+..+.+--|+|+||.|+.-|+-+-.-..--|+--|
T Consensus       152 EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---------------n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~p  216 (557)
T KOG3785|consen  152 EDQLSLASVHYMRMHYQEAIDVYKRVLQD---------------NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFP  216 (557)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHhc---------------ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCC
Confidence            34445677778888999999999998875               455677889999999999887766544443344444

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=88.21  E-value=1.9  Score=40.46  Aligned_cols=51  Identities=18%  Similarity=0.210  Sum_probs=45.1

Q ss_pred             CCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          351 DGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      ...|-+++.+.+..+..+++.-.|-.|++.+.+.+|+..|.++|.+||-+.
T Consensus       263 ~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e  313 (361)
T COG3947         263 DYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSE  313 (361)
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhh
Confidence            445667788888999999999999999999999999999999999999763

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=87.91  E-value=2.6  Score=35.19  Aligned_cols=73  Identities=11%  Similarity=0.133  Sum_probs=53.3

Q ss_pred             ccccCchHHH--HHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCH
Q 015659          306 PWEMNNQGKI--EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY  383 (403)
Q Consensus       306 ~~~m~~~e~~--~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~  383 (403)
                      .|-....+.+  .....+...+..+...|+|..|++.+++++..               .+..-.++.-+-.||..+|++
T Consensus        48 ~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~---------------dP~~E~~~~~lm~~~~~~g~~  112 (146)
T PF03704_consen   48 EWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL---------------DPYDEEAYRLLMRALAAQGRR  112 (146)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---------------STT-HHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---------------CCCCHHHHHHHHHHHHHCcCH
Confidence            4554444443  34556677788888999999999999999998               334455788888999999999


Q ss_pred             HHHHHHHHHH
Q 015659          384 QGAIELCSKV  393 (403)
Q Consensus       384 ~~ai~~~~~a  393 (403)
                      ..|+..+.+.
T Consensus       113 ~~A~~~Y~~~  122 (146)
T PF03704_consen  113 AEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998876655

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=87.70  E-value=0.8  Score=29.82  Aligned_cols=27  Identities=11%  Similarity=0.007  Sum_probs=24.0

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADC  347 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~  347 (403)
                      ....|..+...|++++|++.|+++++.
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            345688889999999999999999997

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=87.28  E-value=2.1  Score=40.21  Aligned_cols=81  Identities=12%  Similarity=0.072  Sum_probs=61.9

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhcc----------------CCCCChHHHH------HHHHHHHHhhhHHHHHHH
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSE----------------DGSFVDDEQK------LVKSLRVSCWLNSAACCL  378 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~----------------~~~~~~~~~~------~~~~~~~~~~~N~a~c~l  378 (403)
                      .--.|-.++..+++..|...|.+|+++.-.                +...+.+-..      ..++-.+...+=+|..++
T Consensus       159 W~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~af  238 (287)
T COG4235         159 WDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAF  238 (287)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            345688999999999999999999997522                2222222222      234445567777999999


Q ss_pred             HccCHHHHHHHHHHHHhcccccC
Q 015659          379 KLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       379 kl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      ..++|.+|+..-...|.+.|.|+
T Consensus       239 e~g~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         239 EQGDYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             HcccHHHHHHHHHHHHhcCCCCC
Confidence            99999999999999999999875

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.14  E-value=3  Score=42.73  Aligned_cols=83  Identities=17%  Similarity=0.085  Sum_probs=63.3

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      .+-+.+.-+...|+|.+|++.-++|++++...-...+...++++.....+..-+|-++..+|+-.+|...+...|..+|.
T Consensus       177 l~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~  256 (652)
T KOG2376|consen  177 LLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA  256 (652)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC
Confidence            34556777788999999999999998877442222222234445556677888999999999999999999999999988


Q ss_pred             cCC
Q 015659          400 ARG  402 (403)
Q Consensus       400 ~~~  402 (403)
                      +..
T Consensus       257 D~~  259 (652)
T KOG2376|consen  257 DEP  259 (652)
T ss_pred             Cch
Confidence            753

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=86.90  E-value=1.7  Score=39.99  Aligned_cols=55  Identities=24%  Similarity=0.279  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHH-ccCHHHHHHHHHHHHh
Q 015659          334 YERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK-LKDYQGAIELCSKVIV  395 (403)
Q Consensus       334 ~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lk-l~~~~~ai~~~~~aL~  395 (403)
                      -++|...|++|+.+....-+++       ++++..+.+|.|..|.. +++..+|+..+.+|+.
T Consensus       142 ~~~a~~aY~~A~~~a~~~L~~~-------~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd  197 (236)
T PF00244_consen  142 AEKALEAYEEALEIAKKELPPT-------HPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD  197 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTT-------SHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHhcccCCC-------CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4789999999999986633344       78899999999998855 8999999999999875

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=86.81  E-value=1.1  Score=40.49  Aligned_cols=62  Identities=21%  Similarity=0.318  Sum_probs=51.3

Q ss_pred             hHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccCC
Q 015659          326 NLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAARG  402 (403)
Q Consensus       326 n~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~~  402 (403)
                      ..+++.++++.|...|.+|+.+...+               ..-+..++-.+.|.+++..|...++++|++||.+.+
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w---------------~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEW---------------AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchh---------------hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            34678999999999999999973221               335677788889999999999999999999998753

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.72  E-value=3.2  Score=42.58  Aligned_cols=70  Identities=24%  Similarity=0.293  Sum_probs=48.7

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHH-----------H---------HHHHHHhhhHHHHHHHHc
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKL-----------V---------KSLRVSCWLNSAACCLKL  380 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~-----------~---------~~~~~~~~~N~a~c~lkl  380 (403)
                      +.-+|..+|+.++|.+|+..|+..++-    ...+.++..+           .         ..--..+++|.|-.++-.
T Consensus       113 l~L~AQvlYrl~~ydealdiY~~L~kn----~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~  188 (652)
T KOG2376|consen  113 LELRAQVLYRLERYDEALDIYQHLAKN----NSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIEN  188 (652)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhc
Confidence            344788999999999999999877552    1111111110           0         001234789999999999


Q ss_pred             cCHHHHHHHHHHHH
Q 015659          381 KDYQGAIELCSKVI  394 (403)
Q Consensus       381 ~~~~~ai~~~~~aL  394 (403)
                      ++|.+|++...+|+
T Consensus       189 gky~qA~elL~kA~  202 (652)
T KOG2376|consen  189 GKYNQAIELLEKAL  202 (652)
T ss_pred             ccHHHHHHHHHHHH
Confidence            99999999888884

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=86.69  E-value=4.3  Score=32.98  Aligned_cols=68  Identities=16%  Similarity=0.166  Sum_probs=53.4

Q ss_pred             hhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       325 Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      ...+-+.|+|..++..=.+||.|++-.....+++-    ++-+..-.|+|+++--+++.++|+...+.+-++
T Consensus        62 s~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG----klWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   62 SGALAGLGRYDECLQSADRALRYFNRRGELHQDEG----KLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH----HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHHHhhccccccccc----hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            44556889999999999999999988777776664    345778899999999999999999999887553

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.59  E-value=1.6  Score=40.08  Aligned_cols=66  Identities=9%  Similarity=0.070  Sum_probs=49.3

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc---CHHHHHHHHHHHHhc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK---DYQGAIELCSKVIVE  396 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~---~~~~ai~~~~~aL~~  396 (403)
                      ...+.++-+|..++|++|.-+|++.+-.               ++....++..+|-.+.-++   +..-|..++.++|++
T Consensus       156 AW~eLaeiY~~~~~f~kA~fClEE~ll~---------------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  156 AWHELAEIYLSEGDFEKAAFCLEELLLI---------------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             HHHHHHHHHHhHhHHHHHHHHHHHHHHc---------------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            3456678889999999999999999886               4444556666666655554   677888889999988


Q ss_pred             cccc
Q 015659          397 REAA  400 (403)
Q Consensus       397 dp~~  400 (403)
                      +|.|
T Consensus       221 ~~~~  224 (289)
T KOG3060|consen  221 NPKN  224 (289)
T ss_pred             ChHh
Confidence            8843

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=86.41  E-value=6.4  Score=29.00  Aligned_cols=36  Identities=25%  Similarity=0.252  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc
Q 015659          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE  350 (403)
Q Consensus       315 ~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~  350 (403)
                      +..|..+...|..+=+.|+|..|+..|.+|++.|..
T Consensus         5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~   40 (77)
T smart00745        5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLE   40 (77)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            345556666677777789999999999999998854

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=85.85  E-value=3.5  Score=36.29  Aligned_cols=65  Identities=17%  Similarity=0.227  Sum_probs=53.7

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      .-..||.+-..|+|.+|...|++++.-+-..   +           ..+++-+|.+++.++++..|....+++.+.+|.
T Consensus        92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~---d-----------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa  156 (251)
T COG4700          92 RYRLANALAELGRYHEAVPHYQQALSGIFAH---D-----------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA  156 (251)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHhccccCC---C-----------HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence            3456899999999999999999999853221   1           347788999999999999999999999998875

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=85.62  E-value=1.6  Score=47.64  Aligned_cols=51  Identities=14%  Similarity=0.035  Sum_probs=26.9

Q ss_pred             hhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659          329 FKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIV  395 (403)
Q Consensus       329 fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~  395 (403)
                      =+.|++++|...|++++++               ++....+++|+|-.|... +.++|+..+.+|++
T Consensus       127 dk~g~~~ka~~~yer~L~~---------------D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~  177 (906)
T PRK14720        127 AKLNENKKLKGVWERLVKA---------------DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIY  177 (906)
T ss_pred             HHcCChHHHHHHHHHHHhc---------------CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence            3445555555555555554               222344555555555555 55555555555544

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.61  E-value=5  Score=29.72  Aligned_cols=35  Identities=20%  Similarity=0.052  Sum_probs=29.0

Q ss_pred             HHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc
Q 015659          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE  350 (403)
Q Consensus       316 ~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~  350 (403)
                      +.+..+-..|++.=..|+|++|+..|..|++++..
T Consensus         4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~   38 (75)
T cd02680           4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN   38 (75)
T ss_pred             HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence            45556666777777899999999999999999866

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=85.49  E-value=2.5  Score=41.54  Aligned_cols=68  Identities=16%  Similarity=0.092  Sum_probs=56.2

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      .+.-+||-+...++.+.|+-.|+.|..+               .+.+..+|--+-.|||..+.+.+|...++.++..=|.
T Consensus       336 alilKG~lL~~~~R~~~A~IaFR~Aq~L---------------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~  400 (564)
T KOG1174|consen  336 ALILKGRLLIALERHTQAVIAFRTAQML---------------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQN  400 (564)
T ss_pred             HHHhccHHHHhccchHHHHHHHHHHHhc---------------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc
Confidence            3455677777777787787777777776               5666789999999999999999999999999998888


Q ss_pred             cCC
Q 015659          400 ARG  402 (403)
Q Consensus       400 ~~~  402 (403)
                      ||.
T Consensus       401 sA~  403 (564)
T KOG1174|consen  401 SAR  403 (564)
T ss_pred             chh
Confidence            763

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=85.08  E-value=1.6  Score=41.19  Aligned_cols=75  Identities=15%  Similarity=0.022  Sum_probs=51.8

Q ss_pred             chHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHH
Q 015659          311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELC  390 (403)
Q Consensus       311 ~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~  390 (403)
                      +..+.+....+| .+...++.|+.++|.+.|+-|+.+-..               ...++.-+.+-.---++.-+|-.++
T Consensus       110 pa~~kEA~~Al~-~A~~~~~~Gk~ekA~~lfeHAlalaP~---------------~p~~L~e~G~f~E~~~~iv~ADq~Y  173 (472)
T KOG3824|consen  110 PAKVKEAILALK-AAGRSRKDGKLEKAMTLFEHALALAPT---------------NPQILIEMGQFREMHNEIVEADQCY  173 (472)
T ss_pred             chhhHHHHHHHH-HHHHHHhccchHHHHHHHHHHHhcCCC---------------CHHHHHHHhHHHHhhhhhHhhhhhh
Confidence            333444444444 577899999999999999999997322               1234444554444445666778888


Q ss_pred             HHHHhcccccC
Q 015659          391 SKVIVEREAAR  401 (403)
Q Consensus       391 ~~aL~~dp~~~  401 (403)
                      .+||.++|+|.
T Consensus       174 ~~ALtisP~ns  184 (472)
T KOG3824|consen  174 VKALTISPGNS  184 (472)
T ss_pred             heeeeeCCCch
Confidence            99999999874

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=85.07  E-value=0.89  Score=32.82  Aligned_cols=29  Identities=17%  Similarity=0.256  Sum_probs=26.1

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          373 SAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       373 ~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      ++..|++.++|..|+..++++|.++|.+.
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~   29 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPDDP   29 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcccc
Confidence            35678999999999999999999999875

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.96  E-value=4.7  Score=37.48  Aligned_cols=70  Identities=13%  Similarity=0.172  Sum_probs=58.2

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      .-+.+-.+|+.|+|..|...|..-++-+.....            ....++=|..|++.+++|.+|......+..-.|.+
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~------------~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s  211 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY------------TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS  211 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc------------cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC
Confidence            778899999999999999999999887654332            22366779999999999999999999999888876


Q ss_pred             CC
Q 015659          401 RG  402 (403)
Q Consensus       401 ~~  402 (403)
                      ..
T Consensus       212 ~K  213 (262)
T COG1729         212 PK  213 (262)
T ss_pred             CC
Confidence            53

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=84.78  E-value=2.8  Score=41.27  Aligned_cols=61  Identities=15%  Similarity=0.059  Sum_probs=46.6

Q ss_pred             hhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       325 Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      +.-+-.+|+++.++..-++++.....                ..++.-++..+-..+++++|+.++.+||.+||.|-
T Consensus       445 AEL~~~Eg~~~D~i~LLe~~L~~~~D----------------~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~  505 (564)
T KOG1174|consen  445 AELCQVEGPTKDIIKLLEKHLIIFPD----------------VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK  505 (564)
T ss_pred             HHHHHhhCccchHHHHHHHHHhhccc----------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence            33444566666666666666665332                34888899999999999999999999999999874

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=84.69  E-value=4.1  Score=36.33  Aligned_cols=69  Identities=16%  Similarity=0.101  Sum_probs=48.3

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc-----------CHHHHHHH
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-----------DYQGAIEL  389 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~-----------~~~~ai~~  389 (403)
                      .-..|..+|+.++|..|+..|++-++.....+            ...-+++.++.|++++.           ...+|+..
T Consensus        45 ~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~------------~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~  112 (203)
T PF13525_consen   45 QLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP------------KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEE  112 (203)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T------------THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc------------chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHH
Confidence            34568899999999999999999998744322            12235566777766653           34588999


Q ss_pred             HHHHHhcccccC
Q 015659          390 CSKVIVEREAAR  401 (403)
Q Consensus       390 ~~~aL~~dp~~~  401 (403)
                      ++..+..-|.+.
T Consensus       113 ~~~li~~yP~S~  124 (203)
T PF13525_consen  113 FEELIKRYPNSE  124 (203)
T ss_dssp             HHHHHHH-TTST
T ss_pred             HHHHHHHCcCch
Confidence            999999888764

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=84.58  E-value=5.4  Score=33.50  Aligned_cols=67  Identities=10%  Similarity=0.146  Sum_probs=52.6

Q ss_pred             HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccC---------------HHHHH
Q 015659          323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD---------------YQGAI  387 (403)
Q Consensus       323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~---------------~~~ai  387 (403)
                      ..|-.+|++++|..|+..|.+=|++-...+..+            =+++-+++|++++..               ...|+
T Consensus        52 ~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd------------Ya~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~  119 (142)
T PF13512_consen   52 DLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD------------YAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAF  119 (142)
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc------------HHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHH
Confidence            558889999999999999999999633332222            255568888888876               88999


Q ss_pred             HHHHHHHhcccccC
Q 015659          388 ELCSKVIVEREAAR  401 (403)
Q Consensus       388 ~~~~~aL~~dp~~~  401 (403)
                      .+..+++..-|.+.
T Consensus       120 ~~f~~lv~~yP~S~  133 (142)
T PF13512_consen  120 RDFEQLVRRYPNSE  133 (142)
T ss_pred             HHHHHHHHHCcCCh
Confidence            99999999888763

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=84.42  E-value=9.8  Score=31.70  Aligned_cols=74  Identities=16%  Similarity=0.119  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHH
Q 015659          314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV  393 (403)
Q Consensus       314 ~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~a  393 (403)
                      +...+...-......+..+++..+...+.+.+.-...            ........+.+|.+++..+++++|+...+++
T Consensus         7 ~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~   74 (145)
T PF09976_consen    7 QAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPS------------SPYAALAALQLAKAAYEQGDYDEAKAALEKA   74 (145)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3455666666677777788888877767666664221            2244567888999999999999999999999


Q ss_pred             Hhcccc
Q 015659          394 IVEREA  399 (403)
Q Consensus       394 L~~dp~  399 (403)
                      +...|.
T Consensus        75 ~~~~~d   80 (145)
T PF09976_consen   75 LANAPD   80 (145)
T ss_pred             HhhCCC
Confidence            997644

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=83.97  E-value=0.89  Score=45.35  Aligned_cols=64  Identities=13%  Similarity=0.098  Sum_probs=56.9

Q ss_pred             HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      .++-.++|.++|..|+.-..+||++               .+-++++|.-+|++.+++++|.+|+.+..++..+.|..-
T Consensus        43 nRa~a~lK~e~~~~Al~Da~kaie~---------------dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~  106 (476)
T KOG0376|consen   43 NRALAHLKVESFGGALHDALKAIEL---------------DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDP  106 (476)
T ss_pred             hhhhhheeechhhhHHHHHHhhhhc---------------CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcH
Confidence            3456678999999999999999997               566789999999999999999999999999999988753

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.85  E-value=12  Score=28.07  Aligned_cols=63  Identities=17%  Similarity=0.035  Sum_probs=45.2

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc-----C-CCCChHHHHHHHHHHHHhhhHHHHHHHHc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE-----D-GSFVDDEQKLVKSLRVSCWLNSAACCLKL  380 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~-----~-~~~~~~~~~~~~~~~~~~~~N~a~c~lkl  380 (403)
                      |-..-+.|-.+=..|+-+.|+..|+++++.|..     . .....++|..++.+..+...|+..+--.+
T Consensus         8 A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL   76 (79)
T cd02679           8 AFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRL   76 (79)
T ss_pred             HHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444444444558999999999999999954     1 13345788888888888888888765544

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=83.47  E-value=3.4  Score=40.54  Aligned_cols=64  Identities=16%  Similarity=0.243  Sum_probs=54.2

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      +.+.|-.+...|++..|++.|.++.+|+.+            .+.-+..+.|+-.+-+-+++|.....+.++|-+.
T Consensus       153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs------------~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st  216 (466)
T KOG0686|consen  153 LEDLGDHYLDCGQLDNALRCYSRARDYCTS------------AKHVINMCLNLILVSIYMGNWGHVLSYISKAEST  216 (466)
T ss_pred             HHHHHHHHHHhccHHHHHhhhhhhhhhhcc------------hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence            446677888899999999999999998765            3445678889999999999999999999998765

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=83.23  E-value=3.6  Score=37.87  Aligned_cols=61  Identities=20%  Similarity=0.170  Sum_probs=47.2

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      +...|-.+-+.|++..|...|.+|+++....               ...++|++.-++=.+++..|......+-..
T Consensus       137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~---------------p~~~nNlgms~~L~gd~~~A~~lll~a~l~  197 (257)
T COG5010         137 WNLLGAALDQLGRFDEARRAYRQALELAPNE---------------PSIANNLGMSLLLRGDLEDAETLLLPAYLS  197 (257)
T ss_pred             hhHHHHHHHHccChhHHHHHHHHHHHhccCC---------------chhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            4466888889999999999999999984332               346778888888888888877777666444

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.20  E-value=1.7  Score=41.92  Aligned_cols=54  Identities=26%  Similarity=0.357  Sum_probs=42.0

Q ss_pred             hhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHH
Q 015659          325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV  393 (403)
Q Consensus       325 Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~a  393 (403)
                      |-=+|..|+|++|+..|+-+..-  .+.+             ..+..|+|-|++-+|.|.+|-....++
T Consensus        64 a~C~fhLgdY~~Al~~Y~~~~~~--~~~~-------------~el~vnLAcc~FyLg~Y~eA~~~~~ka  117 (557)
T KOG3785|consen   64 AHCYFHLGDYEEALNVYTFLMNK--DDAP-------------AELGVNLACCKFYLGQYIEAKSIAEKA  117 (557)
T ss_pred             HHHHHhhccHHHHHHHHHHHhcc--CCCC-------------cccchhHHHHHHHHHHHHHHHHHHhhC
Confidence            55679999999999999877762  1111             237899999999999999998766554

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.97  E-value=7  Score=42.04  Aligned_cols=86  Identities=20%  Similarity=0.275  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc---CCCCChHHHH------------------------------
Q 015659          314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE---DGSFVDDEQK------------------------------  360 (403)
Q Consensus       314 ~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~---~~~~~~~~~~------------------------------  360 (403)
                      ++....+.-+.|=.+++.|+|.+|+.+|+.+|-.+..   +....+++.+                              
T Consensus       987 ~l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~ 1066 (1202)
T KOG0292|consen  987 KLSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQ 1066 (1202)
T ss_pred             cHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHH
Confidence            3677777888899999999999999999988765422   1111111110                              


Q ss_pred             ----------HHHHHHHHhhhHHH-HHHHHccCHHHHHHHHHHHHhcccc
Q 015659          361 ----------LVKSLRVSCWLNSA-ACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       361 ----------~~~~~~~~~~~N~a-~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                                .++++...+-+..| ..++|++++..|-..|.+.|++-|.
T Consensus      1067 ~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~ 1116 (1202)
T KOG0292|consen 1067 LELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPS 1116 (1202)
T ss_pred             HHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Confidence                      12222222222222 3678999999999999999999874

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=82.87  E-value=3.4  Score=42.58  Aligned_cols=58  Identities=19%  Similarity=0.176  Sum_probs=44.0

Q ss_pred             hhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          329 FKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       329 fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      ...|+|++|+..-.+....+.               -+...+--+|.|++|+|++++|...+.+.|..+|.|.
T Consensus        15 ~e~g~~~~AL~~L~~~~~~I~---------------Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~   72 (517)
T PF12569_consen   15 EEAGDYEEALEHLEKNEKQIL---------------DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY   72 (517)
T ss_pred             HHCCCHHHHHHHHHhhhhhCC---------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence            345677776666555444321               1356778899999999999999999999999999885

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=82.56  E-value=4.4  Score=41.33  Aligned_cols=64  Identities=25%  Similarity=0.373  Sum_probs=51.6

Q ss_pred             HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      ..|.-+..+|+.+.|+..|++|+..        +   ...+++...|+..++.|++-+.+|.+|..+..+.++.+
T Consensus       272 ~~gR~~~~~g~~~~Ai~~~~~a~~~--------q---~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s  335 (468)
T PF10300_consen  272 FEGRLERLKGNLEEAIESFERAIES--------Q---SEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES  335 (468)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHhccc--------h---hhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence            5566777888889999999888842        1   22356677899999999999999999999999888754

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=82.35  E-value=5.7  Score=36.65  Aligned_cols=68  Identities=12%  Similarity=0.036  Sum_probs=50.8

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccC------------------
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD------------------  382 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~------------------  382 (403)
                      .-..|..+|+.++|..|+..|++.++.....+..            .-++..++.|++.++.                  
T Consensus        72 ~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~------------~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~  139 (243)
T PRK10866         72 QLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI------------DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQH  139 (243)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch------------HHHHHHHHHhhhhcchhhhhhccCCCccccCHHH
Confidence            3467889999999999999999999975443322            2256667777765541                  


Q ss_pred             HHHHHHHHHHHHhccccc
Q 015659          383 YQGAIELCSKVIVEREAA  400 (403)
Q Consensus       383 ~~~ai~~~~~aL~~dp~~  400 (403)
                      -.+|+..+.+.++.-|.+
T Consensus       140 ~~~A~~~~~~li~~yP~S  157 (243)
T PRK10866        140 ARAAFRDFSKLVRGYPNS  157 (243)
T ss_pred             HHHHHHHHHHHHHHCcCC
Confidence            257889999999998865

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=82.19  E-value=9.3  Score=31.10  Aligned_cols=65  Identities=15%  Similarity=0.122  Sum_probs=50.6

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIV  395 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~  395 (403)
                      ..+...|..+-..|++++|+...++++.-...            .++...+...+|.|+..++++++|+..+-.+|.
T Consensus        39 ~a~i~lastlr~LG~~deA~~~L~~~~~~~p~------------~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   39 RALIQLASTLRNLGRYDEALALLEEALEEFPD------------DELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------------ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34556788888999999999999999875322            122345667789999999999999998887764

>TIGR00540 hemY_coli hemY protein

Probab=81.99  E-value=3.1  Score=41.47  Aligned_cols=83  Identities=11%  Similarity=0.011  Sum_probs=59.1

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCC-----------CChH----------HHHHHHHHHH--HhhhHHHH
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS-----------FVDD----------EQKLVKSLRV--SCWLNSAA  375 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~-----------~~~~----------~~~~~~~~~~--~~~~N~a~  375 (403)
                      .-.-..+..+...|+++.|....+++++....+..           ...+          .+.+..+...  .++..++.
T Consensus       264 ~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~  343 (409)
T TIGR00540       264 ALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQ  343 (409)
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence            33445678889999999999999999996433221           1111          1122233444  67778999


Q ss_pred             HHHHccCHHHHHHHHH--HHHhcccccC
Q 015659          376 CCLKLKDYQGAIELCS--KVIVEREAAR  401 (403)
Q Consensus       376 c~lkl~~~~~ai~~~~--~aL~~dp~~~  401 (403)
                      .++++++|++|..+.+  .+++.+|.+.
T Consensus       344 l~~~~~~~~~A~~~le~a~a~~~~p~~~  371 (409)
T TIGR00540       344 LLMKHGEFIEAADAFKNVAACKEQLDAN  371 (409)
T ss_pred             HHHHcccHHHHHHHHHHhHHhhcCCCHH
Confidence            9999999999999999  6888888653

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=81.79  E-value=7.2  Score=38.47  Aligned_cols=67  Identities=12%  Similarity=0.028  Sum_probs=38.7

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      ....||.++-...|++||..+++-+.+...        ........-.||+ ++.+|-.++++.+|+..+.+.|++
T Consensus       278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqe--------L~DriGe~RacwS-Lgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQE--------LEDRIGELRACWS-LGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhhhHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHH
Confidence            334445554444455555444444444221        1111122233444 899999999999999999888765

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=81.64  E-value=1.5  Score=45.31  Aligned_cols=57  Identities=19%  Similarity=0.298  Sum_probs=42.9

Q ss_pred             hhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          329 FKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       329 fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      =..++|.+|+++|+.|+++               .+-+..++--+|.-+.+++++......=.+.|++.|++
T Consensus        86 R~dK~Y~eaiKcy~nAl~~---------------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~  142 (700)
T KOG1156|consen   86 RSDKKYDEAIKCYRNALKI---------------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ  142 (700)
T ss_pred             hhhhhHHHHHHHHHHHHhc---------------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Confidence            3557899999999999997               23335566667777778888877777777777777765

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=81.56  E-value=0.59  Score=33.24  Aligned_cols=26  Identities=35%  Similarity=0.396  Sum_probs=23.4

Q ss_pred             HHHccCHHHHHHHHHHHHhcccccCC
Q 015659          377 CLKLKDYQGAIELCSKVIVEREAARG  402 (403)
Q Consensus       377 ~lkl~~~~~ai~~~~~aL~~dp~~~~  402 (403)
                      +++.|+|.+|+..++++++.+|.|..
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~   26 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPE   26 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHH
Confidence            47889999999999999999998853

...

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=80.96  E-value=2  Score=45.05  Aligned_cols=64  Identities=14%  Similarity=0.148  Sum_probs=50.3

Q ss_pred             HHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       322 k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      -..|-.+.+.++++.|...|++|+.+               ++-+...++|++.+|+++++-.+|.....+||..+-.|
T Consensus       523 f~~G~~ALqlek~q~av~aF~rcvtL---------------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~  586 (777)
T KOG1128|consen  523 FGLGCAALQLEKEQAAVKAFHRCVTL---------------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH  586 (777)
T ss_pred             HhccHHHHHHhhhHHHHHHHHHHhhc---------------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC
Confidence            35577788889999999999999986               23334578888888888888888888888888776443

>smart00028 TPR Tetratricopeptide repeats

Probab=80.80  E-value=1.9  Score=24.28  Aligned_cols=27  Identities=33%  Similarity=0.429  Sum_probs=23.8

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADC  347 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~  347 (403)
                      ....|..++..++|+.|+..|+++++.
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            456788999999999999999999985

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=80.66  E-value=6.5  Score=37.60  Aligned_cols=90  Identities=16%  Similarity=0.092  Sum_probs=57.7

Q ss_pred             ccCchHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc----------CCCCChHHHH---------------HH
Q 015659          308 EMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE----------DGSFVDDEQK---------------LV  362 (403)
Q Consensus       308 ~m~~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~----------~~~~~~~~~~---------------~~  362 (403)
                      +++.++|+   ..+-+.|..+.+.|-|.+|-..|..-.+.-+.          .... +.||+               ..
T Consensus       100 dlT~~qr~---lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~-treW~KAId~A~~L~k~~~q~~  175 (389)
T COG2956         100 DLTFEQRL---LALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQA-TREWEKAIDVAERLVKLGGQTY  175 (389)
T ss_pred             CCchHHHH---HHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHcCCccc
Confidence            33445444   34455688888889898888888654442110          0000 11222               12


Q ss_pred             HHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          363 KSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       363 ~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      +-....+|.-+|+.++-..++++|+....+||+-||.+.
T Consensus       176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cv  214 (389)
T COG2956         176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCV  214 (389)
T ss_pred             hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccce
Confidence            344556788888888888899999999999999988764

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=80.30  E-value=2.4  Score=24.17  Aligned_cols=23  Identities=26%  Similarity=0.094  Sum_probs=20.7

Q ss_pred             hhhHHHHHHHHccCHHHHHHHHH
Q 015659          369 CWLNSAACCLKLKDYQGAIELCS  391 (403)
Q Consensus       369 ~~~N~a~c~lkl~~~~~ai~~~~  391 (403)
                      +++|+|..++.+|++.+|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            67899999999999999998765

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	403
3jym_A	377	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		2e-47
3jxv_A	356	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		4e-47
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		8e-41
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		2e-40
3o5d_A	264	Crystal Structure Of A Fragment Of Fkbp51 Comprisin		6e-26
1q1c_A	280	Crystal Structure Of N(1-260) Of Human Fkbp52 Lengt		1e-24
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		6e-23
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		3e-21
2lgo_A	130	Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prol		4e-16
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		4e-16
1r9h_A	135	Structural Genomics Of C.Elegans: Fkbp-Type Peptidy		8e-16
1r9h_A	135	Structural Genomics Of C.Elegans: Fkbp-Type Peptidy		9e-07
4drj_A	144	O-crystal Structure Of The Ppiase Domain Of Fkbp52,		3e-15
1n1a_A	140	Crystal Structure Of The N-Terminal Domain Of Human		3e-15
1rot_A	149	Structure Of Fkbp59-I, The N-Terminal Domain Of A 5		3e-15
4dz3_A	113	Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is		1e-14
2y78_A	133	Crystal Structure Of Bpss1823, A Mip-Like Chaperone		1e-14
2ke0_A	117	Solution Structure Of Peptidyl-Prolyl Cis-Trans Iso		1e-14
3vaw_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		2e-14
4ggq_C	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		2e-14
3uf8_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		2e-14
3uqa_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		2e-14
2ki3_A	126	Structural And Biochemical Characterization Of Fk50		3e-14
2ki3_A	126	Structural And Biochemical Characterization Of Fk50		4e-06
3o5e_A	144	Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144		5e-14
3o5e_A	144	Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144		3e-07
3o5g_A	128	Fk1 Domain Of Fkbp51, Crystal Form I Length = 128		5e-14
3o5g_A	128	Fk1 Domain Of Fkbp51, Crystal Form I Length = 128		2e-07
4drh_A	144	Co-crystal Structure Of The Ppiase Domain Of Fkbp51		6e-14
4drh_A	144	Co-crystal Structure Of The Ppiase Domain Of Fkbp51		2e-07
3o5l_A	128	Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Le		6e-14
3o5l_A	128	Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Le		2e-07
3uqb_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		1e-13
1yat_A	113	Improved Calcineurin Inhibition By Yeast Fkbp12-Dru		4e-13
4dz2_A	113	Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is		5e-12
2vn1_A	129	Crystal Structure Of The Fk506-Binding Domain Of Pl		7e-12
2vn1_A	129	Crystal Structure Of The Fk506-Binding Domain Of Pl		1e-07
2ofn_A	135	Solution Structure Of Fk506-Binding Domain (Fkbd)of		7e-12
2ofn_A	135	Solution Structure Of Fk506-Binding Domain (Fkbd)of		1e-07
1pbk_A	116	Homologous Domain Of Human Fkbp25 Length = 116		2e-11
1pbk_A	116	Homologous Domain Of Human Fkbp25 Length = 116		1e-05
3kz7_A	119	C-Terminal Domain Of Murine Fkbp25 Rapamycin Comple		4e-11
2pbc_A	102	Fk506-Binding Protein 2 Length = 102		4e-11
2dg9_A	107	Fk506-Binding Protein Mutant Wl59 Complexed With Ra		7e-11
1jvw_A	167	Trypanosoma Cruzi Macrophage Infectivity Potentiato		1e-10
1c9h_A	107	Crystal Structure Of Fkbp12.6 In Complex With Rapam		1e-10
1fkk_A	107	Atomic Structure Of Fkbp12, An Immunophilin Binding		1e-10
3uqi_A	108	Crystallographic Structure Of Fkbp12 From Aedes Aeg		2e-10
2dg4_A	107	Fk506-Binding Protein Mutant Wf59 Complexed With Ra		2e-10
1tco_C	107	Ternary Complex Of A Calcineurin A Fragment, Calcin		2e-10
3h9r_B	109	Crystal Structure Of The Kinase Domain Of Type I Ac		3e-10
2fap_A	107	The Structure Of The Immunophilin-Immunosuppressant		3e-10
2ppp_A	107	Crystal Structure Of E60q Mutant Of Fkbp12 Length =		4e-10
1fkb_A	107	Atomic Structure Of The Rapamycin Human Immunophili		6e-10
2ppo_A	107	Crystal Structure Of E60a Mutant Of Fkbp12 Length =		6e-10
1eym_A	107	Fk506 Binding Protein Mutant, Homodimeric Complex L		2e-09
1bkf_A	107	Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX		2e-09
1u79_A	129	Crystal Structure Of Atfkbp13 Length = 129		2e-09
1bl4_A	107	Fkbp Mutant F36v Complexed With Remodeled Synthetic		2e-09
1q6u_A	245	Crystal Structure Of Fkpa From Escherichia Coli Len		3e-09
1q6h_A	224	Crystal Structure Of A Truncated Form Of Fkpa From		3e-09
1fd9_A	213	Crystal Structure Of The Macrophage Infectivity Pot		1e-05
2uz5_A	137	Solution Structure Of The Fkbp-Domain Of Legionella		1e-05
2fbn_A	198	Plasmodium Falciparum Putative Fk506-Binding Protei		2e-05
4dip_A	125	Crystal Structure Of Human Peptidyl-Prolyl Cis-Tran		3e-05
3b7x_A	134	Crystal Structure Of Human Fk506-Binding Protein 6		3e-05
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		4e-05
4dt4_A	169	Crystal Structure Of The Ppiase-Chaperone Slpa With		1e-04

>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 377

Iteration: 1
 Score =  186 bits (472), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 132/337 (39%), Positives = 184/337 (54%), Gaps = 55/337 (16%)
Query: 35  LKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTF 94
           +KVGEE  +G  G+KKKLLK G  WDTPE GDEV +HY GTLLDG KFDS+RDR D   F
Sbjct: 16  MKVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKF 75
Query: 95  KLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
           KLG GQV  G D GI TMKK E A+  FT+P EL +G  G   ++P N+ +QF+VEL+SW
Sbjct: 76  KLGQGQVIKGWDQGIKTMKKGENAL--FTIPPELAYGESGSPPTIPANATLQFDVELLSW 133
Query: 154 ITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKD 213
            +V D++KDGGI KKIL++G++  +P D DEV VKY+  L DGT+V+K+  EGVEF +KD
Sbjct: 134 TSVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKS--EGVEFTVKD 191
Query: 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGF 273
                                           +   L +   TMKK E  ++ +  +YGF
Sbjct: 192 ------------------------------GHLCPALAKAVKTMKKGEKVLLAVKPQYGF 221
Query: 274 GNV--EAKRDLATIPSCAKLYYEVEMMDF----------------IKEKVPWEMNNQGKI 315
           G +   A  +   +P  A L  ++E++ +                +KE   +E  N+G +
Sbjct: 222 GEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAV 281
Query: 316 EAA--GRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350
                  K ++G +  K G  E+   ++    + V E
Sbjct: 282 VTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIE 318

>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 356

Iteration: 1
 Score =  185 bits (469), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 132/336 (39%), Positives = 183/336 (54%), Gaps = 55/336 (16%)
Query: 36  KVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFK 95
           KVGEE  +G  G+KKKLLK G  WDTPE GDEV +HY GTLLDG KFDS+RDR D   FK
Sbjct: 1   KVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFK 60
Query: 96  LGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWI 154
           LG GQV  G D GI TMKK E A+  FT+P EL +G  G   ++P N+ +QF+VEL+SW 
Sbjct: 61  LGQGQVIKGWDQGIKTMKKGENAL--FTIPPELAYGESGSPPTIPANATLQFDVELLSWT 118
Query: 155 TVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDV 214
           +V D++KDGGI KKIL++G++  +P D DEV VKY+  L DGT+V+K+  EGVEF +KD 
Sbjct: 119 SVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKS--EGVEFTVKD- 175
Query: 215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFG 274
                                          +   L +   TMKK E  ++ +  +YGFG
Sbjct: 176 -----------------------------GHLCPALAKAVKTMKKGEKVLLAVKPQYGFG 206
Query: 275 NV--EAKRDLATIPSCAKLYYEVEMMDF----------------IKEKVPWEMNNQGKIE 316
            +   A  +   +P  A L  ++E++ +                +KE   +E  N+G + 
Sbjct: 207 EMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVV 266
Query: 317 AA--GRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350
                 K ++G +  K G  E+   ++    + V E
Sbjct: 267 TVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIE 302

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score =  164 bits (415), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 116/351 (33%), Positives = 176/351 (50%), Gaps = 37/351 (10%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +TP  GD V +HY G L +G KFDS+ DR +P  F +G GQV   
Sbjct: 30  DRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKA 89
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWITVVDLSKDG 163
            D G+ TMKK E  +       E  +G  G    +P N+ + FEVEL+ +    DL +DG
Sbjct: 90  WDIGVATMKKGE--ICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLDF-KGEDLLEDG 146
Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
           GI+++   +GE  ++P +   V +  +   G           G  F  +DV++       
Sbjct: 147 GIIRRTKRRGEGYSNPNEGARVQIHLEGRCG-----------GRVFDCRDVAF------- 188
Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
           TV E  G D + P+           G+D+    M++EE  I+ +   YGFG  EA +   
Sbjct: 189 TVGE--GEDHDIPI-----------GIDKALEKMQREEQCILHLGPRYGFG--EAGKPKF 233
Query: 284 TIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNK 343
            I   A+L YEV +  F K K  WEM+ + K+E A   KE+G + FK GKY +A  +Y K
Sbjct: 234 GIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGK 293
Query: 344 AADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394
               +  +    + E K  +S  ++ +LN A C LKL++Y  A+E C K +
Sbjct: 294 IVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score =  162 bits (411), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/351 (33%), Positives = 177/351 (50%), Gaps = 37/351 (10%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +TP  GD+V +HY G L +G KFDS+ DR +P  F LG GQV   
Sbjct: 30  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 89
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWITVVDLSKDG 163
            D G+ TMK+ E  +       E  +G  G    +P N+ + FE+EL+ +    DL +DG
Sbjct: 90  WDIGVATMKRGE--ICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF-KGEDLFEDG 146
Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
           GI+++   KGE  ++P +   V +  +   G           G  F  +DV++       
Sbjct: 147 GIIRRTKRKGEGYSNPNEGATVEIHLEGRCG-----------GRMFDCRDVAF------- 188
Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
           TV E  G D + P+           G+D+    M++EE  I+ +   YGFG  EA +   
Sbjct: 189 TVGE--GEDHDIPI-----------GIDKALEKMQREEQCILYLGPRYGFG--EAGKPKF 233
Query: 284 TIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNK 343
            I   A+L YEV +  F K K  WEM+ + K+E A   KE+G + FK GKY +A  +Y K
Sbjct: 234 GIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGK 293
Query: 344 AADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394
               +  +    + E K  +S  ++ +LN A C LKL++Y  A+E C K +
Sbjct: 294 IVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344

>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The Fk1 And Fk2 Domains Length = 264

Iteration: 1
 Score =  114 bits (286), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 86/267 (32%), Positives = 130/267 (48%), Gaps = 37/267 (13%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +TP  GD+V +HY G L +G KFDS+ DR +P  F LG GQV   
Sbjct: 34  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 93
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWITVVDLSKDG 163
            D G+ TMKK E  +       E  +G  G    +P N+ + FE+EL+ +    DL +DG
Sbjct: 94  WDIGVATMKKGE--ICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF-KGEDLFEDG 150
Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
           GI+++   KGE  ++P +   V +  +   G           G  F  +DV++       
Sbjct: 151 GIIRRTKRKGEGYSNPNEGATVEIHLEGRCG-----------GRMFDCRDVAF------- 192
Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
           TV E + +D             +  G+D+    M++EE  I+ +   YGFG  EA +   
Sbjct: 193 TVGEGEDHD-------------IPIGIDKALEKMQREEQCILYLGPRYGFG--EAGKPKF 237
Query: 284 TIPSCAKLYYEVEMMDFIKEKVPWEMN 310
            I   A+L YEV +  F K K  WEM+
Sbjct: 238 GIEPNAELIYEVTLKSFEKAKESWEMD 264

>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52 Length = 280

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/267 (33%), Positives = 127/267 (47%), Gaps = 39/267 (14%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   + P  GD V +HY G LLDGTKFDS+ DR D  +F LG G+V   
Sbjct: 50  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKA 109
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELVSWITVVDLS--K 161
            D  I TMK  E  V   T   E  +G  G    +PPN+ + FEVEL  +    DL+  +
Sbjct: 110 WDIAIATMKVGE--VCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF-KGEDLTEEE 166
Query: 162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE 221
           DGGI+++I  +GE  A P               +G +V    E  +E Y KD  +  R  
Sbjct: 167 DGGIIRRIQTRGEGYAKP--------------NEGAIV----EVALEGYYKDKLFDQREL 208
Query: 222 DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRD 281
              + E +  D             +  GL+R    M+K E +IV +   Y FG+V   ++
Sbjct: 209 RFEIGEGENLD-------------LPYGLERAIQRMEKGEHSIVYLKPSYAFGSV--GKE 253
Query: 282 LATIPSCAKLYYEVEMMDFIKEKVPWE 308
              IP  A+L YE+ +  F K K  WE
Sbjct: 254 KFQIPPNAELKYELHLKSFEKAKESWE 280

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score =  105 bits (261), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 118/237 (49%), Gaps = 33/237 (13%)
Query: 158 DLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYI 217
            + +DGGI+++I  +GE  A P +              G +V    E  +E Y KD  + 
Sbjct: 20  HMEEDGGIIRRIQTRGEGYAKPNE--------------GAIV----EVALEGYYKDKLFD 61
Query: 218 ARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE 277
            R     + E +  D             +  GL+R    M+K E +IV +   Y FG+V 
Sbjct: 62  QRELRFEIGEGENLD-------------LPYGLERAIQRMEKGEHSIVYLKPSYAFGSV- 107
Query: 278 AKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERA 337
             ++   IP  A+L YE+ +  F K K  WEMN++ K+E +   KE G + FK GKY++A
Sbjct: 108 -GKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQA 166
Query: 338 GKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394
             +Y K    +  + SF ++E +  ++LR++  LN A C LKL+ +  AIE C+K +
Sbjct: 167 LLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 116/237 (48%), Gaps = 33/237 (13%)
Query: 158 DLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYI 217
            + +DGGI+++I  +GE  A P +              G +V    E  +E Y KD  + 
Sbjct: 20  HMEEDGGIIRRIQTRGEGYAKPNE--------------GAIV----EVALEGYYKDKLFD 61
Query: 218 ARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE 277
            R     + E +  D             +  GL+R     +K E +IV +   Y FG+V 
Sbjct: 62  QRELRFEIGEGENLD-------------LPYGLERAIQRXEKGEHSIVYLKPSYAFGSV- 107
Query: 278 AKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERA 337
             ++   IP  A+L YE+ +  F K K  WE N++ K+E +   KE G + FK GKY++A
Sbjct: 108 -GKEKFQIPPNAELKYELHLKSFEKAKESWEXNSEEKLEQSTIVKERGTVYFKEGKYKQA 166
Query: 338 GKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394
             +Y K    +  + SF ++E +  ++LR++  LN A C LKL+ +  AIE C+K +
Sbjct: 167 LLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223

>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl Cis-Trans Isomerase From Giardia Lamblia, Seattle Structural Genomics Center For Infectious Disease Target Gilaa.00840.A Length = 130

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 48  IKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDN 107
           ++KK+L  G     P+ G +VT+HY G   DG +FDS+R R  P  F LG G+V  G D 
Sbjct: 26  LEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQ 85
Query: 108 GIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELVS 152
           G+ TM   E A+  FT+P +L +G  G    +PP + + FEVEL++
Sbjct: 86  GVATMTLGEKAL--FTIPYQLAYGERGYPPVIPPKATLVFEVELLA 129

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 91/171 (53%), Gaps = 7/171 (4%)
Query: 234 EQPLEFIT-DEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLY 292
           +QP+E +   E++ +AGL    A+MK  E A+V +  E  +G  E       +P  A L 
Sbjct: 92  QQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGK-EGNFSFPNVPPMADLL 150
Query: 293 YEVEMMDF--IKE-KVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS 349
           YEVE++ F   KE K   +M  + +I AA R+K +GN LFK  K E A ++Y  A   + 
Sbjct: 151 YEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG 210
Query: 350 EDGSF--VDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE 398
           +D  F      Q +  +++  C LN AAC +KLK Y  AI  C+ V+ E E
Sbjct: 211 DDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEE 261

>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl Isomerase Length = 135

Iteration: 1
 Score = 81.3 bits (199), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/119 (42%), Positives = 67/119 (56%), Gaps = 4/119 (3%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + K G     P  G  V +HYVGTL +GTKFDS+RDR D  +F LG G V  G
Sbjct: 13  DGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKG 72
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELVSWITVVDLSKD 162
            D G+ TM K E A   FT+ S+  +G  G    +P  + + FEVEL  W +  D+S D
Sbjct: 73  WDLGVATMTKGEVA--EFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEW-SAEDISPD 128

>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl Isomerase Length = 135

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGF 273
           V Y+  LE+GT F+     G+Q   F      VI G D   ATM K E A  TI  +YG+
Sbjct: 38  VHYVGTLENGTKFDSSRDRGDQ-FSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGY 96
Query: 274 GNVEAKRDLATIPSCAKLYYEVEMMDFIKEKV 305
           G+  +      IP  A L +EVE+ ++  E +
Sbjct: 97  GDAGSP---PKIPGGATLIFEVELFEWSAEDI 125

>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52, Rapamycin And The Frb Fragment Of Mtor Length = 144

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   + P  GD V +HY G LLDGTKFDS+ DR D  +F LG G+V   
Sbjct: 34  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKA 93
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELVSW 153
            D  I TMK  E  V   T   E  +G  G    +PPN+ + FEVEL  +
Sbjct: 94  WDIAIATMKVGE--VCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 141

>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52 Length = 140

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   + P  GD V +HY G LLDGTKFDS+ DR D  +F LG G+V   
Sbjct: 30  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKA 89
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELVSW 153
            D  I TMK  E  V   T   E  +G  G    +PPN+ + FEVEL  +
Sbjct: 90  WDIAIATMKVGE--VCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 137

>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda Fk506-Binding Protein, Nmr, Minimized Average Structure Length = 149

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 62/111 (55%), Gaps = 5/111 (4%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +TP  GD V +HY G LLDGTKFDS+ DR D  +F LG G+V   
Sbjct: 29  DEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKA 88
Query: 105 LDNGIITMKKRE-CAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELVSW 153
            D  + TMK  E C +   T   E  +G  G    +PPN+ + FEVEL  +
Sbjct: 89  WDIAVATMKVGELCRI---TCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 136

>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation M61h From Burkholderia Pseudomallei Complexed With Fk506 Length = 113

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
           G  V++HY G L DG KFDS++DR DP  F LG G V  G D G+  MK     V   T+
Sbjct: 26  GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGHVIKGWDEGVQGMKV--GGVRRLTI 83
Query: 125 PSELRFGVEGRDS-LPPNSVVQFEVELV 151
           P +L +G  G    +PPN+ + FEVEL+
Sbjct: 84  PPQLGYGARGAGGVIPPNATLVFEVELL 111

>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From Burkholderia Pseudomallei Length = 133

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
           G  V++HY G L DG KFDS++DR DP  F LG G V  G D G+  MK     V   T+
Sbjct: 46  GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKV--GGVRRLTI 103
Query: 125 PSELRFGVEGRDS-LPPNSVVQFEVELV 151
           P +L +G  G    +PPN+ + FEVEL+
Sbjct: 104 PPQLGYGARGAGGVIPPNATLVFEVELL 131

>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 117

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
           G  V++HY G L DG KFDS++DR DP  F LG G V  G D G+  MK     V   T+
Sbjct: 30  GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKV--GGVRRLTI 87
Query: 125 PSELRFGVEGRDS-LPPNSVVQFEVELV 151
           P +L +G  G    +PPN+ + FEVEL+
Sbjct: 88  PPQLGYGARGAGGVIPPNATLVFEVELL 115

>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation V3i From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
           G  V++HY G L DG KFDS++DR DP  F LG G V  G D G+  MK     V   T+
Sbjct: 122 GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKV--GGVRRLTI 179
Query: 125 PSELRFGVEGRDS-LPPNSVVQFEVELV 151
           P +L +G  G    +PPN+ + FEVEL+
Sbjct: 180 PPQLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed With Cj40 Length = 209

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
           G  V++HY G L DG KFDS++DR DP  F LG G V  G D G+  MK     V   T+
Sbjct: 122 GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKV--GGVRRLTI 179
Query: 125 PSELRFGVEGRDS-LPPNSVVQFEVELV 151
           P +L +G  G    +PPN+ + FEVEL+
Sbjct: 180 PPQLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With A G95a Surface Mutation From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
           G  V++HY G L DG KFDS++DR DP  F LG G V  G D G+  MK     V   T+
Sbjct: 122 GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKV--GGVRRLTI 179
Query: 125 PSELRFGVEGRDS-LPPNSVVQFEVELV 151
           P +L +G  G    +PPN+ + FEVEL+
Sbjct: 180 PPQLGYGARGAAGVIPPNATLVFEVELL 207

>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation A54e From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
           G  V++HY G L DG KFDS++DR DP  F LG G V  G D G+  MK     V   T+
Sbjct: 122 GQTVSVHYTGWLTDGQKFDSSKDRNDPFEFVLGGGMVIKGWDEGVQGMKV--GGVRRLTI 179
Query: 125 PSELRFGVEGRDS-LPPNSVVQFEVELV 151
           P +L +G  G    +PPN+ + FEVEL+
Sbjct: 180 PPQLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506 Binding Domain From Plasmodium Vivax Length = 126

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 71/114 (62%), Gaps = 8/114 (7%)
Query: 45  NSGIKKKLLKNGV--DWDTPEFGDEVTIHYVGTL-LDGTKFDSTRDRYDPLTFKLGTGQV 101
           + G+ K +L+ G   + + P+ G+EVT+HYVG L   G  FDS+R+R  P  F LG G+V
Sbjct: 14  DGGVVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLGQGEV 73
Query: 102 ATGLDNGIITMKKRE-CAVFTFTLPSELRFGVEG-RDSLPPNSVVQFEVELVSW 153
             G D  + +M K E C+V    L S+  +G EG  +S+P NSV+ FE+EL+S+
Sbjct: 74  IKGWDICVASMTKNEKCSV---RLDSKYGYGEEGCGESIPGNSVLIFEIELISF 124

>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506 Binding Domain From Plasmodium Vivax Length = 126

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 30/145 (20%)
Query: 157 VDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSY 216
           V L++DGG+VK IL KGE                            P++G E     V Y
Sbjct: 9   VHLTEDGGVVKTILRKGEGGEE----------------------NAPKKGNEV---TVHY 43
Query: 217 IARLE-DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGN 275
           + +LE  G VF+    +   P +F   + +VI G D   A+M K E   V ++ +YG+G 
Sbjct: 44  VGKLESSGKVFDSS-RERNVPFKFHLGQGEVIKGWDICVASMTKNEKCSVRLDSKYGYGE 102
Query: 276 VEAKRDLATIPSCAKLYYEVEMMDF 300
                   +IP  + L +E+E++ F
Sbjct: 103 EGCGE---SIPGNSVLIFEIELISF 124

>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +TP  GD+V +HY G L +G KFDS+ DR +P  F LG GQV   
Sbjct: 34  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 93
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
            D G+ TMKK E  +       E  +G  G    +P N+ + FE+EL+ +
Sbjct: 94  WDIGVATMKKGE--ICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 141

>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 202 TPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEE 261
           TP  G + Y   V Y  +L +G  F+   +D  +P  F   + QVI   D   ATMKK E
Sbjct: 50  TPMIGDKVY---VHYKGKLSNGKKFDSS-HDRNEPFVFSLGKGQVIKAWDIGVATMKKGE 105
Query: 262 WAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF 300
              +    EY +G+  +   L  IPS A L++E+E++DF
Sbjct: 106 ICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDF 141

>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +TP  GD+V +HY G L +G KFDS+ DR +P  F LG GQV   
Sbjct: 18  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 77
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
            D G+ TMKK E  +       E  +G  G    +P N+ + FE+EL+ +
Sbjct: 78  WDIGVATMKKGE--ICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 125

>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 202 TPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEE 261
           TP  G + Y   V Y  +L +G  F+   +D  +P  F   + QVI   D   ATMKK E
Sbjct: 34  TPMIGDKVY---VHYKGKLSNGKKFDSS-HDRNEPFVFSLGKGQVIKAWDIGVATMKKGE 89
Query: 262 WAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF 300
              +    EY +G+  +   L  IPS A L++E+E++DF
Sbjct: 90  ICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDF 125

>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51, Rapamycin And The Frb Fragment Of Mtor At Low Ph Length = 144

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +TP  GD+V +HY G L +G KFDS+ DR +P  F LG GQV   
Sbjct: 34  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 93
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
            D G+ TMKK E  +       E  +G  G    +P N+ + FE+EL+ +
Sbjct: 94  WDIGVATMKKGE--ICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 141

>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51, Rapamycin And The Frb Fragment Of Mtor At Low Ph Length = 144

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 202 TPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEE 261
           TP  G + Y   V Y  +L +G  F+   +D  +P  F   + QVI   D   ATMKK E
Sbjct: 50  TPMIGDKVY---VHYKGKLSNGKKFDSS-HDRNEPFVFSLGKGQVIKAWDIGVATMKKGE 105
Query: 262 WAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF 300
              +    EY +G+  +   L  IPS A L++E+E++DF
Sbjct: 106 ICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDF 141

>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +TP  GD+V +HY G L +G KFDS+ DR +P  F LG GQV   
Sbjct: 18  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 77
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
            D G+ TMKK E  +       E  +G  G    +P N+ + FE+EL+ +
Sbjct: 78  WDIGVATMKKGE--ICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 125

>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 202 TPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEE 261
           TP  G + Y   V Y  +L +G  F+   +D  +P  F   + QVI   D   ATMKK E
Sbjct: 34  TPMIGDKVY---VHYKGKLSNGKKFDSS-HDRNEPFVFSLGKGQVIKAWDIGVATMKKGE 89
Query: 262 WAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF 300
              +    EY +G+  +   L  IPS A L++E+E++DF
Sbjct: 90  ICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDF 125

>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation D44g From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
           G  V++HY G L DG KF S++DR DP  F LG G V  G D G+  MK     V   T+
Sbjct: 122 GQTVSVHYTGWLTDGQKFGSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKV--GGVRRLTI 179
Query: 125 PSELRFGVEGRDS-LPPNSVVQFEVELV 151
           P +L +G  G    +PPN+ + FEVEL+
Sbjct: 180 PPQLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug Complexes. Crystallographic And Functional Analysis Length = 113

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/91 (46%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 62  PEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFT 121
           P+ GD VTIHY GTL +G KFDS+ DR  P    +G GQV  G D GI  +   E A   
Sbjct: 22  PKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKA--R 79
Query: 122 FTLPSELRFGVEGRDSL-PPNSVVQFEVELV 151
            T+P    +G  G   L PPNS + F+VEL+
Sbjct: 80  LTIPGPYAYGPRGFPGLIPPNSTLVFDVELL 110

>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation R92g From Burkholderia Pseudomallei Complexed With Fk506 Length = 113

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
           G  V++HY G L DG KFDS++DR DP  F LG G V  G D G+  MK     V   T+
Sbjct: 26  GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKV--GGVRRLTI 83
Query: 125 PSELRFGVEGRDS-LPPNSVVQFEVELV 151
           P +L +G  G    +PPN+ + FEVEL+
Sbjct: 84  PPQLGYGAGGAGGVIPPNATLVFEVELL 111

>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Plasmodium Falciparum Fkbp35 In Complex With Fk506 Length = 129

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 8/114 (7%)
Query: 45  NSGIKKKLLKNGVDW--DTPEFGDEVTIHYVGTLLD-GTKFDSTRDRYDPLTFKLGTGQV 101
           + G+ K +LK G +   + P+ G+EVT+HYVG L   G  FDS+ DR  P  F L  G+V
Sbjct: 15  DGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEV 74
Query: 102 ATGLDNGIITMKKRE-CAVFTFTLPSELRFGVEG-RDSLPPNSVVQFEVELVSW 153
             G D  + +M+K E C V    + S   +G EG  +S+P NSV+ FE+EL+S+
Sbjct: 75  IKGWDICVSSMRKNEKCLV---RIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125

>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Plasmodium Falciparum Fkbp35 In Complex With Fk506 Length = 129

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 30/145 (20%)
Query: 157 VDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSY 216
           V+L+ DGG++K IL+KG+                            P++G E     V Y
Sbjct: 10  VELTADGGVIKTILKKGDEGEE----------------------NIPKKGNEV---TVHY 44
Query: 217 IARLED-GTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGN 275
           + +LE  G VF+   +D   P +F  ++ +VI G D   ++M+K E  +V I   YG+G+
Sbjct: 45  VGKLESTGKVFDSS-FDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGD 103
Query: 276 VEAKRDLATIPSCAKLYYEVEMMDF 300
                   +IP  + L +E+E++ F
Sbjct: 104 EGCGE---SIPGNSVLLFEIELLSF 125

>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35 From Plasmodium Falciparum Length = 135

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 8/114 (7%)
Query: 45  NSGIKKKLLKNGVDW--DTPEFGDEVTIHYVGTLLD-GTKFDSTRDRYDPLTFKLGTGQV 101
           + G+ K +LK G +   + P+ G+EVT+HYVG L   G  FDS+ DR  P  F L  G+V
Sbjct: 15  DGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEV 74
Query: 102 ATGLDNGIITMKKRE-CAVFTFTLPSELRFGVEG-RDSLPPNSVVQFEVELVSW 153
             G D  + +M+K E C V    + S   +G EG  +S+P NSV+ FE+EL+S+
Sbjct: 75  IKGWDICVSSMRKNEKCLV---RIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125

>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35 From Plasmodium Falciparum Length = 135

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 30/145 (20%)
Query: 157 VDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSY 216
           V+L+ DGG++K IL+KG+                            P++G E     V Y
Sbjct: 10  VELTADGGVIKTILKKGDEGEE----------------------NIPKKGNEV---TVHY 44
Query: 217 IARLED-GTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGN 275
           + +LE  G VF+   +D   P +F  ++ +VI G D   ++M+K E  +V I   YG+G+
Sbjct: 45  VGKLESTGKVFDSS-FDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGD 103
Query: 276 VEAKRDLATIPSCAKLYYEVEMMDF 300
                   +IP  + L +E+E++ F
Sbjct: 104 EGCGE---SIPGNSVLLFEIELLSF 125

>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25 Length = 116

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 60/111 (54%), Gaps = 11/111 (9%)
Query: 50  KKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDST-------RDRYDPLTFKLGTGQVA 102
           K +LK G   + P+ GD V   Y GTL DGT FD+        +    PL+FK+G G+V 
Sbjct: 5   KSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVI 64
Query: 103 TGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD--SLPPNSVVQFEVELV 151
            G D  ++TM K E A     +  E  +G +G+    +PPN+ + FEVELV
Sbjct: 65  RGWDEALLTMSKGEKA--RLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELV 113

>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25 Length = 116

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 216 YIARLEDGTVFEK------KGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINH 269
           Y   L+DGTVF+       K     +PL F     +VI G D    TM K E A + I  
Sbjct: 27  YTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEP 86
Query: 270 EYGFGNVEAKRDLATIPSCAKLYYEVEMMDF 300
           E+ +G  + + D A IP  AKL +EVE++D 
Sbjct: 87  EWAYGK-KGQPD-AKIPPNAKLTFEVELVDI 115

>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex Length = 119

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 61/117 (52%), Gaps = 11/117 (9%)
Query: 44  GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDST-------RDRYDPLTFKL 96
           G     K +LK G   + P+ GD V   Y GTL DGT FD+        +    PL+FK+
Sbjct: 2   GPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKV 61
Query: 97  GTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD--SLPPNSVVQFEVELV 151
           G G+V  G D  ++TM K E A     +  E  +G +G+    +PPN+ + FEVELV
Sbjct: 62  GVGKVIRGWDEALLTMSKGEKA--RLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELV 116

>pdb|2PBC|A Chain A, Fk506-Binding Protein 2 Length = 102

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
           GD + +HY G L DGT+FDS+  +  P  F LGTGQV  G D G++ M + E       +
Sbjct: 9   GDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKR--KLVI 66
Query: 125 PSELRFGVEGRDS-LPPNSVVQFEVELV 151
           PSEL +G  G    +P  + + FEVEL+
Sbjct: 67  PSELGYGERGAPPKIPGGATLVFEVELL 94

>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG KFDS+RDR  P  F LG  +V  GL+
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGLE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A    T+  +  +G  G    +PP++ + F+VEL+
Sbjct: 61  EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator (Tcmip) Length = 167

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 68/138 (49%), Gaps = 18/138 (13%)
Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG+  + +  G     P   D+  +HY G L DGT FDS+R+R  P TF+    +V  G 
Sbjct: 37  SGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFR--PNEVIKGW 94
Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGRDSL-PPNSVVQFEVELVSWITVVDLSKDGG 164
              +  M  RE   +   +P +L +GV G   + PP S ++F+VEL+S        KDGG
Sbjct: 95  TEALQLM--REGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELIS-------IKDGG 145
Query: 165 I------VKKILEKGERD 176
                  V +IL K E D
Sbjct: 146 KGRTAEEVDEILRKAEED 163

>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin Length = 107

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L +G KFDS+RDR  P  F++G  +V  G +
Sbjct: 1   GVEIETISPGDGRTFPKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELVSW 153
            G   M   + A  T T   ++ +G  G    +PPN+ + F+VEL++ 
Sbjct: 61  EGAAQMSLGQRAKLTCT--PDVAYGATGHPGVIPPNATLIFDVELLNL 106

>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding Protein Length = 107

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG KFDS+RDR  P  F LG  +V  G +
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRGWE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A    T+  +  +G  G    +PPN+ + F+VEL+
Sbjct: 61  EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPNATLIFDVELL 104

>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti Length = 108

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++   L  G +   P+ G    +HY GTL DG  FDS+R R  P  F +G G+V  G D
Sbjct: 2   GVQVVTLAAGDEATYPKAGQVAVVHYTGTLADGKVFDSSRTRGKPFRFTVGRGEVIRGWD 61
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A        +  +G  G    +PPN+ + F+VEL+
Sbjct: 62  EGVAQMSVGQRA--KLVCSPDYAYGSRGHPGVIPPNATLTFDVELL 105

>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG KFDS+RDR  P  F LG  +V  G +
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGFE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A    T+  +  +G  G    +PP++ + F+VEL+
Sbjct: 61  EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin B, Fkbp12 And The Immunosuppressant Drug Fk506 (tacrolimus) Length = 107

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG KFDS+RDR  P  F LG  +V  G +
Sbjct: 1   GVQVETISPGDGRTFPKAGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A    T+  +  +G  G    +PP++ + F+VEL+
Sbjct: 61  EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 109

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG KFDS+RDR  P  F LG  +V  G +
Sbjct: 3   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 62
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A    T+  +  +G  G    +PP++ + F+VEL+
Sbjct: 63  EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELL 106

>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With Huma Length = 107

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG KFDS+RDR  P  F LG  +V  G +
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A    T+  +  +G  G    +PP++ + F+VEL+
Sbjct: 61  EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG KFDS+RDR  P  F LG  +V  G  
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWQ 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A    T+  +  +G  G    +PP++ + F+VEL+
Sbjct: 61  EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp- 12 Complex Length = 107

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 62  PEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFT 121
           P+ G    +HY G L DG KFDS+RDR  P  F LG  +V  G + G+  M   + A   
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRA--K 73
Query: 122 FTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            T+  +  +G  G    +PP++ + F+VEL+
Sbjct: 74  LTISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG KFDS+RDR  P  F LG  +V  G  
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWA 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A    T+  +  +G  G    +PP++ + F+VEL+
Sbjct: 61  EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex Length = 107

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG K DS+RDR  P  F LG  +V  G +
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKMDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A  T +   +  +G  G    +PP++ + F+VEL+
Sbjct: 61  EGVAQMSVGQRAKLTIS--PDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH Immunosuppressant Fk506 Length = 107

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG KFDS+RD+  P  F LG  +V  G +
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDKNKPFKFMLGKQEVIRGWE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A    T+  +  +G  G    +PP++ + F+VEL+
Sbjct: 61  EGVAQMSVGQRA--KLTISPDYAYGATGVPGIIPPHATLVFDVELL 104

>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13 Length = 129

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 20/102 (19%)
Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGI---------ITMKKR 115
           G  +  HYVG L +G  FDS+ +R  PLTF++G G+V  G D GI         +T  KR
Sbjct: 30  GQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGKR 89
Query: 116 ECAVFTFTLPSELRFGVEGRDS------LPPNSVVQFEVELV 151
                T  +P EL +G  G         +PP SV+ F++E +
Sbjct: 90  -----TLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 126

>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand Length = 107

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG K DS+RDR  P  F LG  +V  G +
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A    T+  +  +G  G    +PP++ + F+VEL+
Sbjct: 61  EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli Length = 245

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 7/118 (5%)
Query: 36  KVGEERGLGNS--GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLT 93
           K  +E+G+  S  G+  ++++ G   + P+  D V ++Y GTL+DG +FD++  R +PL+
Sbjct: 109 KFAKEKGVKTSSTGLVYQVVEAG-KGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLS 167
Query: 94  FKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELV 151
           F+L    V  G   G+  +KK         +P EL +G  G   +PPNS + F+VEL+
Sbjct: 168 FRLDG--VIPGWTEGLKNIKKGGKI--KLVIPPELAYGKAGVPGIPPNSTLVFDVELL 221

>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From Escherichia Coli Length = 224

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 7/118 (5%)
Query: 36  KVGEERGLGNS--GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLT 93
           K  +E+G+  S  G+  ++++ G   + P+  D V ++Y GTL+DG +FD++  R +PL+
Sbjct: 109 KFAKEKGVKTSSTGLVYQVVEAG-KGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLS 167
Query: 94  FKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELV 151
           F+L    V  G   G+  +KK         +P EL +G  G   +PPNS + F+VEL+
Sbjct: 168 FRLDG--VIPGWTEGLKNIKKGGKI--KLVIPPELAYGKAGVPGIPPNSTLVFDVELL 221

>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity Potentiator Protein (Mip) A Major Virulence Factor From Legionella Pneumophila Length = 213

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG++ K++ +G +   P   D VT+ Y G L+DGT FDST     P TF++   QV  G 
Sbjct: 106 SGLQYKVINSG-NGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGW 162
Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEG-RDSLPPNSVVQFEVELVS 152
              +  M     + +   +PS L +G       + PN  + F++ L+S
Sbjct: 163 TEALQLMP--AGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLIS 208

>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella Pneumophila Mip Length = 137

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG++ K++ +G +   P   D VT+ Y G L+DGT FDST     P TF++   QV  G 
Sbjct: 30  SGLQYKVINSG-NGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGW 86
Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEG-RDSLPPNSVVQFEVELVS 152
              +  M     + +   +PS L +G       + PN  + F++ L+S
Sbjct: 87  TEALQLMP--AGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLIS 132

>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein Pfl2275c, C-Terminal Tpr-Containing Domain Length = 198

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 303 EKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLV 362
           +K  ++  ++ K+++A   KEEGN  FK  +   A  KY +A D       +  D+Q L+
Sbjct: 23  KKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW--DDQILL 80
Query: 363 ---KSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394
              K++ +SC LN A C  K KDY  AI+  SKV+
Sbjct: 81  DKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115

>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans Isomerase Fkbp14 Length = 125

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 11/93 (11%)
Query: 65  GDEVTIHYVGTL-LDGTKFDSTRDRYD--PLTFKLGTGQVATGLDNGIITM---KKRECA 118
           GD + +HY G L  DG+ F ST    +  P+ F LG  +   G D G+  M   +KR+  
Sbjct: 32  GDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRK-- 89
Query: 119 VFTFTLPSELRFGVEGRDSLPPNSVVQFEVELV 151
                +P  L +G EG+  +PP S + F ++L+
Sbjct: 90  ---LIIPPALGYGKEGKGKIPPESTLIFNIDLL 119

>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6 Length = 134

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 7/114 (6%)
Query: 44  GNSGIKKKLLKNGV-DWDTPEFGDEVTIHYVGTLLDGTK-FDSTRDRYDPLTFKLGTGQV 101
           G+ G+ K +++ G  D   P+    V + Y G L    + FDS   R  P   KLG    
Sbjct: 24  GDRGVLKDVIREGAGDLVAPD--ASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDIT 81
Query: 102 ATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSL-PPNSVVQFEVELVSWI 154
             G++ G+++M++ E A F F       +G  G   L PPN+ V FE+EL+ ++
Sbjct: 82  LWGMELGLLSMRRGELARFLFK--PNYAYGTLGCPPLIPPNTTVLFEIELLDFL 133

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDD-EQKLVKSLRVSCWLNSAACCLKL 380
           K  GN  FK+  +E A KKY K    V    +  +D +   ++ + +SC LN  AC LK+
Sbjct: 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM 286
Query: 381 KDYQGAIELC 390
            D+QGA++ C
Sbjct: 287 SDWQGAVDSC 296

>pdb|4DT4|A Chain A, Crystal Structure Of The Ppiase-Chaperone Slpa With The Chaperone Binding Site Occupied By The Linker Of The Purification Tag Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 68  VTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSE 127
           V +H+   L DGT  +STR+   P  F+LG   ++ GL+  ++ +K  +    TF+L  +
Sbjct: 31  VLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKT--TFSLEPD 88
Query: 128 LRFGVEGRDSLPPNSVVQF------EVELVSWITVVDLSKDGGIVKKI 169
             FGV   D +   S  +F      E+  +   T +D S+  G++++I
Sbjct: 89  AAFGVPSPDLIQYFSRREFMDAGEPEIGAIMLFTAMDGSEMPGVIREI 136

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	403
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-79
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	4e-64
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	1e-57
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	1e-56
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	3e-15
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	1e-51
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	4e-18
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	9e-45
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	3e-22
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	9e-38
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	9e-13
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	5e-35
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	1e-12
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	2e-34
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	2e-10
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	3e-34
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	2e-19
2ppn_A	107	FK506-binding protein 1A; high resolution protein	9e-34
2ppn_A	107	FK506-binding protein 1A; high resolution protein	5e-11
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	1e-33
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	3e-12
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	5e-33
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	3e-12
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	1e-32
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	6e-10
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	1e-32
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	6e-18
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	2e-32
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	2e-17
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	4e-32
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	2e-17
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	7e-32
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	4e-11
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	9e-32
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	3e-12
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	2e-30
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	3e-10
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	1e-29
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	3e-08
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	8e-29
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	5e-08
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	2e-28
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	4e-28
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	2e-08
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	6e-28
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	4e-08
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	7e-27
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	7e-08
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	9e-26
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	9e-23
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	6e-04
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	2e-22
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	4e-05
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	4e-20
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	2e-04
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	7e-20
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	2e-14
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	9e-14
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	2e-04
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	1e-10
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	5e-04
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	3e-10
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	4e-10
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	6e-10
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	3e-04
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-09
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	1e-09
2l6j_A	111	TPR repeat-containing protein associated with HSP;	1e-09
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	1e-09
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-09
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	1e-09
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-09
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	1e-09
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	2e-09
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-09
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	4e-09
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	4e-09
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	1e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-05
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	2e-07
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	3e-07
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	5e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	1e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	6e-04
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	7e-04

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  251 bits (641), Expect = 2e-79
 Identities = 116/392 (29%), Positives = 182/392 (46%), Gaps = 52/392 (13%)

Query: 7   MTLEKGANLSDIDGEEEEPGEVIESAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGD 66
           MT ++GA     + EE     V E    +         + G+ K + + G   +TP  GD
Sbjct: 1   MTTDEGAK----NNEESPTATVAEQGEDITS-----KKDRGVLKIVKRVGNGEETPMIGD 51

Query: 67  EVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPS 126
           +V +HY G L +G KFDS+ DR +P  F LG GQV    D G+ TMK+ E          
Sbjct: 52  KVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEIC--HLLCKP 109

Query: 127 ELRFGVEGR-DSLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEV 185
           E  +G  G    +P N+ + FE+EL+ +    DL +DGGI+++   KGE  ++P +   V
Sbjct: 110 EYAYGSAGSLPKIPSNATLFFEIELLDFKGE-DLFEDGGIIRRTKRKGEGYSNPNEGATV 168

Query: 186 LVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFIT---D 242
            +  +                                G +F+       + + F     +
Sbjct: 169 EIHLEGRC----------------------------GGRMFD------CRDVAFTVGEGE 194

Query: 243 EEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK 302
           +  +  G+D+    M++EE  I+ +   YGFG  EA +    I   A+L YEV +  F K
Sbjct: 195 DHDIPIGIDKALEKMQREEQCILYLGPRYGFG--EAGKPKFGIEPNAELIYEVTLKSFEK 252

Query: 303 EKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLV 362
            K  WEM+ + K+E A   KE+G + FK GKY +A  +Y K    +  +    + E K  
Sbjct: 253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKAS 312

Query: 363 KSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394
           +S  ++ +LN A C LKL++Y  A+E C K +
Sbjct: 313 ESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score =  208 bits (530), Expect = 4e-64
 Identities = 118/292 (40%), Positives = 157/292 (53%), Gaps = 37/292 (12%)

Query: 36  KVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFK 95
           KVGEE  +G  G+KKKLLK G  WDTPE GDEV +HY GTLLDG KFDS+RDR D   FK
Sbjct: 1   KVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFK 60

Query: 96  LGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEG-RDSLPPNSVVQFEVELVSWI 154
           LG GQV  G D GI TMKK E     FT+P EL +G  G   ++P N+ +QF+VEL+SW 
Sbjct: 61  LGQGQVIKGWDQGIKTMKKGE--NALFTIPPELAYGESGSPPTIPANATLQFDVELLSWT 118

Query: 155 TVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDV 214
           +V D++KDGGI KKIL++G++  +P D DEV VKY+                        
Sbjct: 119 SVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYE------------------------ 154

Query: 215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFG 274
              ARLEDGTV         + +EF   +  +   L +   TMKK E  ++ +  +YGFG
Sbjct: 155 ---ARLEDGTVV-----SKSEGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFG 206

Query: 275 N--VEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEE 324
                A  +   +P  A L  ++E++ +       +     K      +  E
Sbjct: 207 EMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYE 258

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score =  191 bits (487), Expect = 1e-57
 Identities = 93/265 (35%), Positives = 135/265 (50%), Gaps = 40/265 (15%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + GI KK+LK G  W+ P+  DEV + Y   L DGT    +      + F +  G +   
Sbjct: 126 DGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSE----GVEFTVKDGHLCPA 181

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR------DSLPPNSVVQFEVELVSWITVVD 158
           L   + TMKK E       +  +  FG  GR       ++PPN+ +  ++ELVSW TV +
Sbjct: 182 LAKAVKTMKKGEKV--LLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTE 239

Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
           +  D  I+KK+L++ E    P +   V                            V    
Sbjct: 240 IGDDKKILKKVLKEXEGYERPNEGAVV---------------------------TVKITG 272

Query: 219 RLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278
           +L+DGTVF KKG+D ++P EF TDEE VI GLDR    MKK E A+VTI  EY +G+ E+
Sbjct: 273 KLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTES 332

Query: 279 KRDLATIPSCAKLYYEVEMMDFIKE 303
           K+D A +P  + + YEVE++ F+K+
Sbjct: 333 KQD-AIVPPNSTVIYEVELVSFVKD 356

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score =  186 bits (474), Expect = 1e-56
 Identities = 85/306 (27%), Positives = 128/306 (41%), Gaps = 43/306 (14%)

Query: 8   TLEKGANLSDIDGEEEEPGEVIESAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDE 67
            L    +    +  +        +  P++  +     + G+ K + + G   + P  GD 
Sbjct: 13  GLVPRGSHMTAEEMKATESGAQSAPLPMEGVDISPKQDEGVLKVIKREGTGTEMPMIGDR 72

Query: 68  VTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSE 127
           V +HY G LLDGTKFDS+ DR D  +F LG G+V    D  I TMK  E      T   E
Sbjct: 73  VFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVC--HITCKPE 130

Query: 128 LRFGVEGR-DSLPPNSVVQFEVELVS-WITVVDLSKDGGIVKKILEKGERDASPGDLDEV 185
             +G  G    +PPN+ + FEVEL       +   +DGGI+++I  +GE  A P +   V
Sbjct: 131 YAYGSAGSPPKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEGAIV 190

Query: 186 LVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQ 245
            V  +    D                             +F+++       L F   E +
Sbjct: 191 EVALEGYYKDK----------------------------LFDQR------ELRFEIGEGE 216

Query: 246 VI---AGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK 302
            +    GL+R    M+K E +IV +   Y FG     ++   IP  A+L YE+ +  F K
Sbjct: 217 NLDLPYGLERAIQRMEKGEHSIVYLKPSYAFG--SVGKEKFQIPPNAELKYELHLKSFEK 274

Query: 303 EKVPWE 308
            K  WE
Sbjct: 275 AKESWE 280

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score = 74.5 bits (183), Expect = 3e-15
 Identities = 42/196 (21%), Positives = 62/196 (31%), Gaps = 43/196 (21%)

Query: 133 EGRDSLPPNSVVQFEVELVSWITV------------VDLSKDGGIVKKILEKGERDASPG 180
                L P        E+ +  +             +   +D G++K I  +G     P 
Sbjct: 9   HHSSGLVPRGSHMTAEEMKATESGAQSAPLPMEGVDISPKQDEGVLKVIKREGTGTEMPM 68

Query: 181 DLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI 240
             D V V Y                              L DGT F+    D +    F 
Sbjct: 69  IGDRVFVHY---------------------------TGWLLDGTKFDSS-LDRKDKFSFD 100

Query: 241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF 300
             + +VI   D   ATMK  E   +T   EY +G   +      IP  A L +EVE+ +F
Sbjct: 101 LGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYG---SAGSPPKIPPNATLVFEVELFEF 157

Query: 301 IKEKVPWEMNNQGKIE 316
             E +  E +      
Sbjct: 158 KGEDLTEEEDGGIIRR 173

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  175 bits (444), Expect = 1e-51
 Identities = 70/241 (29%), Positives = 113/241 (46%), Gaps = 39/241 (16%)

Query: 157 VDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSY 216
             + +DGGI+++I  +GE  A P +   V V  +    D                     
Sbjct: 19  SHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFD----------------- 61

Query: 217 IARLEDGTVFEKKGYDGEQPLEFITDEEQ---VIAGLDRVAATMKKEEWAIVTINHEYGF 273
                            ++ L F   E +   +  GL+R    M+K E +IV +   Y F
Sbjct: 62  -----------------QRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAF 104

Query: 274 GNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGK 333
           G+V   ++   IP  A+L YE+ +  F K K  WEMN++ K+E +   KE G + FK GK
Sbjct: 105 GSVG--KEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGK 162

Query: 334 YERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV 393
           Y++A  +Y K    +  + SF ++E +  ++LR++  LN A C LKL+ +  AIE C+K 
Sbjct: 163 YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222

Query: 394 I 394
           +
Sbjct: 223 L 223

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 83.8 bits (207), Expect = 4e-18
 Identities = 35/158 (22%), Positives = 65/158 (41%), Gaps = 18/158 (11%)

Query: 43  LGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQ-- 100
             + GI +++   G  +  P  G  V +   G   D   FD        L F++G G+  
Sbjct: 22  EEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKL-FDQ-----RELRFEIGEGENL 75

Query: 101 -VATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSL--PPNSVVQFEVELVSWITVV 157
            +  GL+  I  M+K E ++    L     FG  G++    PPN+ +++E+ L S+    
Sbjct: 76  DLPYGLERAIQRMEKGEHSI--VYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAK 133

Query: 158 DLSK-----DGGIVKKILEKGERDASPGDLDEVLVKYQ 190
           +  +            + E+G      G   + L++Y+
Sbjct: 134 ESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYK 171

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  157 bits (397), Expect = 9e-45
 Identities = 66/254 (25%), Positives = 110/254 (43%), Gaps = 35/254 (13%)

Query: 147 EVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEG 206
           E  +   +       D  + K+I+++G   + P       + Y+                
Sbjct: 33  EGNVPPKVDSEAEVLDEKVSKQIIKEGH-GSKPSKYSTCFLHYR---------------- 75

Query: 207 VEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFIT-DEEQVIAGLDRVAATMKKEEWAIV 265
                      A  ++     +  +  +QP+E +   E++ +AGL    A+MK  E A+V
Sbjct: 76  -----------AWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALV 124

Query: 266 TINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVP---WEMNNQGKIEAAGRKK 322
            +  E  +G  E       +P  A L YEVE++ F + K      +M  + +I AA R+K
Sbjct: 125 HVGWELAYGK-EGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRK 183

Query: 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSF--VDDEQKLVKSLRVSCWLNSAACCLKL 380
            +GN LFK  K E A ++Y  A   + +D  F      Q +  +++  C LN AAC +KL
Sbjct: 184 MDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKL 243

Query: 381 KDYQGAIELCSKVI 394
           K Y  AI  C+ V+
Sbjct: 244 KRYDEAIGHCNIVL 257

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 95.5 bits (237), Expect = 3e-22
 Identities = 36/155 (23%), Positives = 62/155 (40%), Gaps = 8/155 (5%)

Query: 4   ESVMTLEKGANLSDIDGEEEEPGEVIESAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPE 63
               T ++ + +              E   P KV  E  + +  + K+++K G     P 
Sbjct: 7   HQTQTHDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIKEG-HGSKPS 65

Query: 64  FGDEVTIHYVGTLLDGT-KFDSTRDRYDPLTFKLG-TGQVATGLDNGIITMKKRECAVFT 121
                 +HY     +   KF+ T     P+   LG   +   GL  G+ +MK  E A   
Sbjct: 66  KYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERA--L 123

Query: 122 FTLPSELRFGVEGRDS---LPPNSVVQFEVELVSW 153
             +  EL +G EG  S   +PP + + +EVE++ +
Sbjct: 124 VHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGF 158

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score =  132 bits (334), Expect = 9e-38
 Identities = 51/126 (40%), Positives = 69/126 (54%), Gaps = 4/126 (3%)

Query: 44  GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVAT 103
            + G+ K + K G     P  G  V +HYVGTL +GTKFDS+RDR D  +F LG G V  
Sbjct: 12  KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIK 71

Query: 104 GLDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWITV-VDLSK 161
           G D G+ TM K E A   FT+ S+  +G  G    +P  + + FEVEL  W    +   +
Sbjct: 72  GWDLGVATMTKGEVA--EFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEWSAEDISPDR 129

Query: 162 DGGIVK 167
           DG I++
Sbjct: 130 DGTILR 135

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score = 64.2 bits (157), Expect = 9e-13
 Identities = 43/152 (28%), Positives = 59/152 (38%), Gaps = 31/152 (20%)

Query: 160 SKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIAR 219
            KDGG++K I ++G+    P     V V Y      GT                      
Sbjct: 11  KKDGGVLKLIKKEGQGVVKPTTGTTVKVHYV-----GT---------------------- 43

Query: 220 LEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAK 279
           LE+GT F+    D      F      VI G D   ATM K E A  TI  +YG+G     
Sbjct: 44  LENGTKFDSS-RDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYG---DA 99

Query: 280 RDLATIPSCAKLYYEVEMMDFIKEKVPWEMNN 311
                IP  A L +EVE+ ++  E +  + + 
Sbjct: 100 GSPPKIPGGATLIFEVELFEWSAEDISPDRDG 131

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score =  124 bits (314), Expect = 5e-35
 Identities = 42/111 (37%), Positives = 60/111 (54%), Gaps = 3/111 (2%)

Query: 44  GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVAT 103
            + G+ K + + G   +TP  GD+V +HY G L +G KFDS+ DR +P  F LG GQV  
Sbjct: 17  KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIK 76

Query: 104 GLDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
             D G+ TMKK E          E  +G  G    +P N+ + FE+EL+ +
Sbjct: 77  AWDIGVATMKKGEIC--HLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 125

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score = 63.4 bits (155), Expect = 1e-12
 Identities = 40/147 (27%), Positives = 61/147 (41%), Gaps = 31/147 (21%)

Query: 157 VDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSY 216
           +   KD G++K +   G  + +P   D+V                            V Y
Sbjct: 13  ITSKKDRGVLKIVKRVGNGEETPMIGDKV---------------------------YVHY 45

Query: 217 IARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNV 276
             +L +G  F+   +D  +P  F   + QVI   D   ATMKK E   +    EY +G  
Sbjct: 46  KGKLSNGKKFDSS-HDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYG-- 102

Query: 277 EAKRDLATIPSCAKLYYEVEMMDFIKE 303
            +   L  IPS A L++E+E++DF  E
Sbjct: 103 -SAGSLPKIPSNATLFFEIELLDFKGE 128

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score =  123 bits (310), Expect = 2e-34
 Identities = 43/110 (39%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
              +K   +  G     P+ GD VTIHY GTL +G KFDS+ DR  P    +G GQV  G
Sbjct: 5   EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKG 64

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
            D GI  +   E A    T+P    +G  G    +PPNS + F+VEL+  
Sbjct: 65  WDVGIPKLSVGEKA--RLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLKV 112

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score = 56.8 bits (138), Expect = 2e-10
 Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 11/114 (9%)

Query: 187 VKYQVM-LGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQ 245
           VK   +  GDG    K   + V      + Y   LE+G  F+    D   P +      Q
Sbjct: 8   VKIDRISPGDGATFPK-TGDLVT-----IHYTGTLENGQKFDSS-VDRGSPFQCNIGVGQ 60

Query: 246 VIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMD 299
           VI G D     +   E A +TI   Y +G    +     IP  + L ++VE++ 
Sbjct: 61  VIKGWDVGIPKLSVGEKARLTIPGPYAYG---PRGFPGLIPPNSTLVFDVELLK 111

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score =  123 bits (310), Expect = 3e-34
 Identities = 40/137 (29%), Positives = 57/137 (41%), Gaps = 11/137 (8%)

Query: 32  AAPLKVGEERG--LGNSGIKKKLLKNGVD-WDTPEFGDEVTIHYVGTLLDGTKFDSTRDR 88
            +    GEE    LGN  ++KK L  G      P  G  VT+H   +L +GT+       
Sbjct: 1   GSSGSSGEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEP-- 58

Query: 89  YDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDS--LPPNSVVQF 146
              L F LG   V   LD  +  M   E      T  S+  +G +G  S  +PP++ +  
Sbjct: 59  --ELVFTLGDCDVIQALDLSVPLMDVGE--TAMVTADSKYCYGPQGSRSPYIPPHAALCL 114

Query: 147 EVELVSWITVVDLSKDG 163
           EV L + +   DL   G
Sbjct: 115 EVTLKTAVDRPDLEMSG 131

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score = 82.8 bits (205), Expect = 2e-19
 Identities = 33/149 (22%), Positives = 48/149 (32%), Gaps = 35/149 (23%)

Query: 157 VDLSKDGGIVKKILEKG-ERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVS 215
           +D+  +G + KK L  G    + P     V V                            
Sbjct: 11  LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHL-------------------------- 44

Query: 216 YIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGN 275
               LE+GT         E  L F   +  VI  LD     M   E A+VT + +Y +G 
Sbjct: 45  -QTSLENGTRV-----QEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGP 98

Query: 276 VEAKRDLATIPSCAKLYYEVEMMDFIKEK 304
             ++     IP  A L  EV +   +   
Sbjct: 99  QGSR--SPYIPPHAALCLEVTLKTAVDRP 125

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score =  120 bits (304), Expect = 9e-34
 Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 3/108 (2%)

Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG KFDS+RDR  P  F LG  +V  G +
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
            G+  M   + A    T+  +  +G  G    +PP++ + F+VEL+  
Sbjct: 61  EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score = 58.3 bits (142), Expect = 5e-11
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 11/115 (9%)

Query: 187 VKYQVM-LGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQ 245
           V+ + +  GDG    K   +        V Y   LEDG  F+    D  +P +F+  +++
Sbjct: 2   VQVETISPGDGRTFPK-RGQTCV-----VHYTGMLEDGKKFDSS-RDRNKPFKFMLGKQE 54

Query: 246 VIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF 300
           VI G +   A M   + A +TI+ +Y +G   A      IP  A L ++VE++  
Sbjct: 55  VIRGWEEGVAQMSVGQRAKLTISPDYAYG---ATGHPGIIPPHATLVFDVELLKL 106

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score =  122 bits (307), Expect = 1e-33
 Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 5/134 (3%)

Query: 21  EEEEPGEVIESAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGT 80
           +  E       A   +    +   + G+ K + + G   +TP  GD+V +HY G L +G 
Sbjct: 12  KNNEESPTATVAEQGEDITSKK--DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGK 69

Query: 81  KFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLP 139
           KFDS+ DR +P  F LG GQV    D G+ TMKK E          E  +G  G    +P
Sbjct: 70  KFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEIC--HLLCKPEYAYGSAGSLPKIP 127

Query: 140 PNSVVQFEVELVSW 153
            N+ + FE+EL+ +
Sbjct: 128 SNATLFFEIELLDF 141

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score = 63.1 bits (154), Expect = 3e-12
 Identities = 40/147 (27%), Positives = 61/147 (41%), Gaps = 31/147 (21%)

Query: 157 VDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSY 216
           +   KD G++K +   G  + +P   D+V V                            Y
Sbjct: 29  ITSKKDRGVLKIVKRVGNGEETPMIGDKVYVH---------------------------Y 61

Query: 217 IARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNV 276
             +L +G  F+   +D  +P  F   + QVI   D   ATMKK E   +    EY +G  
Sbjct: 62  KGKLSNGKKFDSS-HDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYG-- 118

Query: 277 EAKRDLATIPSCAKLYYEVEMMDFIKE 303
            +   L  IPS A L++E+E++DF  E
Sbjct: 119 -SAGSLPKIPSNATLFFEIELLDFKGE 144

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score =  119 bits (301), Expect = 5e-33
 Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 5/113 (4%)

Query: 44  GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLD-GTKFDSTRDRYDPLTFKLGTGQVA 102
           G+ G+ K +++ G   D       V + Y G L      FDS   R  P   KLG     
Sbjct: 24  GDRGVLKDVIREG-AGDLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITL 82

Query: 103 TGLDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWI 154
            G++ G+++M++ E A   F       +G  G    +PPN+ V FE+EL+ ++
Sbjct: 83  WGMELGLLSMRRGELA--RFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDFL 133

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score = 62.7 bits (153), Expect = 3e-12
 Identities = 28/147 (19%), Positives = 53/147 (36%), Gaps = 31/147 (21%)

Query: 155 TVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDV 214
            ++D+S D G++K ++ +G           VLVKY   L                     
Sbjct: 18  RMLDISGDRGVLKDVIREGA-GDLVAPDASVLVKYSGYLEHM------------------ 58

Query: 215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFG 274
                      F+   Y  + P      E+  + G++    +M++ E A       Y +G
Sbjct: 59  --------DRPFDSN-YFRKTPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYG 109

Query: 275 NVEAKRDLATIPSCAKLYYEVEMMDFI 301
            +        IP    + +E+E++DF+
Sbjct: 110 TLGCP---PLIPPNTTVLFEIELLDFL 133

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score =  118 bits (298), Expect = 1e-32
 Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 3/108 (2%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           + ++KK+L  G     P+ G +VT+HY G   DG +FDS+R R  P  F LG G+V  G 
Sbjct: 24  AQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGW 83

Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVS 152
           D G+ TM   E A   FT+P +L +G  G    +PP + + FEVEL++
Sbjct: 84  DQGVATMTLGEKA--LFTIPYQLAYGERGYPPVIPPKATLVFEVELLA 129

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score = 55.7 bits (135), Expect = 6e-10
 Identities = 33/138 (23%), Positives = 49/138 (35%), Gaps = 31/138 (22%)

Query: 162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE 221
              + KK+L  G+    P    +V V Y      G                         
Sbjct: 23  SAQLEKKVLTPGDGVTKPQAGKKVTVHYD-----GR----------------------FP 55

Query: 222 DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRD 281
           DG  F+       +P +F     +VI G D+  ATM   E A+ TI ++  +G       
Sbjct: 56  DGKQFDSS-RSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFTIPYQLAYGERGYP-- 112

Query: 282 LATIPSCAKLYYEVEMMD 299
              IP  A L +EVE++ 
Sbjct: 113 -PVIPPKATLVFEVELLA 129

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score =  118 bits (297), Expect = 1e-32
 Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 8/114 (7%)

Query: 43  LGNSGIKKKLLKNG-VDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQV 101
           LGN  ++KK L  G      P  G  VT+H   +L +GT+          L F LG   V
Sbjct: 10  LGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEP----ELVFTLGDCDV 65

Query: 102 ATGLDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWI 154
              LD  +  M   E A    T  S+  +G +GR   +PP++ +  EV L + +
Sbjct: 66  IQALDLSVPLMDVGETA--MVTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV 117

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score = 78.1 bits (193), Expect = 6e-18
 Identities = 33/146 (22%), Positives = 46/146 (31%), Gaps = 36/146 (24%)

Query: 157 VDLSKDGGIVKKILEKGE-RDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVS 215
           +D+  +G + KK L  G    + P     V V                            
Sbjct: 7   LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHL-------------------------- 40

Query: 216 YIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGN 275
               LE+GT         E  L F   +  VI  LD     M   E A+VT + +Y +G 
Sbjct: 41  -QTSLENGTRV-----QEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGP 94

Query: 276 VEAKRDLATIPSCAKLYYEVEMMDFI 301
                    IP  A L  EV +   +
Sbjct: 95  QGRS---PYIPPHAALCLEVTLKTAV 117

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score =  119 bits (300), Expect = 2e-32
 Identities = 37/148 (25%), Positives = 60/148 (40%), Gaps = 10/148 (6%)

Query: 21  EEEEPGEVIESAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGT 80
              EP +  E   P KV  E  + +  + K+++K G     P       +HY     +  
Sbjct: 26  VHSEPSQ--EGNVPPKVDSEAEVLDEKVSKQIIKEG-HGSKPSKYSTCFLHYRAWTKNSQ 82

Query: 81  -KFDSTRDRYDPLTFKLGT-GQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSL 138
            KF+ T     P+   LG   +   GL  G+ +MK  E A     +  EL +G EG  S 
Sbjct: 83  HKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERA--LVHVGWELAYGKEGNFSF 140

Query: 139 ---PPNSVVQFEVELVSWITVVDLSKDG 163
              PP + + +EVE++ +    +     
Sbjct: 141 PNVPPMADLLYEVEVIGFDETKEGKARS 168

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score = 78.4 bits (193), Expect = 2e-17
 Identities = 36/161 (22%), Positives = 65/161 (40%), Gaps = 33/161 (20%)

Query: 162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE 221
           D  + K+I+++G   + P       + Y+    +             F   + +      
Sbjct: 48  DEKVSKQIIKEGH-GSKPSKYSTCFLHYRAWTKNSQHK---------F---EDT------ 88

Query: 222 DGTVFEKKGYDGEQPLEF-ITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKR 280
                    +  +QP+E  +  E++ +AGL    A+MK  E A+V +  E  +G  E   
Sbjct: 89  ---------WHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGK-EGNF 138

Query: 281 DLATIPSCAKLYYEVEMMDFIKE---KVPWEMNNQGKIEAA 318
               +P  A L YEVE++ F +    K   +M  + +I AA
Sbjct: 139 SFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAA 179

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score =  117 bits (296), Expect = 4e-32
 Identities = 39/152 (25%), Positives = 59/152 (38%), Gaps = 9/152 (5%)

Query: 8   TLEKGANLSDIDGEEEEPGEVIESAAPLKVGEERGLGNSGIKKKLLKNGVD-WDTPEFGD 66
             E+      +  E     E   + AP        LGN  ++KK L  G      P  G 
Sbjct: 5   PAEEAEQPGALAREFLAAMEPEPAPAPAPEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQ 64

Query: 67  EVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPS 126
            VT+H   +L +GT+          L F LG   V   LD  +  M   E      T  S
Sbjct: 65  VVTVHLQTSLENGTRVQEEP----ELVFTLGDCDVIQALDLSVPLMDVGE--TAMVTADS 118

Query: 127 ELRFGVEGRDS--LPPNSVVQFEVELVSWITV 156
           +  +G +G  S  +PP++ +  EV L + + +
Sbjct: 119 KYCYGPQGSRSPYIPPHAALCLEVTLKTAVDL 150

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score = 78.3 bits (193), Expect = 2e-17
 Identities = 33/155 (21%), Positives = 48/155 (30%), Gaps = 35/155 (22%)

Query: 157 VDLSKDGGIVKKILEKG-ERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVS 215
           +D+  +G + KK L  G    + P     V V                            
Sbjct: 37  LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHL-------------------------- 70

Query: 216 YIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGN 275
               LE+GT         E  L F   +  VI  LD     M   E A+VT + +Y +G 
Sbjct: 71  -QTSLENGTRV-----QEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYG- 123

Query: 276 VEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMN 310
                    IP  A L  EV +   +  +     +
Sbjct: 124 -PQGSRSPYIPPHAALCLEVTLKTAVDLEHHHHHH 157

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score =  116 bits (293), Expect = 7e-32
 Identities = 45/114 (39%), Positives = 66/114 (57%), Gaps = 6/114 (5%)

Query: 44  GNSGIKKKLLKNGVDWD--TPEFGDEVTIHYVGTLLD-GTKFDSTRDRYDPLTFKLGTGQ 100
            + G+ K +LK G + +   P+ G+EVT+HYVG L   G  FDS+ DR  P  F L  G+
Sbjct: 14  ADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGE 73

Query: 101 VATGLDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
           V  G D  + +M+K E       + S   +G EG  +S+P NSV+ FE+EL+S+
Sbjct: 74  VIKGWDICVSSMRKNEKC--LVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score = 59.2 bits (144), Expect = 4e-11
 Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 32/150 (21%)

Query: 157 VDLSKDGGIVKKILEKGERD--ASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDV 214
           V+L+ DGG++K IL+KG+      P   +EV V Y   L                     
Sbjct: 10  VELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLES------------------- 50

Query: 215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFG 274
                   G VF+   +D   P +F  ++ +VI G D   ++M+K E  +V I   YG+G
Sbjct: 51  -------TGKVFDSS-FDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYG 102

Query: 275 NVEAKRDLATIPSCAKLYYEVEMMDFIKEK 304
               +    +IP  + L +E+E++ F + +
Sbjct: 103 ---DEGCGESIPGNSVLLFEIELLSFRELE 129

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score =  115 bits (291), Expect = 9e-32
 Identities = 44/119 (36%), Positives = 61/119 (51%), Gaps = 11/119 (9%)

Query: 44  GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDS-------TRDRYDPLTFKL 96
           G     K +LK G   + P+ GD V   Y GTL DGT FD+        +    PL+FK+
Sbjct: 2   GPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKV 61

Query: 97  GTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD--SLPPNSVVQFEVELVSW 153
           G G+V  G D  ++TM K E A     +  E  +G +G+    +PPN+ + FEVELV  
Sbjct: 62  GVGKVIRGWDEALLTMSKGEKA--RLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI 118

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score = 61.9 bits (151), Expect = 3e-12
 Identities = 40/139 (28%), Positives = 54/139 (38%), Gaps = 23/139 (16%)

Query: 162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE 221
                K IL+KG++   P   D V   Y   L DGT           F   D +      
Sbjct: 3   PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGT----------VF---DTNI----- 44

Query: 222 DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRD 281
                  K     +PL F     +VI G D    TM K E A + I  E+ +G  +  + 
Sbjct: 45  ---QTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYG--KKGQP 99

Query: 282 LATIPSCAKLYYEVEMMDF 300
            A IP   KL +EVE++D 
Sbjct: 100 DAKIPPNTKLIFEVELVDI 118

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score =  111 bits (280), Expect = 2e-30
 Identities = 38/101 (37%), Positives = 53/101 (52%), Gaps = 3/101 (2%)

Query: 60  DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAV 119
                GD + +HY G L DGT+FDS+  +  P  F LGTGQV  G D G++ M + E   
Sbjct: 4   IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKR- 62

Query: 120 FTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWITVVDL 159
               +PSEL +G  G    +P  + + FEVEL+      +L
Sbjct: 63  -KLVIPSELGYGERGAPPKIPGGATLVFEVELLKIERRTEL 102

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score = 55.6 bits (135), Expect = 3e-10
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGF 273
           + Y  +LEDGT F+       QP  F     QVI G D+    M + E   + I  E G+
Sbjct: 14  MHYTGKLEDGTEFDSS-LPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGY 72

Query: 274 GNVEAKRDLATIPSCAKLYYEVEMMDFIKEK 304
           G   A      IP  A L +EVE++   +  
Sbjct: 73  GERGAP---PKIPGGATLVFEVELLKIERRT 100

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score =  110 bits (278), Expect = 1e-29
 Identities = 45/108 (41%), Positives = 59/108 (54%), Gaps = 4/108 (3%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG+K + L  G        G  V++HY G L DG KFDS++DR DP  F LG G V  G 
Sbjct: 28  SGLKYEDLTEG-SGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGW 86

Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVS 152
           D G+  MK     V   T+P +L +G  G    +PPN+ + FEVEL+ 
Sbjct: 87  DEGVQGMKVGG--VRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLD 132

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score = 51.1 bits (123), Expect = 3e-08
 Identities = 34/116 (29%), Positives = 45/116 (38%), Gaps = 16/116 (13%)

Query: 187 VKYQVM-LGDGTMVAKTPEEG--VEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDE 243
           +KY+ +  G G         G  V      V Y   L DG  F+    D   P  F+   
Sbjct: 30  LKYEDLTEGSG----AEARAGQTVS-----VHYTGWLTDGQKFDSS-KDRNDPFAFVLGG 79

Query: 244 EQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMD 299
             VI G D     MK      +TI  + G+G   A      IP  A L +EVE++D
Sbjct: 80  GMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELLD 132

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score =  111 bits (278), Expect = 8e-29
 Identities = 48/132 (36%), Positives = 66/132 (50%), Gaps = 4/132 (3%)

Query: 22  EEEPGEVIESAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTK 81
           + E  ++IE+      G       SG+K + L  G        G  V++HY G L DG K
Sbjct: 80  DMEDNDIIEAHREQIGGSTVVTTESGLKYEDLTEG-SGAEARAGQTVSVHYTGWLTDGQK 138

Query: 82  FDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPP 140
           FDS++DR DP  F LG G V  G D G+  MK         T+P +L +G  G    +PP
Sbjct: 139 FDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVR--RLTIPPQLGYGARGAAGVIPP 196

Query: 141 NSVVQFEVELVS 152
           N+ + FEVEL+ 
Sbjct: 197 NATLVFEVELLD 208

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score = 52.1 bits (125), Expect = 5e-08
 Identities = 34/116 (29%), Positives = 45/116 (38%), Gaps = 16/116 (13%)

Query: 187 VKYQVM-LGDGTMVAKTPEEG--VEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDE 243
           +KY+ +  G G         G  V      V Y   L DG  F+    D   P  F+   
Sbjct: 106 LKYEDLTEGSG----AEARAGQTVS-----VHYTGWLTDGQKFDSS-KDRNDPFAFVLGG 155

Query: 244 EQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMD 299
             VI G D     MK      +TI  + G+G   A      IP  A L +EVE++D
Sbjct: 156 GMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAA---GVIPPNATLVFEVELLD 208

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  109 bits (275), Expect = 2e-28
 Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 2/104 (1%)

Query: 293 YEVEMMDF-IKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSED 351
              E + F   +K  ++  ++ K+++A   KEEGN  FK  +   A  KY +A D     
Sbjct: 12  SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT 71

Query: 352 GSFVDDEQ-KLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394
             + D       K++ +SC LN A C  K KDY  AI+  SKV+
Sbjct: 72  EEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score =  106 bits (266), Expect = 4e-28
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 6/111 (5%)

Query: 46  SGIKKKLLKNGVDW-DTPEFGDEVTIHYVGTL-LDGTKFDS--TRDRYDPLTFKLGTGQV 101
             +K ++L+         + GD + +HY G L  DG+ F S    +   P+ F LG  + 
Sbjct: 12  PEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEA 71

Query: 102 ATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVS 152
             G D G+  M   E       +P  L +G EG+  +PP S + F ++L+ 
Sbjct: 72  LKGWDQGLKGMCVGEKR--KLIIPPALGYGKEGKGKIPPESTLIFNIDLLE 120

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 8/95 (8%)

Query: 214 VSYIARLE-DGTVFEK-KGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEY 271
           V Y   LE DG++F     ++  QP+ F     + + G D+    M   E   + I    
Sbjct: 37  VHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPAL 96

Query: 272 GFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVP 306
           G+G    K     IP  + L + +++++      P
Sbjct: 97  GYG----KEGKGKIPPESTLIFNIDLLEI--RNGP 125

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score =  105 bits (265), Expect = 6e-28
 Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 15/120 (12%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG+       G        G  +  HYVG L +G  FDS+ +R  PLTF++G G+V  G 
Sbjct: 12  SGLAFCDKVVG-YGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGW 70

Query: 106 DNGII------TMKKRECAVFTFTLPSELRFGVEG------RDSLPPNSVVQFEVELVSW 153
           D GI+       M        T  +P EL +G  G         +PP SV+ F++E +  
Sbjct: 71  DQGILGSDGIPPMLTGGKR--TLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK 128

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 21/123 (17%)

Query: 187 VKYQVM-LGDGTMVAKTPEEGVEFYLKDVS--YIARLEDGTVFEKKGYDGEQPLEFITDE 243
           + +    +G G        +G     + +   Y+ +LE+G VF+   Y+  +PL F    
Sbjct: 14  LAFCDKVVGYG----PEAVKG-----QLIKAHYVGKLENGKVFDSS-YNRGKPLTFRIGV 63

Query: 244 EQVIAGLD------RVAATMKKEEWAIVTINHEYGFGN--VEAKRDLATIPSCAKLYYEV 295
            +VI G D           M       + I  E  +G+     K     IP  + L +++
Sbjct: 64  GEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDI 123

Query: 296 EMM 298
           E +
Sbjct: 124 EYI 126

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score =  104 bits (261), Expect = 7e-27
 Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 22/151 (14%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG+  + +  G     P   D+  +HY G L DGT FDS+R+R  P TF+    +V  G 
Sbjct: 37  SGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRP--NEVIKGW 94

Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWITVVDLSKDGG 164
              +  M+  E   +   +P +L +GV G    +PP S ++F+VEL+S            
Sbjct: 95  TEALQLMR--EGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELIS------------ 140

Query: 165 IVKKILEKGERDASPGDLDEVLVKYQVMLGD 195
                ++ G +  +  ++DE+L K +    D
Sbjct: 141 -----IKDGGKGRTAEEVDEILRKAEEDRED 166

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score = 50.8 bits (122), Expect = 7e-08
 Identities = 30/164 (18%), Positives = 60/164 (36%), Gaps = 34/164 (20%)

Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
           G+V + + +G    +P   D+  V Y                G            RL DG
Sbjct: 38  GLVFQRIARGSGKRAPAIDDKCEVHY---------------TG------------RLRDG 70

Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
           TVF+    +  +P  F  +  +VI G       M++ +   + I ++  +G         
Sbjct: 71  TVFDSS-RERGKPTTFRPN--EVIKGWTEALQLMREGDRWRLFIPYDLAYGVTGGG---G 124

Query: 284 TIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNL 327
            IP  + L ++VE++  IK+        +        +++  ++
Sbjct: 125 MIPPYSPLEFDVELIS-IKDGGKGRTAEEVDEILRKAEEDREDM 167

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  101 bits (253), Expect = 9e-26
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 3/89 (3%)

Query: 309 MNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCV---SEDGSFVDDEQKLVKSL 365
                K+++    +++GN LF    Y+ A   Y  A   +          + E   +   
Sbjct: 2   NAEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK 61

Query: 366 RVSCWLNSAACCLKLKDYQGAIELCSKVI 394
            +  + N + C L + D   A E  S+V+
Sbjct: 62  NIPLYANMSQCYLNIGDLHEAEETSSEVL 90

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score = 94.8 bits (236), Expect = 9e-23
 Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 5/107 (4%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           +G+  ++++ G   + P+  D V ++Y GTL+DG +FD++  R +PL+F+L    V  G 
Sbjct: 121 TGLVYQVVEAG-KGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGW 177

Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVS 152
             G+  +K  +       +P EL +G  G   +PPNS + F+VEL+ 
Sbjct: 178 TEGLKNIK--KGGKIKLVIPPELAYGKAGVPGIPPNSTLVFDVELLD 222

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 35/136 (25%)

Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
           G+V +++E G+   +P D D V+V Y               +G             L DG
Sbjct: 122 GLVYQVVEAGK-GEAPKDSDTVVVNY---------------KG------------TLIDG 153

Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
             F+   Y   +PL F  D   VI G       +KK     + I  E  +G       + 
Sbjct: 154 KEFDNS-YTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVIPPELAYGK----AGVP 206

Query: 284 TIPSCAKLYYEVEMMD 299
            IP  + L ++VE++D
Sbjct: 207 GIPPNSTLVFDVELLD 222

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score = 93.2 bits (232), Expect = 2e-22
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 6/108 (5%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG++ K++ +G +   P   D VT+ Y G L+DGT FDST     P TF++   QV  G 
Sbjct: 106 SGLQYKVINSG-NGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGW 162

Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEG-RDSLPPNSVVQFEVELVS 152
              +  M     + +   +PS L +G       + PN  + F++ L+S
Sbjct: 163 TEALQLMP--AGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLIS 208

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 27/135 (20%), Positives = 40/135 (29%), Gaps = 34/135 (25%)

Query: 168 KILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFE 227
           K++  G     PG  D V V+Y                G            RL DGTVF+
Sbjct: 111 KVINSGN-GVKPGKSDTVTVEY---------------TG------------RLIDGTVFD 142

Query: 228 KKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPS 287
                  +P  F     QVI G       M       + +     +G          I  
Sbjct: 143 -STEKTGKPATFQVS--QVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVG---GPIGP 196

Query: 288 CAKLYYEVEMMDFIK 302
              L +++ ++   K
Sbjct: 197 NETLIFKIHLISVKK 211

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score = 87.1 bits (216), Expect = 4e-20
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 9/108 (8%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
            GI    L  G     P+    V + YVG L DG  FD +     P  F+L    V +G 
Sbjct: 117 DGILMTELTPG-TGPKPDANGRVEVRYVGRLPDGKIFDQS---TQPQWFRL--DSVISGW 170

Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVS 152
            + +  M     A +   +PS+  +G EG  D + P + + FE+EL++
Sbjct: 171 TSALQNMP--TGAKWRLVIPSDQAYGAEGAGDLIDPFTPLVFEIELIA 216

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 29/139 (20%), Positives = 43/139 (30%), Gaps = 37/139 (26%)

Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
           GI+   L  G     P     V V+Y                G            RL DG
Sbjct: 118 GILMTELTPGT-GPKPDANGRVEVRY---------------VG------------RLPDG 149

Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
            +F++      QP  F  D   VI+G       M       + I  +  +G   A     
Sbjct: 150 KIFDQST----QPQWFRLD--SVISGWTSALQNMPTGAKWRLVIPSDQAYGAEGAG---D 200

Query: 284 TIPSCAKLYYEVEMMDFIK 302
            I     L +E+E++   +
Sbjct: 201 LIDPFTPLVFEIELIAVSQ 219

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 89.4 bits (222), Expect = 7e-20
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 1/98 (1%)

Query: 298 MDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDD 357
            DF ++      +    +  +   K  GN  FK+  +E A KKY K    V    +  +D
Sbjct: 203 PDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAED 262

Query: 358 EQKL-VKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394
                ++ + +SC LN  AC LK+ D+QGA++ C + +
Sbjct: 263 ADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 69.7 bits (171), Expect = 2e-14
 Identities = 27/93 (29%), Positives = 35/93 (37%), Gaps = 12/93 (12%)

Query: 302 KEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKL 361
               P          +  + ++EGN LFK G Y  A   Y +A      D +  D     
Sbjct: 12  GPGTPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQD----- 63

Query: 362 VKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394
               +     N AAC LKL+DY  A    SK I
Sbjct: 64  ----QAVLHRNRAACHLKLEDYDKAETEASKAI 92

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169

 Score = 67.7 bits (166), Expect = 9e-14
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
              V +H+   L DGT  +STR+   P  F+LG   ++ GL+  ++ +K  +    TF+L
Sbjct: 28  NSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDK--TTFSL 85

Query: 125 PSELRFG 131
             +  FG
Sbjct: 86  EPDAAFG 92

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGF 273
           V +  +L+DGT  E    +  +P  F   +  +  GL++    +K  +    ++  +  F
Sbjct: 33  VHFTLKLDDGTTAEST-RNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAF 91

Query: 274 G 274
           G
Sbjct: 92  G 92

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Length = 171

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
              V++ Y     DG   D +     PL +  G G + +GL+  +   +  +   F   +
Sbjct: 6   DLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGD--KFDVAV 62

Query: 125 PSELRFG 131
            +   +G
Sbjct: 63  GANDAYG 69

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Length = 171

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGF 273
           ++Y  R EDG + ++       PL+++     +I+GL+      +  +   V +     +
Sbjct: 11  LAYQVRTEDGVLVDES--PVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAY 68

Query: 274 G 274
           G
Sbjct: 69  G 69

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 56.5 bits (137), Expect = 3e-10
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 15/79 (18%)

Query: 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAA 375
           + A ++KE GN  +K   ++ A K Y+KA +    + ++                 N AA
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTY---------------ITNQAA 46

Query: 376 CCLKLKDYQGAIELCSKVI 394
              +  DY    ELC K I
Sbjct: 47  VYFEKGDYNKCRELCEKAI 65

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Length = 151

 Score = 57.0 bits (138), Expect = 4e-10
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 15/80 (18%)

Query: 65  GDEVTIHYVGTLLDGTKFDSTRDR-------------YDPLTFKLGTGQVATGLDNGIIT 111
           G ++ + Y+G L  G  FD++ +              Y+PL F +G GQ+  G +  ++ 
Sbjct: 5   GVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLD 64

Query: 112 MKKRECAVFTFTLPSELRFG 131
           M+  +    T  +P+E  +G
Sbjct: 65  MEVGDE--KTVKIPAEKAYG 82

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Length = 196

 Score = 57.4 bits (139), Expect = 6e-10
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
              V++ Y     DG   D +     PL +  G G + +GL+  +   +  +   F   +
Sbjct: 6   DLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGD--KFDVAV 62

Query: 125 PSELRFG 131
            +   +G
Sbjct: 63  GANDAYG 69

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Length = 196

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGF 273
           ++Y  R EDG + ++       PL+++     +I+GL+      +  +   V +     +
Sbjct: 11  LAYQVRTEDGVLVDES--PVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAY 68

Query: 274 G 274
           G
Sbjct: 69  G 69

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 55.3 bits (134), Expect = 1e-09
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 15/79 (18%)

Query: 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAA 375
           E A  +K +GN  FK G Y  A + YN+A     E+                  + N AA
Sbjct: 11  ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAIL---------------YSNRAA 55

Query: 376 CCLKLKDYQGAIELCSKVI 394
           C  KL ++Q A++ C   I
Sbjct: 56  CLTKLMEFQRALDDCDTCI 74

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 54.9 bits (133), Expect = 1e-09
 Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 15/80 (18%)

Query: 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSA 374
           +E     KE+GN     G  + A + Y++A      +                  + N +
Sbjct: 1   MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVL---------------YSNRS 45

Query: 375 ACCLKLKDYQGAIELCSKVI 394
           A   K  DYQ A E   K +
Sbjct: 46  AAYAKKGDYQKAYEDGCKTV 65

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 15/80 (18%)

Query: 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSA 374
           +    ++KE+GN LFK G Y  A   Y++      ++                  + N A
Sbjct: 1   MSQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVG---------------YSNKA 45

Query: 375 ACCLKLKDYQGAIELCSKVI 394
              +KL +Y  AI++C + +
Sbjct: 46  MALIKLGEYTQAIQMCQQGL 65

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 19/93 (20%)

Query: 302 KEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKL 361
           +++ P +    G ++ A   K + N  FK   YE A K Y++A +    +  +       
Sbjct: 1   RDEPPAD----GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY------- 49

Query: 362 VKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394
                   + N +   L+ + Y  A+   ++ I
Sbjct: 50  --------YGNRSLAYLRTECYGYALGDATRAI 74

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 54.9 bits (133), Expect = 1e-09
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 15/86 (17%)

Query: 309 MNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVS 368
           + ++     A R K EGN   K   +E A   Y KA +    +  +              
Sbjct: 3   LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVY-------------- 48

Query: 369 CWLNSAACCLKLKDYQGAIELCSKVI 394
            + N AA   KL +Y GA++ C + I
Sbjct: 49  -FCNRAAAYSKLGNYAGAVQDCERAI 73

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Length = 151

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 2/74 (2%)

Query: 58  DWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKREC 117
           + D         I Y       +    +    +PL F +GT Q+  GL+  ++  +  E 
Sbjct: 3   NHDLESIKQAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEW 62

Query: 118 AVFTFTLPSELRFG 131
                 +  E  +G
Sbjct: 63  --EEVVIAPEEAYG 74

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 15/79 (18%)

Query: 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAA 375
           +AA  +K+ GN  +K   +E+A   Y+KA +    + +F               + N AA
Sbjct: 6   DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITF---------------YNNKAA 50

Query: 376 CCLKLKDYQGAIELCSKVI 394
              + K +   ++ C K +
Sbjct: 51  VYFEEKKFAECVQFCEKAV 69

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 15/79 (18%)

Query: 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAA 375
            +A   KE+GN LF   KY  A   Y +A         +               + N A 
Sbjct: 7   PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY---------------YTNRAL 51

Query: 376 CCLKLKDYQGAIELCSKVI 394
           C LK++  + A+  C + +
Sbjct: 52  CYLKMQQPEQALADCRRAL 70

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 54.5 bits (132), Expect = 2e-09
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 15/79 (18%)

Query: 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAA 375
           + A   K +GN  F+ G Y +A K Y +A     +D                  + N AA
Sbjct: 14  DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKL---------------YSNRAA 58

Query: 376 CCLKLKDYQGAIELCSKVI 394
           C  KL ++Q A++ C + I
Sbjct: 59  CYTKLLEFQLALKDCEECI 77

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 19/77 (24%), Positives = 25/77 (32%), Gaps = 15/77 (19%)

Query: 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACC 377
           A   + EG   F    +  A K Y +      ED                  + N AA  
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG---------------YSNRAAAL 48

Query: 378 LKLKDYQGAIELCSKVI 394
            KL  +  AI  C+K I
Sbjct: 49  AKLMSFPEAIADCNKAI 65

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 56.5 bits (136), Expect = 4e-09
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 15/78 (19%)

Query: 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAAC 376
           +A   KE+GN LF   KY  A   Y +A         +               + N A C
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY---------------YTNRALC 47

Query: 377 CLKLKDYQGAIELCSKVI 394
            LK++  + A+  C + +
Sbjct: 48  YLKMQQPEQALADCRRAL 65

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 54.4 bits (131), Expect = 4e-09
 Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 15/79 (18%)

Query: 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAA 375
             + + K EGN      +Y +A   Y +A      +  +                 N AA
Sbjct: 9   PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIY---------------LSNRAA 53

Query: 376 CCLKLKDYQGAIELCSKVI 394
                  ++ A E      
Sbjct: 54  AYSASGQHEKAAEDAELAT 72

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} PDB: 3pra_A Length = 157

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 16/80 (20%)

Query: 65  GDEVTIHYVGTLLDGTKFDSTRDR-------------YDPLTFKLGTGQVATGLDNGIIT 111
           G  V I Y G + DG  FD+T +              Y P+    G GQV  GLD  I+ 
Sbjct: 5   GKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILE 63

Query: 112 MKKRECAVFTFTLPSELRFG 131
           M   E       LP E  FG
Sbjct: 64  MDVGE--EREVVLPPEKAFG 81

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 11/85 (12%)

Query: 310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSC 369
            +  +++   +  E    L ++G+Y  A  KY      +  + S  +   +         
Sbjct: 226 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV---MKTEPSVAEYTVRS-------- 274

Query: 370 WLNSAACCLKLKDYQGAIELCSKVI 394
                 C  K +    AI +CS+V+
Sbjct: 275 KERICHCFSKDEKPVEAIRICSEVL 299

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 18/70 (25%), Positives = 29/70 (41%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G+LL K GK + A   + K       +    + E +LVK+  +    + A       DY 
Sbjct: 78  GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT 137

Query: 385 GAIELCSKVI 394
            AI    K++
Sbjct: 138 AAITFLDKIL 147

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 15/73 (20%)

Query: 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK 381
            E G  L   G+   A  +++ A   V  D                  +   A   L + 
Sbjct: 7   LELGKKLLAAGQLADALSQFHAA---VDGDPDNYI------------AYYRRATVFLAMG 51

Query: 382 DYQGAIELCSKVI 394
             + A+   +KVI
Sbjct: 52  KSKAALPDLTKVI 64

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 11/86 (12%)

Query: 309 MNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVS 368
             +  +++   +  E    L ++G+Y  A  KY                         V 
Sbjct: 248 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSI-----------AEYTVR 296

Query: 369 CWLNSAACCLKLKDYQGAIELCSKVI 394
                  C  K +    AI +CS+V+
Sbjct: 297 SKERICHCFSKDEKPVEAIRVCSEVL 322

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 15/83 (18%)

Query: 312 QGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWL 371
              +    +  E G  L   G+   A  +++ A D   ++                  + 
Sbjct: 20  FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN---------------YIAYY 64

Query: 372 NSAACCLKLKDYQGAIELCSKVI 394
             A   L +   + A+   +KVI
Sbjct: 65  RRATVFLAMGKSKAALPDLTKVI 87

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 17/70 (24%), Positives = 29/70 (41%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G+LL K GK + A   + K       +    + + +L+KS  +    + A       DY 
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160

Query: 385 GAIELCSKVI 394
            AI    K++
Sbjct: 161 AAIAFLDKIL 170

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 15/82 (18%)

Query: 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLN 372
           G ++ A   K + N  FK   YE A K Y++A +    +  +               + N
Sbjct: 1   GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY---------------YGN 45

Query: 373 SAACCLKLKDYQGAIELCSKVI 394
            +   L+ + Y  A+   ++ I
Sbjct: 46  RSLAYLRTECYGYALGDATRAI 67

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A Length = 231

 Score = 49.8 bits (119), Expect = 3e-07
 Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 16/80 (20%)

Query: 65  GDEVTIHYVGTLLDGTKFDSTRDR-------------YDPLTFKLGTGQVATGLDNGIIT 111
           G  V I Y G + DG  FD+T +              Y P+    G GQV  GLD  I+ 
Sbjct: 5   GKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILE 63

Query: 112 MKKRECAVFTFTLPSELRFG 131
           M   E       LP E  FG
Sbjct: 64  MDVGEE--REVVLPPEKAFG 81

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A* Length = 158

 Score = 48.4 bits (116), Expect = 5e-07
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
              VTI Y   + +G   D        L++  G   +  GL+  +   ++ E   F   +
Sbjct: 6   DKVVTIRYTLQV-EGEVLDQG-----ELSYLHGHRNLIPGLEEALEGREEGE--AFQAHV 57

Query: 125 PSELRFG 131
           P+E  +G
Sbjct: 58  PAEKAYG 64

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 16/73 (21%)

Query: 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK 381
           K++GN  F+N KY+ A K YN A +   ED  F               + N +AC + + 
Sbjct: 10  KDKGNQFFRNKKYDDAIKYYNWALEL-KEDPVF---------------YSNLSACYVSVG 53

Query: 382 DYQGAIELCSKVI 394
           D +  +E+ +K +
Sbjct: 54  DLKKVVEMSTKAL 66

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 10/73 (13%), Positives = 17/73 (23%), Gaps = 16/73 (21%)

Query: 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK 381
           +  G   F       A +   KA                +    RV+ ++  A       
Sbjct: 241 EHTGIFKFLKNDPLGAHEDIKKA----------------IELFPRVNSYIYMALIMADRN 284

Query: 382 DYQGAIELCSKVI 394
           D         K +
Sbjct: 285 DSTEYYNYFDKAL 297

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 9/82 (10%), Positives = 21/82 (25%), Gaps = 9/82 (10%)

Query: 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLN 372
           G  + A    +    L +     +A   Y +AA     +                     
Sbjct: 110 GTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEER---------LRQAAELIGK 160

Query: 373 SAACCLKLKDYQGAIELCSKVI 394
           ++   ++ + +  A     K  
Sbjct: 161 ASRLLVRQQKFDEAAASLQKEK 182

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 15/73 (20%)

Query: 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK 381
           + EG   F    +  A K Y +    +                     + N AA   KL 
Sbjct: 143 RLEGKEYFTKSDWPNAVKAYTEM---IKRAPEDAR------------GYSNRAAALAKLM 187

Query: 382 DYQGAIELCSKVI 394
            +  AI  C+K I
Sbjct: 188 SFPEAIADCNKAI 200

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 16/73 (21%)

Query: 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK 381
           K EGN  +K  +++ A + YNKA + + +D ++                 N AA   +  
Sbjct: 9   KAEGNKFYKARQFDEAIEHYNKAWE-LHKDITY---------------LNNRAAAEYEKG 52

Query: 382 DYQGAIELCSKVI 394
           +Y+ AI   +  +
Sbjct: 53  EYETAISTLNDAV 65

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 15/87 (17%)

Query: 308 EMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRV 367
            ++   +   A + K  GN  F    +  A K Y  A +    +  F             
Sbjct: 15  GLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF------------- 61

Query: 368 SCWLNSAACCLKLKDYQGAIELCSKVI 394
             + N +AC +   D +  IE  +K +
Sbjct: 62  --YSNISACYISTGDLEKVIEFTTKAL 86

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 8/70 (11%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G + F     + A   +  A   V +  S         +    + W N      KLK Y 
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQS--------NEKPWAATWANLGHAYRKLKMYD 533

Query: 385 GAIELCSKVI 394
            AI+  ++ +
Sbjct: 534 AAIDALNQGL 543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G + F+NG+++ A K +  A + +   G+      ++          N    C KLK Y 
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGN------EVTVDKWEPLLNNLGHVCRKLKKYA 253

Query: 385 GAIELCSKVI 394
            A++   + +
Sbjct: 254 EALDYHRQAL 263

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 15/72 (20%)

Query: 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD 382
             G   ++ GK++ A K +         D                  +L   AC   L  
Sbjct: 23  ALGFNQYQAGKWDDAQKIFQAL---CMLDHYDAR------------YFLGLGACRQSLGL 67

Query: 383 YQGAIELCSKVI 394
           Y+ A++  S   
Sbjct: 68  YEQALQSYSYGA 79

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 39.1 bits (90), Expect = 7e-04
 Identities = 12/86 (13%), Positives = 25/86 (29%), Gaps = 3/86 (3%)

Query: 309 MNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVS 368
           M    ++  A     +       G+Y+ A     +A   +    +   +E          
Sbjct: 2   MKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRA---MEISHTMPPEEAFDHAGFDAF 58

Query: 369 CWLNSAACCLKLKDYQGAIELCSKVI 394
           C    A     L+ +  A+    K +
Sbjct: 59  CHAGLAEALAGLRSFDEALHSADKAL 84

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	403
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	100.0
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	100.0
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	100.0
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.97
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.96
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.92
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.91
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	99.91
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	99.9
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.9
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	99.9
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	99.9
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	99.9
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	99.89
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	99.89
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	99.89
2ppn_A	107	FK506-binding protein 1A; high resolution protein	99.89
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	99.89
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	99.89
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	99.88
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	99.88
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	99.88
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.88
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	99.88
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.88
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	99.88
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	99.88
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	99.88
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	99.87
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.87
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.87
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	99.87
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	99.86
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	99.86
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	99.86
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	99.86
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	99.85
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	99.85
2ppn_A	107	FK506-binding protein 1A; high resolution protein	99.85
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	99.85
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	99.84
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	99.83
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	99.83
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	99.83
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	99.82
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.82
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.82
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	99.82
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	99.82
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	99.82
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	99.79
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	99.79
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	99.78
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	99.78
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	99.77
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	99.77
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	99.77
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	99.75
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	99.73
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	99.72
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	99.72
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	99.72
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	99.69
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	99.63
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	99.61
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	99.54
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	99.5
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	99.48
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	99.45
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	99.44
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	99.42
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	99.41
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	99.39
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.31
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	99.26
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	99.15
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.11
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.08
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.05
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.05
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	98.97
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	98.94
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.79
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.69
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	98.66
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.63
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.47
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.47
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.46
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.46
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.34
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.3
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.28
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.28
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.28
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.27
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.26
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.26
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.23
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.2
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.2
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.19
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.19
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.18
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.14
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.13
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.12
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.11
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.06
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.03
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.0
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.99
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.99
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.99
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.99
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.96
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.94
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.93
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	97.92
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	97.9
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	97.9
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.89
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.88
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	97.88
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.83
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.83
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.83
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.82
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.78
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.77
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.76
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.75
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.75
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.73
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	97.72
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	97.68
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.67
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.67
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.66
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	97.66
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.64
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.63
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.63
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	97.62
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	97.61
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	97.61
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.6
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.59
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.59
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.58
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.51
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.51
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.5
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.5
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.48
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.45
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.42
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.42
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.42
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.42
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.42
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.41
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.38
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.37
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.34
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.33
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.33
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.32
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.27
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.26
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.25
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.22
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.2
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.2
4g1t_A	472	Interferon-induced protein with tetratricopeptide	97.2
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.19
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.19
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.17
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.16
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.15
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.14
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.13
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.12
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.12
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.11
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.11
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	97.09
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.07
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	97.05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	97.04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.04
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.02
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.0
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.0
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	96.99
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	96.99
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	96.97
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	96.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	96.94
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	96.94
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	96.93
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	96.92
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	96.9
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	96.9
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	96.9
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	96.88
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	96.86
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	96.84
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	96.84
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.82
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	96.82
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.82
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	96.81
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.81
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.8
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	96.78
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	96.76
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	96.73
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	96.71
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	96.7
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	96.68
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	96.65
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	96.64
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	96.64
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	96.63
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	96.56
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	96.54
2kat_A	115	Uncharacterized protein; NESG, structure, structur	96.48
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	96.47
4g1t_A	472	Interferon-induced protein with tetratricopeptide	96.39
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	96.39
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.38
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	96.35
2gw1_A	514	Mitochondrial precursor proteins import receptor;	96.28
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.28
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	96.2
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	95.66
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	95.62
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	95.54
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	95.52
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	95.49
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	95.37
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	95.33
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	95.19
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	95.17
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	95.15
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	95.0
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	94.86
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	94.79
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	94.57
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	94.39
1klx_A	138	Cysteine rich protein B; structural genomics, heli	94.2
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	94.07
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	93.63
2l6j_A	111	TPR repeat-containing protein associated with HSP;	93.5
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	93.41
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	93.37
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	93.32
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	93.18
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	93.07
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	92.82
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	92.29
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	92.29
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.25
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	92.04
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	91.95
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	91.95
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	91.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	91.66
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	91.48
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	91.09
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	90.81
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	90.31
1klx_A	138	Cysteine rich protein B; structural genomics, heli	90.12
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	89.65
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	88.66
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	88.6
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	88.48
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	87.7
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	87.51
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	87.3
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	87.27
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	86.04
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	85.55
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	85.22
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	83.73
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	83.67
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	83.01
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	82.83
2vkj_A	106	TM1634; membrane protein, TPR motif joint center f	82.56
2dl1_A	116	Spartin; SPG20, MIT, structural genomics, NPPSFA,	82.16
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	80.47

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=100.00  E-value=1.9e-50  Score=406.86  Aligned_cols=327  Identities=34%  Similarity=0.585  Sum_probs=275.0

Q ss_pred             cCCCcee-ecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCccc
Q 015659           36 KVGEERG-LGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKK  114 (403)
Q Consensus        36 ~~~~~~~-~~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~  114 (403)
                      ..+.++. .+++|++|+++++|+|...|..||.|+|||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++
T Consensus        20 ~~~~~~~~~~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~~~g~~~dss~~~~~p~~~~~g~~~~i~g~~~~l~~m~~   99 (457)
T 1kt0_A           20 EQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKR   99 (457)
T ss_dssp             -------------CEEEC--------CCCBTCEEEEEEEEEC-----CBC------CEEEETTSTTSCHHHHHHHTTCCT
T ss_pred             CCcccccCCCCCcEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEeccCCCCCCeEEEeCCcchhhHHHHHHhhCCC
Confidence            3455553 579999999999999954599999999999999989999999998889999999999999999999999999


Q ss_pred             CcEEEEEEEcCCCCCCCCCCCC-CCCCCCeEEEEEEeccceeeeccCCCcceeeEEeecCCcCCCCCCCCceEEEEEeee
Q 015659          115 RECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVML  193 (403)
Q Consensus       115 Ge~~~v~~~vp~~~ayg~~~~~-~ip~~~~l~~~v~l~~~~~~~dv~~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l  193 (403)
                      |++++|  +|||+++||..|.+ .||++++++|+|+|+++... ++..|++++++++.+|.++..|..++.|++|     
T Consensus       100 Ge~~~~--~i~~~~~yg~~g~~~~i~~~~~l~~~v~l~~~~~~-~~~~dg~~~k~i~~~g~~~~~p~~g~~V~v~-----  171 (457)
T 1kt0_A          100 GEICHL--LCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGE-DLFEDGGIIRRTKRKGEGYSNPNEGATVEIH-----  171 (457)
T ss_dssp             TCEEEE--EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEECE-ETTSSSSEEEEEEECCBCSCCCCTTCEEEEE-----
T ss_pred             CCEEEE--EEChHHhccccCCCCCCCCCCcEEEEEeeceeecc-cccCCcceEEEEEecCCCCCCCCCCCEEEEE-----
Confidence            999999  99999999999876 89999999999999998754 6778999999999999999999999988876     


Q ss_pred             CCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCCCeEEEcCCC---CcchHHHHHHcccCCCcEEEEEEcCC
Q 015659          194 GDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEE---QVIAGLDRVAATMKKEEWAIVTINHE  270 (403)
Q Consensus       194 ~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~~---~v~~gl~~~l~~m~~Ge~~~v~i~~~  270 (403)
                                            |+|++ +|++||++      +++|.+|++   .++++|+.|+..|+.||++.|.++|.
T Consensus       172 ----------------------y~g~~-~g~~f~~~------~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~  222 (457)
T 1kt0_A          172 ----------------------LEGRC-GGRMFDCR------DVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPR  222 (457)
T ss_dssp             ----------------------EEEEE-TTEEEEEE------EEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGG
T ss_pred             ----------------------EEEEe-CCeEEecC------ceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcc
Confidence                                  55666 77889875      599999976   48999999999999999999999999


Q ss_pred             CCCCCcccccCCCCCCCCCeEEEEEEEeeeccCcCccccCchHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc
Q 015659          271 YGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE  350 (403)
Q Consensus       271 ~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~~~~~~~~m~~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~  350 (403)
                      ++|+..+...  ..|||++.+.|.++|.++++....|.+..+++...+..++..|+.+|+.|+|..|+..|++|+.+...
T Consensus       223 ~ay~~~g~~~--~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~  300 (457)
T 1kt0_A          223 YGFGEAGKPK--FGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEM  300 (457)
T ss_dssp             GTTCSSCBGG--GTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             cccCCCCCcc--cCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc
Confidence            9999988632  47999999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             CCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          351 DGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      .....+++..++..+...+++|+|.||+++++|.+|+.+|++||+++|.|.
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~  351 (457)
T 1kt0_A          301 EYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE  351 (457)
T ss_dssp             CCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             cccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH
Confidence            766778888889999999999999999999999999999999999999874

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=100.00  E-value=2.4e-47  Score=371.06  Aligned_cols=264  Identities=55%  Similarity=0.898  Sum_probs=127.3

Q ss_pred             cCCCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccC
Q 015659           36 KVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKR  115 (403)
Q Consensus        36 ~~~~~~~~~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~G  115 (403)
                      +.+++..++++|++|+++++|+|+..|+.||.|++||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++|
T Consensus         1 ~~~~~~~~~~~Gl~~~i~~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~~~lG~g~~i~g~e~~l~gm~~G   80 (356)
T 3jxv_A            1 KVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKG   80 (356)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCccceECCCCeEEEEEEeecCCccCCCCCEEEEEEEEEECCCCEEEEcccCCCcEEEEeCCCccchHHHHHHhcCCCC
Confidence            35677888999999999999999778999999999999999999999999988899999999999999999999999999


Q ss_pred             cEEEEEEEcCCCCCCCCCCCC-CCCCCCeEEEEEEeccceeeeccCCCcceeeEEeecCCcCCCCCCCCceEEEEEeeeC
Q 015659          116 ECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLG  194 (403)
Q Consensus       116 e~~~v~~~vp~~~ayg~~~~~-~ip~~~~l~~~v~l~~~~~~~dv~~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~  194 (403)
                      ++++|  +|||++|||..+.+ .||++++++|+|+|+++....|+..|+++.++++++|.+|.+|..++.|++||+.++.
T Consensus        81 e~~~~--~ip~~~aYG~~g~~~~Ip~~~~l~f~vel~~~~~~~di~~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g~l~  158 (356)
T 3jxv_A           81 ENALF--TIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLE  158 (356)
T ss_dssp             ---------------------------------------CCEEETTSSSSEEEEEEECCBSSCCCCTTCEEEEEEEEEET
T ss_pred             CEEEE--EEChHHhCCCCCCCCCcCCCCEEEEEeeEEeeecccccccCceeEEEEEecCcccCCCCCCCEEEEEEEEEEC
Confidence            99999  99999999999988 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeecCC------CC---------------------------------ce----------------------------
Q 015659          195 DGTMVAKTP------EE---------------------------------GV----------------------------  207 (403)
Q Consensus       195 ~~~~v~~~~------~~---------------------------------g~----------------------------  207 (403)
                      +++++.++.      ++                                 |.                            
T Consensus       159 dgt~~~~~~~~~f~~g~~~v~~gl~~~l~~m~~GE~~~~~v~p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~~v~  238 (356)
T 3jxv_A          159 DGTVVSKSEGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVT  238 (356)
T ss_dssp             TSCEEEEEEEEEEEGGGCSSSHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEECEE
T ss_pred             CCCEEeccCCEEEEeCCCCcchHHHHHHhhCCCCCEEEEEEChHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEeccc
Confidence            988765431      00                                 00                            


Q ss_pred             --------------------eEEeec---eEEEEeeccceEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccCCCcEEE
Q 015659          208 --------------------EFYLKD---VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAI  264 (403)
Q Consensus       208 --------------------~~~~~~---v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~  264 (403)
                                          ....++   |||+|++.||++||++.+..++|+.|.+|.+++|+||+.+|.+|++||+++
T Consensus       239 dv~~d~~~~~~i~~~g~g~~~~~~gd~V~v~y~g~l~dG~~fd~~~~~~~~p~~f~~G~g~~i~G~e~~l~gm~~Ge~~~  318 (356)
T 3jxv_A          239 EIGDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVAL  318 (356)
T ss_dssp             EESTTCCEEEEEEECCBSSCCCCTTCEEEEEEEEEESSSCEEEEESCTTSCCCEEETTTTSSCHHHHHHHTTCCBTCEEE
T ss_pred             ccccccceeEEeeecccccCCCCCCCEEEEEEEEEECCCCEEeeccccCCcCEEEEECCCccchHHHHHHhCCCCCCEEE
Confidence                                000000   999999999999999845668999999999999999999999999999999


Q ss_pred             EEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeecc
Q 015659          265 VTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK  302 (403)
Q Consensus       265 v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~~  302 (403)
                      |+|||.+|||+.+... ...|||+++|+|+|+|++|++
T Consensus       319 v~ip~~~aYG~~~~~~-~~~Ip~~~~l~f~vel~~~~~  355 (356)
T 3jxv_A          319 VTIPPEYAYGSTESKQ-DAIVPPNSTVIYEVELVSFVK  355 (356)
T ss_dssp             EEECGGGTTTTSCEES-SSEECTTCCEEEEEEEEEEEC
T ss_pred             EEEChHHccCCCCcCC-CCcCCcCCeEEEEEEEEEEEc
Confidence            9999999999987532 467999999999999999975

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=100.00  E-value=3.8e-42  Score=322.36  Aligned_cols=233  Identities=37%  Similarity=0.607  Sum_probs=206.3

Q ss_pred             CCCcee-ecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccC
Q 015659           37 VGEERG-LGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKR  115 (403)
Q Consensus        37 ~~~~~~-~~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~G  115 (403)
                      .+.++. .+++||+|+++++|+|...|..||.|+|||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++|
T Consensus        41 ~~~di~~~~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~G  120 (280)
T 1q1c_A           41 EGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVG  120 (280)
T ss_dssp             CCEECCSSCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTT
T ss_pred             cccccccCCCCceEEEEEeCCCCCcCCCCCCEEEEEEEEEECCCCEEEecccCCCCEEEEECCcChhHHHHHHHhcCCCC
Confidence            344443 3799999999999999545999999999999999999999999987799999999999999999999999999


Q ss_pred             cEEEEEEEcCCCCCCCCCCCC-CCCCCCeEEEEEEeccceeeeccC--CCcceeeEEeecCCcCCCCCCCCceEEEEEee
Q 015659          116 ECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWITVVDLS--KDGGIVKKILEKGERDASPGDLDEVLVKYQVM  192 (403)
Q Consensus       116 e~~~v~~~vp~~~ayg~~~~~-~ip~~~~l~~~v~l~~~~~~~dv~--~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~  192 (403)
                      ++++|  .|||++|||..+.+ .||++++++|+|+|+++.. .++.  .|+++.++++++|.|+..|..++.|+++|   
T Consensus       121 e~~~v--~ipp~~aYG~~g~~~~Ip~~~~lvf~Vel~~i~~-~~~~~~~d~gl~~~il~~G~G~~~~~~gd~V~i~y---  194 (280)
T 1q1c_A          121 EVCHI--TCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKG-EDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVAL---  194 (280)
T ss_dssp             CEEEE--EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC-EECCTTCSSSEEEEEEECCSCSCCCCTTCEEEEEE---
T ss_pred             CEEEE--EECcHHhCCCcCccCCCCCCCcEEEEEEeeeecc-cccccccccceeEEeeecccccccccCCceEEEEE---
Confidence            99999  99999999999876 8999999999999999875 3566  88999999999999998888999998775   


Q ss_pred             eCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCCCeEEEcCCCC---cchHHHHHHcccCCCcEEEEEEcC
Q 015659          193 LGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQ---VIAGLDRVAATMKKEEWAIVTINH  269 (403)
Q Consensus       193 l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~~~---v~~gl~~~l~~m~~Ge~~~v~i~~  269 (403)
                                              +|++ +|++||++      |+.|.+|.+.   +++||+.+|.+|++||+++|+|||
T Consensus       195 ------------------------~g~~-dG~~fd~~------~~~f~lG~g~~~~~i~G~e~~l~gmk~Ge~~~v~ip~  243 (280)
T 1q1c_A          195 ------------------------EGYY-KDKLFDQR------ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKP  243 (280)
T ss_dssp             ------------------------EEEE-TTEEEEEE------EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECG
T ss_pred             ------------------------EEEe-CCEEEecC------CeEEEecCCcccccchhHHHHHhCCCCCcEEEEEECh
Confidence                                    4555 67888874      8999999987   599999999999999999999999


Q ss_pred             CCCCCCcccccCCCCCCCCCeEEEEEEEeeeccCcCccc
Q 015659          270 EYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWE  308 (403)
Q Consensus       270 ~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~~~~~~~~  308 (403)
                      +++||+.+..  ...||++++|+|+|+|++|++.++.|+
T Consensus       244 ~~~yG~~~~~--~~~IP~~~~l~f~V~L~~i~~~~~~W~  280 (280)
T 1q1c_A          244 SYAFGSVGKE--KFQIPPNAELKYELHLKSFEKAKESWE  280 (280)
T ss_dssp             GGTTTTTCBG--GGTBCTTCCEEEEEEEEEEECCCC---
T ss_pred             hHcCCcCCCc--cCccCCCCeEEEEEEEEEEeCCCCCCC
Confidence            9999998762  136999999999999999999998885

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.97  E-value=2.7e-30  Score=249.78  Aligned_cols=210  Identities=32%  Similarity=0.526  Sum_probs=179.4

Q ss_pred             CcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeec-cceEEeecCCCCCCCeEEE
Q 015659          162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE-DGTVFEKKGYDGEQPLEFI  240 (403)
Q Consensus       162 d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~-~g~~fd~s~~~~~~p~~~~  240 (403)
                      +.++.++++++|.|. .|..++.|+||                           |+|++. +|++||++ +..++|++|.
T Consensus        48 ~~~~~~~~~~~g~g~-~~~~gd~v~v~---------------------------y~g~~~~~g~~fd~~-~~~~~~~~~~   98 (338)
T 2if4_A           48 DEKVSKQIIKEGHGS-KPSKYSTCFLH---------------------------YRAWTKNSQHKFEDT-WHEQQPIELV   98 (338)
T ss_dssp             ETTEEEEEEECCBSC-CCCTTCEEEEE---------------------------EEEEETTTCCCCEEH-HHHTCCEEEE
T ss_pred             CCCeEEEEEeCCCCC-CCCCCCEEEEE---------------------------EEEEEcCCCcEeecc-cCCCCCeEEE
Confidence            457899999999997 78889999876                           455554 48899998 6778999999


Q ss_pred             cCCC-CcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeccCc---CccccCchHHHH
Q 015659          241 TDEE-QVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEK---VPWEMNNQGKIE  316 (403)
Q Consensus       241 lG~~-~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~~~~---~~~~m~~~e~~~  316 (403)
                      +|.+ .+|+||+.+|.+|++||++.|+||+.++||..+... ++.||++++++|.|+|+++....   ..|.|+.++++.
T Consensus        99 lg~~~~~i~g~e~~l~~m~~Ge~~~~~i~~~~~yg~~~~~~-~~~ip~~~~l~f~v~L~~~~~~~e~~~~~~~~~~~~~~  177 (338)
T 2if4_A           99 LGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFS-FPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIG  177 (338)
T ss_dssp             TTSCCGGGHHHHHHHHHCCBTCEEEEEECGGGSSCSSCCCS-SSCCCTTCCEEEEEEEEEEECCCCCBTTTBCCHHHHHH
T ss_pred             cCCCCcccHHHHHHHhcCCCCCeEEEEECHHHhcCCCCCCC-CCCCCCCCcEEEEEEEEEecCCccccccccCCHHHHHH
Confidence            9998 899999999999999999999999999999987532 36799999999999999998744   478899999999


Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCC--CCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHH
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG--SFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI  394 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~--~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL  394 (403)
                      .+..++..|+.+|+.|+|.+|+..|++|+.+.....  ............+...+++|+|.||+++++|.+|+.+|++||
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al  257 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL  257 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999854321  112222344456666799999999999999999999999999


Q ss_pred             hcccccC
Q 015659          395 VEREAAR  401 (403)
Q Consensus       395 ~~dp~~~  401 (403)
                      +++|.|.
T Consensus       258 ~~~p~~~  264 (338)
T 2if4_A          258 TEEEKNP  264 (338)
T ss_dssp             HHCTTCH
T ss_pred             HhCCCCH
Confidence            9999874

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.96  E-value=1.5e-27  Score=230.27  Aligned_cols=211  Identities=33%  Similarity=0.561  Sum_probs=188.3

Q ss_pred             eeeccCCCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCC
Q 015659          155 TVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGE  234 (403)
Q Consensus       155 ~~~dv~~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~  234 (403)
                      ...+++.|+++.++++++|.|..+|..++.|++|                           |+|++ +|++||++     
T Consensus        17 ~~~~~~~~~~~~~~~~~~g~g~~~p~~~~~v~v~---------------------------y~g~~-~g~~fd~~-----   63 (336)
T 1p5q_A           17 RGSHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVA---------------------------LEGYY-KDKLFDQR-----   63 (336)
T ss_dssp             -----CCTTSEEEEEEECCCCSCCCCTTCEEEEE---------------------------EEEEE-TTEEEEEE-----
T ss_pred             cceeecCCCcEEEEEEeCCCCCCCCCCCCeEEEE---------------------------EEEEE-CCEEEecC-----
Confidence            3556778999999999999999889999988876                           55666 78899987     


Q ss_pred             CCeEEEcCCCC---cchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeccCcCccccCc
Q 015659          235 QPLEFITDEEQ---VIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNN  311 (403)
Q Consensus       235 ~p~~~~lG~~~---v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~~~~~~~~m~~  311 (403)
                       |+.|.+|.|.   ++++|+.||..|+.||++.|.++|+++||..|...  ..||+++.+.|+++|.+++.....|.+..
T Consensus        64 -~~~f~lG~g~~~~~~~~~e~al~~~~~Ge~~~l~i~p~~ayg~~g~~~--~~i~~~~~l~f~~~L~~~~~A~~~~~~a~  140 (336)
T 1p5q_A           64 -ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEK--FQIPPNAELKYELHLKSFEKAKESWEMNS  140 (336)
T ss_dssp             -EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECTTTTTTTTCBGG--GTBCSSCCEEEEEEEEEEECCCCGGGCCH
T ss_pred             -CeEEEeCCCCccccchHHHHHHhcCCCCCeEEEEECCccccCcCCCCc--cCCCCCCeEEEEEEEeecccccchhcCCH
Confidence             8999999886   59999999999999999999999999999988721  26999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHH
Q 015659          312 QGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCS  391 (403)
Q Consensus       312 ~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~  391 (403)
                      +.....+..+...|+.+|+.|+|.+|+..|++|+.+........++...++.++...+++|+|.||+++++|.+|+.+|+
T Consensus       141 ~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~  220 (336)
T 1p5q_A          141 EEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCN  220 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            98999999999999999999999999999999999877666666777888899999999999999999999999999999


Q ss_pred             HHHhcccccC
Q 015659          392 KVIVEREAAR  401 (403)
Q Consensus       392 ~aL~~dp~~~  401 (403)
                      +||+++|.+.
T Consensus       221 ~al~~~p~~~  230 (336)
T 1p5q_A          221 KALELDSNNE  230 (336)
T ss_dssp             HHHHHCTTCH
T ss_pred             HHHHhCCCcH
Confidence            9999999874

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.92  E-value=1.5e-24  Score=209.52  Aligned_cols=257  Identities=20%  Similarity=0.236  Sum_probs=175.9

Q ss_pred             CCCccCCCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcC-CcEEeccCCCCCCeeEEeCCC-ccchhHHHhh
Q 015659           32 AAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLD-GTKFDSTRDRYDPLTFKLGTG-QVATGLDNGI  109 (403)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~-g~~~~ss~~~~~p~~~~lG~~-~~~~gl~~al  109 (403)
                      ..+.++..++.++++|+.|+++++|+| ..|..||.|+|||++++.+ |++|++|+.++.|+.|.+|.+ ++++||+.+|
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~g~g-~~~~~gd~v~v~y~g~~~~~g~~fd~~~~~~~~~~~~lg~~~~~i~g~e~~l  113 (338)
T 2if4_A           35 NVPPKVDSEAEVLDEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGV  113 (338)
T ss_dssp             CCCCCCCSCCEEEETTEEEEEEECCBS-CCCCTTCEEEEEEEEEETTTCCCCEEHHHHTCCEEEETTSCCGGGHHHHHHH
T ss_pred             CCCCCCCcCceeCCCCeEEEEEeCCCC-CCCCCCCEEEEEEEEEEcCCCcEeecccCCCCCeEEEcCCCCcccHHHHHHH
Confidence            334456677788899999999999999 7999999999999999984 999999988779999999999 9999999999


Q ss_pred             cCcccCcEEEEEEEcCCCCCCCCCCC---CCCCCCCeEEEEEEeccceeeeccCCCcceeeEEeecCCcCCCCCCCCceE
Q 015659          110 ITMKKRECAVFTFTLPSELRFGVEGR---DSLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVL  186 (403)
Q Consensus       110 ~~m~~Ge~~~v~~~vp~~~ayg~~~~---~~ip~~~~l~~~v~l~~~~~~~dv~~d~~v~k~il~~G~g~~~p~~~~~V~  186 (403)
                      .+|++|++++|  +|||.++||..+.   +.||+++++.|.|+|+.+....+..             ..|.....     
T Consensus       114 ~~m~~Ge~~~~--~i~~~~~yg~~~~~~~~~ip~~~~l~f~v~L~~~~~~~e~~-------------~~~~~~~~-----  173 (338)
T 2if4_A          114 ASMKSGERALV--HVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGK-------------ARSDMTVE-----  173 (338)
T ss_dssp             HHCCBTCEEEE--EECGGGSSCSSCCCSSSCCCTTCCEEEEEEEEEEECCCCCB-------------TTTBCCHH-----
T ss_pred             hcCCCCCeEEE--EECHHHhcCCCCCCCCCCCCCCCcEEEEEEEEEecCCcccc-------------ccccCCHH-----
Confidence            99999999999  9999999999996   5899999999999998875321100             00000000     


Q ss_pred             EEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCCCeEEEcCC-CCcchHHHHHHcccCCCcEEEE
Q 015659          187 VKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDE-EQVIAGLDRVAATMKKEEWAIV  265 (403)
Q Consensus       187 i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~-~~v~~gl~~~l~~m~~Ge~~~v  265 (403)
                          ........                    ...-|..+.            ..|+ ...+..++.++.......    
T Consensus       174 ----~~~~~a~~--------------------~~~~g~~~~------------~~g~~~~A~~~y~~Al~~~p~~~----  213 (338)
T 2if4_A          174 ----ERIGAADR--------------------RKMDGNSLF------------KEEKLEEAMQQYEMAIAYMGDDF----  213 (338)
T ss_dssp             ----HHHHHHHH--------------------HHHHHHHTC------------SSSCCHHHHHHHHHHHHHSCHHH----
T ss_pred             ----HHHHHHHH--------------------HHHHHHHHH------------hcCCHHHHHHHHHHHHHHhccch----
Confidence                00000000                    000011110            1111 123445555554321000    


Q ss_pred             EEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeccCcCccccCchHHHH--HHHHHHHHhhHhhhcCcHHHHHHHHHH
Q 015659          266 TINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIE--AAGRKKEEGNLLFKNGKYERAGKKYNK  343 (403)
Q Consensus       266 ~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~~~~~~~~m~~~e~~~--~~~~~k~~Gn~~fk~~~~~~A~~~Y~~  343 (403)
                            .|-.                                .-...+.+.  ....+...|..+++.++|.+|+..|++
T Consensus       214 ------~~~~--------------------------------~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~  255 (338)
T 2if4_A          214 ------MFQL--------------------------------YGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI  255 (338)
T ss_dssp             ------HHTC--------------------------------CHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             ------hhhh--------------------------------cccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                  0000                                000111111  123556789999999999999999999


Q ss_pred             HHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccCC
Q 015659          344 AADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAARG  402 (403)
Q Consensus       344 al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~~  402 (403)
                      |+.+-               +....+++|+|.||+++++|++|+.+++++|+++|.|..
T Consensus       256 al~~~---------------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~  299 (338)
T 2if4_A          256 VLTEE---------------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA  299 (338)
T ss_dssp             HHHHC---------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------
T ss_pred             HHHhC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH
Confidence            99972               223568999999999999999999999999999998764

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=99.91  E-value=2.3e-24  Score=182.06  Aligned_cols=117  Identities=38%  Similarity=0.642  Sum_probs=108.9

Q ss_pred             cCCCce-eecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCccc
Q 015659           36 KVGEER-GLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKK  114 (403)
Q Consensus        36 ~~~~~~-~~~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~  114 (403)
                      ..++++ ...++|++|+++++|+|...|..||.|.|||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++
T Consensus        24 ~~~~di~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~  103 (144)
T 3o5e_A           24 EQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKK  103 (144)
T ss_dssp             HHCEECCSSCSSSEEEEEEECCBSSCCCCTTCEEEEEEEEECTTSCEEEESGGGTSCEEEETTSSSSCHHHHHHHTTCCB
T ss_pred             cccccccccCCCeEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEeecccCCCeEEEeCCCcccHHHHHHHhCCCC
Confidence            455666 4579999999999999955899999999999999999999999998889999999999999999999999999


Q ss_pred             CcEEEEEEEcCCCCCCCCCCCC-CCCCCCeEEEEEEeccce
Q 015659          115 RECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI  154 (403)
Q Consensus       115 Ge~~~v~~~vp~~~ayg~~~~~-~ip~~~~l~~~v~l~~~~  154 (403)
                      |++++|  .|||++|||..+.+ .|||+++++|+|+|++++
T Consensus       104 Ge~~~v--~ipp~~aYG~~g~~~~Ipp~~~L~f~VeL~~ik  142 (144)
T 3o5e_A          104 GEICHL--LCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK  142 (144)
T ss_dssp             TCEEEE--EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             CCEEEE--EEChHHCcCCCCCCCCcCCCCeEEEEEEEEEec
Confidence            999999  99999999999976 899999999999999875

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=99.91  E-value=4.7e-24  Score=178.20  Aligned_cols=121  Identities=44%  Similarity=0.746  Sum_probs=104.3

Q ss_pred             cCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEE
Q 015659           44 GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFT  123 (403)
Q Consensus        44 ~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~  123 (403)
                      +++|++|+++++|+|...++.||.|+|||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++|++++|  .
T Consensus        12 ~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~vi~G~e~~l~gm~~Ge~~~v--~   89 (135)
T 1r9h_A           12 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEF--T   89 (135)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEE--E
T ss_pred             CCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEECCCCEEEecCcCCCCEEEEeCCCCccHHHHHHHhcCCCCCEEEE--E
Confidence            79999999999999954799999999999999999999999987678999999999999999999999999999999  9


Q ss_pred             cCCCCCCCCCCCC-CCCCCCeEEEEEEeccceeeeccC--CCcceee
Q 015659          124 LPSELRFGVEGRD-SLPPNSVVQFEVELVSWITVVDLS--KDGGIVK  167 (403)
Q Consensus       124 vp~~~ayg~~~~~-~ip~~~~l~~~v~l~~~~~~~dv~--~d~~v~k  167 (403)
                      |||++|||..+.+ .||++++++|+|+|+++... ++.  .|++++|
T Consensus        90 ip~~~aYG~~g~~~~Ip~~~~l~f~v~l~~i~~~-~l~~~~d~~v~k  135 (135)
T 1r9h_A           90 IRSDYGYGDAGSPPKIPGGATLIFEVELFEWSAE-DISPDRDGTILR  135 (135)
T ss_dssp             ECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC--------------
T ss_pred             EChHHcCCCCCCCCCcCcCCcEEEEEEEEEeecC-CcCcCCCCcccC
Confidence            9999999999875 89999999999999998753 555  6766654

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=99.90  E-value=1.2e-23  Score=172.10  Aligned_cols=108  Identities=41%  Similarity=0.671  Sum_probs=101.6

Q ss_pred             cCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCC-------CCCeeEEeCCCccchhHHHhhcCcccCc
Q 015659           44 GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDR-------YDPLTFKLGTGQVATGLDNGIITMKKRE  116 (403)
Q Consensus        44 ~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~-------~~p~~~~lG~~~~~~gl~~al~~m~~Ge  116 (403)
                      .|+|++|+++++|+|...|+.||.|+|||++++.||++|++|+..       +.|+.|.+|.+++++||+++|.+|++|+
T Consensus         2 ~p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge   81 (119)
T 3kz7_A            2 GPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGE   81 (119)
T ss_dssp             CSCSEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTCCTTC
T ss_pred             CCCccEEEEEEcCCCCCcCCCCCEEEEEEEEEECCCCEEEeccccccccccCCCCEEEEECCCChhHHHHHHHhCCCCCC
Confidence            589999999999999657999999999999999999999999863       4899999999999999999999999999


Q ss_pred             EEEEEEEcCCCCCCCCCCCC--CCCCCCeEEEEEEeccc
Q 015659          117 CAVFTFTLPSELRFGVEGRD--SLPPNSVVQFEVELVSW  153 (403)
Q Consensus       117 ~~~v~~~vp~~~ayg~~~~~--~ip~~~~l~~~v~l~~~  153 (403)
                      +++|  .|||++|||+.+.+  .||++++++|+|+|+++
T Consensus        82 ~~~v--~ip~~~aYG~~g~~~~~Ip~~~~l~f~veL~~i  118 (119)
T 3kz7_A           82 KARL--EIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI  118 (119)
T ss_dssp             EEEE--EECGGGTTCTTCBGGGTBCTTCCEEEEEEEEEE
T ss_pred             EEEE--EECcHHhcCCCCCCCCccCcCCeEEEEEEEEEe
Confidence            9999  99999999999986  79999999999999875

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=99.90  E-value=7.1e-24  Score=175.57  Aligned_cols=116  Identities=38%  Similarity=0.644  Sum_probs=107.6

Q ss_pred             CCCce-eecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccC
Q 015659           37 VGEER-GLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKR  115 (403)
Q Consensus        37 ~~~~~-~~~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~G  115 (403)
                      .++++ ..+++|++|+++++|+|...|+.||.|+|||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++|
T Consensus         9 ~~~di~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~G   88 (128)
T 3o5q_A            9 QGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKG   88 (128)
T ss_dssp             HCEECCSSCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTT
T ss_pred             ccceecccCCCCEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHhcCCCC
Confidence            34555 45899999999999999557999999999999999999999999877799999999999999999999999999


Q ss_pred             cEEEEEEEcCCCCCCCCCCCC-CCCCCCeEEEEEEeccce
Q 015659          116 ECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI  154 (403)
Q Consensus       116 e~~~v~~~vp~~~ayg~~~~~-~ip~~~~l~~~v~l~~~~  154 (403)
                      ++++|  .|||++|||..+.+ .||++++++|+|+|++++
T Consensus        89 e~~~v--~ip~~~aYG~~g~~~~Ip~~~~l~f~vel~~i~  126 (128)
T 3o5q_A           89 EICHL--LCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK  126 (128)
T ss_dssp             CEEEE--EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             CEEEE--EEChHHcCCCCCCCCCcCCCCEEEEEEEEEEec
Confidence            99999  99999999999976 899999999999999875

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=99.90  E-value=1.5e-23  Score=169.87  Aligned_cols=108  Identities=41%  Similarity=0.643  Sum_probs=102.3

Q ss_pred             ecCCCeEEEEEEccCCCCC-CCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEE
Q 015659           43 LGNSGIKKKLLKNGVDWDT-PEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFT  121 (403)
Q Consensus        43 ~~~~g~~~~vl~~G~G~~~-~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~  121 (403)
                      .+++|++|+++++|+| .. ++.||.|++||++++.||++|++++.++.|+.|.+|.+++++||+++|.+|++|++++| 
T Consensus         3 ~~~~g~~~~~~~~G~g-~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~v-   80 (113)
T 1yat_A            3 VIEGNVKIDRISPGDG-ATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARL-   80 (113)
T ss_dssp             ECGGGCEEEEEECCCS-SCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEE-
T ss_pred             CCCCCeEEEEEECCCC-cccCCCCCEEEEEEEEEECCCCEEEecCCCCCcEEEEeCCCCccHHHHHHHhCCCCCCEEEE-
Confidence            4689999999999999 55 99999999999999999999999998778999999999999999999999999999999 


Q ss_pred             EEcCCCCCCCCCCCC-CCCCCCeEEEEEEeccc
Q 015659          122 FTLPSELRFGVEGRD-SLPPNSVVQFEVELVSW  153 (403)
Q Consensus       122 ~~vp~~~ayg~~~~~-~ip~~~~l~~~v~l~~~  153 (403)
                       .|||++|||..+.+ .||++++++|+|+|+++
T Consensus        81 -~ip~~~ayG~~~~~~~Ip~~~~l~f~vel~~i  112 (113)
T 1yat_A           81 -TIPGPYAYGPRGFPGLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             -EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             -EECHHHCcCCCCCCCCcCCCCeEEEEEEEEEe
Confidence             99999999999866 79999999999999876

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=99.90  E-value=5.4e-23  Score=199.59  Aligned_cols=163  Identities=35%  Similarity=0.571  Sum_probs=149.1

Q ss_pred             cCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEE
Q 015659           44 GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFT  123 (403)
Q Consensus        44 ~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~  123 (403)
                      .+.++.++++++|.|+.+|..||.|++||++++.||++|+++    .++.|.+|.+++++||+.+|.+|++||+++|  +
T Consensus       125 ~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g~l~dgt~~~~~----~~~~f~~g~~~v~~gl~~~l~~m~~GE~~~~--~  198 (356)
T 3jxv_A          125 KDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKS----EGVEFTVKDGHLCPALAKAVKTMKKGEKVLL--A  198 (356)
T ss_dssp             SSSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEE----EEEEEEGGGCSSSHHHHHHHTTCCBTCEEEE--E
T ss_pred             cCceeEEEEEecCcccCCCCCCCEEEEEEEEEECCCCEEecc----CCEEEEeCCCCcchHHHHHHhhCCCCCEEEE--E
Confidence            578999999999999899999999999999999999999987    4789999999999999999999999999999  9


Q ss_pred             cCCCCCCCCCCCC------CCCCCCeEEEEEEeccceeeeccCCCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCc
Q 015659          124 LPSELRFGVEGRD------SLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGT  197 (403)
Q Consensus       124 vp~~~ayg~~~~~------~ip~~~~l~~~v~l~~~~~~~dv~~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~  197 (403)
                      |||+++||..|.+      .||+++++.|+|+|+++....++..|.++.++++++|.++..|..++.|++||+.++.+++
T Consensus       199 v~p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~~v~dv~~d~~~~~~i~~~g~g~~~~~~gd~V~v~y~g~l~dG~  278 (356)
T 3jxv_A          199 VKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGT  278 (356)
T ss_dssp             ECGGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEECEEEESTTCCEEEEEEECCBSSCCCCTTCEEEEEEEEEESSSC
T ss_pred             EChHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEecccccccccceeEEeeecccccCCCCCCCEEEEEEEEEECCCC
Confidence            9999999999876      4999999999999999999999999999999999999999999999999999999999998


Q ss_pred             eeecCC---CCceeEEee
Q 015659          198 MVAKTP---EEGVEFYLK  212 (403)
Q Consensus       198 ~v~~~~---~~g~~~~~~  212 (403)
                      ++.++.   ++...+..+
T Consensus       279 ~fd~~~~~~~~p~~f~~G  296 (356)
T 3jxv_A          279 VFLKKGHDEQEPFEFKTD  296 (356)
T ss_dssp             EEEEESCTTSCCCEEETT
T ss_pred             EEeeccccCCcCEEEEEC
Confidence            776552   334555444

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=99.90  E-value=2.7e-23  Score=172.92  Aligned_cols=114  Identities=39%  Similarity=0.650  Sum_probs=106.6

Q ss_pred             CCCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCc
Q 015659           37 VGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRE  116 (403)
Q Consensus        37 ~~~~~~~~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge  116 (403)
                      ....+..+++|++|+++++|+| ..++.||.|+|||++++.||++|++++.+++|+.|.+|.+++++||+++|.+|++|+
T Consensus        19 ~~~~~~~~~~gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~eeaL~gmk~Ge   97 (133)
T 2y78_A           19 SHMTVVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGG   97 (133)
T ss_dssp             TTTCCEECTTSCEEEEEECCSS-CBCCTTSEEEEEEEEEETTSCEEEETTTTTCCEEEETTSSSSCHHHHHHSTTCBTTC
T ss_pred             cCCCcEECCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEeccCcCCCCEEEEeCCCChhHHHHHHHcCCCCCC
Confidence            3344677899999999999999 899999999999999999999999999877999999999999999999999999999


Q ss_pred             EEEEEEEcCCCCCCCCCCCC-CCCCCCeEEEEEEeccc
Q 015659          117 CAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSW  153 (403)
Q Consensus       117 ~~~v~~~vp~~~ayg~~~~~-~ip~~~~l~~~v~l~~~  153 (403)
                      +++|  .|||+++||+.+.+ .|||+++++|+|+|+++
T Consensus        98 ~~~v--~ip~~~aYG~~~~~~~Ipp~~~l~f~VeL~~I  133 (133)
T 2y78_A           98 VRRL--TIPPQLGYGARGAGGVIPPNATLVFEVELLDV  133 (133)
T ss_dssp             EEEE--EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred             EEEE--EECcHHhCCCCCCCCCCCCCCeEEEEEEEEEC
Confidence            9999  99999999999976 79999999999999864

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=99.89  E-value=4.1e-23  Score=170.37  Aligned_cols=114  Identities=28%  Similarity=0.479  Sum_probs=106.3

Q ss_pred             CceeecCCCeEEEEEEccC--CCCCCCCCCEEEEEEEEEEc-CCcEEeccCC--CCCCeeEEeCCCccchhHHHhhcCcc
Q 015659           39 EERGLGNSGIKKKLLKNGV--DWDTPEFGDEVTIHYVGTLL-DGTKFDSTRD--RYDPLTFKLGTGQVATGLDNGIITMK  113 (403)
Q Consensus        39 ~~~~~~~~g~~~~vl~~G~--G~~~~~~gd~V~v~y~~~~~-~g~~~~ss~~--~~~p~~~~lG~~~~~~gl~~al~~m~  113 (403)
                      .++.++++|++|+++++|+  | ..++.||.|.|||++++. ||++|++|+.  .+.|+.|.+|.+++++||+++|.+|+
T Consensus         5 ~~~~~~~~gl~~~~l~~g~~~g-~~~~~gd~V~v~Y~g~~~~dG~~fdss~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~   83 (125)
T 4dip_A            5 MGALIPEPEVKIEVLQKPFICH-RKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMC   83 (125)
T ss_dssp             CGGGCCCCCCEEEEEECCSCCS-CCCCTTCEEEEEEEEEETTTCCEEEEHHHHTTTCCEEEETTSCSSCHHHHHHSTTCC
T ss_pred             CceEECCCCeEEEEEEcCCCCC-CcCCCCCEEEEEEEEEECCCCcEEEEcccCCCCcCEEEEeCCCChhHHHHHHHhCCC
Confidence            4556789999999999998  5 899999999999999999 9999999984  45899999999999999999999999


Q ss_pred             cCcEEEEEEEcCCCCCCCCCCCCCCCCCCeEEEEEEecccee
Q 015659          114 KRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWIT  155 (403)
Q Consensus       114 ~Ge~~~v~~~vp~~~ayg~~~~~~ip~~~~l~~~v~l~~~~~  155 (403)
                      +|++++|  .|||++|||..+.+.||++++++|+|+|+++..
T Consensus        84 ~Ge~~~~--~ip~~~aYG~~g~~~Ip~~~~l~f~vel~~i~~  123 (125)
T 4dip_A           84 VGEKRKL--IIPPALGYGKEGKGKIPPESTLIFNIDLLEIRN  123 (125)
T ss_dssp             TTCEEEE--EECGGGTTTTTCBTTBCTTCCEEEEEEEEEEEC
T ss_pred             CCCEEEE--EEChHHhcCCCCCCCCCCCCeEEEEEEEEEEEc
Confidence            9999999  999999999999889999999999999999853

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=99.89  E-value=7.6e-23  Score=178.86  Aligned_cols=123  Identities=27%  Similarity=0.441  Sum_probs=112.5

Q ss_pred             CCCccCCCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEc-CCcEEeccCCCCCCeeEEeCCC-ccchhHHHhh
Q 015659           32 AAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLL-DGTKFDSTRDRYDPLTFKLGTG-QVATGLDNGI  109 (403)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~-~g~~~~ss~~~~~p~~~~lG~~-~~~~gl~~al  109 (403)
                      ..+.+.++.+..+++|++|+++++|+| ..|..||.|+|||++++. +|++|++|+.++.|+.|.+|.+ ++++||+++|
T Consensus        35 ~~p~~~~~~~~~~~~gl~~~vl~~G~G-~~~~~Gd~V~v~Y~g~l~~dG~~fdss~~~~~p~~f~lG~g~~vi~G~eeaL  113 (180)
T 2f4e_A           35 NVPPKVDSEAEVLDEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGV  113 (180)
T ss_dssp             CSCCCCCSCCEEEETTEEEEEEECCBS-CCBCTTCEEEEEEEEEETTTCCEEEETTTTTCCEEEETTSCCGGGHHHHHHH
T ss_pred             cCCcccCCCcEECCCceEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCcEEeccCccCCCEEEEeCCCCchhHHHHHHH
Confidence            344456677888999999999999999 799999999999999998 6999999998889999999999 9999999999


Q ss_pred             cCcccCcEEEEEEEcCCCCCCCCCCC---CCCCCCCeEEEEEEeccceeee
Q 015659          110 ITMKKRECAVFTFTLPSELRFGVEGR---DSLPPNSVVQFEVELVSWITVV  157 (403)
Q Consensus       110 ~~m~~Ge~~~v~~~vp~~~ayg~~~~---~~ip~~~~l~~~v~l~~~~~~~  157 (403)
                      .+|++|++++|  .|||+++||..+.   +.||++++++|+|+|+++....
T Consensus       114 ~gMk~Ge~~~v--~iPp~~aYG~~g~~~~~~Ip~~s~l~F~VeL~~v~~~~  162 (180)
T 2f4e_A          114 ASMKSGERALV--HVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETK  162 (180)
T ss_dssp             TTCCBTCEEEE--EECGGGTTTTTCBSSSSCBCTTCCEEEEEEEEEESCBC
T ss_pred             hCCCCCCEEEE--EECchHhCCcCCcccCCCcCCCCeEEEEEEEEEEecCc
Confidence            99999999999  9999999999985   5899999999999999986543

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=99.89  E-value=5.4e-23  Score=170.44  Aligned_cols=112  Identities=40%  Similarity=0.728  Sum_probs=104.0

Q ss_pred             CceeecCCCeEEE--EEEccCCCCC-CCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccC
Q 015659           39 EERGLGNSGIKKK--LLKNGVDWDT-PEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKR  115 (403)
Q Consensus        39 ~~~~~~~~g~~~~--vl~~G~G~~~-~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~G  115 (403)
                      ..+..+++|++|+  ++++|+| .. ++.||.|+|||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++|
T Consensus        15 ~~~~~~~~Gl~~~K~~l~~G~G-~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~G   93 (130)
T 2lgo_A           15 QTQGPGSMSAQLEKKVLTPGDG-VTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLG   93 (130)
T ss_dssp             SSCSSSSSSCCCCEEEEECCCS-SCCCCTTSEEEEEEEEECTTSCEEECTTTTTCCEEEETTSTTSCHHHHHHHHHSCTT
T ss_pred             ccceeCCCceEEEEEEEeccCC-CccCCCCCEEEEEEEEEECCCCEEEccCcCCCCEEEEeCCCCccHHHHHHHhCCCCC
Confidence            3455679999999  9999999 55 999999999999999899999999987789999999999999999999999999


Q ss_pred             cEEEEEEEcCCCCCCCCCCCC-CCCCCCeEEEEEEeccc
Q 015659          116 ECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSW  153 (403)
Q Consensus       116 e~~~v~~~vp~~~ayg~~~~~-~ip~~~~l~~~v~l~~~  153 (403)
                      ++++|  .|||+++||+.+.+ .||++++++|+|+|+++
T Consensus        94 e~~~v--~ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i  130 (130)
T 2lgo_A           94 EKALF--TIPYQLAYGERGYPPVIPPKATLVFEVELLAV  130 (130)
T ss_dssp             EEEEE--EECTTTSTTTTCCSTTSCSSCCEEEEEEEEEC
T ss_pred             CEEEE--EECcHHHCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence            99999  99999999999876 79999999999999864

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=99.89  E-value=5.1e-23  Score=165.13  Aligned_cols=105  Identities=33%  Similarity=0.668  Sum_probs=98.7

Q ss_pred             CeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCC
Q 015659           47 GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPS  126 (403)
Q Consensus        47 g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~  126 (403)
                      |++|+++++|+|...++.||.|++||++++.||++|++|+.+++|+.|.+|.+++++||+++|.+|++|++++|  .|||
T Consensus         1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~--~ip~   78 (107)
T 2ppn_A            1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKL--TISP   78 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEE--EECG
T ss_pred             CcEEEEEECcCCCcCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCChHHHHHHHHhCCCCCCEEEE--EECH
Confidence            79999999999943499999999999999999999999987668999999999999999999999999999999  9999


Q ss_pred             CCCCCCCCCC-CCCCCCeEEEEEEeccc
Q 015659          127 ELRFGVEGRD-SLPPNSVVQFEVELVSW  153 (403)
Q Consensus       127 ~~ayg~~~~~-~ip~~~~l~~~v~l~~~  153 (403)
                      +++||+.+.+ .||++++++|+|+|+++
T Consensus        79 ~~ayG~~~~~~~Ip~~~~l~f~v~l~~v  106 (107)
T 2ppn_A           79 DYAYGATGHPGIIPPHATLVFDVELLKL  106 (107)
T ss_dssp             GGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             HHccCCCCCCCCcCCCCeEEEEEEEEEe
Confidence            9999999875 89999999999999876

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=99.89  E-value=1.6e-23  Score=178.98  Aligned_cols=87  Identities=25%  Similarity=0.378  Sum_probs=82.0

Q ss_pred             eecCCCeEEEEEEccCCCCCC--CCCCEEEEEEEEEEc--CCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcE
Q 015659           42 GLGNSGIKKKLLKNGVDWDTP--EFGDEVTIHYVGTLL--DGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKREC  117 (403)
Q Consensus        42 ~~~~~g~~~~vl~~G~G~~~~--~~gd~V~v~y~~~~~--~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~  117 (403)
                      .++++||+|+++++|+| ..|  ..||.|+|||++++.  +|++|+||+.+++|+.|.+|.+++|+||+++|.+|++|++
T Consensus         6 ~~~~~Gv~~~vl~~G~G-~~p~~~~G~~V~vhY~g~l~d~~G~~FDsS~~rg~P~~f~lG~g~vI~Gwd~gl~~M~~Ge~   84 (165)
T 2lkn_A            6 RLREDGIQKRVIQEGRG-ELPDFQDGTKATFHYRTLHSDDEGTVLDDSRARGKPMELIIGKKFKLPVWETIVCTMREGEI   84 (165)
T ss_dssp             HHHTTSCCCCEEECCSS-CCCCCCTTCEEEEECEEECSSSSCCEEEESTTTTCCEEEESSSSCSCSHHHHHHTTCCTTCE
T ss_pred             cccCCCeEEEEEECCcC-CCCCCCCCCEEEEEEEEEEeCCCccEEEecccCCCCEEEEecCCCccHHHHHHHhcCccCce
Confidence            56899999999999999 544  679999999999996  4999999999999999999999999999999999999999


Q ss_pred             EEEEEEcCCCCCCC
Q 015659          118 AVFTFTLPSELRFG  131 (403)
Q Consensus       118 ~~v~~~vp~~~ayg  131 (403)
                      ++|  +|||++|||
T Consensus        85 ~~~--~ipp~laYG   96 (165)
T 2lkn_A           85 AQF--LCDIKHVVL   96 (165)
T ss_dssp             EEE--ECCHHHHSS
T ss_pred             EEE--EECHHHhcC
Confidence            999  999999999

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=99.89  E-value=1.9e-23  Score=186.67  Aligned_cols=113  Identities=27%  Similarity=0.423  Sum_probs=105.4

Q ss_pred             CccCCCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcc
Q 015659           34 PLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMK  113 (403)
Q Consensus        34 ~~~~~~~~~~~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~  113 (403)
                      .+...+.+..+++|++|+++++|+| ..|..||.|+|||++++.||++|++|   +.|+.|.+|  ++++||+++|.+|+
T Consensus       105 ~n~~~~gv~~~~sGl~y~vl~~G~G-~~p~~gd~V~V~Y~g~l~dG~vfDss---~~P~~f~lG--~vI~G~eeaL~gMk  178 (219)
T 3oe2_A          105 GEKAKPGVKELADGILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQS---TQPQWFRLD--SVISGWTSALQNMP  178 (219)
T ss_dssp             HHHTSTTCEECGGGCEEEEEECCCS-CCCCTTSEEEEEEEEECTTSCEEEEC---SSCEEEEGG--GSCHHHHHHHTTCC
T ss_pred             HhccCCCcEECCCCeEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEeecc---CCcEEEEec--chhHHHHHHHhCCC
Confidence            3445566888999999999999999 89999999999999999999999999   589999998  89999999999999


Q ss_pred             cCcEEEEEEEcCCCCCCCCCCCC-CCCCCCeEEEEEEeccce
Q 015659          114 KRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI  154 (403)
Q Consensus       114 ~Ge~~~v~~~vp~~~ayg~~~~~-~ip~~~~l~~~v~l~~~~  154 (403)
                      +|++++|  .|||++|||..+.+ .|||+++++|+|+|+++.
T Consensus       179 ~Gek~~v--~IPp~lAYG~~g~~~~IPpnstLvFeVeLl~Ik  218 (219)
T 3oe2_A          179 TGAKWRL--VIPSDQAYGAEGAGDLIDPFTPLVFEIELIAVS  218 (219)
T ss_dssp             TTCEEEE--EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             CCCEEEE--EECchhcCCCCCCCCCCCCCCeEEEEEEEEEEe
Confidence            9999999  99999999999988 699999999999999874

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=99.88  E-value=5.6e-23  Score=177.02  Aligned_cols=116  Identities=31%  Similarity=0.530  Sum_probs=107.4

Q ss_pred             ccCCCceeecCCCeEEEEEEccCCCCC-CCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcc
Q 015659           35 LKVGEERGLGNSGIKKKLLKNGVDWDT-PEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMK  113 (403)
Q Consensus        35 ~~~~~~~~~~~~g~~~~vl~~G~G~~~-~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~  113 (403)
                      +.....+..+++|++|+++++|+| .. |..||.|+|||++++.||++|++|+.++.|+.|.+|  ++++||+++|.+|+
T Consensus        26 ~~~~~~~~~~~sGl~~~vl~~G~G-~~~~~~gd~V~v~Y~g~l~dG~~fdss~~~g~p~~f~lg--~vI~G~eeaL~gMk  102 (167)
T 1jvw_A           26 KAAQPDAVKLPSGLVFQRIARGSG-KRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPN--EVIKGWTEALQLMR  102 (167)
T ss_dssp             HHHSTTEEECTTSCEEEEEECCCC-SBCCCTTCCEEEEEEEECTTSCEEEEHHHHTSCEEECGG--GSCHHHHHHHTTCC
T ss_pred             cccCCCcEECCCCEEEEEEEcCCC-CcCCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEeC--chhHHHHHHHcCCC
Confidence            344567888999999999999999 66 999999999999999999999999887789999995  89999999999999


Q ss_pred             cCcEEEEEEEcCCCCCCCCCCCC-CCCCCCeEEEEEEecccee
Q 015659          114 KRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWIT  155 (403)
Q Consensus       114 ~Ge~~~v~~~vp~~~ayg~~~~~-~ip~~~~l~~~v~l~~~~~  155 (403)
                      +|++++|  .|||++|||..+.+ .|||+++++|+|+|+++..
T Consensus       103 ~Ge~~~~--~Ip~~laYG~~g~~~~Ipp~s~LiF~VeL~~i~~  143 (167)
T 1jvw_A          103 EGDRWRL--FIPYDLAYGVTGGGGMIPPYSPLEFDVELISIKD  143 (167)
T ss_dssp             TTCEEEE--EECGGGTTTTTCSSSSSCTTCCEEEEEEEEEEGG
T ss_pred             CCCEEEE--EECchhhCCCCCCCCCcCCCCeEEEEEEEEEEEc
Confidence            9999999  99999999999976 8999999999999999863

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=99.88  E-value=3.7e-23  Score=172.54  Aligned_cols=111  Identities=30%  Similarity=0.516  Sum_probs=96.8

Q ss_pred             eeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEc-CCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEE
Q 015659           41 RGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLL-DGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAV  119 (403)
Q Consensus        41 ~~~~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~-~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~  119 (403)
                      ..++++|++|+++++|+| ..+..||.|+|||++++. +|++|++|+.++.|+.|.+|.+++++||+++|.+|++|++++
T Consensus        21 ~v~~~~gl~~~vl~~G~g-~~~~~gd~V~v~Y~g~l~~~G~~fdss~~~~~p~~f~lG~g~~i~G~e~aL~gm~~Ge~~~   99 (134)
T 3b7x_A           21 DISGDRGVLKDVIREGAG-DLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLWGMELGLLSMRRGELAR   99 (134)
T ss_dssp             ESSSSSSEEEEEEECCEE-EECCTTCEEEEEEEEECTTCSSCSEEC-------CEEC-CCCCCHHHHHHHHTCEETCEEE
T ss_pred             eeeCCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCeEEEecCCCCCCEEEEcCCcchhHHHHHHHhCCCCCCEEE
Confidence            345799999999999999 788999999999999998 699999998777899999999999999999999999999999


Q ss_pred             EEEEcCCCCCCCCCCCC-CCCCCCeEEEEEEeccce
Q 015659          120 FTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI  154 (403)
Q Consensus       120 v~~~vp~~~ayg~~~~~-~ip~~~~l~~~v~l~~~~  154 (403)
                      |  .|||++|||..+.+ .||++++++|+|+|+++.
T Consensus       100 v--~ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i~  133 (134)
T 3b7x_A          100 F--LFKPNYAYGTLGCPPLIPPNTTVLFEIELLDFL  133 (134)
T ss_dssp             E--EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             E--EECHHHCcCCCCCCCCcCcCCeEEEEEEEEEEe
Confidence            9  99999999999876 799999999999999874

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=99.88  E-value=1.9e-22  Score=171.78  Aligned_cols=107  Identities=31%  Similarity=0.483  Sum_probs=100.0

Q ss_pred             ecCCCe-EEEEEEccCCCC--CCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEE
Q 015659           43 LGNSGI-KKKLLKNGVDWD--TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAV  119 (403)
Q Consensus        43 ~~~~g~-~~~vl~~G~G~~--~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~  119 (403)
                      ++++|+ +|+++++|+| .  .|..||.|+|||++++.||++|+++    .|+.|.+|.+++++||+++|.+|++|++++
T Consensus        39 ~~~sG~v~~~vl~~G~G-~~~~p~~gd~V~v~Y~g~l~dG~~fds~----~p~~f~lG~g~vi~G~eeaL~gMk~Ge~~~  113 (157)
T 2jwx_A           39 ILGNGLLRKKTLVPGPP-GSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGDCDVIQALDLSVPLMDVGETAM  113 (157)
T ss_dssp             SSSSSSEEEEEEECCST-TSCCCCTTEEEEEEEEEECTTSCEEEEE----EEEEEETTTTSSCHHHHHHTTTSCTTCEEE
T ss_pred             ECCCCCEEEEEEEccCC-CccCCCCCCEEEEEEEEEECCCCEeecC----CCEEEEeCCCChhHHHHHHHcCCCCCCEEE
Confidence            788886 8999999999 5  8999999999999999999999984    799999999999999999999999999999


Q ss_pred             EEEEcCCCCCCCCCC-CC-CCCCCCeEEEEEEeccceee
Q 015659          120 FTFTLPSELRFGVEG-RD-SLPPNSVVQFEVELVSWITV  156 (403)
Q Consensus       120 v~~~vp~~~ayg~~~-~~-~ip~~~~l~~~v~l~~~~~~  156 (403)
                      |  .|||+++||..+ .+ .||++++++|+|+|+++...
T Consensus       114 v--~IP~~~aYG~~g~~~~~IPp~stLiF~VeL~~i~~~  150 (157)
T 2jwx_A          114 V--TADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDL  150 (157)
T ss_dssp             E--EECGGGTTTTTCCSSSCCCTTCCEEEEEEEEEEEEC
T ss_pred             E--EECchhcCCcccccCCCcCCCCeEEEEEEEEEEEcc
Confidence            9  999999999999 55 89999999999999998643

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.88  E-value=1.7e-22  Score=180.70  Aligned_cols=113  Identities=40%  Similarity=0.688  Sum_probs=106.4

Q ss_pred             CCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcE
Q 015659           38 GEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKREC  117 (403)
Q Consensus        38 ~~~~~~~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~  117 (403)
                      +..+..+++|++|+++++|+| ..|..||.|++||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++|++
T Consensus        96 g~t~~~~~sGl~~~vl~~G~G-~~~~~gd~V~v~Y~g~l~dG~~fdss~~~~~P~~f~lG~g~vi~G~eeaL~gM~~Ge~  174 (209)
T 3uf8_A           96 GSTVVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGV  174 (209)
T ss_dssp             CCCCEECTTSCEEEEEECCCS-CBCCTTCEEEEEEEEEETTSCEEEESGGGTCCEEEETTSSSSCHHHHHHHTTCBTTCE
T ss_pred             cccccCCCCceEEEEEEcCCC-CcCCCCCEEEEEEEEEECCCCEEEEccccCCCEEEEeCCCccchhHHHHHhCCCCCCE
Confidence            334667899999999999999 7899999999999999999999999998889999999999999999999999999999


Q ss_pred             EEEEEEcCCCCCCCCCCCC-CCCCCCeEEEEEEeccc
Q 015659          118 AVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSW  153 (403)
Q Consensus       118 ~~v~~~vp~~~ayg~~~~~-~ip~~~~l~~~v~l~~~  153 (403)
                      ++|  .|||++|||+.+.+ .|||+++++|+|+|+++
T Consensus       175 ~~v--~Ipp~~aYG~~g~~~~IP~~s~LvF~VeL~~I  209 (209)
T 3uf8_A          175 RRL--TIPPQLGYGARGAAGVIPPNATLVFEVELLDV  209 (209)
T ss_dssp             EEE--EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred             EEE--EECcHHhCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence            999  99999999999987 69999999999999864

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=99.88  E-value=3.3e-22  Score=174.80  Aligned_cols=128  Identities=29%  Similarity=0.492  Sum_probs=99.7

Q ss_pred             CcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeec-cceEEeecCCCCCCCeEEE
Q 015659          162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE-DGTVFEKKGYDGEQPLEFI  240 (403)
Q Consensus       162 d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~-~g~~fd~s~~~~~~p~~~~  240 (403)
                      +.++.++++++|.|. .|..++.|++|                           |+|++. +|++||++ +..+.|+.|.
T Consensus        48 ~~gl~~~vl~~G~G~-~~~~Gd~V~v~---------------------------Y~g~l~~dG~~fdss-~~~~~p~~f~   98 (180)
T 2f4e_A           48 DEKVSKQIIKEGHGS-KPSKYSTCFLH---------------------------YRAWTKNSQHKFEDT-WHEQQPIELV   98 (180)
T ss_dssp             ETTEEEEEEECCBSC-CBCTTCEEEEE---------------------------EEEEETTTCCEEEET-TTTTCCEEEE
T ss_pred             CCceEEEEEeCCCCC-CCCCCCEEEEE---------------------------EEEEECCCCcEEecc-CccCCCEEEE
Confidence            347889999999987 78888888876                           455554 58999999 7778999999


Q ss_pred             cCCC-CcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeccCcC---ccccCchHHHH
Q 015659          241 TDEE-QVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKV---PWEMNNQGKIE  316 (403)
Q Consensus       241 lG~~-~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~~~~~---~~~m~~~e~~~  316 (403)
                      +|.+ .+++||+.+|.+|++|+++.|+|||++|||..+... ++.|||+++|+|+|+|++|.+.++   .|+|+.+||++
T Consensus        99 lG~g~~vi~G~eeaL~gMk~Ge~~~v~iPp~~aYG~~g~~~-~~~Ip~~s~l~F~VeL~~v~~~~e~~~~~~mt~eErl~  177 (180)
T 2f4e_A           99 LGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFS-FPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIG  177 (180)
T ss_dssp             TTSCCGGGHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBSS-SSCBCTTCCEEEEEEEEEESCBCCC-------------
T ss_pred             eCCCCchhHHHHHHHhCCCCCCEEEEEECchHhCCcCCccc-CCCcCCCCeEEEEEEEEEEecCccccccccCCHHHHHh
Confidence            9999 999999999999999999999999999999987522 357999999999999999999887   89999999998


Q ss_pred             HHH
Q 015659          317 AAG  319 (403)
Q Consensus       317 ~~~  319 (403)
                      +|.
T Consensus       178 ~A~  180 (180)
T 2f4e_A          178 AAD  180 (180)
T ss_dssp             ---
T ss_pred             hcC
Confidence            773

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=99.88  E-value=4.3e-22  Score=168.08  Aligned_cols=116  Identities=34%  Similarity=0.559  Sum_probs=105.0

Q ss_pred             eeccC--CCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCC
Q 015659          156 VVDLS--KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDG  233 (403)
Q Consensus       156 ~~dv~--~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~  233 (403)
                      ..|++  .|+++.++++++|.|...|..++.|++|                           |++++.||++||++ +.+
T Consensus        26 ~~di~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~---------------------------Y~g~~~dG~~fdss-~~~   77 (144)
T 3o5e_A           26 GEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVH---------------------------YKGKLSNGKKFDSS-HDR   77 (144)
T ss_dssp             CEECCSSCSSSEEEEEEECCBSSCCCCTTCEEEEE---------------------------EEEECTTSCEEEES-GGG
T ss_pred             cccccccCCCeEEEEEEECCCCCccCCCCCEEEEE---------------------------EEEEECCCCEEEee-ccc
Confidence            45666  7899999999999998889999999876                           55666688999998 778


Q ss_pred             CCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeecc
Q 015659          234 EQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK  302 (403)
Q Consensus       234 ~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~~  302 (403)
                      ++|+.|.+|.+++++||+.+|.+|++||++.|+|||.+|||+.+.   ++.|||+++|+|+|+|++|+.
T Consensus        78 ~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ipp~~aYG~~g~---~~~Ipp~~~L~f~VeL~~ikg  143 (144)
T 3o5e_A           78 NEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKG  143 (144)
T ss_dssp             TSCEEEETTSSSSCHHHHHHHTTCCBTCEEEEEECGGGTTTTTCB---TTTBCTTCCEEEEEEEEEEEC
T ss_pred             CCCeEEEeCCCcccHHHHHHHhCCCCCCEEEEEEChHHCcCCCCC---CCCcCCCCeEEEEEEEEEecC
Confidence            899999999999999999999999999999999999999999987   578999999999999999863

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=99.88  E-value=2.4e-22  Score=166.63  Aligned_cols=117  Identities=40%  Similarity=0.595  Sum_probs=102.7

Q ss_pred             CCCceeecCCCeE-EEEEEcc-CC-CCCCCCCCEEEEEEEEEE-cCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCc
Q 015659           37 VGEERGLGNSGIK-KKLLKNG-VD-WDTPEFGDEVTIHYVGTL-LDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITM  112 (403)
Q Consensus        37 ~~~~~~~~~~g~~-~~vl~~G-~G-~~~~~~gd~V~v~y~~~~-~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m  112 (403)
                      ..+.+.++++|+. |+++++| .| ...+..||.|+|||++++ .+|++|++|+.++.|+.|.+|.+++++||+++|.+|
T Consensus         6 ~~~~~~~~~~g~~~~~il~~G~~g~g~~~~~gd~V~v~Y~g~~~~dG~~fd~s~~~~~p~~f~lG~g~~i~g~e~~l~gm   85 (129)
T 2vn1_A            6 EFEKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSM   85 (129)
T ss_dssp             -CEEEECSTTSSEEEEEEECCCCSGGGSCCTTCEEEEEEEEEETTTCCEEEEGGGTTCCEEEETTSSSSCHHHHHHHTTC
T ss_pred             ccCCcEECCCCCEEEEEEeCCCCCCCCcCCCCCEEEEEEEEEECCCCeEEEecCCCCccEEEEeCCCCcCHHHHHHHhCC
Confidence            3345666666655 4689966 33 288999999999999999 699999999887799999999999999999999999


Q ss_pred             ccCcEEEEEEEcCCCCCCCCCCCC-CCCCCCeEEEEEEecccee
Q 015659          113 KKRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWIT  155 (403)
Q Consensus       113 ~~Ge~~~v~~~vp~~~ayg~~~~~-~ip~~~~l~~~v~l~~~~~  155 (403)
                      ++|++++|  .|||++|||..+.+ .||++++++|+|+|+++..
T Consensus        86 ~~Ge~~~v--~ip~~~aYG~~~~~~~Ip~~~~l~f~vel~~v~~  127 (129)
T 2vn1_A           86 RKNEKCLV--RIESMYGYGDEGCGESIPGNSVLLFEIELLSFRE  127 (129)
T ss_dssp             CTTCEEEE--EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred             CCCCEEEE--EEChHHcCCCCCCCCCcCCCCeEEEEEEEEEEec
Confidence            99999999  99999999999876 7999999999999998853

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=99.88  E-value=2.5e-22  Score=179.48  Aligned_cols=116  Identities=30%  Similarity=0.441  Sum_probs=107.8

Q ss_pred             CccCCCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcc
Q 015659           34 PLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMK  113 (403)
Q Consensus        34 ~~~~~~~~~~~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~  113 (403)
                      .+...+.+..+++|++|+++++|+| ..|..||.|+|||++++.||++|++|+.++.|+.|.+|  ++++||+++|.+|+
T Consensus        94 ~~~~~~~v~~~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~lg--~vI~G~eeaL~gMk  170 (213)
T 1fd9_A           94 ENKNKPGVVVLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVS--QVIPGWTEALQLMP  170 (213)
T ss_dssp             HHHHSTTEEECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEGG--GSCHHHHHHHTTCC
T ss_pred             HhcccCCcEECCCccEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEcC--chhhHHHHHHcCCC
Confidence            3345567888999999999999999 89999999999999999999999999987789999995  89999999999999


Q ss_pred             cCcEEEEEEEcCCCCCCCCCCCC-CCCCCCeEEEEEEeccce
Q 015659          114 KRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI  154 (403)
Q Consensus       114 ~Ge~~~v~~~vp~~~ayg~~~~~-~ip~~~~l~~~v~l~~~~  154 (403)
                      +|++++|  .|||+++||..+.+ .|||+++++|+|+|+++.
T Consensus       171 ~Gek~~v--~IP~~laYG~~g~~~~Ipp~stLiF~VeLl~v~  210 (213)
T 1fd9_A          171 AGSTWEI--YVPSGLAYGPRSVGGPIGPNETLIFKIHLISVK  210 (213)
T ss_dssp             TTCEEEE--EECGGGTTTTCCCSSSCCTTCCEEEEEEEEEEE
T ss_pred             CCCEEEE--EECchhccCccCCCCCCCCCCeEEEEEEEEEEE
Confidence            9999999  99999999999975 899999999999999875

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=99.88  E-value=8.1e-23  Score=169.43  Aligned_cols=112  Identities=34%  Similarity=0.551  Sum_probs=104.5

Q ss_pred             CceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcC------c
Q 015659           39 EERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIIT------M  112 (403)
Q Consensus        39 ~~~~~~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~------m  112 (403)
                      .++..+++|++|+++++|+| ..++.||.|+|||++++.+|++|++|+.+++|+.|.+|.+++++||+++|.+      |
T Consensus         5 ~~~~~~~~Gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~~i~G~~~~L~G~~~~~~m   83 (129)
T 1u79_A            5 CEFSVSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPM   83 (129)
T ss_dssp             CCCEECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCC
T ss_pred             CccEECCCCeEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCCccHHHHHHhccccccccc
Confidence            45677899999999999999 8899999999999999989999999987668999999999999999999998      9


Q ss_pred             ccCcEEEEEEEcCCCCCCCCCCC------CCCCCCCeEEEEEEeccc
Q 015659          113 KKRECAVFTFTLPSELRFGVEGR------DSLPPNSVVQFEVELVSW  153 (403)
Q Consensus       113 ~~Ge~~~v~~~vp~~~ayg~~~~------~~ip~~~~l~~~v~l~~~  153 (403)
                      ++|++++|  .|||+++||+.+.      +.||++++++|+|+|+++
T Consensus        84 ~~Ge~~~v--~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           84 LTGGKRTL--RIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             BTTCEEEE--EECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             CCCCEEEE--EEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence            99999999  9999999999985      279999999999999875

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=99.87  E-value=5.4e-22  Score=178.51  Aligned_cols=117  Identities=31%  Similarity=0.592  Sum_probs=108.0

Q ss_pred             CCCccCCCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcC
Q 015659           32 AAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIIT  111 (403)
Q Consensus        32 ~~~~~~~~~~~~~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~  111 (403)
                      ...+....++.++++|++|+++++|+| ..|..||.|+|||++++.||++|++|+.++.|+.|.+|  ++++||+++|.+
T Consensus       107 l~~~~~~~~v~~~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~lg--~vI~G~eeaL~g  183 (224)
T 1q6h_A          107 REKFAKEKGVKTSSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKN  183 (224)
T ss_dssp             HHHHHHSTTEEECTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEGG--GSCHHHHHHGGG
T ss_pred             HHHhCcCCCeEECCCceEEEEEecccC-ccccCCCEEEEEEEEEeCCCCEEeeccccCCCEEEEcC--CcchhHHHHHcC
Confidence            333445567888899999999999999 89999999999999999999999999988899999995  899999999999


Q ss_pred             cccCcEEEEEEEcCCCCCCCCCCCCCCCCCCeEEEEEEeccc
Q 015659          112 MKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSW  153 (403)
Q Consensus       112 m~~Ge~~~v~~~vp~~~ayg~~~~~~ip~~~~l~~~v~l~~~  153 (403)
                      |++|++++|  .|||+++||..+.+.|||+++++|+|+|+++
T Consensus       184 Mk~Gek~~v--~IP~~laYG~~g~~~IPp~stLiF~VeL~~i  223 (224)
T 1q6h_A          184 IKKGGKIKL--VIPPELAYGKAGVPGIPPNSTLVFDVELLDV  223 (224)
T ss_dssp             SCTTCEEEE--EECGGGTTTTTCBTTBCTTCCEEEEEEEEEE
T ss_pred             CCCCCEEEE--EECchhhcCcCCCCCCCCCCEEEEEEEEEEe
Confidence            999999999  9999999999998789999999999999876

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.87  E-value=1.2e-22  Score=203.97  Aligned_cols=116  Identities=34%  Similarity=0.558  Sum_probs=81.4

Q ss_pred             eeccC--CCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCC
Q 015659          156 VVDLS--KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDG  233 (403)
Q Consensus       156 ~~dv~--~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~  233 (403)
                      +.|++  .++++.++++++|.|+..|..++.|++|                           |+|++.||++||+| +.+
T Consensus        22 ~~~~~~~~~~g~~~~~~~~G~g~~~~~~gd~v~v~---------------------------y~~~~~~g~~~dss-~~~   73 (457)
T 1kt0_A           22 GEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVH---------------------------YKGKLSNGKKFDSS-HDR   73 (457)
T ss_dssp             -----------CEEEC--------CCCBTCEEEEE---------------------------EEEEC-----CBC-----
T ss_pred             cccccCCCCCcEEEEEEECCCCCCCCCCCCEEEEE---------------------------EEEEECCCCEEecc-CCC
Confidence            34566  7889999999999999778899999876                           55566678899998 777


Q ss_pred             CCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeecc
Q 015659          234 EQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK  302 (403)
Q Consensus       234 ~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~~  302 (403)
                      +.|+.|.+|.+.++|||+.+|.+|++||++.|+|||.++||+.+.   ++.||++++|+|+|+|++|..
T Consensus        74 ~~p~~~~~g~~~~i~g~~~~l~~m~~Ge~~~~~i~~~~~yg~~g~---~~~i~~~~~l~~~v~l~~~~~  139 (457)
T 1kt0_A           74 NEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKG  139 (457)
T ss_dssp             --CEEEETTSTTSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCB---TTTBCTTCCEEEEEEEEEEEC
T ss_pred             CCCeEEEeCCcchhhHHHHHHhhCCCCCEEEEEEChHHhccccCC---CCCCCCCCcEEEEEeeceeec
Confidence            899999999999999999999999999999999999999999887   678999999999999999875

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=99.87  E-value=1.2e-21  Score=162.18  Aligned_cols=115  Identities=35%  Similarity=0.573  Sum_probs=103.4

Q ss_pred             eccC--CCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCC
Q 015659          157 VDLS--KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGE  234 (403)
Q Consensus       157 ~dv~--~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~  234 (403)
                      .|++  .|.++.++++++|.|...|..++.|++|                           |++++.||++||++ +.++
T Consensus        11 ~di~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~---------------------------Y~g~~~dG~~fdss-~~~~   62 (128)
T 3o5q_A           11 EDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVH---------------------------YKGKLSNGKKFDSS-HDRN   62 (128)
T ss_dssp             EECCSSCSSSEEEEEEECCSSSCCCCTTCEEEEE---------------------------EEEEETTSCEEEEH-HHHT
T ss_pred             ceecccCCCCEEEEEEECCCCCccCCCCCEEEEE---------------------------EEEEECCCCEEEec-CCCC
Confidence            4554  7889999999999998789999999876                           55666688899998 6778


Q ss_pred             CCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeecc
Q 015659          235 QPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK  302 (403)
Q Consensus       235 ~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~~  302 (403)
                      +|+.|.+|.+++++||+.+|.+|++||+++|.|||++|||+.+.   ++.|||+++|+|+|+|++|+.
T Consensus        63 ~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ip~~~aYG~~g~---~~~Ip~~~~l~f~vel~~i~~  127 (128)
T 3o5q_A           63 EPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKG  127 (128)
T ss_dssp             SCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCB---TTTBCTTCCEEEEEEEEEEEC
T ss_pred             CCEEEEECCCCccHHHHHHHhcCCCCCEEEEEEChHHcCCCCCC---CCCcCCCCEEEEEEEEEEecC
Confidence            99999999999999999999999999999999999999999987   578999999999999999874

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=99.87  E-value=9.6e-22  Score=160.42  Aligned_cols=109  Identities=30%  Similarity=0.438  Sum_probs=99.7

Q ss_pred             ceeecCCC-eEEEEEEccCCC-CCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcE
Q 015659           40 ERGLGNSG-IKKKLLKNGVDW-DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKREC  117 (403)
Q Consensus        40 ~~~~~~~g-~~~~vl~~G~G~-~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~  117 (403)
                      -+.++++| ++|+++++|+|. ..|+.||.|++||++++.+|++|+++    .|+.|.+|.+++++||+++|.+|++|++
T Consensus         6 ~~~~~~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y~g~~~dG~~~ds~----~p~~f~lG~~~~i~g~e~~l~gm~~Ge~   81 (118)
T 2awg_A            6 WLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGDCDVIQALDLSVPLMDVGET   81 (118)
T ss_dssp             EEESSSSSSEEEEEEECCCTTCCCCCTTSEEEEEEEEECTTSCEEEEE----EEEEEETTSSCSCHHHHHHGGGSCTTCE
T ss_pred             ceEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEECC----CCEEEEECCCChhHHHHHHHhCCCCCCE
Confidence            34566777 999999999993 27999999999999999899999984    7999999999999999999999999999


Q ss_pred             EEEEEEcCCCCCCCCCCCC-CCCCCCeEEEEEEeccce
Q 015659          118 AVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI  154 (403)
Q Consensus       118 ~~v~~~vp~~~ayg~~~~~-~ip~~~~l~~~v~l~~~~  154 (403)
                      ++|  .|||++|||..+.+ .||++++++|+|+|+++.
T Consensus        82 ~~~--~ip~~~ayG~~~~~~~Ip~~~~l~f~v~l~~v~  117 (118)
T 2awg_A           82 AMV--TADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV  117 (118)
T ss_dssp             EEE--EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             EEE--EEChHHccCCCCCCCccCCCCeEEEEEEEEEec
Confidence            999  99999999999876 899999999999999874

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=9.1e-22  Score=164.28  Aligned_cols=116  Identities=30%  Similarity=0.413  Sum_probs=103.6

Q ss_pred             CCCceeecCCC-eEEEEEEccCCC-CCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCccc
Q 015659           37 VGEERGLGNSG-IKKKLLKNGVDW-DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKK  114 (403)
Q Consensus        37 ~~~~~~~~~~g-~~~~vl~~G~G~-~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~  114 (403)
                      ..+.+.++++| ++|+++++|+|. ..++.||.|+|||++++.||++|+++    .|+.|.+|.+++++||+++|.+|++
T Consensus         7 ~~~~~~~~~~g~l~~~vl~~G~G~~~~~~~gd~V~v~Y~g~~~dG~~fds~----~p~~f~lG~g~~i~G~e~~L~gm~~   82 (135)
T 2d9f_A            7 GEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGDCDVIQALDLSVPLMDV   82 (135)
T ss_dssp             CSSCEESSSSSSSEEEEEECCCSSCCCCCTTSEEEEEEEEEESSSCEEEEE----EEEEEETTSCCSCTTTTTTGGGSCT
T ss_pred             cccCcEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEecC----CCEEEEeCCCChhHHHHHHHhCCCC
Confidence            34456666777 999999999992 38999999999999999999999973    7999999999999999999999999


Q ss_pred             CcEEEEEEEcCCCCCCCCCC-CC-CCCCCCeEEEEEEeccceeeec
Q 015659          115 RECAVFTFTLPSELRFGVEG-RD-SLPPNSVVQFEVELVSWITVVD  158 (403)
Q Consensus       115 Ge~~~v~~~vp~~~ayg~~~-~~-~ip~~~~l~~~v~l~~~~~~~d  158 (403)
                      |++++|  .|||+++||..+ .+ .||++++++|+|+|+++....+
T Consensus        83 Ge~~~v--~ip~~~aYG~~~~~~~~Ip~~~~l~f~vel~~v~~~~~  126 (135)
T 2d9f_A           83 GETAMV--TADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDRPD  126 (135)
T ss_dssp             TCEEEE--EECHHHHTCTTCCSSSCCCTTCCEEEEEEEEEEESSCS
T ss_pred             CCEEEE--EEChhHccCcCCcCCCccCCCCeEEEEEEEEEeecCCc
Confidence            999999  999999999998 55 8999999999999999875433

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=99.86  E-value=4.2e-21  Score=156.96  Aligned_cols=110  Identities=35%  Similarity=0.504  Sum_probs=96.1

Q ss_pred             CcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCC-------CC
Q 015659          162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYD-------GE  234 (403)
Q Consensus       162 d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~-------~~  234 (403)
                      ..++.++++++|.+...|..++.|++|                           |++++.||++||++ +.       .+
T Consensus         3 p~g~~~~il~~G~g~~~p~~gd~V~v~---------------------------Y~g~~~dG~~fdss-~~~~~~~~~~~   54 (119)
T 3kz7_A            3 PPKYTKSILKKGDKTNFPKKGDVVHCW---------------------------YTGTLPDGTVFDTN-IQTSSKKKKNA   54 (119)
T ss_dssp             SCSEEEEEEECCCSSCCCCTTCEEEEE---------------------------EEEECTTSCEEEEC-CCCSSSTTTTC
T ss_pred             CCccEEEEEEcCCCCCcCCCCCEEEEE---------------------------EEEEECCCCEEEec-cccccccccCC
Confidence            357899999999998789999999976                           45555678889888 44       25


Q ss_pred             CCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeec
Q 015659          235 QPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (403)
Q Consensus       235 ~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~  301 (403)
                      +|+.|.+|.+++++||+.+|.+|++||++.|+|||++|||+.+..  ...|||+++|+|+|+|++|+
T Consensus        55 ~p~~f~lG~~~~i~G~e~~l~gm~~Ge~~~v~ip~~~aYG~~g~~--~~~Ip~~~~l~f~veL~~i~  119 (119)
T 3kz7_A           55 KPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQP--DAKIPPNTKLIFEVELVDID  119 (119)
T ss_dssp             CCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCTTCBG--GGTBCTTCCEEEEEEEEEEC
T ss_pred             CCEEEEECCCChhHHHHHHHhCCCCCCEEEEEECcHHhcCCCCCC--CCccCcCCeEEEEEEEEEeC
Confidence            899999999999999999999999999999999999999998872  13799999999999999974

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=99.86  E-value=4e-21  Score=160.39  Aligned_cols=116  Identities=35%  Similarity=0.576  Sum_probs=103.8

Q ss_pred             eeccC--CCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCC
Q 015659          156 VVDLS--KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDG  233 (403)
Q Consensus       156 ~~dv~--~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~  233 (403)
                      +.|++  .+.++.++++++|.|+..|..++.|++|                           |++++.||++||++ +.+
T Consensus         5 ~~dv~~~~~~gl~~~~l~~G~g~~~~~~gd~V~v~---------------------------Y~g~~~dG~~fdss-~~~   56 (135)
T 1r9h_A            5 KIDITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVH---------------------------YVGTLENGTKFDSS-RDR   56 (135)
T ss_dssp             CEECSTTCCSSEEEEEEECCBSSCCCCTTCEEEEE---------------------------EEEEETTSCEEEEH-HHH
T ss_pred             ceecccCCCCcEEEEEEEccCCCcCCCCCCEEEEE---------------------------EEEEECCCCEEEec-CcC
Confidence            45667  7889999999999998778889988876                           55556678899998 666


Q ss_pred             CCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeecc
Q 015659          234 EQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK  302 (403)
Q Consensus       234 ~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~~  302 (403)
                      ++|++|.+|.+++++||+.+|.+|++||+++|+|||++|||+.+.   +..||++++|+|+|+|++|..
T Consensus        57 ~~p~~f~lG~~~vi~G~e~~l~gm~~Ge~~~v~ip~~~aYG~~g~---~~~Ip~~~~l~f~v~l~~i~~  122 (135)
T 1r9h_A           57 GDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGS---PPKIPGGATLIFEVELFEWSA  122 (135)
T ss_dssp             TSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEEECGGGTTTTTCB---TTTBCTTCCEEEEEEEEEEEC
T ss_pred             CCCEEEEeCCCCccHHHHHHHhcCCCCCEEEEEEChHHcCCCCCC---CCCcCcCCcEEEEEEEEEeec
Confidence            789999999999999999999999999999999999999999887   578999999999999999986

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=99.86  E-value=1.9e-21  Score=166.11  Aligned_cols=117  Identities=16%  Similarity=0.249  Sum_probs=92.8

Q ss_pred             CCcceeeEEeecCCcCCC-CCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeec--cceEEeecCCCCCCCe
Q 015659          161 KDGGIVKKILEKGERDAS-PGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE--DGTVFEKKGYDGEQPL  237 (403)
Q Consensus       161 ~d~~v~k~il~~G~g~~~-p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~--~g~~fd~s~~~~~~p~  237 (403)
                      .+.|+.++++++|.|... +..++.|++|                           |+|++.  ||++|||| +++++|+
T Consensus         8 ~~~Gv~~~vl~~G~G~~p~~~~G~~V~vh---------------------------Y~g~l~d~~G~~FDsS-~~rg~P~   59 (165)
T 2lkn_A            8 REDGIQKRVIQEGRGELPDFQDGTKATFH---------------------------YRTLHSDDEGTVLDDS-RARGKPM   59 (165)
T ss_dssp             HTTSCCCCEEECCSSCCCCCCTTCEEEEE---------------------------CEEECSSSSCCEEEES-TTTTCCE
T ss_pred             cCCCeEEEEEECCcCCCCCCCCCCEEEEE---------------------------EEEEEeCCCccEEEec-ccCCCCE
Confidence            466899999999999743 2467888876                           555553  59999999 8999999


Q ss_pred             EEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCccc----c-cCCCC----------------------------
Q 015659          238 EFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA----K-RDLAT----------------------------  284 (403)
Q Consensus       238 ~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~----~-~~~~~----------------------------  284 (403)
                      +|.+|.+++|+||+.+|.+|++||+++|+|||++|||....    + .....                            
T Consensus        60 ~f~lG~g~vI~Gwd~gl~~M~~Ge~~~~~ipp~laYG~p~v~~~~r~~~~~~~p~~~~~~~~g~~~~~~~~~~g~~d~~~  139 (165)
T 2lkn_A           60 ELIIGKKFKLPVWETIVCTMREGEIAQFLCDIKHVVLYPLVAKSLRNIAVGKDPLEGQRHCCGVAQMREHSSLGHADLDA  139 (165)
T ss_dssp             EEESSSSCSCSHHHHHHTTCCTTCEEEEECCHHHHSSHHHHHHHHTTGGGSSTTTTTCSCCSSCCSCCCCCCCCCSTTTH
T ss_pred             EEEecCCCccHHHHHHHhcCccCceEEEEECHHHhcCCcchhhhhhhccccCCCccccccceeeeecccccccccccccc
Confidence            99999999999999999999999999999999999993100    0 00112                            


Q ss_pred             -CCCCCeEEEEEEEeeeccCcC
Q 015659          285 -IPSCAKLYYEVEMMDFIKEKV  305 (403)
Q Consensus       285 -ip~~~~l~f~iel~~i~~~~~  305 (403)
                       |+++++|+|+|||++|+.+.+
T Consensus       140 li~~p~~L~FeIELl~Ve~P~e  161 (165)
T 2lkn_A          140 LQQNPQPLIFHMEMLKVESPGT  161 (165)
T ss_dssp             HHHSCCCCEEEEEEEEEECTTT
T ss_pred             ccCCCCCeEEEEEEEEEcCCcc
Confidence             233467999999999997554

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=99.85  E-value=1.4e-20  Score=155.91  Aligned_cols=116  Identities=35%  Similarity=0.696  Sum_probs=100.8

Q ss_pred             eeccCCCcceeeEEeecC-Cc-CCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEee-ccceEEeecCCC
Q 015659          156 VVDLSKDGGIVKKILEKG-ER-DASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARL-EDGTVFEKKGYD  232 (403)
Q Consensus       156 ~~dv~~d~~v~k~il~~G-~g-~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~-~~g~~fd~s~~~  232 (403)
                      ..+++.++.+.++++++| .| ...|..++.|++|                           |++++ .||++||++ +.
T Consensus         9 ~~~~~~~g~~~~~il~~G~~g~g~~~~~gd~V~v~---------------------------Y~g~~~~dG~~fd~s-~~   60 (129)
T 2vn1_A            9 KVELTADGGVIKTILKKGDEGEENIPKKGNEVTVH---------------------------YVGKLESTGKVFDSS-FD   60 (129)
T ss_dssp             EEECSTTSSEEEEEEECCCCSGGGSCCTTCEEEEE---------------------------EEEEETTTCCEEEEG-GG
T ss_pred             CcEECCCCCEEEEEEeCCCCCCCCcCCCCCEEEEE---------------------------EEEEECCCCeEEEec-CC
Confidence            455678888888999987 55 3577888888876                           55555 578899998 67


Q ss_pred             CCCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeecc
Q 015659          233 GEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK  302 (403)
Q Consensus       233 ~~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~~  302 (403)
                      +++|++|.+|.+.+++||+.+|.+|++||++.|.|||++|||+.+.   ++.|||+++|+|+|+|+++.+
T Consensus        61 ~~~p~~f~lG~g~~i~g~e~~l~gm~~Ge~~~v~ip~~~aYG~~~~---~~~Ip~~~~l~f~vel~~v~~  127 (129)
T 2vn1_A           61 RNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGC---GESIPGNSVLLFEIELLSFRE  127 (129)
T ss_dssp             TTCCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCB---TTTBCTTCCEEEEEEEEEEEC
T ss_pred             CCccEEEEeCCCCcCHHHHHHHhCCCCCCEEEEEEChHHcCCCCCC---CCCcCCCCeEEEEEEEEEEec
Confidence            7889999999999999999999999999999999999999999887   567999999999999999985

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=99.85  E-value=1.5e-20  Score=152.17  Aligned_cols=108  Identities=26%  Similarity=0.387  Sum_probs=96.2

Q ss_pred             cceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCCCeEEEcC
Q 015659          163 GGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITD  242 (403)
Q Consensus       163 ~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~p~~~~lG  242 (403)
                      .++.++++++|.|...|..++.|++|                           |++++.||++||++ +.+++|+.|.+|
T Consensus         6 ~g~~~~~~~~G~g~~~~~~gd~V~v~---------------------------y~~~~~dG~~~d~s-~~~~~p~~f~lG   57 (113)
T 1yat_A            6 GNVKIDRISPGDGATFPKTGDLVTIH---------------------------YTGTLENGQKFDSS-VDRGSPFQCNIG   57 (113)
T ss_dssp             GGCEEEEEECCCSSCCCCTTCEEEEE---------------------------EEEEETTSCEEEES-TTTTCCEEEETT
T ss_pred             CCeEEEEEECCCCcccCCCCCEEEEE---------------------------EEEEECCCCEEEec-CCCCCcEEEEeC
Confidence            46889999999998668888888876                           55555678899998 676789999999


Q ss_pred             CCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeec
Q 015659          243 EEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (403)
Q Consensus       243 ~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~  301 (403)
                      .+.+++||+.+|.+|++||++.|.|||++|||+.+.   ++.|||+++|+|+|+|++++
T Consensus        58 ~~~~i~g~e~~l~gm~~Ge~~~v~ip~~~ayG~~~~---~~~Ip~~~~l~f~vel~~ik  113 (113)
T 1yat_A           58 VGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGF---PGLIPPNSTLVFDVELLKVN  113 (113)
T ss_dssp             SSSSCHHHHHHGGGCCTTCEEEEEECGGGTTTTTCB---TTTBCTTCCEEEEEEEEEEC
T ss_pred             CCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCC---CCCcCCCCeEEEEEEEEEeC
Confidence            999999999999999999999999999999999887   56799999999999999874

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=99.85  E-value=8.2e-21  Score=152.21  Aligned_cols=107  Identities=27%  Similarity=0.515  Sum_probs=94.8

Q ss_pred             ceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCCCeEEEcCC
Q 015659          164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDE  243 (403)
Q Consensus       164 ~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~  243 (403)
                      ++.++++++|.|...|..++.|++|                           |++++.||++||++ +..++|++|.+|.
T Consensus         1 Gl~~~~~~~G~g~~~~~~gd~V~v~---------------------------y~~~~~dG~~~d~s-~~~~~p~~f~lG~   52 (107)
T 2ppn_A            1 GVQVETISPGDGRTFPKRGQTCVVH---------------------------YTGMLEDGKKFDSS-RDRNKPFKFMLGK   52 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEE---------------------------EEEEETTSCEEEEH-HHHTSCEEEETTS
T ss_pred             CcEEEEEECcCCCcCCCCCCEEEEE---------------------------EEEEECCCCEEEec-CCCCCCEEEEeCC
Confidence            4678899999998668889988876                           55555678899998 6667899999999


Q ss_pred             CCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeec
Q 015659          244 EQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (403)
Q Consensus       244 ~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~  301 (403)
                      +++++||+.+|.+|++||+++|.+||++|||+.+.   ++.|||+++|+|+|+|++++
T Consensus        53 ~~~i~g~~~~l~gm~~Ge~~~~~ip~~~ayG~~~~---~~~Ip~~~~l~f~v~l~~v~  107 (107)
T 2ppn_A           53 QEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGH---PGIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             CCSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCB---TTTBCTTCCEEEEEEEEEEC
T ss_pred             CChHHHHHHHHhCCCCCCEEEEEECHHHccCCCCC---CCCcCCCCeEEEEEEEEEeC
Confidence            99999999999999999999999999999999887   56799999999999999874

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=99.85  E-value=1.2e-20  Score=162.43  Aligned_cols=125  Identities=22%  Similarity=0.343  Sum_probs=106.3

Q ss_pred             CCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCCCeEEE
Q 015659          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (403)
Q Consensus       161 ~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~p~~~~  240 (403)
                      .+.++.++++++|.|...|..++.|++|                           |+|++.||++||++ +.++.|+.|.
T Consensus        35 ~~sGl~~~vl~~G~G~~~~~~gd~V~v~---------------------------Y~g~l~dG~~fdss-~~~g~p~~f~   86 (167)
T 1jvw_A           35 LPSGLVFQRIARGSGKRAPAIDDKCEVH---------------------------YTGRLRDGTVFDSS-RERGKPTTFR   86 (167)
T ss_dssp             CTTSCEEEEEECCCCSBCCCTTCCEEEE---------------------------EEEECTTSCEEEEH-HHHTSCEEEC
T ss_pred             CCCCEEEEEEEcCCCCcCCCCCCEEEEE---------------------------EEEEECCCCEEeec-cccCCCEEEE
Confidence            4567899999999987558888888876                           56666788999998 6677899999


Q ss_pred             cCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeccCcCccccCchHHHHHHHH
Q 015659          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGR  320 (403)
Q Consensus       241 lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~~~~~~~~m~~~e~~~~~~~  320 (403)
                      +|  ++||||+.+|.+|++|++++|+|||++|||+.+.   ++.|||+++|+|+|+|++|.+  ..|.++.+|.-+...+
T Consensus        87 lg--~vI~G~eeaL~gMk~Ge~~~~~Ip~~laYG~~g~---~~~Ipp~s~LiF~VeL~~i~~--~~~~~~~~e~~~~l~k  159 (167)
T 1jvw_A           87 PN--EVIKGWTEALQLMREGDRWRLFIPYDLAYGVTGG---GGMIPPYSPLEFDVELISIKD--GGKGRTAEEVDEILRK  159 (167)
T ss_dssp             GG--GSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCS---SSSSCTTCCEEEEEEEEEEGG--GCCSCBHHHHHHHHHH
T ss_pred             eC--chhHHHHHHHcCCCCCCEEEEEECchhhCCCCCC---CCCcCCCCeEEEEEEEEEEEc--CCCCCCHHHHHHHHHH
Confidence            95  8999999999999999999999999999999887   568999999999999999996  3466777775554443

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=99.84  E-value=5.7e-21  Score=159.23  Aligned_cols=115  Identities=26%  Similarity=0.479  Sum_probs=93.5

Q ss_pred             eeeccCCCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeec-cceEEeecCCCC
Q 015659          155 TVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE-DGTVFEKKGYDG  233 (403)
Q Consensus       155 ~~~dv~~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~-~g~~fd~s~~~~  233 (403)
                      .+.+++.+.++.++++++|.|. .+..++.|++|                           |++++. +|++||++ +.+
T Consensus        18 ~~~~v~~~~gl~~~vl~~G~g~-~~~~gd~V~v~---------------------------Y~g~l~~~G~~fdss-~~~   68 (134)
T 3b7x_A           18 RMLDISGDRGVLKDVIREGAGD-LVAPDASVLVK---------------------------YSGYLEHMDRPFDSN-YFR   68 (134)
T ss_dssp             TCEESSSSSSEEEEEEECCEEE-ECCTTCEEEEE---------------------------EEEECTTCSSCSEEC----
T ss_pred             ccceeeCCCCEEEEEEEcCCCC-CCCCCCEEEEE---------------------------EEEEECCCCeEEEec-CCC
Confidence            3567888999999999999987 45567788766                           555555 58889988 666


Q ss_pred             CCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeec
Q 015659          234 EQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (403)
Q Consensus       234 ~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~  301 (403)
                      ++|+.|.+|.+.+++||+.+|.+|++||++.|+|||++|||+.+.   ++.|||+++|+|+|+|++|.
T Consensus        69 ~~p~~f~lG~g~~i~G~e~aL~gm~~Ge~~~v~ip~~~aYG~~~~---~~~Ip~~~~l~f~VeL~~i~  133 (134)
T 3b7x_A           69 KTPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGC---PPLIPPNTTVLFEIELLDFL  133 (134)
T ss_dssp             ----CEEC-CCCCCHHHHHHHHTCEETCEEEEEECGGGTTTTTCB---TTTBCTTCCEEEEEEEEEEC
T ss_pred             CCCEEEEcCCcchhHHHHHHHhCCCCCCEEEEEECHHHCcCCCCC---CCCcCcCCeEEEEEEEEEEe
Confidence            789999999999999999999999999999999999999999887   56799999999999999986

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=99.83  E-value=5.5e-20  Score=149.95  Aligned_cols=112  Identities=29%  Similarity=0.351  Sum_probs=98.9

Q ss_pred             eeeccCCCcceeeEEeecCCcC-CCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCC
Q 015659          155 TVVDLSKDGGIVKKILEKGERD-ASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDG  233 (403)
Q Consensus       155 ~~~dv~~d~~v~k~il~~G~g~-~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~  233 (403)
                      .+.++++++++.++++++|.|. ..|..++.|++||                           ++++.||++|+++    
T Consensus         5 ~~~~~~~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y---------------------------~g~~~dG~~~ds~----   53 (118)
T 2awg_A            5 EWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHL---------------------------QTSLENGTRVQEE----   53 (118)
T ss_dssp             CEEESSSSSSEEEEEEECCCTTCCCCCTTSEEEEEE---------------------------EEECTTSCEEEEE----
T ss_pred             cceEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEE---------------------------EEEECCCCEEECC----
Confidence            4677888988999999999985 4788888888765                           4555577888875    


Q ss_pred             CCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeec
Q 015659          234 EQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (403)
Q Consensus       234 ~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~  301 (403)
                       +|+.|.+|.+++++||+.+|.+|++||+++|.|||++|||+.+.   ++.|||+++|+|+|+|++++
T Consensus        54 -~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~~~ip~~~ayG~~~~---~~~Ip~~~~l~f~v~l~~v~  117 (118)
T 2awg_A           54 -PELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGR---SPYIPPHAALCLEVTLKTAV  117 (118)
T ss_dssp             -EEEEEETTSSCSCHHHHHHGGGSCTTCEEEEEECGGGTTTTTCB---TTTBCTTCCEEEEEEEEEEE
T ss_pred             -CCEEEEECCCChhHHHHHHHhCCCCCCEEEEEEChHHccCCCCC---CCccCCCCeEEEEEEEEEec
Confidence             79999999999999999999999999999999999999999887   56899999999999999986

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=99.83  E-value=6.7e-20  Score=151.77  Aligned_cols=107  Identities=30%  Similarity=0.434  Sum_probs=93.4

Q ss_pred             cceee--EEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCCCeEEE
Q 015659          163 GGIVK--KILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (403)
Q Consensus       163 ~~v~k--~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~p~~~~  240 (403)
                      .++..  +++++|.|...|..++.|+++                           |++++.||++||++ +..++|+.|.
T Consensus        22 ~Gl~~~K~~l~~G~G~~~~~~gd~V~v~---------------------------Y~g~~~dG~~fdss-~~~~~p~~f~   73 (130)
T 2lgo_A           22 MSAQLEKKVLTPGDGVTKPQAGKKVTVH---------------------------YDGRFPDGKQFDSS-RSRGKPFQFT   73 (130)
T ss_dssp             SSCCCCEEEEECCCSSCCCCTTSEEEEE---------------------------EEEECTTSCEEECT-TTTTCCEEEE
T ss_pred             CceEEEEEEEeccCCCccCCCCCEEEEE---------------------------EEEEECCCCEEEcc-CcCCCCEEEE
Confidence            34444  499999998668889998876                           45555678899998 6777899999


Q ss_pred             cCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeee
Q 015659          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF  300 (403)
Q Consensus       241 lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i  300 (403)
                      +|.+++++||+.+|.+|++||++.|.|||.+|||+.+.   ++.|||+++|+|+|+|++|
T Consensus        74 lG~g~vi~G~e~aL~gm~~Ge~~~v~ip~~~aYG~~~~---~~~Ip~~~~l~f~VeL~~i  130 (130)
T 2lgo_A           74 LGAGEVIKGWDQGVATMTLGEKALFTIPYQLAYGERGY---PPVIPPKATLVFEVELLAV  130 (130)
T ss_dssp             TTSTTSCHHHHHHHHHSCTTEEEEEEECTTTSTTTTCC---STTSCSSCCEEEEEEEEEC
T ss_pred             eCCCCccHHHHHHHhCCCCCCEEEEEECcHHHCCCCCC---CCCcCCCCeEEEEEEEEEC
Confidence            99999999999999999999999999999999999886   5679999999999999975

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=99.83  E-value=6.2e-20  Score=156.26  Aligned_cols=114  Identities=28%  Similarity=0.342  Sum_probs=99.4

Q ss_pred             eeccCCCcceeeEEeecCCcC-CCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCC
Q 015659          156 VVDLSKDGGIVKKILEKGERD-ASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGE  234 (403)
Q Consensus       156 ~~dv~~d~~v~k~il~~G~g~-~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~  234 (403)
                      +.+++.++.+.++++++|.|. ..|..++.|+++                           |+|++.||++||++     
T Consensus        36 ~~~~~~sG~v~~~vl~~G~G~~~~p~~gd~V~v~---------------------------Y~g~l~dG~~fds~-----   83 (157)
T 2jwx_A           36 WLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVH---------------------------LQTSLENGTRVQEE-----   83 (157)
T ss_dssp             CEESSSSSSEEEEEEECCSTTSCCCCTTEEEEEE---------------------------EEEECTTSCEEEEE-----
T ss_pred             cceECCCCCEEEEEEEccCCCccCCCCCCEEEEE---------------------------EEEEECCCCEeecC-----
Confidence            455778877789999999984 578888888866                           55666688899985     


Q ss_pred             CCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcc-cccCCCCCCCCCeEEEEEEEeeeccCc
Q 015659          235 QPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE-AKRDLATIPSCAKLYYEVEMMDFIKEK  304 (403)
Q Consensus       235 ~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~-~~~~~~~ip~~~~l~f~iel~~i~~~~  304 (403)
                      +|++|.+|.+++++||+.+|.+|++||+++|+||+++|||+.+ .   +..|||+++|+|+|+|+++.+..
T Consensus        84 ~p~~f~lG~g~vi~G~eeaL~gMk~Ge~~~v~IP~~~aYG~~g~~---~~~IPp~stLiF~VeL~~i~~~~  151 (157)
T 2jwx_A           84 PELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSR---SPYIPPHAALCLEVTLKTAVDLE  151 (157)
T ss_dssp             EEEEEETTTTSSCHHHHHHTTTSCTTCEEEEEECGGGTTTTTCCS---SSCCCTTCCEEEEEEEEEEEECS
T ss_pred             CCEEEEeCCCChhHHHHHHHcCCCCCCEEEEEECchhcCCccccc---CCCcCCCCeEEEEEEEEEEEccc
Confidence            7999999999999999999999999999999999999999988 5   46799999999999999998654

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=99.82  E-value=9e-20  Score=151.56  Aligned_cols=108  Identities=30%  Similarity=0.439  Sum_probs=95.4

Q ss_pred             CCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCCCeEEE
Q 015659          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (403)
Q Consensus       161 ~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~p~~~~  240 (403)
                      .+.++.++++++|.+. .|..++.|+++                           |++++.||++||++ +++++|++|.
T Consensus        26 ~~~gl~~~~l~~G~G~-~~~~gd~V~v~---------------------------Y~g~~~dG~~fdss-~~~~~p~~f~   76 (133)
T 2y78_A           26 TESGLKYEDLTEGSGA-EARAGQTVSVH---------------------------YTGWLTDGQKFDSS-KDRNDPFAFV   76 (133)
T ss_dssp             CTTSCEEEEEECCSSC-BCCTTSEEEEE---------------------------EEEEETTSCEEEET-TTTTCCEEEE
T ss_pred             CCCCEEEEEEEcCCCC-CCCCCCEEEEE---------------------------EEEEECCCCEEecc-CcCCCCEEEE
Confidence            4567889999999884 67788888876                           55555688999998 7778999999


Q ss_pred             cCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeee
Q 015659          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF  300 (403)
Q Consensus       241 lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i  300 (403)
                      +|.+.+++||+.+|.+|++||+++|.||+++|||+.+.   ...|||+++|+|+|+|++|
T Consensus        77 lG~g~vi~G~eeaL~gmk~Ge~~~v~ip~~~aYG~~~~---~~~Ipp~~~l~f~VeL~~I  133 (133)
T 2y78_A           77 LGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGA---GGVIPPNATLVFEVELLDV  133 (133)
T ss_dssp             TTSSSSCHHHHHHSTTCBTTCEEEEEECGGGTTTTTCB---TTTBCTTCCEEEEEEEEEC
T ss_pred             eCCCChhHHHHHHHcCCCCCCEEEEEECcHHhCCCCCC---CCCCCCCCeEEEEEEEEEC
Confidence            99999999999999999999999999999999999887   4679999999999999975

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.82  E-value=4.6e-20  Score=177.77  Aligned_cols=238  Identities=21%  Similarity=0.303  Sum_probs=170.8

Q ss_pred             eecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCc---cchhHHHhhcCcccCcEE
Q 015659           42 GLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQ---VATGLDNGIITMKKRECA  118 (403)
Q Consensus        42 ~~~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~---~~~gl~~al~~m~~Ge~~  118 (403)
                      ..+++||.|+|+++|+|...|..||.|+|||++++ +|++|++|     |+.|.+|.|.   ++++|+.||.+|++|+++
T Consensus        21 ~~~~~~~~~~~~~~g~g~~~p~~~~~v~v~y~g~~-~g~~fd~~-----~~~f~lG~g~~~~~~~~~e~al~~~~~Ge~~   94 (336)
T 1p5q_A           21 MEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDKLFDQR-----ELRFEIGEGENLDLPYGLERAIQRMEKGEHS   94 (336)
T ss_dssp             -CCTTSEEEEEEECCCCSCCCCTTCEEEEEEEEEE-TTEEEEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCTTCEE
T ss_pred             ecCCCcEEEEEEeCCCCCCCCCCCCeEEEEEEEEE-CCEEEecC-----CeEEEeCCCCccccchHHHHHHhcCCCCCeE
Confidence            45799999999999999558999999999999998 99999986     8999999886   589999999999999999


Q ss_pred             EEEEEcCCCCCCCCCCCC--CCCCCCeEEEEEEeccceeeeccCCCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCC
Q 015659          119 VFTFTLPSELRFGVEGRD--SLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDG  196 (403)
Q Consensus       119 ~v~~~vp~~~ayg~~~~~--~ip~~~~l~~~v~l~~~~~~~dv~~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~  196 (403)
                      .+  .+||+++||..|..  .||+++.+.|++.+.++....+....      .+..     .|   ..+...        
T Consensus        95 ~l--~i~p~~ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~------a~~~-----~p---~~a~~~--------  150 (336)
T 1p5q_A           95 IV--YLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEM------NSEE-----KL---EQSTIV--------  150 (336)
T ss_dssp             EE--EECTTTTTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGC------CHHH-----HH---HHHHHH--------
T ss_pred             EE--EECCccccCcCCCCccCCCCCCeEEEEEEEeecccccchhcC------CHHH-----HH---HHHHHH--------
Confidence            99  99999999999977  69999999999999887543221100      0000     00   000000        


Q ss_pred             ceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCCCeEEEcCC-CCcchHHHHHHcccCCCcEEEEEEcCCCCCCC
Q 015659          197 TMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDE-EQVIAGLDRVAATMKKEEWAIVTINHEYGFGN  275 (403)
Q Consensus       197 ~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~-~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~  275 (403)
                         .                    .-|..+            +..|+ ...+..++.++.....                
T Consensus       151 ---~--------------------~~g~~~------------~~~g~~~~A~~~y~~Al~~~p~----------------  179 (336)
T 1p5q_A          151 ---K--------------------ERGTVY------------FKEGKYKQALLQYKKIVSWLEY----------------  179 (336)
T ss_dssp             ---H--------------------HHHHHH------------HHHTCHHHHHHHHHHHHHHTTT----------------
T ss_pred             ---H--------------------HHHHHH------------HHCCCHHHHHHHHHHHHHHhhc----------------
Confidence               0                    000000            11111 1335556666654210                


Q ss_pred             cccccCCCCCCCCCeEEEEEEEeeeccCcCccccCchHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCC
Q 015659          276 VEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFV  355 (403)
Q Consensus       276 ~~~~~~~~~ip~~~~l~f~iel~~i~~~~~~~~m~~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~  355 (403)
                               .+.            +.   .  ....+-.-..+..+...|..+++.|+|.+|+..|++|+.+-       
T Consensus       180 ---------~~~------------~~---~--~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-------  226 (336)
T 1p5q_A          180 ---------ESS------------FS---N--EEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-------  226 (336)
T ss_dssp             ---------CCC------------CC---S--HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred             ---------ccc------------CC---h--HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------
Confidence                     000            00   0  00011112235667789999999999999999999999972       


Q ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          356 DDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       356 ~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                              +....+++|+|.||+++++|++|+.++++||+++|.+.
T Consensus       227 --------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~  264 (336)
T 1p5q_A          227 --------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK  264 (336)
T ss_dssp             --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred             --------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Confidence                    22356899999999999999999999999999999874

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.82  E-value=1.9e-19  Score=161.02  Aligned_cols=191  Identities=20%  Similarity=0.254  Sum_probs=129.9

Q ss_pred             CCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHh---hcCcccCcEEEEEEEcCCCCCCCCCCCC
Q 015659           60 DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNG---IITMKKRECAVFTFTLPSELRFGVEGRD  136 (403)
Q Consensus        60 ~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~a---l~~m~~Ge~~~v~~~vp~~~ayg~~~~~  136 (403)
                      +.|..++.+.|....   +|          ..+.|.+....-+.-|-.+   -.++... +.+|  .+..........+.
T Consensus        14 ~~~~~~~~i~ikv~~---~~----------~~v~~~i~~~~~l~kl~~~y~~~~g~~~~-~~~f--~fdG~~i~~~~Tpk   77 (209)
T 3uf8_A           14 PEVKPETHINLKVSD---GS----------SEIFFKIKKTTPLRRLMEAFAKRQGKEMD-SLRF--LYDGIRIQADQTPE   77 (209)
T ss_dssp             ----CCSEEEEEEEC---SS----------CEEEEEEETTSCTHHHHHHHHHHHTCCGG-GCEE--EETTEECCTTCCTT
T ss_pred             ceeCCCCcEEEEEEc---CC----------CEEEEEEeeCCHHHHHHHHHHHhhCCChh-eEEE--EECCEeccCCCChH
Confidence            445666766666542   22          2334555544433333333   2333333 3344  44444444444433


Q ss_pred             --CCCCCCeEEEEEEeccceeeeccCCCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeece
Q 015659          137 --SLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDV  214 (403)
Q Consensus       137 --~ip~~~~l~~~v~l~~~~~~~dv~~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v  214 (403)
                        .+..++.+  ++-............+.++.++++++|.|. .|..++.|+++                          
T Consensus        78 ~L~~ed~d~I--~~~~eq~Gg~t~~~~~sGl~~~vl~~G~G~-~~~~gd~V~v~--------------------------  128 (209)
T 3uf8_A           78 DLDMEDNDII--EAHREQIGGSTVVTTESGLKYEDLTEGSGA-EARAGQTVSVH--------------------------  128 (209)
T ss_dssp             TTTCCTTEEE--EEECSCTTCCCCEECTTSCEEEEEECCCSC-BCCTTCEEEEE--------------------------
T ss_pred             Hhhhcccccc--hhhccccccccccCCCCceEEEEEEcCCCC-cCCCCCEEEEE--------------------------
Confidence              23333333  333333333334446778999999999986 48888888876                          


Q ss_pred             EEEEeeccceEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEE
Q 015659          215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYE  294 (403)
Q Consensus       215 ~y~g~~~~g~~fd~s~~~~~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~  294 (403)
                       |+|++.||++||++ +..+.|+.|.+|.+.+++||+.+|.+|++||++.|+|||++|||+.+.   ++.|||+++|+|+
T Consensus       129 -Y~g~l~dG~~fdss-~~~~~P~~f~lG~g~vi~G~eeaL~gM~~Ge~~~v~Ipp~~aYG~~g~---~~~IP~~s~LvF~  203 (209)
T 3uf8_A          129 -YTGWLTDGQKFDSS-KDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGA---AGVIPPNATLVFE  203 (209)
T ss_dssp             -EEEEETTSCEEEES-GGGTCCEEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTTTTCB---TTTBCTTCCEEEE
T ss_pred             -EEEEECCCCEEEEc-cccCCCEEEEeCCCccchhHHHHHhCCCCCCEEEEEECcHHhCCCCCC---CCCcCCCCeEEEE
Confidence             55666788999999 777899999999999999999999999999999999999999999987   5679999999999


Q ss_pred             EEEeee
Q 015659          295 VEMMDF  300 (403)
Q Consensus       295 iel~~i  300 (403)
                      |+|++|
T Consensus       204 VeL~~I  209 (209)
T 3uf8_A          204 VELLDV  209 (209)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            999985

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.82  E-value=3.7e-20  Score=147.02  Aligned_cols=94  Identities=39%  Similarity=0.667  Sum_probs=89.1

Q ss_pred             CCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCCCCCCCCCCCC-CC
Q 015659           60 DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD-SL  138 (403)
Q Consensus        60 ~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~~~ayg~~~~~-~i  138 (403)
                      ..++.||.|++||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++|++++|  .|||++|||..+.+ .|
T Consensus         4 ~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v--~ip~~~ayG~~~~~~~I   81 (102)
T 2pbc_A            4 IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKL--VIPSELGYGERGAPPKI   81 (102)
T ss_dssp             CCCCTTCEEEEEEEEECTTSCEEEESTTTTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEE--EECGGGTTTTTCBTTTB
T ss_pred             CcCCCCCEEEEEEEEEECCCCEEEeCCCCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEE--EECHHHCcCCCCCCCCc
Confidence            6799999999999999889999999998779999999999999999999999999999999  99999999999876 79


Q ss_pred             CCCCeEEEEEEecccee
Q 015659          139 PPNSVVQFEVELVSWIT  155 (403)
Q Consensus       139 p~~~~l~~~v~l~~~~~  155 (403)
                      |++++++|+|+|+++..
T Consensus        82 p~~~~l~f~v~l~~v~~   98 (102)
T 2pbc_A           82 PGGATLVFEVELLKIER   98 (102)
T ss_dssp             CTTCCEEEEEEEEEEGG
T ss_pred             CcCCeEEEEEEEEEecc
Confidence            99999999999998864

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.82  E-value=4.3e-20  Score=154.09  Aligned_cols=122  Identities=26%  Similarity=0.287  Sum_probs=105.2

Q ss_pred             eeeccCCCcceeeEEeecCCcC-CCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCC
Q 015659          155 TVVDLSKDGGIVKKILEKGERD-ASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDG  233 (403)
Q Consensus       155 ~~~dv~~d~~v~k~il~~G~g~-~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~  233 (403)
                      .+.++++++++.++++++|.|. ..|..++.|++|                           |++++.||++||++    
T Consensus         9 ~~~~~~~~g~l~~~vl~~G~G~~~~~~~gd~V~v~---------------------------Y~g~~~dG~~fds~----   57 (135)
T 2d9f_A            9 EWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVH---------------------------LQTSLENGTRVQEE----   57 (135)
T ss_dssp             SCEESSSSSSSEEEEEECCCSSCCCCCTTSEEEEE---------------------------EEEEESSSCEEEEE----
T ss_pred             cCcEECCCCCEEEEEEEcCCCCCccCCCCCEEEEE---------------------------EEEEECCCCEEecC----
Confidence            4567788888999999999985 578888888876                           55555678888875    


Q ss_pred             CCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcc-cccCCCCCCCCCeEEEEEEEeeeccCcCccccCc
Q 015659          234 EQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE-AKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNN  311 (403)
Q Consensus       234 ~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~-~~~~~~~ip~~~~l~f~iel~~i~~~~~~~~m~~  311 (403)
                       +|+.|.+|.+.+++||+.+|.+|++||+++|.||+++|||+.+ .   +..|||+++|+|+|+|+++.+.++...++.
T Consensus        58 -~p~~f~lG~g~~i~G~e~~L~gm~~Ge~~~v~ip~~~aYG~~~~~---~~~Ip~~~~l~f~vel~~v~~~~~~e~~s~  132 (135)
T 2d9f_A           58 -PELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSR---SPYIPPHAALCLEVTLKTAVDRPDLEMSGP  132 (135)
T ss_dssp             -EEEEEETTSCCSCTTTTTTGGGSCTTCEEEEEECHHHHTCTTCCS---SSCCCTTCCEEEEEEEEEEESSCSSSSCCC
T ss_pred             -CCEEEEeCCCChhHHHHHHHhCCCCCCEEEEEEChhHccCcCCcC---CCccCCCCeEEEEEEEEEeecCCchhhcCc
Confidence             7999999999999999999999999999999999999999987 4   468999999999999999998776665554

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=99.82  E-value=1.5e-19  Score=149.02  Aligned_cols=112  Identities=21%  Similarity=0.321  Sum_probs=97.1

Q ss_pred             CCCcceeeEEeecCCc-CCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeec-cceEEeecCCC--CCC
Q 015659          160 SKDGGIVKKILEKGER-DASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE-DGTVFEKKGYD--GEQ  235 (403)
Q Consensus       160 ~~d~~v~k~il~~G~g-~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~-~g~~fd~s~~~--~~~  235 (403)
                      ..+.++.++++++|.+ ...+..++.|++|                           |++++. ||++||++ +.  .++
T Consensus         9 ~~~~gl~~~~l~~g~~~g~~~~~gd~V~v~---------------------------Y~g~~~~dG~~fdss-~~~~~~~   60 (125)
T 4dip_A            9 IPEPEVKIEVLQKPFICHRKTKGGDLMLVH---------------------------YEGYLEKDGSLFHST-HKHNNGQ   60 (125)
T ss_dssp             CCCCCCEEEEEECCSCCSCCCCTTCEEEEE---------------------------EEEEETTTCCEEEEH-HHHTTTC
T ss_pred             ECCCCeEEEEEEcCCCCCCcCCCCCEEEEE---------------------------EEEEECCCCcEEEEc-ccCCCCc
Confidence            4567889999999974 3477788888876                           556665 78899998 53  468


Q ss_pred             CeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeccC
Q 015659          236 PLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKE  303 (403)
Q Consensus       236 p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~~~  303 (403)
                      |+.|.+|.+.+++||+.+|.+|++||++.|.|||++|||+.+.    +.|||+++|+|+|+|+++++.
T Consensus        61 p~~f~lG~~~~i~G~e~~l~gm~~Ge~~~~~ip~~~aYG~~g~----~~Ip~~~~l~f~vel~~i~~~  124 (125)
T 4dip_A           61 PIWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPALGYGKEGK----GKIPPESTLIFNIDLLEIRNG  124 (125)
T ss_dssp             CEEEETTSCSSCHHHHHHSTTCCTTCEEEEEECGGGTTTTTCB----TTBCTTCCEEEEEEEEEEECC
T ss_pred             CEEEEeCCCChhHHHHHHHhCCCCCCEEEEEEChHHhcCCCCC----CCCCCCCeEEEEEEEEEEEcC
Confidence            9999999999999999999999999999999999999999886    489999999999999999864

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=99.79  E-value=5.3e-19  Score=157.86  Aligned_cols=104  Identities=27%  Similarity=0.407  Sum_probs=93.3

Q ss_pred             CCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCCCeEEE
Q 015659          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (403)
Q Consensus       161 ~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~p~~~~  240 (403)
                      .+.|+.++++++|.|. .|..++.|+++                           |+|++.||++||+|    +.|++|.
T Consensus       115 ~~sGl~y~vl~~G~G~-~p~~gd~V~V~---------------------------Y~g~l~dG~vfDss----~~P~~f~  162 (219)
T 3oe2_A          115 LADGILMTELTPGTGP-KPDANGRVEVR---------------------------YVGRLPDGKIFDQS----TQPQWFR  162 (219)
T ss_dssp             CGGGCEEEEEECCCSC-CCCTTSEEEEE---------------------------EEEECTTSCEEEEC----SSCEEEE
T ss_pred             CCCCeEEEEEecCCCc-cCCCCCEEEEE---------------------------EEEEECCCCEeecc----CCcEEEE
Confidence            4567899999999986 78888888865                           66677788999987    7899999


Q ss_pred             cCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeec
Q 015659          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (403)
Q Consensus       241 lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~  301 (403)
                      +|  .+||||+.+|.+|++|++++|+|||++|||+.+.   ++.|||+++|+|+|+|++|+
T Consensus       163 lG--~vI~G~eeaL~gMk~Gek~~v~IPp~lAYG~~g~---~~~IPpnstLvFeVeLl~Ik  218 (219)
T 3oe2_A          163 LD--SVISGWTSALQNMPTGAKWRLVIPSDQAYGAEGA---GDLIDPFTPLVFEIELIAVS  218 (219)
T ss_dssp             GG--GSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCB---TTTBCTTCCEEEEEEEEEEE
T ss_pred             ec--chhHHHHHHHhCCCCCCEEEEEECchhcCCCCCC---CCCCCCCCeEEEEEEEEEEe
Confidence            98  8999999999999999999999999999999987   45799999999999999986

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.79  E-value=3.6e-19  Score=141.31  Aligned_cols=86  Identities=34%  Similarity=0.512  Sum_probs=78.4

Q ss_pred             eEEEEeeccceEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEE
Q 015659          214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYY  293 (403)
Q Consensus       214 v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f  293 (403)
                      +||++++.||++||++ +.+++|+.|.+|.+++++||+.+|.+|++||+++|.+|+++|||+.+.   ++.|||+++|+|
T Consensus        14 v~y~~~~~dG~~~d~s-~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~---~~~Ip~~~~l~f   89 (102)
T 2pbc_A           14 MHYTGKLEDGTEFDSS-LPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGA---PPKIPGGATLVF   89 (102)
T ss_dssp             EEEEEECTTSCEEEES-TTTTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCB---TTTBCTTCCEEE
T ss_pred             EEEEEEECCCCEEEeC-CCCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCC---CCCcCcCCeEEE
Confidence            4567777789999999 777799999999999999999999999999999999999999999887   568999999999


Q ss_pred             EEEEeeeccC
Q 015659          294 EVEMMDFIKE  303 (403)
Q Consensus       294 ~iel~~i~~~  303 (403)
                      +|+|+++.+.
T Consensus        90 ~v~l~~v~~~   99 (102)
T 2pbc_A           90 EVELLKIERR   99 (102)
T ss_dssp             EEEEEEEGGG
T ss_pred             EEEEEEeccc
Confidence            9999999864

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=99.78  E-value=1.7e-18  Score=161.88  Aligned_cols=116  Identities=34%  Similarity=0.501  Sum_probs=104.4

Q ss_pred             eeccC--CCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCC
Q 015659          156 VVDLS--KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDG  233 (403)
Q Consensus       156 ~~dv~--~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~  233 (403)
                      ..|++  .++++.++++++|.|+..|..++.|+++                           |+|++.||++||++ +.+
T Consensus        42 ~~di~~~~~~gl~~~vl~~G~G~~~~~~gd~V~v~---------------------------Y~g~~~dG~~fdss-~~~   93 (280)
T 1q1c_A           42 GVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVH---------------------------YTGWLLDGTKFDSS-LDR   93 (280)
T ss_dssp             CEECCSSCSSSEEEEEEECCSSSCCCCTTCEEEEE---------------------------EEEEETTSCEEEES-TTS
T ss_pred             ccccccCCCCceEEEEEeCCCCCcCCCCCCEEEEE---------------------------EEEEECCCCEEEec-ccC
Confidence            45666  7889999999999999779999999876                           55566688999998 677


Q ss_pred             CCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeecc
Q 015659          234 EQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK  302 (403)
Q Consensus       234 ~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~~  302 (403)
                      ++|+.|.+|.+.+++||+.+|.+|++||++.|+|||++|||+.+.   ++.||++++|+|+|+|++|..
T Consensus        94 ~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~ipp~~aYG~~g~---~~~Ip~~~~lvf~Vel~~i~~  159 (280)
T 1q1c_A           94 KDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGS---PPKIPPNATLVFEVELFEFKG  159 (280)
T ss_dssp             SSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCB---TTTBCTTCCEEEEEEEEEEEC
T ss_pred             CCCEEEEECCcChhHHHHHHHhcCCCCCEEEEEECcHHhCCCcCc---cCCCCCCCcEEEEEEeeeecc
Confidence            799999999999999999999999999999999999999999887   578999999999999999975

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=99.78  E-value=7.7e-19  Score=156.88  Aligned_cols=108  Identities=25%  Similarity=0.395  Sum_probs=95.7

Q ss_pred             CCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCCCeEEE
Q 015659          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (403)
Q Consensus       161 ~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~p~~~~  240 (403)
                      ...++.++++++|.|. .|..++.|++|                           |+|++.||++||++ +.++.|++|.
T Consensus       104 ~~sGl~y~vl~~G~G~-~p~~gD~V~V~---------------------------Y~g~l~dG~vfdss-~~~g~p~~f~  154 (213)
T 1fd9_A          104 LPSGLQYKVINSGNGV-KPGKSDTVTVE---------------------------YTGRLIDGTVFDST-EKTGKPATFQ  154 (213)
T ss_dssp             CTTSCEEEEEECCCSC-CCCTTCEEEEE---------------------------EEEEETTSCEEEEH-HHHCSCEEEE
T ss_pred             CCCccEEEEEecCCCc-cCCCCCEEEEE---------------------------EEEEECCCCEEeec-cccCCCEEEE
Confidence            4567889999999985 78888888865                           66667788999999 6778999999


Q ss_pred             cCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeecc
Q 015659          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK  302 (403)
Q Consensus       241 lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~~  302 (403)
                      +|  .+||||+.+|.+|++|++++|+|||+++||+.+.   ++.|||+++|+|+|+|++|.+
T Consensus       155 lg--~vI~G~eeaL~gMk~Gek~~v~IP~~laYG~~g~---~~~Ipp~stLiF~VeLl~v~~  211 (213)
T 1fd9_A          155 VS--QVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSV---GGPIGPNETLIFKIHLISVKK  211 (213)
T ss_dssp             GG--GSCHHHHHHHTTCCTTCEEEEEECGGGTTTTCCC---SSSCCTTCCEEEEEEEEEEEC
T ss_pred             cC--chhhHHHHHHcCCCCCCEEEEEECchhccCccCC---CCCCCCCCeEEEEEEEEEEEc
Confidence            95  8999999999999999999999999999999886   568999999999999999975

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=99.77  E-value=1.2e-18  Score=144.19  Aligned_cols=110  Identities=23%  Similarity=0.336  Sum_probs=93.6

Q ss_pred             CcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCCCeEEEc
Q 015659          162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFIT  241 (403)
Q Consensus       162 d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~p~~~~l  241 (403)
                      +.++.++++++|.|. .+..++.|++|                           |++++.||++||++ +.+++|+.|.+
T Consensus        11 ~~Gl~~~~l~~G~G~-~~~~gd~V~v~---------------------------Y~g~~~dG~~fdss-~~~~~p~~f~l   61 (129)
T 1u79_A           11 PSGLAFCDKVVGYGP-EAVKGQLIKAH---------------------------YVGKLENGKVFDSS-YNRGKPLTFRI   61 (129)
T ss_dssp             TTSCEEEEEECCSSC-BCCTTCEEEEE---------------------------EEEECTTSCEEEEH-HHHTSCEEEET
T ss_pred             CCCeEEEEEEcCCCC-CCCCCCEEEEE---------------------------EEEEECCCCEEEec-CCCCCCEEEEe
Confidence            457889999999885 67788888876                           55556678899998 66678999999


Q ss_pred             CCCCcchHHHHHHcc------cCCCcEEEEEEcCCCCCCCccccc--CCCCCCCCCeEEEEEEEeee
Q 015659          242 DEEQVIAGLDRVAAT------MKKEEWAIVTINHEYGFGNVEAKR--DLATIPSCAKLYYEVEMMDF  300 (403)
Q Consensus       242 G~~~v~~gl~~~l~~------m~~Ge~~~v~i~~~~~yg~~~~~~--~~~~ip~~~~l~f~iel~~i  300 (403)
                      |.+.+++||+.+|.+      |++||+++|.|||++|||+.+...  .+..|||+++|+|+|+|++|
T Consensus        62 G~~~~i~G~~~~L~G~~~~~~m~~Ge~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           62 GVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             TSSSSCHHHHHHHHCBTTBCCCBTTCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             CCCCccHHHHHHhcccccccccCCCCEEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence            999999999999988      999999999999999999987521  12479999999999999986

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=99.77  E-value=3.1e-18  Score=154.01  Aligned_cols=105  Identities=31%  Similarity=0.545  Sum_probs=93.1

Q ss_pred             CcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCCCeEEEc
Q 015659          162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFIT  241 (403)
Q Consensus       162 d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~p~~~~l  241 (403)
                      +.++.++++++|.|. .|..++.|++|                           |+|++.||++||++ +.++.|++|.+
T Consensus       120 ~sGl~y~vl~~G~G~-~p~~gD~V~V~---------------------------Y~g~l~dG~vfdss-~~~g~p~~f~l  170 (224)
T 1q6h_A          120 STGLVYQVVEAGKGE-APKDSDTVVVN---------------------------YKGTLIDGKEFDNS-YTRGEPLSFRL  170 (224)
T ss_dssp             TTSCEEEEEECCSSC-CCCTTCEEEEE---------------------------EEEEETTSCEEEEG-GGGTSCEEEEG
T ss_pred             CCceEEEEEecccCc-cccCCCEEEEE---------------------------EEEEeCCCCEEeec-cccCCCEEEEc
Confidence            567889999999886 77788888865                           66677789999999 77789999999


Q ss_pred             CCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeec
Q 015659          242 DEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (403)
Q Consensus       242 G~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~  301 (403)
                      |  .+||||+.+|.+|++|++++|+|||+++||+.+.   + .|||+++|+|+|+|++|+
T Consensus       171 g--~vI~G~eeaL~gMk~Gek~~v~IP~~laYG~~g~---~-~IPp~stLiF~VeL~~ik  224 (224)
T 1q6h_A          171 D--GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGV---P-GIPPNSTLVFDVELLDVK  224 (224)
T ss_dssp             G--GSCHHHHHHGGGSCTTCEEEEEECGGGTTTTTCB---T-TBCTTCCEEEEEEEEEEC
T ss_pred             C--CcchhHHHHHcCCCCCCEEEEEECchhhcCcCCC---C-CCCCCCEEEEEEEEEEeC
Confidence            5  8999999999999999999999999999999886   3 499999999999999874

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}

Probab=99.77  E-value=1.2e-18  Score=149.55  Aligned_cols=125  Identities=22%  Similarity=0.376  Sum_probs=96.4

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCCCCCCCCCCCCCCCC
Q 015659           61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPP  140 (403)
Q Consensus        61 ~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~~~ayg~~~~~~ip~  140 (403)
                      .++.||.|+|||++++.||++|++|+.+++|+.|.+|.+++++||+++|.+|++|++++|  .|||++|||+++..    
T Consensus        24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v--~Ipp~~AYG~~~~~----   97 (169)
T 4dt4_A           24 SVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTF--SLEPDAAFGVPSPD----   97 (169)
T ss_dssp             SCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEE--EECGGGTTCCCCGG----
T ss_pred             cCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHcCCCCCCEEEE--EEChHHhcCCCChH----
Confidence            589999999999999999999999987778999999999999999999999999999999  99999999998743    


Q ss_pred             CCeEEEEEEeccceee--------eccC-CCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeec
Q 015659          141 NSVVQFEVELVSWITV--------VDLS-KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK  201 (403)
Q Consensus       141 ~~~l~~~v~l~~~~~~--------~dv~-~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~  201 (403)
                         ++..+....+...        ..+. .++..+..++.+       ..++.|++++||+|+|.++.|+
T Consensus        98 ---lv~~vp~~~f~~~~~~~~G~~~~~~~~~G~~~~~~V~~-------v~~~~V~vD~NHPLAGk~L~F~  157 (169)
T 4dt4_A           98 ---LIQYFSRREFMDAGEPEIGAIMLFTAMDGSEMPGVIRE-------INGDSITVDFNHPLAGQTVHFD  157 (169)
T ss_dssp             ---GEEEEEGGGGTTTCCCCTTCEEEEECTTSCEEEEEEEE-------EETTEEEEECSCTTTTCCEEEE
T ss_pred             ---HEEEeCHHHCCCcCCCCCCcEEEEECCCCCEEEEEEEE-------EcCCEEEEeCCCccCCCEEEEE
Confidence               3333333333211        1111 223222222221       2467999999999999998885

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}

Probab=99.75  E-value=8.5e-18  Score=142.48  Aligned_cols=124  Identities=22%  Similarity=0.334  Sum_probs=96.1

Q ss_pred             CCCCCCCEEEEEEEEEEc-CCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCCCCCCCCCCCCCC
Q 015659           60 DTPEFGDEVTIHYVGTLL-DGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSL  138 (403)
Q Consensus        60 ~~~~~gd~V~v~y~~~~~-~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~~~ayg~~~~~~i  138 (403)
                      ..++.||.|++||++++. +|++|++|+.. .|+.|.+|.+++++||+++|.+|++|++++|  .|||+.|||+++.   
T Consensus         5 ~~i~~gd~V~v~Y~g~~~~dG~~fdss~~~-~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v--~ipp~~aYG~~~~---   78 (151)
T 2kr7_A            5 DLESIKQAALIEYEVREQGSSIVLDSNISK-EPLEFIIGTNQIIAGLEKAVLKAQIGEWEEV--VIAPEEAYGVYES---   78 (151)
T ss_dssp             CCTTSCCEEEEEEEEEESSCSCEEEESTTT-CCEEEETTCCCSCHHHHHHHTTCCBTCEEEE--EECGGGTTCSSCS---
T ss_pred             cCCCCCCEEEEEEEEEECCCCCEEEeCCCC-cCEEEEECCCCccHHHHHHHcCCCCCCEEEE--EEecHHHcCCCCc---
Confidence            468899999999999998 99999999865 8999999999999999999999999999999  9999999999874   


Q ss_pred             CCCCeEEEEEEeccceeeeccC---------CCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeec
Q 015659          139 PPNSVVQFEVELVSWITVVDLS---------KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK  201 (403)
Q Consensus       139 p~~~~l~~~v~l~~~~~~~dv~---------~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~  201 (403)
                          .+++.+....+ ....+.         .++....-++       ....++.|++++||+|+|.++.|+
T Consensus        79 ----~~v~~v~~~~f-~~~~~~~G~~~~~~~~~G~~~~~~V-------~~v~~~~v~vD~NHPLAG~~L~F~  138 (151)
T 2kr7_A           79 ----SYLQEVPRDQF-EGIELEKGMSVFGQTEDNQTIQAII-------KDFSATHVMVDYNHPLAGKTLAFR  138 (151)
T ss_dssp             ----CEEEEEEGGGG-TTSCCCTTCEEEEEETTTEEEEEEE-------EEECSSEEEEEECCTTSCCCEEEE
T ss_pred             ----ceEEEEcHHHc-CCCCCccCCEEEEECCCCCEEEEEE-------EEECCCEEEEECCCcCCCCEEEEE
Confidence                34455544444 111111         1222111111       122568999999999999998885

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A

Probab=99.73  E-value=2e-18  Score=146.67  Aligned_cols=128  Identities=28%  Similarity=0.405  Sum_probs=92.2

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEeccCCC-------------CCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCCC
Q 015659           61 TPEFGDEVTIHYVGTLLDGTKFDSTRDR-------------YDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSE  127 (403)
Q Consensus        61 ~~~~gd~V~v~y~~~~~~g~~~~ss~~~-------------~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~~  127 (403)
                      .++.||.|+|||++++ +|++|++|+..             ++|+.|.+|.+++++||+++|.+|++|++++|  .|||+
T Consensus         1 ~i~~Gd~V~v~Y~g~l-dG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v--~Ipp~   77 (157)
T 3pr9_A            1 MVEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREV--VLPPE   77 (157)
T ss_dssp             CCCTTCEEEEEEEEEE-TTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEE--EECGG
T ss_pred             CCCCCCEEEEEEEEEE-CCEEEEeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEE--EECcH
Confidence            3688999999999999 99999999863             37999999999999999999999999999999  99999


Q ss_pred             CCCCCCCCCCCCCCCeEEEEEEeccceeeeccCCCcceeeEEeecC-CcCCCCCCCCceEEEEEeeeCCCceeec
Q 015659          128 LRFGVEGRDSLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKG-ERDASPGDLDEVLVKYQVMLGDGTMVAK  201 (403)
Q Consensus       128 ~ayg~~~~~~ip~~~~l~~~v~l~~~~~~~dv~~d~~v~k~il~~G-~g~~~p~~~~~V~i~y~~~l~~~~~v~~  201 (403)
                      +|||+++..       ++..+....+.. .++....|..-..  .+ .+......++.|++++||||+|.++.|+
T Consensus        78 ~aYG~~~~~-------~V~~v~~~~f~~-~~~~~~~G~~~~~--~~~~~~V~~v~~~~V~vD~NHPLAG~~L~F~  142 (157)
T 3pr9_A           78 KAFGKRDPS-------KIKLIPLSEFTK-RGIKPIKGLTITI--DGIPGKIVSINSGRVLVDFNHELAGKEVKYR  142 (157)
T ss_dssp             GTTCCCCGG-------GEEEEEHHHHHH-TTCCCCTTCEEEE--TTEEEEEEEEETTEEEEECSCTTTTCCEEEE
T ss_pred             HhcCCCChH-------hEEEcCHHHCCc-ccCCcCCCcEEEe--cCCCeEEEEEcCCEEEEECCCccCCCeEEEE
Confidence            999999744       233333222211 0111100100000  00 0111222567999999999999998885

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1

Probab=99.72  E-value=3.7e-18  Score=144.70  Aligned_cols=123  Identities=22%  Similarity=0.432  Sum_probs=92.8

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEeccCC-------------CCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCCC
Q 015659           61 TPEFGDEVTIHYVGTLLDGTKFDSTRD-------------RYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSE  127 (403)
Q Consensus        61 ~~~~gd~V~v~y~~~~~~g~~~~ss~~-------------~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~~  127 (403)
                      .++.||.|++||++++.+|++|++|+.             ...|+.|.+|.+++++||+++|.+|++|++++|  .|||+
T Consensus         1 ~i~~gd~V~v~Y~g~~~dG~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v--~ipp~   78 (151)
T 1ix5_A            1 MVDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTV--KIPAE   78 (151)
T ss_dssp             CCCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEE--EECTT
T ss_pred             CCCCCCEEEEEEEEEECCCCEEEecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEE--EECcH
Confidence            368899999999999889999999974             237999999999999999999999999999999  99999


Q ss_pred             CCCCCCCCCCCCCCCeEEEEEEecccee-------eeccCCCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceee
Q 015659          128 LRFGVEGRDSLPPNSVVQFEVELVSWIT-------VVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVA  200 (403)
Q Consensus       128 ~ayg~~~~~~ip~~~~l~~~v~l~~~~~-------~~dv~~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~  200 (403)
                      +|||+++..       +++.+.+..+..       ...+.-.. ..-+++.        ..++.|++++||+|+|.++.|
T Consensus        79 ~aYG~~~~~-------~v~~v~~~~f~~~~~~~~~G~~~~~~~-~~~~V~~--------v~~~~v~vD~NHPLAG~~L~F  142 (151)
T 1ix5_A           79 KAYGNRNEM-------LIQKIPRDAFKEADFEPEEGMVILAEG-IPATITE--------VTDNEVTLDFNHELAGKDLVF  142 (151)
T ss_dssp             TSSCSCCST-------TBCCEETHHHHTSTTCCCTTEEEESSS-CEEEEEE--------EETTEEEEECCCSSTTCCEEE
T ss_pred             HHCCCCCcc-------EEEEEEHHHcCccCCcccccCEEEECC-eEEEEEE--------EcCCEEEEeCCCCCCCCeEEE
Confidence            999998754       233333333321       00011111 1111221        245799999999999999888


Q ss_pred             c
Q 015659          201 K  201 (403)
Q Consensus       201 ~  201 (403)
                      +
T Consensus       143 ~  143 (151)
T 1ix5_A          143 T  143 (151)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}

Probab=99.72  E-value=1.9e-17  Score=145.56  Aligned_cols=129  Identities=17%  Similarity=0.189  Sum_probs=94.2

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCCCCCCCCCCCCCCCCC
Q 015659           62 PEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPN  141 (403)
Q Consensus        62 ~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~~~ayg~~~~~~ip~~  141 (403)
                      ++.||.|+|+|++++.+|++|++|+.+ +|+.|.+|.++++|+|+++|.+|++|++++|  .|||+.|||+++..     
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~~-~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v--~Ippe~aYGe~~~~-----   74 (196)
T 2kfw_A            3 VAKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDV--AVGANDAYGQYDEN-----   74 (196)
T ss_dssp             CCSSCEEEEEEEEEETTTEEEEECCTT-SCCEEESSSSSSCHHHHHHHSSSCTTCEEEE--ECSTTTTSSCCCTT-----
T ss_pred             CCCCCEEEEEEEEEECCCCEEEecCCC-CCEEEEECCCCcchHHHHHHcCCCCCCEEEE--EeCcHHhcCCCChh-----
Confidence            789999999999998899999999865 8999999999999999999999999999999  99999999998754     


Q ss_pred             CeEEEEEEeccceeeeccCCCcceeeEEeecC--CcCCCCCCCCceEEEEEeeeCCCceeec
Q 015659          142 SVVQFEVELVSWITVVDLSKDGGIVKKILEKG--ERDASPGDLDEVLVKYQVMLGDGTMVAK  201 (403)
Q Consensus       142 ~~l~~~v~l~~~~~~~dv~~d~~v~k~il~~G--~g~~~p~~~~~V~i~y~~~l~~~~~v~~  201 (403)
                        +++.+....+.....+.. +..+......|  .+..+....+.|++++||||++.++.|+
T Consensus        75 --lV~~vp~~~f~~~~~~~~-G~~~~~~~~~G~~~~~V~~v~~~~V~vD~NHPLAGk~L~F~  133 (196)
T 2kfw_A           75 --LVQRVPKDVFMGVDELQV-GMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLKFN  133 (196)
T ss_dssp             --TCEEECGGGCCCSSCCCT-TCEEEEEETTEEEEEEBCCCCSSSEEECCCCTTSCCCCEEE
T ss_pred             --hEEEEEHHHCCCccCccc-CCEEEEECCCCcEEEEEEEEcCCEEEEeCCCCCCCCeEEEE
Confidence              223333322211111110 11111000011  0112334678999999999999998885

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}

Probab=99.72  E-value=4.8e-17  Score=140.28  Aligned_cols=122  Identities=18%  Similarity=0.214  Sum_probs=93.6

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCCCCCCCCCCCCCCCCC
Q 015659           62 PEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPN  141 (403)
Q Consensus        62 ~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~~~ayg~~~~~~ip~~  141 (403)
                      ++.||.|+++|++++.+|++|++|+.+ +|+.|.+|.++++|||+++|.+|++|++++|  .|||+.|||+++..     
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~~-~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v--~ippe~aYG~~~~~-----   74 (171)
T 2k8i_A            3 VAKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDV--AVGANDAYGQYDEN-----   74 (171)
T ss_dssp             CCTTEEEEEEEEEEETTSCEEEECCSS-SCEEEETTSCSSCSHHHHHHTTCCTTCEEEE--EEETTTSSCCCCTT-----
T ss_pred             CCCCCEEEEEEEEEECCCCEEeeccCC-cCEEEEECCCCcchHHHHHHcCCCCCCEEEE--EECcHHhcCCCChh-----
Confidence            678999999999998899999999865 8999999999999999999999999999999  99999999998743     


Q ss_pred             CeEEEEEEeccceeeeccC---------CCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeec
Q 015659          142 SVVQFEVELVSWITVVDLS---------KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK  201 (403)
Q Consensus       142 ~~l~~~v~l~~~~~~~dv~---------~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~  201 (403)
                        +++.+....+.....+.         .++.+..+|+.        ..++.|++++||+|++.++.|+
T Consensus        75 --~v~~v~~~~f~~~~~~~~G~~~~~~~~~G~~~~~V~~--------v~~~~V~vD~NHPLAGk~L~F~  133 (171)
T 2k8i_A           75 --LVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITA--------VEDDHVVVDGNHMLAGQNLKFN  133 (171)
T ss_dssp             --SEEEEEGGGGTTSSCCCTTCEEEEEETTEEEEEEEEE--------ECSSEEEEESCCSSCCCEEEEE
T ss_pred             --hEEEeeHHHCCcccCccCCcEEEEECCCCcEEEEEEE--------EcCCEEEEeCCCCCCCCeEEEE
Confidence              23333333332111111         12211111222        2567999999999999998885

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A

Probab=99.69  E-value=1.7e-17  Score=149.24  Aligned_cols=127  Identities=28%  Similarity=0.392  Sum_probs=91.2

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEeccCCC-------------CCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCCCC
Q 015659           62 PEFGDEVTIHYVGTLLDGTKFDSTRDR-------------YDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSEL  128 (403)
Q Consensus        62 ~~~gd~V~v~y~~~~~~g~~~~ss~~~-------------~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~~~  128 (403)
                      ++.||.|++||++++ ||++|++|+..             +.|+.|.+|.+++++||+++|.+|++|++++|  .|||++
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v--~Ippe~   78 (231)
T 3prb_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREV--VLPPEK   78 (231)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEE--EECGGG
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEE--EeCcHH
Confidence            688999999999999 99999999853             37999999999999999999999999999999  999999


Q ss_pred             CCCCCCCCCCCCCCeEEEEEEeccceeeeccCCCcceeeEEeecC-CcCCCCCCCCceEEEEEeeeCCCceeec
Q 015659          129 RFGVEGRDSLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKG-ERDASPGDLDEVLVKYQVMLGDGTMVAK  201 (403)
Q Consensus       129 ayg~~~~~~ip~~~~l~~~v~l~~~~~~~dv~~d~~v~k~il~~G-~g~~~p~~~~~V~i~y~~~l~~~~~v~~  201 (403)
                      |||+++..       ++..+..-.+.. .++....|..-.  ..| .+......++.|++++||||+|.++.|+
T Consensus        79 AYGe~~~~-------lv~~vp~~~f~~-~~~~~~vG~~~~--~~~~~g~V~~v~~~~V~vD~NHPLAGk~L~F~  142 (231)
T 3prb_A           79 AFGKRDPS-------KIKLIPLSEFTK-RGIKPIKGLTIT--IDGIPGKIVSINSGRVLVDFNHELAGKEVKYR  142 (231)
T ss_dssp             TTCCCCGG-------GEEEEETHHHHT-TTCCCCTTCEEE--ETTEEEEEEEEETTEEEEECSCTTTTCCEEEE
T ss_pred             hcCCCChH-------HEEecCHHHCCc-ccCCCCCCcEEE--ecCCCEEEEEEcCCEEEEeCCCccCCCEEEEE
Confidence            99999854       222222222211 001100000000  000 0111122467999999999999998885

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*

Probab=99.63  E-value=3.4e-16  Score=133.29  Aligned_cols=118  Identities=18%  Similarity=0.235  Sum_probs=91.1

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCCCCCCCCCCCCCCCCC
Q 015659           62 PEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPN  141 (403)
Q Consensus        62 ~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~~~ayg~~~~~~ip~~  141 (403)
                      ++.||.|++||+++ .||++|++|+     +.|.+|.++++|||+++|.+|++|++++|  .|||+.|||+++.      
T Consensus         3 i~~gd~V~v~Y~g~-~dG~~fdss~-----~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v--~ipp~~aYG~~~~------   68 (158)
T 3cgm_A            3 VGQDKVVTIRYTLQ-VEGEVLDQGE-----LSYLHGHRNLIPGLEEALEGREEGEAFQA--HVPAEKAYGPHDP------   68 (158)
T ss_dssp             CCTTEEEEEEEEEE-ETTEEEEEEE-----EEEETTSSSSCHHHHHHHTTCBTTCEEEE--EECGGGTTCCCCG------
T ss_pred             CCCCCEEEEEEEEE-ECCEEEEeeE-----EEEEECCCCcChHHHHHHcCCCCCCEEEE--EECcHHHcCCCCc------
Confidence            67899999999999 8999999986     89999999999999999999999999999  9999999999863      


Q ss_pred             CeEEEEEEeccceeeecc--------C-CCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeec
Q 015659          142 SVVQFEVELVSWITVVDL--------S-KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK  201 (403)
Q Consensus       142 ~~l~~~v~l~~~~~~~dv--------~-~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~  201 (403)
                       .+++.+.+..+.....+        . .++.....++.       ...++.|++++||+|++.++.|+
T Consensus        69 -~lv~~v~~~~f~~~~~~~~G~~~~~~~~~G~~~~~~V~-------~v~~~~v~vD~NHPLAGk~L~F~  129 (158)
T 3cgm_A           69 -EGVQVVPLSAFPEDAEVVPGAQFYAQDMEGNPMPLTVV-------AVEGEEVTVDFNHPLAGKDLDFQ  129 (158)
T ss_dssp             -GGEEEEEGGGSCTTSCCCTTCEEEEEETTTEEEEEEEE-------EEETTEEEEECSCTTTTCCEEEE
T ss_pred             -ceEEEEEHHHCCCCCCCccCCEEEEECCCCCEEEEEEE-------EECCCEEEEeCCccccCCEEEEE
Confidence             44566655554321111        1 12221111111       12567999999999999998885

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=99.61  E-value=1.5e-15  Score=122.16  Aligned_cols=84  Identities=24%  Similarity=0.394  Sum_probs=74.8

Q ss_pred             CCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcC-CCCCCCCCCCCCC
Q 015659           60 DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLP-SELRFGVEGRDSL  138 (403)
Q Consensus        60 ~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp-~~~ayg~~~~~~i  138 (403)
                      ..++.||.|+++|++++ ||++|++|+  ++|+.|.+|.++++|||+++|.+|++|++++|  .|| |.. ||..+.   
T Consensus        28 ~~~~~gD~V~v~Y~g~~-dG~~fdss~--~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v--~i~fP~~-Yg~~~~---   98 (113)
T 1hxv_A           28 KKLANGDIAIIDFTGIV-DNKKLASAS--AQNYELTIGSNSFIKGFETGLIAMKVNQKKTL--ALTFPSD-YHVKEL---   98 (113)
T ss_dssp             -CCCSSEEEEEEEEEEE-TTEECSTTC--CSEEEEEETSSCSCTTHHHHHHTSCSSEEEEE--CCCCCTT-SSSSGG---
T ss_pred             CCCCCCCEEEEEEEEEE-CCEEcccCC--ccCEEEEECCCChhHHHHHHHCCCCCCCEEEE--EEeCchh-hCcCCC---
Confidence            57899999999999999 999999995  48999999999999999999999999999999  885 433 887763   


Q ss_pred             CCCCeEEEEEEeccc
Q 015659          139 PPNSVVQFEVELVSW  153 (403)
Q Consensus       139 p~~~~l~~~v~l~~~  153 (403)
                       ++++++|+|+|+++
T Consensus        99 -~g~~l~F~V~l~~V  112 (113)
T 1hxv_A           99 -QSKPVTFEVVLKAI  112 (113)
T ss_dssp             -GSCCCEEEEEECCB
T ss_pred             -CCCEEEEEEEEEEE
Confidence             67999999999886

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}

Probab=99.54  E-value=1.3e-14  Score=124.37  Aligned_cols=64  Identities=20%  Similarity=0.365  Sum_probs=58.3

Q ss_pred             eEEEEeeccceEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCccc
Q 015659          214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA  278 (403)
Q Consensus       214 v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~  278 (403)
                      +||++++.||++||+| +..++|+.|.+|.++++|||+.+|.+|++||++.|.|||++|||+.+.
T Consensus        33 v~Y~g~l~dG~vfDss-~~~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~   96 (169)
T 4dt4_A           33 VHFTLKLDDGTTAEST-RNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSP   96 (169)
T ss_dssp             EEEEEEETTSCEEEEH-HHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCCCG
T ss_pred             EEEEEEECCCCEEEec-CCCCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh
Confidence            5677777889999999 666789999999999999999999999999999999999999998654

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A

Probab=99.50  E-value=3.3e-14  Score=120.65  Aligned_cols=63  Identities=29%  Similarity=0.463  Sum_probs=57.2

Q ss_pred             eEEEEeeccceEEeecCCCC-------------CCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCccc
Q 015659          214 VSYIARLEDGTVFEKKGYDG-------------EQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA  278 (403)
Q Consensus       214 v~y~g~~~~g~~fd~s~~~~-------------~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~  278 (403)
                      ++|+|++ ||++||+| +..             ++|+.|.+|.++++|||+.+|.+|++||++.|.|||++|||+.+.
T Consensus        10 v~Y~g~l-dG~vfDss-~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~Ipp~~aYG~~~~   85 (157)
T 3pr9_A           10 ISYDGYV-DGKLFDTT-NEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAFGKRDP   85 (157)
T ss_dssp             EEEEEEE-TTEEEEES-CHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEEECGGGTTCCCCG
T ss_pred             EEEEEEE-CCEEEEec-cccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEEECcHHhcCCCCh
Confidence            6788888 99999998 442             379999999999999999999999999999999999999998765

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=99.48  E-value=7e-14  Score=112.36  Aligned_cols=75  Identities=13%  Similarity=0.208  Sum_probs=65.0

Q ss_pred             eEEEEeeccceEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEc-CCCCCCCcccccCCCCCCCCCeEE
Q 015659          214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTIN-HEYGFGNVEAKRDLATIPSCAKLY  292 (403)
Q Consensus       214 v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~-~~~~yg~~~~~~~~~~ip~~~~l~  292 (403)
                      ++|+|++ ||++||++ +  ++|+.|.+|.++++|||+.+|.+|++|+++.|.|| |.. ||+.+.        ++++++
T Consensus        38 v~Y~g~~-dG~~fdss-~--~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~-Yg~~~~--------~g~~l~  104 (113)
T 1hxv_A           38 IDFTGIV-DNKKLASA-S--AQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSD-YHVKEL--------QSKPVT  104 (113)
T ss_dssp             EEEEEEE-TTEECSTT-C--CSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTT-SSSSGG--------GSCCCE
T ss_pred             EEEEEEE-CCEEcccC-C--ccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCchh-hCcCCC--------CCCEEE
Confidence            6688887 89999998 2  68999999999999999999999999999999996 443 887543        568999


Q ss_pred             EEEEEeeec
Q 015659          293 YEVEMMDFI  301 (403)
Q Consensus       293 f~iel~~i~  301 (403)
                      |+|+|++|+
T Consensus       105 F~V~l~~Vk  113 (113)
T 1hxv_A          105 FEVVLKAIK  113 (113)
T ss_dssp             EEEEECCBC
T ss_pred             EEEEEEEEC
Confidence            999999874

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A

Probab=99.45  E-value=4.9e-13  Score=120.10  Aligned_cols=63  Identities=29%  Similarity=0.463  Sum_probs=57.1

Q ss_pred             eEEEEeeccceEEeecCCCC-------------CCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCccc
Q 015659          214 VSYIARLEDGTVFEKKGYDG-------------EQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA  278 (403)
Q Consensus       214 v~y~g~~~~g~~fd~s~~~~-------------~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~  278 (403)
                      +||+|++ ||++||+| +..             +.|+.|.+|.++++|||+.+|.+|++|+++.|.|||++|||+.+.
T Consensus        10 v~Y~g~l-dG~vfDss-~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~Ippe~AYGe~~~   85 (231)
T 3prb_A           10 ISYDGYV-DGKLFDTT-NEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAFGKRDP   85 (231)
T ss_dssp             EEEEEEE-TTEEEEES-CHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEEECGGGTTCCCCG
T ss_pred             EEEEEEE-CCEEEEec-cchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEEeCcHHhcCCCCh
Confidence            7788888 99999998 432             479999999999999999999999999999999999999998763

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}

Probab=99.44  E-value=6.7e-13  Score=114.29  Aligned_cols=62  Identities=19%  Similarity=0.412  Sum_probs=56.6

Q ss_pred             eEEEEeeccceEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcc
Q 015659          214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE  277 (403)
Q Consensus       214 v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~  277 (403)
                      ++|++++.+|++||++ +. .+|+.|.+|.++++|||+.+|.+|++|+++.|.|||+.|||+.+
T Consensus        11 v~Y~g~~~dG~~fdss-~~-~~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~   72 (171)
T 2k8i_A           11 LAYQVRTEDGVLVDES-PV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD   72 (171)
T ss_dssp             EEEEEEETTSCEEEEC-CS-SSCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCC
T ss_pred             EEEEEEECCCCEEeec-cC-CcCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCCCC
Confidence            6788888899999998 43 47999999999999999999999999999999999999999874

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}

Probab=99.42  E-value=5.8e-13  Score=112.63  Aligned_cols=63  Identities=32%  Similarity=0.590  Sum_probs=56.8

Q ss_pred             eEEEEeec-cceEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCccc
Q 015659          214 VSYIARLE-DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA  278 (403)
Q Consensus       214 v~y~g~~~-~g~~fd~s~~~~~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~  278 (403)
                      +||++++. +|++||++ +. .+|+.|.+|.++++|||+.+|.+|++|+++.|.|||++|||+.+.
T Consensus        15 v~Y~g~~~~dG~~fdss-~~-~~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~~~   78 (151)
T 2kr7_A           15 IEYEVREQGSSIVLDSN-IS-KEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYES   78 (151)
T ss_dssp             EEEEEEESSCSCEEEES-TT-TCCEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCS
T ss_pred             EEEEEEECCCCCEEEeC-CC-CcCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHHHcCCCCc
Confidence            56778876 89999998 43 579999999999999999999999999999999999999998754

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1

Probab=99.41  E-value=1.8e-13  Score=115.73  Aligned_cols=64  Identities=34%  Similarity=0.609  Sum_probs=57.3

Q ss_pred             eEEEEeeccceEEeecCCC-------------CCCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCccc
Q 015659          214 VSYIARLEDGTVFEKKGYD-------------GEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA  278 (403)
Q Consensus       214 v~y~g~~~~g~~fd~s~~~-------------~~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~  278 (403)
                      +||++++.+|++||+| +.             ..+|+.|.+|.++++|||+.+|.+|++|+++.|.|||++|||+.+.
T Consensus        10 v~Y~g~~~dG~~fdss-~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ipp~~aYG~~~~   86 (151)
T 1ix5_A           10 VDYIGKLESGDVFDTS-IEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAYGNRNE   86 (151)
T ss_dssp             ECCEECCTTSCCCEES-CHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSSCSCCS
T ss_pred             EEEEEEECCCCEEEec-chhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEEECcHHHCCCCCc
Confidence            6678887889999998 43             3479999999999999999999999999999999999999998764

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}

Probab=99.39  E-value=1.4e-12  Score=114.62  Aligned_cols=63  Identities=19%  Similarity=0.406  Sum_probs=56.8

Q ss_pred             eEEEEeeccceEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCccc
Q 015659          214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA  278 (403)
Q Consensus       214 v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~  278 (403)
                      ++|++++.+|++||+| +. .+|++|.+|.++++|+|+.+|.+|++|++++|.|||++|||+.+.
T Consensus        11 v~Y~g~~~dG~~fdss-~~-~~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~   73 (196)
T 2kfw_A           11 LAYQVRTEDGVLVDES-PV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDE   73 (196)
T ss_dssp             EEEEEEETTTEEEEEC-CT-TSCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCCT
T ss_pred             EEEEEEECCCCEEEec-CC-CCCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCCh
Confidence            5677887789999998 43 479999999999999999999999999999999999999998653

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.31  E-value=6.3e-12  Score=106.85  Aligned_cols=91  Identities=21%  Similarity=0.306  Sum_probs=78.9

Q ss_pred             chHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc---CCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHH
Q 015659          311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE---DGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAI  387 (403)
Q Consensus       311 ~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~---~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai  387 (403)
                      ++|+++.+..++..|+.+|+.|+|..|+..|++|+.++..   ....+++++..+.+....+++|+|.||+++++|.+|+
T Consensus         4 ~~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~   83 (162)
T 3rkv_A            4 EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE   83 (162)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            5678899999999999999999999999999999998754   2244556777889999999999999999999999999


Q ss_pred             HHHHHHHhcccccC
Q 015659          388 ELCSKVIVEREAAR  401 (403)
Q Consensus       388 ~~~~~aL~~dp~~~  401 (403)
                      .+|++||+++|.+.
T Consensus        84 ~~~~~al~~~p~~~   97 (162)
T 3rkv_A           84 ETSSEVLKREETNE   97 (162)
T ss_dssp             HHHHHHHHHSTTCH
T ss_pred             HHHHHHHhcCCcch
Confidence            99999999999875

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*

Probab=99.26  E-value=9.7e-12  Score=105.68  Aligned_cols=58  Identities=17%  Similarity=0.376  Sum_probs=53.7

Q ss_pred             eEEEEeeccceEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCccc
Q 015659          214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA  278 (403)
Q Consensus       214 v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~  278 (403)
                      ++|+++ .||++||++ +     +.|.+|.++++|||+.+|.+|++|+++.|.|||+.|||+.+.
T Consensus        11 v~Y~g~-~dG~~fdss-~-----~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~   68 (158)
T 3cgm_A           11 IRYTLQ-VEGEVLDQG-E-----LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHDP   68 (158)
T ss_dssp             EEEEEE-ETTEEEEEE-E-----EEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTCCCCG
T ss_pred             EEEEEE-ECCEEEEee-E-----EEEEECCCCcChHHHHHHcCCCCCCEEEEEECcHHHcCCCCc
Confidence            678888 899999999 3     999999999999999999999999999999999999998754

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=99.15  E-value=6.8e-11  Score=116.98  Aligned_cols=89  Identities=21%  Similarity=0.382  Sum_probs=80.8

Q ss_pred             CCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCCCCCCCCCCCCCCC
Q 015659           60 DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLP  139 (403)
Q Consensus        60 ~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~~~ayg~~~~~~ip  139 (403)
                      ..++.||.|++||+++. ||+.|++++  +.|+.|.+|.++++|||+++|.||++|+++.|  .+|+..+||..+.    
T Consensus       156 ~~~~~gD~V~i~y~g~~-dG~~fd~~~--~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v--~v~~~~~yg~~~l----  226 (432)
T 1w26_A          156 GAVEAEDRVTIDFTGSV-DGEEFEGGK--ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTI--DVTFPEEYHAENL----  226 (432)
T ss_dssp             SCCCTTCEEEECEEEES-SSCBCSSCC--CSSEEEETTSCCSCTTHHHHSSSCCSSCEEEE--EEECCTTCSCTTT----
T ss_pred             CCCCCCCEEEEEEEEee-CCeEccCCC--ccceEEEeCCCCcchHHHHHhCCCCCCCEEEE--EECCchhhCCCCC----
Confidence            56899999999999995 999999987  48999999999999999999999999999999  9999999997763    


Q ss_pred             CCCeEEEEEEeccceeee
Q 015659          140 PNSVVQFEVELVSWITVV  157 (403)
Q Consensus       140 ~~~~l~~~v~l~~~~~~~  157 (403)
                      +|.++.|.|+|+++....
T Consensus       227 ag~~~~F~V~v~~v~~~~  244 (432)
T 1w26_A          227 KGKAAKFAINLKKVEERE  244 (432)
T ss_dssp             SSCEEEEEEECCEECCEE
T ss_pred             CCceEEEEEEEEEEeccC
Confidence            688999999999987543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.11  E-value=5.4e-10  Score=98.00  Aligned_cols=112  Identities=29%  Similarity=0.319  Sum_probs=85.1

Q ss_pred             eEEEEEEEeeeccCcCccccCchHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChH-HHHHHHHHHHH
Q 015659          290 KLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDD-EQKLVKSLRVS  368 (403)
Q Consensus       290 ~l~f~iel~~i~~~~~~~~m~~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~-~~~~~~~~~~~  368 (403)
                      .......+..+++.++.|.|+.+++...+..+...|+.+|+.|+|.+|+..|++|+.+....+..... .......+...
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~   89 (198)
T 2fbn_A           10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS   89 (198)
T ss_dssp             ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence            34445567788899999999999999999999999999999999999999999999986554322222 22233555678


Q ss_pred             hhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          369 CWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       369 ~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      ++.|+|.|++++++|.+|+.+|+++|+++|.+.
T Consensus        90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  122 (198)
T 2fbn_A           90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNV  122 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccH
Confidence            999999999999999999999999999998764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.08  E-value=2e-10  Score=93.94  Aligned_cols=73  Identities=25%  Similarity=0.420  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHH
Q 015659          314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV  393 (403)
Q Consensus       314 ~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~a  393 (403)
                      ..+.+...++.||.+|+.|+|++|+..|++|+.+-               +....+++|+|.||+++++|++|+.+|+++
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~---------------p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a   68 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD---------------PSNITFYNNKAAVYFEEKKFAECVQFCEKA   68 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------CCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence            35678888999999999999999999999999972               223568999999999999999999999999


Q ss_pred             HhcccccC
Q 015659          394 IVEREAAR  401 (403)
Q Consensus       394 L~~dp~~~  401 (403)
                      |+++|.+.
T Consensus        69 l~~~~~~~   76 (127)
T 4gcn_A           69 VEVGRETR   76 (127)
T ss_dssp             HHHHHHTT
T ss_pred             HHhCcccc
Confidence            99999764

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.05  E-value=2.7e-10  Score=93.09  Aligned_cols=68  Identities=34%  Similarity=0.506  Sum_probs=45.5

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      .+...+++||.+|+.|+|.+|+..|++|+++-..               ...++.|+|.|++++++|.+|+.++++||++
T Consensus        12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~   76 (126)
T 4gco_A           12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE---------------NAILYSNRAACLTKLMEFQRALDDCDTCIRL   76 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHh
Confidence            6788899999999999999999999999997211               1234444444444444444444444444444


Q ss_pred             ccc
Q 015659          397 REA  399 (403)
Q Consensus       397 dp~  399 (403)
                      +|.
T Consensus        77 ~p~   79 (126)
T 4gco_A           77 DSK   79 (126)
T ss_dssp             CTT
T ss_pred             hhh
Confidence            444

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.05  E-value=4.9e-10  Score=95.06  Aligned_cols=85  Identities=12%  Similarity=0.115  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHH
Q 015659          314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV  393 (403)
Q Consensus       314 ~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~a  393 (403)
                      ....+..++..||.+|+.|+|+.|+.+|++||.+....+...   .....+....+|+|++.|+.++++|++|+.+|++|
T Consensus         7 ~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~---a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kA   83 (159)
T 2hr2_A            7 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE---AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA   83 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS---CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh---hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            366888999999999999999999999999999865532211   11123445569999999999999999999999999


Q ss_pred             Hhc-------ccccC
Q 015659          394 IVE-------REAAR  401 (403)
Q Consensus       394 L~~-------dp~~~  401 (403)
                      |++       +|.++
T Consensus        84 L~l~n~~~e~~pd~~   98 (159)
T 2hr2_A           84 LHYFNRRGELNQDEG   98 (159)
T ss_dssp             HHHHHHHCCTTSTHH
T ss_pred             HHhhhccccCCCchH
Confidence            999       99764

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=98.97  E-value=4e-10  Score=110.04  Aligned_cols=91  Identities=22%  Similarity=0.469  Sum_probs=76.1

Q ss_pred             CCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCCCCCCCCCCCCCCC
Q 015659           60 DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLP  139 (403)
Q Consensus        60 ~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~~~ayg~~~~~~ip  139 (403)
                      ..++.||.|++||+++. ||+.|+++.  +.|+.|.+|.++++|||+++|.||++|+++.|++.+|.  .||..+    .
T Consensus       159 ~~~~~gD~V~i~y~g~~-dG~~fd~~~--~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~--dy~~~~----l  229 (392)
T 1t11_A          159 EAAENGKRVSIDFVGSI-DGVEFEGGK--AENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPE--DYHAEN----L  229 (392)
T ss_dssp             CCCCTTCEEEEEEEEES-SSSCCTTCE--EEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCT--TCSCTT----T
T ss_pred             CCCCCCCEEEEEEEEEE-CCEEccCCC--ccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCcc--ccccCC----C
Confidence            46899999999999994 999999984  47999999999999999999999999999999444454  466554    2


Q ss_pred             CCCeEEEEEEeccceeeecc
Q 015659          140 PNSVVQFEVELVSWITVVDL  159 (403)
Q Consensus       140 ~~~~l~~~v~l~~~~~~~dv  159 (403)
                      +|.++.|+|+|+.+....-.
T Consensus       230 aGk~~~F~V~v~~i~~~~lp  249 (392)
T 1t11_A          230 KGKAAKFAIKVNKVEARELP  249 (392)
T ss_dssp             SSCEEEECCCEEEEEEEECC
T ss_pred             CCCeEEEEEEEEEEEcCCCC
Confidence            78999999999998754433

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=98.94  E-value=1.4e-09  Score=107.46  Aligned_cols=77  Identities=10%  Similarity=0.194  Sum_probs=68.3

Q ss_pred             eEEEEeeccceEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEE
Q 015659          214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYY  293 (403)
Q Consensus       214 v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f  293 (403)
                      +||+|+. ||+.|+++ +  +.|+.|.+|.+.++|||+.+|.+|++|+++.|.+|+..+||..+.        +|.+++|
T Consensus       166 i~y~g~~-dG~~fd~~-~--~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~l--------ag~~~~F  233 (432)
T 1w26_A          166 IDFTGSV-DGEEFEGG-K--ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENL--------KGKAAKF  233 (432)
T ss_dssp             ECEEEES-SSCBCSSC-C--CSSEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTTT--------SSCEEEE
T ss_pred             EEEEEee-CCeEccCC-C--ccceEEEeCCCCcchHHHHHhCCCCCCCEEEEEECCchhhCCCCC--------CCceEEE
Confidence            5677774 88999988 3  689999999999999999999999999999999999999997443        5789999


Q ss_pred             EEEEeeecc
Q 015659          294 EVEMMDFIK  302 (403)
Q Consensus       294 ~iel~~i~~  302 (403)
                      +|+|+++..
T Consensus       234 ~V~v~~v~~  242 (432)
T 1w26_A          234 AINLKKVEE  242 (432)
T ss_dssp             EEECCEECC
T ss_pred             EEEEEEEec
Confidence            999999975

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.79  E-value=1.1e-08  Score=99.54  Aligned_cols=92  Identities=28%  Similarity=0.433  Sum_probs=77.9

Q ss_pred             CchHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHH
Q 015659          310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-SFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIE  388 (403)
Q Consensus       310 ~~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~  388 (403)
                      +.++.+..+..++..|+.+|+.|+|++|+..|++|++++.... ....++...+.+....+++|+|.||+++++|++|+.
T Consensus       215 ~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~  294 (370)
T 1ihg_A          215 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD  294 (370)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence            4678899999999999999999999999999999999764421 112233344678888999999999999999999999


Q ss_pred             HHHHHHhcccccC
Q 015659          389 LCSKVIVEREAAR  401 (403)
Q Consensus       389 ~~~~aL~~dp~~~  401 (403)
                      +|++||+++|.++
T Consensus       295 ~~~~al~~~p~~~  307 (370)
T 1ihg_A          295 SCLEALEIDPSNT  307 (370)
T ss_dssp             HHHHHHTTCTTCH
T ss_pred             HHHHHHHhCchhH
Confidence            9999999999764

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.69  E-value=3e-08  Score=79.85  Aligned_cols=70  Identities=26%  Similarity=0.318  Sum_probs=55.3

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      .+..+...|+.+|+.|+|.+|+..|++|+.+-..               ...++.|+|.|++++++|.+|+.+++++|++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   67 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE---------------DARGYSNRAAALAKLMSFPEAIADCNKAIEK   67 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---------------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            4677889999999999999999999999997221               2357777777777777777777777777777


Q ss_pred             ccccC
Q 015659          397 REAAR  401 (403)
Q Consensus       397 dp~~~  401 (403)
                      +|.+.
T Consensus        68 ~p~~~   72 (126)
T 3upv_A           68 DPNFV   72 (126)
T ss_dssp             CTTCH
T ss_pred             CCCcH
Confidence            77653

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=98.66  E-value=7.9e-09  Score=100.83  Aligned_cols=77  Identities=9%  Similarity=0.195  Sum_probs=64.8

Q ss_pred             eEEEEeeccceEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEE
Q 015659          214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYY  293 (403)
Q Consensus       214 v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f  293 (403)
                      +||+|+. ||+.|+++   .+.|+.|.+|.+.++|||+.+|.+|++|++..|.++....||..+        .+|.+++|
T Consensus       169 i~y~g~~-dG~~fd~~---~~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~--------laGk~~~F  236 (392)
T 1t11_A          169 IDFVGSI-DGVEFEGG---KAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAEN--------LKGKAAKF  236 (392)
T ss_dssp             EEEEEES-SSSCCTTC---EEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTT--------TSSCEEEE
T ss_pred             EEEEEEE-CCEEccCC---CccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCccccccCC--------CCCCeEEE
Confidence            5566763 78888876   367999999999999999999999999999999997555677533        26789999


Q ss_pred             EEEEeeecc
Q 015659          294 EVEMMDFIK  302 (403)
Q Consensus       294 ~iel~~i~~  302 (403)
                      +|+|++|..
T Consensus       237 ~V~v~~i~~  245 (392)
T 1t11_A          237 AIKVNKVEA  245 (392)
T ss_dssp             CCCEEEEEE
T ss_pred             EEEEEEEEc
Confidence            999999985

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.63  E-value=6.4e-08  Score=75.43  Aligned_cols=69  Identities=29%  Similarity=0.463  Sum_probs=61.0

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      .+..+...|+.+++.|+|.+|+..|++|+.+-..               ...++.|+|.|++++++|.+|+..++++|++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ---------------NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            3566788999999999999999999999997221               2457899999999999999999999999999


Q ss_pred             cccc
Q 015659          397 REAA  400 (403)
Q Consensus       397 dp~~  400 (403)
                      +|.+
T Consensus        68 ~p~~   71 (111)
T 2l6j_A           68 TSTA   71 (111)
T ss_dssp             CSST
T ss_pred             CCCc
Confidence            9987

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.47  E-value=5e-07  Score=76.46  Aligned_cols=82  Identities=21%  Similarity=0.121  Sum_probs=64.6

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      +...-.+|..+.+.|+|++|+..|.+||.+++.....+++.    -...++.++|++.|+.++++|++|+.++++||+++
T Consensus        57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~----~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~  132 (159)
T 2hr2_A           57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE----GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI  132 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCch----HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            34677889999999999999999999999743322222221    11223344999999999999999999999999999


Q ss_pred             cccCCC
Q 015659          398 EAARGV  403 (403)
Q Consensus       398 p~~~~~  403 (403)
                      |.++++
T Consensus       133 p~d~~~  138 (159)
T 2hr2_A          133 EERKGE  138 (159)
T ss_dssp             HHCCSC
T ss_pred             CCcHHH
Confidence            999875

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.47  E-value=2.8e-07  Score=77.69  Aligned_cols=70  Identities=13%  Similarity=0.060  Sum_probs=50.0

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      .+..+...|..+|+.|+|.+|+..|++++.+               .+....++.|++.|+.++++|++|+..+++|+++
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---------------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l   99 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---------------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL   99 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence            3456677888889999999999999998886               1122346667777777777777777777777777


Q ss_pred             ccccC
Q 015659          397 REAAR  401 (403)
Q Consensus       397 dp~~~  401 (403)
                      +|.+.
T Consensus       100 ~P~~~  104 (151)
T 3gyz_A          100 GKNDY  104 (151)
T ss_dssp             SSSCC
T ss_pred             CCCCc
Confidence            76654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.46  E-value=2.7e-07  Score=75.00  Aligned_cols=68  Identities=13%  Similarity=0.171  Sum_probs=60.1

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp  398 (403)
                      ..+...|..+++.|+|.+|+..|++|+++               ++....++.|+|.|++++++|++|+.+++++|+++|
T Consensus        48 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~---------------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P  112 (126)
T 4gco_A           48 ILYSNRAACLTKLMEFQRALDDCDTCIRL---------------DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDP  112 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHhhHHHhhccHHHHHHHHHHHHHh---------------hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence            34567899999999999999999999997               222356899999999999999999999999999999


Q ss_pred             ccC
Q 015659          399 AAR  401 (403)
Q Consensus       399 ~~~  401 (403)
                      .|.
T Consensus       113 ~~~  115 (126)
T 4gco_A          113 SNE  115 (126)
T ss_dssp             TCH
T ss_pred             CCH
Confidence            885

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.46  E-value=2.9e-07  Score=77.75  Aligned_cols=69  Identities=20%  Similarity=0.151  Sum_probs=44.7

Q ss_pred             HHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIV  395 (403)
Q Consensus       316 ~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~  395 (403)
                      ..+..+...|+.+|+.|+|.+|+..|++|+.+-..               ...++.|+|.||+++++|.+|+.+++++|+
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   73 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA---------------NPIYLSNRAAAYSASGQHEKAAEDAELATV   73 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            46777888999999999999999999999986321               123444444444444444444444444444


Q ss_pred             cccc
Q 015659          396 EREA  399 (403)
Q Consensus       396 ~dp~  399 (403)
                      ++|.
T Consensus        74 ~~p~   77 (164)
T 3sz7_A           74 VDPK   77 (164)
T ss_dssp             HCTT
T ss_pred             hCCC
Confidence            4444

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.34  E-value=6e-07  Score=68.74  Aligned_cols=65  Identities=15%  Similarity=0.097  Sum_probs=57.1

Q ss_pred             HHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHH-hhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVS-CWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       322 k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~-~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      -..|..+++.|+|.+|+..|++++..-..               ... ++.|+|.|++++++|.+|+..+.++|+++|.+
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   68 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPV---------------GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS   68 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSS---------------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence            45789999999999999999999997211               234 88999999999999999999999999999987


Q ss_pred             C
Q 015659          401 R  401 (403)
Q Consensus       401 ~  401 (403)
                      .
T Consensus        69 ~   69 (99)
T 2kc7_A           69 P   69 (99)
T ss_dssp             T
T ss_pred             H
Confidence            5

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.30  E-value=7.5e-07  Score=76.27  Aligned_cols=67  Identities=12%  Similarity=0.051  Sum_probs=58.6

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      .....|..+++.|+|++|+..|++++++-               +....++.|+|.||.+++++++|+..+++||+++|.
T Consensus       109 ~~~~lg~~~~~~g~~~~A~~~~~~~l~~~---------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  173 (184)
T 3vtx_A          109 AYYKLGLVYDSMGEHDKAIEAYEKTISIK---------------PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK  173 (184)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHhCCchhHHHHHHHHHHhc---------------chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence            34567999999999999999999999972               223468999999999999999999999999999998


Q ss_pred             cC
Q 015659          400 AR  401 (403)
Q Consensus       400 ~~  401 (403)
                      |+
T Consensus       174 ~a  175 (184)
T 3vtx_A          174 KA  175 (184)
T ss_dssp             HH
T ss_pred             CH
Confidence            75

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.28  E-value=1.3e-06  Score=70.70  Aligned_cols=67  Identities=28%  Similarity=0.393  Sum_probs=42.1

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      +..+...|+.+|+.|+|..|+..|++++..-..               ...++.|+|.|++++++|.+|+..++++|+++
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~   73 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---------------VAVYYTNRALCYLKMQQPEQALADCRRALELD   73 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC---------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            456677888889999999999999998886221               12344455555555555555555555555544


Q ss_pred             cc
Q 015659          398 EA  399 (403)
Q Consensus       398 p~  399 (403)
                      |.
T Consensus        74 p~   75 (137)
T 3q49_B           74 GQ   75 (137)
T ss_dssp             TT
T ss_pred             ch
Confidence            44

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.28  E-value=3.5e-06  Score=65.91  Aligned_cols=75  Identities=15%  Similarity=0.073  Sum_probs=62.2

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp  398 (403)
                      ...-..|+.+|+.++|..|+.-|++|++.........        .....++.|+|.|+.+++++..|+...+++|+++|
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~--------~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P   77 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEIST--------IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP   77 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS--------SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCc--------ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence            3455789999999999999999999999875432111        12345889999999999999999999999999999


Q ss_pred             ccC
Q 015659          399 AAR  401 (403)
Q Consensus       399 ~~~  401 (403)
                      .+.
T Consensus        78 ~~~   80 (104)
T 2v5f_A           78 EHQ   80 (104)
T ss_dssp             TCH
T ss_pred             CCH
Confidence            874

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.28  E-value=1.2e-06  Score=73.25  Aligned_cols=67  Identities=9%  Similarity=-0.006  Sum_probs=52.9

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      ..-..|+-+|+.|+|++|+..|++|+++-               +....++.|++.||.++++|++|+.+++++|+++|.
T Consensus        33 ~~~~la~~y~~~~~~~~A~~~~~~al~~~---------------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~   97 (150)
T 4ga2_A           33 KGFYFAKLYYEAKEYDLAKKYICTYINVQ---------------ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT   97 (150)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC
Confidence            34467889999999999999999999972               222457788888888888888888888888888887


Q ss_pred             cC
Q 015659          400 AR  401 (403)
Q Consensus       400 ~~  401 (403)
                      +.
T Consensus        98 ~~   99 (150)
T 4ga2_A           98 QK   99 (150)
T ss_dssp             CH
T ss_pred             CH
Confidence            64

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.27  E-value=1.6e-06  Score=72.35  Aligned_cols=30  Identities=13%  Similarity=0.101  Sum_probs=22.7

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADC  347 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~  347 (403)
                      +..+...|..+++.|+|.+|+..|++++..
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~   50 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL   50 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Confidence            444566788888888888888888888875

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.26  E-value=1.2e-06  Score=67.76  Aligned_cols=68  Identities=12%  Similarity=0.041  Sum_probs=58.6

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp  398 (403)
                      ......|..+++.|+|.+|+..|++|+++-.               ....++.|+|.||.++++|++|+..++++|++.|
T Consensus         8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~   72 (100)
T 3ma5_A            8 FTRYALAQEHLKHDNASRALALFEELVETDP---------------DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR   72 (100)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---------------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence            3456789999999999999999999999722               1234899999999999999999999999999988


Q ss_pred             ccC
Q 015659          399 AAR  401 (403)
Q Consensus       399 ~~~  401 (403)
                      .+.
T Consensus        73 ~~~   75 (100)
T 3ma5_A           73 EEG   75 (100)
T ss_dssp             HHS
T ss_pred             cCC
Confidence            654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.26  E-value=2.2e-06  Score=63.89  Aligned_cols=69  Identities=28%  Similarity=0.381  Sum_probs=59.4

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      +..+...|..+++.++|.+|+..|++++..-..               ...++.|+|.|+++++++++|+..++++++++
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~   73 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---------------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD   73 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---------------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            455667899999999999999999999997211               13478899999999999999999999999999


Q ss_pred             cccC
Q 015659          398 EAAR  401 (403)
Q Consensus       398 p~~~  401 (403)
                      |.+.
T Consensus        74 p~~~   77 (91)
T 1na3_A           74 PNNA   77 (91)
T ss_dssp             TTCH
T ss_pred             CCCH
Confidence            9764

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.23  E-value=2.2e-06  Score=70.53  Aligned_cols=30  Identities=17%  Similarity=0.187  Sum_probs=22.1

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADC  347 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~  347 (403)
                      ...+...|..+++.|+|.+|+..|++++..
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~   47 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCML   47 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence            344556777788888888888888888775

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.20  E-value=3.6e-06  Score=70.02  Aligned_cols=74  Identities=23%  Similarity=0.271  Sum_probs=49.7

Q ss_pred             chHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHH
Q 015659          311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELC  390 (403)
Q Consensus       311 ~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~  390 (403)
                      ..+....+..+...|+.++..|+|.+|+..|++++......               ..++.|+|.|++++++|.+|+..+
T Consensus         6 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~   70 (166)
T 1a17_A            6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---------------AIYYGNRSLAYLRTECYGYALGDA   70 (166)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHcCCHHHHHHHH
Confidence            45678889999999999999999999999999999863211               224444444444444444444444


Q ss_pred             HHHHhcccc
Q 015659          391 SKVIVEREA  399 (403)
Q Consensus       391 ~~aL~~dp~  399 (403)
                      +++++++|.
T Consensus        71 ~~a~~~~~~   79 (166)
T 1a17_A           71 TRAIELDKK   79 (166)
T ss_dssp             HHHHHHCTT
T ss_pred             HHHHHhCcc
Confidence            444444443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.20  E-value=2.3e-06  Score=71.88  Aligned_cols=69  Identities=10%  Similarity=0.014  Sum_probs=61.2

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      +..+...|..+++.|+|..|+..|++|+.+               .+....+++++|.||+++++|.+|+.+++++|+++
T Consensus        63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~---------------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  127 (162)
T 3rkv_A           63 IPLYANMSQCYLNIGDLHEAEETSSEVLKR---------------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH  127 (162)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc---------------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence            445677899999999999999999999997               22235699999999999999999999999999999


Q ss_pred             cccC
Q 015659          398 EAAR  401 (403)
Q Consensus       398 p~~~  401 (403)
                      |.|.
T Consensus       128 p~~~  131 (162)
T 3rkv_A          128 PAAA  131 (162)
T ss_dssp             GGGH
T ss_pred             CCCH
Confidence            9875

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.19  E-value=1.6e-06  Score=73.03  Aligned_cols=66  Identities=17%  Similarity=0.128  Sum_probs=57.7

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      .+...|..+++.|+|.+|+..|++|+.+-..               ....++|++.||+++|++++|+..+++||+++|.
T Consensus        72 ~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~---------------~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~  136 (151)
T 3gyz_A           72 YIMGLAAIYQIKEQFQQAADLYAVAFALGKN---------------DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND  136 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS---------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHhhCCC---------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            3456799999999999999999999997222               2358999999999999999999999999999986


Q ss_pred             c
Q 015659          400 A  400 (403)
Q Consensus       400 ~  400 (403)
                      +
T Consensus       137 ~  137 (151)
T 3gyz_A          137 E  137 (151)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.19  E-value=1.8e-06  Score=80.11  Aligned_cols=69  Identities=28%  Similarity=0.377  Sum_probs=53.9

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      +..++..|+.+|+.|+|.+|+..|++|+..-..               ...+++|+|.||+++++|++|+.++++||+++
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~   68 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---------------VAVYYTNRALCYLKMQQPEQALADCRRALELD   68 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            456788999999999999999999999997221               23467777777777777777777777777777


Q ss_pred             cccC
Q 015659          398 EAAR  401 (403)
Q Consensus       398 p~~~  401 (403)
                      |.+.
T Consensus        69 p~~~   72 (281)
T 2c2l_A           69 GQSV   72 (281)
T ss_dssp             TTCH
T ss_pred             CCCH
Confidence            7653

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.18  E-value=3.2e-06  Score=67.05  Aligned_cols=70  Identities=19%  Similarity=0.186  Sum_probs=60.6

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      .+..+...|..+++.|+|.+|+..|++|+++-..               ...++.|+|.|+.+++++++|+..+.++|+.
T Consensus        26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   90 (117)
T 3k9i_A           26 LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN---------------HQALRVFYAMVLYNLGRYEQGVELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3455677899999999999999999999997221               2458899999999999999999999999999


Q ss_pred             ccccC
Q 015659          397 REAAR  401 (403)
Q Consensus       397 dp~~~  401 (403)
                      +|.+.
T Consensus        91 ~p~~~   95 (117)
T 3k9i_A           91 TSDDE   95 (117)
T ss_dssp             HCCCH
T ss_pred             CCCcH
Confidence            99764

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.14  E-value=3.2e-06  Score=67.95  Aligned_cols=27  Identities=19%  Similarity=0.225  Sum_probs=21.8

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADC  347 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~  347 (403)
                      .-..|..+++.|+|.+|+..|++|+..
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~   46 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQK   46 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            455678888888888888888888886

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.13  E-value=4.2e-06  Score=70.47  Aligned_cols=68  Identities=18%  Similarity=0.188  Sum_probs=60.0

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      .+...|..+++.|+|.+|+..|++|+.+-               +....++.|+|.|++++++|.+|+.+++++|+++|.
T Consensus        47 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  111 (164)
T 3sz7_A           47 YLSNRAAAYSASGQHEKAAEDAELATVVD---------------PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN  111 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            45678999999999999999999999972               123568999999999999999999999999999998


Q ss_pred             cCC
Q 015659          400 ARG  402 (403)
Q Consensus       400 ~~~  402 (403)
                      +..
T Consensus       112 ~~~  114 (164)
T 3sz7_A          112 GGS  114 (164)
T ss_dssp             SCC
T ss_pred             chH
Confidence            864

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.12  E-value=7.6e-06  Score=66.60  Aligned_cols=72  Identities=33%  Similarity=0.397  Sum_probs=52.7

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      .+..+...|..+++.|+|..|+..|+++++....            ......++.|+|.|++++++|.+|+..+++++++
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   94 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT------------PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK   94 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc------------chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence            3566778899999999999999999999886221            1223456777777777777777777777777777


Q ss_pred             cccc
Q 015659          397 REAA  400 (403)
Q Consensus       397 dp~~  400 (403)
                      +|.+
T Consensus        95 ~~~~   98 (148)
T 2dba_A           95 DGGD   98 (148)
T ss_dssp             TSCC
T ss_pred             CccC
Confidence            6654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.11  E-value=4.5e-06  Score=64.80  Aligned_cols=83  Identities=16%  Similarity=0.103  Sum_probs=44.1

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCC-------------ChHHH---H---HHHHHHHHhhhHHHHHHH
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF-------------VDDEQ---K---LVKSLRVSCWLNSAACCL  378 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~-------------~~~~~---~---~~~~~~~~~~~N~a~c~l  378 (403)
                      +..+...|..++..|+|..|+..|++++.........             .++-.   .   ...+....++.|+|.|+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            4556666777777777777777777777652111000             00000   0   001112335566666666


Q ss_pred             HccCHHHHHHHHHHHHhccccc
Q 015659          379 KLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       379 kl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      +++++.+|+..+.++++++|.+
T Consensus        84 ~~~~~~~A~~~~~~~~~~~~~~  105 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKHEANN  105 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTC
T ss_pred             HHhhHHHHHHHHHHHHHcCCCC
Confidence            6666666666666666666654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.07  E-value=1.4e-05  Score=64.57  Aligned_cols=73  Identities=14%  Similarity=0.121  Sum_probs=60.9

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp  398 (403)
                      ..+...|..+++.|+|.+|+..|++|+.+-..... .       ......++.|++.|+.++++|.+|+..+.++|+.+|
T Consensus        43 ~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~-~-------~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~  114 (127)
T 4gcn_A           43 TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA-D-------YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR  114 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch-h-------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence            34667899999999999999999999997433211 1       334567999999999999999999999999999887


Q ss_pred             c
Q 015659          399 A  399 (403)
Q Consensus       399 ~  399 (403)
                      .
T Consensus       115 ~  115 (127)
T 4gcn_A          115 D  115 (127)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.06  E-value=5.1e-06  Score=69.27  Aligned_cols=66  Identities=15%  Similarity=-0.006  Sum_probs=57.6

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      +...|..+++.|+|.+|+..|++|+.+-..               ...+++|+|.|++++|++.+|+..++++|+++|.+
T Consensus        58 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  122 (148)
T 2vgx_A           58 FLGLGACRQAMGQYDLAIHSYSYGAVMDIX---------------EPRFPFHAAECLLQXGELAEAESGLFLAQELIANX  122 (148)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---------------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            456789999999999999999999997221               23478999999999999999999999999999976


Q ss_pred             C
Q 015659          401 R  401 (403)
Q Consensus       401 ~  401 (403)
                      .
T Consensus       123 ~  123 (148)
T 2vgx_A          123 P  123 (148)
T ss_dssp             G
T ss_pred             C
Confidence            5

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.06  E-value=4.8e-06  Score=66.84  Aligned_cols=68  Identities=12%  Similarity=-0.051  Sum_probs=53.4

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      .+...|..++..|++.+|+..|++|+.+-               +-....+.|+|.|+.+++++.+|+..++++|+++|.
T Consensus        53 a~~~lg~~~~~~g~~~~A~~~~~~al~l~---------------P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~  117 (121)
T 1hxi_A           53 AWRSLGLTQAENEKDGLAIIALNHARMLD---------------PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ  117 (121)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            34567999999999999999999999972               222458899999999999999999999999999998


Q ss_pred             cCC
Q 015659          400 ARG  402 (403)
Q Consensus       400 ~~~  402 (403)
                      ++.
T Consensus       118 ~~~  120 (121)
T 1hxi_A          118 YEQ  120 (121)
T ss_dssp             ---
T ss_pred             CCC
Confidence            764

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.05  E-value=6.8e-06  Score=65.70  Aligned_cols=64  Identities=19%  Similarity=0.169  Sum_probs=56.7

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      ..+...|..+++.|+|.+|+..|++|+.+-               +....++.|+|.|++++++|.+|+..++++|+++
T Consensus        39 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           39 RGYSNRAAALAKLMSFPEAIADCNKAIEKD---------------PNFVRAYIRKATAQIAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---------------CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence            445678999999999999999999999972               1225689999999999999999999999999999

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.03  E-value=6.3e-06  Score=67.75  Aligned_cols=66  Identities=23%  Similarity=0.126  Sum_probs=57.5

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      +...|..+++.|+|.+|+..|++|+.+-..               ....++|++.|++++++|.+|+..++++|+++|.+
T Consensus        55 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  119 (142)
T 2xcb_A           55 FLGLGACRQSLGLYEQALQSYSYGALMDIN---------------EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ  119 (142)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            456789999999999999999999997221               23478999999999999999999999999999976


Q ss_pred             C
Q 015659          401 R  401 (403)
Q Consensus       401 ~  401 (403)
                      .
T Consensus       120 ~  120 (142)
T 2xcb_A          120 P  120 (142)
T ss_dssp             G
T ss_pred             c
Confidence            5

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.00  E-value=1.6e-05  Score=69.95  Aligned_cols=79  Identities=9%  Similarity=0.052  Sum_probs=59.3

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHH------HHHHHHHhhhHHHHHHHHccCHHHHHHHHH
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKL------VKSLRVSCWLNSAACCLKLKDYQGAIELCS  391 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~------~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~  391 (403)
                      +..+...|..+++.|+|.+|+..|++++..-...     .+...      .......+++|+|.|++++++|++|+..++
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~   78 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR-----TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK   78 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH-----HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            4567788999999999999999999999972110     00000      011223344559999999999999999999


Q ss_pred             HHHhcccccC
Q 015659          392 KVIVEREAAR  401 (403)
Q Consensus       392 ~aL~~dp~~~  401 (403)
                      ++|+++|.+.
T Consensus        79 ~al~~~p~~~   88 (208)
T 3urz_A           79 ELLQKAPNNV   88 (208)
T ss_dssp             HHHHHCTTCH
T ss_pred             HHHHHCCCCH
Confidence            9999999874

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.99  E-value=1.1e-05  Score=63.83  Aligned_cols=69  Identities=30%  Similarity=0.401  Sum_probs=60.4

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      .+..+...|..++..|+|..|+..|++++.....               ...++.|+|.|++++++|.+|+..+++++++
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   67 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT---------------NMTYITNQAAVYFEKGDYNKCRELCEKAIEV   67 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence            4567788999999999999999999999997321               1458899999999999999999999999999


Q ss_pred             cccc
Q 015659          397 REAA  400 (403)
Q Consensus       397 dp~~  400 (403)
                      +|.+
T Consensus        68 ~~~~   71 (131)
T 1elr_A           68 GREN   71 (131)
T ss_dssp             HHHS
T ss_pred             cccc
Confidence            9865

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.99  E-value=1.6e-05  Score=62.74  Aligned_cols=88  Identities=17%  Similarity=0.127  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCC-------------CCChHHHH------HHHHHHHHhhhHH
Q 015659          313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-------------SFVDDEQK------LVKSLRVSCWLNS  373 (403)
Q Consensus       313 e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-------------~~~~~~~~------~~~~~~~~~~~N~  373 (403)
                      .....+..+...|..++..++|..|+..|++++.......             +..++-..      ...+....++.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~   86 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM   86 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence            3445566677778888888888888888888877521100             00000000      0011123355666


Q ss_pred             HHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          374 AACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       374 a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      |.|+.++++|.+|+..+.++++++|.+
T Consensus        87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~  113 (131)
T 2vyi_A           87 GLALSSLNKHVEAVAYYKKALELDPDN  113 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCccc
Confidence            666666666666666666666666644

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.99  E-value=9.1e-06  Score=71.57  Aligned_cols=64  Identities=17%  Similarity=0.142  Sum_probs=57.6

Q ss_pred             HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      ..|..+++.|+|.+|+..|++++.+-               +-...++.|+|.|++++++|.+|+..++++|+++|.|+
T Consensus        59 ~lg~~~~~~g~~~~A~~~~~~al~~~---------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~  122 (208)
T 3urz_A           59 ELALAYKKNRNYDKAYLFYKELLQKA---------------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL  122 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence            48999999999999999999999972               22356899999999999999999999999999999875

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.99  E-value=4.9e-06  Score=83.16  Aligned_cols=81  Identities=20%  Similarity=0.238  Sum_probs=71.0

Q ss_pred             ccccCchHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHH
Q 015659          306 PWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQG  385 (403)
Q Consensus       306 ~~~m~~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~  385 (403)
                      ...++.+++...+..+...|+.+|+.|+|.+|+..|++++..-.               ....+++|+|.|++++++|.+
T Consensus        13 ~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~la~~~~~~g~~~~   77 (537)
T 3fp2_A           13 LKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP---------------NEPVFYSNISACYISTGDLEK   77 (537)
T ss_dssp             HTTSCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHHTCHHH
T ss_pred             hcCCCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC---------------CCcHHHHHHHHHHHHcCCHHH
Confidence            45678888999999999999999999999999999999999721               124689999999999999999


Q ss_pred             HHHHHHHHHhcccccC
Q 015659          386 AIELCSKVIVEREAAR  401 (403)
Q Consensus       386 ai~~~~~aL~~dp~~~  401 (403)
                      |+..++++|+++|.+.
T Consensus        78 A~~~~~~al~~~p~~~   93 (537)
T 3fp2_A           78 VIEFTTKALEIKPDHS   93 (537)
T ss_dssp             HHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHhcCCchH
Confidence            9999999999999864

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.96  E-value=4.5e-06  Score=70.46  Aligned_cols=67  Identities=10%  Similarity=0.143  Sum_probs=55.6

Q ss_pred             HHHHHhhHhhhcCcH----------HHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc--------
Q 015659          320 RKKEEGNLLFKNGKY----------ERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK--------  381 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~----------~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~--------  381 (403)
                      .+...|+.+...++|          ++|+..|++||++               ++....+++|++.+|.+++        
T Consensus        38 a~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---------------dP~~~~A~~~LG~ay~~lg~l~P~~~~  102 (158)
T 1zu2_A           38 NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---------------DPKKDEAVWCIGNAYTSFAFLTPDETE  102 (158)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred             HHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---------------CcCcHHHHHHHHHHHHHhcccCcchhh
Confidence            345678877777665          5999999999997               3334668999999999985        


Q ss_pred             ---CHHHHHHHHHHHHhcccccC
Q 015659          382 ---DYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       382 ---~~~~ai~~~~~aL~~dp~~~  401 (403)
                         +|++|+.++.+||+++|.|.
T Consensus       103 a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A          103 AKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             hhccHHHHHHHHHHHHHhCCCCH
Confidence               89999999999999999873

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.94  E-value=1.3e-05  Score=62.95  Aligned_cols=68  Identities=12%  Similarity=0.043  Sum_probs=58.2

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp  398 (403)
                      ..+...|..+++.|+|.+|+..|++++.+-.               .....+.|+|.|+.+++++.+|+..+.++++++|
T Consensus        20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~   84 (115)
T 2kat_A           20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDP---------------TYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ   84 (115)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHCC---------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            3456789999999999999999999999721               1245789999999999999999999999999998


Q ss_pred             ccC
Q 015659          399 AAR  401 (403)
Q Consensus       399 ~~~  401 (403)
                      .+.
T Consensus        85 ~~~   87 (115)
T 2kat_A           85 SRG   87 (115)
T ss_dssp             HHT
T ss_pred             ccc
Confidence            653

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.93  E-value=7.7e-06  Score=65.13  Aligned_cols=84  Identities=24%  Similarity=0.334  Sum_probs=50.9

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCC-----------CCC--hHHHH------HHHHHHHHhhhHHHHHHH
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-----------SFV--DDEQK------LVKSLRVSCWLNSAACCL  378 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-----------~~~--~~~~~------~~~~~~~~~~~N~a~c~l  378 (403)
                      +..+...|+.+++.|+|.+|+..|++++.......           ...  ++-..      .+.+....++.|+|.|++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~   95 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE   95 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            44555667777777777777777777766421100           000  00000      011223457788888888


Q ss_pred             HccCHHHHHHHHHHHHhcccccC
Q 015659          379 KLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       379 kl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      ++++|.+|+..++++++++|.+.
T Consensus        96 ~~~~~~~A~~~~~~~~~~~p~~~  118 (133)
T 2lni_A           96 AMKDYTKAMDVYQKALDLDSSCK  118 (133)
T ss_dssp             HTTCHHHHHHHHHHHHHHCGGGT
T ss_pred             HHhhHHHHHHHHHHHHHhCCCch
Confidence            88888888888888888888764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=97.92  E-value=1.3e-05  Score=68.44  Aligned_cols=69  Identities=17%  Similarity=0.181  Sum_probs=56.5

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      +...-..|+.+++.|+|++|+..|++|+++               .+....++.|+|.|++++++|++|+..+.+++..+
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~---------------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~   69 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKA---------------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD   69 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            344567899999999999999999999997               12224578888888999999999988888888888


Q ss_pred             cccC
Q 015659          398 EAAR  401 (403)
Q Consensus       398 p~~~  401 (403)
                      |.+.
T Consensus        70 ~~~~   73 (184)
T 3vtx_A           70 TTSA   73 (184)
T ss_dssp             CCCH
T ss_pred             chhH
Confidence            7653

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=97.90  E-value=1.5e-05  Score=70.58  Aligned_cols=67  Identities=21%  Similarity=0.246  Sum_probs=41.5

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp  398 (403)
                      ..+...|+.+|+.|+|.+|+..|++++.+-..   .+           ..++.|+|.|++++++|.+|+.+++++++++|
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---~~-----------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p   73 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN---QD-----------SVTAYNCGVCADNIKKYKEAADYFDIAIKKNY   73 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT---CC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCC---CC-----------cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc
Confidence            45677899999999999999999999987320   01           12344444555555555555555555544444


Q ss_pred             c
Q 015659          399 A  399 (403)
Q Consensus       399 ~  399 (403)
                      .
T Consensus        74 ~   74 (228)
T 4i17_A           74 N   74 (228)
T ss_dssp             S
T ss_pred             c
Confidence            3

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=97.90  E-value=9.1e-06  Score=67.75  Aligned_cols=68  Identities=12%  Similarity=0.034  Sum_probs=57.7

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHH-HHHHHhcc
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIEL-CSKVIVER  397 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~-~~~aL~~d  397 (403)
                      ......|.-+++.|+|.+|+..|++|+++               .+....++.|+|.++++++++.+|+.. +++|++++
T Consensus        66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~---------------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~  130 (150)
T 4ga2_A           66 KAHRFLGLLYELEENTDKAVECYRRSVEL---------------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF  130 (150)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence            34567899999999999999999999997               222345899999999999999887765 69999999


Q ss_pred             cccC
Q 015659          398 EAAR  401 (403)
Q Consensus       398 p~~~  401 (403)
                      |.|.
T Consensus       131 P~~~  134 (150)
T 4ga2_A          131 PGSP  134 (150)
T ss_dssp             TTCH
T ss_pred             cCCH
Confidence            9885

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.89  E-value=1.2e-05  Score=61.73  Aligned_cols=34  Identities=12%  Similarity=0.051  Sum_probs=17.9

Q ss_pred             HHhhhHHHHHHHHc-cCHHHHHHHHHHHHhccccc
Q 015659          367 VSCWLNSAACCLKL-KDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       367 ~~~~~N~a~c~lkl-~~~~~ai~~~~~aL~~dp~~  400 (403)
                      ..++.|+|.|++++ +++++|+..+++++..+|.+
T Consensus        76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           76 KDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            34455555555555 55555555555555555543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.88  E-value=1.7e-05  Score=78.51  Aligned_cols=73  Identities=27%  Similarity=0.344  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHH
Q 015659          313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK  392 (403)
Q Consensus       313 e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~  392 (403)
                      |+.+.+..+...|+.+|+.|+|.+|+..|++++..-   +  +           ..++.|+|.|++++++|.+|+..+++
T Consensus         1 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p--~-----------~~~~~~la~~~~~~g~~~~A~~~~~~   64 (514)
T 2gw1_A            1 EKDKYALALKDKGNQFFRNKKYDDAIKYYNWALELK---E--D-----------PVFYSNLSACYVSVGDLKKVVEMSTK   64 (514)
T ss_dssp             CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---C--C-----------HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---c--c-----------HHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence            356788999999999999999999999999999972   1  1           34788888888888888888888888


Q ss_pred             HHhcccccC
Q 015659          393 VIVEREAAR  401 (403)
Q Consensus       393 aL~~dp~~~  401 (403)
                      +|+++|.+.
T Consensus        65 al~~~p~~~   73 (514)
T 2gw1_A           65 ALELKPDYS   73 (514)
T ss_dssp             HHHHCSCCH
T ss_pred             HhccChHHH
Confidence            888888763

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=97.88  E-value=1.3e-05  Score=84.46  Aligned_cols=85  Identities=20%  Similarity=0.226  Sum_probs=48.6

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCC--------------CCChH-----HHHHHHHHHHHhhhHHHHHH
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG--------------SFVDD-----EQKLVKSLRVSCWLNSAACC  377 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~--------------~~~~~-----~~~~~~~~~~~~~~N~a~c~  377 (403)
                      .+..+...|+.+++.|+|++|+..|++|+++-....              ...+.     ..-++++....+++|++.|+
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l   87 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL   87 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            345566677777777777777777777777521100              00000     00011223345677777777


Q ss_pred             HHccCHHHHHHHHHHHHhcccccC
Q 015659          378 LKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       378 lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      .++++|++|+..+++||+++|.++
T Consensus        88 ~~~g~~~~A~~~~~kAl~l~P~~~  111 (723)
T 4gyw_A           88 KEMQDVQGALQCYTRAIQINPAFA  111 (723)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCH
Confidence            777777777777777777777654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.83  E-value=3.5e-05  Score=61.16  Aligned_cols=27  Identities=11%  Similarity=0.000  Sum_probs=18.2

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADC  347 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~  347 (403)
                      +...|..++..++|.+|+..|++++.+
T Consensus        53 ~~~la~~~~~~~~~~~A~~~~~~a~~~   79 (133)
T 2lni_A           53 YSNRAACYTKLLEFQLALKDCEECIQL   79 (133)
T ss_dssp             HHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            445566667777777777777777765

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.83  E-value=2.8e-05  Score=62.59  Aligned_cols=67  Identities=15%  Similarity=0.113  Sum_probs=58.3

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp  398 (403)
                      ..+...|.-+++.|+|..|+..|++++.+-.               ....++.|+|.|++++++|.+|+..+.++|+++|
T Consensus        44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p---------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p  108 (137)
T 3q49_B           44 VYYTNRALCYLKMQQPEQALADCRRALELDG---------------QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK  108 (137)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc---------------hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence            3456779999999999999999999999721               1245899999999999999999999999999999


Q ss_pred             cc
Q 015659          399 AA  400 (403)
Q Consensus       399 ~~  400 (403)
                      .+
T Consensus       109 ~~  110 (137)
T 3q49_B          109 EQ  110 (137)
T ss_dssp             HT
T ss_pred             hH
Confidence            83

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.83  E-value=3e-05  Score=61.70  Aligned_cols=66  Identities=8%  Similarity=0.037  Sum_probs=38.1

Q ss_pred             HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      ..|..+++.|+|.+|+..|++++.....            ......++.++|.|+.+++++++|+..++++++.+|.+
T Consensus        44 ~lg~~~~~~~~~~~A~~~~~~~~~~~p~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  109 (129)
T 2xev_A           44 WLGESYYATRNFQLAEAQFRDLVSRYPT------------HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGS  109 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTT------------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHCCC------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence            3444455555555555555555553111            11124556777777777777777777777777777654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.82  E-value=8.6e-06  Score=81.62  Aligned_cols=64  Identities=13%  Similarity=0.167  Sum_probs=36.8

Q ss_pred             HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      ..|..+++.|+|++|+..|++|+++               .+....+++|+|.+|+++++|++|+..+++||+++|.+.
T Consensus        45 ~lg~~~~~~g~~~~A~~~~~~al~l---------------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~  108 (477)
T 1wao_1           45 NRSLAYLRTECYGYALGDATRAIEL---------------DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK  108 (477)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHS---------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCT
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            3444444555555555555555443               111234666777777777777777777777777766654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.78  E-value=4.1e-05  Score=66.39  Aligned_cols=69  Identities=13%  Similarity=-0.030  Sum_probs=60.5

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      +..+...|..+++.|+|.+|+..|++|+.+-.               ....+++|+|.|++++++|++|+..+.++|+++
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  152 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDK---------------NNVKALYKLGVANMYFGFLEEAKENLYKAASLN  152 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc---------------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence            45667889999999999999999999999721               224689999999999999999999999999999


Q ss_pred             cccC
Q 015659          398 EAAR  401 (403)
Q Consensus       398 p~~~  401 (403)
                      |.+.
T Consensus       153 p~~~  156 (198)
T 2fbn_A          153 PNNL  156 (198)
T ss_dssp             TTCH
T ss_pred             CCcH
Confidence            9874

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.77  E-value=5.4e-05  Score=60.17  Aligned_cols=69  Identities=12%  Similarity=0.089  Sum_probs=58.6

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      .+-..|..+++.|+|.+|+..|++++......            .....++.++|.|++++++|.+|+..++++++.+|.
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~   71 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNG------------VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT   71 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSS------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC------------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence            35567899999999999999999999973321            122358899999999999999999999999999998


Q ss_pred             c
Q 015659          400 A  400 (403)
Q Consensus       400 ~  400 (403)
                      +
T Consensus        72 ~   72 (129)
T 2xev_A           72 H   72 (129)
T ss_dssp             S
T ss_pred             C
Confidence            6

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.76  E-value=5.3e-05  Score=61.42  Aligned_cols=69  Identities=14%  Similarity=0.116  Sum_probs=59.3

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      ...+...|..+++.++|.+|+..|++++..-..               ...++.|+|.|++++++|.+|+..+.++|+++
T Consensus        65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  129 (148)
T 2dba_A           65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGG---------------DVKALYRRSQALEKLGRLDQAVLDLQRCVSLE  129 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            455667788999999999999999999997221               14578999999999999999999999999999


Q ss_pred             cccC
Q 015659          398 EAAR  401 (403)
Q Consensus       398 p~~~  401 (403)
                      |.+.
T Consensus       130 p~~~  133 (148)
T 2dba_A          130 PKNK  133 (148)
T ss_dssp             SSCH
T ss_pred             CCcH
Confidence            9764

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.75  E-value=3e-05  Score=59.40  Aligned_cols=64  Identities=25%  Similarity=0.357  Sum_probs=56.0

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      +...|..+++.|+|.+|+..|++++.....               ...++.|+|.|++++++|++|+..++++++++|.
T Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A            9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPE---------------ESKYWLMKGKALYNLERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             GGGHHHHHHSSCCHHHHHHHHHHHHHHCCC---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhCcC---------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            456788899999999999999999997321               1347899999999999999999999999999987

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.75  E-value=5.6e-05  Score=58.37  Aligned_cols=27  Identities=22%  Similarity=0.256  Sum_probs=17.7

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADC  347 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~  347 (403)
                      +...|..+++.|+|.+|+..|++++..
T Consensus        41 ~~~~a~~~~~~~~~~~A~~~~~~~~~~   67 (118)
T 1elw_A           41 YSNRSAAYAKKGDYQKAYEDGCKTVDL   67 (118)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            344566666677777777777777665

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.73  E-value=5.7e-05  Score=65.71  Aligned_cols=68  Identities=9%  Similarity=0.081  Sum_probs=55.6

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp  398 (403)
                      ..+...|..+++.|+|.+|+..|++|+.+..               ....+++|+|.|++++++|++|+..+++++++.|
T Consensus        38 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~  102 (213)
T 1hh8_A           38 RICFNIGCMYTILKNMTEAEKAFTRSINRDK---------------HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR  102 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---------------cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC
Confidence            3556778888888888888888888888621               1245789999999999999999999999999888


Q ss_pred             ccC
Q 015659          399 AAR  401 (403)
Q Consensus       399 ~~~  401 (403)
                      .+.
T Consensus       103 ~~~  105 (213)
T 1hh8_A          103 GNQ  105 (213)
T ss_dssp             TCS
T ss_pred             Ccc
Confidence            764

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=97.72  E-value=2.5e-05  Score=69.19  Aligned_cols=67  Identities=18%  Similarity=0.126  Sum_probs=59.1

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      .+...|..+++.|+|.+|+..|++++..               .+....++.|+|.|+++++++.+|+..++++|+++|.
T Consensus         7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~---------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~   71 (217)
T 2pl2_A            7 NPLRLGVQLYALGRYDAALTLFERALKE---------------NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR   71 (217)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTT---------------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            4567899999999999999999999986               2223568999999999999999999999999999998


Q ss_pred             cC
Q 015659          400 AR  401 (403)
Q Consensus       400 ~~  401 (403)
                      +.
T Consensus        72 ~~   73 (217)
T 2pl2_A           72 YL   73 (217)
T ss_dssp             CH
T ss_pred             cH
Confidence            74

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=97.68  E-value=5.9e-05  Score=66.74  Aligned_cols=65  Identities=12%  Similarity=0.089  Sum_probs=56.8

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      ....|..++..|++.+|+..|++|+++- .               ...+++|+|.|+++++++++|+..++++|+++|.+
T Consensus       121 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~  184 (217)
T 2pl2_A          121 HLQRGLVYALLGERDKAEASLKQALALE-D---------------TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKD  184 (217)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-C---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcc-c---------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            4567888999999999999999999973 1               13578999999999999999999999999999987


Q ss_pred             C
Q 015659          401 R  401 (403)
Q Consensus       401 ~  401 (403)
                      .
T Consensus       185 ~  185 (217)
T 2pl2_A          185 L  185 (217)
T ss_dssp             H
T ss_pred             h
Confidence            5

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.67  E-value=7.9e-05  Score=66.17  Aligned_cols=71  Identities=10%  Similarity=0.020  Sum_probs=59.9

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp  398 (403)
                      ..+-..|..+++.|+|.+|+..|++++......            +....+++++|.|++++++|.+|+..++++++.+|
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~------------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P   72 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFG------------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP   72 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc
Confidence            445677999999999999999999999963221            12235889999999999999999999999999999


Q ss_pred             ccC
Q 015659          399 AAR  401 (403)
Q Consensus       399 ~~~  401 (403)
                      .+.
T Consensus        73 ~~~   75 (225)
T 2yhc_A           73 THP   75 (225)
T ss_dssp             TCT
T ss_pred             CCC
Confidence            875

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.67  E-value=0.00014  Score=67.26  Aligned_cols=76  Identities=12%  Similarity=0.060  Sum_probs=63.9

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      .+..+...|+.++..|+|++|+..|++|+..+...+. .       ......+++|+|.||.++++|++|+.+++++|++
T Consensus       154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~-------~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~  225 (293)
T 3u3w_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-N-------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC-C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-c-------hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            4456778899999999999999999999998754321 1       4556779999999999999999999999999998


Q ss_pred             cccc
Q 015659          397 REAA  400 (403)
Q Consensus       397 dp~~  400 (403)
                      .+..
T Consensus       226 ~~~~  229 (293)
T 3u3w_A          226 SCRI  229 (293)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            7654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.66  E-value=5.2e-05  Score=73.30  Aligned_cols=67  Identities=15%  Similarity=0.060  Sum_probs=58.4

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      .+...|..+++.++|.+|+..|++|+++-               +....+++|+|.||+++++|++|+.++++||+++|.
T Consensus       275 ~~~nla~~~~~~g~~~~A~~~~~~al~~~---------------p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~  339 (370)
T 1ihg_A          275 CVLNIGACKLKMSDWQGAVDSCLEALEID---------------PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE  339 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhC---------------chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            34567888999999999999999999962               123568999999999999999999999999999998


Q ss_pred             cC
Q 015659          400 AR  401 (403)
Q Consensus       400 ~~  401 (403)
                      +.
T Consensus       340 ~~  341 (370)
T 1ihg_A          340 DK  341 (370)
T ss_dssp             CH
T ss_pred             CH
Confidence            74

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=97.66  E-value=4.7e-05  Score=80.11  Aligned_cols=82  Identities=12%  Similarity=0.046  Sum_probs=55.9

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccC--------------CCCChH-----HHHHHHHHHHHhhhHHHHHHHHc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSED--------------GSFVDD-----EQKLVKSLRVSCWLNSAACCLKL  380 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~--------------~~~~~~-----~~~~~~~~~~~~~~N~a~c~lkl  380 (403)
                      .+...|+.+++.|+|++|+..|++|+++-...              ....+.     ..-++++....+++|+|.+|.++
T Consensus        45 a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~  124 (723)
T 4gyw_A           45 AHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS  124 (723)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            34456777777777777777777777752110              000000     00122344466999999999999


Q ss_pred             cCHHHHHHHHHHHHhcccccC
Q 015659          381 KDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       381 ~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      |++++|+..+++||+++|.++
T Consensus       125 g~~~eAi~~~~~Al~l~P~~~  145 (723)
T 4gyw_A          125 GNIPEAIASYRTALKLKPDFP  145 (723)
T ss_dssp             TCHHHHHHHHHHHHHHCSCCH
T ss_pred             CCHHHHHHHHHHHHHhCCCCh
Confidence            999999999999999999875

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.64  E-value=0.00017  Score=60.17  Aligned_cols=68  Identities=10%  Similarity=0.064  Sum_probs=52.2

Q ss_pred             HHHHhhHhhhcC---cHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          321 KKEEGNLLFKNG---KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       321 ~k~~Gn~~fk~~---~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      .-+.|..+.+++   ++++|+..++..++. .     .+       ..+..|++|+|..|+|+++|.+|+.+|+++|+++
T Consensus        35 ~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-----~p-------~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie  101 (152)
T 1pc2_A           35 QFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-----SK-------EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE  101 (152)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-----CH-------HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-----Cc-------cchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            345566666666   666788877777774 1     01       1234588999999999999999999999999999


Q ss_pred             cccC
Q 015659          398 EAAR  401 (403)
Q Consensus       398 p~~~  401 (403)
                      |.|.
T Consensus       102 P~n~  105 (152)
T 1pc2_A          102 PQNN  105 (152)
T ss_dssp             TTCH
T ss_pred             CCCH
Confidence            9884

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.63  E-value=0.00011  Score=57.72  Aligned_cols=26  Identities=19%  Similarity=0.138  Sum_probs=16.0

Q ss_pred             HHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659          322 KEEGNLLFKNGKYERAGKKYNKAADC  347 (403)
Q Consensus       322 k~~Gn~~fk~~~~~~A~~~Y~~al~~  347 (403)
                      ...|..++..|+|.+|+..|.+++..
T Consensus        50 ~~~a~~~~~~~~~~~A~~~~~~~~~~   75 (131)
T 2vyi_A           50 CNRAAAYSKLGNYAGAVQDCERAICI   75 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHhc
Confidence            34455566666666666666666664

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.63  E-value=9.8e-05  Score=61.07  Aligned_cols=67  Identities=12%  Similarity=0.134  Sum_probs=57.7

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      .+...|..+++.|+|.+|+..|++++.+...               ...++.|+|.|+.+++++.+|+..+.++++++|.
T Consensus        49 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~  113 (166)
T 1a17_A           49 YYGNRSLAYLRTECYGYALGDATRAIELDKK---------------YIKGYYRRAASNMALGKFRAALRDYETVVKVKPH  113 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            3556788899999999999999999997221               2457899999999999999999999999999997


Q ss_pred             cC
Q 015659          400 AR  401 (403)
Q Consensus       400 ~~  401 (403)
                      +.
T Consensus       114 ~~  115 (166)
T 1a17_A          114 DK  115 (166)
T ss_dssp             CH
T ss_pred             CH
Confidence            64

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=97.62  E-value=6.1e-05  Score=74.29  Aligned_cols=79  Identities=11%  Similarity=0.071  Sum_probs=64.0

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCCCCCCCCCCCCCCCC
Q 015659           61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPP  140 (403)
Q Consensus        61 ~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~~~ayg~~~~~~ip~  140 (403)
                      .++.||.|+++|+++ .||..|+++..  .++.|.+|.+.  + |+.+|.||++|++..|.+++               +
T Consensus       154 ~a~~gD~V~id~~~~-~dG~~~~~~~~--~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~vtF---------------a  212 (433)
T 3gty_X          154 PAEAGDLVRVNMEVY-NEEGKKLTSRE--YEYVISEDEDR--P-FVKDLVGKKKGDVVEIEREY---------------E  212 (433)
T ss_dssp             CCCTTSEEEEEEEEE-CTTSCEEEEEE--EEEECCSSCCC--T-THHHHTTCCTTCEEEEEEEE---------------T
T ss_pred             ccCCCCEEEEEEEEE-ECCEECcCCCC--CCeEEEecCCc--h-HHHHhCCCCCCceEEEEEee---------------C
Confidence            478999999999988 49999998643  67888889887  4 99999999999999994433               3


Q ss_pred             CCeEEEEEEeccceeeeccC
Q 015659          141 NSVVQFEVELVSWITVVDLS  160 (403)
Q Consensus       141 ~~~l~~~v~l~~~~~~~dv~  160 (403)
                      |....|.|.|..++...-..
T Consensus       213 Gk~a~F~VtV~~Ik~~~lPE  232 (433)
T 3gty_X          213 GKKYTYKLEVEEVYKRTLPE  232 (433)
T ss_dssp             TEEEEEEEEEEEEEEECCCC
T ss_pred             CCeEEEEEEEEEEEEecCCc
Confidence            67889999999987644333

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=97.61  E-value=0.00011  Score=64.94  Aligned_cols=66  Identities=15%  Similarity=0.097  Sum_probs=58.1

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      ....|..+++.|+|.+|+..|++|+..               .+....++.|+|.|+.++++|.+|+..++++|+++|.+
T Consensus        45 ~~~~~~~~~~~~~~~~A~~~~~~al~~---------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~  109 (228)
T 4i17_A           45 AYNCGVCADNIKKYKEAADYFDIAIKK---------------NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGN  109 (228)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHT---------------TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHh---------------CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence            344799999999999999999999986               22245689999999999999999999999999999986


Q ss_pred             C
Q 015659          401 R  401 (403)
Q Consensus       401 ~  401 (403)
                      .
T Consensus       110 ~  110 (228)
T 4i17_A          110 A  110 (228)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=97.61  E-value=8.7e-05  Score=67.16  Aligned_cols=72  Identities=15%  Similarity=0.135  Sum_probs=61.0

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      +..+-..|..+|+.|+|.+|+..|++++......            +....+++++|.|++++++|.+|+..++++|+++
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~------------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~   82 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH------------EWAADAQFYLARAYYQNKEYLLAASEYERFIQIY   82 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------------cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC
Confidence            4567788999999999999999999999863221            1235689999999999999999999999999999


Q ss_pred             cccC
Q 015659          398 EAAR  401 (403)
Q Consensus       398 p~~~  401 (403)
                      |.+.
T Consensus        83 p~~~   86 (261)
T 3qky_A           83 QIDP   86 (261)
T ss_dssp             TTCT
T ss_pred             CCCc
Confidence            8763

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.60  E-value=0.0002  Score=56.29  Aligned_cols=71  Identities=17%  Similarity=0.290  Sum_probs=58.6

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp  398 (403)
                      .....|..++..|+|.+|+..|++++........ .       ......++.|+|.|++++++|.+|+..+.++++++|
T Consensus        40 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  110 (131)
T 1elr_A           40 YITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE-D-------YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR  110 (131)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT-C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhccccch-h-------HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            3456788999999999999999999997543211 1       223366899999999999999999999999999988

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.59  E-value=3e-05  Score=61.32  Aligned_cols=60  Identities=17%  Similarity=0.151  Sum_probs=47.2

Q ss_pred             hcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          330 KNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       330 k~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      ..|+|.+|+..|++|+.+-     .+       .+....++.|++.|++++++|.+|+..++++|+++|.+.
T Consensus         2 ~~g~~~~A~~~~~~al~~~-----~~-------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   61 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASG-----LQ-------GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ   61 (117)
T ss_dssp             -----CCCHHHHHHHHSSC-----CC-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CCCcHHHHHHHHHHHHHcC-----CC-------CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Confidence            3588999999999999851     11       234567899999999999999999999999999999874

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.59  E-value=8.7e-05  Score=65.95  Aligned_cols=69  Identities=26%  Similarity=0.390  Sum_probs=61.7

Q ss_pred             HHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIV  395 (403)
Q Consensus       316 ~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~  395 (403)
                      ..+..+...|+.+++.|+|.+|+..|+++++.. ..               ..++.++|.|+.++++|++|+..++++++
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~   66 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD---------------ITYLNNRAAAEYEKGEYETAISTLNDAVE   66 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC---------------THHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            357788999999999999999999999999974 11               34889999999999999999999999999


Q ss_pred             ccccc
Q 015659          396 EREAA  400 (403)
Q Consensus       396 ~dp~~  400 (403)
                      ++|.+
T Consensus        67 ~~~~~   71 (258)
T 3uq3_A           67 QGREM   71 (258)
T ss_dssp             HHHHT
T ss_pred             hCccc
Confidence            99875

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.58  E-value=0.00015  Score=56.37  Aligned_cols=34  Identities=26%  Similarity=0.384  Sum_probs=26.3

Q ss_pred             HhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          368 SCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       368 ~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      .++.|+|.++.+++++.+|+..++++++++|.+.
T Consensus        78 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  111 (125)
T 1na0_A           78 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA  111 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Confidence            4667888888888888888888888888877653

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.51  E-value=0.00021  Score=55.54  Aligned_cols=68  Identities=28%  Similarity=0.390  Sum_probs=58.1

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      +..+...|..++..|+|..|+..|++++.....               ...++.++|.|+.+++++.+|+..++++++++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   73 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---------------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD   73 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            445667889999999999999999999987221               13478899999999999999999999999998


Q ss_pred             ccc
Q 015659          398 EAA  400 (403)
Q Consensus       398 p~~  400 (403)
                      |.+
T Consensus        74 ~~~   76 (125)
T 1na0_A           74 PNN   76 (125)
T ss_dssp             TTC
T ss_pred             Ccc
Confidence            865

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.51  E-value=8.2e-05  Score=72.27  Aligned_cols=27  Identities=11%  Similarity=-0.146  Sum_probs=18.5

Q ss_pred             HHHHhhHhhhcCc-HHHHHHHHHHHHHH
Q 015659          321 KKEEGNLLFKNGK-YERAGKKYNKAADC  347 (403)
Q Consensus       321 ~k~~Gn~~fk~~~-~~~A~~~Y~~al~~  347 (403)
                      +..+|+.+++.|+ |.+|+..|++|+.+
T Consensus       134 ~~~~g~~l~~~g~d~~eAl~~~~~al~l  161 (382)
T 2h6f_A          134 WHFRRVLLKSLQKDLHEEMNYITAIIEE  161 (382)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccCHHHHHHHHHHHHHH
Confidence            4456667777775 77777777777775

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.50  E-value=0.00044  Score=63.95  Aligned_cols=75  Identities=27%  Similarity=0.317  Sum_probs=61.4

Q ss_pred             HHHHHHHhhHhhhc-CcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          318 AGRKKEEGNLLFKN-GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~-~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      +..+...|..+.+. |+|.+|+..|++|+.+......         ......+++|++.+++++++|.+|+..+++++++
T Consensus       117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~---------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  187 (292)
T 1qqe_A          117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS---------VALSNKCFIKCADLKALDGQYIEASDIYSKLIKS  187 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC---------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            44566788888886 9999999999999998543210         1233568999999999999999999999999999


Q ss_pred             ccccC
Q 015659          397 REAAR  401 (403)
Q Consensus       397 dp~~~  401 (403)
                      +|.+.
T Consensus       188 ~~~~~  192 (292)
T 1qqe_A          188 SMGNR  192 (292)
T ss_dssp             TSSCT
T ss_pred             HhcCC
Confidence            98764

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.50  E-value=0.00011  Score=71.42  Aligned_cols=84  Identities=13%  Similarity=0.089  Sum_probs=49.7

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCC-------------CC-ChHHH------HHHHHHHHHhhhHHHHH
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-------------SF-VDDEQ------KLVKSLRVSCWLNSAAC  376 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-------------~~-~~~~~------~~~~~~~~~~~~N~a~c  376 (403)
                      .+..+...|..+++.|+|.+|+..|++||.+-....             +. .++..      ..+.+-...+++|++.|
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~  175 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL  175 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            345566688899999999999999999999621100             00 00100      01122223455566666


Q ss_pred             HHHccCHHHHHHHHHHHHhccccc
Q 015659          377 CLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       377 ~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      +.++++|.+|+..+++||+++|.|
T Consensus       176 ~~~~g~~~eAl~~~~kal~ldP~~  199 (382)
T 2h6f_A          176 VEWLRDPSQELEFIADILNQDAKN  199 (382)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             HHHccCHHHHHHHHHHHHHhCccC
Confidence            666666666666666666666654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.48  E-value=0.00048  Score=55.93  Aligned_cols=71  Identities=17%  Similarity=0.153  Sum_probs=35.5

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      .+..+...|..++..|+|.+|+..|++++.+......         ......++.|+|.+++.+++|.+|+..+++++++
T Consensus         8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   78 (164)
T 3ro3_A            8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLL   78 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC---------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4445555666666666666666666666665432110         1122334444444444444444444444444443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.45  E-value=0.00043  Score=64.52  Aligned_cols=74  Identities=14%  Similarity=0.065  Sum_probs=49.4

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      .+..+...|.-+.+ |+|.+|+..|++|+.+......         ......++.|++.+|.++++|.+|+.+++++|++
T Consensus       115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~---------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  184 (307)
T 2ifu_A          115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER---------LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM  184 (307)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC---------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34455666777777 8888888888888887543211         1223456777777777777777777777777776


Q ss_pred             cccc
Q 015659          397 REAA  400 (403)
Q Consensus       397 dp~~  400 (403)
                      .|.+
T Consensus       185 ~~~~  188 (307)
T 2ifu_A          185 YKEM  188 (307)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            6543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.42  E-value=0.00017  Score=72.13  Aligned_cols=71  Identities=23%  Similarity=0.196  Sum_probs=62.8

Q ss_pred             HHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIV  395 (403)
Q Consensus       316 ~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~  395 (403)
                      +.+..+...|+.+++.|+|++|+..|++|+++-               +....++.|+|.|++++++|++|+.++++||+
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~---------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   68 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELN---------------PSNAIYYGNRSLAYLRTECYGYALGDATRAIE   68 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---------------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            456778889999999999999999999999972               12256899999999999999999999999999


Q ss_pred             cccccC
Q 015659          396 EREAAR  401 (403)
Q Consensus       396 ~dp~~~  401 (403)
                      ++|.++
T Consensus        69 l~p~~~   74 (477)
T 1wao_1           69 LDKKYI   74 (477)
T ss_dssp             SCTTCH
T ss_pred             hCCCCH
Confidence            999864

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.42  E-value=0.00026  Score=62.81  Aligned_cols=67  Identities=25%  Similarity=0.332  Sum_probs=43.0

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp  398 (403)
                      ......|..++..|+|.+|+..|++++.....               ...++.|+|.|++++++|.+|+..++++|+++|
T Consensus       140 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  204 (258)
T 3uq3_A          140 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE---------------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP  204 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc---------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence            34557788889999999999999999886321               123455555555555555555555555555555


Q ss_pred             cc
Q 015659          399 AA  400 (403)
Q Consensus       399 ~~  400 (403)
                      .+
T Consensus       205 ~~  206 (258)
T 3uq3_A          205 NF  206 (258)
T ss_dssp             TC
T ss_pred             HH
Confidence            43

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.42  E-value=0.0005  Score=63.45  Aligned_cols=75  Identities=12%  Similarity=0.064  Sum_probs=61.4

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      .+..+...|+.++..|+|.+|+..|++|+.+....+. .       ......+++|+|.||+++++|++|+..++++|++
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~-~-------~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~  225 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-N-------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc-c-------ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            3556778899999999999999999999987654331 1       2223478999999999999999999999999988


Q ss_pred             ccc
Q 015659          397 REA  399 (403)
Q Consensus       397 dp~  399 (403)
                      .+.
T Consensus       226 ~~~  228 (293)
T 2qfc_A          226 SCR  228 (293)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            653

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.42  E-value=0.0002  Score=66.73  Aligned_cols=68  Identities=19%  Similarity=0.235  Sum_probs=43.9

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      +..+...|+.+++.|+|.+|+..|++++..-..               ...++.++|.|++++++|.+|+..++++++++
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~   67 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD---------------NYIAYYRRATVFLAMGKSKAALPDLTKVIALK   67 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc---------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            455677888888999999999999988885211               12355555555555555555555555555555


Q ss_pred             ccc
Q 015659          398 EAA  400 (403)
Q Consensus       398 p~~  400 (403)
                      |.+
T Consensus        68 ~~~   70 (359)
T 3ieg_A           68 MDF   70 (359)
T ss_dssp             TTC
T ss_pred             CCc
Confidence            543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.42  E-value=0.00013  Score=67.39  Aligned_cols=67  Identities=16%  Similarity=0.152  Sum_probs=58.6

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      .+...|..+++.|+|.+|+..|++|+.+-               +....+++|+|.+++++++|.+|+..+.++|+++|.
T Consensus        40 ~~~~la~~~~~~~~~~~A~~~~~~al~~~---------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  104 (281)
T 2c2l_A           40 YYTNRALCYLKMQQPEQALADCRRALELD---------------GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  104 (281)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTTSC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            45578999999999999999999999861               122468999999999999999999999999999998


Q ss_pred             cC
Q 015659          400 AR  401 (403)
Q Consensus       400 ~~  401 (403)
                      +.
T Consensus       105 ~~  106 (281)
T 2c2l_A          105 QR  106 (281)
T ss_dssp             TT
T ss_pred             ch
Confidence            74

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.41  E-value=0.00023  Score=61.73  Aligned_cols=82  Identities=16%  Similarity=0.063  Sum_probs=60.1

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCC-hHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFV-DDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~-~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      ..+...|.-+++.|+|.+|+..|++++.......... ........+....++.|+|.|+.++++|.+|+..+.++++++
T Consensus        72 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           72 VAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            3456789999999999999999999999743221000 000000011224688999999999999999999999999999


Q ss_pred             ccc
Q 015659          398 EAA  400 (403)
Q Consensus       398 p~~  400 (403)
                      |.+
T Consensus       152 p~~  154 (213)
T 1hh8_A          152 SEP  154 (213)
T ss_dssp             CSG
T ss_pred             ccc
Confidence            965

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.38  E-value=0.00027  Score=63.51  Aligned_cols=67  Identities=15%  Similarity=0.076  Sum_probs=38.7

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      +..+...|..++..|+|.+|+..|++++..-..               ...++.|+|.|+.++++|++|+..++++++++
T Consensus        43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  107 (275)
T 1xnf_A           43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPD---------------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD  107 (275)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC---------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            444556677888888888888888888876211               12234444444444444444444444444444


Q ss_pred             cc
Q 015659          398 EA  399 (403)
Q Consensus       398 p~  399 (403)
                      |.
T Consensus       108 ~~  109 (275)
T 1xnf_A          108 PT  109 (275)
T ss_dssp             TT
T ss_pred             cc
Confidence            43

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.37  E-value=0.00088  Score=54.31  Aligned_cols=71  Identities=18%  Similarity=0.191  Sum_probs=51.2

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      +..+...|..++..|+|.+|+..|++++.+......         ......++.|+|.|++.+++|++|+..+++++++.
T Consensus        49 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  119 (164)
T 3ro3_A           49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA  119 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC---------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            345667899999999999999999999998654321         22334566777777777777777777777776653

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.34  E-value=0.00035  Score=59.01  Aligned_cols=83  Identities=17%  Similarity=0.181  Sum_probs=58.7

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc---------------CCCC-ChHHHHH------HHHHHHHhhhHHHHH
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSE---------------DGSF-VDDEQKL------VKSLRVSCWLNSAAC  376 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~---------------~~~~-~~~~~~~------~~~~~~~~~~N~a~c  376 (403)
                      ..+...|..++..|+|.+|+..|++++.+...               .... .++-...      ..+....++.|+|.|
T Consensus        45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  124 (177)
T 2e2e_A           45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASD  124 (177)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            34567788899999999999999999886421               1111 0211111      122335678889999


Q ss_pred             HHHccCHHHHHHHHHHHHhcccccC
Q 015659          377 CLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       377 ~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      ++++++|.+|+..+.++|+++|.+.
T Consensus       125 ~~~~g~~~~A~~~~~~al~~~p~~~  149 (177)
T 2e2e_A          125 AFMQANYAQAIELWQKVMDLNSPRI  149 (177)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred             HHHcccHHHHHHHHHHHHhhCCCCc
Confidence            9999999999999999999988774

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.33  E-value=0.00011  Score=62.35  Aligned_cols=64  Identities=22%  Similarity=0.228  Sum_probs=57.4

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp  398 (403)
                      .....|..+++.|+|.+|+..|++++..               .+-...++.|+|.+++++|+|++|+..+++++..+|
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---------------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p   71 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDE---------------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ   71 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHH---------------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC
Confidence            4556788999999999999999999997               455567899999999999999999999999999988

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.33  E-value=0.00073  Score=62.47  Aligned_cols=75  Identities=13%  Similarity=-0.000  Sum_probs=58.2

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHc-cCHHHHHHHHHHHHh
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL-KDYQGAIELCSKVIV  395 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl-~~~~~ai~~~~~aL~  395 (403)
                      .+..+...|+.+.+.|+|.+|+..|++|+.+......         ......++.|++.+|.++ +++++|+.++++||+
T Consensus        76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~---------~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~  146 (292)
T 1qqe_A           76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ---------FRRGANFKFELGEILENDLHDYAKAIDCYELAGE  146 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            3556667788888888888888888888887533211         122356889999999995 999999999999999


Q ss_pred             ccccc
Q 015659          396 EREAA  400 (403)
Q Consensus       396 ~dp~~  400 (403)
                      +.|.+
T Consensus       147 ~~~~~  151 (292)
T 1qqe_A          147 WYAQD  151 (292)
T ss_dssp             HHHHT
T ss_pred             HHHhC
Confidence            98864

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.32  E-value=0.00037  Score=58.84  Aligned_cols=27  Identities=7%  Similarity=0.087  Sum_probs=20.6

Q ss_pred             HHHHhhH-hhhcCcH--HHHHHHHHHHHHH
Q 015659          321 KKEEGNL-LFKNGKY--ERAGKKYNKAADC  347 (403)
Q Consensus       321 ~k~~Gn~-~fk~~~~--~~A~~~Y~~al~~  347 (403)
                      +...|.. +++.|+|  ..|+..|++++..
T Consensus        81 ~~~la~~l~~~~~~~~~~~A~~~~~~al~~  110 (177)
T 2e2e_A           81 YAALATVLYYQASQHMTAQTRAMIDKALAL  110 (177)
T ss_dssp             HHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence            3456777 6678888  8888888888886

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.27  E-value=0.00064  Score=67.05  Aligned_cols=74  Identities=15%  Similarity=0.016  Sum_probs=62.6

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      .+..+...|..+...|+|++|+..|++++.+.....+.+       ++.....++|+|..|..+|+|++|+..+.+||++
T Consensus       339 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-------Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          339 MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY-------SLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            445566789999999999999999999999876544433       4556778999999999999999999999999986


Q ss_pred             c
Q 015659          397 R  397 (403)
Q Consensus       397 d  397 (403)
                      -
T Consensus       412 ~  412 (433)
T 3qww_A          412 M  412 (433)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.26  E-value=0.00093  Score=66.97  Aligned_cols=79  Identities=10%  Similarity=0.003  Sum_probs=66.0

Q ss_pred             hHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHH
Q 015659          312 QGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCS  391 (403)
Q Consensus       312 ~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~  391 (403)
                      .+.+..+....+.+..+...|+|.+|+..|++++.+....-+.+       ++.....++|+|.+|..+|+|++|+..+.
T Consensus       303 ~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~-------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~  375 (490)
T 3n71_A          303 KEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADT-------NLYVLRLLSIASEVLSYLQAYEEASHYAR  375 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTT-------SHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            34566677777888888899999999999999999876544433       45567899999999999999999999999


Q ss_pred             HHHhcc
Q 015659          392 KVIVER  397 (403)
Q Consensus       392 ~aL~~d  397 (403)
                      ++|++-
T Consensus       376 ~aL~i~  381 (490)
T 3n71_A          376 RMVDGY  381 (490)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999764

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.25  E-value=0.0012  Score=61.45  Aligned_cols=74  Identities=15%  Similarity=0.105  Sum_probs=60.9

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      +..+...|..+++.|+|.+|+..|++++.+......         ......+++|++.|++.++++.+|+.+++++| ++
T Consensus       155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~  224 (307)
T 2ifu_A          155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN---------YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SI  224 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CC
Confidence            455667899999999999999999999998543221         12334588999999999999999999999999 99


Q ss_pred             cccC
Q 015659          398 EAAR  401 (403)
Q Consensus       398 p~~~  401 (403)
                      |...
T Consensus       225 p~~~  228 (307)
T 2ifu_A          225 PGFS  228 (307)
T ss_dssp             TTST
T ss_pred             CCCC
Confidence            9653

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.22  E-value=0.00032  Score=73.34  Aligned_cols=66  Identities=21%  Similarity=0.160  Sum_probs=56.2

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      +...|..+++.|+|++|+..|++|++.-               +....+++|++.+++++++|++|+.++++||+++|.+
T Consensus       436 ~~~~a~~~~~~g~~~~A~~~~~~al~~~---------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  500 (681)
T 2pzi_A          436 PLMEVRALLDLGDVAKATRKLDDLAERV---------------GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE  500 (681)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHH---------------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhccC---------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            4567889999999999999999999972               2234588899999999999999999999999999987


Q ss_pred             C
Q 015659          401 R  401 (403)
Q Consensus       401 ~  401 (403)
                      .
T Consensus       501 ~  501 (681)
T 2pzi_A          501 L  501 (681)
T ss_dssp             S
T ss_pred             h
Confidence            5

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.20  E-value=0.00047  Score=61.90  Aligned_cols=68  Identities=10%  Similarity=-0.023  Sum_probs=58.2

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp  398 (403)
                      ..+...|.-+++.|+|.+|+..|++++.....               ...++.|+|.|+++++++.+|+..++++++++|
T Consensus        78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  142 (275)
T 1xnf_A           78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT---------------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP  142 (275)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc---------------ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            34566789999999999999999999997221               135889999999999999999999999999999


Q ss_pred             ccC
Q 015659          399 AAR  401 (403)
Q Consensus       399 ~~~  401 (403)
                      .+.
T Consensus       143 ~~~  145 (275)
T 1xnf_A          143 NDP  145 (275)
T ss_dssp             TCH
T ss_pred             CCh
Confidence            763

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.20  E-value=0.00068  Score=53.07  Aligned_cols=63  Identities=29%  Similarity=0.445  Sum_probs=44.3

Q ss_pred             HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      ..|.-+++.|++.+|+..|.+++.....               ...++.++|.++.+++++.+|+..+.++++++|.+
T Consensus        74 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           74 NLGNAYYKQGDYDEAIEYYQKALELDPR---------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCC---------------ChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            4455566666777777777666664211               13467788888888888888888888888888753

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=97.20  E-value=0.00027  Score=69.30  Aligned_cols=74  Identities=16%  Similarity=0.057  Sum_probs=58.8

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      .....|..++..|+|++|+..|++|+++........      .+......+.|+|.+|..+++|.+|+.++++++++.+.
T Consensus        53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~------~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~  126 (472)
T 4g1t_A           53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQ------AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK  126 (472)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGG------CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccc------cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence            345679999999999999999999999864321100      01223568999999999999999999999999998764

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.19  E-value=0.00063  Score=56.69  Aligned_cols=65  Identities=15%  Similarity=0.025  Sum_probs=47.3

Q ss_pred             HHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       322 k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      ...|..+++.|++.+|+..|++++....               ....++.++|.++.+++++.+|+..++++++++|.+.
T Consensus       114 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~---------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  178 (186)
T 3as5_A          114 FRLGVALDNLGRFDEAIDSFKIALGLRP---------------NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS  178 (186)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHhcCc---------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence            3456666666667777766666666521               1135778899999999999999999999999888764

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.19  E-value=0.0016  Score=60.58  Aligned_cols=80  Identities=18%  Similarity=0.194  Sum_probs=45.4

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCC---------------C--hHHH------HHHHHHHHHhhhHHHHHH
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF---------------V--DDEQ------KLVKSLRVSCWLNSAACC  377 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~---------------~--~~~~------~~~~~~~~~~~~N~a~c~  377 (403)
                      ....|+.+++.|+|.+|+..|++++.........               .  ++-.      ....+....++.++|.|+
T Consensus       237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  316 (359)
T 3ieg_A          237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY  316 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            3455777888888888888888888753221000               0  0000      001112234566666666


Q ss_pred             HHccCHHHHHHHHHHHHhccccc
Q 015659          378 LKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       378 lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      .+++++.+|+..++++++++|.+
T Consensus       317 ~~~g~~~~A~~~~~~a~~~~p~~  339 (359)
T 3ieg_A          317 LIEEMYDEAIQDYEAAQEHNEND  339 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCC
Confidence            66666666666666666666654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.17  E-value=0.00043  Score=65.45  Aligned_cols=80  Identities=15%  Similarity=-0.009  Sum_probs=41.1

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCC-------------CCChHHH------HHHHHHHHHhhhHHHHHHHHcc
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-------------SFVDDEQ------KLVKSLRVSCWLNSAACCLKLK  381 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-------------~~~~~~~------~~~~~~~~~~~~N~a~c~lkl~  381 (403)
                      +...|..+++.|+|.+|+..|++++..-....             +..++-.      ..+.+....++.|++.|+.+++
T Consensus        68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  147 (365)
T 4eqf_A           68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS  147 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccc
Confidence            44456666777777777777777776521100             0000000      0001112345666666666666


Q ss_pred             CHHHHHHHHHHHHhccccc
Q 015659          382 DYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       382 ~~~~ai~~~~~aL~~dp~~  400 (403)
                      ++.+|+..++++++++|.+
T Consensus       148 ~~~~A~~~~~~al~~~p~~  166 (365)
T 4eqf_A          148 HQQDACEALKNWIKQNPKY  166 (365)
T ss_dssp             CHHHHHHHHHHHHHHCHHH
T ss_pred             cHHHHHHHHHHHHHhCccc
Confidence            6666666666666666554

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.16  E-value=0.00037  Score=62.73  Aligned_cols=34  Identities=9%  Similarity=-0.061  Sum_probs=26.7

Q ss_pred             HhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          368 SCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       368 ~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      .++.|+|.|+++++++++|+..++++++++|.+.
T Consensus        75 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~  108 (272)
T 3u4t_A           75 ADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL  108 (272)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH
Confidence            3467888888888888888888888888887764

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.15  E-value=0.00082  Score=58.10  Aligned_cols=29  Identities=14%  Similarity=0.153  Sum_probs=19.1

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADC  347 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~  347 (403)
                      ..+...|..++..|+|.+|+..|++++..
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~   37 (225)
T 2vq2_A            9 NIKTQLAMEYMRGQDYRQATASIEDALKS   37 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            34455666667777777777777777664

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.14  E-value=0.00067  Score=65.85  Aligned_cols=84  Identities=17%  Similarity=0.122  Sum_probs=47.6

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCC-------------CCChHHHH------HHHHHHHHhhhHHHHHH
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-------------SFVDDEQK------LVKSLRVSCWLNSAACC  377 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-------------~~~~~~~~------~~~~~~~~~~~N~a~c~  377 (403)
                      .+..+...|+.+++.|+|.+|+..|++++.......             +..++-..      ...+....++.+++.|+
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  104 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL  104 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            456667778888888899999999988887521100             00000000      00111234555666666


Q ss_pred             HHccCHHHHHHHHHHHHhccccc
Q 015659          378 LKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       378 lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      .+++++.+|+..++++++++|.+
T Consensus       105 ~~~g~~~~A~~~~~~~~~~~~~~  127 (450)
T 2y4t_A          105 LKQGKLDEAEDDFKKVLKSNPSE  127 (450)
T ss_dssp             HHTTCHHHHHHHHHHHHTSCCCH
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCC
Confidence            66666666666666666666544

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.13  E-value=0.00036  Score=62.81  Aligned_cols=66  Identities=20%  Similarity=0.219  Sum_probs=52.5

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      +...|.-+++.|+|.+|+..|++++..-..               ...++.|+|.|++++++|++|+..++++|+++|.+
T Consensus        77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  141 (272)
T 3u4t_A           77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTT---------------RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD  141 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------------CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCcc---------------cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc
Confidence            456788888888999999999888886221               23478889999999999999999999998888865


Q ss_pred             C
Q 015659          401 R  401 (403)
Q Consensus       401 ~  401 (403)
                      .
T Consensus       142 ~  142 (272)
T 3u4t_A          142 P  142 (272)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.12  E-value=0.00016  Score=60.86  Aligned_cols=57  Identities=11%  Similarity=0.126  Sum_probs=48.7

Q ss_pred             hcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHH----------HHHHHHHHHHhcccc
Q 015659          330 KNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ----------GAIELCSKVIVEREA  399 (403)
Q Consensus       330 k~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~----------~ai~~~~~aL~~dp~  399 (403)
                      +.+.|+.|+..|++|+.+               .+.....+.|++.|++++++++          +||..+++||+++|.
T Consensus        14 r~~~feeA~~~~~~Ai~l---------------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~   78 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKS---------------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK   78 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHhHHHHHHHHHHHHHHH---------------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC
Confidence            446899999999999997               3333568999999999998764          999999999999998


Q ss_pred             cC
Q 015659          400 AR  401 (403)
Q Consensus       400 ~~  401 (403)
                      ++
T Consensus        79 ~~   80 (158)
T 1zu2_A           79 KD   80 (158)
T ss_dssp             CH
T ss_pred             cH
Confidence            75

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.12  E-value=0.00054  Score=63.58  Aligned_cols=55  Identities=16%  Similarity=0.151  Sum_probs=41.3

Q ss_pred             CcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          332 GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       332 ~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      |+|++|+..|++++...               +-...+++|+|.|++++|+|++|+..++++|+++|.|+
T Consensus       180 ~~~~eA~~~~~~~l~~~---------------p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~  234 (291)
T 3mkr_A          180 EKLQDAYYIFQEMADKC---------------SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP  234 (291)
T ss_dssp             THHHHHHHHHHHHHHHS---------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hHHHHHHHHHHHHHHhC---------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            55555555555555541               11245789999999999999999999999999999875

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.11  E-value=0.0017  Score=63.95  Aligned_cols=77  Identities=14%  Similarity=0.078  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHH
Q 015659          314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV  393 (403)
Q Consensus       314 ~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~a  393 (403)
                      .+..+...-+.+...-+.|+|.+|...|++++.+....-+.+       ++.....++|+|.+|..+|+|++|+..+.++
T Consensus       294 ~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~-------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a  366 (433)
T 3qww_A          294 MVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDS-------NVYMLHMMYQAMGVCLYMQDWEGALKYGQKI  366 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTT-------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChh-------chHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            344555555666666678999999999999999876543333       4556789999999999999999999999999


Q ss_pred             Hhcc
Q 015659          394 IVER  397 (403)
Q Consensus       394 L~~d  397 (403)
                      |++-
T Consensus       367 L~i~  370 (433)
T 3qww_A          367 IKPY  370 (433)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9763

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.11  E-value=0.00051  Score=68.46  Aligned_cols=67  Identities=19%  Similarity=0.118  Sum_probs=58.4

Q ss_pred             HHHHHHHhhHhhhcCcH-HHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          318 AGRKKEEGNLLFKNGKY-ERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~-~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      +..+...|..++..|+| .+|+..|++|+++-               +....+++|+|.||+++++|.+|+..++++|++
T Consensus       102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~---------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~  166 (474)
T 4abn_A          102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLE---------------PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH  166 (474)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHhhC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            34456789999999999 99999999999972               122458999999999999999999999999999


Q ss_pred             ccc
Q 015659          397 REA  399 (403)
Q Consensus       397 dp~  399 (403)
                      +|.
T Consensus       167 ~p~  169 (474)
T 4abn_A          167 CKN  169 (474)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            986

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=97.09  E-value=0.00085  Score=60.48  Aligned_cols=72  Identities=19%  Similarity=0.153  Sum_probs=60.3

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHH--------ccCHHHHHHH
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK--------LKDYQGAIEL  389 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lk--------l~~~~~ai~~  389 (403)
                      ...+...|..+|+.|+|..|+..|+++++.....+            ....++.+++.|+++        ++++.+|+..
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~------------~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~  119 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP------------RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEA  119 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT------------THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc------------hhHHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence            34556789999999999999999999999732211            223578999999999        9999999999


Q ss_pred             HHHHHhcccccC
Q 015659          390 CSKVIVEREAAR  401 (403)
Q Consensus       390 ~~~aL~~dp~~~  401 (403)
                      ++++|+.+|.+.
T Consensus       120 ~~~~l~~~p~~~  131 (261)
T 3qky_A          120 FQLFIDRYPNHE  131 (261)
T ss_dssp             HHHHHHHCTTCT
T ss_pred             HHHHHHHCcCch
Confidence            999999999864

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.08  E-value=0.0013  Score=65.92  Aligned_cols=74  Identities=8%  Similarity=-0.095  Sum_probs=62.3

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      .+..+...|..+...|+|++|...|+++|.+....-+.+       ++.....++|||..|..+|+|++|+..+.+||++
T Consensus       350 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-------Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i  422 (490)
T 3n71_A          350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN-------NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI  422 (490)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            455566778899999999999999999999876533333       4556789999999999999999999999999976


Q ss_pred             c
Q 015659          397 R  397 (403)
Q Consensus       397 d  397 (403)
                      -
T Consensus       423 ~  423 (490)
T 3n71_A          423 L  423 (490)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.07  E-value=0.00065  Score=64.22  Aligned_cols=28  Identities=11%  Similarity=-0.088  Sum_probs=24.9

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADC  347 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~  347 (403)
                      .+...|..+++.|+|.+|+..|++++.+
T Consensus       101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~  128 (365)
T 4eqf_A          101 AWQFLGITQAENENEQAAIVALQRCLEL  128 (365)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            4567799999999999999999999996

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.07  E-value=0.00056  Score=68.16  Aligned_cols=69  Identities=20%  Similarity=0.045  Sum_probs=57.4

Q ss_pred             HHHHhhHhhhc--------CcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHH
Q 015659          321 KKEEGNLLFKN--------GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK  392 (403)
Q Consensus       321 ~k~~Gn~~fk~--------~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~  392 (403)
                      +...|+.++..        |+|++|+..|++|+.+-..            ......+++|+|.||.++++|++|+..+++
T Consensus       216 ~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  283 (474)
T 4abn_A          216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK------------ASSNPDLHLNRATLHKYEESYGEALEGFSQ  283 (474)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG------------GGGCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC------------cccCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            44567788777        9999999999999997210            003356899999999999999999999999


Q ss_pred             HHhcccccC
Q 015659          393 VIVEREAAR  401 (403)
Q Consensus       393 aL~~dp~~~  401 (403)
                      +|+++|.+.
T Consensus       284 al~l~p~~~  292 (474)
T 4abn_A          284 AAALDPAWP  292 (474)
T ss_dssp             HHHHCTTCH
T ss_pred             HHHhCCCCH
Confidence            999999874

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.07  E-value=0.00076  Score=52.78  Aligned_cols=62  Identities=29%  Similarity=0.433  Sum_probs=42.2

Q ss_pred             HhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       324 ~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      .|..++..+++.+|+..|++++....               ....++.+++.++.++++|.+|+..++++++.+|.+
T Consensus        41 ~a~~~~~~~~~~~A~~~~~~~~~~~~---------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  102 (136)
T 2fo7_A           41 LGNAYYKQGDYDEAIEYYQKALELDP---------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  102 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHCC---------------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence            34445555666666666666655411               113467888888888888999988888888887754

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.05  E-value=0.00066  Score=63.89  Aligned_cols=27  Identities=22%  Similarity=0.191  Sum_probs=18.3

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADC  347 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~  347 (403)
                      +...|..+++.|+|.+|+..|++++..
T Consensus        67 ~~~~~~~~~~~g~~~~A~~~~~~al~~   93 (368)
T 1fch_A           67 PFEEGLRRLQEGDLPNAVLLFEAAVQQ   93 (368)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            344566677777777777777777764

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=97.05  E-value=0.0023  Score=61.15  Aligned_cols=71  Identities=15%  Similarity=0.003  Sum_probs=54.0

Q ss_pred             HHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIV  395 (403)
Q Consensus       316 ~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~  395 (403)
                      ..+..+...|..++..|+|.+|+..|++|+.+......         ......++.|+|.||.+++++++|+.++++||+
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN---------DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34556667899999999999999999999998643211         224456777888888888888888888888877

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.05  E-value=0.0012  Score=59.09  Aligned_cols=73  Identities=15%  Similarity=0.030  Sum_probs=59.9

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      .+..+...|..++..|+|.+|+..|++|+.+.......+       .+....++.|+|.|++++++|++|+..+++++++
T Consensus        84 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  156 (283)
T 3edt_B           84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF-------HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI  156 (283)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            345567789999999999999999999999864321111       2345678999999999999999999999999998

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.05  E-value=0.0016  Score=63.07  Aligned_cols=80  Identities=18%  Similarity=0.192  Sum_probs=46.9

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCC-----------------CChHHHHH------HHHHHHHhhhHHHHHH
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS-----------------FVDDEQKL------VKSLRVSCWLNSAACC  377 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~-----------------~~~~~~~~------~~~~~~~~~~N~a~c~  377 (403)
                      ....|+.+++.|+|.+|+..|++++........                 ..++-...      +.+....++.+++.|+
T Consensus       260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  339 (450)
T 2y4t_A          260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY  339 (450)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            345589999999999999999999886322100                 00000000      1111234566666666


Q ss_pred             HHccCHHHHHHHHHHHHhccccc
Q 015659          378 LKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       378 lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      .++++|.+|+..++++++++|.+
T Consensus       340 ~~~~~~~~A~~~~~~al~~~p~~  362 (450)
T 2y4t_A          340 LIEEMYDEAIQDYETAQEHNEND  362 (450)
T ss_dssp             HHTTCHHHHHHHHHHHHTTSSSC
T ss_pred             HHhcCHHHHHHHHHHHHHhCcch
Confidence            66666666666666666666654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=97.04  E-value=0.0023  Score=61.07  Aligned_cols=71  Identities=17%  Similarity=0.154  Sum_probs=55.6

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      .+..+...|..++..|+|.+|+..|++|+.+......         ......++.|+|.||.++++|++|+.++++||++
T Consensus       183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  253 (383)
T 3ulq_A          183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ---------PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV  253 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            4455667789999999999999999999998654311         3344567888888888888888888888888884

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.04  E-value=0.0031  Score=53.71  Aligned_cols=71  Identities=8%  Similarity=0.052  Sum_probs=60.9

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      .+..+...|..++..|+|.+|+..|++|+.+......         ......++.|+|.++..+++|.+|+..+.+++++
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   95 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---------HTAEHRALHQVGMVERMAGNWDAARRCFLEEREL   95 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC---------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4556677899999999999999999999998765321         3445678999999999999999999999999988

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.04  E-value=0.002  Score=59.36  Aligned_cols=74  Identities=16%  Similarity=0.156  Sum_probs=60.2

Q ss_pred             HHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc-CHHHHHHHHHHHH
Q 015659          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-DYQGAIELCSKVI  394 (403)
Q Consensus       316 ~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~-~~~~ai~~~~~aL  394 (403)
                      ..+..+...|..+++.|+|++|+..|++|+.+......         ......++.|++.||.+++ .+++|+.++.+||
T Consensus       194 ~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS---------MALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB---------CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc---------HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            34556678899999999999999999999998643221         1234679999999999999 5799999999999


Q ss_pred             hccc
Q 015659          395 VERE  398 (403)
Q Consensus       395 ~~dp  398 (403)
                      .+-.
T Consensus       265 ~i~~  268 (293)
T 3u3w_A          265 FFFD  268 (293)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8643

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.02  E-value=0.0017  Score=58.09  Aligned_cols=75  Identities=21%  Similarity=0.176  Sum_probs=60.6

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      +..+...|..++..|+|.+|+..|++++.++......+       .+....++.|+|.|++++++|++|+..+++++++.
T Consensus       127 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  199 (283)
T 3edt_B          127 AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD-------DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA  199 (283)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            44456788999999999999999999999864422222       23456789999999999999999999999999885


Q ss_pred             cc
Q 015659          398 EA  399 (403)
Q Consensus       398 p~  399 (403)
                      |.
T Consensus       200 ~~  201 (283)
T 3edt_B          200 HE  201 (283)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.00  E-value=0.001  Score=62.51  Aligned_cols=82  Identities=15%  Similarity=0.187  Sum_probs=46.1

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCC-------------CCChHHHH------HHHHHHHHhhhHHHHHHHH
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-------------SFVDDEQK------LVKSLRVSCWLNSAACCLK  379 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-------------~~~~~~~~------~~~~~~~~~~~N~a~c~lk  379 (403)
                      ..+...|.-+++.|+|.+|+..|++++..-....             +..++-..      .+.+....++.|+|.|+++
T Consensus       218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  297 (368)
T 1fch_A          218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN  297 (368)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            3345668888888999999999998888621100             00000000      0111223455666666666


Q ss_pred             ccCHHHHHHHHHHHHhccccc
Q 015659          380 LKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       380 l~~~~~ai~~~~~aL~~dp~~  400 (403)
                      +++|.+|+..++++++++|.+
T Consensus       298 ~g~~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          298 LGAHREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             HTCHHHHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhCCCC
Confidence            666666666666666666554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.00  E-value=0.0015  Score=64.23  Aligned_cols=74  Identities=8%  Similarity=-0.182  Sum_probs=62.1

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      .+..+...|..+...|+|.+|+..|++++.+.....+..       ++.....++|+|..|..+++|++|+..+.+||++
T Consensus       328 ~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~-------Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          328 QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS-------HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC-------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            445566778889999999999999999999876543333       5566789999999999999999999999999976


Q ss_pred             c
Q 015659          397 R  397 (403)
Q Consensus       397 d  397 (403)
                      -
T Consensus       401 ~  401 (429)
T 3qwp_A          401 M  401 (429)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=96.99  E-value=0.00067  Score=68.90  Aligned_cols=35  Identities=6%  Similarity=-0.175  Sum_probs=25.7

Q ss_pred             HHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          367 VSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       367 ~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      ..++.|+|.|+++++++++|+..++++|+++|.+.
T Consensus        91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  125 (568)
T 2vsy_A           91 PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEP  125 (568)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            44677777777777777777777777777777653

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=96.99  E-value=0.0013  Score=54.68  Aligned_cols=33  Identities=12%  Similarity=0.089  Sum_probs=22.2

Q ss_pred             HhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          368 SCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       368 ~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      .++.++|.++.+++++.+|+..++++++.+|.+
T Consensus       111 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~  143 (186)
T 3as5_A          111 NVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE  143 (186)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence            456666777777777777777777777666654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=96.97  E-value=0.00061  Score=62.78  Aligned_cols=67  Identities=13%  Similarity=0.108  Sum_probs=58.0

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      .+...|..+++.|+|.+|+..|++++..-..               ...++.|+|.|+.+++++.+|+..++++++++|.
T Consensus       238 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  302 (330)
T 3hym_B          238 LLNNLGHVCRKLKKYAEALDYHRQALVLIPQ---------------NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD  302 (330)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------------CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc---------------chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence            3456788899999999999999999997322               2358899999999999999999999999999997


Q ss_pred             cC
Q 015659          400 AR  401 (403)
Q Consensus       400 ~~  401 (403)
                      +.
T Consensus       303 ~~  304 (330)
T 3hym_B          303 DT  304 (330)
T ss_dssp             CH
T ss_pred             ch
Confidence            64

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=96.97  E-value=0.001  Score=67.57  Aligned_cols=33  Identities=6%  Similarity=-0.093  Sum_probs=22.4

Q ss_pred             HhhhHHHHHHHHc---cCHHHHHHHHHHHHhccccc
Q 015659          368 SCWLNSAACCLKL---KDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       368 ~~~~N~a~c~lkl---~~~~~ai~~~~~aL~~dp~~  400 (403)
                      .++.|++.|+.++   +++++|+..++++|+.+|.+
T Consensus       126 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A          126 YITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence            4666677777777   66777777777777766654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=96.94  E-value=0.00081  Score=64.20  Aligned_cols=28  Identities=21%  Similarity=0.286  Sum_probs=24.1

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADC  347 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~  347 (403)
                      .+...|+.+++.|+|.+|+..|++++.+
T Consensus        69 ~~~~lg~~~~~~g~~~~A~~~~~~al~~   96 (388)
T 1w3b_A           69 AYSNLGNVYKERGQLQEAIEHYRHALRL   96 (388)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            4567788899999999999999999886

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=96.94  E-value=0.0027  Score=55.96  Aligned_cols=67  Identities=3%  Similarity=-0.031  Sum_probs=56.5

Q ss_pred             HHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       322 k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      ...|.-+++.|+|..|+..|+++++....            .+....++.+++.|+.++|++++|+...++++...|.+
T Consensus       151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~------------~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~  217 (225)
T 2yhc_A          151 YSVAEYYTERGAWVAVVNRVEGMLRDYPD------------TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT  217 (225)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSTT------------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHCcC------------CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence            46788899999999999999999997432            12234588999999999999999999999999888865

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=96.93  E-value=0.0015  Score=57.35  Aligned_cols=33  Identities=12%  Similarity=0.112  Sum_probs=23.8

Q ss_pred             HhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          368 SCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       368 ~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      .++.++|.|++++++|++|+..++++++++|.+
T Consensus       126 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~  158 (243)
T 2q7f_A          126 DLFYMLGTVLVKLEQPKLALPYLQRAVELNEND  158 (243)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            466777777777777777777777777776654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=96.92  E-value=0.0018  Score=61.84  Aligned_cols=73  Identities=16%  Similarity=0.074  Sum_probs=60.6

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      +..+...|.-++..|+|.+|+..|++|+.+......         .+....++.|+|.|+++++++++|+..++++|++.
T Consensus       224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  294 (383)
T 3ulq_A          224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI---------LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS  294 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc---------chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            345677899999999999999999999998654321         12346789999999999999999999999999985


Q ss_pred             cc
Q 015659          398 EA  399 (403)
Q Consensus       398 p~  399 (403)
                      +.
T Consensus       295 ~~  296 (383)
T 3ulq_A          295 QK  296 (383)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=96.90  E-value=0.00092  Score=59.37  Aligned_cols=30  Identities=20%  Similarity=0.141  Sum_probs=21.8

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADC  347 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~  347 (403)
                      +..+...|..++..|+|.+|+..|++++..
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   66 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI   66 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence            555666777777777777777777777775

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=96.90  E-value=0.00075  Score=62.34  Aligned_cols=66  Identities=12%  Similarity=0.051  Sum_probs=56.2

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp  398 (403)
                      ..+...|..++..|++..|+..|++++..               .+-...++.|+|.+++++|++++|+..+++++..+|
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~---------------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p  182 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQL---------------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ  182 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHh---------------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc
Confidence            44667899999999999999999999997               222345889999999999999999999999888888


Q ss_pred             c
Q 015659          399 A  399 (403)
Q Consensus       399 ~  399 (403)
                      .
T Consensus       183 ~  183 (287)
T 3qou_A          183 D  183 (287)
T ss_dssp             S
T ss_pred             c
Confidence            4

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=96.90  E-value=0.0017  Score=56.05  Aligned_cols=62  Identities=13%  Similarity=0.011  Sum_probs=40.9

Q ss_pred             HHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       322 k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp  398 (403)
                      ...|..+++.|++.+|+..|++++....               ....++.++|.|+++++++.+|+..++++++++|
T Consensus       117 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  178 (225)
T 2vq2_A          117 LNKGICSAKQGQFGLAEAYLKRSLAAQP---------------QFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE  178 (225)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHST---------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            3445555666666666666666665411               1134677788888888888888888888887777

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=96.88  E-value=0.0016  Score=57.06  Aligned_cols=35  Identities=9%  Similarity=0.061  Sum_probs=28.0

Q ss_pred             HHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          367 VSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       367 ~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      ..++.++|.+++++++|++|+..++++++.+|.+.
T Consensus       159 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  193 (243)
T 2q7f_A          159 TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHA  193 (243)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Confidence            44778888888888888888888888888887653

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=96.86  E-value=0.00035  Score=73.00  Aligned_cols=81  Identities=15%  Similarity=0.069  Sum_probs=60.1

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccC--------------CCCCh-HHH---HHHHHHHHHhhhHHHHHHHHccC
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSED--------------GSFVD-DEQ---KLVKSLRVSCWLNSAACCLKLKD  382 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~--------------~~~~~-~~~---~~~~~~~~~~~~N~a~c~lkl~~  382 (403)
                      +...|..+++.|+|++|+..|++|+++-...              ....+ +..   -++.+....+++|+|.|++++++
T Consensus       470 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~~~~~~~al~~~P~~~~a~~~lg~~~~~~g~  549 (681)
T 2pzi_A          470 VWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDEHKFYQTVWSTNDGVISAAFGLARARSAEGD  549 (681)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCTTCHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhCCchHHHHHHHHHHHHHcCC
Confidence            4467899999999999999999999863211              01111 111   12234445689999999999999


Q ss_pred             HHHHHHHHHHHHhcccccC
Q 015659          383 YQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       383 ~~~ai~~~~~aL~~dp~~~  401 (403)
                      +++|+.++++||+++|.++
T Consensus       550 ~~~A~~~~~~al~l~P~~~  568 (681)
T 2pzi_A          550 RVGAVRTLDEVPPTSRHFT  568 (681)
T ss_dssp             HHHHHHHHHTSCTTSTTHH
T ss_pred             HHHHHHHHHhhcccCcccH
Confidence            9999999999999999764

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=96.84  E-value=0.0026  Score=60.81  Aligned_cols=71  Identities=11%  Similarity=0.030  Sum_probs=59.8

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      ..-.|..++..|+|.+|+..|++|+.++...+.         ......++.|+|.+|..++++..|+.++.+||++.+.+
T Consensus       104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~  174 (378)
T 3q15_A          104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD---------DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH  174 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC---------hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence            345788899999999999999999998765321         23456799999999999999999999999999987653

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=96.84  E-value=0.0031  Score=57.96  Aligned_cols=70  Identities=17%  Similarity=0.164  Sum_probs=56.9

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHH-HHHHHHHHhcc
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGA-IELCSKVIVER  397 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~a-i~~~~~aL~~d  397 (403)
                      ..+...|..+++.|+|.+|+..|++|+.+......         ......+++|+|.||.+++++++| ..++++|+.+.
T Consensus       197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~---------~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS---------MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB---------CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc---------HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            45667899999999999999999999998532111         112466899999999999999999 77799998764

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.82  E-value=0.0018  Score=52.10  Aligned_cols=36  Identities=14%  Similarity=0.214  Sum_probs=33.2

Q ss_pred             HHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          366 RVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       366 ~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      +.-|++.+|..++|+++|.+|+.+|+.+|+.+|.|.
T Consensus        73 ~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~  108 (126)
T 1nzn_A           73 QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN  108 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence            445888999999999999999999999999999984

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=96.82  E-value=0.0056  Score=52.05  Aligned_cols=73  Identities=11%  Similarity=0.052  Sum_probs=59.1

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      .+..+...|..++..|+|.+|+..|++++.+......         ......++.|+|.+++++++|.+|+..+++++++
T Consensus       106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  176 (203)
T 3gw4_A          106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD---------QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI  176 (203)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc---------hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            3444567788999999999999999999998643221         2334567899999999999999999999999987


Q ss_pred             cc
Q 015659          397 RE  398 (403)
Q Consensus       397 dp  398 (403)
                      -.
T Consensus       177 ~~  178 (203)
T 3gw4_A          177 FA  178 (203)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.82  E-value=0.0046  Score=52.01  Aligned_cols=74  Identities=18%  Similarity=0.142  Sum_probs=49.4

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCC--------hHHHH--HHHHHHHHhhhHHHHHHHHccCHHHHH
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFV--------DDEQK--LVKSLRVSCWLNSAACCLKLKDYQGAI  387 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~--------~~~~~--~~~~~~~~~~~N~a~c~lkl~~~~~ai  387 (403)
                      +..+--.|+.+|..++|.+|...|++||.+........        .....  .-..--+-+.+.+|.||++++++.+||
T Consensus        63 ~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai  142 (167)
T 3ffl_A           63 YQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAI  142 (167)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHH
Confidence            44455679999999999999999999999875311100        00000  000001236677999999999999999


Q ss_pred             HHHH
Q 015659          388 ELCS  391 (403)
Q Consensus       388 ~~~~  391 (403)
                      ....
T Consensus       143 ~~Le  146 (167)
T 3ffl_A          143 AILD  146 (167)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=96.81  E-value=0.002  Score=59.21  Aligned_cols=75  Identities=24%  Similarity=0.298  Sum_probs=53.6

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      +...|.-+++.|+|.+|+..|++++...........      .+....++.|+|.|+.+++++++|+..++++++++|.+
T Consensus       196 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  269 (330)
T 3hym_B          196 MHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT------VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN  269 (330)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT------TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc------ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccc
Confidence            445666777777777777777777776532111100      01123488999999999999999999999999999976


Q ss_pred             C
Q 015659          401 R  401 (403)
Q Consensus       401 ~  401 (403)
                      .
T Consensus       270 ~  270 (330)
T 3hym_B          270 A  270 (330)
T ss_dssp             S
T ss_pred             h
Confidence            4

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.81  E-value=0.0024  Score=48.51  Aligned_cols=67  Identities=10%  Similarity=0.035  Sum_probs=54.8

Q ss_pred             HHHHHHhhHhhhcCc---HHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659          319 GRKKEEGNLLFKNGK---YERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIV  395 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~---~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~  395 (403)
                      ..+-..|..+|-.++   ..+|...+++|+.+               ++.....+..++..+++.++|.+|+...+++|+
T Consensus         7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~---------------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~   71 (93)
T 3bee_A            7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQL---------------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLD   71 (93)
T ss_dssp             HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---------------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            344556777754444   79999999999997               344467888899999999999999999999999


Q ss_pred             ccccc
Q 015659          396 EREAA  400 (403)
Q Consensus       396 ~dp~~  400 (403)
                      .+|.+
T Consensus        72 ~~p~~   76 (93)
T 3bee_A           72 SNDPN   76 (93)
T ss_dssp             CCCTT
T ss_pred             hCCCC
Confidence            99973

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.80  E-value=0.0034  Score=61.79  Aligned_cols=76  Identities=11%  Similarity=0.031  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHH
Q 015659          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI  394 (403)
Q Consensus       315 ~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL  394 (403)
                      ...+..+...-..+.+.|+|.+|+..|++++......-+.+       ++.....++|+|.+|..+|+|++|+..+.++|
T Consensus       284 ~~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~-------h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L  356 (429)
T 3qwp_A          284 WKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDI-------NIYQLKVLDCAMDACINLGLLEEALFYGTRTM  356 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTT-------SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCcc-------chHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            33445555556677889999999999999998765433333       45567899999999999999999999999999


Q ss_pred             hcc
Q 015659          395 VER  397 (403)
Q Consensus       395 ~~d  397 (403)
                      ++-
T Consensus       357 ~i~  359 (429)
T 3qwp_A          357 EPY  359 (429)
T ss_dssp             HHH
T ss_pred             HhH
Confidence            763

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=96.78  E-value=0.004  Score=56.61  Aligned_cols=75  Identities=20%  Similarity=0.199  Sum_probs=60.3

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      +..+...|.-+++.|+|.+|+..|++++.+.......+       .+....++.|+|.|++++++|++|+..+++++++.
T Consensus       153 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  225 (311)
T 3nf1_A          153 AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPD-------DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA  225 (311)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTT-------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            34456678899999999999999999999865432222       23345789999999999999999999999999875


Q ss_pred             cc
Q 015659          398 EA  399 (403)
Q Consensus       398 p~  399 (403)
                      |.
T Consensus       226 ~~  227 (311)
T 3nf1_A          226 HE  227 (311)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=96.76  E-value=0.0019  Score=59.31  Aligned_cols=35  Identities=6%  Similarity=0.020  Sum_probs=25.0

Q ss_pred             HHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          367 VSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       367 ~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      ..++.++|.|+.+++++.+|+..+.++++.+|.+.
T Consensus        89 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  123 (327)
T 3cv0_A           89 IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE  123 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH
Confidence            34667777777777777777777777777777654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=96.73  E-value=0.0052  Score=58.22  Aligned_cols=75  Identities=15%  Similarity=0.086  Sum_probs=60.1

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      .+..+...|..++..|+|.+|+..|++|+.+......         .+....++.|+|.|+..+++|.+|+..+.++|++
T Consensus        46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  116 (406)
T 3sf4_A           46 LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD---------QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI  116 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc---------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3455667788888889999999999998887544211         3445678999999999999999999999999998


Q ss_pred             cccc
Q 015659          397 REAA  400 (403)
Q Consensus       397 dp~~  400 (403)
                      .|..
T Consensus       117 ~~~~  120 (406)
T 3sf4_A          117 SREL  120 (406)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            7754

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=96.71  E-value=0.0052  Score=58.71  Aligned_cols=71  Identities=14%  Similarity=0.099  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHH
Q 015659          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI  394 (403)
Q Consensus       315 ~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL  394 (403)
                      ...+..+...|..++..|+|.+|+..|++++..-..    +       ......++.+++.||+.+++|.+|+..++++|
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~----~-------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  113 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE----D-------LRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL  113 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS----C-------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc----C-------hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            455667778899999999999999999999997211    1       11223345555555555555555555555555


Q ss_pred             hc
Q 015659          395 VE  396 (403)
Q Consensus       395 ~~  396 (403)
                      ++
T Consensus       114 ~~  115 (411)
T 4a1s_A          114 TL  115 (411)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=96.70  E-value=0.0063  Score=55.54  Aligned_cols=82  Identities=16%  Similarity=0.083  Sum_probs=45.9

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCC----------------ChHHH----HH---H------HHHHHH
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF----------------VDDEQ----KL---V------KSLRVS  368 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~----------------~~~~~----~~---~------~~~~~~  368 (403)
                      +..+...|..++..|+|.+|+..|++++..-..+...                .-++.    .+   +      ......
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   84 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   84 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence            3455566777777788888888887777752110000                00000    00   0      334455


Q ss_pred             hhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          369 CWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       369 ~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      ++.++|.++..+++|.+|+..+.+++++.|.
T Consensus        85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  115 (338)
T 3ro2_A           85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRE  115 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            6666666666666666666666666666554

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=96.68  E-value=0.0039  Score=56.66  Aligned_cols=75  Identities=13%  Similarity=0.045  Sum_probs=61.9

Q ss_pred             HHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIV  395 (403)
Q Consensus       316 ~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~  395 (403)
                      ..+..+...|..++..|+|.+|+..|++++.+........       .+....++.++|.|+..+++|.+|+..+.++++
T Consensus        25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   97 (311)
T 3nf1_A           25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD-------HPDVATMLNILALVYRDQNKYKDAANLLNDALA   97 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSS-------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4566778889999999999999999999999864321111       344567899999999999999999999999998


Q ss_pred             cc
Q 015659          396 ER  397 (403)
Q Consensus       396 ~d  397 (403)
                      +-
T Consensus        98 ~~   99 (311)
T 3nf1_A           98 IR   99 (311)
T ss_dssp             HH
T ss_pred             HH
Confidence            73

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=96.65  E-value=0.0036  Score=57.36  Aligned_cols=69  Identities=13%  Similarity=0.070  Sum_probs=58.6

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      +..+-..|..+++.|+|.+|+..|++++....               ....++.++|.|+.++++|.+|+..++++++++
T Consensus        21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~   85 (327)
T 3cv0_A           21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAP---------------EREEAWRSLGLTQAENEKDGLAIIALNHARMLD   85 (327)
T ss_dssp             SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            34456778899999999999999999999621               124578899999999999999999999999999


Q ss_pred             cccC
Q 015659          398 EAAR  401 (403)
Q Consensus       398 p~~~  401 (403)
                      |.+.
T Consensus        86 ~~~~   89 (327)
T 3cv0_A           86 PKDI   89 (327)
T ss_dssp             TTCH
T ss_pred             cCCH
Confidence            8763

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=96.64  E-value=0.0064  Score=55.49  Aligned_cols=31  Identities=16%  Similarity=0.116  Sum_probs=19.8

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHh
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCV  348 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l  348 (403)
                      +..+...|..++..|+|.+|+..|++++.+.
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   73 (338)
T 3ro2_A           43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLA   73 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            3445556666666777777777776666654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=96.64  E-value=0.0021  Score=61.26  Aligned_cols=27  Identities=15%  Similarity=0.267  Sum_probs=19.6

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADC  347 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~  347 (403)
                      ....|..+++.|++.+|+..|++++..
T Consensus       240 ~~~l~~~~~~~g~~~~A~~~~~~al~~  266 (388)
T 1w3b_A          240 HGNLACVYYEQGLIDLAIDTYRRAIEL  266 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            345677777778888888888777774

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=96.63  E-value=0.0034  Score=55.57  Aligned_cols=61  Identities=16%  Similarity=0.082  Sum_probs=30.9

Q ss_pred             HhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       324 ~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      .|..+++.|++++|+..|++++.....               ...++.++|.++++++++.+|+..+.++++.+|.
T Consensus       147 la~~~~~~g~~~~A~~~~~~~~~~~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  207 (252)
T 2ho1_A          147 LGLVSLQMKKPAQAKEYFEKSLRLNRN---------------QPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ  207 (252)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSC---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCcc---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            344445555555555555555543110               1234455555555555555555555555555553

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=96.56  E-value=0.0075  Score=57.09  Aligned_cols=73  Identities=16%  Similarity=0.155  Sum_probs=52.2

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      +..+...|.-++..|+|.+|+..|++|+.+......         ......++.|+|.+++++++|++|+..+++++++.
T Consensus       187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  257 (406)
T 3sf4_A          187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA  257 (406)
T ss_dssp             HHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC---------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            334567788999999999999999999998654321         22334567777777777777777777777777665


Q ss_pred             cc
Q 015659          398 EA  399 (403)
Q Consensus       398 p~  399 (403)
                      |.
T Consensus       258 ~~  259 (406)
T 3sf4_A          258 RQ  259 (406)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=96.54  E-value=0.0029  Score=58.55  Aligned_cols=66  Identities=14%  Similarity=0.055  Sum_probs=56.0

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHH-HHHHHHHHHhcccc
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQG-AIELCSKVIVEREA  399 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~-ai~~~~~aL~~dp~  399 (403)
                      +...|..+++.|+|++|...|++|+..-               +....++.|++.++..+|++.+ +....+++++++|.
T Consensus       203 ~~~la~~~~~~g~~~eA~~~l~~al~~~---------------p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~  267 (291)
T 3mkr_A          203 LNGQAACHMAQGRWEAAEGVLQEALDKD---------------SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS  267 (291)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence            4567888999999999999999999972               2224578999999999999987 56788999999998


Q ss_pred             cC
Q 015659          400 AR  401 (403)
Q Consensus       400 ~~  401 (403)
                      ++
T Consensus       268 ~~  269 (291)
T 3mkr_A          268 HP  269 (291)
T ss_dssp             CH
T ss_pred             Ch
Confidence            75

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=96.48  E-value=0.0018  Score=50.40  Aligned_cols=51  Identities=2%  Similarity=-0.028  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          336 RAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       336 ~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      .|+..|++++..-..               ...++.|+|.+++++++|.+|+..+.++|+++|.+.
T Consensus         3 ~a~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~   53 (115)
T 2kat_A            3 AITERLEAMLAQGTD---------------NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS   53 (115)
T ss_dssp             CHHHHHHHHHTTTCC---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHhCCC---------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcH
Confidence            578889999886211               235889999999999999999999999999999764

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=96.47  E-value=0.0035  Score=63.25  Aligned_cols=68  Identities=15%  Similarity=-0.025  Sum_probs=58.6

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp  398 (403)
                      ..+...|..+++.|++++|+..|++++..-..               ...++.+++.||.++|+|++|+..++++|+++|
T Consensus       517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p  581 (597)
T 2xpi_A          517 ATWANLGHAYRKLKMYDAAIDALNQGLLLSTN---------------DANVHTAIALVYLHKKIPGLAITHLHESLAISP  581 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---------------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence            34556788899999999999999999997211               135889999999999999999999999999999


Q ss_pred             ccC
Q 015659          399 AAR  401 (403)
Q Consensus       399 ~~~  401 (403)
                      .+.
T Consensus       582 ~~~  584 (597)
T 2xpi_A          582 NEI  584 (597)
T ss_dssp             TCH
T ss_pred             CCh
Confidence            875

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=96.39  E-value=0.0034  Score=61.36  Aligned_cols=74  Identities=9%  Similarity=-0.067  Sum_probs=55.3

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc--CHHHHHHHHHHHHhccc
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK--DYQGAIELCSKVIVERE  398 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~--~~~~ai~~~~~aL~~dp  398 (403)
                      +...|..++..|+|.+|+..|++++.+..........       ....++.|++.++++++  +|++|+..+++||+++|
T Consensus        97 ~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~-------~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p  169 (472)
T 4g1t_A           97 WGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRI-------ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP  169 (472)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCC-------CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccch-------hhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC
Confidence            4467888999999999999999999986543221111       11236778888887765  58899999999999998


Q ss_pred             ccC
Q 015659          399 AAR  401 (403)
Q Consensus       399 ~~~  401 (403)
                      .|.
T Consensus       170 ~~~  172 (472)
T 4g1t_A          170 KNP  172 (472)
T ss_dssp             TCH
T ss_pred             CCH
Confidence            764

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=96.39  E-value=0.0043  Score=61.03  Aligned_cols=65  Identities=15%  Similarity=0.106  Sum_probs=50.8

Q ss_pred             eEEEEeeccceEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEE
Q 015659          214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYY  293 (403)
Q Consensus       214 v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f  293 (403)
                      ++|+|. .||..|+++   .+.++.|.+|.+.  + |+.+|.||++|+...|.+..                 +|.+..|
T Consensus       163 id~~~~-~dG~~~~~~---~~~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~vtF-----------------aGk~a~F  218 (433)
T 3gty_X          163 VNMEVY-NEEGKKLTS---REYEYVISEDEDR--P-FVKDLVGKKKGDVVEIEREY-----------------EGKKYTY  218 (433)
T ss_dssp             EEEEEE-CTTSCEEEE---EEEEEECCSSCCC--T-THHHHTTCCTTCEEEEEEEE-----------------TTEEEEE
T ss_pred             EEEEEE-ECCEECcCC---CCCCeEEEecCCc--h-HHHHhCCCCCCceEEEEEee-----------------CCCeEEE
Confidence            345544 367778765   2467888899877  4 99999999999999999843                 3458999


Q ss_pred             EEEEeeecc
Q 015659          294 EVEMMDFIK  302 (403)
Q Consensus       294 ~iel~~i~~  302 (403)
                      .|+|.+|..
T Consensus       219 ~VtV~~Ik~  227 (433)
T 3gty_X          219 KLEVEEVYK  227 (433)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            999999975

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.38  E-value=0.0028  Score=51.19  Aligned_cols=36  Identities=19%  Similarity=0.356  Sum_probs=32.8

Q ss_pred             HHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          366 RVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       366 ~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      +.-|++-+|..+.|+|+|..|+.+|+.+|+.+|.|.
T Consensus        77 ~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~  112 (134)
T 3o48_A           77 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  112 (134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence            345888899999999999999999999999999984

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=96.35  E-value=0.012  Score=56.06  Aligned_cols=72  Identities=13%  Similarity=0.087  Sum_probs=60.9

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      .+..+...|..++..|+|.+|+..|++++.+......         ......++.|+|.+|..+++|.+|+..+.+++++
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  155 (411)
T 4a1s_A           85 LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND---------RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTL  155 (411)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC---------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3455677899999999999999999999998654321         3456779999999999999999999999999988


Q ss_pred             c
Q 015659          397 R  397 (403)
Q Consensus       397 d  397 (403)
                      .
T Consensus       156 ~  156 (411)
T 4a1s_A          156 A  156 (411)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=96.28  E-value=0.005  Score=60.44  Aligned_cols=67  Identities=12%  Similarity=-0.008  Sum_probs=57.9

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp  398 (403)
                      ..+...|..+++.|+|.+|+..|++++..-.               ....++.++|.|++++++|++|+..+++++.++|
T Consensus        40 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  104 (514)
T 2gw1_A           40 VFYSNLSACYVSVGDLKKVVEMSTKALELKP---------------DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD  104 (514)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS---------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHhccCh---------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            3466779999999999999999999999621               1246889999999999999999999999999998


Q ss_pred             cc
Q 015659          399 AA  400 (403)
Q Consensus       399 ~~  400 (403)
                      .+
T Consensus       105 ~~  106 (514)
T 2gw1_A          105 FN  106 (514)
T ss_dssp             CC
T ss_pred             Cc
Confidence            54

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.28  E-value=0.0019  Score=52.87  Aligned_cols=35  Identities=17%  Similarity=0.321  Sum_probs=32.4

Q ss_pred             HHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          367 VSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       367 ~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      --|++.+|..+.|+++|.+|+.+|+..|+.+|.|.
T Consensus        77 RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~  111 (144)
T 1y8m_A           77 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  111 (144)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence            34888899999999999999999999999999984

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=96.20  E-value=0.0057  Score=60.57  Aligned_cols=28  Identities=21%  Similarity=0.363  Sum_probs=20.8

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADC  347 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~  347 (403)
                      .+...|..+++.|+|.+|+..|++++..
T Consensus       312 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~  339 (537)
T 3fp2_A          312 TYYHRGQMYFILQDYKNAKEDFQKAQSL  339 (537)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            3456677777888888888888888775

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=95.66  E-value=0.0066  Score=55.85  Aligned_cols=80  Identities=11%  Similarity=-0.082  Sum_probs=58.5

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc--------------CCCCChHHHH------HHHHHHHHhhhHHHHHHHH
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSE--------------DGSFVDDEQK------LVKSLRVSCWLNSAACCLK  379 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~--------------~~~~~~~~~~------~~~~~~~~~~~N~a~c~lk  379 (403)
                      .+...|..+.+.|++++|+..|++++..-..              .....+ ...      ...+-...+++|+|.++++
T Consensus       153 a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~-a~~~l~~al~~~P~~~~~~~~la~~l~~  231 (287)
T 3qou_A          153 IGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTP-EIQQLQQQVAENPEDAALATQLALQLHQ  231 (287)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCH-HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCc-cHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            4567889999999999999999887653110              000110 111      1123345689999999999


Q ss_pred             ccCHHHHHHHHHHHHhccccc
Q 015659          380 LKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       380 l~~~~~ai~~~~~aL~~dp~~  400 (403)
                      ++++++|+..+.++|+.+|.+
T Consensus       232 ~g~~~~A~~~l~~~l~~~p~~  252 (287)
T 3qou_A          232 VGRNEEALELLFGHLRXDLTA  252 (287)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTG
T ss_pred             cccHHHHHHHHHHHHhccccc
Confidence            999999999999999999987

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=95.62  E-value=0.034  Score=52.45  Aligned_cols=72  Identities=14%  Similarity=-0.002  Sum_probs=52.1

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      +...|..++..|+|..|+..|++++..........       .+....++.|++.++..+|++++|+..+.++|++.|.
T Consensus        96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A           96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ-------LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT-------STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc-------CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            45578888899999999999999999764322210       0123456778888888888888888888888877653

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=95.54  E-value=0.02  Score=57.55  Aligned_cols=27  Identities=15%  Similarity=0.117  Sum_probs=22.1

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADC  347 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~  347 (403)
                      ....|+-+++.|++++|+..|++++..
T Consensus       376 ~~~l~~~~~~~g~~~~A~~~~~~~~~~  402 (597)
T 2xpi_A          376 WLAVGIYYLCVNKISEARRYFSKSSTM  402 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            445678888899999999999988875

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=95.52  E-value=0.013  Score=52.85  Aligned_cols=62  Identities=19%  Similarity=0.190  Sum_probs=40.4

Q ss_pred             HHhhHhhh----cCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHH----ccCHHHHHHHHHHHH
Q 015659          323 EEGNLLFK----NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK----LKDYQGAIELCSKVI  394 (403)
Q Consensus       323 ~~Gn~~fk----~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lk----l~~~~~ai~~~~~aL  394 (403)
                      ..|.-+++    .+++.+|+..|++|+..-                 ....+.|++.+|.+    .+++++|+..+++|+
T Consensus       187 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----------------~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~  249 (273)
T 1ouv_A          187 NAGNMYHHGEGATKNFKEALARYSKACELE-----------------NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGC  249 (273)
T ss_dssp             HHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-----------------CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCccHHHHHHHHHHHHhCC-----------------CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence            34444555    556666666666655530                 02367778888888    888888888888888


Q ss_pred             hcccccC
Q 015659          395 VEREAAR  401 (403)
Q Consensus       395 ~~dp~~~  401 (403)
                      +++|.++
T Consensus       250 ~~~~~~a  256 (273)
T 1ouv_A          250 KLGAKGA  256 (273)
T ss_dssp             HHTCHHH
T ss_pred             HcCCHHH
Confidence            8777654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=95.49  E-value=0.015  Score=48.77  Aligned_cols=81  Identities=14%  Similarity=0.021  Sum_probs=56.7

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhc------------c--CCCCChHHHH------HHHHHHHHhhhHHHHHHH
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVS------------E--DGSFVDDEQK------LVKSLRVSCWLNSAACCL  378 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~------------~--~~~~~~~~~~------~~~~~~~~~~~N~a~c~l  378 (403)
                      ......|.-+++.|++++|+..|++++..-.            .  .....+ ...      ...+-...+++|+|.|+.
T Consensus        41 ~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~-a~~~~~~al~~~P~~~~~~~~la~~~~  119 (176)
T 2r5s_A           41 DVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESP-ELKRLEQELAANPDNFELACELAVQYN  119 (176)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCH-HHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccch-HHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3455678888889999999998888765411            0  000000 011      112233568999999999


Q ss_pred             HccCHHHHHHHHHHHHhccccc
Q 015659          379 KLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       379 kl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      ++|++++|+..+.++|+++|..
T Consensus       120 ~~g~~~~A~~~~~~~l~~~p~~  141 (176)
T 2r5s_A          120 QVGRDEEALELLWNILKVNLGA  141 (176)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTT
T ss_pred             HcccHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999875

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=95.37  E-value=0.016  Score=43.91  Aligned_cols=35  Identities=14%  Similarity=0.014  Sum_probs=32.6

Q ss_pred             HHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          367 VSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       367 ~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      ..++.|+|.|++++++|++|+..++++|+++|.+.
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~   41 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYV   41 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence            45889999999999999999999999999999875

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.33  E-value=0.016  Score=55.68  Aligned_cols=78  Identities=14%  Similarity=0.068  Sum_probs=55.6

Q ss_pred             HHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCCh--HHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVD--DEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       322 k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~--~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      -++|..+++.|+|.+|+..|.++++..........  ............++.|++.+|.++++|++|+....+++.+.+.
T Consensus         8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~   87 (434)
T 4b4t_Q            8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQ   87 (434)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            34577788889999999999999997543221100  0001112334567899999999999999999999999876543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=95.19  E-value=0.03  Score=51.69  Aligned_cols=53  Identities=9%  Similarity=0.182  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          334 YERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       334 ~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      +.+|+..|++|+..+....              ..++.|++..+.+++++++|+..++++|+++|.+
T Consensus        80 ~~~A~~~~~rAl~~~~p~~--------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~  132 (308)
T 2ond_A           80 SDEAANIYERAISTLLKKN--------------MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID  132 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC
T ss_pred             hHHHHHHHHHHHHHhCccc--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccC
Confidence            3899999999999433211              2345555555555555555555555555555543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=95.17  E-value=0.036  Score=49.79  Aligned_cols=27  Identities=30%  Similarity=0.367  Sum_probs=17.8

Q ss_pred             HHHHhhHhhh----cCcHHHHHHHHHHHHHH
Q 015659          321 KKEEGNLLFK----NGKYERAGKKYNKAADC  347 (403)
Q Consensus       321 ~k~~Gn~~fk----~~~~~~A~~~Y~~al~~  347 (403)
                      ....|.-++.    .+++.+|+..|++|+..
T Consensus        77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~  107 (273)
T 1ouv_A           77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDL  107 (273)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCCcccCHHHHHHHHHHHHHc
Confidence            3445666666    77777777777777664

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=95.15  E-value=0.035  Score=41.12  Aligned_cols=42  Identities=29%  Similarity=0.176  Sum_probs=36.3

Q ss_pred             cCchH-HHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc
Q 015659          309 MNNQG-KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE  350 (403)
Q Consensus       309 m~~~e-~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~  350 (403)
                      |+..+ .++.|..+-.+|.+.=+.|+|.+|+..|..|+++|..
T Consensus         1 M~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~   43 (83)
T 2v6y_A            1 MSAQVMLEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQ   43 (83)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            45555 6778888999999999999999999999999998844

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=95.00  E-value=0.024  Score=52.36  Aligned_cols=65  Identities=9%  Similarity=0.043  Sum_probs=45.5

Q ss_pred             HHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       322 k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      ...|+-+.+.|++.+|...|++|+++ ...  ..           ..++.|++.++.+++++++|+..+++|++++|.+
T Consensus       103 ~~~~~~~~~~~~~~~A~~~~~~al~~-~p~--~~-----------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~  167 (308)
T 2ond_A          103 FAYADYEESRMKYEKVHSIYNRLLAI-EDI--DP-----------TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR  167 (308)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTS-SSS--CT-----------HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhc-ccc--Cc-----------cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Confidence            34566677889999999999999985 111  00           0166777777777777777777777777776654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.86  E-value=0.066  Score=51.36  Aligned_cols=73  Identities=11%  Similarity=0.056  Sum_probs=59.7

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      +......|+-++..|+|.+|+..|++++..+.....         +.....+++|++.+|+.+++|.+|...+++++.+.
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  205 (434)
T 4b4t_Q          135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD---------KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA  205 (434)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC---------STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc---------chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence            334556799999999999999999999988654321         23356789999999999999999999999999876


Q ss_pred             cc
Q 015659          398 EA  399 (403)
Q Consensus       398 p~  399 (403)
                      +.
T Consensus       206 ~~  207 (434)
T 4b4t_Q          206 NS  207 (434)
T ss_dssp             HH
T ss_pred             hc
Confidence            54

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=94.79  E-value=0.13  Score=48.39  Aligned_cols=29  Identities=10%  Similarity=0.110  Sum_probs=17.3

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHh
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCV  348 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l  348 (403)
                      ..-..|.-++..|++..|+..+++++...
T Consensus        16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~   44 (373)
T 1hz4_A           16 FNALRAQVAINDGNPDEAERLAKLALEEL   44 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            33445555666666666666666666643

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=94.57  E-value=0.2  Score=42.05  Aligned_cols=71  Identities=7%  Similarity=0.038  Sum_probs=59.0

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCC-ChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF-VDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~-~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      .+.+....++..+.|..|+..+..++.+.+.++.. +       ......++..+|..++..++|.+|...+++||++-
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~s-------p~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~   93 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFS-------PPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK   93 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSC-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCccccc-------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            35677888999999999999999999987665533 4       33455688999999999999999999999998764

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=94.39  E-value=0.056  Score=49.77  Aligned_cols=68  Identities=10%  Similarity=0.020  Sum_probs=51.9

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      ..-..|..+-+.|+|.+|++.|++++.- ...+..           .....+|++.|+.++|+.++|+...++++..+|.
T Consensus       173 a~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~-----------~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          173 AGVAHGVAAANLALFTEAERRLTEANDS-PAGEAC-----------ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTT-----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHhcC-CCCccc-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            3445577788888888888888888742 000100           3447899999999999999999999999999996

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=94.20  E-value=0.11  Score=41.91  Aligned_cols=61  Identities=15%  Similarity=0.066  Sum_probs=47.8

Q ss_pred             HHHHhhHhhh----cCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHH----ccCHHHHHHHHHH
Q 015659          321 KKEEGNLLFK----NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK----LKDYQGAIELCSK  392 (403)
Q Consensus       321 ~k~~Gn~~fk----~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lk----l~~~~~ai~~~~~  392 (403)
                      ....|.-++.    .+++.+|+..|++|.+.-                 ....+.|++.+|..    .+++.+|+..+++
T Consensus        60 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-----------------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~  122 (138)
T 1klx_A           60 CRFLGDFYENGKYVKKDLRKAAQYYSKACGLN-----------------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEK  122 (138)
T ss_dssp             HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC-----------------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence            4455666666    778888888888887751                 13478999999999    9999999999999


Q ss_pred             HHhccc
Q 015659          393 VIVERE  398 (403)
Q Consensus       393 aL~~dp  398 (403)
                      |.+...
T Consensus       123 Aa~~g~  128 (138)
T 1klx_A          123 ACRLGS  128 (138)
T ss_dssp             HHHTTC
T ss_pred             HHHCCC
Confidence            988754

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=94.07  E-value=0.099  Score=45.37  Aligned_cols=62  Identities=13%  Similarity=-0.073  Sum_probs=42.1

Q ss_pred             HHHhhHhhh----cCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHH----ccCHHHHHHHHHHH
Q 015659          322 KEEGNLLFK----NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK----LKDYQGAIELCSKV  393 (403)
Q Consensus       322 k~~Gn~~fk----~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lk----l~~~~~ai~~~~~a  393 (403)
                      ...|.-++.    .+++.+|+..|++|++.-..             .-....++|++.+|+.    .+++.+|+..++++
T Consensus        89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~-------------~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A  155 (212)
T 3rjv_A           89 IVLARVLVNRQAGATDVAHAITLLQDAARDSES-------------DAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS  155 (212)
T ss_dssp             HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTS-------------HHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCC-------------cchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            344555555    66777777777777664110             0124577888888888    78888888888888


Q ss_pred             Hhc
Q 015659          394 IVE  396 (403)
Q Consensus       394 L~~  396 (403)
                      +++
T Consensus       156 ~~~  158 (212)
T 3rjv_A          156 SSL  158 (212)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            877

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=93.63  E-value=0.28  Score=38.72  Aligned_cols=45  Identities=20%  Similarity=0.175  Sum_probs=38.5

Q ss_pred             ccccCch-HHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc
Q 015659          306 PWEMNNQ-GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE  350 (403)
Q Consensus       306 ~~~m~~~-e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~  350 (403)
                      ...|+.. +.+..|..+-.+|.+.=+.++|.+|+.+|..|+++|..
T Consensus         5 ~~~m~~~~~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~   50 (117)
T 2cpt_A            5 SSGMSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH   50 (117)
T ss_dssp             CCCSCCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             cccCCccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            3466666 78888888888999998999999999999999998754

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=93.50  E-value=0.069  Score=40.14  Aligned_cols=35  Identities=11%  Similarity=0.106  Sum_probs=32.0

Q ss_pred             HHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          367 VSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       367 ~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      ...+.|+|.+++++++|.+|+..++++|+++|.+.
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~   38 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNP   38 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Confidence            45788999999999999999999999999999764

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=93.41  E-value=0.17  Score=37.45  Aligned_cols=42  Identities=17%  Similarity=0.089  Sum_probs=35.8

Q ss_pred             cCchHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc
Q 015659          309 MNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE  350 (403)
Q Consensus       309 m~~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~  350 (403)
                      |+..+.+..|..+-.+|.+.=+.|+|.+|+..|..|+++|..
T Consensus         4 m~~~~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~   45 (85)
T 2v6x_A            4 MSTGDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLML   45 (85)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            555567778888888898888999999999999999998743

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=93.37  E-value=0.091  Score=37.86  Aligned_cols=36  Identities=25%  Similarity=0.362  Sum_probs=32.3

Q ss_pred             HHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          366 RVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       366 ~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      ....+.++|.+++++++|.+|+..++++++++|.+.
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~   43 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA   43 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence            345789999999999999999999999999998763

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=93.32  E-value=0.085  Score=53.64  Aligned_cols=52  Identities=12%  Similarity=0.218  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc--CHHHHHHHHHHHHhccccc
Q 015659          334 YERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK--DYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       334 ~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~--~~~~ai~~~~~aL~~dp~~  400 (403)
                      |++|+..|.+|+..               .+....++++++.+..+++  +|.+++..|+++|++||.|
T Consensus        89 ~~~eL~~~~~~l~~---------------~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N  142 (567)
T 1dce_A           89 VKAELGFLESCLRV---------------NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN  142 (567)
T ss_dssp             HHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccc
Confidence            88999999999886               3333557777777777777  6677777777777777766

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=93.18  E-value=0.029  Score=41.76  Aligned_cols=60  Identities=15%  Similarity=0.124  Sum_probs=45.8

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      .+...|..+++.|+|.+|+..|++++.+-...               ..++.|        +.+.+++..+++++..+|.
T Consensus        37 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~--------~~~~~a~~~~~~~~~~~p~   93 (99)
T 2kc7_A           37 AYYLMGNAYRKLGDWQKALNNYQSAIELNPDS---------------PALQAR--------KMVMDILNFYNKDMYNQLE   93 (99)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS---------------THHHHH--------HHHHHHHHHHCCTTHHHHC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---------------HHHHHH--------HHHHHHHHHHHHHhccCcc
Confidence            45667999999999999999999999972211               112222        6788899999999999988


Q ss_pred             cCC
Q 015659          400 ARG  402 (403)
Q Consensus       400 ~~~  402 (403)
                      +..
T Consensus        94 ~~~   96 (99)
T 2kc7_A           94 HHH   96 (99)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            753

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=93.07  E-value=0.13  Score=38.03  Aligned_cols=43  Identities=26%  Similarity=0.201  Sum_probs=36.1

Q ss_pred             ccCch-HHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc
Q 015659          308 EMNNQ-GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE  350 (403)
Q Consensus       308 ~m~~~-e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~  350 (403)
                      .|++. +.++.|..+-.+|.+.=+.|+|.+|+..|..|+++|..
T Consensus         8 ~~~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~   51 (83)
T 2w2u_A            8 HMSAQVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQ   51 (83)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            45544 45788889999999999999999999999999998843

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=92.82  E-value=0.11  Score=45.04  Aligned_cols=81  Identities=20%  Similarity=0.082  Sum_probs=54.1

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc-----------CCCCChHHH-------HHHHHHHHHhhhHHHHHHHH
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE-----------DGSFVDDEQ-------KLVKSLRVSCWLNSAACCLK  379 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~-----------~~~~~~~~~-------~~~~~~~~~~~~N~a~c~lk  379 (403)
                      +......|.-++..+++.+|+..|++|++.-..           ......+..       +.++.-....++|++.+|+.
T Consensus        18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~   97 (212)
T 3rjv_A           18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVN   97 (212)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence            344556777788888888888888888764210           111111111       11222334578899999998


Q ss_pred             ----ccCHHHHHHHHHHHHhccc
Q 015659          380 ----LKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       380 ----l~~~~~ai~~~~~aL~~dp  398 (403)
                          .+++.+|+..++++++..|
T Consensus        98 g~g~~~d~~~A~~~~~~A~~~~~  120 (212)
T 3rjv_A           98 RQAGATDVAHAITLLQDAARDSE  120 (212)
T ss_dssp             GGGSSCCHHHHHHHHHHHTSSTT
T ss_pred             CCCCccCHHHHHHHHHHHHHcCC
Confidence                8899999999999998877

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=92.29  E-value=0.4  Score=36.14  Aligned_cols=64  Identities=16%  Similarity=0.169  Sum_probs=43.1

Q ss_pred             hHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHHhhhHHHH
Q 015659          312 QGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSED-GSFVDDEQKLVKSLRVSCWLNSAA  375 (403)
Q Consensus       312 ~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~-~~~~~~~~~~~~~~~~~~~~N~a~  375 (403)
                      ...++.|..+-.+|.+.=+.++|++|+..|..|+++|... ....++.....-.-++.-|++||-
T Consensus         9 ~~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~RAE   73 (93)
T 1wfd_A            9 DSDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAE   73 (93)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence            3456778888888999999999999999999999988541 111222333333334445555554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=92.29  E-value=0.18  Score=56.04  Aligned_cols=17  Identities=29%  Similarity=0.395  Sum_probs=9.3

Q ss_pred             CCCeEEEcCCCCcchHH
Q 015659          234 EQPLEFITDEEQVIAGL  250 (403)
Q Consensus       234 ~~p~~~~lG~~~v~~gl  250 (403)
                      |+.+.+.+.+..++|-+
T Consensus       322 G~vl~v~v~~~~iv~yi  338 (1630)
T 1xi4_A          322 GQVLSVCVEEENIIPYI  338 (1630)
T ss_pred             ceEEEEEEccchhhhhH
Confidence            44455556555555554

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.25  E-value=0.65  Score=44.64  Aligned_cols=86  Identities=14%  Similarity=0.062  Sum_probs=68.5

Q ss_pred             HHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccC-------CCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHH
Q 015659          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSED-------GSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIE  388 (403)
Q Consensus       316 ~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~-------~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~  388 (403)
                      .....+-..|......++...|...|.+|+.+....       ..+-..+...++..+..+..-++.+++.+++|.+|+.
T Consensus       113 ~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~  192 (388)
T 2ff4_A          113 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA  192 (388)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            344555556666777899999999999999986431       1222345577888999999999999999999999999


Q ss_pred             HHHHHHhcccccC
Q 015659          389 LCSKVIVEREAAR  401 (403)
Q Consensus       389 ~~~~aL~~dp~~~  401 (403)
                      .+.+++..||-+.
T Consensus       193 ~l~~~~~~~P~~E  205 (388)
T 2ff4_A          193 ELEALTFEHPYRE  205 (388)
T ss_dssp             HHHHHHHHSTTCH
T ss_pred             HHHHHHHhCCCCH
Confidence            9999999999763

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=92.04  E-value=0.072  Score=52.24  Aligned_cols=52  Identities=23%  Similarity=0.330  Sum_probs=33.7

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHH
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI  394 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL  394 (403)
                      .....|+.+|..|+|+.|...|.++                       .-+.++|.|+.++++|++|+..+.+|.
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a-----------------------~n~~~LA~~L~~Lg~yq~AVea~~KA~  175 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV-----------------------SNFGRLASTLVHLGEYQAAVDGARKAN  175 (449)
T ss_dssp             -------------CTTTHHHHHHHT-----------------------TCHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh-----------------------hhHHHHHHHHHHhccHHHHHHHHHHcC
Confidence            6778899999999999999999876                       266889999999999999999998883

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=91.95  E-value=0.19  Score=46.75  Aligned_cols=55  Identities=13%  Similarity=0.192  Sum_probs=47.9

Q ss_pred             CcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc--CHHHHHHHHHHHHhcccccC
Q 015659          332 GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK--DYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       332 ~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~--~~~~ai~~~~~aL~~dp~~~  401 (403)
                      ...++|+..|.++|.+               .+-...+.+++..+...++  .+.+++..++++|.++|.+.
T Consensus        47 e~s~~aL~~t~~~L~~---------------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y  103 (306)
T 3dra_A           47 EYSERALHITELGINE---------------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY  103 (306)
T ss_dssp             CCSHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC
T ss_pred             CCCHHHHHHHHHHHHH---------------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH
Confidence            3447899999999997               3334679999999999999  99999999999999999874

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=91.95  E-value=0.45  Score=35.27  Aligned_cols=35  Identities=20%  Similarity=0.175  Sum_probs=28.7

Q ss_pred             HHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc
Q 015659          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE  350 (403)
Q Consensus       316 ~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~  350 (403)
                      ..+..+-.+|-++=+.|+|.+|+..|..|+++|..
T Consensus        14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~   48 (86)
T 4a5x_A           14 TAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQ   48 (86)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            34556667778888999999999999999998744

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=91.69  E-value=0.17  Score=47.14  Aligned_cols=66  Identities=8%  Similarity=-0.122  Sum_probs=51.4

Q ss_pred             HHHHhhHhhhcC--cHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHH----HHc---cCHHHHHHHHH
Q 015659          321 KKEEGNLLFKNG--KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACC----LKL---KDYQGAIELCS  391 (403)
Q Consensus       321 ~k~~Gn~~fk~~--~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~----lkl---~~~~~ai~~~~  391 (403)
                      ..-+|.-+...+  ++++|+..+.+++..               .+....+.+++..+.    .++   +++.+++..|+
T Consensus        70 Wn~R~~~L~~l~~~~~~eeL~~~~~~L~~---------------nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~  134 (306)
T 3dra_A           70 WIYRFNILKNLPNRNLYDELDWCEEIALD---------------NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILE  134 (306)
T ss_dssp             HHHHHHHHHTCTTSCHHHHHHHHHHHHHH---------------CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHcccccHHHHHHHHHHHHHH---------------CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence            345677777777  999999999999986               222245777777777    666   78999999999


Q ss_pred             HHHhcccccC
Q 015659          392 KVIVEREAAR  401 (403)
Q Consensus       392 ~aL~~dp~~~  401 (403)
                      ++|+.+|.|-
T Consensus       135 ~~l~~~pkny  144 (306)
T 3dra_A          135 AMLSSDPKNH  144 (306)
T ss_dssp             HHHHHCTTCH
T ss_pred             HHHHhCCCCH
Confidence            9999999873

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=91.66  E-value=0.28  Score=49.74  Aligned_cols=75  Identities=7%  Similarity=0.022  Sum_probs=56.7

Q ss_pred             hHHHHHHHHHHHHhhHhhhcCcH-HHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccC--------
Q 015659          312 QGKIEAAGRKKEEGNLLFKNGKY-ERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD--------  382 (403)
Q Consensus       312 ~e~~~~~~~~k~~Gn~~fk~~~~-~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~--------  382 (403)
                      .+|++.-......--.+.+.+.| ++|+..|.+++.+               .+....++++++.|..++++        
T Consensus        22 ~~k~~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~---------------nP~~~taW~~R~~~l~~l~~~~~~~~~~   86 (567)
T 1dce_A           22 EQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGA---------------NPDFATLWNCRREVLQHLETEKSPEESA   86 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---------------CchhHHHHHHHHHHHHhcccccchhhhh
Confidence            34444444444444444555544 5779999999997               33446799999999999998        


Q ss_pred             --HHHHHHHHHHHHhcccccC
Q 015659          383 --YQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       383 --~~~ai~~~~~aL~~dp~~~  401 (403)
                        +++++..+++||+.+|.|.
T Consensus        87 ~~~~~eL~~~~~~l~~~pK~y  107 (567)
T 1dce_A           87 ALVKAELGFLESCLRVNPKSY  107 (567)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCH
T ss_pred             hhHHHHHHHHHHHHHhCCCCH
Confidence              9999999999999999874

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=91.48  E-value=1.7  Score=40.35  Aligned_cols=79  Identities=18%  Similarity=0.088  Sum_probs=53.6

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHH----------------------------------
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLR----------------------------------  366 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~----------------------------------  366 (403)
                      .-+.|-.+|+.|+|.+|+..|+.+|..+......+++|..+++++.                                  
T Consensus       117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAYF  196 (325)
T 3mv2_A          117 KMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAYF  196 (325)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHG
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence            3447999999999999999999999987553333332222211111                                  


Q ss_pred             ---------HHhhhHH-HHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          367 ---------VSCWLNS-AACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       367 ---------~~~~~N~-a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                               ..+-++. -...+|.++|..|-..+++.|++.|.
T Consensus       197 T~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~  239 (325)
T 3mv2_A          197 TKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS  239 (325)
T ss_dssp             GGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             ccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence                     1122222 23467899999999999999999884

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=91.09  E-value=0.81  Score=44.76  Aligned_cols=77  Identities=14%  Similarity=0.011  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHH-------------------HhhhHHHH
Q 015659          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRV-------------------SCWLNSAA  375 (403)
Q Consensus       315 ~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~-------------------~~~~N~a~  375 (403)
                      ...+......|+.+++.|+|+.|+..|++|...         .-|..+-...+                   .-...+..
T Consensus       145 Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~~---------~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~  215 (449)
T 1b89_A          145 YNNVSNFGRLASTLVHLGEYQAAVDGARKANST---------RTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELIN  215 (449)
T ss_dssp             HHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTCH---------HHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHhccHHHHHHHHHHcCCc---------hhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHH
Confidence            455667778899999999999999999999432         11111100000                   01224668


Q ss_pred             HHHHccCHHHHHHHHHHHHhccccc
Q 015659          376 CCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       376 c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      +|.+.|+|.+|+...+++|.+|+..
T Consensus       216 ~Yek~G~~eEai~lLe~aL~le~ah  240 (449)
T 1b89_A          216 YYQDRGYFEELITMLEAALGLERAH  240 (449)
T ss_dssp             HHHHTTCHHHHHHHHHHHTTSTTCC
T ss_pred             HHHHCCCHHHHHHHHHHHhCCcHHH
Confidence            9999999999999999999999754

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=90.81  E-value=0.32  Score=47.77  Aligned_cols=32  Identities=9%  Similarity=0.019  Sum_probs=28.7

Q ss_pred             HHhhhHHHHHHHH----ccCHHHHHHHHHHHHhccc
Q 015659          367 VSCWLNSAACCLK----LKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       367 ~~~~~N~a~c~lk----l~~~~~ai~~~~~aL~~dp  398 (403)
                      ..++.|++.+|.+    .+++.+|+..+++|++.+|
T Consensus       399 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          399 SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM  434 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence            4578999999999    8999999999999999983

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=90.31  E-value=2.9  Score=38.75  Aligned_cols=79  Identities=18%  Similarity=0.113  Sum_probs=53.3

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHH---------------------------------
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRV---------------------------------  367 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~---------------------------------  367 (403)
                      .-+.|-.+|..|+|.+|+..|+.+|..+......+++|..+++++..                                 
T Consensus       105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lELA  184 (320)
T 3mkr_B          105 RLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEMA  184 (320)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHH
Confidence            34569999999999999999999999875543334333222111111                                 


Q ss_pred             -------------HhhhHH-HHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          368 -------------SCWLNS-AACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       368 -------------~~~~N~-a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                                   .+-++. -...+|.++|..|-..+++.|++.|.
T Consensus       185 AYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~  230 (320)
T 3mkr_B          185 AYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK  230 (320)
T ss_dssp             HHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred             HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence                         111222 23467889999999999999999774

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=90.12  E-value=0.44  Score=38.22  Aligned_cols=57  Identities=12%  Similarity=-0.108  Sum_probs=48.2

Q ss_pred             HhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHH----ccCHHHHHHHHHHHHhcc
Q 015659          324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK----LKDYQGAIELCSKVIVER  397 (403)
Q Consensus       324 ~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lk----l~~~~~ai~~~~~aL~~d  397 (403)
                      .|.-++..+.+++|+..|++|.+.-                 ....++|++.+|+.    .+++.+|+..+++|.+..
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g-----------------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g   91 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELN-----------------SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN   91 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTT-----------------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCC-----------------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC
Confidence            5666777788999999999999861                 13588999999999    999999999999998763

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=89.65  E-value=0.32  Score=46.17  Aligned_cols=34  Identities=12%  Similarity=0.151  Sum_probs=20.5

Q ss_pred             HHhhhHHHHHHHHc-c-CHHHHHHHHHHHHhccccc
Q 015659          367 VSCWLNSAACCLKL-K-DYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       367 ~~~~~N~a~c~lkl-~-~~~~ai~~~~~aL~~dp~~  400 (403)
                      ..+.++|..|..++ + ++.+++..|+++|+.||.|
T Consensus       123 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN  158 (349)
T 3q7a_A          123 YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN  158 (349)
T ss_dssp             HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC
T ss_pred             HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC
Confidence            34556666666665 5 5666666666666666655

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=88.66  E-value=0.62  Score=42.74  Aligned_cols=65  Identities=8%  Similarity=-0.072  Sum_probs=50.2

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      ..-..|.-+|+.++|..|+..+++++..-      .       ..+....++|++.++..+|+|.+|+..+.+|+.-.
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~------d-------~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~  201 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWP------D-------KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP  201 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCS------C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccC------C-------cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence            34566778889999999998887665431      1       11234589999999999999999999999998654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=88.60  E-value=0.81  Score=43.34  Aligned_cols=57  Identities=16%  Similarity=0.165  Sum_probs=48.5

Q ss_pred             hcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc-CHHHHHHHHHHHHhcccccC
Q 015659          330 KNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-DYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       330 k~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~-~~~~ai~~~~~aL~~dp~~~  401 (403)
                      +.+..++|+..+.++|.+               ++-...+.+++..+..+++ .+++++..++++|..+|.|.
T Consensus        66 ~~e~se~AL~lt~~~L~~---------------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny  123 (349)
T 3q7a_A           66 KEEKSERALELTEIIVRM---------------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY  123 (349)
T ss_dssp             TTCCSHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH
T ss_pred             hCCCCHHHHHHHHHHHHh---------------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH
Confidence            345667899999999997               3334678999999999999 59999999999999999874

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=88.48  E-value=0.52  Score=46.77  Aligned_cols=56  Identities=11%  Similarity=-0.050  Sum_probs=40.6

Q ss_pred             hcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          330 KNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       330 k~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      +.|++.+|+..|++|++..               +-...+++|++..+.++|++.+|+..++++|...|.+
T Consensus       403 ~~~~~~~A~~~~e~al~~~---------------p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~  458 (530)
T 2ooe_A          403 CSKDKSVAFKIFELGLKKY---------------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  458 (530)
T ss_dssp             HTCCHHHHHHHHHHHHHHH---------------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred             HcCChhHHHHHHHHHHHHC---------------CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence            4666677777777776652               2224577888888888999999999999998876543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=87.70  E-value=0.78  Score=43.11  Aligned_cols=35  Identities=9%  Similarity=0.172  Sum_probs=23.3

Q ss_pred             HHHhhhHHHHHHHHccC-HHHHHHHHHHHHhccccc
Q 015659          366 RVSCWLNSAACCLKLKD-YQGAIELCSKVIVEREAA  400 (403)
Q Consensus       366 ~~~~~~N~a~c~lkl~~-~~~ai~~~~~aL~~dp~~  400 (403)
                      +..+++++..+..+++. +.+++.+++++++.+|.|
T Consensus       143 Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N  178 (331)
T 3dss_A          143 NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN  178 (331)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC
T ss_pred             CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC
Confidence            34566666666666666 467777777777777665

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=87.51  E-value=0.5  Score=44.44  Aligned_cols=58  Identities=5%  Similarity=0.053  Sum_probs=44.4

Q ss_pred             hhcCcHH-HHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccC----------HHHHHHHHHHHHhcc
Q 015659          329 FKNGKYE-RAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD----------YQGAIELCSKVIVER  397 (403)
Q Consensus       329 fk~~~~~-~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~----------~~~ai~~~~~aL~~d  397 (403)
                      -+.+.|. +|+..+.++|.+               .+-...+.+.+..|...++.          +.+++..++++|..+
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~---------------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~  104 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGA---------------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN  104 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTT---------------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHcCCCCHHHHHHHHHHHHH---------------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence            3567666 789999999886               23335677777777777765          789999999999999


Q ss_pred             cccC
Q 015659          398 EAAR  401 (403)
Q Consensus       398 p~~~  401 (403)
                      |.|.
T Consensus       105 PKny  108 (331)
T 3dss_A          105 PKSY  108 (331)
T ss_dssp             TTCH
T ss_pred             CCCH
Confidence            9873

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=87.30  E-value=1  Score=42.87  Aligned_cols=61  Identities=11%  Similarity=-0.017  Sum_probs=50.2

Q ss_pred             HhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       324 ~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      .+..++..|+++.|+...++|+.+ +.    +           ...|.-++.++.-.|++.+|+..+.+|+.++|..
T Consensus       283 lal~~l~~gd~d~A~~~l~rAl~L-n~----s-----------~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          283 KAVSALVKGKTDESYQAINTGIDL-EM----S-----------WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH-CC----C-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhc-CC----C-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            455566789999999999999997 21    1           2245567889999999999999999999999975

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=87.27  E-value=0.72  Score=45.76  Aligned_cols=55  Identities=16%  Similarity=0.255  Sum_probs=47.9

Q ss_pred             hhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659          329 FKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       329 fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp  398 (403)
                      .+.|++.+|...|++|+.....               ...++.+++..+++++++++|+..++++|+..|
T Consensus        23 ~~~~~~~~a~~~~e~al~~~P~---------------~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p   77 (530)
T 2ooe_A           23 AQNQPIDKARKTYERLVAQFPS---------------SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL   77 (530)
T ss_dssp             HHSSCHHHHHHHHHHHHTTCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC
T ss_pred             HHhCCHHHHHHHHHHHHHHCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Confidence            4578999999999999997322               245888899999999999999999999999998

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=86.04  E-value=2.6  Score=31.31  Aligned_cols=37  Identities=30%  Similarity=0.369  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc
Q 015659          314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE  350 (403)
Q Consensus       314 ~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~  350 (403)
                      -+..|...--++..+.+.|+|+.||.++++|..+|..
T Consensus        11 pLn~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~e   47 (97)
T 2crb_A           11 PLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE   47 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            3567777778899999999999999999999999865

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=85.55  E-value=0.88  Score=42.30  Aligned_cols=63  Identities=10%  Similarity=-0.042  Sum_probs=51.4

Q ss_pred             HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659          323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp  398 (403)
                      -.|..++..|++++|++.+.++|..-+   .          .....++.-++.|++++++.+.|.+...++.+.+|
T Consensus       105 ~la~i~~~~g~~eeAL~~l~~~i~~~~---~----------~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~  167 (310)
T 3mv2_B          105 LLATAQAILGDLDKSLETCVEGIDNDE---A----------EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE  167 (310)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHTSSC---S----------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHhccCC---C----------cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence            567888889999999999999866411   0          12244777889999999999999999999998888

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=85.22  E-value=0.28  Score=48.00  Aligned_cols=77  Identities=13%  Similarity=0.038  Sum_probs=46.7

Q ss_pred             HHhhHhhhcCcHHHHHHHHHHHHHHhccC-----------CCCCh--H----HH-HHHHHHHHHhhhHHHHHHHHcc---
Q 015659          323 EEGNLLFKNGKYERAGKKYNKAADCVSED-----------GSFVD--D----EQ-KLVKSLRVSCWLNSAACCLKLK---  381 (403)
Q Consensus       323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~-----------~~~~~--~----~~-~~~~~~~~~~~~N~a~c~lkl~---  381 (403)
                      ..|+.++++|++.+|+..|+++.+.-+..           .+..+  +    .. +.++. ....++|++.++...+   
T Consensus         8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~~~~   86 (452)
T 3e4b_A            8 RLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-SPRAQARLGRLLAAKPGAT   86 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC-----------------------------CHHHHHHHHHTC--CC
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCCC
Confidence            36888899999999999999998752110           00000  0    00 11222 5667888888666655   


Q ss_pred             --CHHHHHHHHHHHHhccccc
Q 015659          382 --DYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       382 --~~~~ai~~~~~aL~~dp~~  400 (403)
                        ++.+|+..++++++.++.+
T Consensus        87 ~~~~~~A~~~~~~Aa~~g~~~  107 (452)
T 3e4b_A           87 EAEHHEAESLLKKAFANGEGN  107 (452)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSS
T ss_pred             CcCHHHHHHHHHHHHHCCCHH
Confidence              7888999999988865544

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=83.73  E-value=1.8  Score=42.24  Aligned_cols=78  Identities=13%  Similarity=0.023  Sum_probs=43.1

Q ss_pred             HHHHHhhHhhh----cCcHHHHHHHHHHHHHHhcc-----------C-CCCChHHH-------HHHHHHHHHhhhHHHHH
Q 015659          320 RKKEEGNLLFK----NGKYERAGKKYNKAADCVSE-----------D-GSFVDDEQ-------KLVKSLRVSCWLNSAAC  376 (403)
Q Consensus       320 ~~k~~Gn~~fk----~~~~~~A~~~Y~~al~~l~~-----------~-~~~~~~~~-------~~~~~~~~~~~~N~a~c  376 (403)
                      .....|..++.    .+++.+|+..|++|++.-..           . .....+..       +.+..-....+.|++.+
T Consensus        41 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~  120 (490)
T 2xm6_A           41 AQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVM  120 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            34455666666    78888888888887764110           0 00000000       00111123456677777


Q ss_pred             HHH----ccCHHHHHHHHHHHHhcc
Q 015659          377 CLK----LKDYQGAIELCSKVIVER  397 (403)
Q Consensus       377 ~lk----l~~~~~ai~~~~~aL~~d  397 (403)
                      |..    .+++.+|+..++++++.+
T Consensus       121 y~~g~g~~~~~~~A~~~~~~a~~~~  145 (490)
T 2xm6_A          121 YHEGNGVKVDKAESVKWFRLAAEQG  145 (490)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            777    677777777777776653

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=83.67  E-value=2.1  Score=44.83  Aligned_cols=59  Identities=24%  Similarity=0.402  Sum_probs=48.3

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHH
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV  393 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~a  393 (403)
                      -+-.++.-+.++++|+.|+..-++|+.+....               -.++.+||.||+++++|+.|+-..+-.
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPse---------------F~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDS---------------FESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchh---------------hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            34556777789999999999999999986543               358899999999999999998765543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=83.01  E-value=1.4  Score=33.29  Aligned_cols=30  Identities=10%  Similarity=0.063  Sum_probs=26.3

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADC  347 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~  347 (403)
                      +.-+...|..+|+.|++..|+..|++|+++
T Consensus        46 ~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A           46 VSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            344567899999999999999999999997

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=82.83  E-value=2.2  Score=44.29  Aligned_cols=74  Identities=18%  Similarity=0.109  Sum_probs=46.0

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHH-----HhccCCCCChHHHHHH-HHHHHHhhhHHHH-HHHHccCHHHHHHHHHHH
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAAD-----CVSEDGSFVDDEQKLV-KSLRVSCWLNSAA-CCLKLKDYQGAIELCSKV  393 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~-----~l~~~~~~~~~~~~~~-~~~~~~~~~N~a~-c~lkl~~~~~ai~~~~~a  393 (403)
                      .+..|..+.+.++++.|.++|.++-+     .|..... +.+...++ +.....=..|.|. |+++++++++|++.|.+.
T Consensus       684 W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~-~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          684 WRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFN-NKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcC-CHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHc
Confidence            46789999999999999999988632     2222111 22222222 2222222345554 888899999998887665


Q ss_pred             Hh
Q 015659          394 IV  395 (403)
Q Consensus       394 L~  395 (403)
                      -+
T Consensus       763 ~~  764 (814)
T 3mkq_A          763 QR  764 (814)
T ss_dssp             TC
T ss_pred             CC
Confidence            43

>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*

Probab=82.56  E-value=6.8  Score=28.79  Aligned_cols=32  Identities=28%  Similarity=0.317  Sum_probs=29.3

Q ss_pred             HHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHH
Q 015659          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADC  347 (403)
Q Consensus       316 ~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~  347 (403)
                      ..++.+...|.++|+.+||-.|...++++...
T Consensus        51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~   82 (106)
T 2vkj_A           51 KKARSLIAEGKDLFETANYGEALVFFEKALNL   82 (106)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence            56778889999999999999999999999986

>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.16  E-value=6  Score=30.77  Aligned_cols=70  Identities=10%  Similarity=0.002  Sum_probs=51.9

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc-------CCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHH
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE-------DGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGA  386 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~-------~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~a  386 (403)
                      .|-.+.++|-..=..|+-+.|+..|+++|..|+.       .+....+.|.+.+.+..+-..||..+.-+++.....
T Consensus        21 ~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL~~Le~~   97 (116)
T 2dl1_A           21 KAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRLEILEKG   97 (116)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3444444444444468999999999999998854       123567899999999999999999998888754443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=80.47  E-value=1.7  Score=42.40  Aligned_cols=76  Identities=12%  Similarity=0.031  Sum_probs=46.3

Q ss_pred             HHHhhHhhhcC---cHHHHHHHHHHHHHHhccC--------------CCCChHHHHHHH------HHHHHhhhHHHHH-H
Q 015659          322 KEEGNLLFKNG---KYERAGKKYNKAADCVSED--------------GSFVDDEQKLVK------SLRVSCWLNSAAC-C  377 (403)
Q Consensus       322 k~~Gn~~fk~~---~~~~A~~~Y~~al~~l~~~--------------~~~~~~~~~~~~------~~~~~~~~N~a~c-~  377 (403)
                      ...|.-+++.|   ++.+|+..|++|+..-...              .....+..+.+.      +-....++|++.+ +
T Consensus       180 ~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~  259 (452)
T 3e4b_A          180 VELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLY  259 (452)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            45577777888   9999999999998752110              000011111111      2234467778877 3


Q ss_pred             --HHccCHHHHHHHHHHHHhcc
Q 015659          378 --LKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       378 --lkl~~~~~ai~~~~~aL~~d  397 (403)
                        ...+++.+|+..++++++.+
T Consensus       260 ~~~~~~d~~~A~~~~~~Aa~~g  281 (452)
T 3e4b_A          260 DFPELGDVEQMMKYLDNGRAAD  281 (452)
T ss_dssp             HSGGGCCHHHHHHHHHHHHHTT
T ss_pred             hCCCCCCHHHHHHHHHHHHHCC
Confidence              46777888888888887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	403
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	2e-22
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	4e-12
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	2e-20
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	1e-08
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	3e-19
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	3e-09
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	5e-18
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	4e-13
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	2e-17
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	1e-08
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	6e-16
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	8e-07
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	1e-15
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	4e-05
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	2e-15
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	1e-11
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	3e-15
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	0.001
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	1e-13
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	5e-05
d1jvwa_	160	d.26.1.1 (A:) Macrophage infectivity potentiator p	2e-12
d1jvwa_	160	d.26.1.1 (A:) Macrophage infectivity potentiator p	9e-05
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	2e-12
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	2e-12
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	7e-12
d1ix5a_	151	d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcu	2e-10
d1ix5a_	151	d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcu	0.003
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	1e-09
d1hxva_	85	d.26.1.1 (A:) Trigger factor PPIase domain {Mycopl	2e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-05
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	2e-04
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-04
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	4e-04
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	0.002
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	0.003

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 89.4 bits (221), Expect = 2e-22
 Identities = 48/111 (43%), Positives = 62/111 (55%), Gaps = 3/111 (2%)

Query: 44  GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVAT 103
            + G+ K + K G     P  G  V +HYVGTL +GTKFDS+RDR D  +F LG G V  
Sbjct: 8   KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIK 67

Query: 104 GLDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
           G D G+ TM K E A   FT+ S+  +G  G    +P  + + FEVEL  W
Sbjct: 68  GWDLGVATMTKGEVA--EFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEW 116

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 60.5 bits (146), Expect = 4e-12
 Identities = 41/146 (28%), Positives = 59/146 (40%), Gaps = 33/146 (22%)

Query: 157 VDLS--KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDV 214
           +D++  KDGG++K I ++G+    P     V V Y                         
Sbjct: 2   IDITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHY------------------------- 36

Query: 215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFG 274
             +  LE+GT F+    D      F      VI G D   ATM K E A  TI  +YG+G
Sbjct: 37  --VGTLENGTKFDSS-RDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYG 93

Query: 275 NVEAKRDLATIPSCAKLYYEVEMMDF 300
           +         IP  A L +EVE+ ++
Sbjct: 94  D---AGSPPKIPGGATLIFEVELFEW 116

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.4 bits (208), Expect = 2e-20
 Identities = 45/111 (40%), Positives = 59/111 (53%), Gaps = 3/111 (2%)

Query: 44  GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVAT 103
            + G+ K + + G   + P  GD V +HY G LLDGTKFDS+ DR D  +F LG G+V  
Sbjct: 9   QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 68

Query: 104 GLDNGIITMKKRECAVFTFTLPSELRFGVEG-RDSLPPNSVVQFEVELVSW 153
             D  I TMK     V   T   E  +G  G    +PPN+ + FEVEL  +
Sbjct: 69  AWDIAIATMKV--GEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 117

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (120), Expect = 1e-08
 Identities = 40/149 (26%), Positives = 55/149 (36%), Gaps = 33/149 (22%)

Query: 157 VDLS--KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDV 214
           VD+S  +D G++K I  +G     P   D V V Y   L DGT                 
Sbjct: 3   VDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTK---------------- 46

Query: 215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFG 274
                            D +    F   + +VI   D   ATMK  E   +T   EY +G
Sbjct: 47  ------------FDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYG 94

Query: 275 NVEAKRDLATIPSCAKLYYEVEMMDFIKE 303
           +  +      IP  A L +EVE+ +F  E
Sbjct: 95  SAGSP---PKIPPNATLVFEVELFEFKGE 120

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 80.2 bits (197), Expect = 3e-19
 Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 3/110 (2%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +TP  GD V +HY G L +G KFDS+ DR +P  F +G GQV   
Sbjct: 3   DRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKA 62

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
            D G+ TMKK E          E  +G  G    +P N+ + FEVEL+ +
Sbjct: 63  WDIGVATMKKGEIC--HLLCKPEYAYGATGSLPKIPSNATLFFEVELLDF 110

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 52.1 bits (124), Expect = 3e-09
 Identities = 39/140 (27%), Positives = 55/140 (39%), Gaps = 31/140 (22%)

Query: 161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARL 220
           KD G++K +   G  + +P   D V V Y   L +G                        
Sbjct: 2   KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKK---------------------- 39

Query: 221 EDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKR 280
                     +D  +P  F   + QVI   D   ATMKK E   +    EY +G   +  
Sbjct: 40  ------FDSSHDRNEPFVFSIGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGATGS-- 91

Query: 281 DLATIPSCAKLYYEVEMMDF 300
            L  IPS A L++EVE++DF
Sbjct: 92  -LPKIPSNATLFFEVELLDF 110

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 77.0 bits (189), Expect = 5e-18
 Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 7/113 (6%)

Query: 43  LGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVA 102
           L + GI ++  + G  +  P  G  V IH  G    G  FD     +     +     + 
Sbjct: 5   LEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGR-CGGRVFDCRDVAFTVGEGED--HDIP 61

Query: 103 TGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSL--PPNSVVQFEVELVSW 153
            G+D  +  M++ E       L     FG  G+      PN+ + +EV L S+
Sbjct: 62  IGIDKALEKMQREEQC--ILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSF 112

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 63.1 bits (153), Expect = 4e-13
 Identities = 35/145 (24%), Positives = 57/145 (39%), Gaps = 33/145 (22%)

Query: 158 DLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYI 217
           DL +DGGI+++   +GE  ++P +   V +                    E       + 
Sbjct: 3   DLLEDGGIIRRTKRRGEGYSNPNEGARVQIHL------------------EGRCGGRVFD 44

Query: 218 ARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE 277
            R    TV E + +              +  G+D+    M++EE  I+ +   YGFG  E
Sbjct: 45  CRDVAFTVGEGEDH-------------DIPIGIDKALEKMQREEQCILHLGPRYGFG--E 89

Query: 278 AKRDLATIPSCAKLYYEVEMMDFIK 302
           A +    I   A+L YEV +  F K
Sbjct: 90  AGKPKFGIEPNAELIYEVTLKSFEK 114

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (185), Expect = 2e-17
 Identities = 40/115 (34%), Positives = 57/115 (49%), Gaps = 11/115 (9%)

Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRD-------RYDPLTFKLGTG 99
              K +LK G   + P+ GD V   Y GTL DGT FD+             PL+FK+G G
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVG 61

Query: 100 QVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD--SLPPNSVVQFEVELVS 152
           +V  G D  ++TM   +       +  E  +G +G+    +PPN+ + FEVELV 
Sbjct: 62  KVIRGWDEALLTMS--KGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVD 114

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 1e-08
 Identities = 38/137 (27%), Positives = 54/137 (39%), Gaps = 23/137 (16%)

Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
              K +L+KG++   P   D V   Y   L DGT+     +                   
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQ------------------- 42

Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
                K     +PL F     +VI G D    TM K E A + I  E+ +G  +  +  A
Sbjct: 43  --TSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYG--KKGQPDA 98

Query: 284 TIPSCAKLYYEVEMMDF 300
            IP  AKL +EVE++D 
Sbjct: 99  KIPPNAKLTFEVELVDI 115

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score = 74.1 bits (181), Expect = 6e-16
 Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 4/94 (4%)

Query: 60  DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAV 119
           + P+  D V ++Y GTL+DG +FD++  R +PL+F+L    V  G   G+  +KK     
Sbjct: 120 EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGG--K 175

Query: 120 FTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSW 153
               +P EL +G  G   +PPNS + F+VEL+  
Sbjct: 176 IKLVIPPELAYGKAGVPGIPPNSTLVFDVELLDV 209

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score = 47.2 bits (111), Expect = 8e-07
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 7/85 (8%)

Query: 216 YIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGN 275
           Y   L DG  F+     GE         + VI G       +KK     + I  E  +G 
Sbjct: 132 YKGTLIDGKEFDNSYTRGEP---LSFRLDGVIPGWTEGLKNIKKGGKIKLVIPPELAYGK 188

Query: 276 VEAKRDLATIPSCAKLYYEVEMMDF 300
                 +  IP  + L ++VE++D 
Sbjct: 189 ----AGVPGIPPNSTLVFDVELLDV 209

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.2 bits (171), Expect = 1e-15
 Identities = 43/108 (39%), Positives = 56/108 (51%), Gaps = 3/108 (2%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
             +K   +  G     P+ GD VTIHY GTL +G KFDS+ DR  P    +G GQV  G 
Sbjct: 6   GNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGW 65

Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVS 152
           D GI  +   E A    T+P    +G  G    +PPNS + F+VEL+ 
Sbjct: 66  DVGIPKLSVGEKA--RLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLK 111

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.5 bits (94), Expect = 4e-05
 Identities = 26/138 (18%), Positives = 42/138 (30%), Gaps = 31/138 (22%)

Query: 162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE 221
           +G +    +  G+    P   D V + Y   L +G     + + G  F            
Sbjct: 5   EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQ----------- 53

Query: 222 DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRD 281
                                  QVI G D     +   E A +TI   Y +G       
Sbjct: 54  -----------------CNIGVGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFP-- 94

Query: 282 LATIPSCAKLYYEVEMMD 299
              IP  + L ++VE++ 
Sbjct: 95  -GLIPPNSTLVFDVELLK 111

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (171), Expect = 2e-15
 Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 7/114 (6%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + GI +++   G  +  P  G  V +   G   D       +        +     +  G
Sbjct: 7   DGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFD---QRELRFEIGEGENLDLPYG 63

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDSL--PPNSVVQFEVELVSWITV 156
           L+  I  M+K E +     L     FG  G++    PPN+ +++E+ L S+   
Sbjct: 64  LERAIQRMEKGEHS--IVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKA 115

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (143), Expect = 1e-11
 Identities = 34/149 (22%), Positives = 54/149 (36%), Gaps = 35/149 (23%)

Query: 158 DLS--KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVS 215
           DL+  +DGGI+++I  +GE  A P +   V V  +    D                    
Sbjct: 1   DLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFD---------------- 44

Query: 216 YIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGN 275
                              +      +   +  GL+R    M+K E +IV +   Y FG 
Sbjct: 45  ---------------QRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFG- 88

Query: 276 VEAKRDLATIPSCAKLYYEVEMMDFIKEK 304
               ++   IP  A+L YE+ +  F K K
Sbjct: 89  -SVGKEKFQIPPNAELKYELHLKSFEKAK 116

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (169), Expect = 3e-15
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 3/108 (2%)

Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG KFDS+RDR  P  F LG  +V  G +
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
            G+  M   +      T+  +  +G  G    +PP++ + F+VEL+  
Sbjct: 61  EGVAQMSVGQR--AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 0.001
 Identities = 27/137 (19%), Positives = 48/137 (35%), Gaps = 31/137 (22%)

Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
           G+  + +  G+    P      +V Y  ML DG     + +    F              
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFK------------- 47

Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
                          F+  +++VI G +   A M   + A +TI+ +Y +G         
Sbjct: 48  ---------------FMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHP---G 89

Query: 284 TIPSCAKLYYEVEMMDF 300
            IP  A L ++VE++  
Sbjct: 90  IIPPHATLVFDVELLKL 106

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 67.6 bits (164), Expect = 1e-13
 Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 5/90 (5%)

Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
            D VT+ Y G L+DGT FDST     P TF     QV  G    +  M           +
Sbjct: 116 SDTVTVEYTGRLIDGTVFDSTEKTGKPATF--QVSQVIPGWTEALQLMPAGSTW--EIYV 171

Query: 125 PSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
           PS L +G       + PN  + F++ L+S 
Sbjct: 172 PSGLAYGPRSVGGPIGPNETLIFKIHLISV 201

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 41.8 bits (97), Expect = 5e-05
 Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 6/87 (6%)

Query: 216 YIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGN 275
           Y  RL DGTVF+       +P  F     QVI G       M       + +     +G 
Sbjct: 123 YTGRLIDGTVFDST-EKTGKPATFQVS--QVIPGWTEALQLMPAGSTWEIYVPSGLAYGP 179

Query: 276 VEAKRDLATIPSCAKLYYEVEMMDFIK 302
                    I     L +++ ++   K
Sbjct: 180 RSVG---GPIGPNETLIFKIHLISVKK 203

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 62.9 bits (152), Expect = 2e-12
 Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 22/146 (15%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG+  + +  G     P   D+  +HY G L DGT FDS+R+R  P        +V  G 
Sbjct: 34  SGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKP--TTFRPNEVIKGW 91

Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWITVVDLSKDGG 164
              +  M++ +   +   +P +L +GV G    +PP S ++F+VEL+S            
Sbjct: 92  TEALQLMREGDR--WRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISI----------- 138

Query: 165 IVKKILEKGERDASPGDLDEVLVKYQ 190
                 + G +  +  ++DE+L K +
Sbjct: 139 ------KDGGKGRTAEEVDEILRKAE 158

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 40.2 bits (93), Expect = 9e-05
 Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 245 QVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEK 304
           +VI G       M++ +   + I ++  +G          IP  + L ++VE++     K
Sbjct: 86  EVIKGWTEALQLMREGDRWRLFIPYDLAYG---VTGGGGMIPPYSPLEFDVELISI---K 139

Query: 305 VPWEMNNQGKIEAAGRKKEE 324
              +     +++   RK EE
Sbjct: 140 DGGKGRTAEEVDEILRKAEE 159

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 63.1 bits (152), Expect = 2e-12
 Identities = 29/81 (35%), Positives = 45/81 (55%)

Query: 304 KVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVK 363
           K  WEM+ + K+E A   KE+G + FK GKY +A  +Y K    +  +    + E K  +
Sbjct: 1   KESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASE 60

Query: 364 SLRVSCWLNSAACCLKLKDYQ 384
           S  ++ +LN A C LKL++Y 
Sbjct: 61  SFLLAAFLNLAMCYLKLREYT 81

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (151), Expect = 2e-12
 Identities = 26/71 (36%), Positives = 43/71 (60%)

Query: 307 WEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLR 366
           WEMN++ K+E +   KE G + FK GKY++A  +Y K    +  + SF ++E +  ++LR
Sbjct: 2   WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALR 61

Query: 367 VSCWLNSAACC 377
           ++  LN A C 
Sbjct: 62  LASHLNLAMCH 72

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 60.8 bits (146), Expect = 7e-12
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 303 EKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVD-DEQKL 361
           +K  ++  ++ K+++A   KEEGN  FK  +   A  KY +A D       + D      
Sbjct: 2   KKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDK 61

Query: 362 VKSLRVSCWLNSAACCLKLKDYQ 384
            K++ +SC LN A C  K KDY 
Sbjct: 62  KKNIEISCNLNLATCYNKNKDYP 84

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Length = 151

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

 Score = 56.4 bits (135), Expect = 2e-10
 Identities = 23/119 (19%), Positives = 49/119 (41%), Gaps = 18/119 (15%)

Query: 65  GDEVTIHYVGTLLDGTKFDSTRD-------------RYDPLTFKLGTGQVATGLDNGIIT 111
           G ++ + Y+G L  G  FD++ +              Y+PL F +G GQ+  G +  ++ 
Sbjct: 5   GVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLD 64

Query: 112 MKKRECAVFTFTLPSELRFGVEGRD---SLPPNSVVQFEVELVSWITVVDLSKDGGIVK 167
           M+       T  +P+E  +G         +P ++  + + E    + ++       I +
Sbjct: 65  MEV--GDEKTVKIPAEKAYGNRNEMLIQKIPRDAFKEADFEPEEGMVILAEGIPATITE 121

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Length = 151

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 12/73 (16%)

Query: 214 VSYIARLEDGTVFE------------KKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEE 261
           V YI +LE G VF+                   +PLEF+  E Q+I G +     M+  +
Sbjct: 10  VDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGD 69

Query: 262 WAIVTINHEYGFG 274
              V I  E  +G
Sbjct: 70  EKTVKIPAEKAYG 82

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 53.7 bits (128), Expect = 1e-09
 Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 15/118 (12%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG+       G        G  +  HYVG L +G  FDS+ +R  PLTF++G G+V  G 
Sbjct: 8   SGLAFCDKVVG-YGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGW 66

Query: 106 D------NGIITMKKRECAVFTFTLPSELRFGVEG------RDSLPPNSVVQFEVELV 151
           D      +GI  M        T  +P EL +G  G         +PP SV+ F++E +
Sbjct: 67  DQGILGSDGIPPMLTGGKR--TLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 122

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Length = 85

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

 Score = 51.9 bits (124), Expect = 2e-09
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 9/88 (10%)

Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
           GD   I + G  +D  K  S   +   LT   G+     G + G+I MK  +      T 
Sbjct: 5   GDIAIIDFTGI-VDNKKLASASAQNYELTI--GSNSFIKGFETGLIAMKVNQKKTLALTF 61

Query: 125 PSELRFGVEGRDSLPPNSVVQFEVELVS 152
           P    + V+       +  V FEV L +
Sbjct: 62  P--SDYHVKE----LQSKPVTFEVVLKA 83

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 4e-05
 Identities = 6/72 (8%), Positives = 20/72 (27%), Gaps = 15/72 (20%)

Query: 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD 382
           E  +  ++ G +E A +   +      ++                   L  ++   + + 
Sbjct: 4   ELAHREYQAGDFEAAERHCMQL---WRQEPDNTG------------VLLLLSSIHFQCRR 48

Query: 383 YQGAIELCSKVI 394
              +    +  I
Sbjct: 49  LDRSAHFSTLAI 60

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 299 DFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDE 358
           DF ++      +    +  +   K  GN  FK+  +E A KKY K    V    +  +D 
Sbjct: 8   DFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDA 67

Query: 359 QKL-VKSLRVSCWLNSAACCLKLKDYQGAIELC 390
               ++ + +SC LN  AC LK+ D+QGA++ C
Sbjct: 68  DGAKLQPVALSCVLNIGACKLKMSDWQGAVDSC 100

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 19/97 (19%), Positives = 27/97 (27%), Gaps = 19/97 (19%)

Query: 317 AAGRKKEEGNLLFKNGKYERAGKKYNKA-------------------ADCVSEDGSFVDD 357
           +A   KE+GN LF   KY  A   Y +A                        E       
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62

Query: 358 EQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI 394
               +    V        C L+++ Y  AI    +  
Sbjct: 63  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAY 99

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 4e-04
 Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 26/107 (24%)

Query: 318 AGRKKEEGNLLFKNGKYERAGKKYNKAAD--------------CVSEDGSFVDDEQKLVK 363
           A ++KE GN  +K   ++ A K Y+KA +                 E G +    +   K
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 364 SL------------RVSCWLNSAACCLKLKDYQGAIELCSKVIVERE 398
           ++                +        K + Y+ AI   +K + E  
Sbjct: 64  AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 13/98 (13%), Positives = 25/98 (25%), Gaps = 19/98 (19%)

Query: 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSL---------- 365
           E     KE+GN     G  + A + Y++A      +     +                  
Sbjct: 1   EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 60

Query: 366 ---------RVSCWLNSAACCLKLKDYQGAIELCSKVI 394
                        +   AA    L  ++ A     + +
Sbjct: 61  CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGL 98

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 35.9 bits (81), Expect = 0.003
 Identities = 10/77 (12%), Positives = 22/77 (28%), Gaps = 3/77 (3%)

Query: 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNS 373
           ++  A     +       G+Y+ A     +A +      +   +E          C    
Sbjct: 5   EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGL 61

Query: 374 AACCLKLKDYQGAIELC 390
           A     L+ +  A+   
Sbjct: 62  AEALAGLRSFDEALHSA 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	403
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.93
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.93
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.92
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.92
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.92
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.92
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.92
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	99.91
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	99.91
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.9
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.9
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.89
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	99.89
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	99.88
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.87
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	99.85
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	99.85
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	99.84
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.84
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.82
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.8
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	99.79
d1ix5a_	151	Archaeal FKBP {Archaeon Methanococcus thermolithot	99.71
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.7
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.66
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.66
d1ix5a_	151	Archaeal FKBP {Archaeon Methanococcus thermolithot	99.45
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	99.4
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.27
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	99.24
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.15
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.14
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.11
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.08
d1l1pa_	106	Trigger factor PPIase domain {Escherichia coli [Ta	98.91
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.88
d1t11a3	113	Trigger factor PPIase domain {Vibrio cholerae [Tax	98.84
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.74
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.4
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.39
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.37
d1l1pa_	106	Trigger factor PPIase domain {Escherichia coli [Ta	98.35
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.35
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.31
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.27
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.26
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.24
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.22
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.21
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.18
d1t11a3	113	Trigger factor PPIase domain {Vibrio cholerae [Tax	98.17
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.14
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.09
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.04
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.89
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.83
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.81
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.66
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.66
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.63
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.62
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.62
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.51
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.38
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.38
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.36
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.34
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	97.24
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.19
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	97.07
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.0
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	96.84
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.63
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	96.04
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	95.96
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.4
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	95.06
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	95.03
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	94.46
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	92.39
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	92.17
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	90.46
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	90.24
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	80.82

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.2e-25  Score=179.99  Aligned_cols=110  Identities=41%  Similarity=0.675  Sum_probs=104.7

Q ss_pred             ecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEE
Q 015659           43 LGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTF  122 (403)
Q Consensus        43 ~~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~  122 (403)
                      ..++||+|+++++|.|...|..||.|.|||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++|++++|  
T Consensus         8 ~~d~gv~~~i~~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~p~~f~~g~~~~i~G~~~~l~~M~~Ge~~~~--   85 (120)
T d1q1ca1           8 KQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHI--   85 (120)
T ss_dssp             SCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEE--
T ss_pred             CCCCCEEEEEEEcccCCcCCCCCCEEEEEEEEEEcCCCEEEeccccccceeeecCCCceeeeeeeeeccccCCcEEEE--
Confidence            356999999999999977799999999999999999999999999889999999999999999999999999999999  


Q ss_pred             EcCCCCCCCCCCCC-CCCCCCeEEEEEEeccce
Q 015659          123 TLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI  154 (403)
Q Consensus       123 ~vp~~~ayg~~~~~-~ip~~~~l~~~v~l~~~~  154 (403)
                      .|||++|||..+.+ .|||+++|+|+|+|++++
T Consensus        86 ~ip~~laYG~~g~~~~IPp~s~LifeIeLl~v~  118 (120)
T d1q1ca1          86 TCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK  118 (120)
T ss_dssp             EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             EECHHHhCCCcCCCCCCCcCCcEEEEEEEEEEe
Confidence            99999999999976 899999999999999985

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.93  E-value=9.2e-26  Score=181.80  Aligned_cols=110  Identities=44%  Similarity=0.724  Sum_probs=104.7

Q ss_pred             ecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEE
Q 015659           43 LGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTF  122 (403)
Q Consensus        43 ~~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~  122 (403)
                      .+++||+|+++++|+|...|..||.|++||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++||+++|  
T Consensus         7 ~~d~Gl~~~il~~G~G~~~p~~gd~V~v~y~~~l~dG~v~dss~~~~~p~~f~~g~~~vi~G~~~~l~~M~~Ge~~~~--   84 (118)
T d1r9ha_           7 KKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEF--   84 (118)
T ss_dssp             TCCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEE--
T ss_pred             cCCCCEEEEEEECcCCCCCCCCCCEEEEEEEEEEcCCCEEEEccccceeeeeeccCcceeeeeeeeeeeecCCceEEE--
Confidence            357999999999999977799999999999999999999999998889999999999999999999999999999999  


Q ss_pred             EcCCCCCCCCCCCC-CCCCCCeEEEEEEeccce
Q 015659          123 TLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI  154 (403)
Q Consensus       123 ~vp~~~ayg~~~~~-~ip~~~~l~~~v~l~~~~  154 (403)
                      .|||++|||+.+.+ .|||+++|.|+|+|+++.
T Consensus        85 ~ipp~laYG~~g~~~~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          85 TIRSDYGYGDAGSPPKIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             EECHHHhCCcCCCCCccCcCCcEEEEEEEEEEe
Confidence            99999999999987 899999999999999874

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9.3e-25  Score=176.28  Aligned_cols=116  Identities=34%  Similarity=0.501  Sum_probs=105.1

Q ss_pred             eeccC--CCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCC
Q 015659          156 VVDLS--KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDG  233 (403)
Q Consensus       156 ~~dv~--~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~  233 (403)
                      +.|++  .|+++.++++++|.|+..|..++.|++|                           |++++.||++||+| ++.
T Consensus         2 ~~d~t~~~d~gv~~~i~~~G~G~~~P~~gd~V~v~---------------------------y~~~l~dG~~fdss-~~~   53 (120)
T d1q1ca1           2 GVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVH---------------------------YTGWLLDGTKFDSS-LDR   53 (120)
T ss_dssp             CEECCSSCSSSEEEEEEECCSSSCCCCTTCEEEEE---------------------------EEEEETTSCEEEES-TTS
T ss_pred             ceeccCCCCCCEEEEEEEcccCCcCCCCCCEEEEE---------------------------EEEEEcCCCEEEec-ccc
Confidence            34555  5899999999999999889999999876                           55666788999999 788


Q ss_pred             CCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeecc
Q 015659          234 EQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK  302 (403)
Q Consensus       234 ~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~~  302 (403)
                      ++|++|.+|.+.+++||+.+|.+|++||+++|+|||++|||+.+.   ++.|||+++|+|+|+|++|+.
T Consensus        54 ~~p~~f~~g~~~~i~G~~~~l~~M~~Ge~~~~~ip~~laYG~~g~---~~~IPp~s~LifeIeLl~v~~  119 (120)
T d1q1ca1          54 KDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGS---PPKIPPNATLVFEVELFEFKG  119 (120)
T ss_dssp             SSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCB---TTTBCTTCCEEEEEEEEEEEC
T ss_pred             ccceeeecCCCceeeeeeeeeccccCCcEEEEEECHHHhCCCcCC---CCCCCcCCcEEEEEEEEEEeC
Confidence            899999999999999999999999999999999999999999987   578999999999999999974

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.92  E-value=7.7e-26  Score=180.44  Aligned_cols=109  Identities=39%  Similarity=0.663  Sum_probs=84.6

Q ss_pred             cCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEE
Q 015659           44 GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFT  123 (403)
Q Consensus        44 ~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~  123 (403)
                      +++|++|+++++|.|...|..||.|+|||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++||+++|  +
T Consensus         2 ~d~Gi~~~i~~~G~g~~~P~~gd~V~v~y~~~l~dG~~~dss~~~~~p~~f~lg~~~~i~G~~~~l~~M~~Ge~~~~--~   79 (111)
T d1kt1a2           2 KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKAWDIGVATMKKGEICHL--L   79 (111)
T ss_dssp             CSCSCEEEC----CCSCCCCTTCEEEEECCCCSCC------------CEEEETTSSSSCHHHHHSTTTCCTTCCEEE--E
T ss_pred             CCCCeEEEEEEcccCCcCCCCCCEEEEEEEEEECCCCEEEEEEecceeeeeecCCCcEEeeeeeeehhccCCcEEEE--E
Confidence            57999999999999966799999999999999999999999999889999999999999999999999999999999  9


Q ss_pred             cCCCCCCCCCCCC-CCCCCCeEEEEEEeccce
Q 015659          124 LPSELRFGVEGRD-SLPPNSVVQFEVELVSWI  154 (403)
Q Consensus       124 vp~~~ayg~~~~~-~ip~~~~l~~~v~l~~~~  154 (403)
                      |||++|||..|.+ .|||+++|+|+|+|++++
T Consensus        80 ip~~layG~~g~~~~IPp~s~lif~ieLl~ik  111 (111)
T d1kt1a2          80 CKPEYAYGATGSLPKIPSNATLFFEVELLDFK  111 (111)
T ss_dssp             C----CCCTTTCTTTSCTTCCCEEEEEEEEEE
T ss_pred             ECHHHhCCCCCCCCcCCcCCeEEEEEEEEEEC
Confidence            9999999999976 899999999999999873

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.1e-25  Score=175.79  Aligned_cols=106  Identities=33%  Similarity=0.653  Sum_probs=101.0

Q ss_pred             CeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCC
Q 015659           47 GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPS  126 (403)
Q Consensus        47 g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~  126 (403)
                      |++|+++++|+|...|..||.|++||++++.||++|++|+++++|+.|.+|.+++++||+++|.+|++|++++|  .|||
T Consensus         1 Gv~~~~l~~G~G~~~p~~gd~V~v~y~g~l~dG~~~d~s~~~~~p~~~~~g~~~~i~G~~~~l~~M~~Ge~~~~--~ip~   78 (107)
T d2ppna1           1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKL--TISP   78 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEE--EECG
T ss_pred             CcEEEEEECcCCccCCCCCCEEEEEEEEEecCCeEEEeeeccceeeeEeeCcchhheeehhhhcCccCCCEEEE--EECH
Confidence            89999999999955689999999999999999999999998889999999999999999999999999999999  9999


Q ss_pred             CCCCCCCCCC-CCCCCCeEEEEEEeccce
Q 015659          127 ELRFGVEGRD-SLPPNSVVQFEVELVSWI  154 (403)
Q Consensus       127 ~~ayg~~~~~-~ip~~~~l~~~v~l~~~~  154 (403)
                      ++|||..+.+ .|||+++++|+|+|++++
T Consensus        79 ~laYG~~g~~~~IPp~s~lif~ieL~~vk  107 (107)
T d2ppna1          79 DYAYGATGHPGIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             GGTTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             HHhCCCCCCCCCCCcCCeEEEEEEEEEEC
Confidence            9999999976 899999999999999863

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=6.5e-25  Score=175.74  Aligned_cols=109  Identities=39%  Similarity=0.613  Sum_probs=103.9

Q ss_pred             ecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEE
Q 015659           43 LGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTF  122 (403)
Q Consensus        43 ~~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~  122 (403)
                      .+++||+|+++++|+|...|+.||.|++||++++.||++|++++....|+.|.++.+++++||+++|.+|++|+++++  
T Consensus         3 ~~d~gl~~~~l~~G~G~~~P~~gd~V~v~y~~~~~dG~~~ds~~~~~~~~~~~~~~~~~i~G~~~~l~~M~~G~~~~~--   80 (113)
T d1yata_           3 VIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARL--   80 (113)
T ss_dssp             ECGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEE--
T ss_pred             CccCCcEEEEEECccCCcCCCCCCEEEEEEEEEEecCcEEeccccCCceEeeeeccCceeeehhhhcccccCCCEEEE--
Confidence            468999999999999965689999999999999999999999999889999999999999999999999999999999  


Q ss_pred             EcCCCCCCCCCCCC-CCCCCCeEEEEEEeccc
Q 015659          123 TLPSELRFGVEGRD-SLPPNSVVQFEVELVSW  153 (403)
Q Consensus       123 ~vp~~~ayg~~~~~-~ip~~~~l~~~v~l~~~  153 (403)
                      .|||++|||..|.+ .||++++|+|+|+|+++
T Consensus        81 ~iP~~laYG~~g~~~~IP~~s~Lif~ieLl~I  112 (113)
T d1yata_          81 TIPGPYAYGPRGFPGLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             EechHHeecCcCCCCccCcCCeEEEEEEEEEe
Confidence            99999999999987 79999999999999976

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.92  E-value=9.4e-25  Score=175.83  Aligned_cols=113  Identities=36%  Similarity=0.588  Sum_probs=102.9

Q ss_pred             ccC--CCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCC
Q 015659          158 DLS--KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQ  235 (403)
Q Consensus       158 dv~--~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~  235 (403)
                      |++  .|+++.++++++|+|+..|..++.|++|                           |++++.||++||+| +..+.
T Consensus         3 d~t~~~d~Gl~~~il~~G~G~~~p~~gd~V~v~---------------------------y~~~l~dG~v~dss-~~~~~   54 (118)
T d1r9ha_           3 DITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVH---------------------------YVGTLENGTKFDSS-RDRGD   54 (118)
T ss_dssp             ECSTTCCSSEEEEEEECCBSSCCCCTTCEEEEE---------------------------EEEEETTSCEEEEH-HHHTS
T ss_pred             cccccCCCCEEEEEEECcCCCCCCCCCCEEEEE---------------------------EEEEEcCCCEEEEc-cccce
Confidence            444  6899999999999999899999999976                           55666788899988 78889


Q ss_pred             CeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeec
Q 015659          236 PLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (403)
Q Consensus       236 p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~  301 (403)
                      |++|.+|.+.+++||+.+|.+|++||+++|+|||++|||+.+.   ++.|||+++|+|+|+|++|.
T Consensus        55 p~~f~~g~~~vi~G~~~~l~~M~~Ge~~~~~ipp~laYG~~g~---~~~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          55 QFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGS---PPKIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             CEEEETTTTSSCHHHHHHHTTCCBTCEEEEEECGGGTTTTTCB---TTTBCTTCCEEEEEEEEEEE
T ss_pred             eeeeeccCcceeeeeeeeeeeecCCceEEEEECHHHhCCcCCC---CCccCcCCcEEEEEEEEEEe
Confidence            9999999999999999999999999999999999999999987   56899999999999999985

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=9.2e-25  Score=193.86  Aligned_cols=115  Identities=31%  Similarity=0.600  Sum_probs=108.8

Q ss_pred             ccCCCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCccc
Q 015659           35 LKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKK  114 (403)
Q Consensus        35 ~~~~~~~~~~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~  114 (403)
                      ++...++..+++|++|+++++|+| ..|..||.|.|||++++.||++|++|+.++.|+.|.+|  ++|+||+++|.+|++
T Consensus        96 ~~~~~~v~~~~sGl~y~v~~~G~G-~~p~~gd~v~v~y~g~l~dG~~fd~s~~~~~p~~~~~~--~vi~g~~e~l~~m~~  172 (210)
T d1q6ha_          96 FAKEKGVKTSSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKK  172 (210)
T ss_dssp             HHHSTTEEECTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEGG--GSCHHHHHHGGGSCT
T ss_pred             hcccCceEEccCceEEEEeeCCCC-CCCCCCceEEEEEEEEEcCCCEEeecccCCCcceeccC--ccchhHHHHHhhccC
Confidence            345567888999999999999999 89999999999999999999999999999999999997  799999999999999


Q ss_pred             CcEEEEEEEcCCCCCCCCCCCCCCCCCCeEEEEEEeccce
Q 015659          115 RECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWI  154 (403)
Q Consensus       115 Ge~~~v~~~vp~~~ayg~~~~~~ip~~~~l~~~v~l~~~~  154 (403)
                      |++++|  +|||++|||+.|.+.|||+++|+|+|+|++++
T Consensus       173 G~k~~~--~iP~~laYG~~g~~~Ippns~Lvfevel~~ik  210 (210)
T d1q6ha_         173 GGKIKL--VIPPELAYGKAGVPGIPPNSTLVFDVELLDVK  210 (210)
T ss_dssp             TCEEEE--EECGGGTTTTTCBTTBCTTCCEEEEEEEEEEC
T ss_pred             CCEEEE--EECHHHCcCCCCCCCCCcCCcEEEEEEEEEEC
Confidence            999999  99999999999999999999999999999863

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.91  E-value=1.9e-24  Score=191.09  Aligned_cols=119  Identities=29%  Similarity=0.420  Sum_probs=109.3

Q ss_pred             cCCCccCCCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhc
Q 015659           31 SAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGII  110 (403)
Q Consensus        31 ~~~~~~~~~~~~~~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~  110 (403)
                      +...++...++..+++||+|+++++|+| .+|..||.|.|||++++.||++|++|+.++.|++|.+|  ++++||+++|.
T Consensus        83 fl~~~~~~~~v~~~~sGl~y~v~~~G~G-~~p~~~d~v~v~y~g~l~dg~~f~~s~~~~~p~~~~~~--~~i~G~~e~l~  159 (204)
T d1fd9a_          83 FLTENKNKPGVVVLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVS--QVIPGWTEALQ  159 (204)
T ss_dssp             HHHHHHHSTTEEECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEGG--GSCHHHHHHHT
T ss_pred             HHHhcccCCceEEecCccEEEEeecCCC-cccCCCCEEEEEEEEEECCCCEecccccCCCCceecCC--ccchhHHHHhc
Confidence            3334445567888899999999999999 89999999999999999999999999988899998877  79999999999


Q ss_pred             CcccCcEEEEEEEcCCCCCCCCCCCC-CCCCCCeEEEEEEeccce
Q 015659          111 TMKKRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI  154 (403)
Q Consensus       111 ~m~~Ge~~~v~~~vp~~~ayg~~~~~-~ip~~~~l~~~v~l~~~~  154 (403)
                      +|++|++++|  +|||++|||..|.+ .|||+++|+|+|+|+++.
T Consensus       160 ~m~~G~~~~~--~iP~~laYG~~g~~~~Ipp~s~l~feveL~~i~  202 (204)
T d1fd9a_         160 LMPAGSTWEI--YVPSGLAYGPRSVGGPIGPNETLIFKIHLISVK  202 (204)
T ss_dssp             TCCTTCEEEE--EECGGGTTTTCCCSSSCCTTCCEEEEEEEEEEE
T ss_pred             CCCCCCEEEE--EEChHHCcCCCCCCCCcCcCCcEEEEEEEEEEE
Confidence            9999999999  99999999999976 799999999999999885

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.90  E-value=1.7e-24  Score=172.55  Aligned_cols=110  Identities=36%  Similarity=0.574  Sum_probs=82.1

Q ss_pred             CCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCCCeEEE
Q 015659          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (403)
Q Consensus       161 ~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~p~~~~  240 (403)
                      .|.++.++++++|.|...|..++.|++||                           ++++.||++||+| ++.++|++|.
T Consensus         2 ~d~Gi~~~i~~~G~g~~~P~~gd~V~v~y---------------------------~~~l~dG~~~dss-~~~~~p~~f~   53 (111)
T d1kt1a2           2 KDRGVLKIVKRVGHGEETPMIGDRVYVHY---------------------------NGKLANGKKFDSS-HDRNEPFVFS   53 (111)
T ss_dssp             CSCSCEEEC----CCSCCCCTTCEEEEEC---------------------------CCCSCC-------------CEEEE
T ss_pred             CCCCeEEEEEEcccCCcCCCCCCEEEEEE---------------------------EEEECCCCEEEEE-Eecceeeeee
Confidence            47899999999999998899999998765                           4556678889988 7888999999


Q ss_pred             cCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeec
Q 015659          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (403)
Q Consensus       241 lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~  301 (403)
                      +|.+.+++||+.+|.+|++||+++|+|||++|||+.+.   ++.|||+++|+|+|+|++|+
T Consensus        54 lg~~~~i~G~~~~l~~M~~Ge~~~~~ip~~layG~~g~---~~~IPp~s~lif~ieLl~ik  111 (111)
T d1kt1a2          54 IGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGATGS---LPKIPSNATLFFEVELLDFK  111 (111)
T ss_dssp             TTSSSSCHHHHHSTTTCCTTCCEEEEC----CCCTTTC---TTTSCTTCCCEEEEEEEEEE
T ss_pred             cCCCcEEeeeeeeehhccCCcEEEEEECHHHhCCCCCC---CCcCCcCCeEEEEEEEEEEC
Confidence            99999999999999999999999999999999999987   57899999999999999985

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.9e-24  Score=167.27  Aligned_cols=107  Identities=27%  Similarity=0.515  Sum_probs=97.7

Q ss_pred             ceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCCCeEEEcCC
Q 015659          164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDE  243 (403)
Q Consensus       164 ~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~  243 (403)
                      |+.++++++|+|+..|..++.|++|                           |++++.||++||++ ++.+.|++|.+|.
T Consensus         1 Gv~~~~l~~G~G~~~p~~gd~V~v~---------------------------y~g~l~dG~~~d~s-~~~~~p~~~~~g~   52 (107)
T d2ppna1           1 GVQVETISPGDGRTFPKRGQTCVVH---------------------------YTGMLEDGKKFDSS-RDRNKPFKFMLGK   52 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEE---------------------------EEEEETTSCEEEEH-HHHTSCEEEETTS
T ss_pred             CcEEEEEECcCCccCCCCCCEEEEE---------------------------EEEEecCCeEEEee-eccceeeeEeeCc
Confidence            5778999999999889999999876                           55666788899988 7888999999999


Q ss_pred             CCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeec
Q 015659          244 EQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (403)
Q Consensus       244 ~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~  301 (403)
                      +++++||+.+|.+|++||+++|+|||++|||+.+.   ++.|||+++|+|+|+|++|+
T Consensus        53 ~~~i~G~~~~l~~M~~Ge~~~~~ip~~laYG~~g~---~~~IPp~s~lif~ieL~~vk  107 (107)
T d2ppna1          53 QEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGH---PGIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             CCSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCB---TTTBCTTCCEEEEEEEEEEC
T ss_pred             chhheeehhhhcCccCCCEEEEEECHHHhCCCCCC---CCCCCcCCeEEEEEEEEEEC
Confidence            99999999999999999999999999999999887   56799999999999999985

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.3e-23  Score=168.86  Aligned_cols=105  Identities=41%  Similarity=0.676  Sum_probs=98.1

Q ss_pred             CeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCC-------CCCCeeEEeCCCccchhHHHhhcCcccCcEEE
Q 015659           47 GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRD-------RYDPLTFKLGTGQVATGLDNGIITMKKRECAV  119 (403)
Q Consensus        47 g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~-------~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~  119 (403)
                      .+.|+|+++|+|...|+.||.|+|||++++.||++|++|+.       .++|+.|.+|.+++++||+++|.+|++||+++
T Consensus         2 ~~~k~vl~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~~~~~~~~p~~f~lg~~~~i~Gl~~~v~~M~~Ge~~~   81 (116)
T d1pbka_           2 KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKAR   81 (116)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCSSCCTTTSSCCEEEETTTTSSCHHHHHHHTTCCTTCEEE
T ss_pred             cceEEEEecCCCCCCCCCCCEEEEEEEEEECCCCEeecccccccccccCCCceeeeecccccccchheechhhcCCcEEE
Confidence            57899999999966799999999999999999999999865       34799999999999999999999999999999


Q ss_pred             EEEEcCCCCCCCCCCCC--CCCCCCeEEEEEEeccc
Q 015659          120 FTFTLPSELRFGVEGRD--SLPPNSVVQFEVELVSW  153 (403)
Q Consensus       120 v~~~vp~~~ayg~~~~~--~ip~~~~l~~~v~l~~~  153 (403)
                      |  +|||++|||+.+.+  .||++++|+|+|+|+++
T Consensus        82 ~--~ip~~~ayG~~g~~~~~Ipp~s~L~feieLl~v  115 (116)
T d1pbka_          82 L--EIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDI  115 (116)
T ss_dssp             E--EECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEE
T ss_pred             E--EECHHHhCCccCCCCCCcCcCCeEEEEEEEEEE
Confidence            9  99999999999976  79999999999999976

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=4.6e-23  Score=164.81  Aligned_cols=108  Identities=26%  Similarity=0.404  Sum_probs=99.5

Q ss_pred             CcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCCCeEEEc
Q 015659          162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFIT  241 (403)
Q Consensus       162 d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~p~~~~l  241 (403)
                      |+++.++++++|.|+..|..++.|++|                           |++++.||++||++ +....|+.|.+
T Consensus         5 d~gl~~~~l~~G~G~~~P~~gd~V~v~---------------------------y~~~~~dG~~~ds~-~~~~~~~~~~~   56 (113)
T d1yata_           5 EGNVKIDRISPGDGATFPKTGDLVTIH---------------------------YTGTLENGQKFDSS-VDRGSPFQCNI   56 (113)
T ss_dssp             GGGCEEEEEECCCSSCCCCTTCEEEEE---------------------------EEEEETTSCEEEES-TTTTCCEEEET
T ss_pred             cCCcEEEEEECccCCcCCCCCCEEEEE---------------------------EEEEEecCcEEecc-ccCCceEeeee
Confidence            678999999999999889999999976                           55666688899998 78889999999


Q ss_pred             CCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeee
Q 015659          242 DEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF  300 (403)
Q Consensus       242 G~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i  300 (403)
                      |.+.+++||+.+|.+|++|++++|++||++|||+.+.   ++.|||+++|+|+|+|++|
T Consensus        57 ~~~~~i~G~~~~l~~M~~G~~~~~~iP~~laYG~~g~---~~~IP~~s~Lif~ieLl~I  112 (113)
T d1yata_          57 GVGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGF---PGLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             TSSSSCHHHHHHGGGCCTTCEEEEEECGGGTTTTTCB---TTTBCTTCCEEEEEEEEEE
T ss_pred             ccCceeeehhhhcccccCCCEEEEEechHHeecCcCC---CCccCcCCeEEEEEEEEEe
Confidence            9999999999999999999999999999999999997   5679999999999999987

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.2e-22  Score=163.11  Aligned_cols=109  Identities=36%  Similarity=0.504  Sum_probs=93.4

Q ss_pred             ceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecC------CCCCCCe
Q 015659          164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKG------YDGEQPL  237 (403)
Q Consensus       164 ~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~------~~~~~p~  237 (403)
                      .+.|+|+++|.|...|..++.|++||+                           +++.||++||++.      ...++|+
T Consensus         2 ~~~k~vl~~G~G~~~P~~gd~V~v~y~---------------------------~~l~dG~~fdss~~~~~~~~~~~~p~   54 (116)
T d1pbka_           2 KYTKSVLKKGDKTNFPKKGDVVHCWYT---------------------------GTLQDGTVFDTNIQTSAKKKKNAKPL   54 (116)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEE---------------------------EECTTSCEEEECCCSSCCTTTSSCCE
T ss_pred             cceEEEEecCCCCCCCCCCCEEEEEEE---------------------------EEECCCCEeecccccccccccCCCce
Confidence            467899999999988999999998755                           4455666676662      1245799


Q ss_pred             EEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeec
Q 015659          238 EFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (403)
Q Consensus       238 ~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~  301 (403)
                      .|.+|.+.+++||+.+|.+|++||+++|+|||++|||+.+..  ...|||+++|+|+|+|++|+
T Consensus        55 ~f~lg~~~~i~Gl~~~v~~M~~Ge~~~~~ip~~~ayG~~g~~--~~~Ipp~s~L~feieLl~ve  116 (116)
T d1pbka_          55 SFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQP--DAKIPPNAKLTFEVELVDID  116 (116)
T ss_dssp             EEETTTTSSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBG--GGTBCTTCCEEEEEEEEEEC
T ss_pred             eeeecccccccchheechhhcCCcEEEEEECHHHhCCccCCC--CCCcCcCCeEEEEEEEEEEC
Confidence            999999999999999999999999999999999999998873  25799999999999999985

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.89  E-value=1.1e-23  Score=171.73  Aligned_cols=111  Identities=34%  Similarity=0.578  Sum_probs=102.9

Q ss_pred             ceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhc------Ccc
Q 015659           40 ERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGII------TMK  113 (403)
Q Consensus        40 ~~~~~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~------~m~  113 (403)
                      ++.++|+||+|+++++|+| ++|..||.|.|||++++.+|++|++|+..+.|+.|.+|.+.++++|++++.      .|+
T Consensus         2 ~~~~~psGl~y~~~~~G~G-~~p~~gd~V~v~y~g~l~~G~~fdss~~~~~p~~~~~g~~~~i~g~~~~i~g~~~l~~M~   80 (125)
T d1u79a_           2 EFSVSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPML   80 (125)
T ss_dssp             CCEECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCB
T ss_pred             CcEECCCCCEEEEEEeccC-CCCCCCCEEEEEEEeeecCCcEEecccccCcceeEecCccccccchhhhccchhhccccc
Confidence            4577899999999999999 899999999999999999999999999888999999999999999998775      599


Q ss_pred             cCcEEEEEEEcCCCCCCCCCCCC------CCCCCCeEEEEEEeccc
Q 015659          114 KRECAVFTFTLPSELRFGVEGRD------SLPPNSVVQFEVELVSW  153 (403)
Q Consensus       114 ~Ge~~~v~~~vp~~~ayg~~~~~------~ip~~~~l~~~v~l~~~  153 (403)
                      +|++++|  .|||++|||.+|..      .||++++|+|+|+|+.+
T Consensus        81 ~G~k~~v--~iP~~laYG~~G~~~~~~~~~IPp~s~LifeieLl~~  124 (125)
T d1u79a_          81 TGGKRTL--RIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  124 (125)
T ss_dssp             TTCEEEE--EECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             CCCEEEE--EECHHHCCCCCCcCCcCCCCcCCcCCeEEEEEEEEEe
Confidence            9999999  99999999998742      69999999999999864

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.88  E-value=2.5e-23  Score=176.25  Aligned_cols=118  Identities=29%  Similarity=0.483  Sum_probs=105.6

Q ss_pred             CccCCCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcc
Q 015659           34 PLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMK  113 (403)
Q Consensus        34 ~~~~~~~~~~~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~  113 (403)
                      .+....++..+|+||+|+++++|.|...|..||.|.|||++++.||++|++++..+.|  |.++.+.+++||+++|.+|+
T Consensus        22 ~~~~~~~~~~~~sGl~y~il~~G~G~~~P~~gd~V~v~Y~g~l~dG~~fds~~~~~~p--~~~~~~~~i~G~~e~l~~M~   99 (160)
T d1jvwa_          22 QKAAQPDAVKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKP--TTFRPNEVIKGWTEALQLMR   99 (160)
T ss_dssp             HHHHSTTEEECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEHHHHTSC--EEECGGGSCHHHHHHHTTCC
T ss_pred             HhccCCCCEECCCCCEEEEEECcccccCCCCCcceEEEEEEEEccCCeeeeeccccCc--cccCccccchhHHHHhcCcc
Confidence            3445566777899999999999999557899999999999999999999999876666  55667799999999999999


Q ss_pred             cCcEEEEEEEcCCCCCCCCCCCC-CCCCCCeEEEEEEecccee
Q 015659          114 KRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWIT  155 (403)
Q Consensus       114 ~Ge~~~v~~~vp~~~ayg~~~~~-~ip~~~~l~~~v~l~~~~~  155 (403)
                      +|++++|  +|||++|||..|.+ .||++++|+|+|+|+++..
T Consensus       100 ~Ge~~~v--~iPp~laYG~~g~~~~IPp~s~LifeIeLl~i~~  140 (160)
T d1jvwa_         100 EGDRWRL--FIPYDLAYGVTGGGGMIPPYSPLEFDVELISIKD  140 (160)
T ss_dssp             TTCEEEE--EECGGGTTTTTCSSSSSCTTCCEEEEEEEEEEGG
T ss_pred             ccceeEE--EeCHHHCcCCCCCCCCcCcCCcEEEEEEEEEEec
Confidence            9999999  99999999999876 8999999999999999864

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.87  E-value=1e-21  Score=157.54  Aligned_cols=110  Identities=30%  Similarity=0.530  Sum_probs=95.4

Q ss_pred             eccCCCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCCC
Q 015659          157 VDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQP  236 (403)
Q Consensus       157 ~dv~~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~p  236 (403)
                      .|++.|+++.++++++|.|+..|..++.|++||+.++                            +|++|+++      +
T Consensus         2 e~~~~D~gi~k~il~~G~G~~~p~~gd~V~v~y~g~~----------------------------~g~~~~~~------~   47 (115)
T d1kt1a3           2 EDLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRC----------------------------GGRVFDCR------D   47 (115)
T ss_dssp             EETTSSSSEEEEEEECCCCSSCCCTTCEEEEEEEEEE----------------------------TTEEEEEE------E
T ss_pred             CccccCCCEEEEEEEeecCCCCCCCCCEEEEEEEEEe----------------------------CCcccccc------c
Confidence            5788999999999999999999999999998876543                            45666655      5


Q ss_pred             eEEEcCCC---CcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeecc
Q 015659          237 LEFITDEE---QVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK  302 (403)
Q Consensus       237 ~~~~lG~~---~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~~  302 (403)
                      ..|.++.+   .+|+||+.+|.+|++||+++|+|||++|||+.+.+  +..|||+++|+|+|+|++|++
T Consensus        48 ~~~~~~~~~~~~vi~G~~~~l~~M~~Ge~~~v~ip~~~ayG~~g~~--~~~Ipp~a~l~f~ieLl~~~k  114 (115)
T d1kt1a3          48 VAFTVGEGEDHDIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKP--KFGIEPNAELIYEVTLKSFEK  114 (115)
T ss_dssp             EEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGSSCTTCBT--TTTBCTTCCEEEEEEEEEEEC
T ss_pred             cCceeeeccccccCchhHhhhccchhhceeEEEeCHHHCcCCCCCC--CCCcCcCCeEEEEEEEEEEEe
Confidence            67777753   68999999999999999999999999999999872  247999999999999999986

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.85  E-value=2.3e-21  Score=163.99  Aligned_cols=116  Identities=22%  Similarity=0.356  Sum_probs=98.8

Q ss_pred             CCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCCCeEEE
Q 015659          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (403)
Q Consensus       161 ~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~p~~~~  240 (403)
                      .+.|+..+++++|.|...|..++.|.+|                           |+|++.||++||++ +..+.|+.  
T Consensus        32 ~~sGl~y~il~~G~G~~~P~~gd~V~v~---------------------------Y~g~l~dG~~fds~-~~~~~p~~--   81 (160)
T d1jvwa_          32 LPSGLVFQRIARGSGKRAPAIDDKCEVH---------------------------YTGRLRDGTVFDSS-RERGKPTT--   81 (160)
T ss_dssp             CTTSCEEEEEECCCCSBCCCTTCCEEEE---------------------------EEEECTTSCEEEEH-HHHTSCEE--
T ss_pred             CCCCCEEEEEECcccccCCCCCcceEEE---------------------------EEEEEccCCeeeee-ccccCccc--
Confidence            4568999999999998889999999876                           55666788889888 66667755  


Q ss_pred             cCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeccCcCcccc
Q 015659          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEM  309 (403)
Q Consensus       241 lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~~~~~~~~m  309 (403)
                      ++.+.+|+||+.+|.+|++||+++|+|||++|||+.+.   ++.|||+++|+|+|+|++|++......+
T Consensus        82 ~~~~~~i~G~~e~l~~M~~Ge~~~v~iPp~laYG~~g~---~~~IPp~s~LifeIeLl~i~~~~~~~~~  147 (160)
T d1jvwa_          82 FRPNEVIKGWTEALQLMREGDRWRLFIPYDLAYGVTGG---GGMIPPYSPLEFDVELISIKDGGKGRTA  147 (160)
T ss_dssp             ECGGGSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCS---SSSSCTTCCEEEEEEEEEEGGGCCSCBH
T ss_pred             cCccccchhHHHHhcCccccceeEEEeCHHHCcCCCCC---CCCcCcCCcEEEEEEEEEEecCCCCCCh
Confidence            55569999999999999999999999999999999886   5679999999999999999876555443

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.85  E-value=2e-21  Score=171.49  Aligned_cols=108  Identities=25%  Similarity=0.395  Sum_probs=97.6

Q ss_pred             CCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCCCeEEE
Q 015659          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (403)
Q Consensus       161 ~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~p~~~~  240 (403)
                      -+.|+..+++++|.|. .|..++.|.+|                           |+|++.||++||++ +.++.|++|.
T Consensus        96 ~~sGl~y~v~~~G~G~-~p~~~d~v~v~---------------------------y~g~l~dg~~f~~s-~~~~~p~~~~  146 (204)
T d1fd9a_          96 LPSGLQYKVINSGNGV-KPGKSDTVTVE---------------------------YTGRLIDGTVFDST-EKTGKPATFQ  146 (204)
T ss_dssp             CTTSCEEEEEECCCSC-CCCTTCEEEEE---------------------------EEEEETTSCEEEEH-HHHCSCEEEE
T ss_pred             ecCccEEEEeecCCCc-ccCCCCEEEEE---------------------------EEEEECCCCEeccc-ccCCCCceec
Confidence            3568899999999986 68888888865                           66777889999999 7889999999


Q ss_pred             cCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeecc
Q 015659          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK  302 (403)
Q Consensus       241 lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~~  302 (403)
                      +|  .+||||+.+|.+|++|++++|+|||++|||+.|.   ++.|||+++|+|+|+|++|++
T Consensus       147 ~~--~~i~G~~e~l~~m~~G~~~~~~iP~~laYG~~g~---~~~Ipp~s~l~feveL~~i~k  203 (204)
T d1fd9a_         147 VS--QVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSV---GGPIGPNETLIFKIHLISVKK  203 (204)
T ss_dssp             GG--GSCHHHHHHHTTCCTTCEEEEEECGGGTTTTCCC---SSSCCTTCCEEEEEEEEEEEC
T ss_pred             CC--ccchhHHHHhcCCCCCCEEEEEEChHHCcCCCCC---CCCcCcCCcEEEEEEEEEEEc
Confidence            87  7999999999999999999999999999999987   578999999999999999986

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=4.9e-21  Score=169.58  Aligned_cols=106  Identities=31%  Similarity=0.549  Sum_probs=96.1

Q ss_pred             CCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCCCeEEE
Q 015659          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (403)
Q Consensus       161 ~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~p~~~~  240 (403)
                      ...|+..+++++|.|. .|..++.|++|                           |+|++.||++||+| +.++.|+.|.
T Consensus       105 ~~sGl~y~v~~~G~G~-~p~~gd~v~v~---------------------------y~g~l~dG~~fd~s-~~~~~p~~~~  155 (210)
T d1q6ha_         105 SSTGLVYQVVEAGKGE-APKDSDTVVVN---------------------------YKGTLIDGKEFDNS-YTRGEPLSFR  155 (210)
T ss_dssp             CTTSCEEEEEECCSSC-CCCTTCEEEEE---------------------------EEEEETTSCEEEEG-GGGTSCEEEE
T ss_pred             ccCceEEEEeeCCCCC-CCCCCceEEEE---------------------------EEEEEcCCCEEeec-ccCCCcceec
Confidence            4568899999999984 88889998865                           67778899999999 8889999999


Q ss_pred             cCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeec
Q 015659          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (403)
Q Consensus       241 lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~  301 (403)
                      +|  ++||||+.+|.+|++|++++|+|||++|||+.+.    +.|||+++|+|+|+|++|+
T Consensus       156 ~~--~vi~g~~e~l~~m~~G~k~~~~iP~~laYG~~g~----~~Ippns~Lvfevel~~ik  210 (210)
T d1q6ha_         156 LD--GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGV----PGIPPNSTLVFDVELLDVK  210 (210)
T ss_dssp             GG--GSCHHHHHHGGGSCTTCEEEEEECGGGTTTTTCB----TTBCTTCCEEEEEEEEEEC
T ss_pred             cC--ccchhHHHHHhhccCCCEEEEEECHHHCcCCCCC----CCCCcCCcEEEEEEEEEEC
Confidence            97  7999999999999999999999999999999997    4599999999999999985

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.84  E-value=4.7e-21  Score=153.67  Aligned_cols=104  Identities=28%  Similarity=0.567  Sum_probs=93.6

Q ss_pred             ecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCC---CccchhHHHhhcCcccCcEEE
Q 015659           43 LGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGT---GQVATGLDNGIITMKKRECAV  119 (403)
Q Consensus        43 ~~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~---~~~~~gl~~al~~m~~Ge~~~  119 (403)
                      +.++||.|+++++|+|...|..||.|+|||+++. +|++|+++     +..|.++.   +.+++||+++|.+|++|++++
T Consensus         5 ~~D~gi~k~il~~G~G~~~p~~gd~V~v~y~g~~-~g~~~~~~-----~~~~~~~~~~~~~vi~G~~~~l~~M~~Ge~~~   78 (115)
T d1kt1a3           5 LEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRC-GGRVFDCR-----DVAFTVGEGEDHDIPIGIDKALEKMQREEQCI   78 (115)
T ss_dssp             TSSSSEEEEEEECCCCSSCCCTTCEEEEEEEEEE-TTEEEEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEE
T ss_pred             ccCCCEEEEEEEeecCCCCCCCCCEEEEEEEEEe-CCcccccc-----ccCceeeeccccccCchhHhhhccchhhceeE
Confidence            4699999999999999778999999999999997 88888764     45677765   358999999999999999999


Q ss_pred             EEEEcCCCCCCCCCCCC--CCCCCCeEEEEEEeccce
Q 015659          120 FTFTLPSELRFGVEGRD--SLPPNSVVQFEVELVSWI  154 (403)
Q Consensus       120 v~~~vp~~~ayg~~~~~--~ip~~~~l~~~v~l~~~~  154 (403)
                      |  +|||++|||..+.+  .|||+++++|+|+|+++.
T Consensus        79 v--~ip~~~ayG~~g~~~~~Ipp~a~l~f~ieLl~~~  113 (115)
T d1kt1a3          79 L--HLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFE  113 (115)
T ss_dssp             E--EECGGGSSCTTCBTTTTBCTTCCEEEEEEEEEEE
T ss_pred             E--EeCHHHCcCCCCCCCCCcCcCCeEEEEEEEEEEE
Confidence            9  99999999999976  699999999999999985

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=7.2e-20  Score=147.07  Aligned_cols=109  Identities=34%  Similarity=0.523  Sum_probs=91.2

Q ss_pred             CCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCCCeEEE
Q 015659          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (403)
Q Consensus       161 ~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~p~~~~  240 (403)
                      .|+++.++++++|.|+..|..++.|++||+.++.+++                            |+++      +..|.
T Consensus         6 ~D~gi~~~il~~G~G~~~p~~gd~V~v~y~g~~~~~~----------------------------~~~~------~~~~~   51 (117)
T d1q1ca2           6 EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKL----------------------------FDQR------ELRFE   51 (117)
T ss_dssp             CSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEETTEE----------------------------EEEE------EEEEE
T ss_pred             CCCCEEEEEEeeecCCCCCCCCCEEEEEEEEEeCCCc----------------------------Eeec------cccce
Confidence            7899999999999999999999999998777665442                            3332      34455


Q ss_pred             cCC---CCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeccCcC
Q 015659          241 TDE---EQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKV  305 (403)
Q Consensus       241 lG~---~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~~~~~  305 (403)
                      .+.   ..+++||+.+|.+|++||+++|+|||++|||+.+.+  ...|||+++|+|+|+|++|++.++
T Consensus        52 ~~~~~~~~~i~Gl~~~l~~M~~Ge~~~i~ip~~~ayG~~g~~--~~~Ipp~s~l~f~veL~~~~~~kd  117 (117)
T d1q1ca2          52 IGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKE--KFQIPPNAELKYELHLKSFEKAKE  117 (117)
T ss_dssp             TTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBG--GGTBCTTCCEEEEEEEEEEECCCC
T ss_pred             eeecceeeeCcHHHHhhhcchhhCeEEEEECHHHhCcccCCC--CCccCcCCeEEEEEEEEEEEeCCC
Confidence            554   378999999999999999999999999999998873  347999999999999999997653

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=4e-20  Score=148.57  Aligned_cols=105  Identities=28%  Similarity=0.532  Sum_probs=91.0

Q ss_pred             cCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCC---CccchhHHHhhcCcccCcEEEE
Q 015659           44 GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGT---GQVATGLDNGIITMKKRECAVF  120 (403)
Q Consensus        44 ~~~g~~~~vl~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~---~~~~~gl~~al~~m~~Ge~~~v  120 (403)
                      .++||+|+|+++|.|+..|..||.|+|||++++.+|. ++++     +..|..+.   .++++||+++|.+|++|+++++
T Consensus         6 ~D~gi~~~il~~G~G~~~p~~gd~V~v~y~g~~~~~~-~~~~-----~~~~~~~~~~~~~~i~Gl~~~l~~M~~Ge~~~i   79 (117)
T d1q1ca2           6 EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKL-FDQR-----ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIV   79 (117)
T ss_dssp             CSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEETTEE-EEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEE
T ss_pred             CCCCEEEEEEeeecCCCCCCCCCEEEEEEEEEeCCCc-Eeec-----cccceeeecceeeeCcHHHHhhhcchhhCeEEE
Confidence            5699999999999997789999999999999986664 5443     34455554   3689999999999999999999


Q ss_pred             EEEcCCCCCCCCCCCC--CCCCCCeEEEEEEeccceee
Q 015659          121 TFTLPSELRFGVEGRD--SLPPNSVVQFEVELVSWITV  156 (403)
Q Consensus       121 ~~~vp~~~ayg~~~~~--~ip~~~~l~~~v~l~~~~~~  156 (403)
                        +|||++|||..|.+  .|||+++++|+|+|+++...
T Consensus        80 --~ip~~~ayG~~g~~~~~Ipp~s~l~f~veL~~~~~~  115 (117)
T d1q1ca2          80 --YLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKA  115 (117)
T ss_dssp             --EECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEECC
T ss_pred             --EECHHHhCcccCCCCCccCcCCeEEEEEEEEEEEeC
Confidence              99999999999876  79999999999999998643

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.79  E-value=1.5e-19  Score=146.87  Aligned_cols=111  Identities=23%  Similarity=0.337  Sum_probs=95.2

Q ss_pred             CCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeecCCCCceeEEeeceEEEEeeccceEEeecCCCCCCCeEEE
Q 015659          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (403)
Q Consensus       161 ~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~~~~~g~~~~~~~v~y~g~~~~g~~fd~s~~~~~~p~~~~  240 (403)
                      ...++..+++++|.|. .|..++.|++|                           |++++.||++||+| +..+.|+.|.
T Consensus         6 ~psGl~y~~~~~G~G~-~p~~gd~V~v~---------------------------y~g~l~~G~~fdss-~~~~~p~~~~   56 (125)
T d1u79a_           6 SPSGLAFCDKVVGYGP-EAVKGQLIKAH---------------------------YVGKLENGKVFDSS-YNRGKPLTFR   56 (125)
T ss_dssp             CTTSCEEEEEECCSSC-BCCTTCEEEEE---------------------------EEEECTTSCEEEEH-HHHTSCEEEE
T ss_pred             CCCCCEEEEEEeccCC-CCCCCCEEEEE---------------------------EEeeecCCcEEecc-cccCcceeEe
Confidence            3457889999999995 79999999876                           55666788999998 7788999999


Q ss_pred             cCCCCcchHHHHHHc------ccCCCcEEEEEEcCCCCCCCccccc--CCCCCCCCCeEEEEEEEeee
Q 015659          241 TDEEQVIAGLDRVAA------TMKKEEWAIVTINHEYGFGNVEAKR--DLATIPSCAKLYYEVEMMDF  300 (403)
Q Consensus       241 lG~~~v~~gl~~~l~------~m~~Ge~~~v~i~~~~~yg~~~~~~--~~~~ip~~~~l~f~iel~~i  300 (403)
                      +|.+.++++|+.++.      +|++|++++|+|||++|||+.+...  ....|||+++|+|+|||+++
T Consensus        57 ~g~~~~i~g~~~~i~g~~~l~~M~~G~k~~v~iP~~laYG~~G~~~~~~~~~IPp~s~LifeieLl~~  124 (125)
T d1u79a_          57 IGVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  124 (125)
T ss_dssp             TTSSSSCHHHHHHHHCBTTBCCCBTTCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             cCccccccchhhhccchhhcccccCCCEEEEEECHHHCCCCCCcCCcCCCCcCCcCCeEEEEEEEEEe
Confidence            999999999999875      5999999999999999999987521  13469999999999999986

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

Probab=99.71  E-value=6e-19  Score=147.45  Aligned_cols=126  Identities=23%  Similarity=0.464  Sum_probs=91.4

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEeccCC-------------CCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCCCC
Q 015659           62 PEFGDEVTIHYVGTLLDGTKFDSTRD-------------RYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSEL  128 (403)
Q Consensus        62 ~~~gd~V~v~y~~~~~~g~~~~ss~~-------------~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~~~  128 (403)
                      +++||.|.+||++++.||++|++|++             .+.|+.|.+|.++++|||+++|.+|++|++++|  .|||+.
T Consensus         2 v~~G~~V~v~Y~~~~~~G~~fdsT~e~~~~~~~~~~~~~~~~P~~f~~G~g~~ipglE~al~gm~~Ge~~~v--~i~p~~   79 (151)
T d1ix5a_           2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTV--KIPAEK   79 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEE--EECTTT
T ss_pred             ccCCCEEEEEEEEEECCCCEEEeCchHhcccccccccccCCCCEEEEecCCCccHHHHHHHHhhcCCceeEE--EeCHHH
Confidence            68999999999999999999999964             357999999999999999999999999999999  999999


Q ss_pred             CCCCCCCC---CCCCCCeEEEEEEeccceeeeccCCCcceeeEEeecCCcCCCCCCCCceEEEEEeeeCCCceeec
Q 015659          129 RFGVEGRD---SLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK  201 (403)
Q Consensus       129 ayg~~~~~---~ip~~~~l~~~v~l~~~~~~~dv~~d~~v~k~il~~G~g~~~p~~~~~V~i~y~~~l~~~~~v~~  201 (403)
                      |||+++..   .+|........+++...   .....+ +...++++-        ..+.|++++||||+|.++.|+
T Consensus        80 ayG~~d~~~v~~vp~~~f~~~~~~~~~~---~~~~~~-~~~~~V~~v--------~~~~v~vD~NHPlAG~~L~f~  143 (151)
T d1ix5a_          80 AYGNRNEMLIQKIPRDAFKEADFEPEEG---MVILAE-GIPATITEV--------TDNEVTLDFNHELAGKDLVFT  143 (151)
T ss_dssp             SSCSCCSTTBCCEETHHHHTSTTCCCTT---EEEESS-SCEEEEEEE--------ETTEEEEECCCSSTTCCEEEE
T ss_pred             hccccccCccceehhhhccccccccccc---eEEecC-CCceEEEEE--------cCCEEEEECCCcCCCCeEEEE
Confidence            99999865   22211100000000000   000111 112222221        457899999999999998875

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.70  E-value=3.9e-17  Score=139.35  Aligned_cols=98  Identities=35%  Similarity=0.582  Sum_probs=94.0

Q ss_pred             cCccccCchHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCH
Q 015659          304 KVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY  383 (403)
Q Consensus       304 ~~~~~m~~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~  383 (403)
                      ++.|.|+.+|+++.+..+++.||.+|+.|+|..|+..|++||.+++.......++......+...+|+|+|+||+++++|
T Consensus         1 ~e~~~m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~   80 (168)
T d1kt1a1           1 KESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY   80 (168)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhc
Confidence            47899999999999999999999999999999999999999999999888888888899999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccccC
Q 015659          384 QGAIELCSKVIVEREAAR  401 (403)
Q Consensus       384 ~~ai~~~~~aL~~dp~~~  401 (403)
                      .+|+.+|++||+++|.|.
T Consensus        81 ~~Ai~~~~~al~l~p~~~   98 (168)
T d1kt1a1          81 TKAVECCDKALGLDSANE   98 (168)
T ss_dssp             HHHHHHHHHHHHHCTTCH
T ss_pred             ccchhhhhhhhhcccchH
Confidence            999999999999999874

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.66  E-value=2.7e-16  Score=131.98  Aligned_cols=99  Identities=32%  Similarity=0.403  Sum_probs=89.3

Q ss_pred             CcCccccCchHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCCh-HHHHHHHHHHHHhhhHHHHHHHHcc
Q 015659          303 EKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVD-DEQKLVKSLRVSCWLNSAACCLKLK  381 (403)
Q Consensus       303 ~~~~~~m~~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~-~~~~~~~~~~~~~~~N~a~c~lkl~  381 (403)
                      .++.|+|+.+|+++.+..+++.||.+|+.|+|.+|+..|++|+.++.......+ ........+...+++|||+||++++
T Consensus         2 ~~~~~~~~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~   81 (153)
T d2fbna1           2 KKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNK   81 (153)
T ss_dssp             CCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhc
Confidence            368899999999999999999999999999999999999999999877555444 4456668888999999999999999


Q ss_pred             CHHHHHHHHHHHHhcccccC
Q 015659          382 DYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       382 ~~~~ai~~~~~aL~~dp~~~  401 (403)
                      +|.+|+.+|++||+++|.|.
T Consensus        82 ~~~~Al~~~~~al~~~p~~~  101 (153)
T d2fbna1          82 DYPKAIDHASKVLKIDKNNV  101 (153)
T ss_dssp             CHHHHHHHHHHHHHHSTTCH
T ss_pred             ccchhhhhhhccccccchhh
Confidence            99999999999999999874

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.7e-16  Score=134.38  Aligned_cols=96  Identities=35%  Similarity=0.618  Sum_probs=92.2

Q ss_pred             ccccCchHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHH
Q 015659          306 PWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQG  385 (403)
Q Consensus       306 ~~~m~~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~  385 (403)
                      +|+|+++|+++.+..+++.||.+|+.|+|..|+..|++||+++........++......+...+|+|+|+||+++++|.+
T Consensus         1 ~~~~~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~   80 (170)
T d1p5qa1           1 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSA   80 (170)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhccc
Confidence            59999999999999999999999999999999999999999998888888888899999999999999999999999999


Q ss_pred             HHHHHHHHHhcccccC
Q 015659          386 AIELCSKVIVEREAAR  401 (403)
Q Consensus       386 ai~~~~~aL~~dp~~~  401 (403)
                      |+.+|++||+++|.|.
T Consensus        81 A~~~~~~al~~~p~~~   96 (170)
T d1p5qa1          81 AIESCNKALELDSNNE   96 (170)
T ss_dssp             HHHHHHHHHHHCTTCH
T ss_pred             ccchhhhhhhccccch
Confidence            9999999999999874

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

Probab=99.45  E-value=3.7e-14  Score=117.92  Aligned_cols=65  Identities=34%  Similarity=0.551  Sum_probs=56.2

Q ss_pred             eEEEEeeccceEEeecC------------CCCCCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCccc
Q 015659          214 VSYIARLEDGTVFEKKG------------YDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA  278 (403)
Q Consensus       214 v~y~g~~~~g~~fd~s~------------~~~~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~  278 (403)
                      +||++++.||++||+|.            ...++|++|.+|.++++|||+.+|.+|+.|++..|.|||+.|||+...
T Consensus        10 v~Y~~~~~~G~~fdsT~e~~~~~~~~~~~~~~~~P~~f~~G~g~~ipglE~al~gm~~Ge~~~v~i~p~~ayG~~d~   86 (151)
T d1ix5a_          10 VDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAYGNRNE   86 (151)
T ss_dssp             ECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSSCSCCS
T ss_pred             EEEEEEECCCCEEEeCchHhcccccccccccCCCCEEEEecCCCccHHHHHHHHhhcCCceeEEEeCHHHhcccccc
Confidence            56777777888888872            124579999999999999999999999999999999999999997654

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=99.40  E-value=4.5e-13  Score=100.16  Aligned_cols=85  Identities=24%  Similarity=0.378  Sum_probs=75.8

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCCCCCCCCCCCCCCCC
Q 015659           61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPP  140 (403)
Q Consensus        61 ~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~~~ayg~~~~~~ip~  140 (403)
                      ++..||.|+|+|+++. ||+.|+++..  ..+.|.+|.+.++|||+++|.+|++|+++.|  .+++...|+..+    .+
T Consensus         1 k~a~GD~V~idy~g~~-dG~~~~~~~~--~~~~~~lg~~~~ipgf~~~l~g~~~Ge~~~~--~i~~p~~y~~~~----la   71 (85)
T d1hxva_           1 KLANGDIAIIDFTGIV-DNKKLASASA--QNYELTIGSNSFIKGFETGLIAMKVNQKKTL--ALTFPSDYHVKE----LQ   71 (85)
T ss_dssp             CCCSSEEEEEEEEEEE-TTEECSTTCC--SEEEEEETSSCSCTTHHHHHHTSCSSEEEEE--CCCCCTTSSSSG----GG
T ss_pred             CCCCCCEEEEEEEEEE-CCEEcccccc--cCCCEEECCcccCchHHHHhccCcCCCeEEE--EEEChhhcCccc----CC
Confidence            3678999999999997 9999998753  5789999999999999999999999999999  988888898776    37


Q ss_pred             CCeEEEEEEeccce
Q 015659          141 NSVVQFEVELVSWI  154 (403)
Q Consensus       141 ~~~l~~~v~l~~~~  154 (403)
                      |.++.|+|+|.+++
T Consensus        72 Gk~~~f~V~v~~Vk   85 (85)
T d1hxva_          72 SKPVTFEVVLKAIK   85 (85)
T ss_dssp             SCCCEEEEEECCBC
T ss_pred             CCcEEEEEEEEEeC
Confidence            88999999998863

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.27  E-value=4.7e-12  Score=107.11  Aligned_cols=92  Identities=28%  Similarity=0.433  Sum_probs=78.9

Q ss_pred             CchHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHH
Q 015659          310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-SFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIE  388 (403)
Q Consensus       310 ~~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~-~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~  388 (403)
                      +.+..+..+..++..||.+|+.|+|..|+..|++||.++.... .........+++....+++|||.||+++++|.+||.
T Consensus        19 ~~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~   98 (169)
T d1ihga1          19 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD   98 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhh
Confidence            4566788899999999999999999999999999999876532 222334455688899999999999999999999999


Q ss_pred             HHHHHHhcccccC
Q 015659          389 LCSKVIVEREAAR  401 (403)
Q Consensus       389 ~~~~aL~~dp~~~  401 (403)
                      +|++||+++|.++
T Consensus        99 ~~~~al~~~p~~~  111 (169)
T d1ihga1          99 SCLEALEIDPSNT  111 (169)
T ss_dssp             HHHHHHTTCTTCH
T ss_pred             hhhhhhhhhhhhh
Confidence            9999999999875

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=99.24  E-value=8.5e-12  Score=93.03  Aligned_cols=76  Identities=13%  Similarity=0.222  Sum_probs=65.4

Q ss_pred             eEEEEeeccceEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEE
Q 015659          214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYY  293 (403)
Q Consensus       214 v~y~g~~~~g~~fd~s~~~~~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f  293 (403)
                      |+|+|++ ||+.|+++   ..+.+.|.+|.+.++|||+.+|.+|++|++..|.+++...|+..+.        +|.++.|
T Consensus        10 idy~g~~-dG~~~~~~---~~~~~~~~lg~~~~ipgf~~~l~g~~~Ge~~~~~i~~p~~y~~~~l--------aGk~~~f   77 (85)
T d1hxva_          10 IDFTGIV-DNKKLASA---SAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKEL--------QSKPVTF   77 (85)
T ss_dssp             EEEEEEE-TTEECSTT---CCSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSGG--------GSCCCEE
T ss_pred             EEEEEEE-CCEEcccc---cccCCCEEECCcccCchHHHHhccCcCCCeEEEEEEChhhcCcccC--------CCCcEEE
Confidence            5566765 78888876   3467899999999999999999999999999999999999987554        6789999


Q ss_pred             EEEEeeec
Q 015659          294 EVEMMDFI  301 (403)
Q Consensus       294 ~iel~~i~  301 (403)
                      +|+|++|+
T Consensus        78 ~V~v~~Vk   85 (85)
T d1hxva_          78 EVVLKAIK   85 (85)
T ss_dssp             EEEECCBC
T ss_pred             EEEEEEeC
Confidence            99999874

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3.3e-11  Score=100.65  Aligned_cols=76  Identities=22%  Similarity=0.239  Sum_probs=66.3

Q ss_pred             chHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHH
Q 015659          311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELC  390 (403)
Q Consensus       311 ~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~  390 (403)
                      .+..++.|..++.+||.+|+.|+|.+|+..|++|+++               .+....+++|+|.|++++++|.+|+.+|
T Consensus         3 ~~~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~---------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~   67 (159)
T d1a17a_           3 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIEL---------------NPSNAIYYGNRSLAYLRTECYGYALGDA   67 (159)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------STTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhcccc---------------chhhhhhhhhhHHHHHhccccchHHHHH
Confidence            4567899999999999999999999999999999997               2233568899999999999999999999


Q ss_pred             HHHHhcccccC
Q 015659          391 SKVIVEREAAR  401 (403)
Q Consensus       391 ~~aL~~dp~~~  401 (403)
                      ++||+++|.+.
T Consensus        68 ~kal~~~p~~~   78 (159)
T d1a17a_          68 TRAIELDKKYI   78 (159)
T ss_dssp             HHHHHHCTTCH
T ss_pred             HHHHHHcccch
Confidence            99999988764

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=3e-11  Score=97.29  Aligned_cols=72  Identities=31%  Similarity=0.403  Sum_probs=64.3

Q ss_pred             HHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIV  395 (403)
Q Consensus       316 ~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~  395 (403)
                      +.|.+.|+.||.+|+.|+|.+|+..|++||++-               +-...+++|+|.||+++++|.+|+.+|++||+
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~---------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   66 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELD---------------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE   66 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------cccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence            367889999999999999999999999999972               12256999999999999999999999999999


Q ss_pred             cccccCC
Q 015659          396 EREAARG  402 (403)
Q Consensus       396 ~dp~~~~  402 (403)
                      ++|.+..
T Consensus        67 l~~~~~~   73 (128)
T d1elra_          67 VGRENRE   73 (128)
T ss_dssp             HHHHSTT
T ss_pred             hCcccHH
Confidence            9998754

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.11  E-value=3.1e-11  Score=103.75  Aligned_cols=69  Identities=29%  Similarity=0.410  Sum_probs=62.3

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      +..+++.||.+|+.|+|.+|+..|++||.+-               +....+|+|+|.||+++++|.+|+.+|++||+++
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~---------------p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~   68 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN---------------PLVAVYYTNRALCYLKMQQPEQALADCRRALELD   68 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC
Confidence            6789999999999999999999999999972               2235799999999999999999999999999999


Q ss_pred             cccC
Q 015659          398 EAAR  401 (403)
Q Consensus       398 p~~~  401 (403)
                      |.+.
T Consensus        69 p~~~   72 (201)
T d2c2la1          69 GQSV   72 (201)
T ss_dssp             TTCH
T ss_pred             CCcH
Confidence            9874

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=6e-11  Score=93.90  Aligned_cols=69  Identities=25%  Similarity=0.203  Sum_probs=53.6

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      .+..+++.||.+|+.|+|.+|+..|++||+.-.               ....+++|+|.||+++++|.+|+.+|+++|++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p---------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   66 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP---------------HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL   66 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---------------cchhhhhcccccccccccccccchhhhhHHHh
Confidence            567899999999999999999999999999722               22346677777777777777777777777777


Q ss_pred             cccc
Q 015659          397 REAA  400 (403)
Q Consensus       397 dp~~  400 (403)
                      +|.+
T Consensus        67 ~p~~   70 (117)
T d1elwa_          67 KPDW   70 (117)
T ss_dssp             CTTC
T ss_pred             ccch
Confidence            7665

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=1.1e-09  Score=84.67  Aligned_cols=87  Identities=24%  Similarity=0.434  Sum_probs=72.2

Q ss_pred             CCCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCCCCCCCCCCCCCCC
Q 015659           60 DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLP  139 (403)
Q Consensus        60 ~~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~~~ayg~~~~~~ip  139 (403)
                      ..++.||.|+|+|+++. ||+.+.+..  ...+.|.+|.+.++++|+++|.||++|+++.|++.+|.++.-      .--
T Consensus        13 r~a~~GD~v~id~~~~~-dG~~~~~~~--~~~~~~~lg~~~~~~gf~~~L~G~k~Ge~~~~~~~~P~d~~~------~~l   83 (106)
T d1l1pa_          13 GAVEAEDRVTIDFTGSV-DGEEFEGGK--ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHA------ENL   83 (106)
T ss_dssp             SSCCTTEEEEEEEECCS-SSSCCSTTE--EEEEEEEETTSCCCTTHHHHTTSCCTTCCEEEEECCCSSCCC------TTT
T ss_pred             ccccCCCEEEEEEEEEE-CCEECCCCc--ccceEEEecCCCccchHHHHhcCCCCCceEEEEEEeCCCCCc------hhh
Confidence            45788999999999875 899887653  256899999999999999999999999999997777866532      123


Q ss_pred             CCCeEEEEEEecccee
Q 015659          140 PNSVVQFEVELVSWIT  155 (403)
Q Consensus       140 ~~~~l~~~v~l~~~~~  155 (403)
                      +|..+.|.|++..+..
T Consensus        84 aGK~v~f~V~v~~i~~   99 (106)
T d1l1pa_          84 KGKAAKFAINLKKVEE   99 (106)
T ss_dssp             TTCCEEEEEEEEEEEC
T ss_pred             CCCEEEEEEEEEEecc
Confidence            7899999999998864

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=3.3e-09  Score=80.37  Aligned_cols=76  Identities=16%  Similarity=0.095  Sum_probs=64.0

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      +...-+.|+.+|+.|+|..|+..|++|+++........        .....++.|+|.|+.++|+|++|+.++++||+++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~--------~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEIST--------IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS--------SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccC--------ccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            34566889999999999999999999999876533222        1234689999999999999999999999999999


Q ss_pred             cccC
Q 015659          398 EAAR  401 (403)
Q Consensus       398 p~~~  401 (403)
                      |.++
T Consensus        77 P~~~   80 (95)
T d1tjca_          77 PEHQ   80 (95)
T ss_dssp             TTCH
T ss_pred             cCCH
Confidence            9875

>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Vibrio cholerae [TaxId: 666]

Probab=98.84  E-value=1.5e-09  Score=85.02  Aligned_cols=86  Identities=22%  Similarity=0.488  Sum_probs=72.1

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEeccCCCCCCeeEEeCCCccchhHHHhhcCcccCcEEEEEEEcCCCCCCCCCCCCCCCC
Q 015659           61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPP  140 (403)
Q Consensus        61 ~~~~gd~V~v~y~~~~~~g~~~~ss~~~~~p~~~~lG~~~~~~gl~~al~~m~~Ge~~~v~~~vp~~~ayg~~~~~~ip~  140 (403)
                      .++.||.|+|+|+++. ||+.+....  ...+.|.+|.+.++++|+++|.||++|+++.|++.+|.++.-..      -+
T Consensus        23 ~a~~gD~v~id~~~~~-dG~~~~~~~--~~~~~~~lg~~~~~~~f~~~L~G~k~Ge~~~~~~~~Ped~~~~~------la   93 (113)
T d1t11a3          23 AAENGKRVSIDFVGSI-DGVEFEGGK--AENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAEN------LK   93 (113)
T ss_dssp             CCCTTCEEEEEEEEES-SSSCCTTCE--EEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTT------TS
T ss_pred             cccCCCEEEEEEEEEE-CCEEccCCc--cceEEEEeccccccccHHHhhcCCcCCCEEEEEEeCCCcCCccc------cC
Confidence            4789999999999886 898887753  25789999999999999999999999999999778887654222      26


Q ss_pred             CCeEEEEEEecccee
Q 015659          141 NSVVQFEVELVSWIT  155 (403)
Q Consensus       141 ~~~l~~~v~l~~~~~  155 (403)
                      |.++.|.|++..++.
T Consensus        94 Gk~~~f~v~v~~Ik~  108 (113)
T d1t11a3          94 GKAAKFAIKVNKVEA  108 (113)
T ss_dssp             SCEEEECCCEEEEEE
T ss_pred             CCeEEEEEEEEEEEe
Confidence            889999999998764

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.74  E-value=7.5e-09  Score=85.68  Aligned_cols=85  Identities=12%  Similarity=0.089  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHH
Q 015659          313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK  392 (403)
Q Consensus       313 e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~  392 (403)
                      +.+..+......|+.+|+.|+|++|+..|++||.+....+.....   ........+|+|+|.||.++++|.+|+.+|++
T Consensus         4 ~~~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~---~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~   80 (156)
T d2hr2a1           4 KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAF---DHAGFDAFCHAGLAEALAGLRSFDEALHSADK   80 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCC---CHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhc---ccchhHHHHHHHHHHHHHHcCccchhhHhhhh
Confidence            345667778888999999999999999999999987654322111   11334467999999999999999999999999


Q ss_pred             HHhccccc
Q 015659          393 VIVEREAA  400 (403)
Q Consensus       393 aL~~dp~~  400 (403)
                      +|++.|.+
T Consensus        81 al~~~~~~   88 (156)
T d2hr2a1          81 ALHYFNRR   88 (156)
T ss_dssp             HHHHHHHH
T ss_pred             hhhccccc
Confidence            99987643

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=2.3e-07  Score=72.56  Aligned_cols=68  Identities=15%  Similarity=0.056  Sum_probs=60.1

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp  398 (403)
                      ..+...|+.+++.|+|.+|+..|.+|+++-               +....++.|+|.|+.++++|++|+..+.++++++|
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---------------p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p  102 (117)
T d1elwa_          38 VLYSNRSAAYAKKGDYQKAYEDGCKTVDLK---------------PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEA  102 (117)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             hhhhcccccccccccccccchhhhhHHHhc---------------cchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            345678999999999999999999999972               22356899999999999999999999999999999


Q ss_pred             ccC
Q 015659          399 AAR  401 (403)
Q Consensus       399 ~~~  401 (403)
                      .|.
T Consensus       103 ~~~  105 (117)
T d1elwa_         103 NNP  105 (117)
T ss_dssp             TCH
T ss_pred             CCH
Confidence            875

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.39  E-value=9.1e-08  Score=74.35  Aligned_cols=66  Identities=14%  Similarity=0.069  Sum_probs=58.6

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      .-..|..+++.|+|.+|+..|++++..               .+....++.|+|.|+.++++|.+|+.+.+++|+++|.+
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~---------------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   83 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQK---------------EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD   83 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH---------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhccc---------------ccccchhhhhhhhhhhhhhhHHHhhccccccccccccc
Confidence            345788999999999999999999997               22336799999999999999999999999999999987


Q ss_pred             C
Q 015659          401 R  401 (403)
Q Consensus       401 ~  401 (403)
                      +
T Consensus        84 ~   84 (112)
T d1hxia_          84 I   84 (112)
T ss_dssp             H
T ss_pred             c
Confidence            5

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.37  E-value=2.6e-07  Score=75.86  Aligned_cols=68  Identities=13%  Similarity=-0.010  Sum_probs=60.6

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp  398 (403)
                      .-.-..|.-+++.++|..|+..|++||.+               ++....++.|+|.||.++++|.+|+.++.++|+++|
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~---------------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P  132 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKI---------------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP  132 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccc---------------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            34457899999999999999999999997               333467999999999999999999999999999999


Q ss_pred             ccC
Q 015659          399 AAR  401 (403)
Q Consensus       399 ~~~  401 (403)
                      .|+
T Consensus       133 ~n~  135 (153)
T d2fbna1         133 NNL  135 (153)
T ss_dssp             TCH
T ss_pred             CCH
Confidence            885

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=5.2e-07  Score=69.21  Aligned_cols=61  Identities=7%  Similarity=0.089  Sum_probs=51.8

Q ss_pred             CCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeccC
Q 015659          235 QPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKE  303 (403)
Q Consensus       235 ~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~~~  303 (403)
                      +.+.|.+|.+.++|||+.+|.+|++|+...|.+.....|..        .--.|.++.|.|+|.+|.+.
T Consensus        40 ~~~~~~lg~~~~~~gf~~~L~G~k~Ge~~~~~~~~P~d~~~--------~~laGK~v~f~V~v~~i~~~  100 (106)
T d1l1pa_          40 SDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHA--------ENLKGKAAKFAINLKKVEER  100 (106)
T ss_dssp             EEEEEEETTSCCCTTHHHHTTSCCTTCCEEEEECCCSSCCC--------TTTTTCCEEEEEEEEEEECC
T ss_pred             cceEEEecCCCccchHHHHhcCCCCCceEEEEEEeCCCCCc--------hhhCCCEEEEEEEEEEeccc
Confidence            45789999999999999999999999999999976555543        23468899999999999864

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=3.4e-07  Score=78.21  Aligned_cols=66  Identities=9%  Similarity=0.118  Sum_probs=57.3

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      +...|+.+++.|+|++|+..|++||++               ++....+++|++.||.++++|.+|+.+|++||...|.|
T Consensus        39 ~~nlG~~~~~~g~~~~A~~~~~kAl~l---------------dp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          39 CFNIGCMYTILKNMTEAEKAFTRSINR---------------DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHcCCchhHHHHHHHHHHH---------------hhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccC
Confidence            567899999999999999999999997               33346799999999999999999999999999887766


Q ss_pred             C
Q 015659          401 R  401 (403)
Q Consensus       401 ~  401 (403)
                      .
T Consensus       104 ~  104 (192)
T d1hh8a_         104 Q  104 (192)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.31  E-value=1.2e-06  Score=73.79  Aligned_cols=87  Identities=14%  Similarity=0.072  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccC-------CCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHH
Q 015659          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSED-------GSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAI  387 (403)
Q Consensus       315 ~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~-------~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai  387 (403)
                      +.....+...|+.++..|+++.|+..|.+|+.+....       ..+-..+...+......++.|+|.+++++|+|.+|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            5577888999999999999999999999999975431       122335567788899999999999999999999999


Q ss_pred             HHHHHHHhcccccC
Q 015659          388 ELCSKVIVEREAAR  401 (403)
Q Consensus       388 ~~~~~aL~~dp~~~  401 (403)
                      ..|+++|++||.+.
T Consensus        88 ~~~~~al~~~P~~e  101 (179)
T d2ff4a2          88 AELEALTFEHPYRE  101 (179)
T ss_dssp             HHHHHHHHHSTTCH
T ss_pred             HHHHHHHHhCCccH
Confidence            99999999999874

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.27  E-value=5e-07  Score=75.19  Aligned_cols=69  Identities=14%  Similarity=0.070  Sum_probs=60.3

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      +..+...|..+++.|+|.+|+..|++||++               ++-...+++|+|.||+++++|.+|+.++.++|+++
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~---------------~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~  141 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEI---------------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA  141 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhh---------------hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            344556799999999999999999999996               22335689999999999999999999999999999


Q ss_pred             cccC
Q 015659          398 EAAR  401 (403)
Q Consensus       398 p~~~  401 (403)
                      |.|.
T Consensus       142 p~n~  145 (169)
T d1ihga1         142 PEDK  145 (169)
T ss_dssp             TTCH
T ss_pred             CCCH
Confidence            9875

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=5.7e-07  Score=79.23  Aligned_cols=71  Identities=15%  Similarity=0.042  Sum_probs=60.1

Q ss_pred             HHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIV  395 (403)
Q Consensus       316 ~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~  395 (403)
                      ..+..+-..|+.+++.|+|.+|+..|++|+.+- +              -...+++|+|.||+++++|++|+.+++++|+
T Consensus        35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p--------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   99 (259)
T d1xnfa_          35 ERAQLLYERGVLYDSLGLRALARNDFSQALAIR-P--------------DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE   99 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C--------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-C--------------CCHHHHhhhchHHHHHHHHHHhhhhhhHHHH
Confidence            356677889999999999999999999999972 1              1245788999999999999999999999999


Q ss_pred             cccccC
Q 015659          396 EREAAR  401 (403)
Q Consensus       396 ~dp~~~  401 (403)
                      ++|.++
T Consensus       100 ~~p~~~  105 (259)
T d1xnfa_         100 LDPTYN  105 (259)
T ss_dssp             HCTTCT
T ss_pred             HHhhhh
Confidence            998765

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.24  E-value=7.9e-07  Score=74.00  Aligned_cols=69  Identities=14%  Similarity=0.085  Sum_probs=60.6

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      +.-+-..|.-+++.++|.+|+..|++|+.+               .+....++.|+|.||+.+++|.+|+.++.++|+++
T Consensus        64 ~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l---------------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~  128 (168)
T d1kt1a1          64 LAAFLNLAMCYLKLREYTKAVECCDKALGL---------------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN  128 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred             HHHHHhHHHHHHHhhhcccchhhhhhhhhc---------------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            334556888999999999999999999997               23346799999999999999999999999999999


Q ss_pred             cccC
Q 015659          398 EAAR  401 (403)
Q Consensus       398 p~~~  401 (403)
                      |.|.
T Consensus       129 P~n~  132 (168)
T d1kt1a1         129 PQNK  132 (168)
T ss_dssp             TTCH
T ss_pred             CCCH
Confidence            9885

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=5.9e-07  Score=75.06  Aligned_cols=68  Identities=16%  Similarity=0.062  Sum_probs=60.2

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      .....|..+++.|+|.+|+..|++||.+               .+....++.++|.||.++++|.+|+.++.+||+++|.
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~---------------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~  128 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALEL---------------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN  128 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhc---------------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence            3456888999999999999999999997               2334679999999999999999999999999999998


Q ss_pred             cCC
Q 015659          400 ARG  402 (403)
Q Consensus       400 ~~~  402 (403)
                      |..
T Consensus       129 n~~  131 (170)
T d1p5qa1         129 NKA  131 (170)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            753

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.21  E-value=2.4e-06  Score=70.00  Aligned_cols=82  Identities=21%  Similarity=0.128  Sum_probs=65.9

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      .+..+...|+.+++.|+|..|+..|++++.+.........+.    .+....+++|++.||.+++++++|+.++.+||++
T Consensus        54 ~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l  129 (156)
T d2hr2a1          54 DAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE----GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  129 (156)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc----cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455667889999999999999999999999875432222222    2334568999999999999999999999999999


Q ss_pred             ccccCC
Q 015659          397 REAARG  402 (403)
Q Consensus       397 dp~~~~  402 (403)
                      .|...+
T Consensus       130 ~~~~~~  135 (156)
T d2hr2a1         130 IEERKG  135 (156)
T ss_dssp             HHHCCS
T ss_pred             hHHhhc
Confidence            886654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=6.5e-07  Score=76.38  Aligned_cols=68  Identities=15%  Similarity=0.081  Sum_probs=57.3

Q ss_pred             HHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHh
Q 015659          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIV  395 (403)
Q Consensus       316 ~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~  395 (403)
                      ..+-++..+|..++..|+|..|+..|.++.    ..   .           ..+++|++.||+++++|++|+.++++||+
T Consensus         3 ~~~~~l~~~g~~~~~~~d~~~Al~~~~~i~----~~---~-----------~~~~~nlG~~~~~~g~~~~A~~~~~kAl~   64 (192)
T d1hh8a_           3 VEAISLWNEGVLAADKKDWKGALDAFSAVQ----DP---H-----------SRICFNIGCMYTILKNMTEAEKAFTRSIN   64 (192)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS----SC---C-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHhcC----CC---C-----------HHHHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence            356678899999999999999999997631    11   1           23688999999999999999999999999


Q ss_pred             cccccC
Q 015659          396 EREAAR  401 (403)
Q Consensus       396 ~dp~~~  401 (403)
                      +||.++
T Consensus        65 ldp~~~   70 (192)
T d1hh8a_          65 RDKHLA   70 (192)
T ss_dssp             HCTTCH
T ss_pred             Hhhhhh
Confidence            999875

>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Vibrio cholerae [TaxId: 666]

Probab=98.17  E-value=4.6e-07  Score=70.42  Aligned_cols=62  Identities=5%  Similarity=0.081  Sum_probs=51.3

Q ss_pred             CCCeEEEcCCCCcchHHHHHHcccCCCcEEEEEEcCCCCCCCcccccCCCCCCCCCeEEEEEEEeeeccC
Q 015659          234 EQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKE  303 (403)
Q Consensus       234 ~~p~~~~lG~~~v~~gl~~~l~~m~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~iel~~i~~~  303 (403)
                      ...+.|.+|.+.++|+|+.+|.+|++|++..|.++....|.....        .|.++.|.|+|.+|+..
T Consensus        48 ~~~~~~~lg~~~~~~~f~~~L~G~k~Ge~~~~~~~~Ped~~~~~l--------aGk~~~f~v~v~~Ik~~  109 (113)
T d1t11a3          48 AENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENL--------KGKAAKFAIKVNKVEAR  109 (113)
T ss_dssp             EEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTT--------SSCEEEECCCEEEEEEE
T ss_pred             cceEEEEeccccccccHHHhhcCCcCCCEEEEEEeCCCcCCcccc--------CCCeEEEEEEEEEEEec
Confidence            356889999999999999999999999999988876555544222        67899999999999864

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.14  E-value=8.6e-07  Score=75.00  Aligned_cols=68  Identities=16%  Similarity=0.151  Sum_probs=59.4

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp  398 (403)
                      ..+-..|+.+++.|+|.+|+..|++|+.+               .+-....|.|+|.||+++++|.+|+..+++||+++|
T Consensus        39 ~~~~~lg~~y~~~~~~~~Ai~~~~~al~l---------------~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p  103 (201)
T d2c2la1          39 VYYTNRALCYLKMQQPEQALADCRRALEL---------------DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK  103 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTTS---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHhhhhhhhhhhHHHHHHHHh---------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            34567899999999999999999999986               222356899999999999999999999999999999


Q ss_pred             ccC
Q 015659          399 AAR  401 (403)
Q Consensus       399 ~~~  401 (403)
                      .+.
T Consensus       104 ~~~  106 (201)
T d2c2la1         104 EQR  106 (201)
T ss_dssp             HTT
T ss_pred             ccH
Confidence            654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=3e-06  Score=66.66  Aligned_cols=79  Identities=16%  Similarity=0.151  Sum_probs=52.3

Q ss_pred             HHhhHhhhcCcHHHHHHHHHHHHHHhcc------------CCCCChHHHH----HH--------HHHHHHhhhHHHHHHH
Q 015659          323 EEGNLLFKNGKYERAGKKYNKAADCVSE------------DGSFVDDEQK----LV--------KSLRVSCWLNSAACCL  378 (403)
Q Consensus       323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~------------~~~~~~~~~~----~~--------~~~~~~~~~N~a~c~l  378 (403)
                      +..|.++..++|++|.+.|++|+.+-..            .......+.+    .+        .+....+++|+|.||.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            4456666667777777777777664211            0000111111    01        1233458899999999


Q ss_pred             HccCHHHHHHHHHHHHhcccccC
Q 015659          379 KLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       379 kl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      ++|+|.+|+.+++++|+++|.|.
T Consensus        84 ~~g~~~~A~~~~~~aL~~~P~~~  106 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQTEPQNN  106 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHhhhHHHHHHHHHHHHhCcCCH
Confidence            99999999999999999999874

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=3.7e-06  Score=68.94  Aligned_cols=68  Identities=12%  Similarity=0.111  Sum_probs=60.2

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp  398 (403)
                      ..+...|.-+++.|++.+|+..|.+|+++               ++....++.|+|.|++.+|+|.+|+.++.+++.++|
T Consensus        45 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~---------------~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p  109 (159)
T d1a17a_          45 IYYGNRSLAYLRTECYGYALGDATRAIEL---------------DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP  109 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             hhhhhhHHHHHhccccchHHHHHHHHHHH---------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            34557899999999999999999999997               333456899999999999999999999999999999


Q ss_pred             ccC
Q 015659          399 AAR  401 (403)
Q Consensus       399 ~~~  401 (403)
                      .|.
T Consensus       110 ~~~  112 (159)
T d1a17a_         110 HDK  112 (159)
T ss_dssp             TCH
T ss_pred             CCH
Confidence            874

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=6.5e-06  Score=74.66  Aligned_cols=68  Identities=19%  Similarity=0.246  Sum_probs=54.0

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      .+...|+.+++.|+|.+|+..|++|+++               ++....++.|+|.||.++|+|++|+..+++||+++|.
T Consensus       208 ~~~~lg~~~~~~g~~~~A~~~~~~al~~---------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  272 (323)
T d1fcha_         208 LWNKLGATLANGNQSEEAVAAYRRALEL---------------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK  272 (323)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred             chhhhhhcccccccchhHHHHHHHHHHH---------------hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence            3456677888888888888888888875               1122457899999999999999999999999999998


Q ss_pred             cCC
Q 015659          400 ARG  402 (403)
Q Consensus       400 ~~~  402 (403)
                      +.+
T Consensus       273 ~~~  275 (323)
T d1fcha_         273 SRG  275 (323)
T ss_dssp             C--
T ss_pred             Chh
Confidence            764

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=8e-06  Score=74.05  Aligned_cols=64  Identities=14%  Similarity=0.139  Sum_probs=53.6

Q ss_pred             HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      ++|..+|+.|+|.+|+..|+++++.               .+....++.|+|.|+.++++|.+|+..++++++++|.+.
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~---------------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   87 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQ---------------DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ   87 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHS---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccc
Confidence            5799999999999999999999986               122245788888888888888888888888888888764

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=6.5e-06  Score=75.35  Aligned_cols=64  Identities=9%  Similarity=0.085  Sum_probs=54.5

Q ss_pred             HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      +.|+.+|+.|+|.+|++.|+++++...               ....++.++|.|++++++|++|+..++++|+++|.++
T Consensus         4 ~la~~~~~~G~~~~A~~~~~~~l~~~p---------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~   67 (388)
T d1w3ba_           4 ELAHREYQAGDFEAAERHCMQLWRQEP---------------DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA   67 (388)
T ss_dssp             THHHHHHHHTCHHHHHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            568999999999999999999998621               1234788899999999999999999999999998764

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=7.3e-05  Score=58.63  Aligned_cols=75  Identities=16%  Similarity=0.271  Sum_probs=61.9

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVER  397 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~d  397 (403)
                      +..+...|+.+++.|+|.+|+..|.+|+.+-.....        .......+|.+++.++..+++|.+|+...+++|..+
T Consensus        38 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~--------~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~  109 (128)
T d1elra_          38 MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE--------DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH  109 (128)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHH--------HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence            345677899999999999999999999997433221        134556799999999999999999999999999987


Q ss_pred             ccc
Q 015659          398 EAA  400 (403)
Q Consensus       398 p~~  400 (403)
                      |.+
T Consensus       110 ~~~  112 (128)
T d1elra_         110 RTP  112 (128)
T ss_dssp             CCH
T ss_pred             CCH
Confidence            753

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=2.7e-05  Score=67.99  Aligned_cols=68  Identities=10%  Similarity=-0.029  Sum_probs=58.8

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccc
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVERE  398 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp  398 (403)
                      ..+...|..+++.|+|.+|+..|++|+++-.               .....+.|++.|+.++++|.+|+..++++|+++|
T Consensus        72 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p  136 (259)
T d1xnfa_          72 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDP---------------TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP  136 (259)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHhhhchHHHHHHHHHHhhhhhhHHHHHHh---------------hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc
Confidence            3456789999999999999999999999721               1234789999999999999999999999999999


Q ss_pred             ccC
Q 015659          399 AAR  401 (403)
Q Consensus       399 ~~~  401 (403)
                      .+.
T Consensus       137 ~~~  139 (259)
T d1xnfa_         137 NDP  139 (259)
T ss_dssp             TCH
T ss_pred             ccH
Confidence            753

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=9.1e-06  Score=63.74  Aligned_cols=56  Identities=16%  Similarity=0.173  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc---CHHHHHHHHHHHHhccccc
Q 015659          337 AGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK---DYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       337 A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~---~~~~ai~~~~~aL~~dp~~  400 (403)
                      +...|.+|.+.+..        .-.+.+....++.|+|.|+++.+   ++.+|+..++++|+.+|.+
T Consensus        11 ~~~~l~~Ae~~Y~~--------aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~   69 (122)
T d1nzna_          11 SVEDLLKFEKKFQS--------EKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE   69 (122)
T ss_dssp             HHHHHHHHHHHHHH--------HHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH
T ss_pred             CHHHHHHHHHHHHH--------HHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCc
Confidence            44566777766432        11122334569999999999855   5667999999999998764

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=1.7e-05  Score=72.51  Aligned_cols=66  Identities=18%  Similarity=0.109  Sum_probs=54.3

Q ss_pred             HHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       321 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      ....|+-+++.|+|++|+..|++|+++-               +-...++.|+|.|+.++|+|++|+..+++||+++|.+
T Consensus       308 ~~~l~~~~~~~~~~~~A~~~~~~al~~~---------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~  372 (388)
T d1w3ba_         308 LNNLANIKREQGNIEEAVRLYRKALEVF---------------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF  372 (388)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHTTSC---------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred             hhHHHHHHHHCCCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            3455777888888888888888888751               1124588999999999999999999999999999987


Q ss_pred             C
Q 015659          401 R  401 (403)
Q Consensus       401 ~  401 (403)
                      +
T Consensus       373 ~  373 (388)
T d1w3ba_         373 A  373 (388)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.62  E-value=3.5e-05  Score=59.04  Aligned_cols=62  Identities=13%  Similarity=-0.042  Sum_probs=54.0

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHH
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVI  394 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL  394 (403)
                      +..+...|.-+++.+++.+|+..|++|+.+               .+....++.|+|.||.++|++.+|+...++.|
T Consensus        50 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---------------~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          50 EEAWRSLGLTQAENEKDGLAIIALNHARML---------------DPKDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhhhhhhhhHHHhhccccccccc---------------ccccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            344567899999999999999999999997               23335689999999999999999999999987

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.51  E-value=0.00013  Score=65.28  Aligned_cols=81  Identities=16%  Similarity=0.151  Sum_probs=64.6

Q ss_pred             chHHHHH-HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHH
Q 015659          311 NQGKIEA-AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIEL  389 (403)
Q Consensus       311 ~~e~~~~-~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~  389 (403)
                      ...+.+. +.-+...||-+...++|.+|+..|.+|+.+......         ......+|.|+|.||.++++|++|+..
T Consensus        29 ~~~~~~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~---------~~~~a~~~~~~g~~y~~~~~~~~A~~~   99 (290)
T d1qqea_          29 DSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGN---------EDEAGNTYVEAYKCFKSGGNSVNAVDS   99 (290)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC---------CHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            3444544 556778888888999999999999999998544221         223467999999999999999999999


Q ss_pred             HHHHHhccccc
Q 015659          390 CSKVIVEREAA  400 (403)
Q Consensus       390 ~~~aL~~dp~~  400 (403)
                      +++++++.+.+
T Consensus       100 ~~~a~~~~~~~  110 (290)
T d1qqea_         100 LENAIQIFTHR  110 (290)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHhhHHhhhc
Confidence            99999987654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.38  E-value=2.7e-05  Score=62.76  Aligned_cols=61  Identities=11%  Similarity=0.054  Sum_probs=50.1

Q ss_pred             hHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHc----------cCHHHHHHHHHHHHh
Q 015659          326 NLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL----------KDYQGAIELCSKVIV  395 (403)
Q Consensus       326 n~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl----------~~~~~ai~~~~~aL~  395 (403)
                      +.+=+.+.|++|+..|++|+++               .+....+++|++.|++.+          +.+++|+..+++||+
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~---------------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~   69 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKS---------------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL   69 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhh---------------CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            4444667899999999999997               334467999999999865          456889999999999


Q ss_pred             cccccC
Q 015659          396 EREAAR  401 (403)
Q Consensus       396 ~dp~~~  401 (403)
                      ++|.++
T Consensus        70 l~P~~~   75 (145)
T d1zu2a1          70 IDPKKD   75 (145)
T ss_dssp             HCTTCH
T ss_pred             hcchhh
Confidence            999875

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.38  E-value=9.7e-05  Score=57.36  Aligned_cols=35  Identities=17%  Similarity=0.321  Sum_probs=32.8

Q ss_pred             HHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          367 VSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       367 ~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      .-+++|+|.+|.|+|+|.+|+.+|+++|+++|.|.
T Consensus        73 rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~  107 (124)
T d2pqrb1          73 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  107 (124)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence            35889999999999999999999999999999984

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.36  E-value=6.4e-05  Score=60.47  Aligned_cols=57  Identities=9%  Similarity=0.068  Sum_probs=47.1

Q ss_pred             hcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHcc-----------CHHHHHHHHHHHHhccc
Q 015659          330 KNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-----------DYQGAIELCSKVIVERE  398 (403)
Q Consensus       330 k~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~-----------~~~~ai~~~~~aL~~dp  398 (403)
                      ..+++++|+..|++|+++               ++-...+++|++.||..++           .|.+|+....+||+++|
T Consensus        53 ~~~~~~~Ai~~~~kAl~l---------------~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P  117 (145)
T d1zu2a1          53 AKQMIQEAITKFEEALLI---------------DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP  117 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHHHh---------------cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCC
Confidence            345678999999999997               2333568999999998875           47999999999999999


Q ss_pred             ccC
Q 015659          399 AAR  401 (403)
Q Consensus       399 ~~~  401 (403)
                      .|.
T Consensus       118 ~~~  120 (145)
T d1zu2a1         118 DNT  120 (145)
T ss_dssp             TCH
T ss_pred             CHH
Confidence            874

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.34  E-value=7.6e-05  Score=66.49  Aligned_cols=63  Identities=13%  Similarity=-0.063  Sum_probs=56.4

Q ss_pred             HhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       324 ~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      ++..+++.|++..|+..|+++++.               ++-...++.|++.+++..|+|++|+..++++++++|.+.
T Consensus         2 q~~~aL~~G~l~eAl~~l~~al~~---------------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~   64 (264)
T d1zbpa1           2 QWKNALSEGQLQQALELLIEAIKA---------------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL   64 (264)
T ss_dssp             CHHHHTTTTCHHHHHHHHHHHHHT---------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             hHHHHHHCCCHHHHHHHHHHHHHH---------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH
Confidence            357789999999999999999997               334467999999999999999999999999999999764

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=6.2e-05  Score=68.72  Aligned_cols=36  Identities=8%  Similarity=0.207  Sum_probs=26.8

Q ss_pred             HHHHhhhHHHHHHHHccCHHHHHHHHHHHHhccccc
Q 015659          365 LRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       365 ~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      ....+++|++.|+.++++|.+|+.+++++|++||.|
T Consensus       144 ~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n  179 (315)
T d2h6fa1         144 KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN  179 (315)
T ss_dssp             TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCcc
Confidence            345577777777777777777777777777777765

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=0.00078  Score=60.02  Aligned_cols=75  Identities=27%  Similarity=0.294  Sum_probs=60.2

Q ss_pred             HHHHHHHhhHhhh-cCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          318 AGRKKEEGNLLFK-NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       318 ~~~~k~~Gn~~fk-~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      +..+...|..+++ .++|++|+..|++|+.+......         ......++.|+|.++.++++|.+|+..+.+++..
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~---------~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~  187 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS---------VALSNKCFIKCADLKALDGQYIEASDIYSKLIKS  187 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCc---------hhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHh
Confidence            4445566777766 49999999999999998654321         3345678999999999999999999999999998


Q ss_pred             ccccC
Q 015659          397 REAAR  401 (403)
Q Consensus       397 dp~~~  401 (403)
                      .|.+.
T Consensus       188 ~~~~~  192 (290)
T d1qqea_         188 SMGNR  192 (290)
T ss_dssp             TSSCT
T ss_pred             Cccch
Confidence            87654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00034  Score=63.59  Aligned_cols=79  Identities=14%  Similarity=0.092  Sum_probs=48.6

Q ss_pred             HHhhHhhhcCcHHHHHHHHHHHHHHhccC-------------CCCC-hHHH------HHHHHHHHHhhhHHHHHHHHccC
Q 015659          323 EEGNLLFKNGKYERAGKKYNKAADCVSED-------------GSFV-DDEQ------KLVKSLRVSCWLNSAACCLKLKD  382 (403)
Q Consensus       323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~-------------~~~~-~~~~------~~~~~~~~~~~~N~a~c~lkl~~  382 (403)
                      ..|..+-+.+++++|+..|++||.+-...             ...+ ++..      -++++-...++.|++.|+.++++
T Consensus        48 ~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~  127 (315)
T d2h6fa1          48 YFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRD  127 (315)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhcc
Confidence            34556666677777777777777752110             0000 1111      12234446678888888888888


Q ss_pred             HHHHHHHHHHHHhcccccC
Q 015659          383 YQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       383 ~~~ai~~~~~aL~~dp~~~  401 (403)
                      +.+|+..++++|++||.|.
T Consensus       128 ~~eAl~~~~kal~~dp~n~  146 (315)
T d2h6fa1         128 PSQELEFIADILNQDAKNY  146 (315)
T ss_dssp             CTTHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHhhhhhhhhcch
Confidence            8888888888888888764

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.0013  Score=58.32  Aligned_cols=71  Identities=7%  Similarity=-0.046  Sum_probs=57.4

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      -.--+|..++..|++++|+..|++|+.......          ......++++++.||..+|+|.+|+..+.+++++.|.
T Consensus        14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~----------~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~   83 (366)
T d1hz4a_          14 FNALRAQVAINDGNPDEAERLAKLALEELPPGW----------FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ   83 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCC----------cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence            333468889999999999999999999743321          3344568899999999999999999999999988765


Q ss_pred             c
Q 015659          400 A  400 (403)
Q Consensus       400 ~  400 (403)
                      .
T Consensus        84 ~   84 (366)
T d1hz4a_          84 H   84 (366)
T ss_dssp             T
T ss_pred             h
Confidence            4

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.84  E-value=0.0011  Score=55.04  Aligned_cols=69  Identities=7%  Similarity=0.014  Sum_probs=58.7

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHH---
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV---  393 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~a---  393 (403)
                      .+..+...++.+.+.|+|..|+..+++++.+               ++....+|.|+..|+.++|++.+|+..++++   
T Consensus        66 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~---------------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~  130 (179)
T d2ff4a2          66 KVLAHTAKAEAEIACGRASAVIAELEALTFE---------------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT  130 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHHh---------------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            4556677899999999999999999999997               4445679999999999999999999888877   


Q ss_pred             ----Hhccccc
Q 015659          394 ----IVEREAA  400 (403)
Q Consensus       394 ----L~~dp~~  400 (403)
                          |-++|+.
T Consensus       131 L~~eLG~~P~~  141 (179)
T d2ff4a2         131 LADDLGIDPGP  141 (179)
T ss_dssp             HHHHHSCCCCH
T ss_pred             HHHHhCCCcCH
Confidence                5677753

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.0013  Score=63.53  Aligned_cols=69  Identities=14%  Similarity=0.022  Sum_probs=59.5

Q ss_pred             HHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhc
Q 015659          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVE  396 (403)
Q Consensus       317 ~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~  396 (403)
                      ....+...|.-+...++|.+|+..|++|+.+-..               ....|+|+|.++.+.+++.+|+.++.+||.+
T Consensus       151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~---------------~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~  215 (497)
T d1ya0a1         151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS---------------NGQPYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            3455667899999999999999999999998322               2358999999999999999999999999999


Q ss_pred             cccc
Q 015659          397 REAA  400 (403)
Q Consensus       397 dp~~  400 (403)
                      +|.-
T Consensus       216 ~~~~  219 (497)
T d1ya0a1         216 KFPF  219 (497)
T ss_dssp             SBCC
T ss_pred             CCCC
Confidence            8753

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.04  E-value=0.0014  Score=59.21  Aligned_cols=39  Identities=5%  Similarity=-0.124  Sum_probs=34.8

Q ss_pred             HHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          363 KSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       363 ~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      .+-...++.++|.|+.+++++++|+.++++|+++||.++
T Consensus       272 ~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~  310 (334)
T d1dcea1         272 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA  310 (334)
T ss_dssp             CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH
T ss_pred             CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccH
Confidence            345567899999999999999999999999999999754

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=95.96  E-value=0.012  Score=51.81  Aligned_cols=69  Identities=9%  Similarity=-0.061  Sum_probs=57.1

Q ss_pred             HHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccc
Q 015659          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREA  399 (403)
Q Consensus       322 k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~  399 (403)
                      ...|..++..|+|..|...|++++.......         ..+....++.++|.+|.++|++++|+..+++||++.+.
T Consensus       255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         255 RNIARAQILLGEFEPAEIVLEELNENARSLR---------LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcc---------cChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence            3467888999999999999999998754321         14556778999999999999999999999999998653

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.0081  Score=43.69  Aligned_cols=48  Identities=8%  Similarity=-0.060  Sum_probs=36.8

Q ss_pred             HHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHc
Q 015659          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL  380 (403)
Q Consensus       318 ~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl  380 (403)
                      +..+...|+.+++.|+|++|+..|++||++               ++-...++.|++.+.--+
T Consensus        46 ~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l---------------~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          46 VSVLDYLSYAVYQQGDLDKALLLTKKLLEL---------------DPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHhcCChHHHHHHHHHHHHh---------------CcCCHHHHHHHHHHHHHh
Confidence            455677899999999999999999999997               222245778887655433

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.06  E-value=0.031  Score=40.52  Aligned_cols=66  Identities=15%  Similarity=0.144  Sum_probs=48.2

Q ss_pred             hHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc-CCCCChHHHHHHHHHHHHhhhHHHHHH
Q 015659          312 QGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE-DGSFVDDEQKLVKSLRVSCWLNSAACC  377 (403)
Q Consensus       312 ~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~-~~~~~~~~~~~~~~~~~~~~~N~a~c~  377 (403)
                      ...+..|..+-.+|-++=+.|+|..|+.+|.+|+++|.. ....+++.....-.-++.-|++||-..
T Consensus         9 ~~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~~~e~~~~~k~~l~~k~~eYl~RAE~L   75 (93)
T d1wfda_           9 DSDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENI   75 (93)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            345778888888999999999999999999999998855 222233444444455666777777553

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.0075  Score=57.92  Aligned_cols=62  Identities=8%  Similarity=-0.021  Sum_probs=37.0

Q ss_pred             HHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHHccCHHHHHHHHHHHHhcccccC
Q 015659          323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       323 ~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lkl~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      ..|..+.+.+++..|+..|.+++..                 ....++.|++.++.++++|++|+.++.+|++++|.+.
T Consensus       125 ~lg~~~~~~~~~~~A~~~~~~al~~-----------------~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~  186 (497)
T d1ya0a1         125 QLGIISNKQTHTSAIVKPQSSSCSY-----------------ICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG  186 (497)
T ss_dssp             ------------------CCHHHHH-----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS
T ss_pred             HhHHHHHhCCCHHHHHHHHHHHhCC-----------------CHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCch
Confidence            3455555555555555555555543                 2345899999999999999999999999999999885

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.46  E-value=0.015  Score=52.01  Aligned_cols=82  Identities=5%  Similarity=-0.153  Sum_probs=45.7

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc--------------CCCCC-hHHHHH------HHHH-HHHhhhHHHHH
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSE--------------DGSFV-DDEQKL------VKSL-RVSCWLNSAAC  376 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~--------------~~~~~-~~~~~~------~~~~-~~~~~~N~a~c  376 (403)
                      ..+...++.....+++.+|+..|++++..-..              ....+ ++....      ..+- ....+.+++.+
T Consensus        74 ~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~  153 (334)
T d1dcea1          74 QHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA  153 (334)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHH
Confidence            44455566677788888999999888875210              00000 111110      1111 12234455566


Q ss_pred             HHHccCHHHHHHHHHHHHhccccc
Q 015659          377 CLKLKDYQGAIELCSKVIVEREAA  400 (403)
Q Consensus       377 ~lkl~~~~~ai~~~~~aL~~dp~~  400 (403)
                      +...+.+..|+..++++++++|.|
T Consensus       154 ~~~~~~~~~Al~~~~~~i~~~p~~  177 (334)
T d1dcea1         154 AQAAVAPAEELAFTDSLITRNFSN  177 (334)
T ss_dssp             HHTCCCHHHHHHHHHTTTTTTCCC
T ss_pred             HHhccccHHHHHHHHHHHHcCCCC
Confidence            666677777777777777777765

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=92.39  E-value=0.12  Score=44.08  Aligned_cols=62  Identities=19%  Similarity=0.165  Sum_probs=46.4

Q ss_pred             HHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHH----ccCHHHHHHHHHHHH
Q 015659          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK----LKDYQGAIELCSKVI  394 (403)
Q Consensus       319 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lk----l~~~~~ai~~~~~aL  394 (403)
                      ..+-..|..+|++++|.+|+..|++|.+.-+                 ..++.||+.+|++    .+++..|+..+..+.
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~-----------------~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~   65 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDLKE-----------------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC   65 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-----------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-----------------HHHHHHHHHHHHcCCCcchhHHHHHHhhcccc
Confidence            3556779999999999999999999987511                 2366777877777    667777777777765


Q ss_pred             hcc
Q 015659          395 VER  397 (403)
Q Consensus       395 ~~d  397 (403)
                      ...
T Consensus        66 ~~~   68 (265)
T d1ouva_          66 DLN   68 (265)
T ss_dssp             HTT
T ss_pred             ccc
Confidence            543

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.17  E-value=0.065  Score=37.21  Aligned_cols=66  Identities=18%  Similarity=0.143  Sum_probs=44.7

Q ss_pred             chHHHHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhccC-C-CCChHHHHHHHHHHHHhhhHHHHH
Q 015659          311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSED-G-SFVDDEQKLVKSLRVSCWLNSAAC  376 (403)
Q Consensus       311 ~~e~~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~-~-~~~~~~~~~~~~~~~~~~~N~a~c  376 (403)
                      ..+.++.|..+-.+|-++=++|+|..|+..|..|+.+|... . ..+.+.....-.-++.-|++||-.
T Consensus         4 ~~~~l~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l~~~l~~e~~~~~~k~~l~~k~~~Yl~RAE~   71 (77)
T d1wr0a1           4 TSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEK   71 (77)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTGGGGHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            34567788888888999999999999999999999987441 1 112222222233345666666643

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.46  E-value=0.21  Score=34.45  Aligned_cols=36  Identities=31%  Similarity=0.385  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHhhHhhhcCcHHHHHHHHHHHHHHhcc
Q 015659          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE  350 (403)
Q Consensus       315 ~~~~~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~  350 (403)
                      ++.|...--++..+.+.|+|++|+.++++|..+|..
T Consensus         5 LN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~e   40 (83)
T d2crba1           5 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE   40 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            667777778899999999999999999999999865

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=90.24  E-value=0.68  Score=39.76  Aligned_cols=82  Identities=18%  Similarity=0.136  Sum_probs=57.2

Q ss_pred             HHHHHhhHhhhcCcHHHHHHHHHHHHHHhccCCCCChH---------HHHH-----------HHHHHHHhhhHHHHHHHH
Q 015659          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDD---------EQKL-----------VKSLRVSCWLNSAACCLK  379 (403)
Q Consensus       320 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~l~~~~~~~~~---------~~~~-----------~~~~~~~~~~N~a~c~lk  379 (403)
                      .....|.-+...|+|++|+..|++++++-......-..         ...+           ..+-....++++|.++++
T Consensus        32 ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~  111 (264)
T d1zbpa1          32 LRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMV  111 (264)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHh
Confidence            34567888999999999999999999863110000000         0000           011123356788999999


Q ss_pred             ccCHHHHHHHHHHHHhcccccC
Q 015659          380 LKDYQGAIELCSKVIVEREAAR  401 (403)
Q Consensus       380 l~~~~~ai~~~~~aL~~dp~~~  401 (403)
                      .+++++|+..+.+++++.|.+.
T Consensus       112 ~gd~~~A~~~~~~a~e~~p~~~  133 (264)
T d1zbpa1         112 SQDYEQVSELALQIEELRQEKG  133 (264)
T ss_dssp             HTCHHHHHHHHHHHHHHCCCCC
T ss_pred             CCCHHHHHHHHHHHHhcCCCCC
Confidence            9999999999999999998865

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=80.82  E-value=0.89  Score=38.11  Aligned_cols=62  Identities=19%  Similarity=0.175  Sum_probs=48.1

Q ss_pred             HHHhhHhhh----cCcHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHhhhHHHHHHHH----ccCHHHHHHHHHHH
Q 015659          322 KEEGNLLFK----NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK----LKDYQGAIELCSKV  393 (403)
Q Consensus       322 k~~Gn~~fk----~~~~~~A~~~Y~~al~~l~~~~~~~~~~~~~~~~~~~~~~~N~a~c~lk----l~~~~~ai~~~~~a  393 (403)
                      -..|+-++.    .+++++|+..|++|.+.-                 ....+.||+.+|.+    .+++..|+.+.++|
T Consensus       182 ~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g-----------------~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kA  244 (265)
T d1ouva_         182 FNAGNMYHHGEGATKNFKEALARYSKACELE-----------------NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKG  244 (265)
T ss_dssp             HHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-----------------CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred             cchhhhcccCcccccchhhhhhhHhhhhccc-----------------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Confidence            345666655    678999999999998851                 13477899999997    56899999999999


Q ss_pred             Hhccccc
Q 015659          394 IVEREAA  400 (403)
Q Consensus       394 L~~dp~~  400 (403)
                      .+.....
T Consensus       245 a~~g~~~  251 (265)
T d1ouva_         245 CKLGAKG  251 (265)
T ss_dssp             HHHTCHH
T ss_pred             HHCcCHH
Confidence            8775543